Query 040300
Match_columns 605
No_of_seqs 588 out of 3749
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j16_B RLI1P; ribosome recycli 100.0 5E-148 2E-152 1248.2 47.7 600 1-605 1-605 (608)
2 3bk7_A ABC transporter ATP-bin 100.0 2E-137 6E-142 1164.4 46.7 591 3-603 16-607 (607)
3 3ozx_A RNAse L inhibitor; ATP 100.0 2E-104 8E-109 883.6 42.4 522 79-605 1-523 (538)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 6.7E-98 2E-102 833.2 43.6 527 68-604 12-538 (538)
5 2iw3_A Elongation factor 3A; a 100.0 1.9E-65 6.6E-70 596.3 32.6 416 82-545 440-975 (986)
6 3g5u_A MCG1178, multidrug resi 100.0 6E-62 2E-66 591.3 33.3 205 349-564 1037-1263(1284)
7 3ux8_A Excinuclease ABC, A sub 100.0 5.5E-62 1.9E-66 558.5 28.3 332 199-560 184-641 (670)
8 4f4c_A Multidrug resistance pr 100.0 3.2E-57 1.1E-61 551.1 29.5 205 349-564 1083-1309(1321)
9 3pih_A Uvrabc system protein A 100.0 3E-50 1E-54 468.4 24.8 336 196-561 443-904 (916)
10 2r6f_A Excinuclease ABC subuni 100.0 3.2E-49 1.1E-53 456.7 28.7 338 194-560 482-943 (972)
11 2vf7_A UVRA2, excinuclease ABC 100.0 5.7E-49 2E-53 454.2 29.8 338 194-560 357-828 (842)
12 2ygr_A Uvrabc system protein A 100.0 1.1E-48 3.7E-53 453.8 32.1 341 194-560 499-961 (993)
13 4g1u_C Hemin import ATP-bindin 100.0 1.5E-42 5.2E-47 353.9 26.2 226 349-582 18-261 (266)
14 3gfo_A Cobalt import ATP-bindi 100.0 4.5E-43 1.6E-47 359.1 22.0 205 349-560 14-234 (275)
15 3tui_C Methionine import ATP-b 100.0 1.3E-42 4.3E-47 367.1 25.7 205 349-560 31-254 (366)
16 3fvq_A Fe(3+) IONS import ATP- 100.0 1.7E-42 5.9E-47 365.8 26.0 204 349-560 11-229 (359)
17 3rlf_A Maltose/maltodextrin im 100.0 3E-42 1E-46 366.3 24.7 204 349-560 10-224 (381)
18 2olj_A Amino acid ABC transpor 100.0 1E-41 3.5E-46 347.1 25.9 203 349-560 31-249 (263)
19 1b0u_A Histidine permease; ABC 100.0 9.3E-42 3.2E-46 347.5 25.0 203 349-560 13-243 (262)
20 3tif_A Uncharacterized ABC tra 100.0 9.9E-42 3.4E-46 341.9 23.4 192 349-546 8-223 (235)
21 1z47_A CYSA, putative ABC-tran 100.0 1.2E-41 4.2E-46 359.3 24.5 204 349-560 21-236 (355)
22 2pcj_A ABC transporter, lipopr 100.0 2.4E-41 8.3E-46 336.7 25.0 189 349-545 11-216 (224)
23 2yyz_A Sugar ABC transporter, 100.0 2.5E-41 8.4E-46 357.8 25.5 204 349-560 10-224 (359)
24 2nq2_C Hypothetical ABC transp 100.0 1.8E-41 6.3E-46 343.5 23.5 199 349-560 11-218 (253)
25 1ji0_A ABC transporter; ATP bi 100.0 2.6E-41 8.9E-46 339.9 23.7 202 349-559 13-228 (240)
26 3d31_A Sulfate/molybdate ABC t 100.0 2.1E-41 7.3E-46 357.1 24.0 203 349-560 8-218 (348)
27 2it1_A 362AA long hypothetical 100.0 2.9E-41 1E-45 357.6 24.2 204 349-560 10-224 (362)
28 1oxx_K GLCV, glucose, ABC tran 100.0 1.6E-41 5.6E-46 359.1 21.9 205 349-560 10-231 (353)
29 1g29_1 MALK, maltose transport 100.0 3.9E-41 1.3E-45 358.4 24.6 204 349-560 10-230 (372)
30 1vpl_A ABC transporter, ATP-bi 100.0 4.1E-41 1.4E-45 341.4 23.6 202 349-559 22-235 (256)
31 1g6h_A High-affinity branched- 100.0 2E-41 6.8E-46 344.2 20.8 199 349-556 14-239 (257)
32 2onk_A Molybdate/tungstate ABC 100.0 3.6E-41 1.2E-45 338.7 21.9 201 349-560 8-217 (240)
33 1v43_A Sugar-binding transport 100.0 4.5E-41 1.5E-45 357.4 23.8 204 349-560 18-232 (372)
34 1tf7_A KAIC; homohexamer, hexa 100.0 8.9E-44 3E-48 396.7 -0.3 374 93-542 27-441 (525)
35 2yz2_A Putative ABC transporte 100.0 1.2E-40 4.2E-45 340.0 23.0 204 349-560 9-228 (266)
36 2ihy_A ABC transporter, ATP-bi 100.0 4.6E-41 1.6E-45 345.2 17.5 203 349-560 28-253 (279)
37 2qi9_C Vitamin B12 import ATP- 100.0 2.2E-40 7.7E-45 334.6 21.5 192 358-559 15-222 (249)
38 1sgw_A Putative ABC transporte 100.0 1.7E-40 5.9E-45 328.0 13.9 187 349-544 17-209 (214)
39 2ixe_A Antigen peptide transpo 100.0 1.3E-39 4.6E-44 333.1 20.7 203 349-561 23-247 (271)
40 2ff7_A Alpha-hemolysin translo 100.0 4.1E-39 1.4E-43 325.2 23.5 199 349-560 14-233 (247)
41 3gfo_A Cobalt import ATP-bindi 100.0 6.9E-40 2.4E-44 335.5 17.6 201 69-292 7-220 (275)
42 2pjz_A Hypothetical protein ST 100.0 3E-39 1E-43 328.9 20.2 197 349-560 8-216 (263)
43 3tif_A Uncharacterized ABC tra 100.0 1.8E-39 6.2E-44 325.5 17.3 197 83-291 7-220 (235)
44 2d2e_A SUFC protein; ABC-ATPas 100.0 2.5E-39 8.5E-44 327.5 18.3 198 349-555 10-229 (250)
45 3nh6_A ATP-binding cassette SU 100.0 1E-38 3.6E-43 331.1 22.5 203 345-561 57-279 (306)
46 2olj_A Amino acid ABC transpor 100.0 4.6E-39 1.6E-43 327.5 18.3 211 60-292 14-235 (263)
47 2pcj_A ABC transporter, lipopr 100.0 3.6E-39 1.2E-43 321.0 16.9 202 69-291 4-214 (224)
48 1mv5_A LMRA, multidrug resista 100.0 7E-39 2.4E-43 322.8 18.4 200 349-560 8-227 (243)
49 1b0u_A Histidine permease; ABC 100.0 7.1E-39 2.4E-43 326.3 18.4 203 69-291 6-228 (262)
50 4g1u_C Hemin import ATP-bindin 100.0 6.8E-39 2.3E-43 326.9 18.2 202 66-292 8-224 (266)
51 3tui_C Methionine import ATP-b 100.0 8.6E-39 3E-43 337.8 19.1 205 69-292 24-240 (366)
52 2zu0_C Probable ATP-dependent 100.0 8.8E-39 3E-43 326.4 18.2 201 349-558 27-253 (267)
53 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-38 5.2E-43 322.5 18.4 203 67-292 13-222 (256)
54 1g6h_A High-affinity branched- 100.0 1.1E-38 3.9E-43 323.9 17.5 203 69-292 7-229 (257)
55 3fvq_A Fe(3+) IONS import ATP- 100.0 3.4E-39 1.2E-43 340.6 13.4 204 69-292 4-215 (359)
56 3rlf_A Maltose/maltodextrin im 100.0 8.4E-39 2.9E-43 339.9 15.8 200 69-292 3-210 (381)
57 1ji0_A ABC transporter; ATP bi 100.0 1.6E-38 5.5E-43 319.6 16.6 203 69-292 6-215 (240)
58 2pze_A Cystic fibrosis transme 100.0 9.5E-38 3.3E-42 311.8 21.3 194 349-560 13-219 (229)
59 2ghi_A Transport protein; mult 100.0 1.7E-37 5.7E-42 315.8 21.3 198 349-560 24-243 (260)
60 2yz2_A Putative ABC transporte 100.0 6.2E-38 2.1E-42 320.1 15.9 197 69-292 2-214 (266)
61 2onk_A Molybdate/tungstate ABC 100.0 4.4E-38 1.5E-42 316.2 14.2 192 82-292 6-203 (240)
62 2cbz_A Multidrug resistance-as 100.0 9.4E-38 3.2E-42 313.4 16.2 195 349-561 10-219 (237)
63 2yyz_A Sugar ABC transporter, 100.0 7.3E-38 2.5E-42 331.2 15.9 200 69-292 3-210 (359)
64 1z47_A CYSA, putative ABC-tran 100.0 6E-38 2E-42 331.2 15.2 201 68-292 13-222 (355)
65 3d31_A Sulfate/molybdate ABC t 100.0 7.4E-38 2.5E-42 330.1 15.6 192 83-292 7-204 (348)
66 2nq2_C Hypothetical ABC transp 100.0 1.5E-37 5.3E-42 314.7 17.0 198 69-292 4-205 (253)
67 2it1_A 362AA long hypothetical 100.0 8E-38 2.7E-42 331.3 15.2 200 69-292 3-210 (362)
68 2ihy_A ABC transporter, ATP-bi 100.0 6.9E-38 2.4E-42 321.6 14.2 202 69-292 21-239 (279)
69 1oxx_K GLCV, glucose, ABC tran 100.0 5.5E-38 1.9E-42 332.1 13.4 201 69-292 3-217 (353)
70 1v43_A Sugar-binding transport 100.0 1.5E-37 5.1E-42 330.4 15.4 200 69-292 11-218 (372)
71 3gd7_A Fusion complex of cysti 100.0 3.6E-37 1.2E-41 329.3 18.1 197 349-560 26-243 (390)
72 1g29_1 MALK, maltose transport 100.0 1.7E-37 5.9E-42 330.3 14.9 200 69-292 3-216 (372)
73 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-37 7.3E-42 313.3 14.2 203 69-292 3-220 (250)
74 2ff7_A Alpha-hemolysin translo 100.0 3.5E-37 1.2E-41 311.1 15.6 196 69-291 7-218 (247)
75 2qi9_C Vitamin B12 import ATP- 100.0 5.9E-37 2E-41 309.6 15.9 195 69-292 4-209 (249)
76 1sgw_A Putative ABC transporte 100.0 2.7E-38 9.4E-43 312.2 5.5 194 68-291 9-208 (214)
77 2ixe_A Antigen peptide transpo 100.0 1.2E-36 4E-41 311.3 17.0 199 68-292 15-232 (271)
78 2zu0_C Probable ATP-dependent 100.0 1.5E-36 5E-41 310.0 16.4 202 69-291 20-240 (267)
79 2bbs_A Cystic fibrosis transme 100.0 7.1E-36 2.4E-40 308.0 19.8 184 357-559 52-247 (290)
80 3nh6_A ATP-binding cassette SU 100.0 2.8E-36 9.5E-41 312.9 15.9 198 68-292 52-264 (306)
81 2pjz_A Hypothetical protein ST 100.0 6.9E-36 2.3E-40 304.1 15.5 184 83-292 7-202 (263)
82 1mv5_A LMRA, multidrug resista 100.0 9.5E-37 3.2E-41 307.2 8.6 190 83-291 7-212 (243)
83 3b60_A Lipid A export ATP-bind 100.0 6.3E-35 2.2E-39 329.1 22.3 203 345-560 345-568 (582)
84 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-35 3.7E-40 331.1 15.7 209 82-314 274-484 (538)
85 3b5x_A Lipid A export ATP-bind 100.0 6.4E-35 2.2E-39 329.0 21.9 203 345-560 345-568 (582)
86 2yl4_A ATP-binding cassette SU 100.0 1.1E-34 3.7E-39 328.0 23.6 203 345-559 345-570 (595)
87 3qf4_B Uncharacterized ABC tra 100.0 5.6E-35 1.9E-39 330.4 20.7 199 349-560 361-579 (598)
88 2ghi_A Transport protein; mult 100.0 1.7E-35 5.9E-40 300.9 13.9 197 68-292 16-229 (260)
89 4a82_A Cystic fibrosis transme 100.0 8.8E-35 3E-39 327.6 20.3 199 349-560 346-565 (578)
90 3bk7_A ABC transporter ATP-bin 100.0 3.7E-35 1.3E-39 330.8 16.8 187 349-547 98-307 (607)
91 3qf4_A ABC transporter, ATP-bi 100.0 2.2E-34 7.4E-39 324.8 22.4 203 345-561 345-568 (587)
92 2pze_A Cystic fibrosis transme 100.0 5.5E-35 1.9E-39 291.8 13.1 183 69-291 6-204 (229)
93 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-34 4.2E-39 323.1 16.9 185 349-545 28-235 (538)
94 2cbz_A Multidrug resistance-as 100.0 6E-35 2.1E-39 293.0 10.4 184 69-292 3-204 (237)
95 3gd7_A Fusion complex of cysti 100.0 4.6E-35 1.6E-39 313.0 10.1 197 68-292 18-229 (390)
96 3j16_B RLI1P; ribosome recycli 100.0 1.7E-33 5.8E-38 316.9 20.3 191 370-564 99-317 (608)
97 3b5x_A Lipid A export ATP-bind 100.0 4.6E-33 1.6E-37 313.9 17.4 198 68-292 340-554 (582)
98 2yl4_A ATP-binding cassette SU 100.0 7.3E-33 2.5E-37 313.0 15.7 196 70-292 342-557 (595)
99 3b60_A Lipid A export ATP-bind 100.0 4.7E-33 1.6E-37 313.8 13.8 198 68-292 340-554 (582)
100 2bbs_A Cystic fibrosis transme 100.0 1.6E-32 5.6E-37 282.9 15.6 183 67-292 38-234 (290)
101 3qf4_B Uncharacterized ABC tra 100.0 5.3E-33 1.8E-37 314.2 13.1 197 68-291 353-564 (598)
102 4a82_A Cystic fibrosis transme 100.0 1.1E-32 3.8E-37 310.5 13.3 197 69-292 339-551 (578)
103 2iw3_A Elongation factor 3A; a 100.0 1.6E-31 5.4E-36 311.6 23.3 191 349-559 442-635 (986)
104 3qf4_A ABC transporter, ATP-bi 100.0 2.8E-32 9.7E-37 307.5 15.6 198 68-292 340-553 (587)
105 3g5u_A MCG1178, multidrug resi 100.0 3.7E-31 1.3E-35 321.6 21.5 199 349-560 394-614 (1284)
106 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-31 7.9E-36 304.7 14.5 195 358-561 33-300 (670)
107 4f4c_A Multidrug resistance pr 100.0 1.2E-30 4E-35 317.9 20.4 202 345-560 419-642 (1321)
108 2npi_A Protein CLP1; CLP1-PCF1 99.9 9.4E-29 3.2E-33 270.1 -3.2 183 360-558 129-337 (460)
109 3pih_A Uvrabc system protein A 99.9 5.7E-25 2E-29 256.2 18.7 96 194-290 782-881 (916)
110 2vf7_A UVRA2, excinuclease ABC 99.9 1.4E-25 4.7E-30 259.4 13.4 95 195-290 708-806 (842)
111 4aby_A DNA repair protein RECN 99.9 7.2E-25 2.5E-29 236.5 16.8 71 468-541 296-368 (415)
112 2r6f_A Excinuclease ABC subuni 99.9 4.5E-25 1.5E-29 255.6 16.1 94 196-290 824-921 (972)
113 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.4E-25 2.2E-29 233.7 16.0 82 462-545 274-361 (365)
114 2ygr_A Uvrabc system protein A 99.9 8.4E-25 2.9E-29 254.2 17.3 94 196-290 842-939 (993)
115 4gp7_A Metallophosphoesterase; 99.9 1E-25 3.5E-30 214.3 6.2 147 361-533 1-164 (171)
116 3b85_A Phosphate starvation-in 99.9 1.2E-26 4.1E-31 228.0 -3.0 135 372-533 20-163 (208)
117 4gp7_A Metallophosphoesterase; 99.9 1.9E-25 6.4E-30 212.5 5.0 78 204-282 72-165 (171)
118 4aby_A DNA repair protein RECN 99.9 4.3E-24 1.5E-28 230.4 14.6 71 217-289 296-368 (415)
119 2npi_A Protein CLP1; CLP1-PCF1 99.9 5E-27 1.7E-31 256.5 -10.5 174 83-290 124-323 (460)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.5E-23 8.4E-28 221.4 18.1 81 210-291 273-359 (365)
121 1ye8_A Protein THEP1, hypothet 99.9 1.4E-24 4.8E-29 208.1 4.5 137 376-537 2-152 (178)
122 1e69_A Chromosome segregation 99.9 5.7E-23 2E-27 214.9 12.7 83 460-545 212-300 (322)
123 3b85_A Phosphate starvation-in 99.9 4.2E-25 1.4E-29 217.0 -5.7 142 101-281 20-163 (208)
124 1znw_A Guanylate kinase, GMP k 99.9 3.1E-25 1.1E-29 217.2 -8.8 162 370-542 16-202 (207)
125 1e69_A Chromosome segregation 99.9 1E-21 3.5E-26 205.4 13.9 82 208-291 211-298 (322)
126 1tq4_A IIGP1, interferon-induc 99.9 8.7E-25 3E-29 235.1 -9.9 172 358-539 38-248 (413)
127 3b9q_A Chloroplast SRP recepto 99.8 1.7E-22 5.7E-27 209.5 3.6 163 361-543 92-281 (302)
128 3qkt_A DNA double-strand break 99.8 2.2E-20 7.5E-25 196.7 19.2 81 460-542 241-327 (339)
129 3qkt_A DNA double-strand break 99.8 1.1E-20 3.6E-25 199.1 16.0 83 208-291 240-328 (339)
130 1ye8_A Protein THEP1, hypothet 99.8 3.2E-22 1.1E-26 191.7 3.0 75 208-285 68-152 (178)
131 2og2_A Putative signal recogni 99.8 2.3E-21 7.9E-26 205.0 5.4 162 361-542 149-337 (359)
132 1tq4_A IIGP1, interferon-induc 99.8 1.2E-22 4E-27 218.6 -5.4 155 105-287 71-248 (413)
133 1znw_A Guanylate kinase, GMP k 99.8 2.4E-22 8.3E-27 196.6 -2.8 172 99-289 16-201 (207)
134 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.7E-19 5.9E-24 167.4 9.6 81 460-542 50-136 (148)
135 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.2E-19 7.6E-24 166.7 10.3 82 209-291 50-137 (148)
136 3sop_A Neuronal-specific septi 99.8 5.9E-21 2E-25 194.8 -1.4 141 376-529 4-151 (270)
137 1z6g_A Guanylate kinase; struc 99.8 8.2E-23 2.8E-27 202.0 -14.9 171 358-540 12-206 (218)
138 3aez_A Pantothenate kinase; tr 99.8 5E-21 1.7E-25 199.3 -3.1 153 371-542 87-243 (312)
139 1cr0_A DNA primase/helicase; R 99.8 4.3E-19 1.5E-23 182.8 11.1 174 358-544 24-235 (296)
140 2o8b_B DNA mismatch repair pro 99.8 4.6E-20 1.6E-24 218.4 4.2 155 357-544 770-928 (1022)
141 1tf7_A KAIC; homohexamer, hexa 99.8 1.4E-19 4.6E-24 201.6 7.1 148 100-290 278-441 (525)
142 3b9q_A Chloroplast SRP recepto 99.8 1.3E-20 4.5E-25 195.2 -1.7 167 100-290 97-280 (302)
143 2v9p_A Replication protein E1; 99.8 4.5E-22 1.5E-26 205.8 -15.9 156 349-557 108-264 (305)
144 1cr0_A DNA primase/helicase; R 99.7 4.2E-18 1.4E-22 175.4 12.3 169 100-291 32-234 (296)
145 2ehv_A Hypothetical protein PH 99.7 2.3E-20 7.9E-25 186.2 -4.5 159 368-543 24-207 (251)
146 2pt7_A CAG-ALFA; ATPase, prote 99.7 3.2E-19 1.1E-23 187.1 3.4 130 358-543 160-289 (330)
147 2og2_A Putative signal recogni 99.7 1.1E-19 3.9E-24 192.0 -0.7 167 100-290 154-337 (359)
148 3asz_A Uridine kinase; cytidin 99.7 1.8E-20 6E-25 183.1 -8.4 159 372-543 4-188 (211)
149 3thx_B DNA mismatch repair pro 99.7 1.9E-18 6.6E-23 201.7 7.0 142 358-537 662-804 (918)
150 4a74_A DNA repair and recombin 99.7 1.7E-18 6E-23 170.3 4.9 156 369-543 20-199 (231)
151 2ehv_A Hypothetical protein PH 99.7 5.1E-18 1.7E-22 169.2 6.6 75 217-291 118-207 (251)
152 3thx_A DNA mismatch repair pro 99.7 6.2E-18 2.1E-22 198.0 8.3 136 358-541 651-797 (934)
153 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.4E-17 4.8E-22 163.7 9.0 155 369-543 18-191 (235)
154 2o8b_B DNA mismatch repair pro 99.7 4.8E-18 1.6E-22 201.2 5.8 137 103-291 789-927 (1022)
155 3aez_A Pantothenate kinase; tr 99.7 3.1E-19 1.1E-23 185.7 -4.8 153 100-289 87-242 (312)
156 2pt7_A CAG-ALFA; ATPase, prote 99.7 3E-18 1E-22 179.7 2.1 121 100-290 168-288 (330)
157 2v9p_A Replication protein E1; 99.7 6.2E-20 2.1E-24 189.8 -10.9 146 82-291 106-252 (305)
158 2dpy_A FLII, flagellum-specifi 99.7 3.7E-18 1.3E-22 185.4 1.9 167 349-543 138-330 (438)
159 3sop_A Neuronal-specific septi 99.7 6.1E-19 2.1E-23 179.9 -4.4 145 105-279 4-153 (270)
160 1nlf_A Regulatory protein REPA 99.7 7.1E-17 2.4E-21 164.9 10.8 151 370-532 26-185 (279)
161 2eyu_A Twitching motility prot 99.7 4.6E-18 1.6E-22 172.6 1.8 123 372-542 23-146 (261)
162 3thx_B DNA mismatch repair pro 99.7 2.4E-17 8.1E-22 192.6 7.9 140 92-284 661-803 (918)
163 1z6g_A Guanylate kinase; struc 99.7 1.7E-19 5.9E-24 178.1 -9.4 173 94-286 13-204 (218)
164 2jeo_A Uridine-cytidine kinase 99.7 1.2E-17 4.1E-22 167.5 3.9 157 357-538 13-176 (245)
165 1ewq_A DNA mismatch repair pro 99.7 2.7E-17 9.1E-22 189.4 6.1 130 358-535 568-704 (765)
166 3thx_A DNA mismatch repair pro 99.7 2.4E-17 8.1E-22 193.1 5.6 76 213-289 718-797 (934)
167 2obl_A ESCN; ATPase, hydrolase 99.7 6.1E-19 2.1E-23 186.1 -7.8 169 349-545 52-243 (347)
168 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.2E-16 4.1E-21 157.0 8.4 158 101-291 21-191 (235)
169 2obl_A ESCN; ATPase, hydrolase 99.6 5.8E-18 2E-22 178.6 -1.6 182 82-290 50-240 (347)
170 2i3b_A HCR-ntpase, human cance 99.6 7.1E-18 2.4E-22 163.0 -1.2 147 374-542 1-169 (189)
171 1rj9_A FTSY, signal recognitio 99.6 1.3E-17 4.3E-22 172.9 0.4 141 373-528 101-258 (304)
172 4a74_A DNA repair and recombin 99.6 3E-16 1E-20 154.3 8.8 59 233-291 124-199 (231)
173 3kta_B Chromosome segregation 99.6 8.7E-16 3E-20 146.1 11.3 79 461-542 58-140 (173)
174 2cvh_A DNA repair and recombin 99.6 1.8E-15 6E-20 147.8 12.4 147 369-544 15-185 (220)
175 2dpy_A FLII, flagellum-specifi 99.6 8E-17 2.7E-21 174.9 1.9 177 81-289 135-328 (438)
176 3kta_B Chromosome segregation 99.6 2.7E-15 9.2E-20 142.8 12.1 82 209-292 57-142 (173)
177 2eyu_A Twitching motility prot 99.6 7.2E-17 2.5E-21 163.8 1.1 129 94-290 17-146 (261)
178 1nlf_A Regulatory protein REPA 99.6 8.1E-16 2.8E-20 157.1 8.8 150 101-280 28-185 (279)
179 1wb9_A DNA mismatch repair pro 99.6 2.7E-16 9.3E-21 182.0 5.0 144 358-541 597-742 (800)
180 4ad8_A DNA repair protein RECN 99.6 1.3E-15 4.4E-20 169.2 9.9 80 462-544 391-473 (517)
181 2qnr_A Septin-2, protein NEDD5 99.6 2.1E-17 7.2E-22 171.1 -5.1 156 349-529 5-168 (301)
182 1pzn_A RAD51, DNA repair and r 99.6 4.1E-16 1.4E-20 164.7 3.6 145 368-532 125-290 (349)
183 2cvh_A DNA repair and recombin 99.6 4.3E-15 1.5E-19 145.0 9.9 78 214-291 82-184 (220)
184 4ad8_A DNA repair protein RECN 99.6 2.9E-15 9.8E-20 166.4 9.5 78 212-291 392-472 (517)
185 3asz_A Uridine kinase; cytidin 99.6 4.1E-18 1.4E-22 166.3 -12.8 160 101-290 4-187 (211)
186 3jvv_A Twitching mobility prot 99.6 9E-16 3.1E-20 162.3 3.9 118 372-542 121-244 (356)
187 1rj9_A FTSY, signal recognitio 99.5 1.7E-16 5.7E-21 164.5 -2.7 152 102-277 101-259 (304)
188 1ewq_A DNA mismatch repair pro 99.5 3E-15 1E-19 172.4 6.2 120 103-280 576-702 (765)
189 2i3b_A HCR-ntpase, human cance 99.5 1.2E-16 4E-21 154.4 -5.1 145 103-289 1-168 (189)
190 1pui_A ENGB, probable GTP-bind 99.5 5.6E-15 1.9E-19 143.1 6.1 179 82-268 8-202 (210)
191 1wb9_A DNA mismatch repair pro 99.5 3.2E-15 1.1E-19 173.0 2.2 132 101-286 605-739 (800)
192 3jvv_A Twitching mobility prot 99.5 5.3E-15 1.8E-19 156.4 2.3 57 226-290 188-244 (356)
193 2jeo_A Uridine-cytidine kinase 99.5 3.2E-15 1.1E-19 149.8 -0.4 162 92-286 13-176 (245)
194 2qnr_A Septin-2, protein NEDD5 99.5 1E-15 3.4E-20 158.5 -4.4 62 208-277 105-168 (301)
195 3szr_A Interferon-induced GTP- 99.5 1.2E-14 4E-19 164.3 3.6 131 376-529 47-197 (608)
196 2bbw_A Adenylate kinase 4, AK4 99.5 2.7E-15 9.4E-20 150.2 -2.2 135 374-515 27-198 (246)
197 1n0w_A DNA repair protein RAD5 99.5 4.9E-13 1.7E-17 132.4 14.1 154 369-543 19-208 (243)
198 2o5v_A DNA replication and rep 99.4 5.4E-14 1.8E-18 148.7 7.1 86 462-557 259-354 (359)
199 3auy_A DNA double-strand break 99.4 2.9E-13 9.8E-18 144.0 12.2 78 212-291 276-360 (371)
200 1s96_A Guanylate kinase, GMP k 99.4 1.7E-14 5.7E-19 142.6 2.3 144 370-561 12-162 (219)
201 1lw7_A Transcriptional regulat 99.4 3.5E-15 1.2E-19 158.4 -3.6 164 96-289 160-341 (365)
202 3auy_A DNA double-strand break 99.4 2.2E-13 7.5E-18 144.9 9.7 77 463-542 276-359 (371)
203 1lw7_A Transcriptional regulat 99.4 3.1E-15 1.1E-19 158.8 -5.0 157 374-543 170-343 (365)
204 1w1w_A Structural maintenance 99.4 4.1E-13 1.4E-17 145.6 11.5 80 461-542 327-410 (430)
205 1w1w_A Structural maintenance 99.4 5.7E-13 1.9E-17 144.5 11.1 79 212-291 329-411 (430)
206 1zp6_A Hypothetical protein AT 99.4 1.2E-14 3.9E-19 139.2 -2.5 131 371-513 6-147 (191)
207 1pzn_A RAD51, DNA repair and r 99.4 9.2E-14 3.2E-18 146.7 3.4 138 100-281 128-291 (349)
208 1n0w_A DNA repair protein RAD5 99.4 1.8E-12 6.3E-17 128.2 11.7 58 233-290 118-207 (243)
209 1pui_A ENGB, probable GTP-bind 99.4 2.9E-13 1E-17 131.0 5.4 146 371-516 23-199 (210)
210 2ewv_A Twitching motility prot 99.4 2E-13 6.7E-18 145.4 4.4 118 371-541 133-256 (372)
211 2bdt_A BH3686; alpha-beta prot 99.4 2.5E-16 8.7E-21 151.0 -16.6 168 374-556 2-181 (189)
212 3e70_C DPA, signal recognition 99.3 3.2E-13 1.1E-17 141.2 4.4 169 372-559 127-320 (328)
213 2o5v_A DNA replication and rep 99.3 6.7E-13 2.3E-17 140.3 6.6 74 211-291 259-342 (359)
214 1nij_A Hypothetical protein YJ 99.3 3E-15 1E-19 156.1 -13.0 140 375-534 5-195 (318)
215 1nij_A Hypothetical protein YJ 99.3 3.2E-14 1.1E-18 148.3 -6.4 72 200-284 126-197 (318)
216 3ec2_A DNA replication protein 99.3 4.2E-13 1.4E-17 127.5 1.8 105 374-528 38-143 (180)
217 3lda_A DNA repair protein RAD5 99.3 2E-11 6.9E-16 130.8 14.4 153 369-543 173-362 (400)
218 2bbw_A Adenylate kinase 4, AK4 99.3 1.8E-13 6.2E-18 136.9 -1.7 53 206-265 142-199 (246)
219 2rcn_A Probable GTPase ENGC; Y 99.3 4.9E-13 1.7E-17 140.9 1.3 104 374-482 215-328 (358)
220 2qag_C Septin-7; cell cycle, c 99.3 3.5E-13 1.2E-17 145.2 0.2 152 349-529 18-178 (418)
221 1zp6_A Hypothetical protein AT 99.3 4.3E-13 1.5E-17 128.2 0.6 138 100-264 6-149 (191)
222 3ec2_A DNA replication protein 99.2 3.7E-12 1.3E-16 120.9 5.4 44 234-277 100-144 (180)
223 3szr_A Interferon-induced GTP- 99.2 2.3E-13 7.9E-18 153.7 -3.6 53 226-278 138-198 (608)
224 2qag_B Septin-6, protein NEDD5 99.2 9.7E-13 3.3E-17 141.5 0.2 168 349-528 22-219 (427)
225 2kjq_A DNAA-related protein; s 99.2 5.2E-12 1.8E-16 117.0 4.8 44 231-275 80-124 (149)
226 2ewv_A Twitching motility prot 99.2 2.1E-12 7.1E-17 137.5 1.6 123 100-289 133-256 (372)
227 1s96_A Guanylate kinase, GMP k 99.2 1.8E-11 6.1E-16 120.8 7.8 42 231-281 104-145 (219)
228 2kjq_A DNAA-related protein; s 99.2 1.4E-11 4.9E-16 114.0 6.5 89 373-527 35-124 (149)
229 3lda_A DNA repair protein RAD5 99.2 4.7E-11 1.6E-15 128.0 10.8 59 233-291 272-362 (400)
230 2gza_A Type IV secretion syste 99.2 1.4E-11 4.6E-16 130.7 6.3 128 360-543 166-301 (361)
231 2f1r_A Molybdopterin-guanine d 99.2 2.3E-13 7.9E-18 129.1 -6.6 144 104-267 3-164 (171)
232 1udx_A The GTP-binding protein 99.2 1.7E-12 5.9E-17 139.7 -0.7 149 359-526 147-306 (416)
233 2qag_C Septin-7; cell cycle, c 99.2 6.5E-12 2.2E-16 135.3 3.5 57 217-278 119-179 (418)
234 2yhs_A FTSY, cell division pro 99.2 2.2E-12 7.7E-17 140.5 -0.6 147 360-526 284-447 (503)
235 3e70_C DPA, signal recognition 99.2 2.2E-12 7.4E-17 134.9 -0.8 147 101-275 127-278 (328)
236 2bdt_A BH3686; alpha-beta prot 99.1 4.7E-14 1.6E-18 135.0 -13.8 66 218-287 96-168 (189)
237 1odf_A YGR205W, hypothetical 3 99.1 2.5E-12 8.7E-17 132.2 -2.1 120 374-501 31-168 (290)
238 1sxj_E Activator 1 40 kDa subu 99.1 9.4E-11 3.2E-15 122.8 8.7 139 105-279 38-177 (354)
239 1sxj_E Activator 1 40 kDa subu 99.1 1.2E-10 4.2E-15 121.9 9.4 138 377-542 39-189 (354)
240 1udx_A The GTP-binding protein 99.1 5.3E-12 1.8E-16 135.9 -1.6 77 200-284 239-317 (416)
241 1ls1_A Signal recognition part 99.1 3.1E-11 1E-15 124.4 3.6 200 245-526 20-220 (295)
242 2rcn_A Probable GTPase ENGC; Y 99.1 8.4E-11 2.9E-15 123.9 6.7 111 101-231 213-328 (358)
243 3c8u_A Fructokinase; YP_612366 99.1 8.4E-13 2.9E-17 128.7 -8.3 138 372-537 20-168 (208)
244 2oap_1 GSPE-2, type II secreti 99.1 1.1E-12 3.8E-17 144.9 -9.0 159 360-536 251-458 (511)
245 2dr3_A UPF0273 protein PH0284; 99.1 7.8E-10 2.7E-14 109.3 12.4 60 484-543 127-196 (247)
246 3c8u_A Fructokinase; YP_612366 99.1 2.4E-12 8.1E-17 125.5 -6.1 144 100-285 19-168 (208)
247 2qag_B Septin-6, protein NEDD5 99.1 7.7E-11 2.6E-15 126.7 4.9 57 216-275 161-218 (427)
248 2f1r_A Molybdopterin-guanine d 99.0 1E-12 3.5E-17 124.7 -9.1 125 375-516 3-162 (171)
249 1p9r_A General secretion pathw 99.0 1E-11 3.5E-16 133.9 -2.8 114 373-490 166-314 (418)
250 2yv5_A YJEQ protein; hydrolase 99.0 4.6E-11 1.6E-15 123.5 2.0 105 374-480 165-300 (302)
251 1lvg_A Guanylate kinase, GMP k 99.0 1.4E-12 4.9E-17 126.3 -9.4 57 227-291 116-173 (198)
252 1ls1_A Signal recognition part 99.0 7.8E-10 2.7E-14 113.9 9.9 122 102-273 97-219 (295)
253 2r6a_A DNAB helicase, replicat 99.0 7.4E-10 2.5E-14 120.8 10.1 159 369-544 198-399 (454)
254 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 8.9E-13 3E-17 140.8 -12.9 153 369-544 15-199 (392)
255 1in4_A RUVB, holliday junction 99.0 3.1E-11 1.1E-15 126.4 -1.8 139 375-537 52-211 (334)
256 1vma_A Cell division protein F 99.0 6.8E-10 2.3E-14 114.8 8.2 92 373-496 103-197 (306)
257 2px0_A Flagellar biosynthesis 99.0 4.6E-10 1.6E-14 115.7 6.7 130 373-539 104-237 (296)
258 2r6a_A DNAB helicase, replicat 99.0 9.9E-10 3.4E-14 119.8 9.5 166 100-291 200-398 (454)
259 1vma_A Cell division protein F 99.0 1.9E-09 6.6E-14 111.4 10.8 93 101-245 102-197 (306)
260 1lvg_A Guanylate kinase, GMP k 98.9 2.9E-12 9.9E-17 124.2 -10.4 57 478-543 116-173 (198)
261 1odf_A YGR205W, hypothetical 3 98.9 3.4E-11 1.2E-15 123.8 -3.5 122 101-250 29-168 (290)
262 2qm8_A GTPase/ATPase; G protei 98.9 1.6E-10 5.6E-15 121.2 0.8 148 358-515 44-260 (337)
263 2gza_A Type IV secretion syste 98.9 5.9E-10 2E-14 118.0 3.9 128 100-290 172-300 (361)
264 2oap_1 GSPE-2, type II secreti 98.9 1.9E-12 6.3E-17 143.1 -16.0 60 213-284 397-458 (511)
265 2dr3_A UPF0273 protein PH0284; 98.9 4E-09 1.4E-13 104.2 9.2 59 233-291 127-196 (247)
266 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 4.2E-11 1.4E-15 127.8 -5.6 68 211-292 128-199 (392)
267 1htw_A HI0065; nucleotide-bind 98.9 5.9E-10 2E-14 104.2 2.7 70 358-434 22-95 (158)
268 2yhs_A FTSY, cell division pro 98.9 1.6E-10 5.6E-15 125.8 -1.4 36 100-135 290-325 (503)
269 2px0_A Flagellar biosynthesis 98.8 3.2E-09 1.1E-13 109.4 7.8 130 101-287 103-237 (296)
270 2x8a_A Nuclear valosin-contain 98.8 5.4E-12 1.8E-16 128.7 -14.1 136 358-510 35-190 (274)
271 2x8a_A Nuclear valosin-contain 98.8 5.3E-11 1.8E-15 121.3 -6.8 51 207-259 128-190 (274)
272 1p9r_A General secretion pathw 98.8 9.4E-11 3.2E-15 126.3 -5.5 129 101-239 165-314 (418)
273 2zr9_A Protein RECA, recombina 98.8 9.7E-09 3.3E-13 108.2 9.2 137 369-542 56-228 (349)
274 2ius_A DNA translocase FTSK; n 98.7 6E-10 2.1E-14 122.5 -1.7 166 101-289 165-362 (512)
275 2qm8_A GTPase/ATPase; G protei 98.7 1.5E-09 5.2E-14 113.8 0.7 47 214-264 208-260 (337)
276 1t9h_A YLOQ, probable GTPase E 98.7 1.5E-09 5.3E-14 112.1 0.5 101 374-475 173-303 (307)
277 1in4_A RUVB, holliday junction 98.7 1.6E-10 5.3E-15 121.1 -7.4 142 104-285 52-211 (334)
278 1htw_A HI0065; nucleotide-bind 98.7 5.3E-09 1.8E-13 97.7 3.7 53 82-136 12-65 (158)
279 1u0l_A Probable GTPase ENGC; p 98.7 2.8E-09 9.5E-14 110.0 0.6 96 374-470 169-294 (301)
280 2ius_A DNA translocase FTSK; n 98.7 1.1E-09 3.7E-14 120.5 -2.8 173 361-541 159-362 (512)
281 2yv5_A YJEQ protein; hydrolase 98.6 3.7E-09 1.3E-13 109.1 0.1 125 101-229 163-300 (302)
282 1sq5_A Pantothenate kinase; P- 98.6 7.2E-09 2.5E-13 107.2 1.4 111 372-499 78-198 (308)
283 7fd1_A FD1, protein (7-Fe ferr 98.6 2.4E-08 8.2E-13 86.6 4.3 58 9-75 1-59 (106)
284 1bc6_A 7-Fe ferredoxin; electr 98.6 2.2E-08 7.4E-13 81.6 3.5 59 9-75 1-59 (77)
285 1ypw_A Transitional endoplasmi 98.6 4.1E-08 1.4E-12 114.3 6.8 30 100-129 235-264 (806)
286 2zr9_A Protein RECA, recombina 98.5 2.4E-07 8.2E-12 97.5 10.3 54 224-277 127-199 (349)
287 3tr0_A Guanylate kinase, GMP k 98.5 5.4E-08 1.8E-12 93.5 4.5 28 372-399 5-32 (205)
288 1h98_A Ferredoxin; electron tr 98.5 5.5E-08 1.9E-12 79.4 3.7 59 9-75 1-59 (78)
289 2e87_A Hypothetical protein PH 98.5 1.9E-07 6.5E-12 98.5 8.9 122 376-529 169-293 (357)
290 3eun_A Ferredoxin; electron tr 98.5 8.1E-08 2.8E-12 79.2 4.5 57 9-75 1-63 (82)
291 4a1f_A DNAB helicase, replicat 98.5 2.8E-07 9.6E-12 96.3 9.7 123 369-526 41-164 (338)
292 2v2k_A Ferredoxin; iron, trans 98.5 9.8E-08 3.3E-12 82.5 4.5 59 9-75 1-59 (105)
293 1jnr_B Adenylylsulfate reducta 98.5 9.2E-08 3.1E-12 88.5 4.5 61 9-76 3-68 (150)
294 3hr8_A Protein RECA; alpha and 98.5 1.8E-07 6.1E-12 98.5 7.1 138 369-543 56-229 (356)
295 1oix_A RAS-related protein RAB 98.4 1.3E-07 4.4E-12 90.2 4.6 37 475-513 153-189 (191)
296 1oix_A RAS-related protein RAB 98.4 5.2E-09 1.8E-13 100.0 -5.3 37 224-262 153-189 (191)
297 3gyx_B Adenylylsulfate reducta 98.4 1.6E-07 5.6E-12 88.3 4.7 62 9-77 2-68 (166)
298 1dwl_A Ferredoxin I; electron 98.4 2.7E-07 9.4E-12 70.3 5.0 54 10-72 3-58 (59)
299 3euj_A Chromosome partition pr 98.4 1.1E-07 3.6E-12 104.0 3.1 71 464-541 376-463 (483)
300 2e87_A Hypothetical protein PH 98.4 4.5E-07 1.5E-11 95.6 7.5 68 209-278 224-294 (357)
301 2fdn_A Ferredoxin; electron tr 98.3 2.7E-07 9.2E-12 69.8 3.9 51 12-72 4-54 (55)
302 3k1j_A LON protease, ATP-depen 98.3 1.2E-07 4E-12 107.1 2.3 145 359-512 50-227 (604)
303 1jjv_A Dephospho-COA kinase; P 98.3 1.4E-07 4.9E-12 90.9 2.4 71 217-291 60-132 (206)
304 3lnc_A Guanylate kinase, GMP k 98.3 1.4E-07 4.7E-12 92.9 1.9 37 359-400 17-54 (231)
305 3cmw_A Protein RECA, recombina 98.3 7.9E-06 2.7E-10 100.6 17.5 137 369-542 727-899 (1706)
306 2xau_A PRE-mRNA-splicing facto 98.3 4.4E-07 1.5E-11 105.2 6.1 75 211-285 185-261 (773)
307 1xer_A Ferredoxin; electron tr 98.3 3.2E-07 1.1E-11 78.7 3.4 57 9-73 38-101 (103)
308 2ce7_A Cell division protein F 98.3 5.3E-07 1.8E-11 98.5 5.9 62 470-531 93-167 (476)
309 3lnc_A Guanylate kinase, GMP k 98.3 2.5E-07 8.4E-12 91.1 2.9 29 101-129 25-54 (231)
310 4a1f_A DNAB helicase, replicat 98.3 8.6E-07 3E-11 92.7 7.0 120 100-274 43-164 (338)
311 1jjv_A Dephospho-COA kinase; P 98.3 2.9E-07 9.9E-12 88.7 3.1 128 376-544 4-133 (206)
312 1dax_A Ferredoxin I; electron 98.3 2E-07 6.8E-12 72.7 1.5 56 9-73 4-62 (64)
313 3euj_A Chromosome partition pr 98.3 2.1E-07 7.1E-12 101.6 2.0 34 101-135 28-61 (483)
314 1rgv_A Ferredoxin; electron tr 98.3 1.8E-07 6.2E-12 76.6 1.0 56 9-74 1-62 (80)
315 2xau_A PRE-mRNA-splicing facto 98.2 6.7E-07 2.3E-11 103.6 6.1 76 462-538 185-262 (773)
316 1iqz_A Ferredoxin; iron-sulfer 98.2 4.2E-07 1.4E-11 74.6 3.1 60 8-77 3-73 (81)
317 2fgo_A Ferredoxin; allochromat 98.2 2.8E-07 9.6E-12 75.8 1.9 56 9-74 1-62 (82)
318 1f2g_A Ferredoxin II; electron 98.2 2.1E-07 7E-12 71.1 0.9 53 10-72 3-57 (58)
319 3bh0_A DNAB-like replicative h 98.2 2.1E-06 7.1E-11 89.0 8.5 125 369-526 63-189 (315)
320 2zvs_A Uncharacterized ferredo 98.2 5.1E-07 1.8E-11 74.8 3.1 56 9-74 1-63 (85)
321 1rof_A Ferredoxin; electron tr 98.2 2.8E-07 9.6E-12 70.5 1.3 54 10-73 4-59 (60)
322 3a00_A Guanylate kinase, GMP k 98.2 4E-07 1.4E-11 86.6 2.6 30 103-132 1-30 (186)
323 2ce7_A Cell division protein F 98.2 2E-06 6.8E-11 94.0 8.2 62 219-280 93-168 (476)
324 2qtf_A Protein HFLX, GTP-bindi 98.2 1E-06 3.6E-11 93.1 5.8 65 196-264 280-353 (364)
325 3tr0_A Guanylate kinase, GMP k 98.2 6.4E-07 2.2E-11 85.9 3.2 28 101-128 5-32 (205)
326 1iy2_A ATP-dependent metallopr 98.2 2.9E-09 9.8E-14 108.2 -14.2 117 358-495 64-195 (278)
327 1fnn_A CDC6P, cell division co 98.2 7.7E-06 2.6E-10 85.9 11.7 49 233-282 124-175 (389)
328 2f9l_A RAB11B, member RAS onco 98.2 1.2E-07 4E-12 90.9 -2.2 37 225-263 130-166 (199)
329 3a00_A Guanylate kinase, GMP k 98.2 4.3E-07 1.5E-11 86.4 1.8 31 374-404 1-31 (186)
330 1sq5_A Pantothenate kinase; P- 98.2 7.1E-07 2.4E-11 92.2 3.2 36 100-135 77-114 (308)
331 1fnn_A CDC6P, cell division co 98.1 6.9E-06 2.4E-10 86.3 10.5 127 376-534 46-175 (389)
332 1jb0_C Photosystem I iron-sulf 98.1 7.2E-07 2.5E-11 72.6 1.7 59 10-76 4-68 (80)
333 1iy2_A ATP-dependent metallopr 98.1 8.6E-08 3E-12 97.2 -4.8 30 101-134 73-102 (278)
334 1u0l_A Probable GTPase ENGC; p 98.1 1.4E-06 4.7E-11 89.7 4.0 35 101-135 167-201 (301)
335 2j41_A Guanylate kinase; GMP, 98.1 1.8E-06 6.1E-11 82.7 4.5 33 371-403 3-35 (207)
336 1ixz_A ATP-dependent metallopr 98.1 7.5E-08 2.5E-12 96.1 -5.5 30 101-134 49-78 (254)
337 1ixz_A ATP-dependent metallopr 98.1 6E-09 2.1E-13 104.1 -13.6 130 358-508 40-196 (254)
338 1v5w_A DMC1, meiotic recombina 98.1 1.5E-05 5.1E-10 83.5 11.8 141 369-530 117-276 (343)
339 3hr8_A Protein RECA; alpha and 98.1 2.2E-05 7.5E-10 82.6 12.7 34 101-134 59-92 (356)
340 2j41_A Guanylate kinase; GMP, 98.1 1.8E-06 6.3E-11 82.6 3.8 32 101-132 4-35 (207)
341 3k1j_A LON protease, ATP-depen 98.1 1.9E-06 6.4E-11 97.2 4.5 47 214-261 181-227 (604)
342 1sj1_A Ferredoxin; thermostabi 98.1 1.5E-06 5.2E-11 67.7 2.6 56 9-74 4-65 (66)
343 1qhl_A Protein (cell division 98.0 1.6E-07 5.6E-12 92.8 -4.0 52 68-135 8-59 (227)
344 2f9l_A RAB11B, member RAS onco 98.0 2E-06 7E-11 82.1 3.8 37 476-514 130-166 (199)
345 3i9v_9 NADH-quinone oxidoreduc 98.0 1.6E-06 5.3E-11 82.1 2.8 55 12-74 49-117 (182)
346 1kgd_A CASK, peripheral plasma 98.0 2.4E-06 8.3E-11 80.8 3.4 29 101-129 3-31 (180)
347 3kta_A Chromosome segregation 98.0 2.8E-06 9.4E-11 80.0 3.6 39 360-404 18-56 (182)
348 2qtf_A Protein HFLX, GTP-bindi 98.0 1E-05 3.5E-10 85.5 8.3 63 449-515 282-353 (364)
349 1hfe_L Protein (Fe-only hydrog 98.0 2.6E-06 9E-11 91.7 3.5 58 8-74 27-86 (421)
350 1t9h_A YLOQ, probable GTPase E 98.0 1.5E-06 5E-11 89.8 1.3 36 100-135 170-205 (307)
351 1q16_B Respiratory nitrate red 98.0 3.3E-06 1.1E-10 92.2 4.1 59 9-74 177-236 (512)
352 3bh0_A DNAB-like replicative h 98.0 6E-06 2E-10 85.5 5.7 122 100-274 65-189 (315)
353 1gte_A Dihydropyrimidine dehyd 98.0 4.1E-06 1.4E-10 100.1 4.9 66 5-76 942-1008(1025)
354 3kta_A Chromosome segregation 97.9 4.4E-06 1.5E-10 78.6 3.6 33 101-134 25-57 (182)
355 3mm5_B Sulfite reductase, diss 97.9 1.3E-06 4.3E-11 92.5 -0.3 55 11-71 202-257 (366)
356 2z43_A DNA repair and recombin 97.9 5.9E-05 2E-09 78.2 12.0 139 369-528 102-258 (324)
357 1kgd_A CASK, peripheral plasma 97.9 4.5E-06 1.6E-10 78.9 3.2 28 373-400 4-31 (180)
358 4e22_A Cytidylate kinase; P-lo 97.9 2.6E-06 9E-11 85.2 1.4 34 101-134 25-61 (252)
359 2ivf_B Ethylbenzene dehydrogen 97.9 6.2E-06 2.1E-10 86.4 3.9 61 8-75 143-204 (352)
360 3kl4_A SRP54, signal recogniti 97.9 3.4E-05 1.2E-09 83.1 9.6 34 101-134 95-128 (433)
361 4e22_A Cytidylate kinase; P-lo 97.9 2.9E-06 1E-10 84.9 1.1 35 372-406 25-62 (252)
362 1v5w_A DMC1, meiotic recombina 97.8 4.2E-05 1.4E-09 80.1 9.8 27 100-126 119-145 (343)
363 1qhl_A Protein (cell division 97.8 5.6E-07 1.9E-11 88.9 -4.5 32 375-406 28-59 (227)
364 2vpz_B NRFC protein; oxidoredu 97.8 8.3E-06 2.9E-10 78.6 3.4 57 10-74 52-109 (195)
365 2qby_A CDC6 homolog 1, cell di 97.8 1.5E-05 5.1E-10 83.3 5.6 29 101-129 43-71 (386)
366 3tau_A Guanylate kinase, GMP k 97.8 1E-05 3.6E-10 78.3 4.0 31 101-131 6-36 (208)
367 3or1_B Sulfite reductase beta; 97.8 2.7E-06 9.3E-11 90.5 -0.2 56 11-72 213-275 (386)
368 3b9p_A CG5977-PA, isoform A; A 97.8 6E-05 2.1E-09 76.5 9.8 62 218-279 97-172 (297)
369 3tau_A Guanylate kinase, GMP k 97.8 1.2E-05 4.1E-10 77.9 3.9 28 373-400 7-34 (208)
370 1kqf_B FDH-N beta S, formate d 97.8 9.6E-06 3.3E-10 83.2 3.3 57 11-74 95-152 (294)
371 2z43_A DNA repair and recombin 97.8 5E-05 1.7E-09 78.8 8.7 56 223-278 189-260 (324)
372 4eun_A Thermoresistant glucoki 97.7 1.2E-05 4.2E-10 77.1 3.4 27 101-127 27-53 (200)
373 1rz3_A Hypothetical protein rb 97.7 7.2E-06 2.5E-10 78.9 1.3 35 100-134 19-53 (201)
374 4eun_A Thermoresistant glucoki 97.7 1.5E-05 5E-10 76.5 3.4 26 373-398 28-53 (200)
375 2z4s_A Chromosomal replication 97.7 1.9E-05 6.4E-10 85.6 4.4 45 482-527 191-236 (440)
376 3kl4_A SRP54, signal recogniti 97.7 7.3E-05 2.5E-09 80.5 8.8 121 374-525 97-220 (433)
377 3uie_A Adenylyl-sulfate kinase 97.7 7.3E-06 2.5E-10 78.7 0.8 31 373-404 24-54 (200)
378 2z4s_A Chromosomal replication 97.7 5.6E-05 1.9E-09 81.8 7.9 44 233-276 193-237 (440)
379 3uie_A Adenylyl-sulfate kinase 97.7 8.2E-06 2.8E-10 78.3 1.2 34 100-134 22-55 (200)
380 3b9p_A CG5977-PA, isoform A; A 97.7 0.00013 4.4E-09 74.0 10.1 73 469-541 97-186 (297)
381 1rz3_A Hypothetical protein rb 97.7 9.3E-06 3.2E-10 78.1 1.5 33 373-405 21-53 (201)
382 3c8y_A Iron hydrogenase 1; dit 97.7 6.9E-06 2.4E-10 91.9 0.5 63 8-74 139-209 (574)
383 3lxx_A GTPase IMAP family memb 97.6 8.2E-05 2.8E-09 73.2 7.8 45 232-276 110-157 (239)
384 1ega_A Protein (GTP-binding pr 97.6 2.1E-05 7.1E-10 80.8 3.6 64 468-538 101-169 (301)
385 3mm5_A Sulfite reductase, diss 97.6 7.8E-06 2.7E-10 87.5 0.2 41 23-70 261-301 (418)
386 1h0h_B Formate dehydrogenase ( 97.6 1.6E-05 5.5E-10 77.7 2.4 59 11-73 67-128 (214)
387 4dcu_A GTP-binding protein ENG 97.6 8.8E-05 3E-09 80.6 8.5 56 220-279 88-144 (456)
388 1zu4_A FTSY; GTPase, signal re 97.6 0.00021 7.3E-09 74.0 11.0 35 100-134 102-136 (320)
389 1ti6_B Pyrogallol hydroxytrans 97.6 2.7E-05 9.3E-10 78.9 4.1 51 14-73 66-117 (274)
390 3ney_A 55 kDa erythrocyte memb 97.6 2.6E-05 8.8E-10 75.2 3.7 28 101-128 17-44 (197)
391 2qby_A CDC6 homolog 1, cell di 97.6 1.4E-05 4.7E-10 83.6 2.0 26 375-400 46-71 (386)
392 2vp4_A Deoxynucleoside kinase; 97.6 1.8E-05 6.2E-10 77.8 2.7 27 100-126 17-43 (230)
393 2dy1_A Elongation factor G; tr 97.6 5.8E-05 2E-09 85.9 7.2 46 229-279 94-139 (665)
394 3t34_A Dynamin-related protein 97.6 0.00015 5.2E-09 76.1 9.6 59 215-274 153-212 (360)
395 3t34_A Dynamin-related protein 97.6 0.00022 7.5E-09 74.9 10.6 60 466-526 153-212 (360)
396 1kag_A SKI, shikimate kinase I 97.6 2.3E-05 7.8E-10 72.8 2.6 28 102-129 3-30 (173)
397 1kag_A SKI, shikimate kinase I 97.6 2.4E-05 8.1E-10 72.7 2.5 27 374-400 4-30 (173)
398 3vaa_A Shikimate kinase, SK; s 97.6 3.3E-05 1.1E-09 73.9 3.4 40 88-127 9-49 (199)
399 2gmh_A Electron transfer flavo 97.5 1.9E-05 6.6E-10 88.5 1.8 66 3-74 499-572 (584)
400 2vp4_A Deoxynucleoside kinase; 97.5 2.5E-05 8.7E-10 76.7 2.4 27 371-397 17-43 (230)
401 3ney_A 55 kDa erythrocyte memb 97.5 3.3E-05 1.1E-09 74.5 3.0 27 373-399 18-44 (197)
402 2q6t_A DNAB replication FORK h 97.5 0.00023 8E-09 77.0 10.1 124 369-526 195-318 (444)
403 2dhr_A FTSH; AAA+ protein, hex 97.5 1.5E-05 5.1E-10 87.6 0.3 39 216-256 160-210 (499)
404 1knq_A Gluconate kinase; ALFA/ 97.5 4.1E-05 1.4E-09 71.4 3.2 27 101-127 6-32 (175)
405 1knq_A Gluconate kinase; ALFA/ 97.5 4.5E-05 1.5E-09 71.1 3.4 26 373-398 7-32 (175)
406 3nwj_A ATSK2; P loop, shikimat 97.5 1.1E-05 3.8E-10 80.7 -0.8 45 84-128 25-73 (250)
407 2c42_A Pyruvate-ferredoxin oxi 97.5 4.3E-05 1.5E-09 92.2 4.0 66 6-79 678-770 (1231)
408 3m6a_A ATP-dependent protease 97.5 2.3E-05 7.7E-10 87.2 1.3 34 102-135 107-140 (543)
409 3vaa_A Shikimate kinase, SK; s 97.5 4.6E-05 1.6E-09 73.0 3.3 36 358-398 14-49 (199)
410 2qt1_A Nicotinamide riboside k 97.5 6.2E-05 2.1E-09 72.3 4.2 31 98-128 16-46 (207)
411 3cr8_A Sulfate adenylyltranfer 97.4 2.3E-05 7.9E-10 87.1 0.8 33 371-403 366-398 (552)
412 2q6t_A DNAB replication FORK h 97.4 0.00041 1.4E-08 75.1 10.7 167 100-291 197-397 (444)
413 2dy1_A Elongation factor G; tr 97.4 6.9E-05 2.3E-09 85.3 4.7 44 482-531 96-139 (665)
414 3lxx_A GTPase IMAP family memb 97.4 0.00018 6.1E-09 70.8 7.0 46 483-528 110-157 (239)
415 3cr8_A Sulfate adenylyltranfer 97.4 2.6E-05 9.1E-10 86.6 0.9 33 100-132 366-398 (552)
416 1zu4_A FTSY; GTPase, signal re 97.4 0.00016 5.5E-09 74.9 6.4 40 361-405 97-136 (320)
417 3tqc_A Pantothenate kinase; bi 97.4 5.5E-05 1.9E-09 78.4 2.6 25 376-400 94-118 (321)
418 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.0001 3.5E-09 67.6 4.0 30 361-396 16-45 (149)
419 1l8q_A Chromosomal replication 97.4 0.00018 6.1E-09 74.1 6.3 42 233-274 97-139 (324)
420 1u94_A RECA protein, recombina 97.3 0.00098 3.3E-08 70.0 11.8 125 369-528 58-200 (356)
421 3tqc_A Pantothenate kinase; bi 97.3 6.6E-05 2.3E-09 77.8 2.7 30 105-134 94-125 (321)
422 3nwj_A ATSK2; P loop, shikimat 97.3 1.5E-05 5.2E-10 79.8 -2.4 46 349-399 25-73 (250)
423 1cke_A CK, MSSA, protein (cyti 97.3 3.1E-05 1.1E-09 75.2 -0.2 32 103-134 5-39 (227)
424 2qt1_A Nicotinamide riboside k 97.3 0.00013 4.4E-09 70.0 4.0 29 371-399 18-46 (207)
425 3eun_A Ferredoxin; electron tr 97.3 8.9E-05 3E-09 60.7 2.4 26 48-73 1-26 (82)
426 1cke_A CK, MSSA, protein (cyti 97.2 4.6E-05 1.6E-09 74.0 -0.0 32 374-405 5-39 (227)
427 1ega_A Protein (GTP-binding pr 97.2 2.5E-05 8.4E-10 80.3 -2.2 63 217-286 101-169 (301)
428 3cf0_A Transitional endoplasmi 97.2 0.00044 1.5E-08 70.7 7.2 27 101-127 47-73 (301)
429 2fgo_A Ferredoxin; allochromat 97.2 0.00013 4.3E-09 59.7 2.2 26 48-73 1-26 (82)
430 2zvs_A Uncharacterized ferredo 97.2 0.00011 3.8E-09 60.5 1.8 26 48-73 1-26 (85)
431 1rgv_A Ferredoxin; electron tr 97.2 0.0001 3.6E-09 59.8 1.6 26 48-73 1-26 (80)
432 2ffh_A Protein (FFH); SRP54, s 97.2 0.0013 4.6E-08 70.5 10.7 33 102-134 97-129 (425)
433 2pez_A Bifunctional 3'-phospho 97.1 9.7E-05 3.3E-09 69.2 1.1 29 101-129 3-31 (179)
434 1ti6_B Pyrogallol hydroxytrans 97.1 0.0002 7E-09 72.5 3.6 58 7-76 90-160 (274)
435 2i1q_A DNA repair and recombin 97.1 0.0017 5.9E-08 66.8 10.4 158 369-542 93-289 (322)
436 1ypw_A Transitional endoplasmi 97.1 0.00045 1.6E-08 80.3 6.5 28 373-400 237-264 (806)
437 1u94_A RECA protein, recombina 97.1 0.0027 9.4E-08 66.6 11.6 26 101-126 61-86 (356)
438 2w58_A DNAI, primosome compone 97.0 0.00027 9.2E-09 67.3 3.4 25 104-128 55-79 (202)
439 2www_A Methylmalonic aciduria 97.0 0.00015 5E-09 76.1 1.5 33 102-134 73-105 (349)
440 3cf2_A TER ATPase, transitiona 97.0 0.0036 1.2E-07 72.2 13.1 27 101-127 236-262 (806)
441 4ag6_A VIRB4 ATPase, type IV s 97.0 0.0076 2.6E-07 63.7 14.7 48 233-280 261-311 (392)
442 1dax_A Ferredoxin I; electron 97.0 0.00017 5.8E-09 55.7 1.3 26 47-73 3-28 (64)
443 3qks_A DNA double-strand break 97.0 0.00039 1.3E-08 67.0 4.0 29 361-395 16-44 (203)
444 2pez_A Bifunctional 3'-phospho 97.0 0.00036 1.2E-08 65.3 3.5 28 373-400 4-31 (179)
445 1svm_A Large T antigen; AAA+ f 97.0 0.0003 1E-08 74.5 3.3 128 359-496 159-312 (377)
446 2if2_A Dephospho-COA kinase; a 97.0 0.00033 1.1E-08 66.8 3.3 21 376-396 3-23 (204)
447 2w58_A DNAI, primosome compone 97.0 0.00085 2.9E-08 63.8 6.1 24 376-399 56-79 (202)
448 1svm_A Large T antigen; AAA+ f 97.0 0.00035 1.2E-08 74.0 3.6 50 209-269 275-325 (377)
449 1njg_A DNA polymerase III subu 97.0 0.0015 5.3E-08 62.5 8.0 45 233-279 125-169 (250)
450 3bgw_A DNAB-like replicative h 96.9 0.0012 4.1E-08 71.4 7.7 125 369-526 192-318 (444)
451 3bos_A Putative DNA replicatio 96.9 0.0005 1.7E-08 66.6 4.2 26 102-127 51-76 (242)
452 2www_A Methylmalonic aciduria 96.9 0.0002 6.8E-09 75.1 1.4 32 374-405 74-105 (349)
453 3i9v_3 NADH-quinone oxidoreduc 96.9 0.00027 9.1E-09 82.0 2.5 94 10-111 175-280 (783)
454 1l8q_A Chromosomal replication 96.9 0.00045 1.5E-08 71.1 3.8 42 484-526 97-139 (324)
455 4fcw_A Chaperone protein CLPB; 96.9 0.00063 2.2E-08 69.1 4.8 33 101-133 45-77 (311)
456 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00052 1.8E-08 62.8 3.8 23 103-125 23-45 (149)
457 3cf0_A Transitional endoplasmi 96.9 0.0023 7.8E-08 65.3 9.0 24 375-398 50-73 (301)
458 2ivf_B Ethylbenzene dehydrogen 96.9 0.00036 1.2E-08 73.0 2.9 59 7-77 175-242 (352)
459 1jb0_C Photosystem I iron-sulf 96.9 0.00023 8E-09 57.4 1.2 28 47-74 2-29 (80)
460 3llm_A ATP-dependent RNA helic 96.9 0.0003 1E-08 69.1 2.0 43 468-512 161-204 (235)
461 2if2_A Dephospho-COA kinase; a 96.9 0.00039 1.3E-08 66.3 2.7 21 105-125 3-23 (204)
462 1h0h_B Formate dehydrogenase ( 96.9 0.00026 9E-09 69.0 1.4 60 7-76 99-167 (214)
463 3or1_A Sulfite reductase alpha 96.8 0.00041 1.4E-08 74.3 2.9 41 23-70 278-318 (437)
464 3bos_A Putative DNA replicatio 96.8 0.00071 2.4E-08 65.4 4.3 42 484-526 103-146 (242)
465 1iqz_A Ferredoxin; iron-sulfer 96.8 0.0003 1E-08 57.2 1.3 25 47-72 3-27 (81)
466 3h4m_A Proteasome-activating n 96.8 0.0022 7.4E-08 64.4 7.7 27 101-127 49-75 (285)
467 2gj8_A MNME, tRNA modification 96.8 0.00065 2.2E-08 63.0 3.5 28 101-128 2-29 (172)
468 1j8m_F SRP54, signal recogniti 96.7 0.0078 2.7E-07 61.5 11.6 33 102-134 97-129 (297)
469 1xp8_A RECA protein, recombina 96.7 0.01 3.6E-07 62.4 12.7 137 369-542 69-241 (366)
470 4fcw_A Chaperone protein CLPB; 96.7 0.0019 6.5E-08 65.5 6.8 28 376-403 49-76 (311)
471 1kqf_B FDH-N beta S, formate d 96.7 0.00046 1.6E-08 70.6 2.1 57 8-76 125-190 (294)
472 2vpz_B NRFC protein; oxidoredu 96.7 0.0007 2.4E-08 65.0 3.1 56 8-76 82-146 (195)
473 1h98_A Ferredoxin; electron tr 96.7 0.00049 1.7E-08 55.5 1.6 27 48-74 1-29 (78)
474 3io5_A Recombination and repai 96.7 0.0047 1.6E-07 63.6 9.2 125 369-529 24-173 (333)
475 1xer_A Ferredoxin; electron tr 96.7 0.00047 1.6E-08 58.6 1.5 29 46-74 36-64 (103)
476 2fdn_A Ferredoxin; electron tr 96.7 0.00063 2.1E-08 50.8 2.0 24 49-73 3-26 (55)
477 1m7g_A Adenylylsulfate kinase; 96.7 0.00027 9.4E-09 68.1 -0.0 32 101-132 23-54 (211)
478 1bc6_A 7-Fe ferredoxin; electr 96.7 0.00066 2.3E-08 54.5 2.3 26 48-73 1-28 (77)
479 2yvu_A Probable adenylyl-sulfa 96.7 0.00049 1.7E-08 64.8 1.7 33 101-133 11-43 (186)
480 3h4m_A Proteasome-activating n 96.7 0.0017 5.8E-08 65.2 5.7 23 376-398 53-75 (285)
481 2gj8_A MNME, tRNA modification 96.7 0.0012 4E-08 61.3 4.2 27 373-399 3-29 (172)
482 1m7g_A Adenylylsulfate kinase; 96.7 0.00031 1E-08 67.8 0.2 30 374-403 25-54 (211)
483 1dwl_A Ferredoxin I; electron 96.6 0.0008 2.7E-08 50.6 2.5 24 48-72 2-25 (59)
484 2yvu_A Probable adenylyl-sulfa 96.6 0.00045 1.6E-08 65.0 1.3 31 373-403 12-42 (186)
485 2qor_A Guanylate kinase; phosp 96.6 0.0008 2.7E-08 64.4 3.1 28 101-128 10-37 (204)
486 2qor_A Guanylate kinase; phosp 96.6 0.00079 2.7E-08 64.5 3.0 28 372-399 10-37 (204)
487 2p67_A LAO/AO transport system 96.6 0.00045 1.5E-08 72.1 1.3 35 100-134 53-87 (341)
488 1q16_B Respiratory nitrate red 96.6 0.00077 2.6E-08 73.6 3.1 56 7-74 208-272 (512)
489 4eaq_A DTMP kinase, thymidylat 96.6 0.0007 2.4E-08 66.5 2.5 40 359-400 13-52 (229)
490 2ffh_A Protein (FFH); SRP54, s 96.6 0.0085 2.9E-07 64.3 11.1 32 374-405 98-129 (425)
491 2p67_A LAO/AO transport system 96.6 0.0005 1.7E-08 71.7 1.4 31 374-404 56-86 (341)
492 2ohf_A Protein OLA1, GTP-bindi 96.6 0.0012 4.1E-08 70.2 4.2 27 100-126 19-45 (396)
493 1sj1_A Ferredoxin; thermostabi 96.6 0.0006 2E-08 52.6 1.3 25 47-72 3-27 (66)
494 3cm0_A Adenylate kinase; ATP-b 96.5 0.0013 4.5E-08 61.4 3.4 24 373-396 3-26 (186)
495 3t61_A Gluconokinase; PSI-biol 96.5 0.0011 3.8E-08 63.1 2.9 26 102-127 17-42 (202)
496 3t61_A Gluconokinase; PSI-biol 96.5 0.0011 3.6E-08 63.3 2.6 24 375-398 19-42 (202)
497 4eaq_A DTMP kinase, thymidylat 96.5 0.0012 4.1E-08 64.8 3.0 34 100-134 23-56 (229)
498 2i1q_A DNA repair and recombin 96.4 0.0029 1E-07 65.1 6.0 25 101-125 96-120 (322)
499 2wji_A Ferrous iron transport 96.4 0.0018 6.3E-08 59.2 4.0 24 376-399 5-28 (165)
500 2wji_A Ferrous iron transport 96.4 0.0019 6.5E-08 59.2 4.1 24 105-128 5-28 (165)
No 1
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-148 Score=1248.18 Aligned_cols=600 Identities=69% Similarity=1.164 Sum_probs=535.2
Q ss_pred CCCCceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccC
Q 040300 1 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLD 80 (605)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~ 80 (605)
|++++|||||||+|+|||+||++||++|||+||||++||++++++++|+|||+||||||||||||||+||+|+|||++|+
T Consensus 1 ~~~~~~~~~~~~~~~c~~~~~~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~~~~c~~~~~~~~~cp~~~i~i~nl~~~~~ 80 (608)
T 3j16_B 1 MSDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTNLE 80 (608)
T ss_dssp CCCCCEEEEEECSSSCCHHHHCSHHHHHCHHHHHTCCSEEEETTTTEEEECTTTCCCCCHHHHHCSSCCEEEEEESSSSS
T ss_pred CCCccceEEEEeccccCccccccchhhcCCCccCCceEEEEcCCCCceEEehhhccccccccccCCccceEEecCChhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|+|+.++|.+++++.+++||++||+||||||||||+|+|+|+++|+.|++...+.|...+.++.|.+++.++....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999988888998888999999999887766
Q ss_pred HHHHHHhhcccccccchhhhhc---hhhhhcCc--hHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCC
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQG---NVGQVLDQ--KDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNA 235 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~---~v~~~l~~--~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p 235 (605)
...+...+.+|+++.++..+.+ ++.+.+.. ....++++++++.+||.+.+++++.+|||||||||+||+||+++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p 240 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEA 240 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCC
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCC
Confidence 5555555677888777654433 23322211 112367889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcC
Q 040300 236 EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAG 315 (605)
Q Consensus 236 ~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g 315 (605)
++||||||||+||+.++..++++|+++.++|+|||+||||++++..+||+|++|+++++.|+..+.|.+.+++++.++.+
T Consensus 241 ~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (608)
T 3j16_B 241 DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDG 320 (608)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHHHHT
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhHHHHHHHhhcc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999888
Q ss_pred CCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH
Q 040300 316 FVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA 395 (605)
Q Consensus 316 ~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~ 395 (605)
+.+.++++++.....++............... .++|++..+.+++++|++.+|++.+||+++|+||||||||||+|+|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 321 HIPAENLRFRTEALQFRIADATEDLQNDSASR-AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp EETTTTEECSSSCCCCCCSSSSCCCCCCSSSS-CCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHH
T ss_pred ccchhhhccccccccccccccccceeeeccce-eEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHh
Confidence 88877777766554444322211101001223 77888776778999999999999999999999999999999999999
Q ss_pred cCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHH
Q 040300 396 GLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQR 475 (605)
Q Consensus 396 Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QR 475 (605)
|+++|++|+. .....++|+||+....+..||.+++.......+.....+.++++.+++.++.++++.+||||||||
T Consensus 400 Gl~~p~~G~~----~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQR 475 (608)
T 3j16_B 400 GALKPDEGQD----IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQR 475 (608)
T ss_dssp TSSCCSBCCC----CCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHH
T ss_pred cCCCCCCCcC----ccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHH
Confidence 9999999963 345679999999877778899998754433334456678899999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChh
Q 040300 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQ 555 (605)
Q Consensus 476 vaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~ 555 (605)
|+|||||+++|+||||||||+|||+.++..++++|+++..+.|+|||+||||++++..+||||++|+|+++...++++|+
T Consensus 476 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 99999999999999999999999999999999999998766699999999999999999999999998777778899999
Q ss_pred hhhccccccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCccccCC
Q 040300 556 SLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLDD 605 (605)
Q Consensus 556 ~~~~~~~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~~~ 605 (605)
++++++|.|++.++++|++||.++||||||++|++|||||++|+|||+|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~s~~d~~q~~~~~~~~~~~ 605 (608)
T 3j16_B 556 SLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNYFFLDN 605 (608)
T ss_dssp EHHHHHHHHHHHHTCCBCCCTTTCCCCBCCSSCSHHHHHHTTTCSCCCSS
T ss_pred HHhhhhhHHHHhcCceeecCCCCCCceEeCCCccccHhHHhcCCeEeecc
Confidence 99999999999999999999999999999999999999999999999985
No 2
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.7e-137 Score=1164.43 Aligned_cols=591 Identities=47% Similarity=0.824 Sum_probs=503.8
Q ss_pred CCceEEEEEeCCCCCccccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecCCcccCC
Q 040300 3 DRLTRIAIVSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDK 81 (605)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl~~~~~~ 81 (605)
|++|||||||+|+|||+||+ +||++|||+||||++||++++++++|+|||+||||||||||||||+||+|+|||++|++
T Consensus 16 ~~~~~~~~~~~~~c~p~~c~~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~e~~c~gc~~~~~~~p~~~i~i~~l~~~~~~ 95 (607)
T 3bk7_A 16 VRKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAISIVNLPEQLDE 95 (607)
T ss_dssp CCCEEEEECCGGGCCTTTSSSCHHHHHCHHHHTTCCSEEEETTTTEEEECTTTCCCCCHHHHHCSSCCCEEEEECTTGGG
T ss_pred cccceEEEeeccccCCCCCChhhHhhhCCCCcCCceEEEEcCCCCcceeeecccCccccccCCCCcceEEEecCCccccC
Confidence 68999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
+++++||.+.+.+++++.+.+||++||+|+||||||||+|+|+|+++|+.|++ .+.|..++..+.|.++++++.....
T Consensus 96 ~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~--~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED--NDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp SEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT--CCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc--ccccchhhheeCCEehhhhhhhhhh
Confidence 99999987667899998779999999999999999999999999999999984 3456555567788888766543322
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD 241 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD 241 (605)
......+.+|++...+..+.+++.+.+.....+++++++++.+||++.+++++.+|||||+|||+||+||+++|++||||
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLD 253 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFD 253 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22333455677665554333345444322222346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCcc
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTEN 321 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~ 321 (605)
||||+||+.++.+++++|+++.++|.|||+||||++++..+||+|++|+++++.||.+..+.+.+++++.++.++.+.++
T Consensus 254 EPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 333 (607)
T 3bk7_A 254 EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDEN 333 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHHHHTEETTTT
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHHHHHHHHhhcchhhh
Confidence 99999999999999999999987799999999999999999999999999999999988888888888888888776666
Q ss_pred cccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCC
Q 040300 322 LRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD 401 (605)
Q Consensus 322 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~ 401 (605)
.+++.....+........ ..... .+.+.+.++.+++++|++.++++.+||+++|+||||||||||+|+|+|+++|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~---~~~~~-~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 334 VRFRPYEIRFTKLSERVD---VERET-LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp EECCSSCCCCCCSTTSCC---CCCCE-EEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred hhccccccccccCCCccc---ccCce-EEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 655544333322211110 00112 45666666667778888888888999999999999999999999999999999
Q ss_pred eeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 402 SVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 402 ~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
+|++. . ...++|+||+....+..||.+++.......+.....+.++++.+++.++.++++.+|||||||||+||||
T Consensus 410 ~G~I~---~-~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 410 EGKVE---W-DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 485 (607)
T ss_dssp BSCCC---C-CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred ceEEE---E-eeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99874 2 4579999999766677899887643201111234567889999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
|+++|+||||||||+|||+.++..++++|+++.++.|+|||+||||++++..+|||+++|+++++.....++|+++++++
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~~ 565 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGM 565 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhhH
Confidence 99999999999999999999999999999998766799999999999999999999999997666666789999999988
Q ss_pred cccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCcccc
Q 040300 562 NLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYL 603 (605)
Q Consensus 562 ~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~ 603 (605)
+.|+..++++++++|.++||++||+||++|||||+.|+|||+
T Consensus 566 ~~~~~~~~~~~~~~~~~~~p~~~~~~s~~d~~q~~~~~~~~~ 607 (607)
T 3bk7_A 566 NRFLASVGITFRRDPDSGRPRANKEGSVKDREQKARGEYYYA 607 (607)
T ss_dssp HHHHTTTTCCEEECTTTCCEEECCTTCHHHHHHHHTTCCBCC
T ss_pred HHHHHhCCeEEEecCCCCcceecCCcchhHHHHHhcCCcccC
Confidence 888888889999999999999999999999999999999996
No 3
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.4e-104 Score=883.59 Aligned_cols=522 Identities=41% Similarity=0.733 Sum_probs=443.8
Q ss_pred cCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 79 LDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 79 ~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++++||||.|+|+|++||++++||++||+||||||||||+|+|+|+++|+.|++...+.|......+.|.+++.++..
T Consensus 1 ~~~~~~~~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 1 MEGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp -CCCEEEESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCCCceecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999998777778887788999988877655
Q ss_pred HHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEE
Q 040300 159 ILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY 238 (605)
Q Consensus 159 ~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl 238 (605)
...........+|+++..+....+++.+.+.....+++++++++.+++.+++++++.+|||||+|||+||+||+++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 43333333445677766655444445444433333456788999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCC
Q 040300 239 MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVP 318 (605)
Q Consensus 239 llDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~ 318 (605)
|||||||+||+.++.+++++|+++.+ |+|||+||||++++..+||+|++|+++++.||....++..+.+++.++.++.+
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 239 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLP 239 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHTEET
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhhhHHHHHHHHHhhhch
Confidence 99999999999999999999999976 99999999999999999999999999999999888888888888889888888
Q ss_pred CcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 319 TENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 319 ~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.++++++.....+................ .+.+.+..+.+++++|++.++++++||++||+||||||||||+|+|+|++
T Consensus 240 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 240 AENMKIRPDEIKFMLKEVSDLDLSKDLKT-KMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTTEECSSSCCCCSCC----------CCE-EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred hhhhhccchhhhccccccccccccccccc-eEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 77776665443332211111000001112 56677777778888999888899999999999999999999999999999
Q ss_pred CCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCC-CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHH
Q 040300 399 KPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSY-THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVA 477 (605)
Q Consensus 399 ~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRva 477 (605)
+|++|++. .....++|+||+....+..||.+++........ .....+.++++.+++.+..++++.+|||||||||+
T Consensus 319 ~p~~G~i~---~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~ 395 (538)
T 3ozx_A 319 TADEGSVT---PEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY 395 (538)
T ss_dssp CCSBCCEE---SSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHH
T ss_pred CCCCcEEE---ECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH
Confidence 99999974 345579999999776677899998754211111 23356788999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 478 LCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 478 iA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
|||||+++|+||||||||+|||+.++..++++|+++.++.|+|||+||||++++..+||||++|+++++.....++|.++
T Consensus 396 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 99999999999999999999999999999999999987779999999999999999999999999888777888999999
Q ss_pred hccccccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCccccCC
Q 040300 558 LTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLDD 605 (605)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~~~ 605 (605)
.+.++.|++.++++|++||.+++|++|+++|++||+||+.|+|||+++
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (538)
T 3ozx_A 476 KTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVL 523 (538)
T ss_dssp HHHHHHHHHHHTCEEEECTTTCCEEEECTTSHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhhcceEEEecCCCCCeEEecCccHHHHHHHhcCceeEeec
Confidence 999999999999999999999999999999999999999999999864
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.7e-98 Score=833.19 Aligned_cols=527 Identities=46% Similarity=0.779 Sum_probs=404.3
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
..|++.|||++++++++++||...+.+.+++.+.+||++||+|+||||||||+|+|+|+++|+.|++ ...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~--~~~~~~~~~~~ 89 (538)
T 1yqt_A 12 SGLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD--NDSWDGVIRAF 89 (538)
T ss_dssp ------------CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT--CCSHHHHHHHT
T ss_pred CCceeccCChhHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc--CcchhhhHHhh
Confidence 4689999999999999999987656788888678999999999999999999999999999999984 22333333456
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAI 227 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaI 227 (605)
.|..++.++...........+.+|++...+....+++.+.+.....++++.++++.+||.+.+++++.+|||||||||+|
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 77776654322211112223445555444432222343333222223467889999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHH
Q 040300 228 AVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVRE 307 (605)
Q Consensus 228 A~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~ 307 (605)
|+||+.+|++||||||||+||+.++.++.++|+++.++|+|||+||||++++..+||+|++|+++.+.|+.+..+++.+.
T Consensus 170 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~ 249 (538)
T 1yqt_A 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN 249 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH
Confidence 99999999999999999999999999999999999878999999999999999999999999988888887777776665
Q ss_pred HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCH
Q 040300 308 GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGK 387 (605)
Q Consensus 308 ~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGK 387 (605)
.+..+..++.+.+..+.+.....+........ ..... .+.+.+..+.+++++|++.+.++++||++||+|||||||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGK 325 (538)
T 1yqt_A 250 GINEFLRGYLKDENVRFRPYEIKFTKTGERVE---IERET-LVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325 (538)
T ss_dssp HHHHHHHTEETTTTEECSSSCCCCCCSSGGGS---SCCCE-EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSH
T ss_pred HHHHHhhhccchhhhcccccccccccCCcccc---cCCCe-EEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCH
Confidence 55555544333222221211111111110000 00111 355555555566778888888888889999999999999
Q ss_pred HHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCc
Q 040300 388 TTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN 467 (605)
Q Consensus 388 STLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 467 (605)
|||+|+|+|+++|++|++. . ...++|+||+....+..||.+++.......+.....+.++++.+++.+..++++.+
T Consensus 326 STLlk~l~Gl~~p~~G~i~---~-~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 401 (538)
T 1yqt_A 326 TTFVKMLAGVEEPTEGKIE---W-DLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE 401 (538)
T ss_dssp HHHHHHHHTSSCCSBCCCC---C-CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGG
T ss_pred HHHHHHHhCCCCCCCeEEE---E-CceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhh
Confidence 9999999999999999974 2 45699999997666678998776432011112345678899999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcce
Q 040300 468 LSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSV 547 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~ 547 (605)
|||||||||+|||||+++|++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.+.
T Consensus 402 LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~ 481 (538)
T 1yqt_A 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGK 481 (538)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcce
Confidence 99999999999999999999999999999999999999999999987556999999999999999999999999975555
Q ss_pred eeecCChhhhhccccccceecceEEEecCCCCcceeecCCCCCcHhhhhcCCccccC
Q 040300 548 DCVANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKAAGSYYYLD 604 (605)
Q Consensus 548 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~rpr~n~~~s~~~~~~~~~~~~~~~~ 604 (605)
....++|+++++.++.++..++++++++|.+++|++|+++|++|||||+.|+|||++
T Consensus 482 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (538)
T 1yqt_A 482 YGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKEGSVKDREQKEKGEYYYIA 538 (538)
T ss_dssp EEEECCCEEHHHHHHHHHHTTTCCEEECTTTCCEEECCTTCHHHHHHHHHTCCBCCC
T ss_pred EeecCCHHHHHhhHHHHHhhcCeEEEecCCCCceeeccccchhhHHHHhhcCceecC
Confidence 566799999998766566667778888888999999999999999999999999985
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.9e-65 Score=596.25 Aligned_cols=416 Identities=20% Similarity=0.307 Sum_probs=281.7
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++||.. ..|.+++ .+.+|+++||+|+||||||||+|+|+| |.+.+.+..... .
T Consensus 440 ~ls~~yg~~-~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i~g~~~~~~~-~--------------- 496 (986)
T 2iw3_A 440 EFSLAYGAK-ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQVDGFPTQEEC-R--------------- 496 (986)
T ss_dssp EEEEEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCSTTCCCTTTS-C---------------
T ss_pred eEEEEECCE-EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCcCCCccccce-e---------------
Confidence 456778754 3455555 357999999999999999999999995 322111100000 0
Q ss_pred HHHHHHhhccccc-ccchh-hhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 161 EDNLKAIIKPQYV-DHIPK-AVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 161 ~~~~~~~~~~q~~-~~~~~-~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
..+.+|.. ...+. .+...+...+... ++++.++++.+||. +.+++++.+||||||||++||+||+.+|++
T Consensus 497 -----~~~v~q~~~~~~~~ltv~e~l~~~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l 569 (986)
T 2iw3_A 497 -----TVYVEHDIDGTHSDTSVLDFVFESGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI 569 (986)
T ss_dssp -----EEETTCCCCCCCTTSBHHHHHHTTCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE
T ss_pred -----EEEEcccccccccCCcHHHHHHHhhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 00001110 00000 0000010000001 45688899999994 789999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCcccc-c-cccccchhhHHHHHhhhcC
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGA-Y-GVVTLPFSVREGINIFLAG 315 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~-~-g~~~~~~~~r~~i~~~l~g 315 (605)
||||||||+||+.++.++.++|++ .|.|||+||||++++..+||+|++|.++... | |....-.........+..
T Consensus 570 LLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~~~~~~- 645 (986)
T 2iw3_A 570 LLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEE- 645 (986)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGGGGSSS-
T ss_pred EEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHHHHHHh-
Confidence 999999999999999999999988 4899999999999999999999999754321 1 211000000000000000
Q ss_pred CCCCcccc--cccccccccccCCCcchhhhhhhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHH
Q 040300 316 FVPTENLR--FRDESLTFRVAETPQESAEEIETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIR 392 (605)
Q Consensus 316 ~~~~e~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk 392 (605)
+...... +............... ....++. +++|++. ...+++++|++..| |+++|+||||||||||+|
T Consensus 646 -l~~~~~~~~~p~~~~~~~~~~~~~~-mL~v~nL-s~~Y~g~~~~iL~dVSl~I~~G-----eivaIiGpNGSGKSTLLk 717 (986)
T 2iw3_A 646 -LSNTDLEFKFPEPGYLEGVKTKQKA-IVKVTNM-EFQYPGTSKPQITDINFQCSLS-----SRIAVIGPNGAGKSTLIN 717 (986)
T ss_dssp -TTTCCCCCCCCCCCCCTTCCSTTSE-EEEEEEE-EECCTTCSSCSEEEEEEEEETT-----CEEEECSCCCHHHHHHHH
T ss_pred -hhhhhhhccccccccccccccCCCc-eEEEEee-EEEeCCCCceeeeccEEEEcCC-----CEEEEECCCCCCHHHHHH
Confidence 0000000 0000000000000111 1222334 7788642 34689999999888 689999999999999999
Q ss_pred HHHcCCCCCeeeeeccccCcceeEeecCcCC----CCCcCcHHHHHHhhh------------------------------
Q 040300 393 MLAGLLKPDSVEDSDVEIPEFNVSYKPQKIS----PKFQSTVRHLLHQKI------------------------------ 438 (605)
Q Consensus 393 ~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~----~~~~~tv~~~~~~~~------------------------------ 438 (605)
+|+|+++|++|++.. ....+++|++|+.. .....|+.+++....
T Consensus 718 lLaGll~P~sG~I~~--~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~ 795 (986)
T 2iw3_A 718 VLTGELLPTSGEVYT--HENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKI 795 (986)
T ss_dssp HHTTSSCCSEEEEEE--CTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEE
T ss_pred HHhCCCCCCceEEEE--cCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhccccc
Confidence 999999999999852 12346899988631 111234443321000
Q ss_pred --------------------------------------------------------------------------c-cCCC
Q 040300 439 --------------------------------------------------------------------------R-DSYT 443 (605)
Q Consensus 439 --------------------------------------------------------------------------~-~~~~ 443 (605)
. ....
T Consensus 796 ~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~ 875 (986)
T 2iw3_A 796 EGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPL 875 (986)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred ccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchh
Confidence 0 0001
Q ss_pred CHHHHHHHHhhcCCch-h-hccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 040300 444 HPQFVSDVMKPLLIEQ-L-MDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521 (605)
Q Consensus 444 ~~~~~~~~l~~l~l~~-~-~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 521 (605)
....+.++++.+|+.. . .++++.+|||||||||+|||||+++|+||||||||+|||+.++..+.+.|+++ +.||
T Consensus 876 ~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tV 951 (986)
T 2iw3_A 876 TRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGV 951 (986)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEE
T ss_pred HHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEE
Confidence 1345678899999975 4 68999999999999999999999999999999999999999999988888764 6799
Q ss_pred EEEecCHHHHHhhcCEEEEEeCCc
Q 040300 522 FVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 522 ivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|+||||++++..+|||+++|+++.
T Consensus 952 IiISHD~e~v~~l~DrVivL~~G~ 975 (986)
T 2iw3_A 952 IIITHSAEFTKNLTEEVWAVKDGR 975 (986)
T ss_dssp EEECSCHHHHTTTCCEEECCBTTB
T ss_pred EEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999998654
No 6
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6e-62 Score=591.34 Aligned_cols=205 Identities=23% Similarity=0.345 Sum_probs=163.1
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+++|++. ...+++++|++.+| |++||+||||||||||+++|+|+++|++|++. +.++. +..++|
T Consensus 1037 ~~~y~~~~~~~~l~~vsl~i~~G-----e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 1111 (1284)
T 3g5u_A 1037 VFNYPTRPSIPVLQGLSLEVKKG-----QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111 (1284)
T ss_dssp EBCCSCGGGCCSBSSCCEEECSS-----SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEE
T ss_pred EEECCCCCCCeeecceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEE
Confidence 5667643 23678889988888 79999999999999999999999999999986 22222 235999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccC-----------cCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE-----------VVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-----------~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++. .|..|+++++.............+.+.++..++.++.++. ..+|||||||||+|||||+++|
T Consensus 1112 v~Q~~~-l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p 1190 (1284)
T 3g5u_A 1112 VSQEPI-LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP 1190 (1284)
T ss_dssp EESSCC-CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred ECCCCc-cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCC
Confidence 999974 4678999998643222122344556666666666554433 4689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
+||||||||++||++++..+.+.|+++ . .|+|+|+||||++++.. ||||+||+++.. ...|+|++++.....|
T Consensus 1191 ~iLiLDEpTs~lD~~~~~~i~~~l~~~-~-~~~tvi~isH~l~~i~~-~dri~vl~~G~i--~~~g~~~~l~~~~g~y 1263 (1284)
T 3g5u_A 1191 HILLLDEATSALDTESEKVVQEALDKA-R-EGRTCIVIAHRLSTIQN-ADLIVVIQNGKV--KEHGTHQQLLAQKGIY 1263 (1284)
T ss_dssp SSEEEESCSSSCCHHHHHHHHHHHHHH-S-SSSCEEEECSCTTGGGS-CSEEEEEETBEE--EEEECHHHHHHSCSHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHhCCCHH
Confidence 999999999999999999999999985 3 48999999999999865 999999997654 4569999998764334
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.5e-62 Score=558.47 Aligned_cols=332 Identities=23% Similarity=0.304 Sum_probs=225.6
Q ss_pred HHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecC
Q 040300 199 DLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD 275 (605)
Q Consensus 199 ~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHd 275 (605)
++++.+||.+. +++++.+|||||||||+|||||+++|+ +||||||||+||+..+.++.++|+++.++|.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46888999875 799999999999999999999999998 999999999999999999999999998789999999999
Q ss_pred HhHHHhhcCEEEEEeCccc-cccccccchhhHH-------HHHhhhcCCCCCcccccccccccccccCCCcchhhhhhhh
Q 040300 276 LSVLDYLSDFICCLYGKPG-AYGVVTLPFSVRE-------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEEIETY 347 (605)
Q Consensus 276 l~~l~~~~D~i~vl~g~~~-~~g~~~~~~~~r~-------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~~ 347 (605)
++++.. ||+|++|..+.+ ..|.+....+..+ ....|+.+... .. ....... ....
T Consensus 264 ~~~~~~-~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~----~~~~ 326 (670)
T 3ux8_A 264 EDTMLA-ADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKF---IP---------IPAERRR----PDGR 326 (670)
T ss_dssp HHHHHH-CSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHHTTSSC---CC---------CCSSCCC----CCSC
T ss_pred HHHHhh-CCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHhccccc---cc---------ccccccc----cccc
Confidence 998764 999999931110 0111111111111 11122221100 00 0000000 0001
Q ss_pred eeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH----------------------cCCCCCeee
Q 040300 348 ARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA----------------------GLLKPDSVE 404 (605)
Q Consensus 348 ~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~----------------------Gl~~p~~G~ 404 (605)
.+.+.+. ...+++++|++.+| |+++|+||||||||||+++|+ |+..++ +.
T Consensus 327 -~~~~~~~~~~~L~~vsl~I~~G-----e~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~-~~ 399 (670)
T 3ux8_A 327 -WLEVVGAREHNLKNVSVKIPLG-----TFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD-KV 399 (670)
T ss_dssp -EEEEEEECSTTCCSEEEEEETT-----SEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCS-EE
T ss_pred -ceeecCccccccccceeEecCC-----CEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccC-ce
Confidence 2222211 12578999999988 689999999999999998754 222221 11
Q ss_pred ee--cccc---Cc---------------------------------------------ceeEeecCcCC-----------
Q 040300 405 DS--DVEI---PE---------------------------------------------FNVSYKPQKIS----------- 423 (605)
Q Consensus 405 i~--~~~~---~~---------------------------------------------~~i~y~~q~~~----------- 423 (605)
+. .... +. ...++++|+..
T Consensus 400 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~ 479 (670)
T 3ux8_A 400 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 479 (670)
T ss_dssp EECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTT
T ss_pred eEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeeccccccccccccc
Confidence 11 0000 00 00011111100
Q ss_pred ---------------------CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHHH
Q 040300 424 ---------------------PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 424 ---------------------~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~a 481 (605)
....+|+.+++.... .........+.+..+++.. ..++++.+|||||||||+||||
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 480 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp TTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTT--TCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHH
T ss_pred ccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHH--HhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHH
Confidence 001245555543211 1111234567788889874 5689999999999999999999
Q ss_pred HccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE------eCCcceeeecC
Q 040300 482 LGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY------EGQPSVDCVAN 552 (605)
Q Consensus 482 L~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~------~g~~~~~~~~~ 552 (605)
|+++| +||||||||+|||+.++..++++|+++.+ .|.|||+||||++++. .||||++| +++. ....+
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~--i~~~g 633 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQ--IVAVG 633 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCE--EEEEE
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCE--EEEec
Confidence 99887 49999999999999999999999999865 4999999999999885 59999999 4333 35678
Q ss_pred Chhhhhcc
Q 040300 553 APQSLLTG 560 (605)
Q Consensus 553 ~p~~~~~~ 560 (605)
+|+++...
T Consensus 634 ~~~~~~~~ 641 (670)
T 3ux8_A 634 TPEEVAEV 641 (670)
T ss_dssp CHHHHHTC
T ss_pred CHHHHHhC
Confidence 99998654
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.2e-57 Score=551.10 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=163.7
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+|+||+. .+++++++|++.+| |.+||+||+|||||||+++|.|+++|++|+|. +.++. +.+++|
T Consensus 1083 sf~Y~~~~~~~VL~~isl~I~~G-----e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~ 1157 (1321)
T 4f4c_A 1083 RFAYPERPEIEILKGLSFSVEPG-----QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157 (1321)
T ss_dssp EECCTTSCSSCSEEEEEEEECTT-----CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE
T ss_pred EEeCCCCCCCccccceeEEECCC-----CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5677643 24688999998888 79999999999999999999999999999986 33332 235999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-------ccC----cCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-------DQE----VVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~----~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++. .|..|+++|+.........+.+.+.++++..++.++. |.. -.+||||||||++|||||+++|
T Consensus 1158 V~Qdp~-LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~ 1236 (1321)
T 4f4c_A 1158 VSQEPT-LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNP 1236 (1321)
T ss_dssp ECSSCC-CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCC
T ss_pred ECCCCE-eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCC
Confidence 999975 5789999998543211122345677778877776543 333 3579999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
+|||||||||+||+++...+.+.|+++. .++|+|+|+|.+..+.. ||||+||+++.. ...|+|++++.....|
T Consensus 1237 ~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~I--vE~Gth~eLl~~~g~y 1309 (1321)
T 4f4c_A 1237 KILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTI--IEKGTHTQLMSEKGAY 1309 (1321)
T ss_dssp SEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTT-CSEEEEESSSSE--EEEECHHHHHHCC---
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhCCcHH
Confidence 9999999999999999999999999863 48999999999998865 999999997665 4569999998764333
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3e-50 Score=468.40 Aligned_cols=336 Identities=25% Similarity=0.334 Sum_probs=229.9
Q ss_pred HHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEE
Q 040300 196 MKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVV 272 (605)
Q Consensus 196 ~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivv 272 (605)
+..+.+..+||..+ ++|++.+|||||+|||+||+||+++|+ +|||||||++||+..+.++.++|++|.+.|.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34567888999865 799999999999999999999999887 999999999999999999999999998889999999
Q ss_pred ecCHhHHHhhcCEEEEEeCcccc-ccccccchhhHH--------HHHhhhcCCCCCcccccccccccccccCCCcchhhh
Q 040300 273 EHDLSVLDYLSDFICCLYGKPGA-YGVVTLPFSVRE--------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAEE 343 (605)
Q Consensus 273 sHdl~~l~~~~D~i~vl~g~~~~-~g~~~~~~~~r~--------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~~ 343 (605)
|||++++.. ||+|++|..+.+. .|.+....+..+ ....|+.+... .. .......
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l~~~~~----------~~--~~~~~~~---- 585 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRK----------IT--VNKTRRL---- 585 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHHHSSSC----------CC--CCSSCCC----
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCchhcchhhhhhcccc----------cc--ccccccc----
Confidence 999999876 9999999322111 111111111111 11122222110 00 0000000
Q ss_pred hhhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHH---------HHHHcCCCCC------eeeee-
Q 040300 344 IETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFI---------RMLAGLLKPD------SVEDS- 406 (605)
Q Consensus 344 ~~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLl---------k~L~Gl~~p~------~G~i~- 406 (605)
... .+.+.+. ...+++++|++..| |+++|+|+||||||||+ +++.|...+. +|...
T Consensus 586 -~~~-~l~v~~~~~~~Lk~Vsl~I~~G-----eiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i 658 (916)
T 3pih_A 586 -PYA-SLKIKGVRHNNLKNIDVEIPLG-----VFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENI 658 (916)
T ss_dssp -CSS-EEEEEEECSTTCCSEEEEEESS-----SEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGC
T ss_pred -ccc-eEEEeeeccccccccceEEcCC-----cEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccc
Confidence 000 2222211 12478999999888 68999999999999997 4454443332 22100
Q ss_pred ------c-ccc---C---------------------------------------------cceeEeecCcCCCC------
Q 040300 407 ------D-VEI---P---------------------------------------------EFNVSYKPQKISPK------ 425 (605)
Q Consensus 407 ------~-~~~---~---------------------------------------------~~~i~y~~q~~~~~------ 425 (605)
+ ..+ + ....+|++++....
T Consensus 659 ~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~ 738 (916)
T 3pih_A 659 DKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVE 738 (916)
T ss_dssp CEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEE
T ss_pred cceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceee
Confidence 0 000 0 00012222221110
Q ss_pred --------------------------CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHH
Q 040300 426 --------------------------FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 426 --------------------------~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvai 478 (605)
..+|+.+.+... ........+.++++.+||.. .+++++.+|||||+|||+|
T Consensus 739 c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~--~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~L 816 (916)
T 3pih_A 739 CDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFF--KNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKL 816 (916)
T ss_dssp CTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHT--TTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHH
T ss_pred cccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHH--hcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHH
Confidence 112343333211 00111234567899999985 4689999999999999999
Q ss_pred HHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE------eCCcceee
Q 040300 479 CLCLGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY------EGQPSVDC 549 (605)
Q Consensus 479 A~aL~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~------~g~~~~~~ 549 (605)
||||+++| +||||||||+|||+.++..++++|+++.+ .|.|||+||||++++.. ||||++| +++ ...
T Consensus 817 AraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G--~Iv 892 (916)
T 3pih_A 817 ASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGG--YIV 892 (916)
T ss_dssp HHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCC--EEE
T ss_pred HHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCC--EEE
Confidence 99999875 79999999999999999999999999864 59999999999999865 9999999 443 345
Q ss_pred ecCChhhhhccc
Q 040300 550 VANAPQSLLTGM 561 (605)
Q Consensus 550 ~~~~p~~~~~~~ 561 (605)
+.|+|+++....
T Consensus 893 ~~Gtpeel~~~~ 904 (916)
T 3pih_A 893 ATGTPEEIAKNP 904 (916)
T ss_dssp EEESHHHHHSCT
T ss_pred EEcCHHHHHhCC
Confidence 789999998753
No 10
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=3.2e-49 Score=456.74 Aligned_cols=338 Identities=25% Similarity=0.319 Sum_probs=231.4
Q ss_pred HHHHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEE
Q 040300 194 RDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270 (605)
Q Consensus 194 ~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvi 270 (605)
.+++ +.+..+||..+ ++|++.+|||||+|||+||++|+.+| ++|||||||++||+..+.+++++|++|.+.|.|||
T Consensus 482 ~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVI 560 (972)
T 2r6f_A 482 RDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLI 560 (972)
T ss_dssp HHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred HHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3444 46889999875 89999999999999999999999985 99999999999999999999999999988899999
Q ss_pred EEecCHhHHHhhcCEEEEEeCccccc-cccc--c-chhh----HHHHHhhhcCCCCCcccccccccccccccCCCcchhh
Q 040300 271 VVEHDLSVLDYLSDFICCLYGKPGAY-GVVT--L-PFSV----REGINIFLAGFVPTENLRFRDESLTFRVAETPQESAE 342 (605)
Q Consensus 271 vvsHdl~~l~~~~D~i~vl~g~~~~~-g~~~--~-~~~~----r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~ 342 (605)
+||||++++. .||+|++|..+.|.. |.+. . +... ......++.|.... ..... ....... ..
T Consensus 561 vVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~slt~~~l~g~~~~---~~~~~-----~~~~~~~-~L 630 (972)
T 2r6f_A 561 VVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFI---PIPAE-----RRRPDGR-WL 630 (972)
T ss_dssp EECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCTTHHHHHTSSCC---CCCSS-----CCCCCSC-EE
T ss_pred EEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHHHHHHhcCCccc---cCccc-----cccccce-EE
Confidence 9999999986 699999993211111 1110 0 0000 00111222221110 00000 0000001 00
Q ss_pred hhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH-cCC-------CCCeeee---ec----
Q 040300 343 EIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA-GLL-------KPDSVED---SD---- 407 (605)
Q Consensus 343 ~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~-Gl~-------~p~~G~i---~~---- 407 (605)
..+ ..+. ..+++++|++..| |+++|+|+||||||||+++|+ |.+ .+..|.+ .+
T Consensus 631 ~v~---~l~~----~~Lk~Vsl~I~~G-----eiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~ 698 (972)
T 2r6f_A 631 EVV---GARE----HNLKNVSVKIPLG-----TFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL 698 (972)
T ss_dssp EEE---EECS----SSCCSEEEEEESS-----SEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGC
T ss_pred EEe---cCcc----cccccceEEEcCC-----CEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccccc
Confidence 001 1111 2478899998888 789999999999999999853 321 1222321 00
Q ss_pred --------ccc---C-----------------------cceeEeecCcCCCCC---------------------------
Q 040300 408 --------VEI---P-----------------------EFNVSYKPQKISPKF--------------------------- 426 (605)
Q Consensus 408 --------~~~---~-----------------------~~~i~y~~q~~~~~~--------------------------- 426 (605)
..+ + ...++|++|..++..
T Consensus 699 ~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ 778 (972)
T 2r6f_A 699 DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVP 778 (972)
T ss_dssp SEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEE
T ss_pred ceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccc
Confidence 000 0 012456666432210
Q ss_pred ---------------------------cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHH
Q 040300 427 ---------------------------QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 427 ---------------------------~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvai 478 (605)
.+|+.+.+... ..........++++.++|.. .+++++.+|||||||||+|
T Consensus 779 ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~--~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~L 856 (972)
T 2r6f_A 779 CEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFF--ASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKL 856 (972)
T ss_dssp CTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHT--CSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHH
T ss_pred ccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHH--hcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHH
Confidence 12333332210 00111123467899999987 7899999999999999999
Q ss_pred HHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe------CCcceee
Q 040300 479 CLCLGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE------GQPSVDC 549 (605)
Q Consensus 479 A~aL~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~------g~~~~~~ 549 (605)
|++|+++| +||||||||+|||+.++..++++|+++.+ .|.|||+||||++++. .||||++|. ++. ..
T Consensus 857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~G~--Iv 932 (972)
T 2r6f_A 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQ--IV 932 (972)
T ss_dssp HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHT-TCSEEEEECSSSTTSCCS--EE
T ss_pred HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCCCE--EE
Confidence 99999865 99999999999999999999999999864 5999999999999984 799999993 332 34
Q ss_pred ecCChhhhhcc
Q 040300 550 VANAPQSLLTG 560 (605)
Q Consensus 550 ~~~~p~~~~~~ 560 (605)
..++|+++...
T Consensus 933 ~~g~~~el~~~ 943 (972)
T 2r6f_A 933 AVGTPEEVAEV 943 (972)
T ss_dssp EEESHHHHHTC
T ss_pred EecCHHHHHhC
Confidence 67889988764
No 11
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=5.7e-49 Score=454.22 Aligned_cols=338 Identities=22% Similarity=0.296 Sum_probs=230.1
Q ss_pred HHHHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEE
Q 040300 194 RDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270 (605)
Q Consensus 194 ~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvi 270 (605)
..+++ .+..+||.++ +++++.+|||||+|||+||++|+.+|+ +|||||||++||+..+.+++++|++|.+.|.|||
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVI 435 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLF 435 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 34444 6788999876 899999999999999999999999995 9999999999999999999999999988899999
Q ss_pred EEecCHhHHHhhcCEEEEEeCccccc-cc--ccc-chhh----HHHHHhhhcCCCCCcccccccccccccccCCCcchhh
Q 040300 271 VVEHDLSVLDYLSDFICCLYGKPGAY-GV--VTL-PFSV----REGINIFLAGFVPTENLRFRDESLTFRVAETPQESAE 342 (605)
Q Consensus 271 vvsHdl~~l~~~~D~i~vl~g~~~~~-g~--~~~-~~~~----r~~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~ 342 (605)
+||||++++. .||+|++|..+.+.. |. ... +... ......++.+..+.. .. ....... ..
T Consensus 436 vVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~~l~~~~~~~-----~~-----~~~~~~~-~L 503 (842)
T 2vf7_A 436 VVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFADRHTE-----PH-----TPREPAG-WL 503 (842)
T ss_dssp EECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCHHHHHHHTCCCCC-----CC-----CCCCCSC-EE
T ss_pred EEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhchHHHHHHHhhhccccc-----cc-----ccCCCCc-eE
Confidence 9999999876 699999993211110 11 110 1111 011122333221110 00 0000011 00
Q ss_pred hhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHH-HHcCC-------CCC-------------
Q 040300 343 EIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRM-LAGLL-------KPD------------- 401 (605)
Q Consensus 343 ~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~-L~Gl~-------~p~------------- 401 (605)
..+ ..++. .+++++|++..| |+++|+|+||||||||+++ |+|++ +|+
T Consensus 504 ~v~---~l~~~----~L~~vsl~i~~G-----eiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~ 571 (842)
T 2vf7_A 504 ELN---GVTRN----NLDNLDVRFPLG-----VMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTA 571 (842)
T ss_dssp EEE---EEEET----TEEEEEEEEESS-----SEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------
T ss_pred EEE---eeeec----ccccceEEEcCC-----CEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc
Confidence 011 12221 378888888888 7899999999999999996 77554 342
Q ss_pred -----ee-------eee--cccc---Cc-----------------------ceeEeecCcCCCC----------------
Q 040300 402 -----SV-------EDS--DVEI---PE-----------------------FNVSYKPQKISPK---------------- 425 (605)
Q Consensus 402 -----~G-------~i~--~~~~---~~-----------------------~~i~y~~q~~~~~---------------- 425 (605)
+| .+. ...+ +. ..++|.++..++.
T Consensus 572 ~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~ 651 (842)
T 2vf7_A 572 GSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVM 651 (842)
T ss_dssp CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEE
T ss_pred ccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccc
Confidence 34 111 0000 00 0012222111100
Q ss_pred ------------------------------CcCcHHHHHHhhhc------cCCCCHHHHHHHHhhcCCch-hhccCcCcC
Q 040300 426 ------------------------------FQSTVRHLLHQKIR------DSYTHPQFVSDVMKPLLIEQ-LMDQEVVNL 468 (605)
Q Consensus 426 ------------------------------~~~tv~~~~~~~~~------~~~~~~~~~~~~l~~l~l~~-~~~~~~~~L 468 (605)
...++.+++..... ........+.++++.++|.. .+++++.+|
T Consensus 652 ~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~L 731 (842)
T 2vf7_A 652 VELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATEL 731 (842)
T ss_dssp ETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGC
T ss_pred hhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccC
Confidence 01233333321110 00011234678899999987 469999999
Q ss_pred ChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe---
Q 040300 469 SGGELQRVALCLCLGKP---ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE--- 542 (605)
Q Consensus 469 SGGe~QRvaiA~aL~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~--- 542 (605)
||||||||+||++|+++ |+||||||||+|||+..+..++++|+++.+ .|.|||+||||++++ .+||||++|.
T Consensus 732 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl~~i-~~aDrii~L~p~~ 809 (842)
T 2vf7_A 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKMQVV-AASDWVLDIGPGA 809 (842)
T ss_dssp CHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence 99999999999999996 799999999999999999999999999864 599999999999999 6899999993
Q ss_pred ---CCcceeeecCChhhhhcc
Q 040300 543 ---GQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 543 ---g~~~~~~~~~~p~~~~~~ 560 (605)
++. ....++|+++...
T Consensus 810 g~~~G~--Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 810 GEDGGR--LVAQGTPAEVAQA 828 (842)
T ss_dssp GGGCCS--EEEEECHHHHTTC
T ss_pred CCCCCE--EEEEcCHHHHHhC
Confidence 332 2456888888764
No 12
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.1e-48 Score=453.81 Aligned_cols=341 Identities=21% Similarity=0.281 Sum_probs=231.9
Q ss_pred HHHHHHHHhhcCCchh-hcccCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEE
Q 040300 194 RDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFAIAVVAVQN--AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270 (605)
Q Consensus 194 ~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRvaIA~aL~~~--p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvi 270 (605)
..++ +.+..+||..+ ++|++.+|||||+|||+||++|+.+ |++|||||||++||+..+.+++++|++|.+.|.|||
T Consensus 499 ~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVI 577 (993)
T 2ygr_A 499 RSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLI 577 (993)
T ss_dssp HHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 3444 45788999876 8999999999999999999999999 589999999999999999999999999988899999
Q ss_pred EEecCHhHHHhhcCEEEEEeCccccc-cccccchhhHH-------HHHhhhcCCCCCcccccccccccccccCCCcchhh
Q 040300 271 VVEHDLSVLDYLSDFICCLYGKPGAY-GVVTLPFSVRE-------GINIFLAGFVPTENLRFRDESLTFRVAETPQESAE 342 (605)
Q Consensus 271 vvsHdl~~l~~~~D~i~vl~g~~~~~-g~~~~~~~~r~-------~i~~~l~g~~~~e~~~~r~~~~~~~~~~~~~~~~~ 342 (605)
+||||++++. .||+|++|..+.|.. |.+....+..+ ....++.|.... ..... +....... ..
T Consensus 578 vVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~~~~lt~~~l~g~~~~---~~~~~----~~~~~~~~-~L 648 (993)
T 2ygr_A 578 VVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRESI---EIPAI----RRSVDPRR-QL 648 (993)
T ss_dssp EECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHHCTTCHHHHHHHTSSCC---CCCSS----CCCCCSSS-EE
T ss_pred EECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhhhhHHHHHHHhccCccc---cCccc----cccCCCCc-eE
Confidence 9999999987 699999994222111 11111111111 111233332110 00000 00000001 10
Q ss_pred hhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH-c----CCC---CCeeee---ec----
Q 040300 343 EIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA-G----LLK---PDSVED---SD---- 407 (605)
Q Consensus 343 ~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~-G----l~~---p~~G~i---~~---- 407 (605)
..+ .++. ..+++++|++..| |+++|+|+||||||||+++|. | .+. +..|.+ .+
T Consensus 649 ~v~---~l~~----~~Lk~Vsl~I~~G-----eivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~ 716 (993)
T 2ygr_A 649 TVV---GARE----HNLRGIDVSFPLG-----VLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYL 716 (993)
T ss_dssp EEE---EECS----TTCCSEEEEEESS-----SEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTC
T ss_pred EEe---cCcc----ccccCceEEECCC-----CEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCcccc
Confidence 001 1111 1478899999888 789999999999999999853 3 222 122321 00
Q ss_pred --------ccc---C-----------------------cceeEeecCcCCCCC---------------------------
Q 040300 408 --------VEI---P-----------------------EFNVSYKPQKISPKF--------------------------- 426 (605)
Q Consensus 408 --------~~~---~-----------------------~~~i~y~~q~~~~~~--------------------------- 426 (605)
..+ + ...++|++|..++..
T Consensus 717 ~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ 796 (993)
T 2ygr_A 717 DKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVP 796 (993)
T ss_dssp SEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEE
T ss_pred ceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceee
Confidence 000 0 012355555432110
Q ss_pred ---------------------------cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHH
Q 040300 427 ---------------------------QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVAL 478 (605)
Q Consensus 427 ---------------------------~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvai 478 (605)
.+|+.+.+... ..........++++.++|.. .+++++.+|||||+|||+|
T Consensus 797 ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~--~~~~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~L 874 (993)
T 2ygr_A 797 CEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFF--EPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKL 874 (993)
T ss_dssp CTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHS--TTCHHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHH
T ss_pred ehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHh--hcchHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHH
Confidence 11233322110 00111123457899999987 7899999999999999999
Q ss_pred HHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC----Ccceeeec
Q 040300 479 CLCLGKPA---DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG----QPSVDCVA 551 (605)
Q Consensus 479 A~aL~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g----~~~~~~~~ 551 (605)
|++|+++| +||||||||+|||+..+..++++|+++.. .|.|||+||||++++ ..||||++|.. ..+.....
T Consensus 875 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 875 ASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp HHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEE
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEe
Confidence 99999865 99999999999999999999999999864 599999999999998 57999999931 11333567
Q ss_pred CChhhhhcc
Q 040300 552 NAPQSLLTG 560 (605)
Q Consensus 552 ~~p~~~~~~ 560 (605)
++|+++...
T Consensus 953 G~~~el~~~ 961 (993)
T 2ygr_A 953 GTPEDVAAV 961 (993)
T ss_dssp ECHHHHHHC
T ss_pred cCHHHHHhC
Confidence 899998764
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.5e-42 Score=353.93 Aligned_cols=226 Identities=23% Similarity=0.354 Sum_probs=183.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|++
T Consensus 18 ~~~~~~-~~vL~~vsl~i~~G-----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~ 91 (266)
T 4g1u_C 18 HYHVQQ-QALINDVSLHIASG-----EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMR 91 (266)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred EEEeCC-eeEEEeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEe
Confidence 778875 35799999999988 68999999999999999999999999999985 22221 12489999
Q ss_pred CcCCCCCcCcHHHHHHhhhcc--CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc------CCCEEEE
Q 040300 420 QKISPKFQSTVRHLLHQKIRD--SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK------PADIYLI 491 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~------~p~lllL 491 (605)
|+....+..||.+++...... .......+.++++.+++.++.++++.+|||||||||+|||||++ +|++|||
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEE
T ss_pred cCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 997776788999988643221 11224567889999999999999999999999999999999999 9999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccccc-cceecce
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNL-FLSHLDI 570 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~-~l~~~~~ 570 (605)
||||+|||+.++..++++|+++.++.+.|||+||||++++..+||||++|+++.. ...++|+++++..+. -+.....
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i--~~~g~~~~~~~~~~l~~~~~~~~ 249 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKL--VACGTPEEVLNAETLTQWYQADL 249 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHCCHHHHHHHCCSCE
T ss_pred eCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEEcCHHHHhCcHHHHHHhCCCc
Confidence 9999999999999999999999766578999999999999999999999986543 466899998775321 1223444
Q ss_pred EEEecCCCCcce
Q 040300 571 TFRRDPTNFRPR 582 (605)
Q Consensus 571 ~~~~~~~~~rpr 582 (605)
.+..++..+.|.
T Consensus 250 ~~~~~~~~~~~~ 261 (266)
T 4g1u_C 250 GVSRHPESALPQ 261 (266)
T ss_dssp EEEECSSSSSEE
T ss_pred EEeecCCCCceE
Confidence 555555444443
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.5e-43 Score=359.14 Aligned_cols=205 Identities=22% Similarity=0.311 Sum_probs=172.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--C-------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--P-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~-------~~~i~y 417 (605)
+++|++....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ . ...++|
T Consensus 14 s~~y~~~~~~L~~isl~i~~G-----e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~ 88 (275)
T 3gfo_A 14 NYNYSDGTHALKGINMNIKRG-----EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI 88 (275)
T ss_dssp EEECTTSCEEEEEEEEEEETT-----SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEE
T ss_pred EEEECCCCeEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEE
Confidence 788875445799999999988 68999999999999999999999999999986 3222 1 135999
Q ss_pred ecCcCC-CCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKIS-PKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~-~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+||++. ..+..||.+++....... ... ...+.++++.+++.++.++++.+|||||||||+|||||+++|++||||
T Consensus 89 v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD 168 (275)
T 3gfo_A 89 VFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD 168 (275)
T ss_dssp ECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999863 345789999875432211 111 245778999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.. ...++|+++++.
T Consensus 169 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i--~~~g~~~~~~~~ 234 (275)
T 3gfo_A 169 EPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV--ILQGNPKEVFAE 234 (275)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEE--EEEECHHHHTHH
T ss_pred CccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHhcC
Confidence 999999999999999999998633499999999999999999999999986543 467899998765
No 15
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.3e-42 Score=367.09 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=174.1
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----------cc
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----------EF 413 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----------~~ 413 (605)
+++|+.. ..++++++|++.+| |++||+||||||||||+|+|+|+++|++|++. +..+. +.
T Consensus 31 s~~y~~~~~~~~aL~~vsl~i~~G-----ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 105 (366)
T 3tui_C 31 TKVFHQGTRTIQALNNVSLHVPAG-----QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR 105 (366)
T ss_dssp EEEEECSSSEEEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHT
T ss_pred EEEeCCCCCCeEEEEeeEEEEcCC-----CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhC
Confidence 6777532 34689999999888 78999999999999999999999999999985 22221 13
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEE
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY 489 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll 489 (605)
+|+|+||+....+..||++++...... ... ....+.++++.++|.+..++++.+|||||||||+|||||+++|++|
T Consensus 106 ~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lL 185 (366)
T 3tui_C 106 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL 185 (366)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 599999998776778999987543221 111 1245788999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 490 LIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 490 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||||++||+.++..++++|+++.++.|.|||+||||++++..+||||++|+++.. ...++++++++.
T Consensus 186 LlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~i--v~~g~~~ev~~~ 254 (366)
T 3tui_C 186 LCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL--IEQDTVSEVFSH 254 (366)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE--EECCBHHHHHSS
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 999999999999999999999999777799999999999999999999999996543 467889888764
No 16
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.7e-42 Score=365.78 Aligned_cols=204 Identities=27% Similarity=0.329 Sum_probs=174.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-------C--cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-------P--EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-------~--~~~i~y 417 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ + ...++|
T Consensus 11 s~~y~~-~~~L~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 11 SKSFQN-TPVLNDISLSLDPG-----EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEEECC-EEEEEeeEEEEcCC-----CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 778875 34799999999988 68999999999999999999999999999985 2221 1 246999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEec
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDE 493 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDE 493 (605)
++|+......+||++++....... ... ...+.++++.++|.+++++++.+|||||||||+|||||+.+|++|||||
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999987666789999986533211 111 3467889999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 494 PSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 494 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 165 Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i--~~~g~~~el~~~ 229 (359)
T 3fvq_A 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRI--LQTASPHELYRQ 229 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEE--EEEeCHHHHHhC
Confidence 99999999999999999888777799999999999999999999999986543 456889988764
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3e-42 Score=366.33 Aligned_cols=204 Identities=27% Similarity=0.355 Sum_probs=174.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ....|+|++|+
T Consensus 10 ~~~yg~-~~~L~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 10 TKAWGE-VVVSKDINLDIHEG-----EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred EEEECC-EEEEeeeEEEECCC-----CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecC
Confidence 778875 34789999999988 68999999999999999999999999999985 2221 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||.+++....... .. ....+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 87767789999885432211 11 124578899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i--~~~g~~~~l~~~ 224 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV--AQVGKPLELYHY 224 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEEeCHHHHHhC
Confidence 9999999999999999776799999999999999999999999997543 456888888653
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1e-41 Score=347.08 Aligned_cols=203 Identities=24% Similarity=0.324 Sum_probs=170.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
++.|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|
T Consensus 31 ~~~y~~-~~vL~~vsl~i~~G-----ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~ 104 (263)
T 2olj_A 31 KKSFGS-LEVLKGINVHIREG-----EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGM 104 (263)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred EEEECC-EEEEEeeEEEEcCC-----CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEE
Confidence 778865 34789999999888 68999999999999999999999999999985 22221 124999
Q ss_pred ecCcCCCCCcCcHHHHHHhhh-cc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 418 KPQKISPKFQSTVRHLLHQKI-RD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~-~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
+||+.......||++++.... .. .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 105 v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD 184 (263)
T 2olj_A 105 VFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184 (263)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 999976655679999875421 11 1111 245678999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||++||+.++..++++|+++.++ |.|||+||||++++..+|||+++|+++.. ...++++++++.
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 249 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYI--IEEGKPEDLFDR 249 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999998655 99999999999999999999999986543 345788887653
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.3e-42 Score=347.52 Aligned_cols=203 Identities=22% Similarity=0.291 Sum_probs=169.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------------- 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------------- 411 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+.
T Consensus 13 ~~~y~~-~~vl~~vsl~i~~G-----e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 13 HKRYGG-HEVLKGVSLQARAG-----DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEECC-EEEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChh
Confidence 778865 34789999999888 68999999999999999999999999999985 22221
Q ss_pred -----cceeEeecCcCCCCCcCcHHHHHHhhh-cc-CCC---CHHHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHH
Q 040300 412 -----EFNVSYKPQKISPKFQSTVRHLLHQKI-RD-SYT---HPQFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 412 -----~~~i~y~~q~~~~~~~~tv~~~~~~~~-~~-~~~---~~~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~ 480 (605)
...++|+||+.......||.+++.... .. ... ....+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHH
Confidence 124999999976656679999875421 11 111 12456789999999998 99999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 481 CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 481 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.+|++|||||||+|||+.++..++++|+++.++ |.|||+||||++++..+|||+++|+++.. ...++++++++.
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 243 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKI--EEEGDPEQVFGN 243 (262)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 999999999999999999999999999999998654 99999999999999999999999986543 345788887653
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9.9e-42 Score=341.91 Aligned_cols=192 Identities=23% Similarity=0.311 Sum_probs=158.6
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------c
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------E 412 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~ 412 (605)
+++|+.. ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. .
T Consensus 8 ~~~y~~~~~~~~~L~~isl~i~~G-----e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 82 (235)
T 3tif_A 8 TKTYKMGEEIIYALKNVNLNIKEG-----EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82 (235)
T ss_dssp EEEEEETTEEEEEEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEeCCCCcceeeEEeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhh
Confidence 6677532 24689999999888 78999999999999999999999999999985 22221 1
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhcc----CCCC---HHHHHHHHhhcCCchh-hccCcCcCChhHHHHHHHHHHHcc
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRD----SYTH---PQFVSDVMKPLLIEQL-MDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~----~~~~---~~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
..++|++|++......||.+++...... .... ...+.++++.+++.+. .++++.+|||||||||+|||||++
T Consensus 83 ~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~ 162 (235)
T 3tif_A 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN 162 (235)
T ss_dssp HHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred ccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 2499999998766667999987542211 1111 2346788999999875 599999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPS 546 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~ 546 (605)
+|++|||||||++||+.++..++++|+++.++.|.|||+||||++.+ .+||||++|+++..
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i 223 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999998765699999999999965 78999999986543
No 21
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-41 Score=359.33 Aligned_cols=204 Identities=25% Similarity=0.328 Sum_probs=172.3
Q ss_pred eeec-CCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecC
Q 040300 349 RYKY-PTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y-~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q 420 (605)
+++| ++ ...+++++|++.+| |+++|+||||||||||||+|+|+++|++|++. +..+ ....++|++|
T Consensus 21 ~~~y~g~-~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 21 EKIYPGG-ARSVRGVSFQIREG-----EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp EECCTTS-TTCEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEEEcCC-CEEEeeeEEEECCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEec
Confidence 7778 54 24689999999988 68999999999999999999999999999985 2222 1346999999
Q ss_pred cCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+......+||++++...... ... ....+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 98766678999987543221 111 12457889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|+++++.
T Consensus 175 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i--~~~g~~~~l~~~ 236 (355)
T 1z47_A 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNV--EQFGTPEEVYEK 236 (355)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 99999999999999998766689999999999999999999999996543 355888888653
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.4e-41 Score=336.70 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=160.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----------ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----------EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----------~~~i 415 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...+
T Consensus 11 ~~~y~~-~~~l~~vsl~i~~G-----e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 11 KKVIRG-YEILKGISLSVKKG-----EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEEECC-EeeEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 778875 45789999999888 68999999999999999999999999999985 22221 1359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|+||+.......||.+++...... ... ....+.++++.+++.+..++++.+|||||||||+|||||+++|++|||
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999997665667999987542211 111 124567899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
||||++||+.++..+.++|+++.++ |.|||+||||++++ .+|||+++|+++.
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~ 216 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGK 216 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCE
Confidence 9999999999999999999998665 99999999999998 7899999998654
No 23
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-41 Score=357.82 Aligned_cols=204 Identities=30% Similarity=0.398 Sum_probs=173.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ....++|++|+
T Consensus 10 ~~~y~~-~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 10 KKYFGK-VKAVDGVSFEVKDG-----EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecC
Confidence 677865 34689999999888 68999999999999999999999999999985 2222 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CC---CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YT---HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||++++....... .. ....+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 77666789999986533211 11 124578899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i--~~~g~~~~l~~~ 224 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKL--VQYGTPDEVYDS 224 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999998766689999999999999999999999996543 356888888654
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.8e-41 Score=343.54 Aligned_cols=199 Identities=20% Similarity=0.323 Sum_probs=169.4
Q ss_pred eeecC-CceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc
Q 040300 349 RYKYP-TMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ 427 (605)
Q Consensus 349 ~~~y~-~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~ 427 (605)
+++|+ + ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. ....++|+||+....+.
T Consensus 11 ~~~y~~~-~~vl~~isl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----~~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 11 GFYYQAE-NFLFQQLNFDLNKG-----DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----VYQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEETTT-TEEEEEEEEEEETT-----CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE----ECSCEEEECSCCCCSSC
T ss_pred EEEeCCC-CeEEEEEEEEECCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----EeccEEEEcCCCccCCC
Confidence 77786 4 34789999999888 68999999999999999999999999999984 23469999999766667
Q ss_pred CcHHHHHHhhhcc--C---CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 428 STVRHLLHQKIRD--S---YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 428 ~tv~~~~~~~~~~--~---~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.||++++...... . ... ...+.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 81 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 160 (253)
T 2nq2_C 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160 (253)
T ss_dssp CBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred CCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 8999988643211 1 011 2456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.++..+.++|+++.++.|.|||+||||++++..+|||+++++++. . ..++++++.+.
T Consensus 161 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~--~~g~~~~~~~~ 218 (253)
T 2nq2_C 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F--KFGETRNILTS 218 (253)
T ss_dssp HHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E--EEEEHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E--ecCCHHHHhCc
Confidence 9999999999999866558999999999999999999999998654 2 45778887654
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-41 Score=339.94 Aligned_cols=202 Identities=23% Similarity=0.262 Sum_probs=168.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 13 ~~~y~~-~~vl~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 13 HVYYGA-IHAIKGIDLKVPRG-----QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEECC-eeEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 778876 45789999999888 68999999999999999999999999999985 22221 1249999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCC-CC--HHHHHHHHhhcC-CchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSY-TH--PQFVSDVMKPLL-IEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP 494 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~-~~--~~~~~~~l~~l~-l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP 494 (605)
||+.......||.+++........ .. ...+.++++.++ +.+..++++.+|||||||||+|||||+++|++||||||
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 999766556799998864321111 11 245677889994 99999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 495 SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 495 t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|++||+.++..++++|+++.+ .|+|||+||||++++..+|||+++|+++.. ...++++++..
T Consensus 167 ts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 228 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQI--VLEGKASELLD 228 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEE--EEEEEHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEEcCHHHHhc
Confidence 999999999999999999865 589999999999999999999999986543 34577777754
No 26
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.1e-41 Score=357.10 Aligned_cols=203 Identities=30% Similarity=0.424 Sum_probs=172.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-----cceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-----EFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-----~~~i~y~~q~ 421 (605)
+++|++. .+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|++|+
T Consensus 8 ~~~y~~~--~l~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 8 SRKWKNF--SLDNLSLKVESG-----EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEECSSC--EEEEEEEEECTT-----CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEECCE--EEeeeEEEEcCC-----CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 7788753 789999999888 68999999999999999999999999999985 22221 2359999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS 500 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~ 500 (605)
......+||++++...... .......+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 7766678999987543211 111226678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 161 ~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i--~~~g~~~~~~~~ 218 (348)
T 3d31_A 161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL--IQVGKPEEIFEK 218 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCE--EEEECHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999776799999999999999999999999986543 345788888654
No 27
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.9e-41 Score=357.58 Aligned_cols=204 Identities=27% Similarity=0.362 Sum_probs=172.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++. ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+ ....++|++|+
T Consensus 10 ~~~y~~~-~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 10 VKKFGNF-TALNNINLKIKDG-----EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEESSSS-EEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EEEECCE-EEEEeeEEEECCC-----CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecC
Confidence 7778653 4689999999888 68999999999999999999999999999985 2222 12469999999
Q ss_pred CCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||++++...... .... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 7766678999987543221 1111 24577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i--~~~g~~~~~~~~ 224 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEI--LQVGTPDEVYYK 224 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999998766689999999999999999999999996543 356888888654
No 28
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.6e-41 Score=359.07 Aligned_cols=205 Identities=27% Similarity=0.307 Sum_probs=172.3
Q ss_pred eeecCCcee-eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc--------cC--ccee
Q 040300 349 RYKYPTMVK-TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE--------IP--EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~-~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~--------~~--~~~i 415 (605)
+++|++... .+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.. .+ ...+
T Consensus 10 ~~~y~~~~~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 10 SKVFKKGKVVALDNVNINIENG-----ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEGGGTEEEEEEEEEEECTT-----CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred EEEECCEeeeeEeceEEEECCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCE
Confidence 677765321 689999999888 68999999999999999999999999999985 211 11 2469
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|++|+......+||++++....... ... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLL 164 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999987666789999986533211 111 24578899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 165 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i--~~~g~~~~l~~~ 231 (353)
T 1oxx_K 165 DEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL--VQVGKPEDLYDN 231 (353)
T ss_dssp ESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHHHHHhC
Confidence 9999999999999999999998766699999999999999999999999986543 355888888653
No 29
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.9e-41 Score=358.38 Aligned_cols=204 Identities=26% Similarity=0.372 Sum_probs=172.7
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc---------cC--ccee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE---------IP--EFNV 415 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~---------~~--~~~i 415 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||||+|+|+++|++|++. +.. .+ ...+
T Consensus 10 ~~~y~~-~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 10 WKVFGE-VTAVREMSLEVKDG-----EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEEECC-EEEEeeeEEEEcCC-----CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE
Confidence 677865 34789999999888 68999999999999999999999999999985 211 11 2469
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhcc-CCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRD-SYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
+|++|+......+||++++...... .... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997766678999987543221 1111 24577899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i--~~~g~~~~l~~~ 230 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL--QQVGSPDEVYDK 230 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEE--EEeCCHHHHHhC
Confidence 9999999999999999999998766699999999999999999999999996543 356888888754
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-41 Score=341.41 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=168.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC------cceeEeecC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP------EFNVSYKPQ 420 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~------~~~i~y~~q 420 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.... ...++|+||
T Consensus 22 ~~~y~~-~~vl~~vsl~i~~G-----ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 22 RKRIGK-KEILKGISFEIEEG-----EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEECC-EEEEEeeEEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcC
Confidence 777865 35789999999888 68999999999999999999999999999985 22221 135999999
Q ss_pred cCCCCCcCcHHHHHHhhhc-cCCCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 421 KISPKFQSTVRHLLHQKIR-DSYTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~-~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
+.......||++++..... ..... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9766566799998754211 11111 2356789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 497 YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+||+.++..++++|+++.+ .|.|||+||||++++..+|||+++|+++.. ...++++++..
T Consensus 176 ~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 235 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTI--VETGTVEELKE 235 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEE--EEEEEHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEE--EEecCHHHHHH
Confidence 9999999999999999864 489999999999999999999999986543 34577787754
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-41 Score=344.20 Aligned_cols=199 Identities=20% Similarity=0.244 Sum_probs=166.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC--------cceeEee
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP--------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~--------~~~i~y~ 418 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 14 ~~~y~~-~~vl~~vsl~i~~G-----e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 14 VKYFGE-FKALDGVSISVNKG-----DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEETT-EEEEEEECCEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEECC-EeeEeeeEEEEeCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 778875 34789999988888 78999999999999999999999999999985 22221 1259999
Q ss_pred cCcCCCCCcCcHHHHHHhhhcc---C-----------CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH
Q 040300 419 PQKISPKFQSTVRHLLHQKIRD---S-----------YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC 481 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~---~-----------~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a 481 (605)
||+.......||.+++...... . ... ...+.++++.+++.+..++++.+|||||||||+||||
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAra 167 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 167 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHH
Confidence 9987655568999988643211 1 111 2456789999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
|+++|++|||||||+|||+.++..++++|+++.++ |.|||+||||++++..+|||+++|+++.. ...+++++
T Consensus 168 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~ 239 (257)
T 1g6h_A 168 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQI--IAEGRGEE 239 (257)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEE--EEEEESHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEE--EEEeCHHH
Confidence 99999999999999999999999999999998654 99999999999999999999999986543 34567777
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-41 Score=338.75 Aligned_cols=201 Identities=26% Similarity=0.356 Sum_probs=166.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++ .+++++|++.+ + +++|+||||||||||+|+|+|+++|++|++. +..+ ....++|+||+
T Consensus 8 ~~~y~~---~l~~isl~i~~-e-----~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 8 EKRLGN---FRLNVDFEMGR-D-----YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEEETT---EEEEEEEEECS-S-----EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEeCC---EEeeeEEEECC-E-----EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 677764 37888888877 6 7999999999999999999999999999985 2222 12369999999
Q ss_pred CCCCCcCcHHHHHHhhhccCC--CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDSY--THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.......||++++........ .....+.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 79 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 766556799998854321100 013456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+.++..++++|+++.++.|+|||+||||++++..+|||+++|+++.. ...++++++++.
T Consensus 159 ~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i--~~~g~~~~~~~~ 217 (240)
T 2onk_A 159 LKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRI--VEKGKLKELFSA 217 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 99999999999998655589999999999999999999999986543 345788887653
No 33
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.5e-41 Score=357.37 Aligned_cols=204 Identities=27% Similarity=0.378 Sum_probs=168.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----CcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----PEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----~~~~i~y~~q~ 421 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||||+|+|+++|++|++. +..+ ....++|++|+
T Consensus 18 ~~~y~~-~~vl~~vsl~i~~G-----e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 18 TKRFGN-FTAVNKLNLTIKDG-----EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEECC-EEEEeeeEEEECCC-----CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecC
Confidence 777865 34789999999888 68999999999999999999999999999985 2222 13469999999
Q ss_pred CCCCCcCcHHHHHHhhhccC-CCC---HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 422 ISPKFQSTVRHLLHQKIRDS-YTH---PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
......+||++++....... ... ...+.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 77666789999986532211 111 24577899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+..+..+.+.|+++.++.|.|+|+||||++++..+||||++|+++.. ...++|++++..
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i--~~~g~~~~l~~~ 232 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL--LQIGSPTEVYLR 232 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE--EEEECHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHHhC
Confidence 9999999999999998766689999999999999999999999996543 356888888654
No 34
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=8.9e-44 Score=396.68 Aligned_cols=374 Identities=13% Similarity=0.093 Sum_probs=233.5
Q ss_pred eeecCC--CCCCCcEEEEECCCCChHHHHHHH--HhcCCCCCCceee--CCCChhhhhh--hhccchhhhhHHHHHHHHH
Q 040300 93 KLHRLP--VPRPGQVLGLVGTNGIGKSTALKI--LAGKLKPNLGRFN--NPPDWQEILT--YFRGSELQNYFTRILEDNL 164 (605)
Q Consensus 93 ~l~~l~--~~~~Ge~~gLvG~NGsGKSTLlki--L~G~l~p~~G~i~--~~~~~~~~~~--~~~g~~l~~~~~~~~~~~~ 164 (605)
.|++++ .+.+|++++|+|+||||||||+++ ++|+++|+.|.+. .......... .-.|..+|++.. .
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~-----~- 100 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVD-----E- 100 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHH-----T-
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhc-----c-
Confidence 344444 246999999999999999999999 7899998988874 1111110000 001111121100 0
Q ss_pred HHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 040300 165 KAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS 244 (605)
Q Consensus 165 ~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPt 244 (605)
..+.. ..+. .. ....++++.+++.+++++.+.+||||| |++++|||||
T Consensus 101 ------~~l~~------~~~~---~~----~~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t 148 (525)
T 1tf7_A 101 ------GKLFI------LDAS---PD----PEGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVT 148 (525)
T ss_dssp ------TSEEE------EECC---CC----SSCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECST
T ss_pred ------CcEEE------EecC---cc----cchhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHH
Confidence 00000 0000 00 011234566677777888888888885 7799999999
Q ss_pred CC-----CCHHHHHHHHHHHHHhhcCCcEEEEEecCHhH---------HHhhcCEEEEEeCccccccccccchhhHHHHH
Q 040300 245 SY-----LDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV---------LDYLSDFICCLYGKPGAYGVVTLPFSVREGIN 310 (605)
Q Consensus 245 s~-----LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~---------l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~ 310 (605)
+. ||+..+..+.++++.+++.|+|||+|||++++ +.++||+|++|+..... |.......+..
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~~-G~~~r~l~~~k--- 224 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEG-ERRRRTLEILK--- 224 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECST-TCCEEEEEEEE---
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEccC-CceeEEEEEEE---
Confidence 84 69999999999999998789999999999998 46779999999642210 11100000000
Q ss_pred hhhcCCCCCcc---ccccccccc-ccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCC
Q 040300 311 IFLAGFVPTEN---LRFRDESLT-FRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTG 386 (605)
Q Consensus 311 ~~l~g~~~~e~---~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsG 386 (605)
+. +...... +.+....+. +................ +..|+. ++ .+-.|.+.+|++++|+||||||
T Consensus 225 -~r-~~~~~~~~~~~~i~~~gi~v~p~~~~~~~~~~~~~~l-~~g~~~----ld----~vL~g~i~~G~i~~i~G~~GsG 293 (525)
T 1tf7_A 225 -LR-GTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRV-SSGVVR----LD----EMCGGGFFKDSIILATGATGTG 293 (525)
T ss_dssp -ET-TSCCCCSEEEEEEETTEEEECCTTTCCSCCCCCCCEE-CCSCHH----HH----HHTTSSEESSCEEEEEECTTSS
T ss_pred -CC-CCCCCCceEEEEEcCCCEEEEecccccccccccccee-ecChHH----HH----HHhCCCCCCCcEEEEEeCCCCC
Confidence 00 0000000 000000000 00000000000000000 111111 11 1234678888999999999999
Q ss_pred HHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcC
Q 040300 387 KTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVV 466 (605)
Q Consensus 387 KSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 466 (605)
||||++.++|...|+ |. ..+.|.+|+. ..++........+ + ..+ +..+++..+.+.++.
T Consensus 294 KSTLl~~l~g~~~~~-G~--------~vi~~~~ee~-------~~~l~~~~~~~g~-~---~~~-~~~~g~~~~~~~~p~ 352 (525)
T 1tf7_A 294 KTLLVSRFVENACAN-KE--------RAILFAYEES-------RAQLLRNAYSWGM-D---FEE-MERQNLLKIVCAYPE 352 (525)
T ss_dssp HHHHHHHHHHHHHTT-TC--------CEEEEESSSC-------HHHHHHHHHTTSC-C---HHH-HHHTTSEEECCCCGG
T ss_pred HHHHHHHHHHHHHhC-CC--------CEEEEEEeCC-------HHHHHHHHHHcCC-C---HHH-HHhCCCEEEEEeccc
Confidence 999999999998875 42 1144555542 2222211111111 1 122 334667777888999
Q ss_pred cCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH-----HHHHHHHHHHHHHhcCCcEEEEEecCH----------HHH
Q 040300 467 NLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE-----QRIVAAKVIKRFILHAKKTAFVVEHDF----------IMA 531 (605)
Q Consensus 467 ~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~-----~~~~l~~~l~~l~~~~g~tiivvsHD~----------~~~ 531 (605)
+|||||+||+++|+++..+|++|||| ||++||.. .+..+.++++.+. +.|.|+|+||||. ..+
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~~l 430 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDSHI 430 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSSCC
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-hCCCEEEEEECcccccCcccccCccc
Confidence 99999999999999999999999999 99999999 9999999999875 5699999999999 788
Q ss_pred HhhcCEEEEEe
Q 040300 532 TYLADRVIVYE 542 (605)
Q Consensus 532 ~~~adrviv~~ 542 (605)
.++||+|++|.
T Consensus 431 ~~~~D~vi~L~ 441 (525)
T 1tf7_A 431 STITDTIILLQ 441 (525)
T ss_dssp TTTCSEEEEEE
T ss_pred ceeeeEEEEEE
Confidence 89999999986
No 35
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-40 Score=340.00 Aligned_cols=204 Identities=24% Similarity=0.339 Sum_probs=169.3
Q ss_pred eeecC-Cc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC----cceeEee
Q 040300 349 RYKYP-TM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP----EFNVSYK 418 (605)
Q Consensus 349 ~~~y~-~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~----~~~i~y~ 418 (605)
+++|+ +. ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 9 ~~~y~~~~~~~~~vl~~vsl~i~~G-----e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v 83 (266)
T 2yz2_A 9 SHIFHRGTPLEKKALENVSLVINEG-----ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIA 83 (266)
T ss_dssp EEEESTTSTTCEEEEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEE
T ss_pred EEEecCCCccccceeeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEE
Confidence 67776 22 34789999999888 68999999999999999999999999999985 22221 2359999
Q ss_pred cCcC-CCCCcCcHHHHHHhhhcc---CCCCHHHHHHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe
Q 040300 419 PQKI-SPKFQSTVRHLLHQKIRD---SYTHPQFVSDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGKPADIYLID 492 (605)
Q Consensus 419 ~q~~-~~~~~~tv~~~~~~~~~~---~~~~~~~~~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD 492 (605)
||++ ...+..||++++...... .......+.++++.+++. +..++++.+|||||||||+|||||+++|++||||
T Consensus 84 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 163 (266)
T 2yz2_A 84 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD 163 (266)
T ss_dssp CSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred eccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 9985 334568999987542211 112245678899999999 9999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 493 EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 493 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||++||+.++..++++|+++.++ |.|||+||||++++..+|||+++|+++.. ...+++++++..
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 228 (266)
T 2yz2_A 164 EPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKK--VFDGTRMEFLEK 228 (266)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEE--EEEEEHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhcC
Confidence 999999999999999999998655 99999999999999999999999986543 345777777654
No 36
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.6e-41 Score=345.22 Aligned_cols=203 Identities=19% Similarity=0.192 Sum_probs=167.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC---------cceeEe
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP---------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~---------~~~i~y 417 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|
T Consensus 28 ~~~y~~-~~vL~~isl~i~~G-----e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~ 101 (279)
T 2ihy_A 28 GRMKQG-KTILKKISWQIAKG-----DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGF 101 (279)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEE
T ss_pred EEEECC-EEEEEeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEE
Confidence 788875 35789999999888 68999999999999999999999999999985 22221 135999
Q ss_pred ecCcCCCCC--cCcHHHHHHhhhcc------CCCC--HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC
Q 040300 418 KPQKISPKF--QSTVRHLLHQKIRD------SYTH--PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 418 ~~q~~~~~~--~~tv~~~~~~~~~~------~~~~--~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
+||+....+ ..||++++...... .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 181 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQ 181 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 999864333 35999988542110 0111 2356789999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA--FVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti--ivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||+|||+.++..++++|+++.++ |+|| |+||||++++..+|||+++|+++.. ...++++++.+.
T Consensus 182 lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~~ 253 (279)
T 2ihy_A 182 VLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQS--IQQGAVEDILTS 253 (279)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEE--EEEEEHHHHCSH
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHHHhcc
Confidence 99999999999999999999999998665 8999 9999999999999999999986543 345778887654
No 37
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.2e-40 Score=334.64 Aligned_cols=192 Identities=24% Similarity=0.381 Sum_probs=163.7
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeecCcCCCCCcC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKPQKISPKFQS 428 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~q~~~~~~~~ 428 (605)
.+++++|++.+| |+++|+||||||||||+|+|+|+++|+ |++. +.... ...++|+||+....+..
T Consensus 15 vl~~vsl~i~~G-----e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (249)
T 2qi9_C 15 RLGPLSGEVRAG-----EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT 88 (249)
T ss_dssp TEEEEEEEEETT-----CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTC
T ss_pred EEeeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCC
Confidence 588999999888 689999999999999999999999999 9985 22221 13599999997765667
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC-------EEEEecCCCCCCHH
Q 040300 429 TVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD-------IYLIDEPSAYLDSE 501 (605)
Q Consensus 429 tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~-------lllLDEPt~~LD~~ 501 (605)
||++++........ ....+.++++.+++.++.++++.+|||||||||+|||||+++|+ +|||||||+|||+.
T Consensus 89 tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~ 167 (249)
T 2qi9_C 89 PVWHYLTLHQHDKT-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167 (249)
T ss_dssp BHHHHHHTTCSSTT-CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred cHHHHHHHhhccCC-cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHH
Confidence 99998864311111 25567889999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
++..+.++|+++.++ |.|||+||||++++..+|||+++|+++.. ...++++++.+
T Consensus 168 ~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~~ 222 (249)
T 2qi9_C 168 QQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKM--LASGRREEVLT 222 (249)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEEEHHHHSC
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHHHhc
Confidence 999999999998655 89999999999999999999999986543 34577888765
No 38
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-40 Score=327.97 Aligned_cols=187 Identities=20% Similarity=0.321 Sum_probs=159.3
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc--CcceeEeecCcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI--PEFNVSYKPQKISP 424 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~--~~~~i~y~~q~~~~ 424 (605)
+++|++ ..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +... ....++|+||+...
T Consensus 17 s~~y~~--~il~~vsl~i~~G-----e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 17 SVGYDK--PVLERITMTIEKG-----NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEESSS--EEEEEEEEEEETT-----CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCC
T ss_pred EEEeCC--eEEeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcC
Confidence 788876 5799999999988 68999999999999999999999999999985 2221 13469999999766
Q ss_pred CCcCcHHHHHHhhhc--cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQKIR--DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~ 502 (605)
....||.+++..... ........+.++++.+++.+. ++++.+|||||||||+|||||+.+|++|||||||++||+.+
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~ 168 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168 (214)
T ss_dssp CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTT
T ss_pred CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 556799998754211 101224567889999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
+..++++|+++.++ |.|||+||||++++..+|||++++.+.
T Consensus 169 ~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~~~~ 209 (214)
T 1sgw_A 169 KHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKYSTK 209 (214)
T ss_dssp HHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGGBC-
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEeCCc
Confidence 99999999998654 899999999999999999999988764
No 39
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-39 Score=333.13 Aligned_cols=203 Identities=18% Similarity=0.292 Sum_probs=164.0
Q ss_pred eeecCC--ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPT--MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~--~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
++.|++ ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|
T Consensus 23 ~~~y~~~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~ 97 (271)
T 2ixe_A 23 SFAYPNHPNVQVLQGLTFTLYPG-----KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAA 97 (271)
T ss_dssp EECCTTCTTSCCEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEE
T ss_pred EEEeCCCCCceeeEeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEE
Confidence 778864 134689999999888 68999999999999999999999999999985 22221 125999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCC-HH--------HHHHHHhhc--CCchhhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTH-PQ--------FVSDVMKPL--LIEQLMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~-~~--------~~~~~l~~l--~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||+... +..||++++...... ... .. .+.++++.+ ++....++++.+|||||||||+|||||+++|
T Consensus 98 v~Q~~~l-~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p 175 (271)
T 2ixe_A 98 VGQEPLL-FGRSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175 (271)
T ss_dssp ECSSCCC-CSSBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred EecCCcc-ccccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 9998754 457999998643211 111 11 123456666 6777889999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||||||||++||+.++..++++|+++.++.|.|||+||||++++.. ||||++|+++.. ...++++++....
T Consensus 176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i--~~~g~~~~l~~~~ 247 (271)
T 2ixe_A 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSV--CEQGTHLQLMERG 247 (271)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEE--EEEECHHHHHHHT
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhCc
Confidence 99999999999999999999999999865558999999999999875 999999986543 3568888887653
No 40
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.1e-39 Score=325.21 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=161.8
Q ss_pred eeecC-CceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYP-TMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~-~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+ +....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+
T Consensus 14 ~~~y~~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v 88 (247)
T 2ff7_A 14 RFRYKPDSPVILDNINLSIKQG-----EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 88 (247)
T ss_dssp EEESSTTSCEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeCCCCcceeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEE
Confidence 78883 2345789999999988 68999999999999999999999999999985 22221 1259999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhcc-----------CcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ-----------EVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||+... +..||++++..... ......+.++++.+++.++.++ ++.+|||||||||+|||||+++|+
T Consensus 89 ~Q~~~l-~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 89 LQDNVL-LNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp CSSCCC-TTSBHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred eCCCcc-ccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 998754 45799999854311 1234456677888887766554 458999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+.++..++++|+++ . .|.|||+||||++++.. |||+++|+++.. ...+++++++..
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~-~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i--~~~g~~~~l~~~ 233 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKI-C-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI--VEQGKHKELLSE 233 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHH-H-TTSEEEEECSSGGGGTT-SSEEEEEETTEE--EEEECHHHHHTS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 99999999999999999999999998 4 48999999999999865 999999986543 345788887654
No 41
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.9e-40 Score=335.54 Aligned_cols=201 Identities=23% Similarity=0.311 Sum_probs=152.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.....|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|. +
T Consensus 7 ~l~i~~l--------s~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~-----------~ 67 (275)
T 3gfo_A 7 ILKVEEL--------NYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL-----------F 67 (275)
T ss_dssp EEEEEEE--------EEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred EEEEEEE--------EEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE-----------E
Confidence 6777775 456754333566665 4579999999999999999999999999999999985 3
Q ss_pred ccchhh--hhHHHHHHHHHHHhhcccccccchhhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCC
Q 040300 148 RGSELQ--NYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGD 216 (605)
Q Consensus 148 ~g~~l~--~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~ 216 (605)
.|.++. ....... ....++.+|..+. ..+..++.+. +.....++++.++++.+||.+++++++.+
T Consensus 68 ~G~~i~~~~~~~~~~--~~~ig~v~Q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 68 DNKPIDYSRKGIMKL--RESIGIVFQDPDN--QLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp TTEECCCSHHHHHHH--HHSEEEECSSGGG--TCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred CCEECCcccccHHHH--hCcEEEEEcCccc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 343331 1000000 1112333443210 0011122221 12334467889999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL-RPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~-~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||||+||+||+.+|++||||||||+||+.++..++++|+++. ++|+|||+||||++++..+||+|++|+.+
T Consensus 144 LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G 220 (275)
T 3gfo_A 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220 (275)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999997 45999999999999999999999999743
No 42
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-39 Score=328.86 Aligned_cols=197 Identities=24% Similarity=0.330 Sum_probs=164.2
Q ss_pred eeecCCc---eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----CcceeE-ee
Q 040300 349 RYKYPTM---VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----PEFNVS-YK 418 (605)
Q Consensus 349 ~~~y~~~---~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~~~~i~-y~ 418 (605)
+++|++. ...+++++|++. | |+++|+||||||||||+|+|+|++ |++|++. +... ....++ |+
T Consensus 8 ~~~y~~~~~~~~il~~vsl~i~-G-----e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v 80 (263)
T 2pjz_A 8 GITLSGKGYERFSLENINLEVN-G-----EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNL 80 (263)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC-S-----SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECC
T ss_pred EEEeCCCCccceeEEeeeEEEC-C-----EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEe
Confidence 6667541 346889999998 8 689999999999999999999999 9999985 2211 123699 99
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY 497 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~ 497 (605)
||+... ..|+.+++.............+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 81 ~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 81 PEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp GGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred CCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 999765 78999987542211122355678899999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcC-EEEEEeCCcceeeecCChhhhhcc
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD-RVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ad-rviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
||+.++..+.++|+++. . |||+||||++++..+|| |+++|+++.. ...+++++++..
T Consensus 159 LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i--~~~g~~~~l~~~ 216 (263)
T 2pjz_A 159 VDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRL--QGPISVSELLES 216 (263)
T ss_dssp CCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEE--EEEEEHHHHHTE
T ss_pred cCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEE--EEecCHHHHHhh
Confidence 99999999999999873 2 99999999999999999 9999986543 356888888754
No 43
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.8e-39 Score=325.50 Aligned_cols=197 Identities=26% Similarity=0.329 Sum_probs=145.4
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.. ...|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|. +.|.++..+...
T Consensus 7 l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~-----------~~g~~~~~~~~~ 75 (235)
T 3tif_A 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY-----------IDNIKTNDLDDD 75 (235)
T ss_dssp EEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------ETTEECTTCCHH
T ss_pred EEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE-----------ECCEEcccCCHH
Confidence 45567532 23466666 4689999999999999999999999999999999985 333332221111
Q ss_pred HHHH--HHHHhhcccccccchh-hhhchhhh--------hcCchHHHHHHHHHHhhcCCchh-hcccCCCCChHHHHHHH
Q 040300 159 ILED--NLKAIIKPQYVDHIPK-AVQGNVGQ--------VLDQKDERDMKADLCTDLDLNQV-IDRNVGDLSGGELQRFA 226 (605)
Q Consensus 159 ~~~~--~~~~~~~~q~~~~~~~-~~~~~v~~--------~l~~~~~~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QRva 226 (605)
.... ....++.+|.....+. .+..++.. ........+++.++++.++|.+. +++++.+|||||||||+
T Consensus 76 ~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 1000 1123344444333232 11112111 01123345678899999999875 59999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||||+++|++||||||||+||+..+..+.++|+++.++ |+|||+||||++++ .+||+|++|+.
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~ 220 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKD 220 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEET
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999765 99999999999965 78999999964
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.5e-39 Score=327.46 Aligned_cols=198 Identities=20% Similarity=0.189 Sum_probs=157.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~--~~~~~--------~~~i~ 416 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|+ ++|++|++. +..+. ...++
T Consensus 10 ~~~y~~-~~vl~~vsl~i~~G-----e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 83 (250)
T 2d2e_A 10 WASIDG-ETILKGVNLVVPKG-----EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF 83 (250)
T ss_dssp EEEETT-EEEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC
T ss_pred EEEECC-EEEEeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE
Confidence 778875 45789999999888 68999999999999999999998 789999985 22221 12388
Q ss_pred eecCcCCCCCcCcHHHHHHhhh---ccCCCC----HHHHHHHHhhcCC-chhhccCcCc-CChhHHHHHHHHHHHccCCC
Q 040300 417 YKPQKISPKFQSTVRHLLHQKI---RDSYTH----PQFVSDVMKPLLI-EQLMDQEVVN-LSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~---~~~~~~----~~~~~~~l~~l~l-~~~~~~~~~~-LSGGe~QRvaiA~aL~~~p~ 487 (605)
|++|++......||.+++.... ...... ...+.++++.+++ .+..++++.+ |||||||||+|||||+++|+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCS
T ss_pred EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCC
Confidence 9999876655679999874321 111111 2356789999999 5889999999 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChh
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQ 555 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~ 555 (605)
+|||||||++||+.++..++++|+++.+ .|+|||+||||++++..+ |||+++|+++.. ...++++
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i--~~~g~~~ 229 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRV--VATGGPE 229 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEE--EEEESHH
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEE--EEEeCHH
Confidence 9999999999999999999999999844 589999999999999888 599999986543 2446665
No 45
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1e-38 Score=331.13 Aligned_cols=203 Identities=23% Similarity=0.318 Sum_probs=165.1
Q ss_pred hhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------ccee
Q 040300 345 ETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNV 415 (605)
Q Consensus 345 ~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i 415 (605)
+++ +++|++...++++++|++.+| |+++|+||||||||||+++|+|+++|++|+|. +..+. ...|
T Consensus 57 ~~v-s~~y~~~~~vL~~isl~i~~G-----e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 57 ENV-HFSYADGRETLQDVSFTVMPG-----QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp EEE-EEESSTTCEEEEEEEEEECTT-----CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred EEE-EEEcCCCCceeeeeeEEEcCC-----CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 344 889975456799999999888 68999999999999999999999999999985 22222 1359
Q ss_pred EeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchh-----------hccCcCcCChhHHHHHHHHHHHcc
Q 040300 416 SYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQL-----------MDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 416 ~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+|+||++.. |..||++++..... ......+.++++..++.++ ..+...+|||||||||+|||||++
T Consensus 131 ~~v~Q~~~l-f~~Tv~eNi~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 131 GVVPQDTVL-FNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTST--TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcc-CcccHHHHHHhhcc--cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 999999754 57799999864321 1223445556666665544 345568999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 485 PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 485 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+|+||||||||++||+.++..+.+.|+++. .++|+|+||||+..+.. ||||++|+++.. ...|++++++...
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~~-aD~i~vl~~G~i--v~~G~~~el~~~~ 279 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVC--ANRTTIVVAHRLSTVVN-ADQILVIKDGCI--VERGRHEALLSRG 279 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTSEEEEECCSHHHHHT-CSEEEEEETTEE--EEEECHHHHHHHT
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEEcChHHHHc-CCEEEEEECCEE--EEECCHHHHHhcC
Confidence 999999999999999999999999999984 37899999999999987 999999997554 4668999988753
No 46
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.6e-39 Score=327.46 Aligned_cols=211 Identities=23% Similarity=0.302 Sum_probs=151.5
Q ss_pred cccccCCcc-eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCC
Q 040300 60 ICVKKCPFE-AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNP 137 (605)
Q Consensus 60 ~~~~~cp~~-ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~ 137 (605)
.-.+-|+.. +|++.||. ++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|.
T Consensus 14 ~~~~~~~m~~~l~i~~l~--------~~y~~~-~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~-- 82 (263)
T 2olj_A 14 LVPRGSHMLQMIDVHQLK--------KSFGSL-EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII-- 82 (263)
T ss_dssp --------CCSEEEEEEE--------EEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE--
T ss_pred cccCCCCchheEEEEeEE--------EEECCE-EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE--
Confidence 333444432 68888765 466543 2455555 3579999999999999999999999999999999985
Q ss_pred CChhhhhhhhccchhh--hhHHHHHHHHHHHhhcccccccchh-hhhchhhh----h--cCchHHHHHHHHHHhhcCCch
Q 040300 138 PDWQEILTYFRGSELQ--NYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----V--LDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 138 ~~~~~~~~~~~g~~l~--~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----~--l~~~~~~~~~~~~l~~l~L~~ 208 (605)
+.|.++. ....... .....+.+|.....+. .+..++.. . +......+++.++++.++|.+
T Consensus 83 ---------~~g~~i~~~~~~~~~~--~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 151 (263)
T 2olj_A 83 ---------IDGINLKAKDTNLNKV--REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD 151 (263)
T ss_dssp ---------ETTEESSSTTCCHHHH--HHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG
T ss_pred ---------ECCEECCCccccHHHH--hCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence 2232221 0000000 0112334443322222 11111111 0 112233567889999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||+|++
T Consensus 152 ~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 231 (263)
T 2olj_A 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLF 231 (263)
T ss_dssp GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987799999999999999999999999
Q ss_pred EeCc
Q 040300 289 LYGK 292 (605)
Q Consensus 289 l~g~ 292 (605)
|+.+
T Consensus 232 l~~G 235 (263)
T 2olj_A 232 MDGG 235 (263)
T ss_dssp EETT
T ss_pred EECC
Confidence 9743
No 47
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.6e-39 Score=321.00 Aligned_cols=202 Identities=23% Similarity=0.287 Sum_probs=149.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|++. +
T Consensus 4 ~l~~~~l--------~~~y~~~-~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~ 63 (224)
T 2pcj_A 4 ILRAENI--------KKVIRGY-EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF-----------L 63 (224)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred EEEEEeE--------EEEECCE-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-----------E
Confidence 5777765 4566542 3455555 3579999999999999999999999999999999985 2
Q ss_pred ccchhhhhHHHHHH--HHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 148 RGSELQNYFTRILE--DNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 148 ~g~~l~~~~~~~~~--~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.|.++..+...... ......+.+|.....+. .+..++.. . +.....++++.++++.+||.+.+++++.+|||
T Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 143 (224)
T 2pcj_A 64 EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSG 143 (224)
T ss_dssp TTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCH
T ss_pred CCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 23322111000000 00122334444322221 11111110 0 11123456788999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||||||+||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++ .+||++++|+.
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~ 214 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKD 214 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEET
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999987799999999999998 79999999964
No 48
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7e-39 Score=322.83 Aligned_cols=200 Identities=20% Similarity=0.325 Sum_probs=162.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +..+. ...++|+|
T Consensus 8 ~~~y~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 82 (243)
T 1mv5_A 8 DFAYDDSEQILRDISFEAQPN-----SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS 82 (243)
T ss_dssp EECSSSSSCSEEEEEEEECTT-----EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred EEEeCCCCceEEEeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence 677843234689999999988 68999999999999999999999999999985 22211 23599999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCCE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|+... +..||++++...... ......+.++++.+++.++.+ +++.+|||||||||+|||||+++|++
T Consensus 83 q~~~l-~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 83 QDSAI-MAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp CSSCC-CCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCCcc-ccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 98754 456999987543111 123445677888888876654 45679999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||++||+.++..+++.|+++. .|+|||+||||++++. .|||+++|+++.. ...++++++...
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~ 227 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTIV-DADKIYFIEKGQI--TGSGKHNELVAT 227 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHHHH-HCSEEEEEETTEE--CCCSCHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChHHHH-hCCEEEEEECCEE--EEeCCHHHHHhc
Confidence 99999999999999999999999985 4899999999999886 5999999986543 356888888654
No 49
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.1e-39 Score=326.25 Aligned_cols=203 Identities=24% Similarity=0.359 Sum_probs=151.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.||. ++||.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|. +
T Consensus 6 ~l~i~~l~--------~~y~~~-~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~-----------~ 65 (262)
T 1b0u_A 6 KLHVIDLH--------KRYGGH-EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII-----------V 65 (262)
T ss_dssp CEEEEEEE--------EEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred eEEEeeEE--------EEECCE-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-----------E
Confidence 57777754 567643 3455555 3579999999999999999999999999999999985 2
Q ss_pred ccchhhh----------hHH-HHHHHHHHHhhcccccccchh-hhhchhhh----h--cCchHHHHHHHHHHhhcCCchh
Q 040300 148 RGSELQN----------YFT-RILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----V--LDQKDERDMKADLCTDLDLNQV 209 (605)
Q Consensus 148 ~g~~l~~----------~~~-~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----~--l~~~~~~~~~~~~l~~l~L~~~ 209 (605)
.|.++.. +.. ....-.....+.+|.....+. .+..++.. . +.....++++.++++.+||.+.
T Consensus 66 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 145 (262)
T 1b0u_A 66 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 145 (262)
T ss_dssp TTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCch
Confidence 2322210 000 000001122334444322222 11111111 0 1122335678899999999998
Q ss_pred -hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 210 -IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 210 -~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
+++++.+|||||||||+||+||+.+|++||||||||+||+..+..+.++|+++.++|+|||+||||++++..+||+|++
T Consensus 146 ~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 225 (262)
T 1b0u_A 146 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 225 (262)
T ss_dssp HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999987799999999999999999999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|+.
T Consensus 226 l~~ 228 (262)
T 1b0u_A 226 LHQ 228 (262)
T ss_dssp EET
T ss_pred EEC
Confidence 974
No 50
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.8e-39 Score=326.93 Aligned_cols=202 Identities=26% Similarity=0.391 Sum_probs=153.2
Q ss_pred CcceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 66 PFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 66 p~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
|..+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|.
T Consensus 8 ~~~~l~~~~l--------~~~~~~~-~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~--------- 69 (266)
T 4g1u_C 8 PVALLEASHL--------HYHVQQQ-ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH--------- 69 (266)
T ss_dssp CCCEEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE---------
T ss_pred CcceEEEEeE--------EEEeCCe-eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---------
Confidence 3346777775 4567653 3455555 3579999999999999999999999999999999985
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc-------CchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------DQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
+.|.++.......... ...+.+|.....+. .++.+.+ .....++++.++++.++|.+++++++.+|
T Consensus 70 --~~g~~~~~~~~~~~~~--~i~~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 142 (266)
T 4g1u_C 70 --LLGQNLNSWQPKALAR--TRAVMRQYSELAFP---FSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVL 142 (266)
T ss_dssp --ETTEETTTSCHHHHHH--HEEEECSCCCCCSC---CBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGC
T ss_pred --ECCEECCcCCHHHHhh--eEEEEecCCccCCC---CCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 3343332221111111 12233343222111 1222211 22345677899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 218 SGGELQRFAIAVVAVQ------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~------~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
||||||||+|||||++ +|++||||||||+||+..+..+.++|+++.++ ++|||+||||++++..+||+|++|+
T Consensus 143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~ 222 (266)
T 4g1u_C 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA 222 (266)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 9999999999999999 99999999999999999999999999999765 5799999999999999999999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 223 ~G 224 (266)
T 4g1u_C 223 QG 224 (266)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 51
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=8.6e-39 Score=337.78 Aligned_cols=205 Identities=22% Similarity=0.336 Sum_probs=154.6
Q ss_pred eEEEecCCcccCCCceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
+|++.||.+ +|+.. ...|++++ .+.+||++||+||||||||||+|+|+|+++|+.|+|.
T Consensus 24 mi~v~~ls~--------~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~--------- 86 (366)
T 3tui_C 24 MIKLSNITK--------VFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL--------- 86 (366)
T ss_dssp CEEEEEEEE--------EEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---------
T ss_pred eEEEEeEEE--------EeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEE---------
Confidence 688887654 56431 12456665 4589999999999999999999999999999999985
Q ss_pred hhhccchhhhhHHHHHH-HHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCC
Q 040300 145 TYFRGSELQNYFTRILE-DNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDL 217 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~-~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~L 217 (605)
+.|.++......... -.....+.+|.....+. .+..++... ......++++.++++.+||.+.+++++.+|
T Consensus 87 --i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 87 --VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp --ETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred --ECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 333333221111000 01123344444333332 122222110 123345678999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||||+|||||+.+|++||||||||+||+..+..++++|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G 240 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 240 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999764 999999999999999999999999743
No 52
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.8e-39 Score=326.42 Aligned_cols=201 Identities=18% Similarity=0.210 Sum_probs=161.9
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeee--ccccC--------cceeE
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDS--DVEIP--------EFNVS 416 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~--~~~~~--------~~~i~ 416 (605)
+++|++ ...+++++|++.+| |+++|+||||||||||+|+|+|++ +|++|++. +..+. ...++
T Consensus 27 ~~~y~~-~~vl~~vsl~i~~G-----e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 100 (267)
T 2zu0_C 27 HVSVED-KAILRGLSLDVHPG-----EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIF 100 (267)
T ss_dssp EEEETT-EEEEEEEEEEECTT-----CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred EEEECC-EEEEEeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEE
Confidence 778865 45789999999888 689999999999999999999994 68999985 22221 12489
Q ss_pred eecCcCCCCCcCcHHHHHHhhh---c---cC--CCC---HHHHHHHHhhcCCc-hhhccCcC-cCChhHHHHHHHHHHHc
Q 040300 417 YKPQKISPKFQSTVRHLLHQKI---R---DS--YTH---PQFVSDVMKPLLIE-QLMDQEVV-NLSGGELQRVALCLCLG 483 (605)
Q Consensus 417 y~~q~~~~~~~~tv~~~~~~~~---~---~~--~~~---~~~~~~~l~~l~l~-~~~~~~~~-~LSGGe~QRvaiA~aL~ 483 (605)
|++|+.......|+.+++.... . .. ... ...+.++++.+++. ...++++. +|||||||||+|||||+
T Consensus 101 ~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 101 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 9999976656678988764311 0 10 111 23567899999996 57889987 59999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cCEEEEEeCCcceeeecCChhhhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL-ADRVIVYEGQPSVDCVANAPQSLL 558 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~-adrviv~~g~~~~~~~~~~p~~~~ 558 (605)
.+|+||||||||++||+.++..++++|+++. +.|.|||+||||++++..+ |||+++|+++.. ...++++++.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i--~~~g~~~~~~ 253 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLR-DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI--VKSGDFTLVK 253 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-CSSCEEEEECSSGGGGGTSCCSEEEEEETTEE--EEEECTTHHH
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE--EEEcCHHHHh
Confidence 9999999999999999999999999999984 4589999999999999886 999999986543 3456777654
No 53
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-38 Score=322.52 Aligned_cols=203 Identities=21% Similarity=0.317 Sum_probs=151.2
Q ss_pred cceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 67 FEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 67 ~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
..+|++.||.+ +|+.. ..|.+++ .+.+||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 13 ~~~l~i~~l~~--------~y~~~-~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~---------- 73 (256)
T 1vpl_A 13 MGAVVVKDLRK--------RIGKK-EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT---------- 73 (256)
T ss_dssp -CCEEEEEEEE--------EETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE----------
T ss_pred CCeEEEEEEEE--------EECCE-EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----------
Confidence 45888888654 66542 3455555 3579999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh---h--cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V--LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~--l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
+.|.++...... . .-..++.+|.....+. .+..++.. . ......++++.++++.+||.+.+++++.+|||
T Consensus 74 -~~g~~~~~~~~~-~--~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSg 149 (256)
T 1vpl_A 74 -VFGKNVVEEPHE-V--RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 149 (256)
T ss_dssp -ETTEETTTCHHH-H--HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCH
T ss_pred -ECCEECCccHHH-H--hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCH
Confidence 223222110000 0 0112233443222221 11111110 0 11122346788999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||+||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||++++|+.+
T Consensus 150 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNG 222 (256)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999877999999999999999999999999753
No 54
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.1e-38 Score=323.87 Aligned_cols=203 Identities=21% Similarity=0.297 Sum_probs=150.7
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|++..
T Consensus 7 ~l~i~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~----------- 66 (257)
T 1g6h_A 7 ILRTENI--------VKYFGEF-KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF----------- 66 (257)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-----------
T ss_pred EEEEeee--------EEEECCE-eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------
Confidence 5777765 4577643 3566666 36799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh---h---------------cCchHHHHHHHHHHhhcCCch
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ---V---------------LDQKDERDMKADLCTDLDLNQ 208 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~---~---------------l~~~~~~~~~~~~l~~l~L~~ 208 (605)
.|.++........ ......+.+|.....+. .+..++.. . ......++++.++++.+||++
T Consensus 67 ~g~~~~~~~~~~~-~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 145 (257)
T 1g6h_A 67 ENKDITNKEPAEL-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145 (257)
T ss_dssp TTEECTTCCHHHH-HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG
T ss_pred CCEECCCCCHHHH-HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch
Confidence 2222211000000 00112233333222221 11111110 0 112234567889999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
.+++++.+|||||||||+||+||+.+|++||||||||+||+..+..+.++|+++.++|+|||+||||++++..+||+|++
T Consensus 146 ~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 225 (257)
T 1g6h_A 146 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYV 225 (257)
T ss_dssp GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEE
T ss_pred hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987799999999999999999999999
Q ss_pred EeCc
Q 040300 289 LYGK 292 (605)
Q Consensus 289 l~g~ 292 (605)
|+.+
T Consensus 226 l~~G 229 (257)
T 1g6h_A 226 MFNG 229 (257)
T ss_dssp EETT
T ss_pred EECC
Confidence 9753
No 55
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.4e-39 Score=340.60 Aligned_cols=204 Identities=25% Similarity=0.295 Sum_probs=149.8
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||.. ..|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 4 ~l~i~~l--------s~~y~~~-~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i----------- 63 (359)
T 3fvq_A 4 ALHIGHL--------SKSFQNT-PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL----------- 63 (359)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEeE--------EEEECCE-EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE-----------
Confidence 5777765 5577653 3466666 46899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...............+.+|.....|. .+..++... ......+++++++++.++|++++++++.+|||||
T Consensus 64 ~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq 143 (359)
T 3fvq_A 64 SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQ 143 (359)
T ss_dssp TTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHH
T ss_pred CCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 1211100000000000011222332222222 111122111 1234456789999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.+ .|.|||+||||++++..+||+|++|+.+
T Consensus 144 ~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G 215 (359)
T 3fvq_A 144 QQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQG 215 (359)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECC
Confidence 9999999999999999999999999999999999998888754 5999999999999999999999999643
No 56
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.4e-39 Score=339.88 Aligned_cols=200 Identities=25% Similarity=0.295 Sum_probs=151.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||.. ..|++++ .+++||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 3 ~l~~~~l--------~~~yg~~-~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i----------- 62 (381)
T 3rlf_A 3 SVQLQNV--------TKAWGEV-VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI----------- 62 (381)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEeE--------EEEECCE-EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE-----------
Confidence 4666664 5577653 3466666 45899999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhhh-----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVGQ-----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~~-----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... .....+.+|.....|.. +..++.. .+.+...++++.++++.++|.+++++++.+|||||
T Consensus 63 ~G~~~~~~~~~----~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGq 138 (381)
T 3rlf_A 63 GEKRMNDTPPA----ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQ 138 (381)
T ss_dssp TTEECTTCCGG----GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHH
T ss_pred CCEECCCCCHH----HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHH
Confidence 22221110000 00112223332222221 1111111 01233456789999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 139 rQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G 210 (381)
T 3rlf_A 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210 (381)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999765 999999999999999999999999743
No 57
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-38 Score=319.60 Aligned_cols=203 Identities=22% Similarity=0.326 Sum_probs=149.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|++. +
T Consensus 6 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~ 65 (240)
T 1ji0_A 6 VLEVQSL--------HVYYGAI-HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII-----------F 65 (240)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------E
T ss_pred eEEEEeE--------EEEECCe-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-----------E
Confidence 5777765 4566542 3455555 3579999999999999999999999999999999985 2
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh----cCchHHHHHHHHHHhhcC-CchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV----LDQKDERDMKADLCTDLD-LNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~----l~~~~~~~~~~~~l~~l~-L~~~~dr~v~~LSGGe 221 (605)
.|.++......... .....+.+|.....+. .+..++... .......++++++++.++ |.+.+++++.+|||||
T Consensus 66 ~g~~~~~~~~~~~~-~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq 144 (240)
T 1ji0_A 66 NGQDITNKPAHVIN-RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE 144 (240)
T ss_dssp TTEECTTCCHHHHH-HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHH
T ss_pred CCEECCCCCHHHHH-hCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHH
Confidence 23222111000000 0112233443222221 111111100 112233566788999995 9999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||++++|..+
T Consensus 145 ~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 215 (240)
T 1ji0_A 145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETG 215 (240)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999777999999999999999999999999753
No 58
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9.5e-38 Score=311.79 Aligned_cols=194 Identities=22% Similarity=0.326 Sum_probs=153.1
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ 427 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~ 427 (605)
+++|++ ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.. .++|+||++.. +.
T Consensus 13 ~~~y~~~~~~il~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g-~i~~v~q~~~~-~~ 82 (229)
T 2pze_A 13 TAFWEEGGTPVLKDINFKIERG-----QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSG-RISFCSQFSWI-MP 82 (229)
T ss_dssp EECSSTTSCCSEEEEEEEEETT-----CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ECS-CEEEECSSCCC-CS
T ss_pred EEEeCCCCceeeeeeEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCcCCccEEE---ECC-EEEEEecCCcc-cC
Confidence 777852 234689999999888 68999999999999999999999999999984 211 59999998765 44
Q ss_pred CcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-----------ccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 428 STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-----------DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 428 ~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.||++++..... . ......++++.+++.+.+ ++++.+|||||||||+|||||+++|++|||||||+
T Consensus 83 ~tv~enl~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts 159 (229)
T 2pze_A 83 GTIKENIIFGVS--Y-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 159 (229)
T ss_dssp BCHHHHHHTTSC--C-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred CCHHHHhhccCC--c-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 699999864311 1 122234455555655433 23468999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 497 YLDSEQRIVAAKV-IKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 497 ~LD~~~~~~l~~~-l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||+.++..+++. ++++. .++|||+||||++++. .|||+++|+++.. ...++++++...
T Consensus 160 ~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~ 219 (229)
T 2pze_A 160 YLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSS--YFYGTFSELQNL 219 (229)
T ss_dssp TSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HCSEEEEEETTEE--EEEECHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHHH-hCCEEEEEECCEE--EEECCHHHHHhc
Confidence 9999999999986 45552 3789999999999986 4999999986543 355788887654
No 59
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.7e-37 Score=315.78 Aligned_cols=198 Identities=20% Similarity=0.326 Sum_probs=159.4
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+|+|+|+++| +|++. +..+. ...++|
T Consensus 24 ~~~y~~~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~ 97 (260)
T 2ghi_A 24 NFSYPKQTNHRTLKSINFFIPSG-----TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGI 97 (260)
T ss_dssp EECCTTCCSSCSEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred EEEeCCCCcCceeEeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEE
Confidence 7778642 24689999999888 68999999999999999999999987 89885 22221 135999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhh-----------ccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLM-----------DQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++.. +..||++++..... ......+.++++.+++.+.. ++++.+|||||||||+|||||+++|
T Consensus 98 v~Q~~~l-~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 98 VPQDTIL-FNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp ECSSCCC-CSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EcCCCcc-cccCHHHHHhccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 9999754 45799998864311 12334556777777776542 4678899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+||||||||++||+.++..++++|+++. + ++|||+||||++++. .|||+++|+++.. ...+++++++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~l~~~ 243 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKI--VEKGTHKDLLKL 243 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEE--EEEECHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhc
Confidence 9999999999999999999999999984 3 899999999999986 4999999986543 356788887654
No 60
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.2e-38 Score=320.05 Aligned_cols=197 Identities=27% Similarity=0.367 Sum_probs=147.6
Q ss_pred eEEEecCCcccCCCceEEeC-CC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYG-PN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI 143 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg-~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~ 143 (605)
+|++.|| +++|+ .. ...|++++ .+.+||++||+|+||||||||+|+|+|+++|+.|++.
T Consensus 2 ~l~~~~l--------~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~-------- 65 (266)
T 2yz2_A 2 RIEVVNV--------SHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL-------- 65 (266)
T ss_dssp CEEEEEE--------EEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE--------
T ss_pred EEEEEEE--------EEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE--------
Confidence 4666664 55665 12 23455555 3579999999999999999999999999999999985
Q ss_pred hhhhccchhhhhHHHHHHHHHHHhhccccc-ccchhhhhchhhhh--------cCchHHHHHHHHHHhhcCCc--hhhcc
Q 040300 144 LTYFRGSELQNYFTRILEDNLKAIIKPQYV-DHIPKAVQGNVGQV--------LDQKDERDMKADLCTDLDLN--QVIDR 212 (605)
Q Consensus 144 ~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~v~~~--------l~~~~~~~~~~~~l~~l~L~--~~~dr 212 (605)
+.|.++... . . .-...+.+|.. ...+ ..++.+. +.....++++.++++.+||. +.+++
T Consensus 66 ---~~g~~~~~~--~-~--~~~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 134 (266)
T 2yz2_A 66 ---YDGERKKGY--E-I--RRNIGIAFQYPEDQFF---AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134 (266)
T ss_dssp ---ETTEECCHH--H-H--GGGEEEECSSGGGGCC---CSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC
T ss_pred ---ECCEECchH--H-h--hhhEEEEeccchhhcC---CCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC
Confidence 223222110 0 0 00112223321 0111 1122211 11122346788999999999 99999
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
++.+|||||||||+||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||++++|+.+
T Consensus 135 ~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999766999999999999999999999999743
No 61
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-38 Score=316.24 Aligned_cols=192 Identities=25% Similarity=0.352 Sum_probs=141.8
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+. .|.+++ .+.+ |++||+||||||||||+|+|+|+++|+.|++.. .|.++..... .
T Consensus 6 ~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~--~ 68 (240)
T 2onk_A 6 RAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL-----------NGADITPLPP--E 68 (240)
T ss_dssp EEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------TTEECTTSCT--T
T ss_pred EEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-----------CCEECCcCch--h
Confidence 35567764 255555 3478 999999999999999999999999999999852 2221110000 0
Q ss_pred HHHHHHhhcccccccchh-hhhchhhhhc---CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC
Q 040300 161 EDNLKAIIKPQYVDHIPK-AVQGNVGQVL---DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE 236 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~-~~~~~v~~~l---~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~ 236 (605)
....++.+|.....+. .+..++.... .....+++++++++.+||.+.+++++.+|||||||||+||+||+++|+
T Consensus 69 --~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 69 --RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp --TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred --hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 0011222332221111 1111111101 011235678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 237 IYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 237 vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||||++||+..+..+.++|+++.++ |+|||+||||++++..+||++++|+.+
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G 203 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999764 899999999999999999999999743
No 62
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=313.42 Aligned_cols=195 Identities=23% Similarity=0.335 Sum_probs=154.2
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCc
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQ 427 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~ 427 (605)
+++|++ ....+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +.. .++|+||++. .+.
T Consensus 10 ~~~y~~~~~~vl~~vsl~i~~G-----e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g-~i~~v~Q~~~-~~~ 79 (237)
T 2cbz_A 10 TFTWARSDPPTLNGITFSIPEG-----ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA---IKG-SVAYVPQQAW-IQN 79 (237)
T ss_dssp EEESCTTSCCSEEEEEEEECTT-----CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE---ECS-CEEEECSSCC-CCS
T ss_pred EEEeCCCCCceeeeeEEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECC-EEEEEcCCCc-CCC
Confidence 777863 234689999999888 68999999999999999999999999999984 211 5999999965 457
Q ss_pred CcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-----------hhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040300 428 STVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 428 ~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~ 496 (605)
.||++++..... ... ....++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~tv~enl~~~~~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 80 DSLRENILFGCQ--LEE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp EEHHHHHHTTSC--CCT-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred cCHHHHhhCccc--cCH-HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 899998864321 111 12233444333321 2568899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH---HHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 497 YLDSEQRIVAAKVIK---RFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~---~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
+||+.++..+++.|. ++ . .|+|||+||||++++. .|||+++|+++.. ...++++++.+..
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~-~~d~v~~l~~G~i--~~~g~~~~~~~~~ 219 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLP-QVDVIIVMSGGKI--SEMGSYQELLARD 219 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGG-GSSEEEEEETTEE--EEEECHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHH-hCCEEEEEeCCEE--EEeCCHHHHhhcc
Confidence 999999999999985 33 2 4899999999999885 6999999986543 3568888886653
No 63
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-38 Score=331.25 Aligned_cols=200 Identities=24% Similarity=0.365 Sum_probs=149.0
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||.. ..|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 3 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i----------- 62 (359)
T 2yyz_A 3 SIRVVNL--------KKYFGKV-KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF----------- 62 (359)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEEE--------EEEECCE-EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE-----------
Confidence 4666665 5567643 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhhcC-----chHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQVLD-----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~l~-----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... .....+.+|.....|. .+..++...+. ....++++.++++.++|++++++++.+|||||
T Consensus 63 ~g~~i~~~~~~----~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq 138 (359)
T 2yyz_A 63 DDVLVNDIPPK----YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQ 138 (359)
T ss_dssp TTEECTTSCGG----GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred CCEECCCCChh----hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 22221110000 0012223333222222 11112211111 11224678899999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 139 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G 210 (359)
T 2yyz_A 139 QQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQG 210 (359)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999765 999999999999999999999999743
No 64
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6e-38 Score=331.20 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=148.0
Q ss_pred ceEEEecCCcccCCCceEEe-CCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRY-GPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~y-g~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
.+|++.||.+ +| |.. ..|.+++ .+.+||+++|+||||||||||||+|+|+++|+.|+|..
T Consensus 13 ~~l~~~~l~~--------~y~g~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i--------- 74 (355)
T 1z47_A 13 MTIEFVGVEK--------IYPGGA-RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI--------- 74 (355)
T ss_dssp EEEEEEEEEE--------CCTTST-TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE---------
T ss_pred ceEEEEEEEE--------EEcCCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---------
Confidence 3688887655 45 432 1244444 24799999999999999999999999999999999852
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCCh
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSG 219 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSG 219 (605)
.|.++..... ......+.+|.....|. .+..++... +.....+++++++++.++|++++++++.+|||
T Consensus 75 --~g~~i~~~~~----~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSG 148 (355)
T 1z47_A 75 --GGKRVTDLPP----QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSG 148 (355)
T ss_dssp --TTEECTTCCG----GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCH
T ss_pred --CCEECCcCCh----hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCH
Confidence 1211110000 00001122222222221 111111100 12233457889999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|||+||||++++..+||+|++|+.+
T Consensus 149 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 222 (355)
T 1z47_A 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999765 999999999999999999999999743
No 65
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.4e-38 Score=330.08 Aligned_cols=192 Identities=27% Similarity=0.388 Sum_probs=145.8
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.. .|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|. +.|.++..... .
T Consensus 7 l~~~y~~~--~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-----------~~g~~i~~~~~--~- 70 (348)
T 3d31_A 7 LSRKWKNF--SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-----------LDGKDVTDLSP--E- 70 (348)
T ss_dssp EEEECSSC--EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE-----------ETTEECTTSCH--H-
T ss_pred EEEEECCE--EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE-----------ECCEECCCCch--h-
Confidence 45677653 456555 3589999999999999999999999999999999985 22322211100 0
Q ss_pred HHHHHhhcccccccchh-hhhchhhhhc---CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCE
Q 040300 162 DNLKAIIKPQYVDHIPK-AVQGNVGQVL---DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEI 237 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~-~~~~~v~~~l---~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~v 237 (605)
.....+.+|.....|. .+..++...+ ..... +++.++++.++|++++++++.+|||||||||+|||||+.+|++
T Consensus 71 -~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l 148 (348)
T 3d31_A 71 -KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI 148 (348)
T ss_dssp -HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred -hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 1112333443332232 1111211101 00112 6788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 238 YMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 238 lllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||||||+||+..+..+.+.|+++.+ .|+|+|+||||++++..+||+|++|.++
T Consensus 149 LLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G 204 (348)
T 3d31_A 149 LLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204 (348)
T ss_dssp EEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSS
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999976 4999999999999999999999999643
No 66
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-37 Score=314.75 Aligned_cols=198 Identities=22% Similarity=0.288 Sum_probs=145.3
Q ss_pred eEEEecCCcccCCCceEEeC-CCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYG-PNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg-~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.|| +++|+ .. ..|++++ .+.+||++||+||||||||||+|+|+|+++|+.|++.. ...+.+
T Consensus 4 ~l~i~~l--------~~~y~~~~-~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENL--------GFYYQAEN-FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----YQSIGF 70 (253)
T ss_dssp EEEEEEE--------EEEETTTT-EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE----CSCEEE
T ss_pred eEEEeeE--------EEEeCCCC-eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE----eccEEE
Confidence 5677665 55676 32 3455555 35799999999999999999999999999999999851 110111
Q ss_pred hcc-chhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH
Q 040300 147 FRG-SELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF 225 (605)
Q Consensus 147 ~~g-~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv 225 (605)
... ..+.. ...+.+++.....+. .+ ... .......++++++++.+||.+.+++++.+|||||||||
T Consensus 71 v~q~~~~~~--~~tv~enl~~~~~~~---------~~-~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 71 VPQFFSSPF--AYSVLDIVLMGRSTH---------IN-TFA-KPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp ECSCCCCSS--CCBHHHHHHGGGGGG---------SC-TTC-CCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred EcCCCccCC--CCCHHHHHHHhhhhh---------cc-ccc-CCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHH
Confidence 100 00000 000111211100000 00 000 01123356788999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+||+||+.+|++|||||||++||+..+..+.++|+++.++ |+|||+||||++++..+||++++|+.+
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 205 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ 205 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999876 999999999999999999999999753
No 67
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8e-38 Score=331.28 Aligned_cols=200 Identities=25% Similarity=0.358 Sum_probs=149.2
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++||.. ..|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 3 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i----------- 62 (362)
T 2it1_A 3 EIKLENI--------VKKFGNF-TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF----------- 62 (362)
T ss_dssp CEEEEEE--------EEESSSS-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEeE--------EEEECCE-EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE-----------
Confidence 4666665 4566543 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... .....+.+|.....|. .+..++... ......+++++++++.++|++++++++.+|||||
T Consensus 63 ~g~~i~~~~~~----~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq 138 (362)
T 2it1_A 63 DEKDVTELPPK----DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQ 138 (362)
T ss_dssp TTEECTTSCGG----GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred CCEECCcCCHh----HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHH
Confidence 22221110000 0011222332222221 111111110 1223345678999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 139 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 210 (362)
T 2it1_A 139 QQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREG 210 (362)
T ss_dssp HHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999765 999999999999999999999999743
No 68
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.9e-38 Score=321.59 Aligned_cols=202 Identities=22% Similarity=0.207 Sum_probs=146.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|.+++ .+.+||++||+||||||||||+|+|+|+++|+.|+|..
T Consensus 21 ~l~~~~l--------~~~y~~~-~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~----------- 80 (279)
T 2ihy_A 21 LIQLDQI--------GRMKQGK-TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL----------- 80 (279)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE-----------
T ss_pred eEEEEeE--------EEEECCE-EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE-----------
Confidence 5777775 4566543 3455555 35799999999999999999999999999999999852
Q ss_pred ccchhh--hhHHHHHHHHHHHhhccccccc-chh--hhhchhhh-------hc--CchHHHHHHHHHHhhcCCchhhccc
Q 040300 148 RGSELQ--NYFTRILEDNLKAIIKPQYVDH-IPK--AVQGNVGQ-------VL--DQKDERDMKADLCTDLDLNQVIDRN 213 (605)
Q Consensus 148 ~g~~l~--~~~~~~~~~~~~~~~~~q~~~~-~~~--~~~~~v~~-------~l--~~~~~~~~~~~~l~~l~L~~~~dr~ 213 (605)
.|.++. ....... .....+.+|.... ... .+..++.. .. ......+++.++++.+||.+.++++
T Consensus 81 ~g~~~~~~~~~~~~~--~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 158 (279)
T 2ihy_A 81 FGKMPGKVGYSAETV--RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY 158 (279)
T ss_dssp TTBCCC---CCHHHH--HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred CCEEcccccCCHHHH--cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC
Confidence 121111 0000000 0001111221100 000 11111100 00 1123356788999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEE--EEEecCHhHHHhhcCEEEEEeC
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV--IVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tv--ivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.++|+|| |+||||++++..+||+|++|+.
T Consensus 159 ~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 159 IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKD 238 (279)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEET
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999997668999 9999999999999999999974
Q ss_pred c
Q 040300 292 K 292 (605)
Q Consensus 292 ~ 292 (605)
+
T Consensus 239 G 239 (279)
T 2ihy_A 239 G 239 (279)
T ss_dssp T
T ss_pred C
Confidence 3
No 69
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.5e-38 Score=332.08 Aligned_cols=201 Identities=23% Similarity=0.333 Sum_probs=149.1
Q ss_pred eEEEecCCcccCCCceEEeCCCce-eeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTF-KLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f-~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.|| +++|+.... .|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|..
T Consensus 3 ~l~i~~l--------~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i---------- 64 (353)
T 1oxx_K 3 RIIVKNV--------SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF---------- 64 (353)
T ss_dssp CEEEEEE--------EEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE----------
T ss_pred EEEEEeE--------EEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE----------
Confidence 4666665 456754321 455555 35799999999999999999999999999999999852
Q ss_pred hccchhhh-----hHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 147 FRGSELQN-----YFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 147 ~~g~~l~~-----~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|.++.. ... ......+.+|.....|. .+..++... +.....+++++++++.++|++++++++.
T Consensus 65 -~g~~i~~~~~~~~~~----~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~ 139 (353)
T 1oxx_K 65 -DDRLVASNGKLIVPP----EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139 (353)
T ss_dssp -TTEEEEETTEESSCG----GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred -CCEECcccccccCCh----hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChh
Confidence 1211110 000 00011222332222221 111111111 1123345678999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 140 ~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G 217 (353)
T 1oxx_K 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG 217 (353)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999764 999999999999999999999999743
No 70
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.5e-37 Score=330.36 Aligned_cols=200 Identities=25% Similarity=0.360 Sum_probs=147.1
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|.+++ .+.+||+++|+||||||||||||+|+|+++|+.|+|..
T Consensus 11 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i----------- 70 (372)
T 1v43_A 11 EVKLENL--------TKRFGNF-TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF----------- 70 (372)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred eEEEEEE--------EEEECCE-EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE-----------
Confidence 5777765 4567542 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 148 RGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 148 ~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++...... .....+.+|.....|. .+..++... ......+++++++++.++|++++++++.+|||||
T Consensus 71 ~g~~i~~~~~~----~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq 146 (372)
T 1v43_A 71 GDRDVTYLPPK----DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQ 146 (372)
T ss_dssp TTEECTTSCGG----GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSC
T ss_pred CCEECCCCChh----hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence 12111100000 0011122222111111 111111110 1122345678999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 147 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 218 (372)
T 1v43_A 147 RQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRG 218 (372)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999765 999999999999999999999999743
No 71
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=329.33 Aligned_cols=197 Identities=24% Similarity=0.259 Sum_probs=164.7
Q ss_pred eeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|+. ....+++++|++.+| |+++|+||||||||||+|+|+|+++ ++|+|. +..+. ...++|+
T Consensus 26 ~~~y~~~~~~~L~~vsl~i~~G-----e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 26 TAKYTEGGNAILENISFSISPG-----QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp EEESSSSSCCSEEEEEEEECTT-----CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EEEecCCCeEEeeceeEEEcCC-----CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEE
Confidence 788852 234789999999988 6899999999999999999999998 889885 22221 1469999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCc-----------CChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVN-----------LSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----------LSGGe~QRvaiA~aL~~~p~ 487 (605)
||+... |.+||++++... . ......+.++++.+++.++.++++.+ |||||||||+|||||+++|+
T Consensus 100 ~Q~~~l-f~~tv~enl~~~--~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 100 PQKVFI-FSGTFRKNLDPN--A-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp SCCCCC-CSEEHHHHHCTT--C-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCccc-CccCHHHHhhhc--c-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 999754 567999998421 1 12345678899999999999999998 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||+..+..+.+.|+++. .+.|+|+||||++.+ ..||||++|+++.. ...++|++++..
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-~~aDri~vl~~G~i--~~~g~~~el~~~ 243 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-LECDQFLVIEENKV--RQYDSILELYHY 243 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-TTCSEEEEEETTEE--EEESSHHHHHHC
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-HhCCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999863 479999999998765 45999999997554 456899998764
No 72
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.7e-37 Score=330.29 Aligned_cols=200 Identities=22% Similarity=0.368 Sum_probs=149.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYF 147 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~ 147 (605)
+|++.|| +++|+.. ..|++++ .+.+||+++|+||||||||||||+|+|+++|+.|+|..
T Consensus 3 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i----------- 62 (372)
T 1g29_1 3 GVRLVDV--------WKVFGEV-TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI----------- 62 (372)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-----------
T ss_pred EEEEEeE--------EEEECCE-EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE-----------
Confidence 4666665 5567542 2455555 35799999999999999999999999999999999852
Q ss_pred ccchhhh------hHHHHHHHHHHHhhcccccccchh-hhhchhhhh-----cCchHHHHHHHHHHhhcCCchhhcccCC
Q 040300 148 RGSELQN------YFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQV-----LDQKDERDMKADLCTDLDLNQVIDRNVG 215 (605)
Q Consensus 148 ~g~~l~~------~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~~-----l~~~~~~~~~~~~l~~l~L~~~~dr~v~ 215 (605)
.|.++.. ... ......+.+|.....|. .+..++... ......+++++++++.++|++++++++.
T Consensus 63 ~g~~~~~~~~~~~~~~----~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 63 GDKLVADPEKGIFVPP----KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp TTEEEEEGGGTEECCG----GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCEECccccccccCCH----hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcc
Confidence 1211110 000 00012223333222222 111111110 1223345678999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+|||||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|+||||++++..+||+|++|+.+
T Consensus 139 ~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 216 (372)
T 1g29_1 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216 (372)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999765 999999999999999999999999743
No 73
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.1e-37 Score=313.25 Aligned_cols=203 Identities=24% Similarity=0.292 Sum_probs=142.4
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcC--CCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGK--LKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~--l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+ ++|+.|++.
T Consensus 3 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~---------- 63 (250)
T 2d2e_A 3 QLEIRDL--------WASIDGE-TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL---------- 63 (250)
T ss_dssp EEEEEEE--------EEEETTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE----------
T ss_pred eEEEEeE--------EEEECCE-EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE----------
Confidence 4666665 5567543 3455555 3579999999999999999999999998 789999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhhh----h----cCchHHHHHHHHHHhhcCC-chhhcccCC
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVGQ----V----LDQKDERDMKADLCTDLDL-NQVIDRNVG 215 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~~----~----l~~~~~~~~~~~~l~~l~L-~~~~dr~v~ 215 (605)
+.|.++......... ....++.+|.....+. .+...+.. . .......+++.++++.+|| .+..++++.
T Consensus 64 -~~g~~~~~~~~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 141 (250)
T 2d2e_A 64 -LDGENILELSPDERA-RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN 141 (250)
T ss_dssp -ETTEECTTSCHHHHH-HTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT
T ss_pred -ECCEECCCCCHHHHH-hCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 223222111000000 0111223333222111 01111100 0 0112234678889999999 588999999
Q ss_pred C-CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhh-cCEEEEEeCc
Q 040300 216 D-LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL-SDFICCLYGK 292 (605)
Q Consensus 216 ~-LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~-~D~i~vl~g~ 292 (605)
+ |||||||||+|||||+++|++||||||||+||+..+..+.++|+++.++|+|||+||||++++..+ ||+|++|+.+
T Consensus 142 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G 220 (250)
T 2d2e_A 142 EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDG 220 (250)
T ss_dssp CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECC
Confidence 9 999999999999999999999999999999999999999999999977799999999999999988 5999999743
No 74
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.5e-37 Score=311.08 Aligned_cols=196 Identities=24% Similarity=0.301 Sum_probs=140.9
Q ss_pred eEEEecCCcccCCCceEEe-CCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRY-GPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~y-g~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
-|++.|| +++| +.+...|.+++ .+.+||++||+||||||||||+|+|+|+++|+.|+|.
T Consensus 7 ~~~~~~l--------~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~----------- 67 (247)
T 2ff7_A 7 DITFRNI--------RFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL----------- 67 (247)
T ss_dssp EEEEEEE--------EEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-----------
T ss_pred ceeEEEE--------EEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-----------
Confidence 4666665 4566 22223455555 3579999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcc-----------
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDR----------- 212 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr----------- 212 (605)
+.|.++.......... ..++.+|.... +..++.+.+. .....+++.++++.+++.+++++
T Consensus 68 i~g~~~~~~~~~~~~~--~i~~v~Q~~~l----~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 141 (247)
T 2ff7_A 68 IDGHDLALADPNWLRR--QVGVVLQDNVL----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141 (247)
T ss_dssp ETTEETTTSCHHHHHH--HEEEECSSCCC----TTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCST
T ss_pred ECCEEhhhCCHHHHHh--cEEEEeCCCcc----ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhC
Confidence 3333332211110111 12333443221 2223333221 11123456677777777665554
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
++.+|||||||||+|||||+++|++||||||||+||+..+..+.++|+++. +|+|||+||||++++.. ||+|++|..
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~ 218 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEK 218 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999995 59999999999999865 999999974
No 75
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.9e-37 Score=309.61 Aligned_cols=195 Identities=28% Similarity=0.404 Sum_probs=146.6
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhc
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFR 148 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~ 148 (605)
+|++.||.+. .+. .+.+|.+ .+||+++|+||||||||||+|+|+|+++|+ |++. +.
T Consensus 4 ~l~~~~l~~~---~vl---~~vsl~i------~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~-----------~~ 59 (249)
T 2qi9_C 4 VMQLQDVAES---TRL---GPLSGEV------RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ-----------FA 59 (249)
T ss_dssp EEEEEEEEET---TTE---EEEEEEE------ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE-----------ET
T ss_pred EEEEEceEEE---EEE---eeeEEEE------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE-----------EC
Confidence 5778877653 111 1224555 699999999999999999999999999999 9985 23
Q ss_pred cchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHH
Q 040300 149 GSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQR 224 (605)
Q Consensus 149 g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QR 224 (605)
|.++..+...... ....+.+|.....+. .++.+.+. ....++++.++++.+||.+.+++++.+||||||||
T Consensus 60 g~~~~~~~~~~~~--~~i~~v~q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr 134 (249)
T 2qi9_C 60 GQPLEAWSATKLA--LHRAYLSQQQTPPFA---TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQR 134 (249)
T ss_dssp TEEGGGSCHHHHH--HHEEEECSCCCCCTT---CBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHH
T ss_pred CEECCcCCHHHHh--ceEEEECCCCccCCC---CcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 3333221111111 112334443322221 12322210 00015678899999999999999999999999999
Q ss_pred HHHHHHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 225 FAIAVVAVQNAE-------IYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 225 vaIA~aL~~~p~-------vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|+||+||+.+|+ +|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||++++|+.+
T Consensus 135 v~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G 209 (249)
T 2qi9_C 135 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGG 209 (249)
T ss_dssp HHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999 99999999999999999999999999766999999999999999999999999743
No 76
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-38 Score=312.23 Aligned_cols=194 Identities=23% Similarity=0.363 Sum_probs=144.9
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.+|++.||. ++|+. ..|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|++..
T Consensus 9 ~~l~~~~ls--------~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~---------- 68 (214)
T 1sgw_A 9 SKLEIRDLS--------VGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY---------- 68 (214)
T ss_dssp CEEEEEEEE--------EESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE----------
T ss_pred ceEEEEEEE--------EEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE----------
Confidence 367777765 45654 3455555 35799999999999999999999999999999999852
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchh-hhhchhh---hhcC-chHHHHHHHHHHhhcCCchhhcccCCCCChHH
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQGNVG---QVLD-QKDERDMKADLCTDLDLNQVIDRNVGDLSGGE 221 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~v~---~~l~-~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe 221 (605)
.|.++..+ .....+.+|.....+. .+..++. .... ... .+++.++++.+||++. ++++.+|||||
T Consensus 69 -~g~~~~~~-------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGq 138 (214)
T 1sgw_A 69 -NGVPITKV-------KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDL-KKKLGELSQGT 138 (214)
T ss_dssp -TTEEGGGG-------GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHH
T ss_pred -CCEEhhhh-------cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcC-CCChhhCCHHH
Confidence 22222100 0011223332221111 1111111 0000 112 4678899999999988 99999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 222 LQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 222 ~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||++||+||+.+|++|||||||++||+..+..+.++|+++.++|+|||+||||++++..+||+++++.+
T Consensus 139 kqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~ 208 (214)
T 1sgw_A 139 IRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYST 208 (214)
T ss_dssp HHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCC
Confidence 9999999999999999999999999999999999999999976689999999999999999999887654
No 77
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.2e-36 Score=311.30 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=143.9
Q ss_pred ceEEEecCCcccCCCceEEeCC--CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGP--NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~--~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
.+|++.||.+ +|+. ....|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|.
T Consensus 15 ~~l~~~~l~~--------~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~--------- 77 (271)
T 2ixe_A 15 GLVKFQDVSF--------AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL--------- 77 (271)
T ss_dssp CCEEEEEEEE--------CCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---------
T ss_pred ceEEEEEEEE--------EeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE---------
Confidence 4688887654 5543 112344444 3479999999999999999999999999999999985
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc-------Cc-hH-----HHHHHHHHHhhc--CCchh
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL-------DQ-KD-----ERDMKADLCTDL--DLNQV 209 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l-------~~-~~-----~~~~~~~~l~~l--~L~~~ 209 (605)
+.|.++..+....... ...+.+|.....+ .++.+.+ .. .. ....+.++++.+ |+...
T Consensus 78 --~~g~~i~~~~~~~~~~--~i~~v~Q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 149 (271)
T 2ixe_A 78 --LDGEPLVQYDHHYLHT--QVAAVGQEPLLFG----RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149 (271)
T ss_dssp --ETTEEGGGBCHHHHHH--HEEEECSSCCCCS----SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB
T ss_pred --ECCEEcccCCHHHHhc--cEEEEecCCcccc----ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhh
Confidence 2333332211111111 1233344322211 1222211 01 11 112345677777 78888
Q ss_pred hcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEE
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
+++++.+|||||||||+|||||+.+|++||||||||+||+..+..+.++|+++.+ .|+|||+||||++++.. ||+|++
T Consensus 150 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~ 228 (271)
T 2ixe_A 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILF 228 (271)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEE
T ss_pred hcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEE
Confidence 8999999999999999999999999999999999999999999999999999975 48999999999999875 999999
Q ss_pred EeCc
Q 040300 289 LYGK 292 (605)
Q Consensus 289 l~g~ 292 (605)
|..+
T Consensus 229 l~~G 232 (271)
T 2ixe_A 229 LKEG 232 (271)
T ss_dssp EETT
T ss_pred EECC
Confidence 9743
No 78
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-36 Score=310.01 Aligned_cols=202 Identities=30% Similarity=0.399 Sum_probs=145.3
Q ss_pred eEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcC--CCCCCceeeCCCChhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGK--LKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~--l~p~~G~i~~~~~~~~~~~ 145 (605)
+|++.|| +++|+.. ..|++++ .+.+||++||+||||||||||+|+|+|+ ++|+.|+|.
T Consensus 20 ~l~~~~l--------~~~y~~~-~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~---------- 80 (267)
T 2zu0_C 20 MLSIKDL--------HVSVEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE---------- 80 (267)
T ss_dssp CEEEEEE--------EEEETTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE----------
T ss_pred eEEEEeE--------EEEECCE-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE----------
Confidence 5777775 4566542 3455555 3579999999999999999999999999 468999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhh-hhchhh----hh--------cCchHHHHHHHHHHhhcCCc-hhhc
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA-VQGNVG----QV--------LDQKDERDMKADLCTDLDLN-QVID 211 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~v~----~~--------l~~~~~~~~~~~~l~~l~L~-~~~d 211 (605)
+.|.++..+...... .....+.+|.....+.. +...+. .. ....+..++++++++.+||. .+.+
T Consensus 81 -~~g~~i~~~~~~~~~-~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 158 (267)
T 2zu0_C 81 -FKGKDLLALSPEDRA-GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT 158 (267)
T ss_dssp -ETTEEGGGSCHHHHH-HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTT
T ss_pred -ECCEECCcCCHHHHh-hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 223322211100000 01122233332211110 000000 00 01122346788999999996 5889
Q ss_pred ccCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhh-cCEEEEE
Q 040300 212 RNVG-DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL-SDFICCL 289 (605)
Q Consensus 212 r~v~-~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~-~D~i~vl 289 (605)
+++. +|||||||||+|||||+.+|++||||||||+||+..+..+.++|+++.++|+|||+||||++++..+ ||++++|
T Consensus 159 ~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp SBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 9997 5999999999999999999999999999999999999999999999977799999999999999886 9999999
Q ss_pred eC
Q 040300 290 YG 291 (605)
Q Consensus 290 ~g 291 (605)
+.
T Consensus 239 ~~ 240 (267)
T 2zu0_C 239 YQ 240 (267)
T ss_dssp ET
T ss_pred EC
Confidence 64
No 79
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=7.1e-36 Score=308.04 Aligned_cols=184 Identities=23% Similarity=0.360 Sum_probs=146.7
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
..+++++|++.+| |+++|+||||||||||+|+|+|+++|++|++. +. ..++|+||+... +..||++++.
T Consensus 52 ~vl~~isl~i~~G-----e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~---~~-g~i~~v~Q~~~l-~~~tv~enl~- 120 (290)
T 2bbs_A 52 PVLKDINFKIERG-----QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HS-GRISFCSQNSWI-MPGTIKENII- 120 (290)
T ss_dssp CSEEEEEEEECTT-----CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE---CC-SCEEEECSSCCC-CSSBHHHHHH-
T ss_pred eEEEeeEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---EC-CEEEEEeCCCcc-CcccHHHHhh-
Confidence 4689999999888 68999999999999999999999999999984 22 259999998754 4469999986
Q ss_pred hhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~ 505 (605)
... . ......++++.+++.+.++ +++.+|||||||||+|||||+++|++|||||||++||+.++..
T Consensus 121 ~~~--~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 197 (290)
T 2bbs_A 121 GVS--Y-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 197 (290)
T ss_dssp TTC--C-CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred Ccc--c-chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHH
Confidence 221 1 2223345566666654333 3458999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 506 AAKVI-KRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 506 l~~~l-~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+++.+ +++ . .++|||+||||++++. .|||+++|+++.. ...+++++++.
T Consensus 198 i~~~ll~~~-~-~~~tviivtHd~~~~~-~~d~i~~l~~G~i--~~~g~~~~l~~ 247 (290)
T 2bbs_A 198 IFESCVCKL-M-ANKTRILVTSKMEHLK-KADKILILHEGSS--YFYGTFSELQN 247 (290)
T ss_dssp HHHHCCCCC-T-TTSEEEEECCCHHHHH-HSSEEEEEETTEE--EEEECHHHHHH
T ss_pred HHHHHHHHh-h-CCCEEEEEecCHHHHH-cCCEEEEEECCeE--EEeCCHHHHhh
Confidence 99864 454 2 3899999999999986 5999999986543 35578888865
No 80
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.8e-36 Score=312.94 Aligned_cols=198 Identities=25% Similarity=0.310 Sum_probs=143.4
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
..|++.| ++++|+.....|++++ .+++||++||+||||||||||+++|+|+++|+.|+|.
T Consensus 52 ~~i~~~~--------vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~----------- 112 (306)
T 3nh6_A 52 GRIEFEN--------VHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR----------- 112 (306)
T ss_dssp CCEEEEE--------EEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE-----------
T ss_pred CeEEEEE--------EEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE-----------
Confidence 3577766 4567754444566666 4689999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCch-----------hhcc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQ-----------VIDR 212 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~-----------~~dr 212 (605)
+.|.++..+....+.. ..++.+| .|..+.+++.+.+. .......+.++++.+++.+ ..++
T Consensus 113 i~G~~i~~~~~~~~r~--~i~~v~Q----~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 113 IDGQDISQVTQASLRS--HIGVVPQ----DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTEETTSBCHHHHHH--TEEEECS----SCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred ECCEEcccCCHHHHhc--ceEEEec----CCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 3344433322111111 1223333 33333344443321 1111233444555555543 4455
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
...+||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++.+ ++|||+||||++.+.. ||+|++|+.+
T Consensus 187 ~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHc-CCEEEEEECC
Confidence 6689999999999999999999999999999999999999999999999875 7999999999999987 9999999743
No 81
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.9e-36 Score=304.09 Aligned_cols=184 Identities=22% Similarity=0.343 Sum_probs=137.8
Q ss_pred ceEEeCCC---ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHH
Q 040300 83 TTHRYGPN---TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTR 158 (605)
Q Consensus 83 ~~~~yg~~---~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~ 158 (605)
++++|+.. ...|++++ .+. |++++|+||||||||||+|+|+|++ |+.|++.. .|.++... .
T Consensus 7 l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~-----------~g~~~~~~-~- 71 (263)
T 2pjz_A 7 VGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFI-----------NGMEVRKI-R- 71 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE-----------TTEEGGGC-S-
T ss_pred EEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE-----------CCEECcch-H-
Confidence 45566541 23466665 357 9999999999999999999999999 99999852 22211100 0
Q ss_pred HHHHHHHHh-hcccccccchhhhhchhhhhcCc-----hHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHHHHH
Q 040300 159 ILEDNLKAI-IKPQYVDHIPKAVQGNVGQVLDQ-----KDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 159 ~~~~~~~~~-~~~q~~~~~~~~~~~~v~~~l~~-----~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
...... +.+|... . ..++.+.+.. ...++++.++++.++|. +.+++++.+||||||||++||+||
T Consensus 72 ---~~~~i~~~v~Q~~~----l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 72 ---NYIRYSTNLPEAYE----I-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp ---CCTTEEECCGGGSC----T-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred ---HhhheEEEeCCCCc----c-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 000011 2222211 1 1122221110 11245688999999999 999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcC-EEEEEeCc
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD-FICCLYGK 292 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D-~i~vl~g~ 292 (605)
+.+|++|||||||++||+..+..+.++|+++.+ |||+||||++++..+|| ++++|..+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 999999999999999999999999999999864 99999999999999999 99999743
No 82
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.5e-37 Score=307.25 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=134.4
Q ss_pred ceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHH
Q 040300 83 TTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILE 161 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~ 161 (605)
++++|+.+...|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|.. .|.++........
T Consensus 7 l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~g~~~~~~~~~~~- 74 (243)
T 1mv5_A 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI-----------DGQPIDNISLENW- 74 (243)
T ss_dssp EEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE-----------TTEESTTTSCSCC-
T ss_pred EEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-----------CCEEhhhCCHHHH-
Confidence 4455622222355554 35799999999999999999999999999999999852 2221111000000
Q ss_pred HHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhc-----------ccCCCCChHHHHHHH
Q 040300 162 DNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVID-----------RNVGDLSGGELQRFA 226 (605)
Q Consensus 162 ~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~d-----------r~v~~LSGGe~QRva 226 (605)
.-...+.+|. +..+..++.+.+. .....+++.++++.+++.++++ +++.+|||||||||+
T Consensus 75 -~~~i~~v~q~----~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 75 -RSQIGFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp -TTTCCEECCS----SCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred -HhhEEEEcCC----CccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 0001222332 2111123333221 1112345677888888876654 456899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
|||||+++|++|||||||++||+..+..+.+.|+++. +|+|||+||||++++. .||+|++|..
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEK 212 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEET
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEEC
Confidence 9999999999999999999999999999999999997 5999999999999886 5999999964
No 83
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.3e-35 Score=329.08 Aligned_cols=203 Identities=21% Similarity=0.343 Sum_probs=165.9
Q ss_pred hhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
++. +++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..
T Consensus 345 ~~v-~~~y~~~~~~~l~~v~~~i~~G-----~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 345 RNV-TFTYPGREVPALRNINLKIPAG-----KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp EEE-EECSSSSSCCSEEEEEEEECTT-----CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEE-EEEcCCCCCccccceeEEEcCC-----CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 344 8889742 45789999999988 68999999999999999999999999999985 22222 125
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhcc-----------CcCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQ-----------EVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++.. +..|+++++...... ....+.+.++++.+++.++.++ ...+|||||||||+|||||+
T Consensus 419 i~~v~Q~~~l-~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 419 VALVSQNVHL-FNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp EEEECSSCCC-CSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred CeEEccCCcC-CCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999754 567999998653211 1234567778888888765544 45899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++|||||||++||+.++..+.+.|+++. + |+|+|+||||++.+. .||||++|+++.. ...|+++++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~l~~~ 568 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIE-QADEIVVVEDGII--VERGTHSELLAQ 568 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTT-TCSEEEEEETTEE--EEEECHHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHH-hCCEEEEEECCEE--EEecCHHHHHHc
Confidence 9999999999999999999999999999984 3 899999999999886 6999999997554 356888888764
No 84
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-35 Score=331.09 Aligned_cols=209 Identities=31% Similarity=0.582 Sum_probs=155.0
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+..+| ...+ .+++||++||+|+||||||||+|+|+|+++|+.|++..... .+.+........ +...+
T Consensus 274 ~l~~~~~~~~l--~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~i~~~~q~~~~~-~~~tv 347 (538)
T 3ozx_A 274 KIIKKLGDFQL--VVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFPN-YDGTV 347 (538)
T ss_dssp CEEEEETTEEE--EECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---CEEEECSSCCCC-CSSBH
T ss_pred ceEEEECCEEE--EeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---eeEeechhcccc-cCCCH
Confidence 34556765333 2222 24699999999999999999999999999999999853210 001110000000 00000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
.+++... .. .... .....++++++.++|.+.+++++.+|||||||||+|||||+++|++|||
T Consensus 348 ~~~l~~~-~~---------------~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlL 409 (538)
T 3ozx_A 348 QQYLENA-SK---------------DALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVL 409 (538)
T ss_dssp HHHHHHH-CS---------------STTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHh-hh---------------hccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 0111000 00 0000 1123567889999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhc
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLA 314 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~ 314 (605)
||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|+++++..+....|...+.+.+.|+.
T Consensus 410 DEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (538)
T 3ozx_A 410 DQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLR 484 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHh
Confidence 999999999999999999999975 58999999999999999999999999988888877778777777776654
No 85
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.4e-35 Score=329.04 Aligned_cols=203 Identities=18% Similarity=0.305 Sum_probs=165.5
Q ss_pred hhheeeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
++. +++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..
T Consensus 345 ~~v-~~~y~~~~~~~l~~i~l~i~~G-----~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 345 KDV-TFTYQGKEKPALSHVSFSIPQG-----KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred EEE-EEEcCCCCccccccceEEECCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 344 8889742 44789999999988 68999999999999999999999999999985 22221 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccC-----------cCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQE-----------VVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-----------~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++.. |..|+++++...... ....+.+.++++.+++.++.++. ..+|||||||||+|||||+
T Consensus 419 i~~v~Q~~~l-~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 419 FALVSQNVHL-FNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred eEEEcCCCcc-ccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999754 567999998643211 12345567788888887665544 4799999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
++|++|||||||++||+.++..+.+.|+++. + |+|+|+||||++.+. .||||++|+++.. ...|+++++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i--~~~g~~~~l~~~ 568 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDEGEI--IERGRHADLLAQ 568 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999999999974 3 899999999999987 6999999996544 356888888764
No 86
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-34 Score=327.99 Aligned_cols=203 Identities=23% Similarity=0.349 Sum_probs=162.6
Q ss_pred hhheeeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cc
Q 040300 345 ETYARYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EF 413 (605)
Q Consensus 345 ~~~~~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~ 413 (605)
++. +++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +.
T Consensus 345 ~~v-~~~y~~~~~~~vl~~isl~i~~G-----~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 345 KNV-HFAYPARPEVPIFQDFSLSIPSG-----SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEE-EEECSSCTTSEEEEEEEEEECTT-----CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEE-EEEeCCCCCCccccceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 344 8889742 34789999999888 68999999999999999999999999999985 32222 13
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhccC-CCCHHHHHHHHhhcCCchhhcc-----------CcCcCChhHHHHHHHHHH
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRDS-YTHPQFVSDVMKPLLIEQLMDQ-----------EVVNLSGGELQRVALCLC 481 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~-----------~~~~LSGGe~QRvaiA~a 481 (605)
.++|+||++.. +..|+++++....... ....+.+.++++.+++.++.++ ...+|||||||||+||||
T Consensus 419 ~i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 419 KIGTVSQEPIL-FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp SEEEECSSCCC-CSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred ceEEEccCCcc-cCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 59999999754 5679999986532210 1245567788888888765433 348999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
|+++|++|||||||++||++++..+.+.|+++.+ ++|+|+||||++.+.. ||||++|+++.. ...|+++++.+
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i--~~~g~~~~l~~ 570 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIKN-ANMVAVLDQGKI--TEYGKHEELLS 570 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHHH-SSEEEEEETTEE--EEEECSCC---
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHh
Confidence 9999999999999999999999999999999853 7999999999999864 999999997554 34578888765
No 87
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-35 Score=330.36 Aligned_cols=199 Identities=18% Similarity=0.270 Sum_probs=164.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEeec
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYKP 419 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~~ 419 (605)
+++|++....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..++|+|
T Consensus 361 ~~~y~~~~~~l~~isl~i~~G-----~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 361 WFSYDKKKPVLKDITFHIKPG-----QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp ECCSSSSSCSCCSEEEECCTT-----CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEECCCCCccccceEEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 888875445789999999988 68999999999999999999999999999985 22222 13599999
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCc-----------CcCChhHHHHHHHHHHHccCCCE
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEV-----------VNLSGGELQRVALCLCLGKPADI 488 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----------~~LSGGe~QRvaiA~aL~~~p~l 488 (605)
|++. .|..|+++++...... ...+.+.++++..++.+..++.+ .+|||||||||+|||||+++|++
T Consensus 436 Q~~~-lf~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 436 QDTI-LFSTTVKENLKYGNPG--ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp TTCC-CCSSBHHHHHHSSSTT--CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCCc-cccccHHHHHhcCCCC--CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9975 4678999998643211 12234567777777776665554 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
|||||||++||++++..+.+.|+++. .|+|+|+||||++.+.. ||||++|+++.. ...|+++++...
T Consensus 513 lllDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i--~~~g~~~~l~~~ 579 (598)
T 3qf4_B 513 LILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEI--VEMGKHDELIQK 579 (598)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSE--EECSCHHHHHHT
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 99999999999999999999999984 48999999999999876 999999986554 467999998765
No 88
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.7e-35 Score=300.92 Aligned_cols=197 Identities=25% Similarity=0.299 Sum_probs=139.1
Q ss_pred ceEEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEIL 144 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 144 (605)
.+|++.||.+ +|+.. ...|++++ .+.+||+++|+||||||||||+|+|+|+++| .|++.
T Consensus 16 ~~l~i~~l~~--------~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~--------- 77 (260)
T 2ghi_A 16 VNIEFSDVNF--------SYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK--------- 77 (260)
T ss_dssp CCEEEEEEEE--------CCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE---------
T ss_pred CeEEEEEEEE--------EeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE---------
Confidence 3588877655 45431 12344444 3479999999999999999999999999987 79985
Q ss_pred hhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhh-----------
Q 040300 145 TYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVI----------- 210 (605)
Q Consensus 145 ~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~----------- 210 (605)
+.|.++..+...... -...+.+|.. ..+..++.+.+. .....+++.++++.+++.+..
T Consensus 78 --i~g~~i~~~~~~~~~--~~i~~v~Q~~----~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~ 149 (260)
T 2ghi_A 78 --IGGKNVNKYNRNSIR--SIIGIVPQDT----ILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIV 149 (260)
T ss_dssp --ETTEEGGGBCHHHHH--TTEEEECSSC----CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEE
T ss_pred --ECCEEhhhcCHHHHh--ccEEEEcCCC----cccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccc
Confidence 333333221110000 1122333332 222223333221 011133456677777775432
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
++++.+|||||||||+|||||+++|++|||||||++||+..+..+.+.|+++.+ ++|||+||||++++. .||+|++|+
T Consensus 150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~ 227 (260)
T 2ghi_A 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESIILLN 227 (260)
T ss_dssp SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEEEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEE
Confidence 467889999999999999999999999999999999999999999999999965 899999999999986 499999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 228 ~G 229 (260)
T 2ghi_A 228 KG 229 (260)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 89
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.8e-35 Score=327.57 Aligned_cols=199 Identities=20% Similarity=0.296 Sum_probs=162.1
Q ss_pred eeecCCc-eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEee
Q 040300 349 RYKYPTM-VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSYK 418 (605)
Q Consensus 349 ~~~y~~~-~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y~ 418 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..++|+
T Consensus 346 ~~~y~~~~~~~l~~isl~i~~G-----~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v 420 (578)
T 4a82_A 346 SFQYNDNEAPILKDINLSIEKG-----ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420 (578)
T ss_dssp EECSCSSSCCSEEEEEEEECTT-----CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred EEEcCCCCCcceeeeEEEECCC-----CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEE
Confidence 8888753 34789999999988 68999999999999999999999999999985 22222 1359999
Q ss_pred cCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHHccCCC
Q 040300 419 PQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCLGKPAD 487 (605)
Q Consensus 419 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL~~~p~ 487 (605)
||++.. |..|+++++..... ....+.+.++++..++.+..+ +...+|||||||||+|||||+++|+
T Consensus 421 ~Q~~~l-~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 421 QQDNIL-FSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp CSSCCC-CSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred eCCCcc-CcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 999754 56799999864321 223445566677666655443 3446899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 488 IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 488 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||++||++++..+.+.|+++. .++|+|+||||++.+.. ||||++|+++.. ...|+++++.+.
T Consensus 498 illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i--~~~g~~~el~~~ 565 (578)
T 4a82_A 498 ILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTITH-ADKIVVIENGHI--VETGTHRELIAK 565 (578)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTTT-CSEEEEEETTEE--EEEECHHHHHHT
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 999999999999999999999999873 37899999999999865 999999997554 466899998765
No 90
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.7e-35 Score=330.85 Aligned_cols=187 Identities=39% Similarity=0.581 Sum_probs=151.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee-----------cccc-------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS-----------DVEI------- 410 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~-----------~~~~------- 410 (605)
+++|++....+.+++ ++. +||+++|+||||||||||+|+|+|+++|++|++. +...
T Consensus 98 s~~yg~~~~~l~~vs-~i~-----~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 98 VHRYGVNAFVLYRLP-IVK-----DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp EEECSTTCCEEECCC-CCC-----TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred EEEECCCCeeeCCCC-CCC-----CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 777865322455555 444 4589999999999999999999999999999841 1110
Q ss_pred --CcceeEeecCcCCCC---CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 411 --PEFNVSYKPQKISPK---FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 411 --~~~~i~y~~q~~~~~---~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
....+++++|+.... +..|+.+++... . ....+.++++.++|.+.+++++.+|||||||||+|||||+++
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~--~---~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~ 246 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV--D---EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRK 246 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--C---CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhh--H---HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 123577888874321 234888876431 1 112467899999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcce
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSV 547 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~ 547 (605)
|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||||++|.++++.
T Consensus 247 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~vl~~~~~~ 307 (607)
T 3bk7_A 247 AHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVVYGEPGV 307 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEEEECCCccc
Confidence 999999999999999999999999999865 5999999999999999999999999987654
No 91
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-34 Score=324.79 Aligned_cols=203 Identities=20% Similarity=0.339 Sum_probs=162.8
Q ss_pred hhheeeecCC-ceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cce
Q 040300 345 ETYARYKYPT-MVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFN 414 (605)
Q Consensus 345 ~~~~~~~y~~-~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~ 414 (605)
++. +++|++ ....+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..
T Consensus 345 ~~v-~~~y~~~~~~~l~~isl~i~~G-----e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 345 ENV-EFRYFENTDPVLSGVNFSVKPG-----SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp EEE-EECSSSSSCCSEEEEEEEECTT-----CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred EEE-EEEcCCCCCcceeceEEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 344 888864 235789999999988 68999999999999999999999999999985 22221 235
Q ss_pred eEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcC-----------CchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 415 VSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLL-----------IEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 415 i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~-----------l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
++|+||++.. |..|+++++..... ........+.++..+ ++...++...+|||||||||+|||||+
T Consensus 419 i~~v~Q~~~l-f~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQETVL-FSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSSCCC-CSEEHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCCcC-cCccHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999754 56799999854321 122333444444444 444456778899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++|++|||||||++||++++..+.+.|+++. .|+|+|+||||++.+. .||||++|+++.. ...|+++++.+..
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i--~~~g~~~el~~~~ 568 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKV--AGFGTHKELLEHC 568 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEE--EEEECHHHHHHHC
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEE--EEECCHHHHHhCC
Confidence 9999999999999999999999999999973 4899999999999986 7999999997554 4668999987653
No 92
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.5e-35 Score=291.80 Aligned_cols=183 Identities=23% Similarity=0.368 Sum_probs=125.1
Q ss_pred eEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.||. ++|+. +...|++++ .+.+||+++|+||||||||||+|+|+|+++|+.|++...
T Consensus 6 ~l~~~~l~--------~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~--------- 68 (229)
T 2pze_A 6 EVVMENVT--------AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS--------- 68 (229)
T ss_dssp EEEEEEEE--------ECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEEC---------
T ss_pred eEEEEEEE--------EEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEEC---------
Confidence 57777655 45532 222344444 347999999999999999999999999999999998521
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC--chHHHHHHHHHHhhcCCchh-----------hccc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD--QKDERDMKADLCTDLDLNQV-----------IDRN 213 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~--~~~~~~~~~~~l~~l~L~~~-----------~dr~ 213 (605)
|. ..+.+|.....+ .++.+.+. ......+..++++.+++.+. .+++
T Consensus 69 --g~---------------i~~v~q~~~~~~----~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 127 (229)
T 2pze_A 69 --GR---------------ISFCSQFSWIMP----GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127 (229)
T ss_dssp --SC---------------EEEECSSCCCCS----BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT
T ss_pred --CE---------------EEEEecCCcccC----CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCC
Confidence 10 011111111111 11111110 00000112233334444332 3445
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV-VRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~-i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+||||||||++|||||+++|++|||||||++||+..+..+.+. ++++. .++|||+||||++++.. ||++++|..
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~ 204 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK-ADKILILHE 204 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHH-CSEEEEEET
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHh-CCEEEEEEC
Confidence 689999999999999999999999999999999999999999886 45654 38999999999999874 999999964
No 93
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-34 Score=323.09 Aligned_cols=185 Identities=37% Similarity=0.568 Sum_probs=149.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee-----------cccc-------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS-----------DVEI------- 410 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~-----------~~~~------- 410 (605)
+++|++....+.+++ ++.+| |+++|+||||||||||+|+|+|+++|++|++. +...
T Consensus 28 s~~yg~~~~~l~~vs-~i~~G-----e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~ 101 (538)
T 1yqt_A 28 VHRYGVNAFVLYRLP-VVKEG-----MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101 (538)
T ss_dssp EEECSTTCCEEECCC-CCCTT-----SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHH
T ss_pred EEEECCccccccCcC-cCCCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHH
Confidence 788865322455665 55555 89999999999999999999999999999841 1100
Q ss_pred --CcceeEeecCcCCCCC---cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 411 --PEFNVSYKPQKISPKF---QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 411 --~~~~i~y~~q~~~~~~---~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
....+++++|...... ..++.+++... . ....+.++++.+++....++++.+|||||||||+||+||+++
T Consensus 102 ~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~--~---~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~ 176 (538)
T 1yqt_A 102 KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA--D---ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRN 176 (538)
T ss_dssp HTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH--C---SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HHHhhhhhhhhhhhhhcchhhhccHHHHHhhh--h---HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1235788888753221 23787766421 1 112467899999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|+||||||||++||+.++..+.++|+++.+ .|+|||+||||++++..+||||++|+++.
T Consensus 177 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 177 ATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence 999999999999999999999999999865 59999999999999999999999998654
No 94
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6e-35 Score=292.97 Aligned_cols=184 Identities=27% Similarity=0.367 Sum_probs=126.6
Q ss_pred eEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
+|++.|| +++|+. +...|.+++ .+.+||+++|+||||||||||+|+|+|+++|+.|+|...
T Consensus 3 ~l~~~~l--------~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--------- 65 (237)
T 2cbz_A 3 SITVRNA--------TFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK--------- 65 (237)
T ss_dssp CEEEEEE--------EEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEEC---------
T ss_pred eEEEEEE--------EEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC---------
Confidence 4666665 456653 123355555 357999999999999999999999999999999998522
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc----C-chHHHHHHHH---HHhhcCCc-----hhhccc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL----D-QKDERDMKAD---LCTDLDLN-----QVIDRN 213 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l----~-~~~~~~~~~~---~l~~l~L~-----~~~dr~ 213 (605)
|. .++.+|... + ...++.+.+ . ......++.+ +.+.+++. ..++++
T Consensus 66 --g~---------------i~~v~Q~~~-~---~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 124 (237)
T 2cbz_A 66 --GS---------------VAYVPQQAW-I---QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEK 124 (237)
T ss_dssp --SC---------------EEEECSSCC-C---CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTT
T ss_pred --CE---------------EEEEcCCCc-C---CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCC
Confidence 10 011111110 0 001111110 0 0011111111 12223321 235788
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVR---SLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~---~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|. ++. +|+|||+||||++++. .||++++|.
T Consensus 125 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~~d~v~~l~ 202 (237)
T 2cbz_A 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-QVDVIIVMS 202 (237)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-GSSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-hCCEEEEEe
Confidence 99999999999999999999999999999999999999999999885 443 4899999999999986 699999996
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
.+
T Consensus 203 ~G 204 (237)
T 2cbz_A 203 GG 204 (237)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 95
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=313.04 Aligned_cols=197 Identities=23% Similarity=0.312 Sum_probs=146.4
Q ss_pred ceEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
.+|++.||. ++|+. +...|++++ .+++||+++|+||||||||||+|+|+|+++ +.|+|.
T Consensus 18 ~~i~~~~l~--------~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~---------- 78 (390)
T 3gd7_A 18 GQMTVKDLT--------AKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ---------- 78 (390)
T ss_dssp CCEEEEEEE--------EESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE----------
T ss_pred CeEEEEEEE--------EEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE----------
Confidence 368888764 46632 223456665 458999999999999999999999999997 889985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC--chHHHHHHHHHHhhcCCchhhcccCCC-------
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD--QKDERDMKADLCTDLDLNQVIDRNVGD------- 216 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~--~~~~~~~~~~~l~~l~L~~~~dr~v~~------- 216 (605)
+.|.++.......... ...+.+|.....+ .++.+.+. ....++++.++++.++|.+++++.+.+
T Consensus 79 -i~G~~i~~~~~~~~rr--~ig~v~Q~~~lf~----~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 79 -IDGVSWDSITLEQWRK--AFGVIPQKVFIFS----GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp -ESSCBTTSSCHHHHHH--TEEEESCCCCCCS----EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred -ECCEECCcCChHHHhC--CEEEEcCCcccCc----cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 3333332221111111 1233344332222 23443322 112345678899999999999999998
Q ss_pred ----CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 217 ----LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 217 ----LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
|||||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.+ +.|+|+||||++.+. .||+|++|+.+
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~-~~tvi~vtHd~e~~~-~aDri~vl~~G 229 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-DCTVILCEARIEAML-ECDQFLVIEEN 229 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTT-TSCEEEECSSSGGGT-TCSEEEEEETT
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEEcCHHHHH-hCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 899999999987665 59999999643
No 96
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=316.91 Aligned_cols=191 Identities=35% Similarity=0.547 Sum_probs=145.6
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccc--------cC--------------cceeEeecCcCCCC--
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVE--------IP--------------EFNVSYKPQKISPK-- 425 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~--------~~--------------~~~i~y~~q~~~~~-- 425 (605)
.+.+||++||+||||||||||+|+|+|+++|++|++.... .. .....+.+|.....
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 3566799999999999999999999999999999873100 00 01122333432110
Q ss_pred ----CcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 426 ----FQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 426 ----~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
...++.+++... .......+.++++.+++.+.+++++.+|||||||||+|||||+++|++|||||||++||+.
T Consensus 179 ~~~~~~~~v~~~l~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~ 255 (608)
T 3j16_B 179 AIKGPVQKVGELLKLR---MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255 (608)
T ss_dssp HCSSSSSHHHHHHHHH---CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred hhcchhhHHHHHHhhh---hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHH
Confidence 012344443221 1123456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcccccc
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGMNLF 564 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~~~~ 564 (605)
++..+.++|+++.+ .|+|||+||||++++.++||||++|.+++........|.+...+.+.+
T Consensus 256 ~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~~~~~~~~ 317 (608)
T 3j16_B 256 QRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIF 317 (608)
T ss_dssp HHHHHHHHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhHHHHHHHh
Confidence 99999999999854 589999999999999999999999998776544444454444443333
No 97
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.6e-33 Score=313.90 Aligned_cols=198 Identities=22% Similarity=0.331 Sum_probs=145.4
Q ss_pred ceEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
..|++.|+ +++|+.. ...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 340 ~~i~~~~v--------~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~---------- 401 (582)
T 3b5x_A 340 GEVDVKDV--------TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC---------- 401 (582)
T ss_pred CeEEEEEE--------EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE----------
Confidence 46777665 5577532 33566666 4689999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhcc---------
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDR--------- 212 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~dr--------- 212 (605)
+.|.++..+....+.. ..++.+| .|..+.+++.+.+. ....++++.++++.+++.+..++
T Consensus 402 -~~g~~~~~~~~~~~~~--~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~ 474 (582)
T 3b5x_A 402 -LDGHDVRDYKLTNLRR--HFALVSQ----NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474 (582)
T ss_pred -ECCEEhhhCCHHHHhc--CeEEEcC----CCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchh
Confidence 3343332221111111 1122233 33333334444321 11224556777888877665554
Q ss_pred --cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 213 --NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 213 --~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+||||++.+. .||+|++|+
T Consensus 475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b5x_A 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIE-QADEILVVD 552 (582)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-hCCEEEEEE
Confidence 4589999999999999999999999999999999999999999999999865 999999999999987 699999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
++
T Consensus 553 ~G 554 (582)
T 3b5x_A 553 EG 554 (582)
T ss_pred CC
Confidence 43
No 98
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.3e-33 Score=313.04 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=144.4
Q ss_pred EEEecCCcccCCCceEEeCCC--ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 70 IQIINLPKDLDKDTTHRYGPN--TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 70 i~i~nl~~~~~~~~~~~yg~~--~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
|++.|+ +++|+.. ...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 342 i~~~~v--------~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~----------- 402 (595)
T 2yl4_A 342 LEFKNV--------HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS----------- 402 (595)
T ss_dssp EEEEEE--------EEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE-----------
T ss_pred EEEEEE--------EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE-----------
Confidence 777664 5567532 23566666 4689999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhc---Cch---HHHHHHHHHHhhcCCchhhcc--------
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVL---DQK---DERDMKADLCTDLDLNQVIDR-------- 212 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l---~~~---~~~~~~~~~l~~l~L~~~~dr-------- 212 (605)
+.|.++..+....... ..++.+|. |..+.+++.+.+ ... ..++++.++++.+++.+..++
T Consensus 403 ~~g~~i~~~~~~~~~~--~i~~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~ 476 (595)
T 2yl4_A 403 LDGHDIRQLNPVWLRS--KIGTVSQE----PILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 476 (595)
T ss_dssp ETTEETTTBCHHHHHH--SEEEECSS----CCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCB
T ss_pred ECCEEhhhCCHHHHHh--ceEEEccC----CcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCccccccc
Confidence 3344333221111111 12233443 322333444332 111 234567788888888655433
Q ss_pred ---cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 213 ---NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 213 ---~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+||||++.+.. ||+|++|
T Consensus 477 ~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~~l 554 (595)
T 2yl4_A 477 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKN-ANMVAVL 554 (595)
T ss_dssp CSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHH-SSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHc-CCEEEEE
Confidence 3389999999999999999999999999999999999999999999999877 8999999999999874 9999999
Q ss_pred eCc
Q 040300 290 YGK 292 (605)
Q Consensus 290 ~g~ 292 (605)
+++
T Consensus 555 ~~G 557 (595)
T 2yl4_A 555 DQG 557 (595)
T ss_dssp ETT
T ss_pred ECC
Confidence 743
No 99
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.98 E-value=4.7e-33 Score=313.79 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=145.0
Q ss_pred ceEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
..|++.|+. ++|+.+ ...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 340 ~~i~~~~v~--------~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~---------- 401 (582)
T 3b60_A 340 GDLEFRNVT--------FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL---------- 401 (582)
T ss_dssp CCEEEEEEE--------ECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE----------
T ss_pred CcEEEEEEE--------EEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE----------
Confidence 467777754 456532 23455555 3579999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC----chHHHHHHHHHHhhcCCchhhcc---------
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD----QKDERDMKADLCTDLDLNQVIDR--------- 212 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~----~~~~~~~~~~~l~~l~L~~~~dr--------- 212 (605)
+.|.++..+....... ..++.+|. |..+.+++.+.+. ....++++.++++.+++.+..++
T Consensus 402 -~~g~~~~~~~~~~~~~--~i~~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~ 474 (582)
T 3b60_A 402 -MDGHDLREYTLASLRN--QVALVSQN----VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 474 (582)
T ss_dssp -ETTEETTTBCHHHHHH--TEEEECSS----CCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred -ECCEEccccCHHHHHh--hCeEEccC----CcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccc
Confidence 3344333221111111 12333443 3223334443321 11124557778888887665544
Q ss_pred --cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 213 --NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 213 --~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+||||++.+. .||+|++|+
T Consensus 475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b60_A 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVE 552 (582)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEE
Confidence 4589999999999999999999999999999999999999999999999876 999999999999886 699999997
Q ss_pred Cc
Q 040300 291 GK 292 (605)
Q Consensus 291 g~ 292 (605)
++
T Consensus 553 ~G 554 (582)
T 3b60_A 553 DG 554 (582)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 100
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.98 E-value=1.6e-32 Score=282.94 Aligned_cols=183 Identities=22% Similarity=0.318 Sum_probs=115.7
Q ss_pred cceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 67 FEAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 67 ~~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
...|++.||... +. ..|++++ .+.+|++++|+|+||||||||+|+|+|+++|+.|++..... +
T Consensus 38 ~~~l~~~~l~~~--------~~---~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~----i- 101 (290)
T 2bbs_A 38 DDSLSFSNFSLL--------GT---PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----I- 101 (290)
T ss_dssp --------------------CC---CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC----E-
T ss_pred CceEEEEEEEEc--------Cc---eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE----E-
Confidence 346777777642 11 1233333 23799999999999999999999999999999999853210 0
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcCc-hHHHHHHHHHHhhcCCchh-----------hccc
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQ-KDERDMKADLCTDLDLNQV-----------IDRN 213 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~l~~l~L~~~-----------~dr~ 213 (605)
++.+|.....+ .++.+.+.. .....+..++++.+++.+. +++.
T Consensus 102 ---------------------~~v~Q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 156 (290)
T 2bbs_A 102 ---------------------SFCSQNSWIMP----GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156 (290)
T ss_dssp ---------------------EEECSSCCCCS----SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC---
T ss_pred ---------------------EEEeCCCccCc----ccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCc
Confidence 11111111111 111111100 0001122334444455433 3345
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV-RSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i-~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
+.+||||||||++|||||+.+|++|||||||++||+..+..+++.+ +++. .|+|||+||||++++. .||++++|..+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i~~l~~G 234 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEG 234 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEEEEEETT
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEEEEEECC
Confidence 6899999999999999999999999999999999999999998864 5554 4899999999999986 59999999743
No 101
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=5.3e-33 Score=314.17 Aligned_cols=197 Identities=22% Similarity=0.281 Sum_probs=145.7
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
..|++.|+.. +|+.+...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 353 ~~i~~~~v~~--------~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~----------- 413 (598)
T 3qf4_B 353 GEIEFKNVWF--------SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL----------- 413 (598)
T ss_dssp CCEEEEEEEC--------CSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE-----------
T ss_pred CeEEEEEEEE--------ECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE-----------
Confidence 3677777654 5654333456665 4689999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhhcccC---------
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVIDRNV--------- 214 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~dr~v--------- 214 (605)
+.|.++..+....+.. ..++.+| .|..+.+++.+.+. ....++.+.++++..++.+..++.+
T Consensus 414 ~~g~~i~~~~~~~~r~--~i~~v~Q----~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 414 VDGIDIRKIKRSSLRS--SIGIVLQ----DTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp ETTEEGGGSCHHHHHH--HEEEECT----TCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred ECCEEhhhCCHHHHHh--ceEEEeC----CCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 3444444332211111 1233344 33333345544331 1112234566777777766555544
Q ss_pred --CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 215 --GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 215 --~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
.+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+||||++.+.. ||+|++|++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~ 564 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLNTIKN-ADLIIVLRD 564 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT-TSEEEEESCCTTHHHH-CSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHc-CCEEEEEEC
Confidence 79999999999999999999999999999999999999999999999864 8999999999999876 999999964
No 102
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.98 E-value=1.1e-32 Score=310.49 Aligned_cols=197 Identities=21% Similarity=0.316 Sum_probs=143.0
Q ss_pred eEEEecCCcccCCCceEEeCCC-ceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhh
Q 040300 69 AIQIINLPKDLDKDTTHRYGPN-TFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTY 146 (605)
Q Consensus 69 ai~i~nl~~~~~~~~~~~yg~~-~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 146 (605)
.|++.|+ +++|+.. ...|++++ .+++||++||+||||||||||+|+|+|+++|+.|++.
T Consensus 339 ~i~~~~v--------~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~----------- 399 (578)
T 4a82_A 339 RIDIDHV--------SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL----------- 399 (578)
T ss_dssp CEEEEEE--------EECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE-----------
T ss_pred eEEEEEE--------EEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE-----------
Confidence 5777765 4566542 23456665 4579999999999999999999999999999999985
Q ss_pred hccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhcCCchhh-----------cc
Q 040300 147 FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDLDLNQVI-----------DR 212 (605)
Q Consensus 147 ~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l~L~~~~-----------dr 212 (605)
+.|.++..+....... ..++.+| .|..+.+++.+.+. .....+++.++++..++.+.. ++
T Consensus 400 ~~g~~~~~~~~~~~r~--~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 400 IDGHNIKDFLTGSLRN--QIGLVQQ----DNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp ETTEEGGGSCHHHHHH--TEEEECS----SCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCEEhhhCCHHHHhh--heEEEeC----CCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 3444444332211111 1233334 33333445554331 111234455666666655443 34
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCc
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGK 292 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~ 292 (605)
...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+||||++.+.. ||+|++|+++
T Consensus 474 ~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G 551 (578)
T 4a82_A 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTITH-ADKIVVIENG 551 (578)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTTT-CSEEEEEETT
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHc-CCEEEEEECC
Confidence 4569999999999999999999999999999999999999999999999865 7999999999999865 9999999753
No 103
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=1.6e-31 Score=311.62 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=154.5
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecccc-CcceeEeecCcC-CCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI-PEFNVSYKPQKI-SPKF 426 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~-~~~~i~y~~q~~-~~~~ 426 (605)
++.|++. ..+++++|++.+| |+++|+||||||||||+|+|+| |.+.+... ...+++|++|+. ....
T Consensus 442 s~~yg~~-~iL~~vsl~I~~G-----e~v~LiGpNGsGKSTLLk~Lag------G~i~g~~~~~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 442 SLAYGAK-ILLNKTQLRLKRA-----RRYGICGPNGCGKSTLMRAIAN------GQVDGFPTQEECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEETTE-EEEEEEEEEEETT-----CEEEEECSTTSSHHHHHHHHHH------TCSTTCCCTTTSCEEETTCCCCCCCT
T ss_pred EEEECCE-EeEecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhC------CCcCCCccccceeEEEEccccccccc
Confidence 7788753 4689999999888 6899999999999999999995 22211111 123578999875 3345
Q ss_pred cCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040300 427 QSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIV 505 (605)
Q Consensus 427 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~ 505 (605)
..|+.+++...... . ...+.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.++..
T Consensus 510 ~ltv~e~l~~~~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~ 586 (986)
T 2iw3_A 510 DTSVLDFVFESGVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAW 586 (986)
T ss_dssp TSBHHHHHHTTCSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHH
T ss_pred CCcHHHHHHHhhcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH
Confidence 67999987541111 1 55678899999994 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhc
Q 040300 506 AAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLT 559 (605)
Q Consensus 506 l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~ 559 (605)
+.++|++ .|.|+|+||||++++..+|||+++|+++... ...+++.++..
T Consensus 587 l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv-~~~G~~~e~~~ 635 (986)
T 2iw3_A 587 LVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLR-KYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEE-EEESCHHHHHH
T ss_pred HHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeee-cCCCCHHHHHh
Confidence 9999987 3899999999999999999999999965432 24577777654
No 104
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2.8e-32 Score=307.52 Aligned_cols=198 Identities=19% Similarity=0.309 Sum_probs=142.8
Q ss_pred ceEEEecCCcccCCCceEEeCC-CceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhh
Q 040300 68 EAIQIINLPKDLDKDTTHRYGP-NTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILT 145 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~-~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 145 (605)
..|++.|+ +++|+. ....|++++ .+++||++||+||||||||||+++|+|+++|+.|++.
T Consensus 340 ~~i~~~~v--------~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~---------- 401 (587)
T 3qf4_A 340 GSVSFENV--------EFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE---------- 401 (587)
T ss_dssp CCEEEEEE--------EECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE----------
T ss_pred CcEEEEEE--------EEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE----------
Confidence 36777765 456643 223456555 4579999999999999999999999999999999985
Q ss_pred hhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchhhhhcC---chHHHHHHHHHHhhc-----------CCchhhc
Q 040300 146 YFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLD---QKDERDMKADLCTDL-----------DLNQVID 211 (605)
Q Consensus 146 ~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~~~l~---~~~~~~~~~~~l~~l-----------~L~~~~d 211 (605)
+.|.++..+....+.. ..++.+| .|..+.+++.+.+. .....+++.+.++.. |++...+
T Consensus 402 -i~g~~i~~~~~~~~r~--~i~~v~Q----~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 402 -VDELDVRTVKLKDLRG--HISAVPQ----ETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp -ESSSBGGGBCHHHHHH--HEEEECS----SCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred -ECCEEcccCCHHHHHh--heEEECC----CCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 3444443332211111 1233344 33334445554332 111112233333333 4455567
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 212 RNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+...+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+||||++.+. .||+|++|++
T Consensus 475 ~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~-~~d~i~vl~~ 552 (587)
T 3qf4_A 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIITQKIPTAL-LADKILVLHE 552 (587)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST-TCEEEEEESCHHHHT-TSSEEEEEET
T ss_pred CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC-CCEEEEEecChHHHH-hCCEEEEEEC
Confidence 78899999999999999999999999999999999999999999999999854 899999999999986 7999999975
Q ss_pred c
Q 040300 292 K 292 (605)
Q Consensus 292 ~ 292 (605)
+
T Consensus 553 G 553 (587)
T 3qf4_A 553 G 553 (587)
T ss_dssp T
T ss_pred C
Confidence 3
No 105
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=3.7e-31 Score=321.59 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=159.0
Q ss_pred eeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cceeEe
Q 040300 349 RYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EFNVSY 417 (605)
Q Consensus 349 ~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~~i~y 417 (605)
+++|++. ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|++. +.++. +..++|
T Consensus 394 ~~~y~~~~~~~vL~~isl~i~~G-----~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 468 (1284)
T 3g5u_A 394 HFSYPSRKEVQILKGLNLKVKSG-----QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468 (1284)
T ss_dssp EECCSSTTSCCSEEEEEEEECTT-----CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEcCCCCCCcceecceEEEcCC-----CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEE
Confidence 8889753 34799999999998 68999999999999999999999999999985 22221 125999
Q ss_pred ecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCch-----------hhccCcCcCChhHHHHHHHHHHHccCC
Q 040300 418 KPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQ-----------LMDQEVVNLSGGELQRVALCLCLGKPA 486 (605)
Q Consensus 418 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGe~QRvaiA~aL~~~p 486 (605)
+||++.. |..|+++++...... .....+.+.++..++.+ .......+|||||||||+|||||+++|
T Consensus 469 v~Q~~~l-~~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 469 VSQEPVL-FATTIAENIRYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp ECSSCCC-CSSCHHHHHHHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred EcCCCcc-CCccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 9999754 667999998643211 22334444444444432 334556789999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 487 DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 487 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
+|||||||||+||+++...+.+.|+++. .|+|+|+|||++..+.. ||||+||+++.. ...|+++++...
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i--~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVI--VEQGNHDELMRE 614 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCC--CCEECHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHHHHhC
Confidence 9999999999999999999999998863 48999999999999976 999999996654 356888888764
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.3e-31 Score=304.74 Aligned_cols=195 Identities=23% Similarity=0.287 Sum_probs=132.7
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHH---------------------HHHHcCCCCCeeeeec---------
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFI---------------------RMLAGLLKPDSVEDSD--------- 407 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLl---------------------k~L~Gl~~p~~G~i~~--------- 407 (605)
.+++++|++.+| |+++|+||||||||||+ +++.|+.+|+.|.+.+
T Consensus 33 ~L~~vsl~i~~G-----e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 33 NLKNIDVEIPRG-----KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp TCCSEEEEEETT-----SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred ceeccEEEECCC-----CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 588999999998 68999999999999998 9999999998655431
Q ss_pred cc---cCcceeEeecCcCCC-------------------CCcCcHHHHHHhh--hccCCCC----H------HHHHHHHh
Q 040300 408 VE---IPEFNVSYKPQKISP-------------------KFQSTVRHLLHQK--IRDSYTH----P------QFVSDVMK 453 (605)
Q Consensus 408 ~~---~~~~~i~y~~q~~~~-------------------~~~~tv~~~~~~~--~~~~~~~----~------~~~~~~l~ 453 (605)
.. .+...++|++|.... ...+||.+++... ....... . ....++++
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 00 112235565553211 1234566654321 0000000 0 01123588
Q ss_pred hcCCchh-hccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q 040300 454 PLLIEQL-MDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530 (605)
Q Consensus 454 ~l~l~~~-~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~ 530 (605)
.+||.+. +++++.+|||||||||+|||||+++|+ ||||||||+|||+.++..++++|+++.+ .|.|||+||||+++
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDT 266 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHH
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 8899865 799999999999999999999999998 9999999999999999999999999854 59999999999998
Q ss_pred HHhhcCEEEEE------eCCcceeeecCChhhhhccc
Q 040300 531 ATYLADRVIVY------EGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 531 ~~~~adrviv~------~g~~~~~~~~~~p~~~~~~~ 561 (605)
+. .||||++| +++. ....++|+++.+..
T Consensus 267 ~~-~~d~ii~l~~g~~~~~G~--i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 267 ML-AADYLIDIGPGAGIHGGE--VVAAGTPEEVMNDP 300 (670)
T ss_dssp HH-HCSEEEEECSSSGGGCCS--EEEEECHHHHHTCT
T ss_pred Hh-hCCEEEEecccccccCCE--EEEecCHHHHhcCc
Confidence 76 59999999 4332 34668888887653
No 107
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=1.2e-30 Score=317.94 Aligned_cols=202 Identities=22% Similarity=0.328 Sum_probs=164.8
Q ss_pred hhheeeecCCc--eeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------cc
Q 040300 345 ETYARYKYPTM--VKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------EF 413 (605)
Q Consensus 345 ~~~~~~~y~~~--~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------~~ 413 (605)
+++ +|+|++. ...+++++|++.+| |.++|+||+|||||||+++|.|+++|++|++. +.++. +.
T Consensus 419 ~nv-sF~Y~~~~~~~vL~~isl~i~~G-----~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 419 ENV-HFTYPSRPDVPILRGMNLRVNAG-----QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp EEE-EECCSSSTTSCSEEEEEEEECTT-----CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred EEe-eeeCCCCCCCceeeceEEeecCC-----cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 344 8999753 35799999999988 68999999999999999999999999999986 23222 13
Q ss_pred eeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhc-----------cCcCcCChhHHHHHHHHHHH
Q 040300 414 NVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMD-----------QEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 414 ~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGe~QRvaiA~aL 482 (605)
.|+|++|++. .|..|+++|+..... ..+.+.+.++++..+++++.+ ..-.+||||||||++|||||
T Consensus 493 ~i~~v~Q~~~-Lf~~TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 493 NVAVVSQEPA-LFNCTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp HEEEECSSCC-CCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred cccccCCcce-eeCCchhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence 5999999975 578899999865322 234456667777776654432 34468999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhcc
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTG 560 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~ 560 (605)
.++|+|||||||||+||+++...+.+.|+++. +|+|+|+|||++..+. .||+|+||+++.. ...|+.+++...
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~i~-~aD~Iivl~~G~i--ve~Gth~eL~~~ 642 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLSTIR-NADLIISCKNGQV--VEVGDHRALMAQ 642 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTTTT-TCSEEEEEETTEE--EEEECHHHHHTT
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHHHH-hCCEEEEeeCCee--eccCCHHHHHHh
Confidence 99999999999999999999999999999975 3899999999999886 5999999997654 456888888654
No 108
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.4e-29 Score=270.11 Aligned_cols=183 Identities=14% Similarity=0.079 Sum_probs=136.9
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCee-e-eeccccCcceeEeecCcCCC---CCcCcHHHHH
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV-E-DSDVEIPEFNVSYKPQKISP---KFQSTVRHLL 434 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G-~-i~~~~~~~~~i~y~~q~~~~---~~~~tv~~~~ 434 (605)
++++|++..| |+++|+||||||||||+|+|+|+.+|++| + +.........++|+||.... ....|+.+++
T Consensus 129 ~~vsl~i~~G-----e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni 203 (460)
T 2npi_A 129 EKIRMSNFEG-----PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT 203 (460)
T ss_dssp HHHHHHSSSC-----CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT
T ss_pred hcCceEeCCC-----CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh
Confidence 3566666655 79999999999999999999999999999 7 64111224568999998632 2234666544
Q ss_pred Hhhhc--cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHH--HccCCCE----EEEec-CCCCCCHHHHHH
Q 040300 435 HQKIR--DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLC--LGKPADI----YLIDE-PSAYLDSEQRIV 505 (605)
Q Consensus 435 ~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a--L~~~p~l----llLDE-Pt~~LD~~~~~~ 505 (605)
.... ........+.++++.+|+.+..+ +.+|||||+|||+|||| |+.+|++ ||||| ||++||+. +..
T Consensus 204 -~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~ 279 (460)
T 2npi_A 204 -WGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAE 279 (460)
T ss_dssp -CSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHH
T ss_pred -cccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHH
Confidence 2111 00011123456788899987776 89999999999999999 9999999 99999 99999998 555
Q ss_pred HHHHHHHHHhcCCcEEEEEecCHH------HHHhhcCE-----EEEEe-CCcceeeecCChhhhh
Q 040300 506 AAKVIKRFILHAKKTAFVVEHDFI------MATYLADR-----VIVYE-GQPSVDCVANAPQSLL 558 (605)
Q Consensus 506 l~~~l~~l~~~~g~tiivvsHD~~------~~~~~adr-----viv~~-g~~~~~~~~~~p~~~~ 558 (605)
+.+++++ .+.|+|+|+||.+ ++..+||| |++|+ ++.. . .++++++.
T Consensus 280 l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~i--v-~g~~~~~~ 337 (460)
T 2npi_A 280 LHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV--S-AVDDVYKR 337 (460)
T ss_dssp HHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTC--C-CCCHHHHH
T ss_pred HHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcE--E-ECCHHHHh
Confidence 5555544 4789999999977 88899999 99997 5543 2 57776663
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=5.7e-25 Score=256.24 Aligned_cols=96 Identities=29% Similarity=0.421 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEE
Q 040300 194 RDMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNA---EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269 (605)
Q Consensus 194 ~~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p---~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tv 269 (605)
..++.++++.+||.. .+++++.+|||||+|||+||+||+++| ++|||||||++||+..+..+.++|++|.++|.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 356778999999986 478999999999999999999999876 7999999999999999999999999998889999
Q ss_pred EEEecCHhHHHhhcCEEEEEe
Q 040300 270 IVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 270 ivvsHdl~~l~~~~D~i~vl~ 290 (605)
|+||||++++.. ||+|++|.
T Consensus 862 IvI~HdL~~i~~-ADrIivLg 881 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLG 881 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEE
T ss_pred EEEeCCHHHHHh-CCEEEEec
Confidence 999999999865 99999993
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=1.4e-25 Score=259.41 Aligned_cols=95 Identities=25% Similarity=0.369 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEE
Q 040300 195 DMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQN---AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVI 270 (605)
Q Consensus 195 ~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~---p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvi 270 (605)
.++.++++.+||.. .+++++.+|||||+|||+||++|+++ |+||||||||++||+..+..++++|++|++.|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999987 47999999999999999999999996 799999999999999999999999999988899999
Q ss_pred EEecCHhHHHhhcCEEEEEe
Q 040300 271 VVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 271 vvsHdl~~l~~~~D~i~vl~ 290 (605)
+||||++++ ..||+|++|.
T Consensus 788 visHdl~~i-~~aDrii~L~ 806 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIG 806 (842)
T ss_dssp EECCCHHHH-TTCSEEEEEC
T ss_pred EEcCCHHHH-HhCCEEEEEC
Confidence 999999999 6899999994
No 111
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.92 E-value=7.2e-25 Score=236.52 Aligned_cols=71 Identities=28% Similarity=0.281 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 468 LSGGELQRVALCLCLGKPA--DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
|||||||||+||++|+.+| ++|||||||+|||+..+..+.+.|+++. .|.|||+||||++++ .+|||+++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEE
Confidence 5999999999999999999 9999999999999999999999999985 489999999999887 479999999
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=4.5e-25 Score=255.60 Aligned_cols=94 Identities=30% Similarity=0.467 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE
Q 040300 196 MKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNA---EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271 (605)
Q Consensus 196 ~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p---~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv 271 (605)
++.++++.+||.. .+++++.+|||||+|||+||++|+++| ++|||||||++||+..+..++++|++|.+.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4568999999987 789999999999999999999999875 999999999999999999999999999888999999
Q ss_pred EecCHhHHHhhcCEEEEEe
Q 040300 272 VEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 272 vsHdl~~l~~~~D~i~vl~ 290 (605)
||||++++. .||+|++|.
T Consensus 904 isHdl~~i~-~aDrIivL~ 921 (972)
T 2r6f_A 904 IEHNLDVIK-TADYIIDLG 921 (972)
T ss_dssp ECCCHHHHT-TCSEEEEEC
T ss_pred EcCCHHHHH-hCCEEEEEc
Confidence 999999985 799999993
No 113
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=6.4e-25 Score=233.67 Aligned_cols=82 Identities=27% Similarity=0.368 Sum_probs=75.6
Q ss_pred ccCcCcCChhHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q 040300 462 DQEVVNLSGGELQRVALCLCLG------KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535 (605)
Q Consensus 462 ~~~~~~LSGGe~QRvaiA~aL~------~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~a 535 (605)
++++.+|||||+|||+||+||+ .+|++|||||||+|||+.++..++++|+++.. .|.|||+||||+++ ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence 5789999999999999999999 79999999999999999999999999999854 59999999999998 5679
Q ss_pred CEEEEEeCCc
Q 040300 536 DRVIVYEGQP 545 (605)
Q Consensus 536 drviv~~g~~ 545 (605)
||+++++++.
T Consensus 352 d~~~~l~~G~ 361 (365)
T 3qf7_A 352 DRKLRITGGV 361 (365)
T ss_dssp SCEEEEETTE
T ss_pred CEEEEEECCE
Confidence 9999998654
No 114
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=8.4e-25 Score=254.22 Aligned_cols=94 Identities=31% Similarity=0.428 Sum_probs=87.6
Q ss_pred HHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE
Q 040300 196 MKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNA---EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV 271 (605)
Q Consensus 196 ~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p---~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv 271 (605)
++.++++.+||.. .+++++.+|||||+|||+||++|+++| +||||||||++||+..+..++++|++|++.|.|||+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4568899999987 789999999999999999999999875 999999999999999999999999999888999999
Q ss_pred EecCHhHHHhhcCEEEEEe
Q 040300 272 VEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 272 vsHdl~~l~~~~D~i~vl~ 290 (605)
||||++++ ..||+|++|.
T Consensus 922 isHdl~~i-~~aDrIivL~ 939 (993)
T 2ygr_A 922 IEHNLDVI-KTSDWIIDLG 939 (993)
T ss_dssp ECCCHHHH-TTCSEEEEEE
T ss_pred EcCCHHHH-HhCCEEEEEC
Confidence 99999998 4799999994
No 115
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1e-25 Score=214.28 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=101.4
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCC-CcCcHHHHHHhhhc
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPK-FQSTVRHLLHQKIR 439 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~-~~~tv~~~~~~~~~ 439 (605)
+++|++.+| |+++|+||||||||||++++.+-....++ ..-.++++|+.... +..++.+.+.
T Consensus 1 ~vsl~i~~g-----ei~~l~G~nGsGKSTl~~~~~~~~~~~~~--------d~~~g~~~~~~~~~~~~~~~~~~~~---- 63 (171)
T 4gp7_A 1 SMKLTIPEL-----SLVVLIGSSGSGKSTFAKKHFKPTEVISS--------DFCRGLMSDDENDQTVTGAAFDVLH---- 63 (171)
T ss_dssp CEEEEEESS-----EEEEEECCTTSCHHHHHHHHSCGGGEEEH--------HHHHHHHCSSTTCGGGHHHHHHHHH----
T ss_pred CccccCCCC-----EEEEEECCCCCCHHHHHHHHccCCeEEcc--------HHHHHHhcCcccchhhHHHHHHHHH----
Confidence 467777777 78999999999999999986542211110 01125566653221 1112222111
Q ss_pred cCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH----------------HH
Q 040300 440 DSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE----------------QR 503 (605)
Q Consensus 440 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~----------------~~ 503 (605)
.........+.....+ ....+||||+|||+||+||+.+|++|+|||||++||+. ++
T Consensus 64 -------~~~~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~ 135 (171)
T 4gp7_A 64 -------YIVSKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHT 135 (171)
T ss_dssp -------HHHHHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHH
T ss_pred -------HHHHHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHH
Confidence 1111222234433333 33556999999999999999999999999999999999 66
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q 040300 504 IVAAKVIKRFILHAKKTAFVVEHDFIMATY 533 (605)
Q Consensus 504 ~~l~~~l~~l~~~~g~tiivvsHD~~~~~~ 533 (605)
..+.+.|+++.++ |.|+|+||||++++..
T Consensus 136 ~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 136 QQMKKSIKGLQRE-GFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHSTTHHHH-TCSEEEEECSHHHHHH
T ss_pred HHhhhhhhhHHhc-CCcEEEEeCCHHHhhh
Confidence 8889998888655 9999999999999976
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=1.2e-26 Score=228.05 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=92.1
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecccc------CcceeEeecCcCCCCC-cC--cHHHHHHhhhccCC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI------PEFNVSYKPQKISPKF-QS--TVRHLLHQKIRDSY 442 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~------~~~~i~y~~q~~~~~~-~~--tv~~~~~~~~~~~~ 442 (605)
.+||+++|+||||||||||+++|+|+ +|++|++..... ....++|+||+..... .. ++...+ .. .
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~----~~-~ 93 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDAL----RD-M 93 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHH----TT-T
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHH----HH-h
Confidence 45689999999999999999999999 999998742111 1235899998741111 00 111111 11 0
Q ss_pred CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 040300 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522 (605)
Q Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tii 522 (605)
.....+.++++. ++ ||||||+|||||+.+|++|||||||++ ++..+.++|+++ . .|.|||
T Consensus 94 ~~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii 153 (208)
T 3b85_A 94 VEPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV 153 (208)
T ss_dssp SCTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE
T ss_pred ccHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE
Confidence 112234445544 32 999999999999999999999999999 888999999987 4 589999
Q ss_pred EEecCHHHHHh
Q 040300 523 VVEHDFIMATY 533 (605)
Q Consensus 523 vvsHD~~~~~~ 533 (605)
||||++++..
T Consensus 154 -vtHd~~~~~~ 163 (208)
T 3b85_A 154 -VTGDITQVDL 163 (208)
T ss_dssp -EEEC------
T ss_pred -EECCHHHHhC
Confidence 9999987653
No 117
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1.9e-25 Score=212.48 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=67.2
Q ss_pred cCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHhhcCCc
Q 040300 204 LDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK----------------QRLKAAQVVRSLLRPNS 267 (605)
Q Consensus 204 l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~----------------~r~~~~~~i~~l~~~g~ 267 (605)
.+.....+ .....||||+||++||+|++.+|++|+|||||++||+. ++..+.+.|+++.++|.
T Consensus 72 ~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~ 150 (171)
T 4gp7_A 72 LGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF 150 (171)
T ss_dssp TTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred CCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence 45554444 34566999999999999999999999999999999999 66888889888877799
Q ss_pred EEEEEecCHhHHHhh
Q 040300 268 YVIVVEHDLSVLDYL 282 (605)
Q Consensus 268 tvivvsHdl~~l~~~ 282 (605)
|+|+||||++++..+
T Consensus 151 tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 151 RYVYILNSPEEVEEV 165 (171)
T ss_dssp SEEEEECSHHHHHHE
T ss_pred cEEEEeCCHHHhhhh
Confidence 999999999999763
No 118
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=4.3e-24 Score=230.41 Aligned_cols=71 Identities=27% Similarity=0.306 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 217 LSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
|||||+||++||++|+.+| ++||||||||+||+..+..+.+.|+++. +|.+||+||||++++. +||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~-~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAA-RAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHT-TCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHh-hcCeEEEE
Confidence 5999999999999999999 9999999999999999999999999998 5899999999998875 69999999
No 119
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5e-27 Score=256.46 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=119.7
Q ss_pred ceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCc-e-eeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 83 TTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-R-FNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 83 ~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G-~-i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++|+..+|.+ ++|++++|+|+||||||||+|+|+|+++|+.| + +....+....+
T Consensus 124 l~~~y~~vsl~i------~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i---------------- 181 (460)
T 2npi_A 124 LHFMLEKIRMSN------FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPI---------------- 181 (460)
T ss_dssp HHHHHHHHHHHS------SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCS----------------
T ss_pred hhehhhcCceEe------CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCe----------------
Confidence 344554334444 69999999999999999999999999999999 7 63211111000
Q ss_pred HHHHHHhhcccccccchhhhhchhhh-hc-----CchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHH--Hc
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQ-VL-----DQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVV--AV 232 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~-~l-----~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~a--L~ 232 (605)
.+.+|.....+.....++.+ .+ .......++.++++.+|+.+..+ +.+|||||+||++||+| |+
T Consensus 182 ------~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 182 ------FTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp ------SSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ------eeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhc
Confidence 11122211100000000100 00 00001223456788899988766 89999999999999999 99
Q ss_pred cCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHh------HHHhhcCE-----EEEEe
Q 040300 233 QNAEI----YMFDE-PSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLS------VLDYLSDF-----ICCLY 290 (605)
Q Consensus 233 ~~p~v----lllDE-Pts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~------~l~~~~D~-----i~vl~ 290 (605)
.+|++ ||||| ||++||+. +..+.++++++ +.|+|+|+||.. ++..+||+ |++|.
T Consensus 254 ~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 254 LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred cCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 99999 99999 99999998 65666666554 788999999987 77789999 99996
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=2.5e-23 Score=221.44 Aligned_cols=81 Identities=28% Similarity=0.382 Sum_probs=76.0
Q ss_pred hcccCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhc
Q 040300 210 IDRNVGDLSGGELQRFAIAVVAV------QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLS 283 (605)
Q Consensus 210 ~dr~v~~LSGGe~QRvaIA~aL~------~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~ 283 (605)
+++++.+|||||+||++||+||+ .+|++|||||||++||+..+..+.++|+++.+.|.|||+||||+++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 46899999999999999999999 7999999999999999999999999999998889999999999998 5679
Q ss_pred CEEEEEeC
Q 040300 284 DFICCLYG 291 (605)
Q Consensus 284 D~i~vl~g 291 (605)
|++++|.+
T Consensus 352 d~~~~l~~ 359 (365)
T 3qf7_A 352 DRKLRITG 359 (365)
T ss_dssp SCEEEEET
T ss_pred CEEEEEEC
Confidence 99999974
No 121
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1.4e-24 Score=208.12 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=99.1
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCC-eeeee-ccc--cCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHH
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPD-SVEDS-DVE--IPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDV 451 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~-~G~i~-~~~--~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~ 451 (605)
+++|+||||||||||+++|+|++... .|... ... .....++|++|+... .+.+.... .+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~------~~~~~~~~--~~--------- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEG------KKKIFSSK--FF--------- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTC------CEEEEEET--TC---------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcH------HHHHHHhh--cC---------
Confidence 58999999999999999999998532 22211 000 112457888886411 11110000 00
Q ss_pred HhhcCCchhhccCcCcCChhHHHHHHHHHH-----HccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 040300 452 MKPLLIEQLMDQEVVNLSGGELQRVALCLC-----LGKPADIYLIDE--PSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524 (605)
Q Consensus 452 l~~l~l~~~~~~~~~~LSGGe~QRvaiA~a-----L~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~l~~~~g~tiivv 524 (605)
.-....++++.+|||||+||++||+| |+.+|++||||| ||++||+..+..+.++|++ .+.|+|++
T Consensus 65 ----~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~ 136 (178)
T 1ye8_A 65 ----TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVAT 136 (178)
T ss_dssp ----CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEE
T ss_pred ----CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEE
Confidence 00135678899999999999999996 999999999999 9999999998888777654 47778888
Q ss_pred e---cCHHHHHhhcCE
Q 040300 525 E---HDFIMATYLADR 537 (605)
Q Consensus 525 s---HD~~~~~~~adr 537 (605)
+ ||+.++..+|+|
T Consensus 137 ~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 137 IPIRDVHPLVKEIRRL 152 (178)
T ss_dssp CCSSCCSHHHHHHHTC
T ss_pred EccCCCchHHHHHHhc
Confidence 8 599999999998
No 122
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=5.7e-23 Score=214.93 Aligned_cols=83 Identities=28% Similarity=0.339 Sum_probs=72.1
Q ss_pred hhccCcCcCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q 040300 460 LMDQEVVNLSGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535 (605)
Q Consensus 460 ~~~~~~~~LSGGe~QRvaiA~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~a 535 (605)
..++++.+|||||||||+||++|+ .+|++|||||||++||+..+..+.++|+++ . .+.|+|+|||+.+ +..+|
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~-~~~~vi~~tH~~~-~~~~~ 288 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-S-KHTQFIVITHNKI-VMEAA 288 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-T-TTSEEEEECCCTT-GGGGC
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCCeEEEEECCHH-HHhhC
Confidence 356778999999999999999997 689999999999999999999999999997 3 3789999999965 45689
Q ss_pred CEE--EEEeCCc
Q 040300 536 DRV--IVYEGQP 545 (605)
Q Consensus 536 drv--iv~~g~~ 545 (605)
|++ +++.++.
T Consensus 289 d~~~~v~~~~g~ 300 (322)
T 1e69_A 289 DLLHGVTMVNGV 300 (322)
T ss_dssp SEEEEEEESSSC
T ss_pred ceEEEEEEeCCE
Confidence 987 6676544
No 123
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=4.2e-25 Score=216.97 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=87.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccccc-ccc-hh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYV-DHI-PK 178 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~-~~~-~~ 178 (605)
.+|++++|+||||||||||+|+|+|+ +|+.|++... .........+ .. ..+.+|.. +.+ +.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~-~~~~~~~~~~-~~--------------ig~v~q~~~enl~~~ 82 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI-ILTRPAVEAG-EK--------------LGFLPGTLNEKIDPY 82 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE-EEEECSCCTT-CC--------------CCSSCC------CTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE-EecCCchhhh-cc--------------eEEecCCHHHHHHHH
Confidence 58999999999999999999999999 9999988421 0000000000 00 01111110 000 00
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~ 258 (605)
. ..+...+.......+++++++. ++ ||+||++|||||+.+|++||||||||+ .+..+.++
T Consensus 83 ~--~~~~~~~~~~~~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~ 142 (208)
T 3b85_A 83 L--RPLHDALRDMVEPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMF 142 (208)
T ss_dssp T--HHHHHHHTTTSCTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHH
T ss_pred H--HHHHHHHHHhccHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHH
Confidence 0 0000000000011234445544 33 999999999999999999999999999 77889999
Q ss_pred HHHhhcCCcEEEEEecCHhHHHh
Q 040300 259 VRSLLRPNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 259 i~~l~~~g~tvivvsHdl~~l~~ 281 (605)
|+++ ++|.||| ||||+++++.
T Consensus 143 l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 143 LTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HTTB-CTTCEEE-EEEC------
T ss_pred HHHh-cCCCEEE-EECCHHHHhC
Confidence 9998 6689999 9999987764
No 124
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.87 E-value=3.1e-25 Score=217.21 Aligned_cols=162 Identities=11% Similarity=-0.033 Sum_probs=112.4
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc---cCcceeEeecCcCCCCCcCcHHHHHHhh--hcc--
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE---IPEFNVSYKPQKISPKFQSTVRHLLHQK--IRD-- 440 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~---~~~~~i~y~~q~~~~~~~~tv~~~~~~~--~~~-- 440 (605)
++.+||+++|+||||||||||+|+|+|+++...+.+. ... .....++|++|+......+++.+++... ...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~ 95 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGL 95 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCch
Confidence 3444589999999999999999999999864433221 000 0123578888874332223333322100 000
Q ss_pred ---CCCC---HHHHHHH------HhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCC----CHHHHH
Q 040300 441 ---SYTH---PQFVSDV------MKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYL----DSEQRI 504 (605)
Q Consensus 441 ---~~~~---~~~~~~~------l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~L----D~~~~~ 504 (605)
.... ...+.+. ++.+++....++.+.+|| +|+.+|++++|||||+++ |+..+.
T Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~ 164 (207)
T 1znw_A 96 HRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQR 164 (207)
T ss_dssp EEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHH
T ss_pred hhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHH
Confidence 0001 1223333 556677777888888998 899999999999999998 788999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEe
Q 040300 505 VAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYE 542 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~ 542 (605)
.+.++++++..+.|.|+|+||||++++..+||||+++.
T Consensus 165 ~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 165 RLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999876568999999999999999999999984
No 125
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=1e-21 Score=205.37 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=71.6
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhc
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVVAV----QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLS 283 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~aL~----~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~ 283 (605)
+..++++.+|||||+||++||++|+ .+|++|||||||++||+..+..+.++|+++. .+.+||+|||+.+ +..+|
T Consensus 211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~-~~~~~ 288 (322)
T 1e69_A 211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI-VMEAA 288 (322)
T ss_dssp TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT-GGGGC
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH-HHhhC
Confidence 3467788999999999999999997 6899999999999999999999999999985 4889999999965 45689
Q ss_pred CEE--EEEeC
Q 040300 284 DFI--CCLYG 291 (605)
Q Consensus 284 D~i--~vl~g 291 (605)
|++ ++|.+
T Consensus 289 d~~~~v~~~~ 298 (322)
T 1e69_A 289 DLLHGVTMVN 298 (322)
T ss_dssp SEEEEEEESS
T ss_pred ceEEEEEEeC
Confidence 987 55543
No 126
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=8.7e-25 Score=235.10 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=128.6
Q ss_pred eeeeEEEEEeece---------------eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--cccCcceeEeecC
Q 040300 358 TQGNFKLKVVEGE---------------FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEIPEFNVSYKPQ 420 (605)
Q Consensus 358 ~l~~~~l~v~~G~---------------~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~~~~~i~y~~q 420 (605)
.+++++|++.+|+ ...+.+++|+||||||||||+|+|+|+.+|++|++.. .... +.+|++|
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t--~~~~v~q 115 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--MERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------CCCEEEE
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--eeEEecc
Confidence 4567777777774 1122389999999999999999999999999998741 1111 2378888
Q ss_pred cCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChh--HHHHHHHHHHHcc----------CCCE
Q 040300 421 KISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGG--ELQRVALCLCLGK----------PADI 488 (605)
Q Consensus 421 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGG--e~QRvaiA~aL~~----------~p~l 488 (605)
+. ...+.++.++..... . ...+.++++.+++.+. +..+. |||| |+||++||++|++ +|++
T Consensus 116 ~~-~~~~ltv~D~~g~~~--~---~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS--T---NFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp CS-SCTTEEEEECCCGGG--S---SCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred cc-ccCCeeehHhhcccc--h---HHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 73 223456555432111 1 1235678888988765 33344 9999 9999999999999 9999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEecCHHH--HHhhcCEEE
Q 040300 489 YLIDEPSAYLDSEQRIVAAKVIKRFIL----HA----KKTAFVVEHDFIM--ATYLADRVI 539 (605)
Q Consensus 489 llLDEPt~~LD~~~~~~l~~~l~~l~~----~~----g~tiivvsHD~~~--~~~~adrvi 539 (605)
++|||||+|||+..+..+++.|+++.. +. ..+++++||++.. +..++|++.
T Consensus 188 llLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 188 DITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999999999852 22 3578889999887 888899885
No 127
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.85 E-value=1.7e-22 Score=209.49 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=123.8
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cceeEeecCcCC-C
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EFNVSYKPQKIS-P 424 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~~i~y~~q~~~-~ 424 (605)
.++|++.+| ++++|+||||||||||++.|+|+++|++|++. +.+.. ...++|++|+.. .
T Consensus 92 ~l~~~~~~g-----~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 92 ELQLGFRKP-----AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp SCCCCSSSC-----EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccCCC-----cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 455555555 79999999999999999999999999999875 11111 125899999865 5
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~LD~~~ 502 (605)
.+..++.+++........ + ..+++.+|+.+..++.+.+|| +||++|||||+.+|+ +|+|| ||+|||+..
T Consensus 167 ~~~~~v~e~l~~~~~~~~-d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~ 237 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGY-D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 237 (302)
T ss_dssp CHHHHHHHHHHHHHHTTC-S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred CHHHHHHHHHHHHHHcCC-c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH
Confidence 555678887643211111 1 135677888877788899999 999999999999999 99999 999999975
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEec---------CHHHHHhhcCEEEEEeC
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEH---------DFIMATYLADRVIVYEG 543 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsH---------D~~~~~~~adrviv~~g 543 (605)
+ ++++.++.|.|+|++|| .+..+..+.+.|.++..
T Consensus 238 ~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 238 Q------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 281 (302)
T ss_dssp H------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred H------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeC
Confidence 5 34554446899999999 67778788889988873
No 128
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=2.2e-20 Score=196.70 Aligned_cols=81 Identities=31% Similarity=0.463 Sum_probs=72.4
Q ss_pred hhccCcCcCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q 040300 460 LMDQEVVNLSGGELQ------RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533 (605)
Q Consensus 460 ~~~~~~~~LSGGe~Q------RvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~ 533 (605)
..++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.++|+++.. .+.|||+||||.+ +..
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~~~ 318 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKD 318 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-HHH
Confidence 356789999999999 67788888999999999999999999999999999999854 4789999999965 567
Q ss_pred hcCEEEEEe
Q 040300 534 LADRVIVYE 542 (605)
Q Consensus 534 ~adrviv~~ 542 (605)
+|||+++++
T Consensus 319 ~~d~~~~l~ 327 (339)
T 3qkt_A 319 AADHVIRIS 327 (339)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 899999986
No 129
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=1.1e-20 Score=199.13 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=74.3
Q ss_pred hhhcccCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHh
Q 040300 208 QVIDRNVGDLSGGELQ------RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~Q------RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~ 281 (605)
...++++.+|||||+| |+++|++|+.+|++|||||||++||+..+..+.++|+++.+.+.+||+||||.+ +..
T Consensus 240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~ 318 (339)
T 3qkt_A 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKD 318 (339)
T ss_dssp TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGG
T ss_pred ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHH
Confidence 3457889999999999 677888888999999999999999999999999999999877899999999965 567
Q ss_pred hcCEEEEEeC
Q 040300 282 LSDFICCLYG 291 (605)
Q Consensus 282 ~~D~i~vl~g 291 (605)
+||++++|..
T Consensus 319 ~~d~~~~l~~ 328 (339)
T 3qkt_A 319 AADHVIRISL 328 (339)
T ss_dssp GCSEEEEEEE
T ss_pred hCCEEEEEEe
Confidence 8999999964
No 130
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.84 E-value=3.2e-22 Score=191.74 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=66.3
Q ss_pred hhhcccCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhhcCCcEEEEEe---cCHh
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVV-----AVQNAEIYMFDE--PSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE---HDLS 277 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~a-----L~~~p~vlllDE--Pts~LD~~~r~~~~~~i~~l~~~g~tvivvs---Hdl~ 277 (605)
...++++.+|||||+||++||+| ++.+|++||||| ||++||+..+..+.+++++ .+.|+|+++ ||+.
T Consensus 68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~ 144 (178)
T 1ye8_A 68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHP 144 (178)
T ss_dssp SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSH
T ss_pred ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCch
Confidence 35778899999999999999996 999999999999 9999999988887777764 467788888 5999
Q ss_pred HHHhhcCE
Q 040300 278 VLDYLSDF 285 (605)
Q Consensus 278 ~l~~~~D~ 285 (605)
+++.++++
T Consensus 145 ~~~~i~~r 152 (178)
T 1ye8_A 145 LVKEIRRL 152 (178)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99999998
No 131
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=2.3e-21 Score=204.98 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=123.9
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cceeEeecCcCC-C
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EFNVSYKPQKIS-P 424 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~~i~y~~q~~~-~ 424 (605)
.++|++.+| ++++|+||||||||||++.|+|+++|++|++. +.+.. ...++|++|+.. .
T Consensus 149 ~l~l~~~~g-----~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~ 223 (359)
T 2og2_A 149 ELQLGFRKP-----AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 223 (359)
T ss_dssp SCCCCSSSS-----EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSC
T ss_pred CcceecCCC-----eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccccc
Confidence 345555555 79999999999999999999999999998875 11111 125899999865 5
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~LD~~~ 502 (605)
.+..++.+++........ + ..+++.+|+.+..++.+.+|| +||++|||+|+.+|+ +|+|| ||+|||+..
T Consensus 224 ~p~~tv~e~l~~~~~~~~-d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 224 KAATVLSKAVKRGKEEGY-D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp CHHHHHHHHHHHHHHTTC-S----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred ChhhhHHHHHHHHHhCCC-H----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 555678777643211111 1 135677888877788899999 999999999999999 99999 999999976
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEec---------CHHHHHhhcCEEEEEe
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEH---------DFIMATYLADRVIVYE 542 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsH---------D~~~~~~~adrviv~~ 542 (605)
+. +++.+..+.|+|++|| .+..+..+...|..+.
T Consensus 295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG 337 (359)
T ss_dssp HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE
T ss_pred HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe
Confidence 53 4454446899999999 5677777888998886
No 132
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=1.2e-22 Score=218.56 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=110.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhchh
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNV 184 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v 184 (605)
++||+|+||||||||+|+|+|+++|+.|++..... .. . ..+. .+|. ...+.. ++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~--~~-t-~~~~------------------v~q~-~~~~~l---tv 124 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV--EV-T-MERH------------------PYKH-PNIPNV---VF 124 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--------CCCE------------------EEEC-SSCTTE---EE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe--ec-c-eeEE------------------eccc-cccCCe---ee
Confidence 99999999999999999999999999998752210 00 0 0011 1111 000000 11
Q ss_pred hhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChH--HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHH
Q 040300 185 GQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGG--ELQRFAIAVVAVQ----------NAEIYMFDEPSSYLDVKQR 252 (605)
Q Consensus 185 ~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGG--e~QRvaIA~aL~~----------~p~vlllDEPts~LD~~~r 252 (605)
.+...-...+.++.++++.+++.+.. ..+. |||| |+||++||++|++ +|++++|||||++||+..+
T Consensus 125 ~D~~g~~~~~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~ 202 (413)
T 1tq4_A 125 WDLPGIGSTNFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDK 202 (413)
T ss_dssp EECCCGGGSSCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCH
T ss_pred hHhhcccchHHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHH
Confidence 11110000123467888999987653 3334 9999 9999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhh-----cC----CcEEEEEecCHhH--HHhhcCEEE
Q 040300 253 LKAAQVVRSLL-----RP----NSYVIVVEHDLSV--LDYLSDFIC 287 (605)
Q Consensus 253 ~~~~~~i~~l~-----~~----g~tvivvsHdl~~--l~~~~D~i~ 287 (605)
.++.+.|+++. +. ..+|++++|++.. ++.++|+|.
T Consensus 203 ~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 203 EKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999999984 22 3568889999998 889999884
No 133
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=2.4e-22 Score=196.61 Aligned_cols=172 Identities=10% Similarity=-0.064 Sum_probs=108.0
Q ss_pred CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCce--eeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccc
Q 040300 99 VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR--FNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHI 176 (605)
Q Consensus 99 ~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~--i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~ 176 (605)
.+.+|++++|+||||||||||+|+|+|++++..+. +...+..... ..-.|..+|+.. .+ ..+... +.+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~-~~~i~~~~q~~~--~~-~~~~~~---~~l~~- 87 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGE-VDGVDYHFIDPT--RF-QQLIDQ---GELLE- 87 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTC-CBTTTBEECCHH--HH-HHHHHT---TCEEE-
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccc-cCCCeeEecCHH--HH-HHHHhc---CCcee-
Confidence 34799999999999999999999999998532221 1110000000 000111122211 01 111110 00000
Q ss_pred hhhhhchhh-hhcCchHHHHHHHHH------HhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC--
Q 040300 177 PKAVQGNVG-QVLDQKDERDMKADL------CTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYL-- 247 (605)
Q Consensus 177 ~~~~~~~v~-~~l~~~~~~~~~~~~------l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~L-- 247 (605)
...+.++.. .-......++++.+. ++.+|+..+.++.+.+|| +|+.+|++++|||||++|
T Consensus 88 ~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~ 156 (207)
T 1znw_A 88 WAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGT 156 (207)
T ss_dssp EEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSC
T ss_pred ehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCC
Confidence 000000000 001122334455555 677788788899999999 999999999999999998
Q ss_pred --CHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 248 --DVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 248 --D~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
|+..+..+.++++++.+ .|.|+|+||||++++..+||+|++|
T Consensus 157 ~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 157 ETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 78899999999999975 4899999999999999999999998
No 134
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=1.7e-19 Score=167.44 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=73.7
Q ss_pred hhccCcCcCChhHHHHHHHH------HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q 040300 460 LMDQEVVNLSGGELQRVALC------LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATY 533 (605)
Q Consensus 460 ~~~~~~~~LSGGe~QRvaiA------~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~ 533 (605)
..++++.+|||||||||+|| |||+.+|++|||||||+|||+.++..+.+.|+++.. .|.|||+||||++ +..
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~ 127 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKD 127 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGG
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChHH-HHH
Confidence 36789999999999999876 899999999999999999999999999999999854 4899999999984 567
Q ss_pred hcCEEEEEe
Q 040300 534 LADRVIVYE 542 (605)
Q Consensus 534 ~adrviv~~ 542 (605)
+||++++++
T Consensus 128 ~~d~ii~l~ 136 (148)
T 1f2t_B 128 AADHVIRIS 136 (148)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 999999995
No 135
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=2.2e-19 Score=166.70 Aligned_cols=82 Identities=28% Similarity=0.402 Sum_probs=75.4
Q ss_pred hhcccCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhh
Q 040300 209 VIDRNVGDLSGGELQRFAIA------VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL 282 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA------~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~ 282 (605)
..++++.+|||||+||++|| +||+.+|+++||||||++||+..+..+.+.|+++.+.|.|||+||||++ +..+
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~ 128 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA 128 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHh
Confidence 46899999999999999876 8999999999999999999999999999999999777899999999994 6679
Q ss_pred cCEEEEEeC
Q 040300 283 SDFICCLYG 291 (605)
Q Consensus 283 ~D~i~vl~g 291 (605)
||++++|..
T Consensus 129 ~d~ii~l~~ 137 (148)
T 1f2t_B 129 ADHVIRISL 137 (148)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEEc
Confidence 999999953
No 136
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=5.9e-21 Score=194.84 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=92.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----CcceeEeecCcCCCCCcCcHHHHHHhhhcc-CCCCHHHH
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----PEFNVSYKPQKISPKFQSTVRHLLHQKIRD-SYTHPQFV 448 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~-~~~~~~~~ 448 (605)
.++|+||||||||||+++|+|+..|++|++. +... ....++|++|+......+||.+++...... .......+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 5899999999999999999999999999864 1111 124699999987665566777654321111 01111222
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~ 528 (605)
.+.+. ..+.+..+.+|||||+|||++|||++. +|+||||+++||+.. .++++++.. . .++|+|.|..
T Consensus 84 ~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~ 150 (270)
T 3sop_A 84 EKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKA 150 (270)
T ss_dssp HHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTG
T ss_pred HHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEecc
Confidence 33332 456677889999999999999999886 999999999999976 345666533 3 7888888865
Q ss_pred H
Q 040300 529 I 529 (605)
Q Consensus 529 ~ 529 (605)
+
T Consensus 151 D 151 (270)
T 3sop_A 151 D 151 (270)
T ss_dssp G
T ss_pred c
Confidence 4
No 137
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.78 E-value=8.2e-23 Score=201.98 Aligned_cols=171 Identities=14% Similarity=0.090 Sum_probs=107.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-ccc--------CcceeEeecCcCCCCCcC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-VEI--------PEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-~~~--------~~~~i~y~~q~~~~~~~~ 428 (605)
.+++++|++.+| ++++|+||||||||||+++|+|++ | |.+.. ... ....++|++|+.......
T Consensus 12 ~l~~isl~i~~G-----~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 12 SGLVPRGSMNNI-----YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ----------CC-----CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccCCceecCCC-----CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 578899998888 689999999999999999999998 6 65531 110 013467777753211110
Q ss_pred cH-HHHHHh-hhcc-CC-CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHH-----HHHHccCCCEEEEecCCCCCC
Q 040300 429 TV-RHLLHQ-KIRD-SY-THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVAL-----CLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 429 tv-~~~~~~-~~~~-~~-~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvai-----A~aL~~~p~lllLDEPt~~LD 499 (605)
+. .+++.. .+.. .+ .....+.++++...+. +++ .+|||||+||++| |++|+.+|++++|||||+++|
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hhccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 00 000000 0000 01 1123455666654432 222 6799999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc------CCcEEEEEecCHHHHHhhcCEEEE
Q 040300 500 SEQRIVAAKVIKRFILH------AKKTAFVVEHDFIMATYLADRVIV 540 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~------~g~tiivvsHD~~~~~~~adrviv 540 (605)
.++...+.+.|.++..+ ...+.|+|+||++++...+++++.
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 98888888888775432 356778888888888877776654
No 138
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=5e-21 Score=199.26 Aligned_cols=153 Identities=11% Similarity=0.009 Sum_probs=111.5
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccC---CCCHHH
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDS---YTHPQF 447 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~---~~~~~~ 447 (605)
+.+|+++||+||||||||||+++|+|+++|+.|. ..++|++|+..... .|+.+++....... ..+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------~~v~~v~qd~~~~~-~t~~e~~~~~~~~g~~~~~d~~~ 157 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH--------PRVDLVTTDGFLYP-NAELQRRNLMHRKGFPESYNRRA 157 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC--------CCEEEEEGGGGBCC-HHHHHHTTCTTCTTSGGGBCHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC--------CeEEEEecCccCCc-ccHHHHHHHHHhcCCChHHHHHH
Confidence 4567899999999999999999999999997653 35899999865433 38887753211001 112345
Q ss_pred HHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q 040300 448 VSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHD 527 (605)
Q Consensus 448 ~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD 527 (605)
+.++++.++ ....+.++.+|||||+|||++|++++.+|+|||||||+..+|+.. ..+.++ .+ ..|+|+||
T Consensus 158 ~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~---~D-~~I~V~a~ 227 (312)
T 3aez_A 158 LMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDL---FD-FSLYVDAR 227 (312)
T ss_dssp HHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGG---CS-EEEEEEEC
T ss_pred HHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHh---cC-cEEEEECC
Confidence 677888887 555567889999999999999999999999999999999998522 112222 23 45788888
Q ss_pred HHHHH-hhcCEEEEEe
Q 040300 528 FIMAT-YLADRVIVYE 542 (605)
Q Consensus 528 ~~~~~-~~adrviv~~ 542 (605)
.+... .+.+|.+.+.
T Consensus 228 ~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 228 IEDIEQWYVSRFLAMR 243 (312)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 86643 3456655543
No 139
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.78 E-value=4.3e-19 Score=182.82 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=107.0
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCee-eeec--cccCc----ceeEeecCcCCCCCcCcH
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV-EDSD--VEIPE----FNVSYKPQKISPKFQSTV 430 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G-~i~~--~~~~~----~~i~y~~q~~~~~~~~tv 430 (605)
.++++++. +.+|++++|+||||+|||||++.|+|.+.|++| .+.. ...+. .++.+..+.... ++
T Consensus 24 ~Ld~i~~~-----l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~ 94 (296)
T 1cr0_A 24 GINDKTLG-----ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQ 94 (296)
T ss_dssp THHHHHCS-----BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GG
T ss_pred HHHHHhcC-----CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hh
Confidence 35555544 455589999999999999999999999988876 3320 00000 011111111110 11
Q ss_pred HHHHHhh-hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhH-HHHHHHHHHHccCCCEEEEecCCC---C---CCH-H
Q 040300 431 RHLLHQK-IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGE-LQRVALCLCLGKPADIYLIDEPSA---Y---LDS-E 501 (605)
Q Consensus 431 ~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe-~QRvaiA~aL~~~p~lllLDEPt~---~---LD~-~ 501 (605)
.+.+... ... ......+.++++..++. ....+.++|.+| +||+. |+++..+|+++||||||+ + +|. .
T Consensus 95 ~~~l~~~~~~~-~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~ 170 (296)
T 1cr0_A 95 SDSLKREIIEN-GKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERK 170 (296)
T ss_dssp CHHHHHHHHHH-THHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CH
T ss_pred ccccccCCCCH-HHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHH
Confidence 0111000 000 00011223333333332 233456789999 55666 999999999999999999 5 455 6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCH--H--------------------HHHhhcCEEEEEeCC
Q 040300 502 QRIVAAKVIKRFILHAKKTAFVVEHDF--I--------------------MATYLADRVIVYEGQ 544 (605)
Q Consensus 502 ~~~~l~~~l~~l~~~~g~tiivvsHD~--~--------------------~~~~~adrviv~~g~ 544 (605)
....+++.|++++++.+.|||++||+. + .+.++||+|++|..+
T Consensus 171 ~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 171 MIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 778899999998777799999999994 5 788899999999743
No 140
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=4.6e-20 Score=218.36 Aligned_cols=155 Identities=18% Similarity=0.163 Sum_probs=111.7
Q ss_pred eeeeeEEEEEee--ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeE-eecCcCCCCCcCcHHHH
Q 040300 357 KTQGNFKLKVVE--GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVS-YKPQKISPKFQSTVRHL 433 (605)
Q Consensus 357 ~~l~~~~l~v~~--G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~-y~~q~~~~~~~~tv~~~ 433 (605)
.++++++|++.+ .+...|++++|+||||||||||||+| |++.+. ..+| |+||+.. ..++.+.
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-----------aqiG~~Vpq~~~---~l~v~d~ 834 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-----------AQMGCYVPAEVC---RLTPIDR 834 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-----------HTTTCCEESSEE---EECCCSB
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-----------hheeEEeccCcC---CCCHHHH
Confidence 457788887765 11223589999999999999999999 987642 1244 8898642 2233222
Q ss_pred HHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH-HHHHHHHHH
Q 040300 434 LHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQR-IVAAKVIKR 512 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~-~~l~~~l~~ 512 (605)
+ +..+|+.+...+..+++|+++++ +++|++++.+|+|+||||||+|+|+... ..++.+|+.
T Consensus 835 I-----------------~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~ 896 (1022)
T 2o8b_B 835 V-----------------FTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE 896 (1022)
T ss_dssp E-----------------EEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred H-----------------HHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence 1 22344444445566788887665 9999999999999999999999999885 557889998
Q ss_pred HHhcCCcEEEEEecCHHHHHhhcCEEEEEeCC
Q 040300 513 FILHAKKTAFVVEHDFIMATYLADRVIVYEGQ 544 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~~~~adrviv~~g~ 544 (605)
+.++.|.++|++|||++++..++|++.++.|.
T Consensus 897 L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~ 928 (1022)
T 2o8b_B 897 LAETIKCRTLFSTHYHSLVEDYSQNVAVRLGH 928 (1022)
T ss_dssp HHHTSCCEEEEECCCHHHHHHTSSCSSEEEEE
T ss_pred HHhcCCCEEEEEeCCHHHHHHhCCcceeecCe
Confidence 86555899999999999999999999887654
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=1.4e-19 Score=201.59 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=114.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCce-eeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-FNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~ 178 (605)
+.+|++++|+|+||||||||++.++|...|+ |. +. ++.+.+.. ..+.. ... .+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi----------~~~~ee~~---~~l~~-~~~------~~----- 331 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN-KERAI----------LFAYEESR---AQLLR-NAY------SW----- 331 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEE----------EEESSSCH---HHHHH-HHH------TT-----
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEE----------EEEEeCCH---HHHHH-HHH------Hc-----
Confidence 4699999999999999999999999998885 53 21 12221110 00100 000 00
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK-----QRL 253 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~-----~r~ 253 (605)
+ +. +++ +..+|+..+.++.+.+|||||+||+++|+++..+|+++|+| ||++||.. .+.
T Consensus 332 ---g-----~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 332 ---G-----MD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---S-----CC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---C-----CC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 0 00 111 22456777788899999999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHhhcCCcEEEEEecCH----------hHHHhhcCEEEEEe
Q 040300 254 KAAQVVRSLLRPNSYVIVVEHDL----------SVLDYLSDFICCLY 290 (605)
Q Consensus 254 ~~~~~i~~l~~~g~tvivvsHdl----------~~l~~~~D~i~vl~ 290 (605)
.+.++++.+++.|.|||+|+|+. .++.++||+|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~ 441 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 441 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEE
Confidence 99999999988899999999999 88889999999995
No 142
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=1.3e-20 Score=195.25 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=109.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH--HHH--HHHHHHHhhcccccc-
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF--TRI--LEDNLKAIIKPQYVD- 174 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~--~~~--~~~~~~~~~~~q~~~- 174 (605)
+.+|++++|+|+|||||||+++.|+|.++|+.|++. +.|.+..... .++ +.......+.+|...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~-----------l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-----------MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-----------EECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE-----------EEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 468999999999999999999999999999999874 1222211110 000 001111222233222
Q ss_pred cchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHH
Q 040300 175 HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQR 252 (605)
Q Consensus 175 ~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r 252 (605)
..|.. ++.+.+...........+++.+|+.+..++.+.+|| +||++||+||+.+|+ +|+|| ||++||+..+
T Consensus 166 ~~~~~---~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~ 238 (302)
T 3b9q_A 166 AKAAT---VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 238 (302)
T ss_dssp CCHHH---HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred cCHHH---HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH
Confidence 22211 122211100000001135677888888889999999 999999999999999 99999 9999998754
Q ss_pred HHHHHHHHHhhc-CCcEEEEEec---------CHhHHHhhcCEEEEEe
Q 040300 253 LKAAQVVRSLLR-PNSYVIVVEH---------DLSVLDYLSDFICCLY 290 (605)
Q Consensus 253 ~~~~~~i~~l~~-~g~tvivvsH---------dl~~l~~~~D~i~vl~ 290 (605)
++++.+ .|.|+|++|| .++.+....+.|..+.
T Consensus 239 ------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~ 280 (302)
T 3b9q_A 239 ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG 280 (302)
T ss_dssp ------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEE
T ss_pred ------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEe
Confidence 244443 4899999999 5667777777887774
No 143
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.75 E-value=4.5e-22 Score=205.83 Aligned_cols=156 Identities=9% Similarity=0.043 Sum_probs=112.0
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQS 428 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~ 428 (605)
++.|+ ...+++++|++.+| |+++|+||||||||||+++|+|++ +|+| ++|++|... .+..
T Consensus 108 s~~y~--~~vL~~vsl~i~~G-----e~vaIvGpsGsGKSTLl~lL~gl~---~G~I---------~~~v~q~~~-lf~~ 167 (305)
T 2v9p_A 108 ELITF--INALKLWLKGIPKK-----NCLAFIGPPNTGKSMLCNSLIHFL---GGSV---------LSFANHKSH-FWLA 167 (305)
T ss_dssp CHHHH--HHHHHHHHHTCTTC-----SEEEEECSSSSSHHHHHHHHHHHH---TCEE---------ECGGGTTSG-GGGG
T ss_pred EEEcC--hhhhccceEEecCC-----CEEEEECCCCCcHHHHHHHHhhhc---CceE---------EEEecCccc-cccc
Confidence 56665 23578888887777 789999999999999999999998 6876 467787643 3445
Q ss_pred cHHH-HHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040300 429 TVRH-LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507 (605)
Q Consensus 429 tv~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~ 507 (605)
|+++ ++... .. . . ..+.+.++.+ +...++ ...|||||||| ||||+++|+||| |++||+.++..+.
T Consensus 168 ti~~~ni~~~-~~-~-~-~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 168 SLADTRAALV-DD-A-T-HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp GGTTCSCEEE-EE-E-C-HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred cHHHHhhccC-cc-c-c-HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 6654 43211 10 1 1 1334455553 444444 78999999999 999999999999 9999998887664
Q ss_pred HHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeCCcceeeecCChhhh
Q 040300 508 KVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 508 ~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
. +||++..+ ..|||| +|+++.. ...++++++
T Consensus 234 ~---------------ltH~~~~~-~~aD~i-vl~~G~i--v~~g~~~el 264 (305)
T 2v9p_A 234 Y---------------LHSRVQTF-RFEQPC-TDESGEQ--PFNITDADW 264 (305)
T ss_dssp G---------------GTTTEEEE-ECCCCC-CCC---C--CCCCCHHHH
T ss_pred H---------------HhCCHHHH-HhCCEE-EEeCCEE--EEeCCHHHH
Confidence 1 28988765 579999 9985443 356888887
No 144
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.75 E-value=4.2e-18 Score=175.42 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=104.6
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCc-eeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccc--cc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-RFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVD--HI 176 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G-~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~--~~ 176 (605)
+.+|++++|+|+||+|||||++.|+|.+.|+.| .+.. +.+ +... ..+. ..+... .+... ..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~----------~~~-e~~~--~~~~-~r~~~~--~~~~~~~~~ 95 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL----------AML-EESV--EETA-EDLIGL--HNRVRLRQS 95 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE----------EES-SSCH--HHHH-HHHHHH--HTTCCGGGC
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE----------EeC-cCCH--HHHH-HHHHHH--HcCCChhhc
Confidence 479999999999999999999999999998877 4420 111 1000 0000 011000 00000 00
Q ss_pred hhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH
Q 040300 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE-LQRFAIAVVAVQNAEIYMFDEPSS---Y---LDV 249 (605)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe-~QRvaIA~aL~~~p~vlllDEPts---~---LD~ 249 (605)
+.. .... +...+..+.+.++++..++. ++..+.++|.+| +||+. |+++..+|+++|+||||+ + +|.
T Consensus 96 ~~l---~~~~-~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~ 168 (296)
T 1cr0_A 96 DSL---KREI-IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDE 168 (296)
T ss_dssp HHH---HHHH-HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------
T ss_pred ccc---ccCC-CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCH
Confidence 000 0000 11112223344454433332 333456799999 55555 999999999999999999 4 455
Q ss_pred -HHHHHHHHHHHHhhcC-CcEEEEEecCH--h--------------------HHHhhcCEEEEEeC
Q 040300 250 -KQRLKAAQVVRSLLRP-NSYVIVVEHDL--S--------------------VLDYLSDFICCLYG 291 (605)
Q Consensus 250 -~~r~~~~~~i~~l~~~-g~tvivvsHdl--~--------------------~l~~~~D~i~vl~g 291 (605)
.+...+.+.|++++++ |.+||+++|+. + .+..+||+|++|+.
T Consensus 169 ~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~ 234 (296)
T 1cr0_A 169 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec
Confidence 6667888899998765 99999999994 5 78889999999964
No 145
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.74 E-value=2.3e-20 Score=186.21 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=92.4
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHHH--cCCCCCeeeee-ccccCc-------ceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRMLA--GLLKPDSVEDS-DVEIPE-------FNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L~--Gl~~p~~G~i~-~~~~~~-------~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
.|.+.+||+++|+||||||||||+++|+ |+.++..+.+. ...... ..++|.+|+.......++.+.+
T Consensus 24 ~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--- 100 (251)
T 2ehv_A 24 EGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGV--- 100 (251)
T ss_dssp TTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----
T ss_pred cCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcc---
Confidence 4567888999999999999999999999 66444443321 000000 0122222211000000000000
Q ss_pred hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC-----HHHHHHHHHHHHH
Q 040300 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD-----SEQRIVAAKVIKR 512 (605)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD-----~~~~~~l~~~l~~ 512 (605)
.... .... ..........+-++.++...+..-..+|++++|||||++|| +..+..+.++++.
T Consensus 101 -----~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~ 167 (251)
T 2ehv_A 101 -----SSVV---GLPS-----EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTI 167 (251)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHH
T ss_pred -----cccc---cccc-----ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 0000 0000 00011122334556555555555578999999999999998 7777779999998
Q ss_pred HHhcCCcEEEEEecCHHHH---------Hhhc-CEEEEEeC
Q 040300 513 FILHAKKTAFVVEHDFIMA---------TYLA-DRVIVYEG 543 (605)
Q Consensus 513 l~~~~g~tiivvsHD~~~~---------~~~a-drviv~~g 543 (605)
+. +.|.|||+|||++.++ ..+| |+|++|+.
T Consensus 168 l~-~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 168 LL-EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HH-HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HH-HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 75 4599999999999998 6788 99999964
No 146
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=3.2e-19 Score=187.08 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=94.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
.+++++|.+.+| ++++|+||||||||||+++|+|+++|++|.+.-..... +. .++ .. ..
T Consensus 160 ~l~~l~~~i~~g-----~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~-~~~-----~~--------~~ 218 (330)
T 2pt7_A 160 AISAIKDGIAIG-----KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IV-FKH-----HK--------NY 218 (330)
T ss_dssp HHHHHHHHHHHT-----CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CC-CSS-----CS--------SE
T ss_pred HHhhhhhhccCC-----CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cc-ccc-----ch--------hE
Confidence 456777777777 68999999999999999999999999999864111100 00 000 00 00
Q ss_pred hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Q 040300 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA 517 (605)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 517 (605)
.. + .. . |||+||++||+||.++|++|||||||+. ++.++|+.+. ..
T Consensus 219 i~--~------------------~~----g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g 264 (330)
T 2pt7_A 219 TQ--L------------------FF----G--GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SG 264 (330)
T ss_dssp EE--E------------------EC----B--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TT
T ss_pred EE--E------------------Ee----C--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cC
Confidence 00 0 00 0 9999999999999999999999999982 3566777764 32
Q ss_pred CcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 518 KKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 518 g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
+.|+|+++|+.. +...|||+++|..
T Consensus 265 ~~tvi~t~H~~~-~~~~~dri~~l~~ 289 (330)
T 2pt7_A 265 HKGTLTTLHAGS-SEEAFIRLANMSS 289 (330)
T ss_dssp CCCEEEEEECSS-HHHHHHHHHHHHH
T ss_pred CCEEEEEEcccH-HHHHhhhheehhc
Confidence 458999999988 6678999999873
No 147
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=1.1e-19 Score=191.98 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=109.1
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhH--HHH--HHHHHHHhhcccccc-
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYF--TRI--LEDNLKAIIKPQYVD- 174 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~--~~~--~~~~~~~~~~~q~~~- 174 (605)
+.+|++++|+|+||||||||++.|+|.++|+.|++. +.|.+..... .++ +.......+.+|...
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~-----------l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-----------MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-----------EECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE-----------EecccccccchhHHHHHHHHhcCeEEEEecccc
Confidence 468999999999999999999999999999999874 2222211100 000 011111222233222
Q ss_pred cchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHH
Q 040300 175 HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQR 252 (605)
Q Consensus 175 ~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r 252 (605)
..|.. ++.+.+...........+++.+|+.+..++.+.+|| +||++||+||+.+|+ +|+|| ||++||+..+
T Consensus 223 ~~p~~---tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~ 295 (359)
T 2og2_A 223 AKAAT---VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 295 (359)
T ss_dssp CCHHH---HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred cChhh---hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH
Confidence 22211 122211100000000135667888888889999999 999999999999999 99999 9999998754
Q ss_pred HHHHHHHHHhhc-CCcEEEEEec---------CHhHHHhhcCEEEEEe
Q 040300 253 LKAAQVVRSLLR-PNSYVIVVEH---------DLSVLDYLSDFICCLY 290 (605)
Q Consensus 253 ~~~~~~i~~l~~-~g~tvivvsH---------dl~~l~~~~D~i~vl~ 290 (605)
++++.+ .+.|+|++|| .++.+......|..+.
T Consensus 296 ------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 296 ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG 337 (359)
T ss_dssp ------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE
T ss_pred ------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe
Confidence 234443 4899999999 4666666777777773
No 148
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.73 E-value=1.8e-20 Score=183.14 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=120.5
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCC--CcCcHHHHHHhhhcc-CCCCHHHH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPK--FQSTVRHLLHQKIRD-SYTHPQFV 448 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~--~~~tv~~~~~~~~~~-~~~~~~~~ 448 (605)
.+|++++|+||||||||||+++|+|++.| .++|++|+.... ...++.+........ ...+....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE-------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 35689999999999999999999998765 367888875432 235676654321110 11234456
Q ss_pred HHHHhhcCCchhhccCcCcCChhH----HHHHHHHHHHccCCCEEEEecCCCC-------CCHHHHHHHHHHHHHHHhcC
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGE----LQRVALCLCLGKPADIYLIDEPSAY-------LDSEQRIVAAKVIKRFILHA 517 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe----~QRvaiA~aL~~~p~lllLDEPt~~-------LD~~~~~~l~~~l~~l~~~~ 517 (605)
.++++.+++.+..+.++.++|+|| +||+++|++++.+|.++++||||++ ||+.....+.+.+++...+.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 71 LEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 778888888877888999999996 4788999999999999999999999 99999999999998865556
Q ss_pred CcEEEEEecCHHH-H-----------HhhcCEEEEEeC
Q 040300 518 KKTAFVVEHDFIM-A-----------TYLADRVIVYEG 543 (605)
Q Consensus 518 g~tiivvsHD~~~-~-----------~~~adrviv~~g 543 (605)
|.|++.++|++.. + ...||.|+.-.+
T Consensus 151 g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 151 GRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred CCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 8999999998532 1 145777765443
No 149
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.73 E-value=1.9e-18 Score=201.74 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=96.7
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
++++++|++.+| ++++|+||||||||||||+++++.-... .-+++|+... ...+
T Consensus 662 V~ndvsl~~~~g-----~i~~ItGPNGaGKSTlLr~i~~i~~~aq-----------~g~~vpa~~~---~i~~------- 715 (918)
T 3thx_B 662 VPNNTDLSEDSE-----RVMIITGPNMGGKSSYIKQVALITIMAQ-----------IGSYVPAEEA---TIGI------- 715 (918)
T ss_dssp CCEEEEECTTSC-----CEEEEESCCCHHHHHHHHHHHHHHHHHH-----------HTCCBSSSEE---EEEC-------
T ss_pred ecccccccCCCC-----eEEEEECCCCCchHHHHHHHHHHHHHhh-----------cCccccchhh---hhhH-------
Confidence 456778877666 7899999999999999999986431110 0012222100 0000
Q ss_pred hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH-HHHHHHHhc
Q 040300 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA-KVIKRFILH 516 (605)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~ 516 (605)
+..++..+++.+...+..+++|+|++|++.|+++ +.+|+|+||||||+|||+..+..+. .+++.+.++
T Consensus 716 ----------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~ 784 (918)
T 3thx_B 716 ----------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD 784 (918)
T ss_dssp ----------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0123444555556667789999999999999999 8999999999999999999999887 777777655
Q ss_pred CCcEEEEEecCHHHHHhhcCE
Q 040300 517 AKKTAFVVEHDFIMATYLADR 537 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adr 537 (605)
.|.|+|++|||++++. +||+
T Consensus 785 ~g~tvl~vTH~~el~~-l~~~ 804 (918)
T 3thx_B 785 VKSLTLFVTHYPPVCE-LEKN 804 (918)
T ss_dssp TCCEEEEECSCGGGGG-HHHH
T ss_pred cCCeEEEEeCcHHHHH-HHhh
Confidence 6999999999987763 4554
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.72 E-value=1.7e-18 Score=170.35 Aligned_cols=156 Identities=17% Similarity=0.187 Sum_probs=90.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|.+.+||+++|+||||||||||+++|+|...+..+.+. . ...+-|+...... ....+...+. .. .....
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~---~-~~~~i~~~~~~~~-~~~~i~~~~~-~~---~~~~~-- 88 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG---L-NGSVIWIDTENTF-RPERIREIAQ-NR---GLDPD-- 88 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---C-SCEEEEEESSSCC-CHHHHHHHHH-HT---TSCHH--
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCC---C-CCEEEEEECCCCC-CHHHHHHHHH-Hc---CCCHH--
Confidence 56788899999999999999999999996655433210 0 1122333322110 0001111111 10 01111
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHH-HHHHHHHcc-------CCCEEEEecCCCCCCHH--------H----HHHHHH
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQR-VALCLCLGK-------PADIYLIDEPSAYLDSE--------Q----RIVAAK 508 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QR-vaiA~aL~~-------~p~lllLDEPt~~LD~~--------~----~~~l~~ 508 (605)
.+.+.+.+ ...++++++++ +..++.++. +|++++|||||++||+. + ...+++
T Consensus 89 -~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~ 160 (231)
T 4a74_A 89 -EVLKHIYV-------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 160 (231)
T ss_dssp -HHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHH
T ss_pred -HHhhcEEE-------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHH
Confidence 22222211 22344444433 455555444 99999999999999983 2 236777
Q ss_pred HHHHHHhcCCcEEEEEec----CHHHHHhhcCEEEEEeC
Q 040300 509 VIKRFILHAKKTAFVVEH----DFIMATYLADRVIVYEG 543 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsH----D~~~~~~~adrviv~~g 543 (605)
.|.++.++.|.|||+||| +-..+.++||++++++.
T Consensus 161 ~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 161 DLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 788877667999999999 55558899999999984
No 151
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.71 E-value=5.1e-18 Score=169.15 Aligned_cols=75 Identities=17% Similarity=0.063 Sum_probs=59.9
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHhhcCCcEEEEEecCHhHH---------Hhh
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLD-----VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL---------DYL 282 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD-----~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l---------~~~ 282 (605)
.+-++.+....+..-..+|++++|||||++|| +..+..+.++++.+++.|+|||+|||+++.+ ..+
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34556555555555678999999999999998 7777779999999987799999999999998 678
Q ss_pred c-CEEEEEeC
Q 040300 283 S-DFICCLYG 291 (605)
Q Consensus 283 ~-D~i~vl~g 291 (605)
| |+|++|+.
T Consensus 198 ~aD~vi~l~~ 207 (251)
T 2ehv_A 198 IARGVIVLDL 207 (251)
T ss_dssp GCSEEEEEEE
T ss_pred eeeEEEEEee
Confidence 8 99999964
No 152
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.71 E-value=6.2e-18 Score=198.00 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHH--------HcCCCCCeeeeeccccCcceeEeecCcCCCCCcCc
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRML--------AGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQST 429 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L--------~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~t 429 (605)
++++++|++..| ++++|+||||||||||+|++ .|..-|..+. .++.+
T Consensus 651 v~ndisl~~~~g-----~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~---------~~~~~----------- 705 (934)
T 3thx_A 651 IPNDVYFEKDKQ-----MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA---------EVSIV----------- 705 (934)
T ss_dssp CCEEEEEETTTB-----CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE---------EEECC-----------
T ss_pred ecccceeecCCC-----eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc---------cchHH-----------
Confidence 456777777666 78999999999999999999 3433332211 01110
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHH--ccCCCEEEEecCCCCCCHHHHHHH-
Q 040300 430 VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL--GKPADIYLIDEPSAYLDSEQRIVA- 506 (605)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL--~~~p~lllLDEPt~~LD~~~~~~l- 506 (605)
..++..+++.+ .....+|+|+.+++.+|++| +.+|+++||||||+|||+..+..+
T Consensus 706 -------------------d~i~~~ig~~d---~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~ 763 (934)
T 3thx_A 706 -------------------DCILARVGAGD---SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLA 763 (934)
T ss_dssp -------------------SEEEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHH
T ss_pred -------------------HHHHHhcCchh---hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHH
Confidence 01222333332 22456788888888888887 999999999999999999998888
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
+.+++.+.++.|.++|++|||.+++ .+||++..+
T Consensus 764 ~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v 797 (934)
T 3thx_A 764 WAISEYIATKIGAFCMFATHFHELT-ALANQIPTV 797 (934)
T ss_dssp HHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTE
T ss_pred HHHHHHHHhcCCCEEEEEcCcHHHH-HHhccccee
Confidence 6667777555689999999997665 578886443
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=1.4e-17 Score=163.73 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=102.8
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|.+.+|++++|+||||||||||++.|++...++.|.+ .|+..+. +..+.........+......
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v----------~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC----------IYVTTEE------SRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE----------EEEESSS------CHHHHHHHHHHTTCCCGGGB
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE----------EEEEccc------CHHHHHHHHHHhcchHHHHh
Confidence 4577789999999999999999999998876655443 3333221 11111100000000000000
Q ss_pred -------HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCC--CHHHHHHHHHHHHHHHhcC
Q 040300 449 -------SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYL--DSEQRIVAAKVIKRFILHA 517 (605)
Q Consensus 449 -------~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~L--D~~~~~~l~~~l~~l~~~~ 517 (605)
+.....++ .. ......|.+++++...+.+...+|+ +++|||||+++ |+..+..+++.|++++++.
T Consensus 82 ~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~ 157 (235)
T 2w0m_A 82 EKKLIIIDALMKEKE-DQ---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW 157 (235)
T ss_dssp TTTEEEEECCC-----CT---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT
T ss_pred hCCEEEEeccccccC-ce---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 00000000 00 0113459999999988888888999 99999999888 9999999999999988777
Q ss_pred CcEEEEEecCH--------HHHHhhcCEEEEEeC
Q 040300 518 KKTAFVVEHDF--------IMATYLADRVIVYEG 543 (605)
Q Consensus 518 g~tiivvsHD~--------~~~~~~adrviv~~g 543 (605)
|.|||+++|+. ..+.++||+|++|+.
T Consensus 158 ~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 158 NFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp TEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred CCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 99999999999 558899999999974
No 154
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.70 E-value=4.8e-18 Score=201.17 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=95.8
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhc
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG 182 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 182 (605)
|++++|+||||||||||||+| |++.+- .. .| .+.||....+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------aq-iG-----------------~~Vpq~~~~l------ 829 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------AQ-MG-----------------CYVPAEVCRL------ 829 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHH--------------HT-TT-----------------CCEESSEEEE------
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHH--------------hh-ee-----------------EEeccCcCCC------
Confidence 899999999999999999999 986531 00 00 0112211100
Q ss_pred hhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHHHHHHHH
Q 040300 183 NVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR-LKAAQVVRS 261 (605)
Q Consensus 183 ~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r-~~~~~~i~~ 261 (605)
++.+ .++..+|+.+.+.+..+++|+++++ +++|++++.+|+++||||||+|+|+... ..++.+|+.
T Consensus 830 ~v~d------------~I~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~ 896 (1022)
T 2o8b_B 830 TPID------------RVFTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE 896 (1022)
T ss_dssp CCCS------------BEEEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHH------------HHHHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence 0111 0122345555455566778877665 9999999999999999999999999875 557889999
Q ss_pred hhcC-CcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 262 LLRP-NSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 262 l~~~-g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+.+. |.++|++||+++++..++|++.++.|
T Consensus 897 L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g 927 (1022)
T 2o8b_B 897 LAETIKCRTLFSTHYHSLVEDYSQNVAVRLG 927 (1022)
T ss_dssp HHHTSCCEEEEECCCHHHHHHTSSCSSEEEE
T ss_pred HHhcCCCEEEEEeCCHHHHHHhCCcceeecC
Confidence 9876 89999999999999999999888754
No 155
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.69 E-value=3.1e-19 Score=185.71 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=98.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhh--hHHHHHHHHHHHhhcccccccch
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQN--YFTRILEDNLKAIIKPQYVDHIP 177 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~--~~~~~~~~~~~~~~~~q~~~~~~ 177 (605)
+.+|+++||+|+||||||||+++|+|+++|+.|.-. + +...|+ ++.....+++. +...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~--------v----~~v~qd~~~~~~t~~e~~~------~~~~-- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR--------V----DLVTTDGFLYPNAELQRRN------LMHR-- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCC--------E----EEEEGGGGBCCHHHHHHTT------CTTC--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCe--------E----EEEecCccCCcccHHHHHH------HHHh--
Confidence 578999999999999999999999999999766310 0 000111 11111111110 0000
Q ss_pred hhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 040300 178 KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQ 257 (605)
Q Consensus 178 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~ 257 (605)
.+ .......+.+.++++.++ ....+..+.+|||||+||+++|++++.+|+|||||||++.+|+.. .
T Consensus 147 ---~g-----~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~ 212 (312)
T 3aez_A 147 ---KG-----FPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----L 212 (312)
T ss_dssp ---TT-----SGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----C
T ss_pred ---cC-----CChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----H
Confidence 00 001112345667788887 555668889999999999999999999999999999999998521 1
Q ss_pred HHHHhhcCCcEEEEEecCHhHHH-hhcCEEEEE
Q 040300 258 VVRSLLRPNSYVIVVEHDLSVLD-YLSDFICCL 289 (605)
Q Consensus 258 ~i~~l~~~g~tvivvsHdl~~l~-~~~D~i~vl 289 (605)
.+.++. -.+|+|+|+.+... .+.+|.+.+
T Consensus 213 ~l~~~~---D~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 213 MVSDLF---DFSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp CGGGGC---SEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHhc---CcEEEEECCHHHHHHHHHHHHHHH
Confidence 122222 24688888887653 344554444
No 156
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.69 E-value=3e-18 Score=179.69 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=90.3
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+++|++++|+|+||||||||+++|+|+++|+.|.+.. .|.. .+. .++. ..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i-----------~~~~--e~~------------~~~~----~~- 217 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI-----------EDTE--EIV------------FKHH----KN- 217 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE-----------ESSC--CCC------------CSSC----SS-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE-----------CCee--ccc------------cccc----hh-
Confidence 4689999999999999999999999999999998742 1110 000 0000 00
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
.+. ++. . |||+||++||+||.++|+++||||||+. ++.++|
T Consensus 218 ---~i~-~~~--------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l 258 (330)
T 2pt7_A 218 ---YTQ-LFF--------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFY 258 (330)
T ss_dssp ---EEE-EEC--------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHH
T ss_pred ---EEE-EEe--------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHH
Confidence 000 000 0 8999999999999999999999999992 356677
Q ss_pred HHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 260 RSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 260 ~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+.+...+.|+|+++|+++ +...+|++++|.
T Consensus 259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~ 288 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMS 288 (330)
T ss_dssp HHHHTTCCCEEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEcccH-HHHHhhhheehh
Confidence 777653458999999999 666899998885
No 157
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.69 E-value=6.2e-20 Score=189.81 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=93.9
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
+++++|+ ...|.+++ .+.+|++++|+||||||||||+++|+|++ .|+|..- .... ..+|..
T Consensus 106 ~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~----------v~q~-~~lf~~-- 167 (305)
T 2v9p_A 106 NIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF----------ANHK-SHFWLA-- 167 (305)
T ss_dssp TCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG----------GGTT-SGGGGG--
T ss_pred EEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE----------ecCc-cccccc--
Confidence 3444564 12355555 45799999999999999999999999998 7887420 0000 000100
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMF 240 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlll 240 (605)
.+ . ..++...+ ... ..+.+.++.+ |.+.++ ...|||||||| ||||+++|+|||
T Consensus 168 --ti--~--~~ni~~~~------------~~~--~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl- 220 (305)
T 2v9p_A 168 --SL--A--DTRAALVD------------DAT--HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV- 220 (305)
T ss_dssp --GG--T--TCSCEEEE------------EEC--HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE-
T ss_pred --cH--H--HHhhccCc------------ccc--HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE-
Confidence 00 0 00000000 000 1234445543 444444 78999999999 999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 241 DEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 241 DEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
||+||+.++..+.. ++|++..+ ..||+| +|..
T Consensus 221 ---Ts~LD~~~~~~i~~--------------ltH~~~~~-~~aD~i-vl~~ 252 (305)
T 2v9p_A 221 ---TSNIDVQAEDRYLY--------------LHSRVQTF-RFEQPC-TDES 252 (305)
T ss_dssp ---EESSCSTTCGGGGG--------------GTTTEEEE-ECCCCC-CCC-
T ss_pred ---ECCCCHHHHHHHHH--------------HhCCHHHH-HhCCEE-EEeC
Confidence 99999987766541 28998876 579999 9864
No 158
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.68 E-value=3.7e-18 Score=185.40 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=115.6
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cc---ccC------------
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DV---EIP------------ 411 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~---~~~------------ 411 (605)
++.|....++++++ |.+.+| |+++|+||||||||||+++|+|+.+|+.|.+. +. +..
T Consensus 138 ~~~~~tg~~vld~v-l~i~~G-----q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l 211 (438)
T 2dpy_A 138 EHVLDTGVRAINAL-LTVGRG-----QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGR 211 (438)
T ss_dssp CSBCCCSCHHHHHH-SCCBTT-----CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHH
T ss_pred ceecCCCceEEeee-EEecCC-----CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccccc
Confidence 56665333467888 888887 78999999999999999999999999999764 22 111
Q ss_pred cceeEeecCcC-CCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 412 EFNVSYKPQKI-SPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 412 ~~~i~y~~q~~-~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
...++|++|.. ......++.++...... +..+ ..-.+..+++ .+..||+|| |||+|| +.+|++
T Consensus 212 ~r~i~~v~q~~~~~~~~~~v~~~~~~~ae-------~~~~--~~~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~-- 275 (438)
T 2dpy_A 212 ARSVVIAAPADVSPLLRMQGAAYATRIAE-------DFRD--RGQHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA-- 275 (438)
T ss_dssp HTEEEEEECTTSCHHHHHHHHHHHHHHHH-------HHHT--TTCEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHH-------HHHh--CCCCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc--
Confidence 13589999853 22234466555432100 0000 0011112222 378899999 999999 788888
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEecCHHHHHhhcCEEEEEeC
Q 040300 491 IDEPSAYLDSEQRIVAAKVIKRFIL---HAKK-----TAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 491 LDEPt~~LD~~~~~~l~~~l~~l~~---~~g~-----tiivvsHD~~~~~~~adrviv~~g 543 (605)
|+|||+..+..+.++++++.+ +.|. ||+++|||++ ..+||+++++.+
T Consensus 276 ----t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~d 330 (438)
T 2dpy_A 276 ----TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILD 330 (438)
T ss_dssp ----SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSS
T ss_pred ----cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeC
Confidence 999999999999999999754 2364 9999999996 345566555543
No 159
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.68 E-value=6.1e-19 Score=179.88 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=82.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCC-hh-hhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh-hhh
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD-WQ-EILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK-AVQ 181 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~-~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~-~~~ 181 (605)
.++|+||||||||||+|+|+|+..|+.|++..... .. .......+..+ |.....+. .+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~------------------q~~~~~~~ltv~ 65 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVI------------------EEGGVKMKLTVI 65 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESC------------------C----CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEe------------------ecCCCcCCceEE
Confidence 58999999999999999999999999998742100 00 00000001111 11000000 000
Q ss_pred chhh--hhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 182 GNVG--QVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 182 ~~v~--~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
.++. .........+.+.+++. ....++.+.+|||||+||++||||++. +|++|||+++||+.. .+++
T Consensus 66 d~~~~g~~~~~~~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l 134 (270)
T 3sop_A 66 DTPGFGDQINNENCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFM 134 (270)
T ss_dssp CCCC--CCSBCTTCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHH
T ss_pred echhhhhhcccHHHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHH
Confidence 0100 00011111122333332 456677888999999999999999886 999999999999976 4566
Q ss_pred HHhhcCCcEEEEEecCHhHH
Q 040300 260 RSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 260 ~~l~~~g~tvivvsHdl~~l 279 (605)
+.|.+. .+||+|.|..+.+
T Consensus 135 ~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 135 KHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHTT-SEEEEEETTGGGS
T ss_pred HHHHhc-CcEEEEEeccccC
Confidence 666665 8899999886544
No 160
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.68 E-value=7.1e-17 Score=164.95 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=104.6
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee-cccc-CcceeEeecCcCCCCCcCcHHHHHH--hhhccCCCCH
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS-DVEI-PEFNVSYKPQKISPKFQSTVRHLLH--QKIRDSYTHP 445 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~-~~~~-~~~~i~y~~q~~~~~~~~tv~~~~~--~~~~~~~~~~ 445 (605)
.+.+|++++|+||||||||||++.|++.+.. |.+. +... ....+.|+..+. +..++.. ...... ...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~------~~~~~~~r~~~~g~~-~~~ 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAED------PPTAIHHRLHALGAH-LSA 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSS------CHHHHHHHHHHHHTT-SCH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCC------CHHHHHHHHHHHHhh-cCh
Confidence 4778899999999999999999999986542 3321 1111 123466765432 2222111 111111 123
Q ss_pred HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC--CCCHHHH---HHHHHHHHHHHhcCCcE
Q 040300 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA--YLDSEQR---IVAAKVIKRFILHAKKT 520 (605)
Q Consensus 446 ~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~--~LD~~~~---~~l~~~l~~l~~~~g~t 520 (605)
....++++.+.+.+..++++..||+||+|++ ++++.+|+++||||||+ ++|.... ..+++.|++++++.|.|
T Consensus 97 ~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t 173 (279)
T 1nlf_A 97 EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 173 (279)
T ss_dssp HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence 4456678888888888899999999998865 57888999999999999 9997443 78888888887667999
Q ss_pred EEEEecCHHHHH
Q 040300 521 AFVVEHDFIMAT 532 (605)
Q Consensus 521 iivvsHD~~~~~ 532 (605)
||+++|+.....
T Consensus 174 vi~i~H~~~~~~ 185 (279)
T 1nlf_A 174 IVFLHHASKGAA 185 (279)
T ss_dssp EEEEEEC-----
T ss_pred EEEEecCCCccc
Confidence 999999987654
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.68 E-value=4.6e-18 Score=172.58 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=87.6
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCC-eeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPD-SVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD 450 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 450 (605)
.+|++++|+||||||||||+++|+|+++|+ +|.+.. ....+.|++|..... +..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~---~g~~i~~~~~~~~~~------------v~q---------- 77 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT---IEDPIEYVFKHKKSI------------VNQ---------- 77 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE---EESSCCSCCCCSSSE------------EEE----------
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE---cCCcceeecCCccee------------eeH----------
Confidence 445899999999999999999999999997 888741 112244554432100 000
Q ss_pred HHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q 040300 451 VMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM 530 (605)
Q Consensus 451 ~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~ 530 (605)
..++++. .+| |++||++|.++|+++|||||| |+++...+ ++.. +.|.+|++++|+.+
T Consensus 78 --~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~--~~g~~vl~t~H~~~- 134 (261)
T 2eyu_A 78 --REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA---LRAA--ETGHLVFGTLHTNT- 134 (261)
T ss_dssp --EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHH--HTTCEEEEEECCSS-
T ss_pred --HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHH--ccCCEEEEEeCcch-
Confidence 0223221 222 899999999999999999999 99876544 4432 35899999999977
Q ss_pred HHhhcCEEEEEe
Q 040300 531 ATYLADRVIVYE 542 (605)
Q Consensus 531 ~~~~adrviv~~ 542 (605)
+...+||+++|.
T Consensus 135 ~~~~~dri~~l~ 146 (261)
T 2eyu_A 135 AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHhhhc
Confidence 567889988775
No 162
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.68 E-value=2.4e-17 Score=192.56 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=92.0
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcc
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKP 170 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 170 (605)
|.+++++ .+.+|++++|+||||||||||||++++.... .. .| .+.|
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~---------------aq-~g-----------------~~vp 707 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM---------------AQ-IG-----------------SYVP 707 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH---------------HH-HT-----------------CCBS
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH---------------hh-cC-----------------cccc
Confidence 3344443 2468999999999999999999999764210 00 00 0001
Q ss_pred cccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 040300 171 QYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK 250 (605)
Q Consensus 171 q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~ 250 (605)
.....++ . ++.++..+|+.+.+.+..+++|+|++|++.|+++ +.+|+++||||||+|||+.
T Consensus 708 a~~~~i~-----~-------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 708 AEEATIG-----I-------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp SSEEEEE-----C-------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred chhhhhh-----H-------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 1000000 0 0123344566666777889999999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHhhc-CCcEEEEEecCHhHHHhhcC
Q 040300 251 QRLKAA-QVVRSLLR-PNSYVIVVEHDLSVLDYLSD 284 (605)
Q Consensus 251 ~r~~~~-~~i~~l~~-~g~tvivvsHdl~~l~~~~D 284 (605)
.+..++ .+++.+.+ .|.+||++|||+++.. ++|
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~ 803 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEK 803 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHh
Confidence 998887 67787765 5999999999987664 444
No 163
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.67 E-value=1.7e-19 Score=178.07 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=97.8
Q ss_pred eecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhh---hhhhcc--chhhhhHHHHHHHHHHHh
Q 040300 94 LHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEI---LTYFRG--SELQNYFTRILEDNLKAI 167 (605)
Q Consensus 94 l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~---~~~~~g--~~l~~~~~~~~~~~~~~~ 167 (605)
|.+++ .+.+|++++|+||||||||||+++|+|++ | |.+....+.... .....+ ..+++.. .+.... .
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~-~- 85 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKT--IFEDKL-K- 85 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHH--HHHHHH-H-
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHH--HHHHhh-h-
Confidence 44444 34789999999999999999999999998 6 776421110000 000011 1112110 111100 0
Q ss_pred hcccccccchhhhhchhhh-hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHH-----HHHHccCCCEEEEe
Q 040300 168 IKPQYVDHIPKAVQGNVGQ-VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAI-----AVVAVQNAEIYMFD 241 (605)
Q Consensus 168 ~~~q~~~~~~~~~~~~v~~-~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaI-----A~aL~~~p~vlllD 241 (605)
...++.. +++.. .+... ...++++++...+. +++ .+|||||+||++| |++++.+|++++||
T Consensus 86 -~~~~l~~------~~~~~~~~g~~--~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld 152 (218)
T 1z6g_A 86 -NEDFLEY------DNYANNFYGTL--KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLL 152 (218)
T ss_dssp -TTCEEEE------EEETTEEEEEE--HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH
T ss_pred -ccchhhh------hhcccccCCCc--HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH
Confidence 0011110 00100 01001 12355566654432 333 5799999999999 89999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc-------CCcEEEEEecCHhHHHhhcCEE
Q 040300 242 EPSSYLDVKQRLKAAQVVRSLLR-------PNSYVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 242 EPts~LD~~~r~~~~~~i~~l~~-------~g~tvivvsHdl~~l~~~~D~i 286 (605)
|||+.+|..+...+.+.|.++.+ .....|+|+||++++...++++
T Consensus 153 e~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 153 SRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 99999998877777777766543 2345666667766666555444
No 164
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.67 E-value=1.2e-17 Score=167.50 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=101.1
Q ss_pred eeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 357 KTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 357 ~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
..+++++|++.+| +++||+||||||||||+++|+|++ |.+... .....++|++|+. .....|+.++...
T Consensus 13 ~~l~~isl~i~~g-----~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~ 81 (245)
T 2jeo_A 13 LGTENLYFQSMRP-----FLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKA 81 (245)
T ss_dssp ----------CCS-----EEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHH
T ss_pred eeecceeccCCCC-----EEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCc-CccccCHhHhhhh
Confidence 3688999988887 689999999999999999999976 332100 1134588999984 3345688776532
Q ss_pred hhcc-CCC-----CHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040300 437 KIRD-SYT-----HPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVI 510 (605)
Q Consensus 437 ~~~~-~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 510 (605)
.... .+. +.....+.++.+ .+..+.++..||+||+||+++ ++++.+|+++|||||...+|.. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l 150 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------I 150 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------H
T ss_pred hccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------H
Confidence 2111 111 122233444443 455677889999999999988 5888899999999999888863 2
Q ss_pred HHHHhcCCcEEEEEecC-HHHHHhhcCEE
Q 040300 511 KRFILHAKKTAFVVEHD-FIMATYLADRV 538 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD-~~~~~~~adrv 538 (605)
.++ .+.+|+++||+ ......+++++
T Consensus 151 ~~~---~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 151 RDM---FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp HTT---CSEEEEEECCHHHHHHHHHHHHT
T ss_pred HHh---cCeEEEEECCHHHHHHHHHHHHH
Confidence 332 37899999997 44445555544
No 165
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.67 E-value=2.7e-17 Score=189.39 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=93.9
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCC-CCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLK-PDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~-p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
++++++|+ |++++|+||||||||||+|+|+|+.. |+.|.+. ......+++++|- ....++.+++
T Consensus 568 vl~disl~--------g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--pa~~~~i~~v~~i---~~~~~~~d~l-- 632 (765)
T 1ewq_A 568 VPNDLEMA--------HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV--PAEEAHLPLFDGI---YTRIGASDDL-- 632 (765)
T ss_dssp CCEEEEES--------SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCSEE---EEECCC------
T ss_pred EeeeccCC--------CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee--ehhccceeeHHHh---hccCCHHHHH--
Confidence 45666666 47999999999999999999999874 6667542 1112345665541 1112222221
Q ss_pred hhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHH--ccCCCEEEEecC---CCCCCHHHH-HHHHHHH
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL--GKPADIYLIDEP---SAYLDSEQR-IVAAKVI 510 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL--~~~p~lllLDEP---t~~LD~~~~-~~l~~~l 510 (605)
...+|+|++|++.+|++| +.+|+++||||| |++||..+. ..+.+.|
T Consensus 633 ----------------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L 684 (765)
T 1ewq_A 633 ----------------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 684 (765)
T ss_dssp ------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ----------------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHH
Confidence 124799999999999999 999999999999 999999876 4566666
Q ss_pred HHHHhcCCcEEEEEecCHHHHHhhc
Q 040300 511 KRFILHAKKTAFVVEHDFIMATYLA 535 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD~~~~~~~a 535 (605)
.+ .|.|+|++|||.+++. ++
T Consensus 685 ~~----~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 685 HE----RRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HH----HTCEEEEECCCHHHHT-CC
T ss_pred Hh----CCCEEEEEeCCHHHHH-hh
Confidence 55 3899999999988764 44
No 166
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.66 E-value=2.4e-17 Score=193.09 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=59.6
Q ss_pred cCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEE
Q 040300 213 NVGDLSGGELQRFAIAVVA--VQNAEIYMFDEPSSYLDVKQRLKA-AQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL--~~~p~vlllDEPts~LD~~~r~~~-~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
....+|+|+.++..+|++| +.+|+++||||||+|||+..+..+ +.+++.+.+ .|.++|++||+.++. .++|++..
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~ 796 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPT 796 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccce
Confidence 3456788888888888888 999999999999999999988887 567777775 499999999997655 57888655
Q ss_pred E
Q 040300 289 L 289 (605)
Q Consensus 289 l 289 (605)
+
T Consensus 797 v 797 (934)
T 3thx_A 797 V 797 (934)
T ss_dssp E
T ss_pred e
Confidence 5
No 167
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.66 E-value=6.1e-19 Score=186.07 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=110.2
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc---cC-----------c
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE---IP-----------E 412 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~---~~-----------~ 412 (605)
+..|....++++++ |.+..| |+++|+||||||||||+++|+|+.+|+.|.+. +.. .. .
T Consensus 52 ~~~~~tg~~ald~l-l~i~~G-----q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~ 125 (347)
T 2obl_A 52 DQPFILGVRAIDGL-LTCGIG-----QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLS 125 (347)
T ss_dssp CSEECCSCHHHHHH-SCEETT-----CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHT
T ss_pred ceecCCCCEEEEee-eeecCC-----CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhh
Confidence 55665333467888 888887 79999999999999999999999999998763 111 00 0
Q ss_pred ceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCc-hhhccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q 040300 413 FNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIE-QLMDQEVVNLSGGELQRVALCLCLGKPADIYLI 491 (605)
Q Consensus 413 ~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllL 491 (605)
..+.+++|... +..+.+..... .....+.....+-. -.+-..+..||+|| |||++| +.+|++
T Consensus 126 ~~v~~~~~~~~-----~~~~r~~~~~~-----~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 126 KCVLVVTTSDR-----PALERMKAAFT-----ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp TEEEEEECTTS-----CHHHHHHHHHH-----HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred ceEEEEECCCC-----CHHHHHHHHHH-----HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 11333333211 11111100000 00001111111100 00115689999999 999999 577777
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEecCHHHHHhhcCEEEEEeCCc
Q 040300 492 DEPSAYLDSEQRIVAAKVIKRFIL-HAKK-----TAFVVEHDFIMATYLADRVIVYEGQP 545 (605)
Q Consensus 492 DEPt~~LD~~~~~~l~~~l~~l~~-~~g~-----tiivvsHD~~~~~~~adrviv~~g~~ 545 (605)
|+|||+..+..+.++++++.. +.|. ||+++|||++ ..+||+++++.++.
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~ 243 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGH 243 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEE
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcE
Confidence 999999999999999999754 4577 8999999998 67899988876543
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.65 E-value=1.2e-16 Score=156.99 Aligned_cols=158 Identities=14% Similarity=0.068 Sum_probs=100.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 180 (605)
.+|++++|+|+||||||||++.|++...++.|.+. |.+.+.. ...+..........++....
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI-----------YVTTEES--RDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE-----------EEESSSC--HHHHHHHHHHTTCCCGGGBT-----
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE-----------EEEcccC--HHHHHHHHHHhcchHHHHhh-----
Confidence 58999999999999999999999998877666542 1111110 00000000001111111000
Q ss_pred hchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHH
Q 040300 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYL--DVKQRLKAA 256 (605)
Q Consensus 181 ~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~L--D~~~r~~~~ 256 (605)
..+ ..++.. ...++ ... .....|.+++++...+.+...+|+ ++++||||+.+ |+..+..++
T Consensus 83 -~~~-~~~~~~---------~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~ 147 (235)
T 2w0m_A 83 -KKL-IIIDAL---------MKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS 147 (235)
T ss_dssp -TTE-EEEECC---------C-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH
T ss_pred -CCE-EEEecc---------ccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH
Confidence 000 000000 00001 111 123459999999988888888999 99999999888 998888999
Q ss_pred HHHHHhhc-CCcEEEEEecCH--------hHHHhhcCEEEEEeC
Q 040300 257 QVVRSLLR-PNSYVIVVEHDL--------SVLDYLSDFICCLYG 291 (605)
Q Consensus 257 ~~i~~l~~-~g~tvivvsHdl--------~~l~~~~D~i~vl~g 291 (605)
+.|+++++ .|.|||+++|+. ..+..+||+|++|+.
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 99999865 599999999999 558889999999964
No 169
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.65 E-value=5.8e-18 Score=178.57 Aligned_cols=182 Identities=13% Similarity=0.129 Sum_probs=107.5
Q ss_pred CceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCC-ChhhhhhhhccchhhhhHHHHH
Q 040300 82 DTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPP-DWQEILTYFRGSELQNYFTRIL 160 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~-~~~~~~~~~~g~~l~~~~~~~~ 160 (605)
++++.|+.....++.+-.+.+||++||+|+||||||||+++|+|...|+.|.+.... ...++. .+.+. ++. ..+
T Consensus 50 ~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~-~~i~~-~~~---~~~ 124 (347)
T 2obl_A 50 VIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN-EFLAL-LPQ---STL 124 (347)
T ss_dssp CCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH-HHHTT-SCH---HHH
T ss_pred ccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH-HHHHh-hhh---hhh
Confidence 455677633234555533579999999999999999999999999999999774210 111110 01111 000 000
Q ss_pred HHHHHHhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 161 EDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 161 ~~~~~~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
.. ...+..+. ..+.. ..+.. ....-...+.+...+-.- .+-+.+..||+|| ||+++| +.+|++
T Consensus 125 ~~--~v~~~~~~--~~~~~--~r~~~----~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 125 SK--CVLVVTTS--DRPAL--ERMKA----AFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp TT--EEEEEECT--TSCHH--HHHHH----HHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred hc--eEEEEECC--CCCHH--HHHHH----HHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 00 00000000 00000 00000 000000111111111110 0115788999999 999999 688877
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhc--CCc-----EEEEEecCHhHHHhhcCEEEEEe
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLLR--PNS-----YVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~~--~g~-----tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
|++||+..+..+.++++++.+ .|. ||+++|||++ +.+||++.++.
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~ 240 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSIL 240 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHC
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEee
Confidence 999999999999999999974 477 8999999998 77889887774
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.65 E-value=7.1e-18 Score=163.01 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=92.8
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-----cCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-----IPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-----~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
||+++|+||||||||||+++|+|+++ ++| +. +.. .....++|++|.... + +.++. .. .+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g----~-~~~l~-~~--~~~~~- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG----T-RGPLS-RV--GLEPP- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS----C-EEEEE-EC--CCCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc----c-eehhh-cc--cccCC-
Confidence 57899999999999999999999998 777 53 111 113457888887421 1 01110 00 00000
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhHHHHH-HHHH---HHccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGELQRV-ALCL---CLGKPADIYLIDE--PSAYLDSEQRIVAAKVIKRFILHAKKT 520 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe~QRv-aiA~---aL~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~l~~~~g~t 520 (605)
.........++...||+||++++ ++++ |++.+|++||||| |+..+|......+ +++..+...+
T Consensus 70 -------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l----~~~l~~~~~~ 138 (189)
T 2i3b_A 70 -------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV----RQTLSTPGTI 138 (189)
T ss_dssp -------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH----HHHHHCSSCC
T ss_pred -------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH----HHHHhCCCcE
Confidence 00001134556678999999998 4454 6889999999999 8999999755544 4444433333
Q ss_pred EE---EEecCH--HHHHhhcC----EEEEEe
Q 040300 521 AF---VVEHDF--IMATYLAD----RVIVYE 542 (605)
Q Consensus 521 ii---vvsHD~--~~~~~~ad----rviv~~ 542 (605)
++ .||||. .+++++++ +|+.+.
T Consensus 139 ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 139 ILGTIPVPKGKPLALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp EEEECCCCCSSCCTTHHHHHTTCCSEEEECC
T ss_pred EEEEeecCCCCchHHHHHHeecCCcEEEEeC
Confidence 42 445986 66777665 555554
No 171
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.65 E-value=1.3e-17 Score=172.91 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=94.1
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cceeEeecCcCCCCCcCcHHHHHHhh
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EFNVSYKPQKISPKFQSTVRHLLHQK 437 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~~i~y~~q~~~~~~~~tv~~~~~~~ 437 (605)
+|++++|+||||||||||+++|+|+++|++|++. +.+.. ...++|++|........++.+++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999875 11110 12488999986554445676665421
Q ss_pred hccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 040300 438 IRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD--IYLIDEPSAYLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 438 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~l~~ 515 (605)
...... ..+++..|..+..++.+.+|| +||++|||||+.+|+ +|.|| |+++. .+.+.++++.+
T Consensus 181 ~~~~~d-----~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~~~~~~~~~ 245 (304)
T 1rj9_A 181 KARGYD-----LLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGLEQAKKFHE 245 (304)
T ss_dssp HHHTCS-----EEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHHHHHHHHHH
T ss_pred HhCCCC-----EEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHHHHHHHHHH
Confidence 111110 012333444333333344454 899999999999999 55566 55554 44555666655
Q ss_pred cCCcEEEEEecCH
Q 040300 516 HAKKTAFVVEHDF 528 (605)
Q Consensus 516 ~~g~tiivvsHD~ 528 (605)
..+.|+|++||+.
T Consensus 246 ~~~~t~iivTh~d 258 (304)
T 1rj9_A 246 AVGLTGVIVTKLD 258 (304)
T ss_dssp HHCCSEEEEECTT
T ss_pred HcCCcEEEEECCc
Confidence 4589999999984
No 172
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.63 E-value=3e-16 Score=154.28 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=43.0
Q ss_pred cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHhhcC-CcEEEEEec----CHhHHHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYLDVK--------Q----RLKAAQVVRSLLRP-NSYVIVVEH----DLSVLDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~--------~----r~~~~~~i~~l~~~-g~tvivvsH----dl~~l~~~~D~i~vl~g 291 (605)
.+|+++++||||+.||+. + ...+++.|.+++++ |.|||+||| +-..+.++||++++|+.
T Consensus 124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 499999999999999983 2 22567777777654 999999999 55559999999999974
No 173
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.63 E-value=8.7e-16 Score=146.12 Aligned_cols=79 Identities=30% Similarity=0.346 Sum_probs=69.5
Q ss_pred hccCcCcCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcC
Q 040300 461 MDQEVVNLSGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536 (605)
Q Consensus 461 ~~~~~~~LSGGe~QRvaiA~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ad 536 (605)
..+++..||||||||++||++|+ .+|++|||||||++||+.++..+.++|+++.. +.++|+|||+.... .+||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~-~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMM-ANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHH-TTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHH-HhCC
Confidence 45678999999999999999997 45799999999999999999999999999743 57899999997665 6799
Q ss_pred EEEEEe
Q 040300 537 RVIVYE 542 (605)
Q Consensus 537 rviv~~ 542 (605)
+++.+.
T Consensus 135 ~i~~v~ 140 (173)
T 3kta_B 135 KIIGVS 140 (173)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999764
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.62 E-value=1.8e-15 Score=147.80 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=97.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|.+.+|++++|+||||+|||||++.|++ .+ .+ ++.|+..+.. .+...+... ........
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~----------~v~~i~~~~~----~~~~~~~~~-~~~~~~~~--- 73 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GK----------KVAYVDTEGG----FSPERLVQM-AETRGLNP--- 73 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CS----------EEEEEESSCC----CCHHHHHHH-HHTTTCCH---
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CC----------cEEEEECCCC----CCHHHHHHH-HHhcCCCh---
Confidence 5678889999999999999999999999 21 11 2445543321 112111110 00101111
Q ss_pred HHHHhhcCCchhhccCcCcCChhH--HHHHHHHHHHccC-CCEEEEecCCCCCCHHH--------HHHHHHHHHHHHhcC
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGE--LQRVALCLCLGKP-ADIYLIDEPSAYLDSEQ--------RIVAAKVIKRFILHA 517 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe--~QRvaiA~aL~~~-p~lllLDEPt~~LD~~~--------~~~l~~~l~~l~~~~ 517 (605)
.++++.+ .+.++|+++ +|+++.+++++.+ |+++|+||||+.+|... ...+++.|++++++.
T Consensus 74 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~ 145 (220)
T 2cvh_A 74 EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKH 145 (220)
T ss_dssp HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHc
Confidence 1222221 344566665 4678888899886 99999999999999732 244566688877767
Q ss_pred CcEEEEEecCHH-------------HHHhhcCEEEEEeCC
Q 040300 518 KKTAFVVEHDFI-------------MATYLADRVIVYEGQ 544 (605)
Q Consensus 518 g~tiivvsHD~~-------------~~~~~adrviv~~g~ 544 (605)
+.|+|+++|... .+.++||++++++..
T Consensus 146 ~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 146 NIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 899999999865 577899999999743
No 175
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.61 E-value=8e-17 Score=174.88 Aligned_cols=177 Identities=17% Similarity=0.181 Sum_probs=106.0
Q ss_pred CCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccc---hhhhhHH
Q 040300 81 KDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS---ELQNYFT 157 (605)
Q Consensus 81 ~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~---~l~~~~~ 157 (605)
+++++.|+.....|+++-.+.+|++++|+|+||||||||+++|+|+.+|+.|.+.. .|. ++..+..
T Consensus 135 ~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~-----------~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL-----------IGERGREVKDFIE 203 (438)
T ss_dssp CCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE-----------ESCCHHHHHHHHH
T ss_pred eccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE-----------eceecHHHHHHHH
Confidence 35566776322245555345799999999999999999999999999999998742 222 2221110
Q ss_pred HHH-HHHHH--HhhcccccccchhhhhchhhhhcCchHHHHHHHHHHhhcC--CchhhcccCCCCChHHHHHHHHHHHHc
Q 040300 158 RIL-EDNLK--AIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLD--LNQVIDRNVGDLSGGELQRFAIAVVAV 232 (605)
Q Consensus 158 ~~~-~~~~~--~~~~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~--L~~~~dr~v~~LSGGe~QRvaIA~aL~ 232 (605)
... ...+. ..+.+|.-. +....-++.+.+. ...++...-+ ...+++ .+..||+|| ||++|| +
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~--~~~~~~~v~~~~~------~~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADV--SPLLRMQGAAYAT------RIAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTS--CHHHHHHHHHHHH------HHHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH---T
T ss_pred hhccccccCceEEEEECCCC--CHHHHHHHHHHHH------HHHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH---h
Confidence 000 00111 111222100 0000001111110 0111111111 112333 377899999 999999 8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc---C-Cc-----EEEEEecCHhHHHhhcCEEEEE
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR---P-NS-----YVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~---~-g~-----tvivvsHdl~~l~~~~D~i~vl 289 (605)
.+|++ |++||+..+..+.+++.++.+ . |. ||+++|||++ +.+||++++|
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l 328 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAI 328 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHH
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEE
Confidence 88888 999999999999999999876 3 64 9999999995 3444444333
No 176
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=2.7e-15 Score=142.75 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=71.7
Q ss_pred hhcccCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcC
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQ----NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD 284 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~----~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D 284 (605)
...+.+..||||||||++||++|+. +|++|||||||++||+..+..+.++|+++.+ +.++|+|||+...+ ..||
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~-~~ad 134 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMM-ANAD 134 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHH-TTCS
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHH-HhCC
Confidence 3457789999999999999999974 4699999999999999999999999999875 57899999998765 5899
Q ss_pred EEEEEeCc
Q 040300 285 FICCLYGK 292 (605)
Q Consensus 285 ~i~vl~g~ 292 (605)
+++.+...
T Consensus 135 ~i~~v~~~ 142 (173)
T 3kta_B 135 KIIGVSMR 142 (173)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99988643
No 177
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.61 E-value=7.2e-17 Score=163.76 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=89.1
Q ss_pred eecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCC-CceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccc
Q 040300 94 LHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPN-LGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQY 172 (605)
Q Consensus 94 l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~ 172 (605)
|.+++ +.+|++++|+||||||||||+++|+|+++|+ .|++.. .|..+... ++.
T Consensus 17 l~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~-----------~g~~i~~~--------------~~~ 70 (261)
T 2eyu_A 17 VLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-----------IEDPIEYV--------------FKH 70 (261)
T ss_dssp HHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE-----------EESSCCSC--------------CCC
T ss_pred HHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE-----------cCCcceee--------------cCC
Confidence 44455 5799999999999999999999999999997 898741 11111000 000
Q ss_pred cccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 040300 173 VDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQR 252 (605)
Q Consensus 173 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r 252 (605)
+.. ++.. ..+|++. ..| |++||++|.++|+++|+|||| |+.+.
T Consensus 71 ----~~~-------~v~q-----------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 71 ----KKS-------IVNQ-----------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp ----SSS-------EEEE-----------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred ----cce-------eeeH-----------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 000 0000 0233321 122 899999999999999999999 98876
Q ss_pred HHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 253 LKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 253 ~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
..+ ++.. ..|.+|++++|+.+ +...+|++++|.
T Consensus 114 ~~~---l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 114 ETA---LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHH---HHHH-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred HHH---HHHH-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 543 4433 45999999999988 556789887774
No 178
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.60 E-value=8.1e-16 Score=157.05 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=94.8
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCCh--hhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDW--QEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK 178 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~ 178 (605)
.+|++++|+|+||||||||++.|++.+.. |.+...... .....++...+....+ ...+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~~~~~~----~~r~~~------------ 89 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAEDPPTAI----HHRLHA------------ 89 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSSCHHHH----HHHHHH------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCCCHHHH----HHHHHH------------
Confidence 48999999999999999999999986542 322100000 0000111111110000 000000
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---HH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS--YLDVKQ---RL 253 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts--~LD~~~---r~ 253 (605)
+...+. .....++++.+++.+..++++..||+||+|++ ++++.+|+++|+||||+ ++|... ..
T Consensus 90 -----~g~~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 90 -----LGAHLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -----HHTTSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred -----HHhhcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 000000 12345667888888888899999999998865 57888999999999999 899743 36
Q ss_pred HHHHHHHHhhc-CCcEEEEEecCHhHHH
Q 040300 254 KAAQVVRSLLR-PNSYVIVVEHDLSVLD 280 (605)
Q Consensus 254 ~~~~~i~~l~~-~g~tvivvsHdl~~l~ 280 (605)
.+++.|+++++ .|.|||+++|+.....
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 77888888864 4999999999987654
No 179
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.60 E-value=2.7e-16 Score=181.97 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=91.2
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC-CeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP-DSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p-~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
++++++|+ .+| ++++|+||||||||||+|+|+|+..+ ..|.. .......+++++|
T Consensus 597 vlndisl~-~~g-----~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~--vpa~~~~i~~~~~---------------- 652 (800)
T 1wb9_A 597 IANPLNLS-PQR-----RMLIITGPNMGGKSTYMRQTALIALMAYIGSY--VPAQKVEIGPIDR---------------- 652 (800)
T ss_dssp CCEEEEEC-SSS-----CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC--BSSSEEEECCCCE----------------
T ss_pred eeeccccc-CCC-----cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc--cchhcccceeHHH----------------
Confidence 46777776 444 79999999999999999999997422 12211 0001112333322
Q ss_pred hhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH-HHHHHHHHh
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVA-AKVIKRFIL 515 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~ 515 (605)
++..++..+......+++|++++ +++.+..++.+|+++|||||++|+|+.....+ +.+++.+.+
T Consensus 653 --------------i~~~~~~~d~l~~~~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 653 --------------IFTRVGAADDLASGRSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp --------------EEEEEC-----------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred --------------HHhhCCHHHHHHhhhhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 11111211122223456677665 45555667999999999999999998877775 778888765
Q ss_pred cCCcEEEEEecCHHHHHhhcCEEEEE
Q 040300 516 HAKKTAFVVEHDFIMATYLADRVIVY 541 (605)
Q Consensus 516 ~~g~tiivvsHD~~~~~~~adrviv~ 541 (605)
+.|.++|++|||.+++. +||++..+
T Consensus 718 ~~g~~vl~~TH~~el~~-l~d~~~~v 742 (800)
T 1wb9_A 718 KIKALTLFATHYFELTQ-LPEKMEGV 742 (800)
T ss_dssp TTCCEEEEECSCGGGGG-HHHHSTTE
T ss_pred ccCCeEEEEeCCHHHHH-Hhhhhhce
Confidence 45899999999998764 78875433
No 180
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.59 E-value=1.3e-15 Score=169.16 Aligned_cols=80 Identities=28% Similarity=0.270 Sum_probs=73.7
Q ss_pred ccCcCcC-ChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEE
Q 040300 462 DQEVVNL-SGGELQRVALCLCLGKPA--DIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRV 538 (605)
Q Consensus 462 ~~~~~~L-SGGe~QRvaiA~aL~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrv 538 (605)
.+++.+| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.++|+++.. |.|||+||||++++. +|||+
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~ 467 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHH 467 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEE
Confidence 4678888 999999999999999999 99999999999999999999999999854 899999999999886 59999
Q ss_pred EEEeCC
Q 040300 539 IVYEGQ 544 (605)
Q Consensus 539 iv~~g~ 544 (605)
+++..+
T Consensus 468 ~~~~~~ 473 (517)
T 4ad8_A 468 YKVEKQ 473 (517)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999643
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.59 E-value=2.1e-17 Score=171.13 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=82.8
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcC-CCCCeeeee--ccc----cCcceeEeecCc
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGL-LKPDSVEDS--DVE----IPEFNVSYKPQK 421 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl-~~p~~G~i~--~~~----~~~~~i~y~~q~ 421 (605)
...|++. ..+++++|++ +|+|+||+|||||+++|+|. +.|++| +. +.. .....++|++|.
T Consensus 5 ~~~~~~~-~~l~~~~~~I-----------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 5 PNQVHRK-SVKKGFEFTL-----------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp --------------CEEE-----------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC-
T ss_pred cceECCE-EEEcCCCEEE-----------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC
Confidence 3445442 2466777654 89999999999999999998 888887 32 111 111236777776
Q ss_pred CCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCC-CCH
Q 040300 422 ISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAY-LDS 500 (605)
Q Consensus 422 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~-LD~ 500 (605)
......+++.+....... .........+.+. +.+..++++.++|||+|||+++|||++ ++++||||++ ||+
T Consensus 72 ~~~~~~ltv~Dt~g~~~~--~~~~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDA--INCRDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKP 143 (301)
T ss_dssp --CCEEEEEEEEC-------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCH
T ss_pred CCcccCcchhhhhhhhhh--cCcHHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCH
Confidence 443333444332211000 0000000111111 234456789999999999999999986 9999999985 999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q 040300 501 EQRIVAAKVIKRFILHAKKTAFVVEHDFI 529 (605)
Q Consensus 501 ~~~~~l~~~l~~l~~~~g~tiivvsHD~~ 529 (605)
... ++++++..+.+.++|+++||+.
T Consensus 144 ~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 144 LDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 763 5666665445789999999974
No 182
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.58 E-value=4.1e-16 Score=164.75 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=88.5
Q ss_pred eceeecCeEEEEEecCCCCHHHHHHHHHcCC--CCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCH
Q 040300 368 EGEFTDSQIIVMLGENGTGKTTFIRMLAGLL--KPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHP 445 (605)
Q Consensus 368 ~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~--~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~ 445 (605)
.|.+.+|++++|+||||||||||++.|++.. +|+.|.. .-.+-|+.-.... ....+..... . . ....
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~------~G~vi~i~~e~~~-~~~~i~~i~q-~--~-~~~~ 193 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL------NGSVIWIDTENTF-RPERIREIAQ-N--R-GLDP 193 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSC------SCEEEEEESSSCC-CHHHHHHHHH-T--T-TCCH
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCC------CCeEEEEeCCCCC-CHHHHHHHHH-H--c-CCCH
Confidence 3667778999999999999999999999998 6666310 0011222211110 0001111110 0 0 0111
Q ss_pred HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc-------cCCCEEEEecCCCCCCHHH------------HHHH
Q 040300 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG-------KPADIYLIDEPSAYLDSEQ------------RIVA 506 (605)
Q Consensus 446 ~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~-------~~p~lllLDEPt~~LD~~~------------~~~l 506 (605)
..+++.+.+.. . .-|++++|++.++++++ .+|+++|+||||++||+.. ...+
T Consensus 194 ---~~v~~ni~~~~----~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~ 264 (349)
T 1pzn_A 194 ---DEVLKHIYVAR----A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 264 (349)
T ss_dssp ---HHHGGGEEEEE----C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHH
T ss_pred ---HHHhhCEEEEe----c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHH
Confidence 12222221111 0 11577888888888887 6899999999999999862 4566
Q ss_pred HHHHHHHHhcCCcEEEEEecCHHHHH
Q 040300 507 AKVIKRFILHAKKTAFVVEHDFIMAT 532 (605)
Q Consensus 507 ~~~l~~l~~~~g~tiivvsHD~~~~~ 532 (605)
+..|++++++.+.|||+++|+.....
T Consensus 265 l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 265 LADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp HHHHHHHHHHTTCEEEEEEECC----
T ss_pred HHHHHHHHHHcCcEEEEEcccccccc
Confidence 77777777777999999999876544
No 183
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=4.3e-15 Score=145.01 Aligned_cols=78 Identities=18% Similarity=0.070 Sum_probs=60.9
Q ss_pred CCCCChHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHH--------HHHHHHHHHHHhhcC-CcEEEEEecCHh----
Q 040300 214 VGDLSGGE--LQRFAIAVVAVQN-AEIYMFDEPSSYLDVK--------QRLKAAQVVRSLLRP-NSYVIVVEHDLS---- 277 (605)
Q Consensus 214 v~~LSGGe--~QRvaIA~aL~~~-p~vlllDEPts~LD~~--------~r~~~~~~i~~l~~~-g~tvivvsHdl~---- 277 (605)
+.++|+++ +|+++.+++++.+ |+++|+||||+.||.. ....+++.|++++++ +.+||+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~ 161 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence 34556664 5678888899986 9999999999999973 224455667777654 899999999876
Q ss_pred ---------HHHhhcCEEEEEeC
Q 040300 278 ---------VLDYLSDFICCLYG 291 (605)
Q Consensus 278 ---------~l~~~~D~i~vl~g 291 (605)
.+.++||++++|+.
T Consensus 162 ~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 162 EMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp SSCCSCCCHHHHHTSSEEEEEEE
T ss_pred CccccCCCcceeecCcEEEEEEE
Confidence 67889999999964
No 184
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.57 E-value=2.9e-15 Score=166.38 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=73.3
Q ss_pred ccCCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEE
Q 040300 212 RNVGDL-SGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICC 288 (605)
Q Consensus 212 r~v~~L-SGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~v 288 (605)
+++.+| ||||+|||+||++|+.+| ++|||||||++||+..+..+.++|+++.+ +.+||+||||++++. .||++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEE
Confidence 567888 999999999999999999 99999999999999999999999999987 899999999999886 5999999
Q ss_pred EeC
Q 040300 289 LYG 291 (605)
Q Consensus 289 l~g 291 (605)
|+.
T Consensus 470 ~~~ 472 (517)
T 4ad8_A 470 VEK 472 (517)
T ss_dssp EEC
T ss_pred Eec
Confidence 964
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.56 E-value=4.1e-18 Score=166.26 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=108.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 180 (605)
++|+++||+|+||||||||+++|+|++.|..+-+...+ .++....+. ........ + ..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~------~~~~~~~~~------~~~~~~~~----~--~~~--- 62 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH------YYKDLGHLP------LEERLRVN----Y--DHP--- 62 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG------CBCCCTTSC------HHHHHHSC----T--TSG---
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc------cccCccccc------HHHhcCCC----C--CCh---
Confidence 58999999999999999999999999876323221100 001001000 00000000 0 000
Q ss_pred hchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCH
Q 040300 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGE----LQRFAIAVVAVQNAEIYMFDEPSSY-------LDV 249 (605)
Q Consensus 181 ~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe----~QRvaIA~aL~~~p~vlllDEPts~-------LD~ 249 (605)
....+.++.++++.+++.+..++++.++|+|| +||+++|++++.+|.++++||||++ ||+
T Consensus 63 ---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 63 ---------DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp ---------GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ---------hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 01123456677788888877888999999996 4788999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhh-cCCcEEEEEecCHhH-H-----------HhhcCEEEEEe
Q 040300 250 KQRLKAAQVVRSLL-RPNSYVIVVEHDLSV-L-----------DYLSDFICCLY 290 (605)
Q Consensus 250 ~~r~~~~~~i~~l~-~~g~tvivvsHdl~~-l-----------~~~~D~i~vl~ 290 (605)
.....+.+.+++.. +.|.|+++++|+... + ...||.|+.-.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~ 187 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRG 187 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEST
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCC
Confidence 88888888887753 458999999998532 2 14577776543
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.56 E-value=9e-16 Score=162.31 Aligned_cols=118 Identities=23% Similarity=0.176 Sum_probs=79.6
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCC-eeeeeccccC-----cceeEeecCcCCCCCcCcHHHHHHhhhccCCCCH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPD-SVEDSDVEIP-----EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHP 445 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-~G~i~~~~~~-----~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~ 445 (605)
.+|++++|+||||||||||+++|+|+++|+ .|.+.....+ ....++++|....
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~--------------------- 179 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVH--------------------- 179 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBT---------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeec---------------------
Confidence 456799999999999999999999999887 4544210000 0011122221000
Q ss_pred HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 446 QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 446 ~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
...+|..+ +||+||.++|++||+|||| |.+... .+.++.. .|.++|+++
T Consensus 180 -------------------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~G~~vl~t~ 228 (356)
T 3jvv_A 180 -------------------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-TGHLVFGTL 228 (356)
T ss_dssp -------------------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-TTCEEEEEE
T ss_pred -------------------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-cCCEEEEEE
Confidence 00111111 9999999999999999999 765533 3334333 599999999
Q ss_pred cCHHHHHhhcCEEEEEe
Q 040300 526 HDFIMATYLADRVIVYE 542 (605)
Q Consensus 526 HD~~~~~~~adrviv~~ 542 (605)
|+.+.+ ..+||+++|.
T Consensus 229 H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 229 HTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp SCSSHH-HHHHHHHHTS
T ss_pred ccChHH-HHHHHHhhhc
Confidence 999988 6789998874
No 187
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.55 E-value=1.7e-16 Score=164.51 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=85.1
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhh--HHH--HHHHHHHHhhcccccccch
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY--FTR--ILEDNLKAIIKPQYVDHIP 177 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~--~~~--~~~~~~~~~~~~q~~~~~~ 177 (605)
+|++++|+|+||||||||++.|+|+++|+.|++.. .|.+.... ..+ .+.......+.+|.....|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l-----------~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p 169 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF-----------CAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS 169 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE-----------ECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE-----------EeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH
Confidence 69999999999999999999999999999998741 11111100 000 0001111122223222222
Q ss_pred hhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q 040300 178 KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAE--IYMFDEPSSYLDVKQRLKA 255 (605)
Q Consensus 178 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~--vlllDEPts~LD~~~r~~~ 255 (605)
.. ++.+.+...........+++..|+.+..++.+.+| ++||++||||++.+|+ ++.|| |+++.+ +
T Consensus 170 ~~---~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 170 AA---LAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp HH---HHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred HH---HHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 11 11111110000000001223344444334444444 4899999999999999 56666 555544 4
Q ss_pred HHHHHHhhcC-CcEEEEEecCHh
Q 040300 256 AQVVRSLLRP-NSYVIVVEHDLS 277 (605)
Q Consensus 256 ~~~i~~l~~~-g~tvivvsHdl~ 277 (605)
.+.++++.+. +.|+|++||+..
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHcCCcEEEEECCcc
Confidence 5566666544 899999999843
No 188
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.54 E-value=3e-15 Score=172.36 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=84.6
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCC-CCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhh
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLK-PNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQ 181 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 181 (605)
|++++|+||||||||||+|+|+|+.. |..|.+.. ... . ...+++++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp--a~~--------~------------------~i~~v~~i~---- 623 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP--AEE--------A------------------HLPLFDGIY---- 623 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS--SSE--------E------------------EECCCSEEE----
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee--hhc--------c------------------ceeeHHHhh----
Confidence 99999999999999999999999864 56675421 000 0 001111110
Q ss_pred chhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHH
Q 040300 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA--VQNAEIYMFDEP---SSYLDVKQR-LKA 255 (605)
Q Consensus 182 ~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL--~~~p~vlllDEP---ts~LD~~~r-~~~ 255 (605)
..++..+ .....+|+|++|++.+|+++ +.+|+++||||| ||+||..++ ..+
T Consensus 624 --------------------~~~~~~d---~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i 680 (765)
T 1ewq_A 624 --------------------TRIGASD---DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAV 680 (765)
T ss_dssp --------------------EECCC---------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHH
T ss_pred --------------------ccCCHHH---HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHH
Confidence 0111111 11235799999999999999 999999999999 999998875 356
Q ss_pred HHHHHHhhcCCcEEEEEecCHhHHH
Q 040300 256 AQVVRSLLRPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 256 ~~~i~~l~~~g~tvivvsHdl~~l~ 280 (605)
.+.|.+ .|.++|++||+.++..
T Consensus 681 ~~~L~~---~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 681 AEALHE---RRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHH---HTCEEEEECCCHHHHT
T ss_pred HHHHHh---CCCEEEEEeCCHHHHH
Confidence 666655 4899999999988765
No 189
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.53 E-value=1.2e-16 Score=154.40 Aligned_cols=145 Identities=16% Similarity=0.148 Sum_probs=86.4
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhc
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG 182 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 182 (605)
|++++|+|+||||||||+++|+|+++ +.| +.. .|...+.... . .-...+.+|.. .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~-----------~g~~~~~~~~--~--~~~ig~~~~~~-------~g 56 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPV-----------DGFYTEEVRQ--G--GRRIGFDVVTL-------SG 56 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCC-----------EEEECCEEET--T--SSEEEEEEEET-------TS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEE-----------cCEecchhHh--h--hceEEEEEEec-------cc
Confidence 78999999999999999999999998 888 631 1111100000 0 00000111111 00
Q ss_pred hhhhhcCchHHHHHHHHHHhhcCC--c-----hhhcccCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCH
Q 040300 183 NVGQVLDQKDERDMKADLCTDLDL--N-----QVIDRNVGDLSGGELQRF-AIAV---VAVQNAEIYMFDE--PSSYLDV 249 (605)
Q Consensus 183 ~v~~~l~~~~~~~~~~~~l~~l~L--~-----~~~dr~v~~LSGGe~QRv-aIA~---aL~~~p~vlllDE--Pts~LD~ 249 (605)
. ... +..++. . ....++...+|+||++++ ++++ |++.+|++||+|| |++.+|+
T Consensus 57 ~-~~~-------------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~ 122 (189)
T 2i3b_A 57 T-RGP-------------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122 (189)
T ss_dssp C-EEE-------------EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCS
T ss_pred c-eeh-------------hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccH
Confidence 0 000 111111 1 133455667999999998 4454 5899999999999 8999998
Q ss_pred HHHHHHHHHHHHhhcCCcEEE----EEecCH--hHHHhhcC----EEEEE
Q 040300 250 KQRLKAAQVVRSLLRPNSYVI----VVEHDL--SVLDYLSD----FICCL 289 (605)
Q Consensus 250 ~~r~~~~~~i~~l~~~g~tvi----vvsHdl--~~l~~~~D----~i~vl 289 (605)
.... .|.++.+...++| .|+||. .+++.+++ +|+.+
T Consensus 123 ~~~~----~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 123 LFIQ----AVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HHHH----HHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEEC
T ss_pred HHHH----HHHHHHhCCCcEEEEEeecCCCCchHHHHHHeecCCcEEEEe
Confidence 7544 4444444444555 345986 67777665 55555
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.53 E-value=5.6e-15 Score=143.14 Aligned_cols=179 Identities=17% Similarity=0.156 Sum_probs=97.0
Q ss_pred CceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCC-----CCCCceeeCCCC--hhh--hhhhhccchh
Q 040300 82 DTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKL-----KPNLGRFNNPPD--WQE--ILTYFRGSEL 152 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l-----~p~~G~i~~~~~--~~~--~~~~~~g~~l 152 (605)
+++++|+. ..+.+++ +.+|.+++|+|+||+|||||++.|+|.. .|+.|....... +.. .+....|...
T Consensus 8 ~~~~~~~~--~~l~~~~-~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 8 QTHFVMSA--PDIRHLP-SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp ---CEEEE--SSGGGSS-CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred hhhheeec--CCHhHCC-CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 34556752 3455544 3689999999999999999999999998 777776431000 000 0000112110
Q ss_pred hhh---HHHHHHHHHHHhhc-ccccccchhhhhchhhhhcC-chHHHHHHHHHHhhcCCchh-hcccCCCCChHHHHH-H
Q 040300 153 QNY---FTRILEDNLKAIIK-PQYVDHIPKAVQGNVGQVLD-QKDERDMKADLCTDLDLNQV-IDRNVGDLSGGELQR-F 225 (605)
Q Consensus 153 ~~~---~~~~~~~~~~~~~~-~q~~~~~~~~~~~~v~~~l~-~~~~~~~~~~~l~~l~L~~~-~dr~v~~LSGGe~QR-v 225 (605)
... ....+...+...+. ....+.+. + +.+.-. .......+.+++...++..+ ...++..+|+||+|| +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~ 159 (210)
T 1pui_A 85 AEVPEEMKRKWQRALGEYLEKRQSLQGLV--V---LMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQL 159 (210)
T ss_dssp -----CCHHHHHHHHHHHHHHCTTEEEEE--E---EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhhhcccEEE--E---EEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHH
Confidence 000 00000000101000 00000000 0 000000 01122345566677787654 477889999999999 8
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcE
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY 268 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~t 268 (605)
+++++++.+|.++++|||||+||...+.++++.|.++..++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 160 NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999988765543
No 191
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.50 E-value=3.2e-15 Score=173.02 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=82.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCC-CCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP-NLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
.+|++++|+||||||||||+|+|+|+..+ ..|.+. | ... ....+++++
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v--p----------a~~----------------~~i~~~~~i--- 653 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV--P----------AQK----------------VEIGPIDRI--- 653 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB--S----------SSE----------------EEECCCCEE---
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc--c----------hhc----------------ccceeHHHH---
Confidence 58999999999999999999999996421 122110 0 000 000011110
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKA-AQV 258 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~-~~~ 258 (605)
+..++..+.+....+++|+++++ ++.+..++.+|+++|||||++|+|+.....+ ..+
T Consensus 654 ---------------------~~~~~~~d~l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~l 711 (800)
T 1wb9_A 654 ---------------------FTRVGAADDLASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWAC 711 (800)
T ss_dssp ---------------------EEEEC-----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHH
T ss_pred ---------------------HhhCCHHHHHHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 11122222223344567777764 4555557899999999999999998777665 678
Q ss_pred HHHhhc-CCcEEEEEecCHhHHHhhcCEE
Q 040300 259 VRSLLR-PNSYVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 259 i~~l~~-~g~tvivvsHdl~~l~~~~D~i 286 (605)
++.+.+ .|.++|++|||.++.. ++|++
T Consensus 712 l~~l~~~~g~~vl~~TH~~el~~-l~d~~ 739 (800)
T 1wb9_A 712 AENLANKIKALTLFATHYFELTQ-LPEKM 739 (800)
T ss_dssp HHHHHHTTCCEEEEECSCGGGGG-HHHHS
T ss_pred HHHHHhccCCeEEEEeCCHHHHH-Hhhhh
Confidence 888877 4999999999997654 67654
No 192
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.48 E-value=5.3e-15 Score=156.42 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 226 AIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
+||+||.++|+++|+|||| |... ++.+.+++..|.+||+++|+.+.+ ..+||++.|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHH-HHHHHHhhhc
Confidence 9999999999999999999 6554 445455566799999999999988 5789998874
No 193
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.47 E-value=3.2e-15 Score=149.78 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=87.3
Q ss_pred eeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcc
Q 040300 92 FKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKP 170 (605)
Q Consensus 92 f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 170 (605)
..|.+++ .+.+|+++||+|+||||||||+++|+|++ |.+... .....+.++....+....+ ..+...... .
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~~~~~l~--~~~~~~~~~-~ 84 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDRFYKVLT--AEQKAKALK-G 84 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGGGBCCCC--HHHHHHHHT-T
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCcCccccC--HhHhhhhhc-c
Confidence 3466666 46799999999999999999999999976 432110 0000000000000000000 000111000 0
Q ss_pred cccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 040300 171 QYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK 250 (605)
Q Consensus 171 q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~ 250 (605)
.+....+. ......+.+.++.+ .+..++.+..||+||+||+++ ++++.+|+++|||||...++..
T Consensus 85 ~~~~~~~~------------~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 85 QYNFDHPD------------AFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CCCTTSGG------------GBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred CCCCCCcc------------cccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 00000000 00122333444443 455678899999999999988 5888999999999999888863
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEecCHhHH-HhhcCEE
Q 040300 251 QRLKAAQVVRSLLRPNSYVIVVEHDLSVL-DYLSDFI 286 (605)
Q Consensus 251 ~r~~~~~~i~~l~~~g~tvivvsHdl~~l-~~~~D~i 286 (605)
+.++ .+.+|++++|+...+ ..+++.+
T Consensus 150 --------l~~~--~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 150 --------IRDM--FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp --------HHTT--CSEEEEEECCHHHHHHHHHHHHT
T ss_pred --------HHHh--cCeEEEEECCHHHHHHHHHHHHH
Confidence 2333 378999999974444 4444443
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.47 E-value=1e-15 Score=158.53 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=51.7
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHHHHHhhcC-CcEEEEEecCHh
Q 040300 208 QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY-LDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLS 277 (605)
Q Consensus 208 ~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~-LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~ 277 (605)
+..++++.++|||+|||+++|+|++ ++++||||++ ||+... ++++++.+. +.++|+.+||+.
T Consensus 105 ~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 105 EQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 4467889999999999999999886 9999999985 999863 566666654 788999999985
No 195
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.47 E-value=1.2e-14 Score=164.33 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=82.3
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCC-Ceeeee--cccc----------CcceeEeecCcCCCCCcCcHHHHHHhhhccCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKP-DSVEDS--DVEI----------PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSY 442 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p-~~G~i~--~~~~----------~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~ 442 (605)
.++|+||||||||||+++|+|+..| ++|.+. +..+ ....++|++|+.......+|.+++...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~----- 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA----- 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----
Confidence 3899999999999999999999989 788864 1110 123589999986655556776655321
Q ss_pred CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecC------CCCCCHHHHHHHHHHHHHHHhc
Q 040300 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEP------SAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEP------t~~LD~~~~~~l~~~l~~l~~~ 516 (605)
...+...+ ..+| .+++.++.+....|+++|+||| |++||+..+..+.+++++++.+
T Consensus 122 ------~~~~~~~~---------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~ 183 (608)
T 3szr_A 122 ------QNAIAGEG---------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR 183 (608)
T ss_dssp ------HHHHHCSS---------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS
T ss_pred ------HHHhcCCc---------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc
Confidence 01110000 0011 1223333344568999999999 9999999999999999997543
Q ss_pred -CCcEEEEEecCHH
Q 040300 517 -AKKTAFVVEHDFI 529 (605)
Q Consensus 517 -~g~tiivvsHD~~ 529 (605)
.+.++++++||++
T Consensus 184 ~~~iil~vvt~~~d 197 (608)
T 3szr_A 184 QETISLVVVPSNVD 197 (608)
T ss_dssp SSCCEEEEEESSSC
T ss_pred CCCCceEEEeccch
Confidence 4678899999965
No 196
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.46 E-value=2.7e-15 Score=150.21 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=92.9
Q ss_pred CeEEEEEecCCCCHHHHHHHHH---cCCCCCeeeeec--cccC---cceeEeecCcCCCCCcCcHHHHHHhhh-------
Q 040300 374 SQIIVMLGENGTGKTTFIRMLA---GLLKPDSVEDSD--VEIP---EFNVSYKPQKISPKFQSTVRHLLHQKI------- 438 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~---Gl~~p~~G~i~~--~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~------- 438 (605)
+++++|+||||||||||+++|+ |+..|+.|.+.. .... ...+.+++|+....+..++.+++....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~ 106 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH 106 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 4789999999999999999999 999999887641 1110 112344455543344456666553311
Q ss_pred --ccCC-CCHHHHHHHH--hhcC------------CchhhccCcCcCChhHHHHHHHHHHH-ccCCCEEEEe----cCCC
Q 040300 439 --RDSY-THPQFVSDVM--KPLL------------IEQLMDQEVVNLSGGELQRVALCLCL-GKPADIYLID----EPSA 496 (605)
Q Consensus 439 --~~~~-~~~~~~~~~l--~~l~------------l~~~~~~~~~~LSGGe~QRvaiA~aL-~~~p~lllLD----EPt~ 496 (605)
...+ .....+..+. ..++ +..+.++.+.+||| || ++| +.+|++++|| |||+
T Consensus 107 ~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~ 179 (246)
T 2bbw_A 107 WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLV 179 (246)
T ss_dssp EEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCB
T ss_pred EEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccc
Confidence 0111 1222223332 2333 45567888999999 66 677 9999999999 9999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 040300 497 YLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 497 ~LD~~~~~~l~~~l~~l~~ 515 (605)
+||..++..+.+.|+++.+
T Consensus 180 ~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 180 QQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp CCGGGSHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHH
Confidence 9999999999999998854
No 197
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=4.9e-13 Score=132.37 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=85.5
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHc--CCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAG--LLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~G--l~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
|-+.+|++++|+||||||||||++.|++ +.+|+.|. ....+-|+.-.... ....+.+... .. .+ ..+
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~------~~~~~~~i~~~~~~-~~~~~~~~~~-~~--g~-~~~ 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGG------GEGKAMYIDTEGTF-RPERLLAVAE-RY--GL-SGS 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTC------CSSEEEEEESSSCC-CHHHHHHHHH-HT--TC-CHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCC------CCCeEEEEECCCCc-CHHHHHHHHH-Hc--CC-CHH
Confidence 5678889999999999999999999999 56553221 01123344322110 0001111111 11 11 111
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhHHHHH-HHHHHH--ccCCCEEEEecCCCCCCHH-------H-----HHHHHHHHH
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGELQRV-ALCLCL--GKPADIYLIDEPSAYLDSE-------Q-----RIVAAKVIK 511 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe~QRv-aiA~aL--~~~p~lllLDEPt~~LD~~-------~-----~~~l~~~l~ 511 (605)
++++.+. ....++..+...+ .-+..+ ..+|+++++|||++.+|.. . ...++..|+
T Consensus 88 ---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~ 157 (243)
T 1n0w_A 88 ---DVLDNVA-------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLL 157 (243)
T ss_dssp ---HHHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHH
T ss_pred ---HHhhCeE-------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 1222211 1233555554432 222223 3589999999999999985 2 345666677
Q ss_pred HHHhcCCcEEEEEecCHHHHHh-------------------hcCEEEEEeC
Q 040300 512 RFILHAKKTAFVVEHDFIMATY-------------------LADRVIVYEG 543 (605)
Q Consensus 512 ~l~~~~g~tiivvsHD~~~~~~-------------------~adrviv~~g 543 (605)
+++++.+.|||+++|....... +||++++++.
T Consensus 158 ~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 158 RLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp HHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred HHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 7766679999999997655433 7999999873
No 198
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.45 E-value=5.4e-14 Score=148.72 Aligned_cols=86 Identities=17% Similarity=0.071 Sum_probs=74.4
Q ss_pred ccCcC-cCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q 040300 462 DQEVV-NLSGGELQRVALCLCLG---------KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 462 ~~~~~-~LSGGe~QRvaiA~aL~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~ 531 (605)
++++. .|||||||||+||++|+ .+|+||||||||++||+..+..+++.|.++ +.|+|++||+ +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~qt~i~~th~-~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----PQAIVTGTEL-AP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----SEEEEEESSC-CT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----CcEEEEEEec-cc-
Confidence 56677 89999999999999999 899999999999999999999999999886 2799999995 43
Q ss_pred HhhcCEEEEEeCCcceeeecCChhhh
Q 040300 532 TYLADRVIVYEGQPSVDCVANAPQSL 557 (605)
Q Consensus 532 ~~~adrviv~~g~~~~~~~~~~p~~~ 557 (605)
.||++++++++.. ...++|+++
T Consensus 333 --~~~~i~~l~~G~i--~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRF--TPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEE--EECCCTTTS
T ss_pred --cCCEEEEEECCEE--EecCCHHHH
Confidence 8999999986543 356777776
No 199
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=2.9e-13 Score=144.05 Aligned_cols=78 Identities=32% Similarity=0.489 Sum_probs=69.7
Q ss_pred ccCCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcC
Q 040300 212 RNVGDLSGGELQRF------AIAVVAVQN-AEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSD 284 (605)
Q Consensus 212 r~v~~LSGGe~QRv------aIA~aL~~~-p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D 284 (605)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|+++.+ +.+||+|||+.+ +..+||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~-~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE-LEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG-GGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH-HHhhCC
Confidence 67789999999988 567888999 999999999999999999999999999754 578999999987 578999
Q ss_pred EEEEEeC
Q 040300 285 FICCLYG 291 (605)
Q Consensus 285 ~i~vl~g 291 (605)
+++++..
T Consensus 354 ~~~~l~k 360 (371)
T 3auy_A 354 VIINVKK 360 (371)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999963
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.44 E-value=1.7e-14 Score=142.55 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred eeecCeEEEEEecCCCCHHHHHHHHHcCCCC--Ceeeeec--cccC---cceeEeecCcCCCCCcCcHHHHHHhhhccCC
Q 040300 370 EFTDSQIIVMLGENGTGKTTFIRMLAGLLKP--DSVEDSD--VEIP---EFNVSYKPQKISPKFQSTVRHLLHQKIRDSY 442 (605)
Q Consensus 370 ~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p--~~G~i~~--~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~ 442 (605)
.+++|++++|+||||||||||+++|+|+.+| ..|.+.. .... ...++|++|.......+++ ...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~--------~~~f 83 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS--------RDAF 83 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH--------TTCE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHh--------cCHH
Confidence 4566789999999999999999999999986 5666531 1110 1236666664211000011 0000
Q ss_pred CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 040300 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522 (605)
Q Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tii 522 (605)
++.+.+ ...+.|-.+++ +..++..++++||| ||+..+..+.+.+. .+.||+
T Consensus 84 ---------~E~~~~-------~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~ 134 (219)
T 1s96_A 84 ---------LEHAEV-------FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIF 134 (219)
T ss_dssp ---------EEEEEE-------TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEE
T ss_pred ---------HHHHHH-------HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEE
Confidence 000000 00011111221 23334457999999 99999998887754 389999
Q ss_pred EEecCHHHHHhhcCEEEEEeCCcceeeecCChhhhhccc
Q 040300 523 VVEHDFIMATYLADRVIVYEGQPSVDCVANAPQSLLTGM 561 (605)
Q Consensus 523 vvsHD~~~~~~~adrviv~~g~~~~~~~~~~p~~~~~~~ 561 (605)
++|||++++.. |+ +..+ .++++++...+
T Consensus 135 i~th~~~~l~~---Rl--~~rG------~~~~e~i~~rl 162 (219)
T 1s96_A 135 ILPPSKIELDR---RL--RGRG------QDSEEVIAKRM 162 (219)
T ss_dssp EECSSHHHHHH---HH--HTTS------CSCHHHHHHHH
T ss_pred EECCCHHHHHH---HH--HHcC------CCCHHHHHHHH
Confidence 99999998765 32 2221 35677776543
No 201
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.43 E-value=3.5e-15 Score=158.39 Aligned_cols=164 Identities=17% Similarity=0.146 Sum_probs=95.4
Q ss_pred cCC-CCCC--CcEEEEECCCCChHHHHHHHHhcCCCCCC----ceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhh
Q 040300 96 RLP-VPRP--GQVLGLVGTNGIGKSTALKILAGKLKPNL----GRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAII 168 (605)
Q Consensus 96 ~l~-~~~~--Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~----G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 168 (605)
.+| .+.+ |++++|+|+||||||||+++|+|++.|+. |++.. . ....|.++....... ..+..
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i----~---~~~~~~~~~~~~~~~--~~I~~-- 228 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV----F---EKLGGDEQAMQYSDY--PQMAL-- 228 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH----H---HSSSSCTTSSCTTTH--HHHHH--
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH----H---hhcCCCcccCChhHH--HHHHH--
Confidence 355 4678 99999999999999999999999999988 55320 0 000111110000000 00100
Q ss_pred cccccccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc-cCCCEEEEeC---CC
Q 040300 169 KPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV-QNAEIYMFDE---PS 244 (605)
Q Consensus 169 ~~q~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~-~~p~vlllDE---Pt 244 (605)
.+|. +..+..++.+.+ ..++ .+..++.+..+|+|++|+..+++++. .+|+++|||| |+
T Consensus 229 ~~q~----~~~~~~t~~~nl-------------~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 229 GHQR----YIDYAVRHSHKI-------------AFID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp HHHH----HHHHHHHHCSSE-------------EEES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred HHHH----HHHHHHhccCCE-------------EEEe-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 0110 000000111100 0001 11223334456677788888888774 6999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 245 ------SYLDVKQRLKAAQVVRSLLR-PNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 245 ------s~LD~~~r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
+++|+.+|..+++.|+++.+ .+.+||+++|. ...+.+++++.++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 58999999999999988765 38899999986 4556666665544
No 202
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.43 E-value=2.2e-13 Score=144.94 Aligned_cols=77 Identities=27% Similarity=0.407 Sum_probs=68.5
Q ss_pred cCcCcCChhHHHHH------HHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q 040300 463 QEVVNLSGGELQRV------ALCLCLGKP-ADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLA 535 (605)
Q Consensus 463 ~~~~~LSGGe~QRv------aiA~aL~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~a 535 (605)
+++..|||||+||| ++|++|+.+ |++|||||||++||+..+..+.+.|+++ . .+.+||+||||.+ +..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~-~~~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-K-SIPQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-C-SCSEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-c-cCCeEEEEEChHH-HHhhC
Confidence 67789999999988 557888999 9999999999999999999999999986 3 2568999999987 56789
Q ss_pred CEEEEEe
Q 040300 536 DRVIVYE 542 (605)
Q Consensus 536 drviv~~ 542 (605)
|++++++
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 203
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.42 E-value=3.1e-15 Score=158.80 Aligned_cols=157 Identities=12% Similarity=0.151 Sum_probs=94.8
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCe----eeeecc-ccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDS----VEDSDV-EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~----G~i~~~-~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|++++|+||||||||||+++|+|+++|++ |.+... ..... ...... ........ .... . ..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-------~~~~~~-~~~~~I~~-~~q~-~--~~~~ 237 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-------EQAMQY-SDYPQMAL-GHQR-Y--IDYA 237 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-------TTSSCT-TTHHHHHH-HHHH-H--HHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-------cccCCh-hHHHHHHH-HHHH-H--HHHH
Confidence 47899999999999999999999999998 543200 00000 000000 01111110 0000 0 0011
Q ss_pred HHHHhhcCC--chhhccCcCcCChhHHHHHHHHHHH-ccCCCEEEEec---CC------CCCCHHHHHHHHHHHHHHHhc
Q 040300 449 SDVMKPLLI--EQLMDQEVVNLSGGELQRVALCLCL-GKPADIYLIDE---PS------AYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 449 ~~~l~~l~l--~~~~~~~~~~LSGGe~QRvaiA~aL-~~~p~lllLDE---Pt------~~LD~~~~~~l~~~l~~l~~~ 516 (605)
..+.+.+-+ .+..+..+..+|+|++|+..+++++ ..+|+++|||| |+ .++|..+|..+.++|+++.++
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 111111111 1223334556778888888888877 46999999999 65 589999999999999988666
Q ss_pred CCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 517 AKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 517 ~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
.+.++++++|. ..+.++++++.+++.
T Consensus 318 ~~~~ililde~-~~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 318 YKVPYIEIESP-SYLDRYNQVKAVIEK 343 (365)
T ss_dssp GGCCCEEEECS-SHHHHHHHHHHHHHH
T ss_pred cCCCEEEeCCC-CHHHHHHHHHHHHHH
Confidence 68999999986 466677877776653
No 204
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.42 E-value=4.1e-13 Score=145.57 Aligned_cols=80 Identities=25% Similarity=0.257 Sum_probs=71.1
Q ss_pred hccCcCcCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcC
Q 040300 461 MDQEVVNLSGGELQRVALCLCLG----KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLAD 536 (605)
Q Consensus 461 ~~~~~~~LSGGe~QRvaiA~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ad 536 (605)
..+++..||||||||++||++|+ .+|++|||||||++||+..+..+.++|+++.. .+.++|+|||+..++ ..||
T Consensus 327 ~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~-~~~d 404 (430)
T 1w1w_A 327 RFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMF-EKSD 404 (430)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHH-TTCS
T ss_pred cccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHH-HhCC
Confidence 34678899999999999999999 58999999999999999999999999999743 478999999997664 5799
Q ss_pred EEEEEe
Q 040300 537 RVIVYE 542 (605)
Q Consensus 537 rviv~~ 542 (605)
+++++.
T Consensus 405 ~~~~~~ 410 (430)
T 1w1w_A 405 ALVGVY 410 (430)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999885
No 205
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.40 E-value=5.7e-13 Score=144.45 Aligned_cols=79 Identities=25% Similarity=0.377 Sum_probs=70.9
Q ss_pred ccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 212 RNVGDLSGGELQRFAIAVVAV----QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 212 r~v~~LSGGe~QRvaIA~aL~----~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
+++..|||||+||++||++|+ .+|++|||||||++||+..+..+.++|+++.+.+.++|+|||+...+ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 455679999999999999999 58999999999999999999999999999876688999999997665 5799999
Q ss_pred EEeC
Q 040300 288 CLYG 291 (605)
Q Consensus 288 vl~g 291 (605)
+++.
T Consensus 408 ~~~~ 411 (430)
T 1w1w_A 408 GVYR 411 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9963
No 206
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.39 E-value=1.2e-14 Score=139.20 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=81.0
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----C-cceeEeecCcCCCCCcCcHHHHHHhhhcc--C
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----P-EFNVSYKPQKISPKFQSTVRHLLHQKIRD--S 441 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~-~~~i~y~~q~~~~~~~~tv~~~~~~~~~~--~ 441 (605)
+.+|++++|+||||||||||+++|+|. |+.|.+. +... . ...++|++|... ...++.+++...... .
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhc
Confidence 445689999999999999999999998 6667543 1111 1 112456666432 234565554321000 0
Q ss_pred CCCHHHHHHHHhhcCCchhh--ccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q 040300 442 YTHPQFVSDVMKPLLIEQLM--DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513 (605)
Q Consensus 442 ~~~~~~~~~~l~~l~l~~~~--~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 513 (605)
......++.++..+++..+. +.++..+|+|++||+++||++.++|+++ +|+..+..+.+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 82 EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 00000001122223444433 5567899999999999999999999876 6888777777766654
No 207
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.38 E-value=9.2e-14 Score=146.68 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=81.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCC--CCCC----ceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhccccc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKL--KPNL----GRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYV 173 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l--~p~~----G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~ 173 (605)
+.+|++++|+|+||||||||++.|+|.. +|+. |++- ++.+.+... . ..+... +|..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi----------~i~~e~~~~--~----~~i~~i--~q~~ 189 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI----------WIDTENTFR--P----ERIREI--AQNR 189 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEE----------EEESSSCCC--H----HHHHHH--HHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEE----------EEeCCCCCC--H----HHHHHH--HHHc
Confidence 4689999999999999999999999998 6766 3411 122221100 0 000000 0100
Q ss_pred ccchhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCCCCC
Q 040300 174 DHIPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV-------QNAEIYMFDEPSSY 246 (605)
Q Consensus 174 ~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~-------~~p~vlllDEPts~ 246 (605)
...+. .+++.+-+.. . .-|.+++|++.++++++ .+|+++|+||||+.
T Consensus 190 ~~~~~--------------------~v~~ni~~~~----~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 190 GLDPD--------------------EVLKHIYVAR----A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp TCCHH--------------------HHGGGEEEEE----C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred CCCHH--------------------HHhhCEEEEe----c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 00000 1111111110 0 01567777888887777 68999999999999
Q ss_pred CCHH--------H----HHHHHHHHHHhhc-CCcEEEEEecCHhHHHh
Q 040300 247 LDVK--------Q----RLKAAQVVRSLLR-PNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 247 LD~~--------~----r~~~~~~i~~l~~-~g~tvivvsHdl~~l~~ 281 (605)
||+. + ...++..|+++++ .+.|||+++|.....+.
T Consensus 244 ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~ 291 (349)
T 1pzn_A 244 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDA 291 (349)
T ss_dssp HHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccccc
Confidence 9985 2 3455666666665 48999999998775543
No 208
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.37 E-value=1.8e-12 Score=128.21 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=38.6
Q ss_pred cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHhhcC-CcEEEEEecCHhHHH-------------------
Q 040300 233 QNAEIYMFDEPSSYLDVK-------Q-----RLKAAQVVRSLLRP-NSYVIVVEHDLSVLD------------------- 280 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~-------~-----r~~~~~~i~~l~~~-g~tvivvsHdl~~l~------------------- 280 (605)
.+|+++++|||++.+|.. . ...++..|.+++++ |.|||+++|......
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999974 2 34455556666554 999999999766543
Q ss_pred hhcCEEEEEe
Q 040300 281 YLSDFICCLY 290 (605)
Q Consensus 281 ~~~D~i~vl~ 290 (605)
++||.+++|+
T Consensus 198 ~~~d~vi~l~ 207 (243)
T 1n0w_A 198 HASTTRLYLR 207 (243)
T ss_dssp CTTCEEEEEE
T ss_pred hcCcEEEEEE
Confidence 3788888886
No 209
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.37 E-value=2.9e-13 Score=130.97 Aligned_cols=146 Identities=10% Similarity=0.055 Sum_probs=86.3
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCC-----CCCeeeeeccc---c-CcceeEeecCcC----CCC----CcCcHHHH
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLL-----KPDSVEDSDVE---I-PEFNVSYKPQKI----SPK----FQSTVRHL 433 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~-----~p~~G~i~~~~---~-~~~~i~y~~q~~----~~~----~~~tv~~~ 433 (605)
+.+|++++|+|+||+|||||++.|+|.. .|+.|...... . ....+--.|-.. ... +...+..+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 3445789999999999999999999998 77777642100 0 011110001000 000 00001111
Q ss_pred HHh--hhc------c-CC-CCH--HHHHHHHhhcCCchh-hccCcCcCChhHHHH-HHHHHHHccCCCEEEEecCCCCCC
Q 040300 434 LHQ--KIR------D-SY-THP--QFVSDVMKPLLIEQL-MDQEVVNLSGGELQR-VALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 434 ~~~--~~~------~-~~-~~~--~~~~~~l~~l~l~~~-~~~~~~~LSGGe~QR-vaiA~aL~~~p~lllLDEPt~~LD 499 (605)
+.. ... . .. ... ....++++..++..+ ...++..+|+||+|| +..+++++.+|.++++|||||++|
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~ 182 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLK 182 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTT
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecC
Confidence 110 000 0 00 111 233455666676643 366788999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 040300 500 SEQRIVAAKVIKRFILH 516 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~ 516 (605)
.....++.+.|.++..+
T Consensus 183 ~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 183 KQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TBSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999997543
No 210
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.36 E-value=2e-13 Score=145.37 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=82.1
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCC-eeeeeccccC-----cceeEeecCcCCCCCcCcHHHHHHhhhccCCCC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPD-SVEDSDVEIP-----EFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTH 444 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~-~G~i~~~~~~-----~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~ 444 (605)
+.+|++++|+||||||||||+++|+|+++|+ +|.+.....+ ...++|++|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~----------------------- 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR----------------------- 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE-----------------------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee-----------------------
Confidence 3455899999999999999999999999987 7876311100 1122333331
Q ss_pred HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 040300 445 PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524 (605)
Q Consensus 445 ~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivv 524 (605)
.+++ .+..| +.+|+++|.++|+++++|||+ |.+... .+++.. +.|.+++.+
T Consensus 190 ---------~~g~------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~--~~g~~vi~t 240 (372)
T 2ewv_A 190 ---------EVGE------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA--ETGHLVFGT 240 (372)
T ss_dssp ---------EBTT------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH--TTTCEEEEC
T ss_pred ---------ecCC------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH--hcCCEEEEE
Confidence 1122 12344 469999999999999999999 776533 345543 358899999
Q ss_pred ecCHHHHHhhcCEEEEE
Q 040300 525 EHDFIMATYLADRVIVY 541 (605)
Q Consensus 525 sHD~~~~~~~adrviv~ 541 (605)
+|+.+ +...+||++.|
T Consensus 241 ~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 241 LHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp CCCCS-HHHHHHHHHHT
T ss_pred ECcch-HHHHHHHHHHh
Confidence 99955 66778887655
No 211
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.36 E-value=2.5e-16 Score=150.95 Aligned_cols=168 Identities=10% Similarity=0.019 Sum_probs=97.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-CcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHH
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSD 450 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 450 (605)
|++++|+||||||||||+++|++ |.+|.+. +... .....++++|........++.+++.......... ....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~ 76 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLA--QNDV 76 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhc--CCcE
Confidence 57899999999999999999997 5556442 1111 1123456666432212234554432211000000 0000
Q ss_pred HHhhcCCchhhccCcCcC--ChhHHHHHHHHH------HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 040300 451 VMKPLLIEQLMDQEVVNL--SGGELQRVALCL------CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAF 522 (605)
Q Consensus 451 ~l~~l~l~~~~~~~~~~L--SGGe~QRvaiA~------aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tii 522 (605)
+++.+.. ....+.+..+ |+|++|++.++. +|..+|....+|+ +||+..+.. ++.++.+. +.+.++|
T Consensus 77 ild~~~~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii 150 (189)
T 2bdt_A 77 VLDYIAF-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFY 150 (189)
T ss_dssp EEESCCC-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEE
T ss_pred EEeeccC-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEE
Confidence 1111111 1111223345 899999988888 8888888888884 899988888 88888863 4578999
Q ss_pred EEecC-HHHHHhhcCEEEEEeCCcceeeecCChhh
Q 040300 523 VVEHD-FIMATYLADRVIVYEGQPSVDCVANAPQS 556 (605)
Q Consensus 523 vvsHD-~~~~~~~adrviv~~g~~~~~~~~~~p~~ 556 (605)
.+||. ++.+..+||+|+ +.+.. ...++|+.
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~--~~~~~~~~ 181 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRF--IFCMAGDP 181 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGG--SCC-----
T ss_pred eCCCCChhhHHHHHHHHh--hCCcE--EEeecCCc
Confidence 99998 999999999999 53322 34455544
No 212
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.34 E-value=3.2e-13 Score=141.18 Aligned_cols=169 Identities=13% Similarity=0.099 Sum_probs=104.5
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccccC-------------cceeEeecCcCCCCCcCcHHHHHHh
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEIP-------------EFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~~-------------~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
.+|++++|+||||||||||++.|+|+++|++|++. +.+.. ...+.+++|.....+..++++++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 34689999999999999999999999999998874 11111 1235688887655555677776643
Q ss_pred hhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 040300 437 KIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH 516 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 516 (605)
.....+. .-+++..|..+.....+.+||+ +++++..++.+++||.+|. . .+.+.++.+.+.
T Consensus 207 ~~~~~~d-----~vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t~-~------~~~~~~~~~~~~ 267 (328)
T 3e70_C 207 AKARGID-----VVLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALAG-N------AIVEQARQFNEA 267 (328)
T ss_dssp HHHHTCS-----EEEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGGT-T------HHHHHHHHHHHH
T ss_pred HHhccch-----hhHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHHH-H------HHHHHHHHHHHh
Confidence 2111110 0023334444433444555553 8899998888999996664 3 444556666555
Q ss_pred CCcEEEEEecCH---------HHHHhhcCEEEEEe-CCcceeeecCChhhhhc
Q 040300 517 AKKTAFVVEHDF---------IMATYLADRVIVYE-GQPSVDCVANAPQSLLT 559 (605)
Q Consensus 517 ~g~tiivvsHD~---------~~~~~~adrviv~~-g~~~~~~~~~~p~~~~~ 559 (605)
.+.|+|++||.- ..+....-.|..+. |+.......-+|+.+..
T Consensus 268 ~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~ 320 (328)
T 3e70_C 268 VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLE 320 (328)
T ss_dssp SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHH
T ss_pred cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHH
Confidence 689999999942 23333444566554 44333334445555443
No 213
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.34 E-value=6.7e-13 Score=140.34 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=67.2
Q ss_pred cccCC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHH
Q 040300 211 DRNVG-DLSGGELQRFAIAVVAV---------QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 211 dr~v~-~LSGGe~QRvaIA~aL~---------~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~ 280 (605)
++++. .|||||+||++||++|+ .+|+|||||||||+||+..+..+++.|.++. .|+|++||+ +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 56787 89999999999999999 8999999999999999999999999998874 799999994 43
Q ss_pred hhcCEEEEEeC
Q 040300 281 YLSDFICCLYG 291 (605)
Q Consensus 281 ~~~D~i~vl~g 291 (605)
.+|+++++..
T Consensus 333 -~~~~i~~l~~ 342 (359)
T 2o5v_A 333 -GAALTLRAQA 342 (359)
T ss_dssp -TCSEEEEEET
T ss_pred -cCCEEEEEEC
Confidence 8999999964
No 214
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.31 E-value=3e-15 Score=156.06 Aligned_cols=140 Identities=19% Similarity=0.110 Sum_probs=85.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC--------CCCeeeee--ccccCc----------------------ceeEee---c
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL--------KPDSVEDS--DVEIPE----------------------FNVSYK---P 419 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~--------~p~~G~i~--~~~~~~----------------------~~i~y~---~ 419 (605)
++++|+|+||||||||+++|+|+. .|+.|++. +..+.. ..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 77888763 111110 012233 2
Q ss_pred CcCCCCCcCcHHHHHHhhhccCCCCHHHH----------------HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc
Q 040300 420 QKISPKFQSTVRHLLHQKIRDSYTHPQFV----------------SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG 483 (605)
Q Consensus 420 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~----------------~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~ 483 (605)
|+..+.++.++.|+.. ...+... ..++..+++.+..++.. +||+||+||+..+++++
T Consensus 85 q~~~~~~~~~v~E~~~------l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTG------MADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEET------TCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCC------CCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEE
Confidence 3222212222211110 1111100 01223334444444433 79999999999889999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh
Q 040300 484 KPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYL 534 (605)
Q Consensus 484 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~ 534 (605)
.+|+++ ||| ..+.+.|+++. .+.+|+++||+...+..+
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGG
T ss_pred ECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHH
Confidence 999987 999 57788888863 589999999964444433
No 215
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.30 E-value=3.2e-14 Score=148.29 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=54.5
Q ss_pred HHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 200 ~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
++..+++.+..++.. +||+||+||+..+++++.+||++ ||| ..+.+.|+++. .+.+|+++||+...+
T Consensus 126 ~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 126 VIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDL 192 (318)
T ss_dssp EEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCG
T ss_pred EEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCH
Confidence 344556655554444 79999999999889999999987 998 46778888875 489999999986555
Q ss_pred HhhcC
Q 040300 280 DYLSD 284 (605)
Q Consensus 280 ~~~~D 284 (605)
+.+.|
T Consensus 193 ~~l~~ 197 (318)
T 1nij_A 193 GLLFN 197 (318)
T ss_dssp GGGSC
T ss_pred HHHhC
Confidence 55443
No 216
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=4.2e-13 Score=127.49 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=70.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHh
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK 453 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~ 453 (605)
|+.++|+||||+|||||+++|++.+.|+.|.. +.|+ +..+++... .....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~---------~~~~----------~~~~~~~~~-----------~~~~~ 87 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR---------GYFF----------DTKDLIFRL-----------KHLMD 87 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC---------CCEE----------EHHHHHHHH-----------HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe---------EEEE----------EHHHHHHHH-----------HHHhc
Confidence 47899999999999999999999987665521 1121 222322110 00000
Q ss_pred hcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q 040300 454 PLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA-YLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 454 ~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~ 528 (605)
. ++.+ -+.....+|++|+||||++ ++|+..+..+.++|.+... .++++|++||..
T Consensus 88 ~----------------~~~~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~ 143 (180)
T 3ec2_A 88 E----------------GKDT---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYS 143 (180)
T ss_dssp H----------------TCCS---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCC
T ss_pred C----------------chHH---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 0 0000 0111123899999999985 9999999999999988743 589999999975
No 217
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.29 E-value=2e-11 Score=130.81 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=89.2
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHH--HHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRM--LAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~--L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
|-+.+|+++.|+||||||||||++. ++++.+++.|. ...++-|+.-.... ....+++.. ..+ .+ ..+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg------~~~~viyid~E~~~-~~~rl~~~a-~~~--gl-~~~ 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG------GEGKCLYIDTEGTF-RPVRLVSIA-QRF--GL-DPD 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC------CSSEEEEEESSSCC-CHHHHHHHH-HHT--TC-CHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC------CCCcEEEEeCCCcc-CHHHHHHHH-HHc--CC-ChH
Confidence 5577889999999999999999994 45777665541 11233444332111 001111111 110 01 111
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhHHHHHHHHH--HH--ccCCCEEEEecCCCCCCHHHH------------HHHHHHH
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCL--CL--GKPADIYLIDEPSAYLDSEQR------------IVAAKVI 510 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~--aL--~~~p~lllLDEPt~~LD~~~~------------~~l~~~l 510 (605)
.+++.+- +.....++.++-.+++ .+ ..+|+++++|||++.+|.+.. ..+++.|
T Consensus 242 ---~vleni~--------~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 242 ---DALNNVA--------YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRAL 310 (400)
T ss_dssp ---HHHHTEE--------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHH
T ss_pred ---hHhhcEE--------EeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHH
Confidence 2222111 1222334444333332 22 257999999999999996432 5678888
Q ss_pred HHHHhcCCcEEEEEecCH-------------------HHHHhhcCEEEEEeC
Q 040300 511 KRFILHAKKTAFVVEHDF-------------------IMATYLADRVIVYEG 543 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD~-------------------~~~~~~adrviv~~g 543 (605)
++++++.+.|||+|+|.. ..+.+++|.+++|+.
T Consensus 311 ~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp HHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred HHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 888877899999999982 234677899988874
No 218
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.28 E-value=1.8e-13 Score=136.92 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=45.8
Q ss_pred CchhhcccCCCCChHHHHHHHHHHHH-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHHHhhcC
Q 040300 206 LNQVIDRNVGDLSGGELQRFAIAVVA-VQNAEIYMFD----EPSSYLDVKQRLKAAQVVRSLLRP 265 (605)
Q Consensus 206 L~~~~dr~v~~LSGGe~QRvaIA~aL-~~~p~vlllD----EPts~LD~~~r~~~~~~i~~l~~~ 265 (605)
+..+.+|.+.+||| |+ +|+ +.+|++++|| |||++||+..+..+.+.|+++.+.
T Consensus 142 l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 142 KDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp HHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 34566889999999 66 677 9999999999 999999999999999999888664
No 219
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.28 E-value=4.9e-13 Score=140.93 Aligned_cols=104 Identities=18% Similarity=0.095 Sum_probs=74.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCC-CCeeeeecc------ccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCC--
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLK-PDSVEDSDV------EIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTH-- 444 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~-p~~G~i~~~------~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~-- 444 (605)
|++++|+||||+|||||+++|+|+.. |++|.+... ......++|++|........+++++. .. ....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~---l~-~l~~~e 290 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG---LW-HLEPEQ 290 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC---CC-CCCHHH
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh---hc-CCCHHH
Confidence 47899999999999999999999999 999987421 11234688999875433334555531 11 1111
Q ss_pred -HHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHH
Q 040300 445 -PQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCL 482 (605)
Q Consensus 445 -~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL 482 (605)
...+.++++.+++..+.++.+.+|| ||+||++||+++
T Consensus 291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1234578888999999999999999 999999999864
No 220
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=3.5e-13 Score=145.18 Aligned_cols=152 Identities=13% Similarity=0.012 Sum_probs=84.4
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeee--e-c--cccCcceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED--S-D--VEIPEFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i--~-~--~~~~~~~i~y~~q~~~ 423 (605)
.+.|++. ..+++++|++ +|+|+||+|||||+++|+|...|+.|.. . . .......++|++|...
T Consensus 18 ~~~y~~~-~vl~~vsf~I-----------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 18 PNQVYRK-SVKRGFEFTL-----------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 85 (418)
T ss_dssp CCCTTTT-TCC-CCCEEE-----------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----
T ss_pred ceeECCE-EEecCCCEEE-----------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCC
Confidence 5556543 3577887764 8999999999999999999988654421 0 0 0011124677777644
Q ss_pred CCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCC---EEEEecCC-CCCC
Q 040300 424 PKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPAD---IYLIDEPS-AYLD 499 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~---lllLDEPt-~~LD 499 (605)
....+|+.++...... .........+.+ .++ ..++.+.+||++|||+++.+|+ +|++|||| ++||
T Consensus 86 ~~~~Ltv~Dt~g~~~~--~~~~~~~~~i~~------~i~---~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDA--VDNSNCWQPVID------YID---SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp -CEEEEEEECC-------------CHHHHH------HHH---HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred cccceeeeechhhhhh--ccchhhHHHHHH------HHH---HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 3333444433211100 000000011111 111 2456677889999999999999 99999999 6999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q 040300 500 SEQRIVAAKVIKRFILHAKKTAFVVEHDFI 529 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~~g~tiivvsHD~~ 529 (605)
+... .+++++. .+.++|+|.|-.+
T Consensus 155 ~~d~----~~lk~L~--~~v~iIlVinK~D 178 (418)
T 2qag_C 155 PLDI----EFMKRLH--EKVNIIPLIAKAD 178 (418)
T ss_dssp HHHH----HHHHHHT--TTSEEEEEEESTT
T ss_pred HHHH----HHHHHHh--ccCcEEEEEEccc
Confidence 8763 4555553 2677888877443
No 221
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.28 E-value=4.3e-13 Score=128.23 Aligned_cols=138 Identities=17% Similarity=0.062 Sum_probs=73.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCC-hhhhhh--hhccchhhhhH-HHHHHHHHHHhhccccccc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPD-WQEILT--YFRGSELQNYF-TRILEDNLKAIIKPQYVDH 175 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~-~~~~~~--~~~g~~l~~~~-~~~~~~~~~~~~~~q~~~~ 175 (605)
+.+|++++|+|+|||||||++++|+|. |+.|.+....+ +..... ...+...+... .....+.+..... .
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-----~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAG-----R 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHH-----H
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHH-----H
Confidence 468999999999999999999999998 67786532111 100000 00010011100 0001111100000 0
Q ss_pred chhhhhchhhhhcCchHHHHHHHHHHhhcCCchhh--cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 040300 176 IPKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVI--DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRL 253 (605)
Q Consensus 176 ~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~--dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~ 253 (605)
... .+. ... ++.++..+++..+. +.++..+|+|++|++++||++.++|+++ +|+..+.
T Consensus 79 ~~~--~~~-~~~---------~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~ 138 (191)
T 1zp6_A 79 YAK--EGY-FVI---------LDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVA 138 (191)
T ss_dssp HHH--TSC-EEE---------ECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHH
T ss_pred Hhc--cCC-eEE---------EeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHH
Confidence 000 000 000 00011112333222 4567789999999999999999999876 6888777
Q ss_pred HHHHHHHHhhc
Q 040300 254 KAAQVVRSLLR 264 (605)
Q Consensus 254 ~~~~~i~~l~~ 264 (605)
.+.+.++.+..
T Consensus 139 ~~~~~~~~l~~ 149 (191)
T 1zp6_A 139 DLHSQFADLGA 149 (191)
T ss_dssp HHHHHTTCCGG
T ss_pred HHHHHHhccCc
Confidence 77766665543
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.25 E-value=3.7e-12 Score=120.92 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhcCCcEEEEEecCHh
Q 040300 234 NAEIYMFDEPSS-YLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLS 277 (605)
Q Consensus 234 ~p~vlllDEPts-~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~ 277 (605)
+|++|+||||++ ++|+..+..+.++|.+..++++++|++||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 899999999985 89999999999999988777999999999763
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.25 E-value=2.3e-13 Score=153.75 Aligned_cols=53 Identities=9% Similarity=0.268 Sum_probs=43.0
Q ss_pred HHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCHhH
Q 040300 226 AIAVVAVQNAEIYMFDEP------SSYLDVKQRLKAAQVVRSLLRP--NSYVIVVEHDLSV 278 (605)
Q Consensus 226 aIA~aL~~~p~vlllDEP------ts~LD~~~r~~~~~~i~~l~~~--g~tvivvsHdl~~ 278 (605)
.++.+....|+++|+||| |++||+..+..+.++++++.+. +.++++++||++.
T Consensus 138 ~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 138 TLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp EEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred HHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 334444568999999999 9999999999999999997543 6789999999763
No 224
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=9.7e-13 Score=141.46 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=99.1
Q ss_pred eeecCCceeeeeeEEEEEeeceeecCeE--EEEEecCCCCHHHHHHHHHcCCCCCeeeeec---cccCcceeEeecCcCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVEGEFTDSQI--IVMLGENGTGKTTFIRMLAGLLKPDSVEDSD---VEIPEFNVSYKPQKIS 423 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~G~~~~gei--i~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~---~~~~~~~i~y~~q~~~ 423 (605)
++.|++. . +.+++|++.+| ++ ++|+||||||||||+++|+|+.- .|.... .......++|++|...
T Consensus 22 ~~~y~~~-~-L~~vsl~i~~G-----ei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 22 HVGFDSL-P-DQLVNKSVSQG-----FCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CC-CC---C-HHHHHHSCC-C-----CEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEECCe-e-cCCCceEecCC-----CeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 4556543 2 67777777776 78 99999999999999999999842 121100 0011235899999765
Q ss_pred CCCcCcHHHHHHhhhccC----CCC-----HHHHHHHHhhc-CCc----hhhccCc-----------CcCChhHHHHHHH
Q 040300 424 PKFQSTVRHLLHQKIRDS----YTH-----PQFVSDVMKPL-LIE----QLMDQEV-----------VNLSGGELQRVAL 478 (605)
Q Consensus 424 ~~~~~tv~~~~~~~~~~~----~~~-----~~~~~~~l~~l-~l~----~~~~~~~-----------~~LSGGe~QRvai 478 (605)
.....|+.+++....... +.. .....+.+... ++. ...+..+ ..|+-.+ +.|
T Consensus 93 l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 433455544432110000 000 01222334433 332 1122221 2456555 799
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q 040300 479 CLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 479 A~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~ 528 (605)
+++|..+++++++|||+..|.+.....+.+.|++-+...|.+|+.+|.|-
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 99999999999999999999999999999999974456799999999763
No 225
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.22 E-value=5.2e-12 Score=117.02 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=36.5
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcE-EEEEecC
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSY-VIVVEHD 275 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~t-vivvsHd 275 (605)
++.+|++|++|||++ ++...+..++++|..+.+.|++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 357899999999998 6665588899999998877888 8888884
No 226
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.21 E-value=2.1e-12 Score=137.46 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCC-CceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPN-LGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPK 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~ 178 (605)
+.+|++++|+||||||||||+++|+|.++|+ .|++.. .+..+. +. .. ....++.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~-----------~e~~~e-~~-------~~--~~~~~v~Q~-- 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-----------IEDPIE-YV-------FK--HKKSIVNQR-- 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE-----------EESSCC-SC-------CC--CSSSEEEEE--
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE-----------ecccHh-hh-------hc--cCceEEEee--
Confidence 4789999999999999999999999999987 788731 000000 00 00 000011100
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~ 258 (605)
.+|+. +..| +.+|+++|..+|+++++|||+ |+.+.. .+
T Consensus 190 ------------------------~~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~ 227 (372)
T 2ewv_A 190 ------------------------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TA 227 (372)
T ss_dssp ------------------------EBTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HH
T ss_pred ------------------------ecCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HH
Confidence 12221 2344 469999999999999999999 776533 34
Q ss_pred HHHhhcCCcEEEEEecCHhHHHhhcCEEEEE
Q 040300 259 VRSLLRPNSYVIVVEHDLSVLDYLSDFICCL 289 (605)
Q Consensus 259 i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl 289 (605)
++.. ..|.+|+.++|+.+ +..++|+++.|
T Consensus 228 l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 228 LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 4443 45899999999966 66678887666
No 227
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.20 E-value=1.8e-11 Score=120.76 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=35.2
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHh
Q 040300 231 AVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDY 281 (605)
Q Consensus 231 L~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~ 281 (605)
++..++++||| ||+..+..+.+.+. ++.+|++++|+++++..
T Consensus 104 ~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 104 VLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred HHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence 33457999999 99999888877664 58999999999999876
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.20 E-value=1.4e-11 Score=114.02 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHH
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVM 452 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 452 (605)
+|+.++|+||||+|||||+++|++...+. |. ++.|++.... ...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~---------~~~~~~~~~~--~~~------------------------ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK---------NAAYIDAASM--PLT------------------------ 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC---------CEEEEETTTS--CCC------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC---------cEEEEcHHHh--hHH------------------------
Confidence 34789999999999999999999988763 31 2344443210 000
Q ss_pred hhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEecC
Q 040300 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT-AFVVEHD 527 (605)
Q Consensus 453 ~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-iivvsHD 527 (605)
+++.+|++|+||||++ +|...+..+.++|+++.. .|++ +|++||.
T Consensus 79 ----------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ----------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp ----------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred ----------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence 2356899999999998 666568889999998754 4777 8888884
No 229
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.19 E-value=4.7e-11 Score=127.98 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=44.0
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHhhcC-CcEEEEEecCH-------------------hHHH
Q 040300 233 QNAEIYMFDEPSSYLDVKQR------------LKAAQVVRSLLRP-NSYVIVVEHDL-------------------SVLD 280 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r------------~~~~~~i~~l~~~-g~tvivvsHdl-------------------~~l~ 280 (605)
.+|+++++||||+.+|.... ..+++.|++++++ +.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996322 4567778888765 99999999983 2356
Q ss_pred hhcCEEEEEeC
Q 040300 281 YLSDFICCLYG 291 (605)
Q Consensus 281 ~~~D~i~vl~g 291 (605)
+++|.++.|+.
T Consensus 352 ~~ad~vl~L~~ 362 (400)
T 3lda_A 352 YSSTTRLGFKK 362 (400)
T ss_dssp HHCSEEEEEEE
T ss_pred HhcceEEEEEe
Confidence 67888888864
No 230
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.18 E-value=1.4e-11 Score=130.67 Aligned_cols=128 Identities=18% Similarity=0.125 Sum_probs=89.4
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccC-------cceeEeec-CcCCCCCcCcHH
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP-------EFNVSYKP-QKISPKFQSTVR 431 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~-------~~~i~y~~-q~~~~~~~~tv~ 431 (605)
++++|.+.+| ++++|+||||||||||+++|+|+++|++|.+...... ...++|++ |+..
T Consensus 166 ~~l~~~i~~G-----~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~-------- 232 (361)
T 2gza_A 166 SFLRRAVQLE-----RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAK-------- 232 (361)
T ss_dssp HHHHHHHHTT-----CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccc--------
Confidence 5677777666 6899999999999999999999999999987411100 11233333 1100
Q ss_pred HHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040300 432 HLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIK 511 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 511 (605)
..++++..++..|+.++.++|+.+++|||.. .++.++|+
T Consensus 233 ----------------------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~ 271 (361)
T 2gza_A 233 ----------------------------------EEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFIN 271 (361)
T ss_dssp ----------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHH
T ss_pred ----------------------------------cccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHH
Confidence 0124455688999999999999999999986 24556777
Q ss_pred HHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 512 RFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 512 ~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
.+. ....|++.++|+.. +...+||++.+..
T Consensus 272 ~l~-~g~~~~l~t~H~~~-~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 272 VAA-SGHGGSITSCHAGS-CELTFERLALMVL 301 (361)
T ss_dssp HHH-TTCCSCEEEEECSS-HHHHHHHHHHHHT
T ss_pred HHh-cCCCeEEEEECCCC-HHHHHHHHHHHHh
Confidence 763 33457899999965 7778999988764
No 231
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.18 E-value=2.3e-13 Score=129.15 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=77.5
Q ss_pred cEEEEECCCCChHHHHHHHHhcCCCCC---CceeeCCCChhhhhhhhccchhhhhH---HHHHHHHHHHhhcccccccch
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKLKPN---LGRFNNPPDWQEILTYFRGSELQNYF---TRILEDNLKAIIKPQYVDHIP 177 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~q~~~~~~ 177 (605)
++++|+|+||||||||++.|+|+++|+ .|.|... |..+.++. ...+.. ........++.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d-----------g~~i~~~~~~~~d~~r~-~~ig~~~~~~~~~~ 70 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH-----------AHGDFEIDKEGKDSWKI-YNSGADVVIASPVK 70 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----------------------CHHHHH-HHHTCEEEEECSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc-----------CcccccCCccchhHHHH-HhcCCceEEECCCc
Confidence 589999999999999999999999998 7887532 11111110 000000 01110011111111
Q ss_pred hhhhchhhhhcCchHHHHHHHHHHhh-c-CCchhhcccCCCCChHHHHHHHHHHHHccCCCEE-------EEeCCC---C
Q 040300 178 KAVQGNVGQVLDQKDERDMKADLCTD-L-DLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIY-------MFDEPS---S 245 (605)
Q Consensus 178 ~~~~~~v~~~l~~~~~~~~~~~~l~~-l-~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vl-------llDEPt---s 245 (605)
..+ +.+ ........+.++++. + +++.... ..|||||+||++||||++.+|+++ +=|.|. .
T Consensus 71 ~~~---i~~--~~~~~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 71 LAF---IRR--VSEEEGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp EEE---EEE--CCHHHHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred EEE---Eec--CChhhhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 111 000 000101134445544 3 4443332 249999999999999999999874 225543 2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCc
Q 040300 246 YLDVKQRLKAAQVVRSLLRPNS 267 (605)
Q Consensus 246 ~LD~~~r~~~~~~i~~l~~~g~ 267 (605)
.+|......++++|.+...+|.
T Consensus 143 ~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp EECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccHHHHHHHHHHHHhccC
Confidence 3455556678888877666554
No 232
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.18 E-value=1.7e-12 Score=139.74 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=90.6
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeecccc--CcceeEeecCcCCCCCcCcHHHHHHh
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEI--PEFNVSYKPQKISPKFQSTVRHLLHQ 436 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~--~~~~i~y~~q~~~~~~~~tv~~~~~~ 436 (605)
-.+++|++..| ++++|+|+||||||||+++|+|..+ . +.+... ....++++.+.... ..++.+....
T Consensus 147 ~~~i~lelk~g-----~~VgLVG~~gAGKSTLL~~Lsg~~~-~---i~~~~ftTl~p~~G~V~~~~~~--~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLI-----ADVGLVGYPNAGKSSLLAAMTRAHP-K---IAPYPFTTLSPNLGVVEVSEEE--RFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCS-----CSEEEECCGGGCHHHHHHHHCSSCC-E---ECCCTTCSSCCEEEEEECSSSC--EEEEEECCCC
T ss_pred EeeeeeEEcCC-----CEEEEECCCCCcHHHHHHHHHcCCc-c---ccCcccceecceeeEEEecCcc--eEEEEecccc
Confidence 35788988888 6899999999999999999999843 1 110010 11234555443100 0011110000
Q ss_pred --hhc-cCCCCHHHH------HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040300 437 --KIR-DSYTHPQFV------SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAA 507 (605)
Q Consensus 437 --~~~-~~~~~~~~~------~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~ 507 (605)
... .......+. ..++..+++. ++++.+||+|++|++++|++|+..|.+++| |.+|...+ ...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~ 287 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAV 287 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHH
Confidence 000 000011111 1223333443 567889999999999999999999999999 99999877 444
Q ss_pred HHHHHHHhcCCcEEEEEec
Q 040300 508 KVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 508 ~~l~~l~~~~g~tiivvsH 526 (605)
..+.+...+.+.++++||.
T Consensus 288 ~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 288 KALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEC
Confidence 5555554555777777663
No 233
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=6.5e-12 Score=135.30 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhH
Q 040300 217 LSGGELQRFAIAVVAVQNAE---IYMFDEPS-SYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSV 278 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~---vlllDEPt-s~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~ 278 (605)
++.+++||++||++++.+|+ +++||||| ++||+... .+++.|.. +.+||+|.|..+.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcccC
Confidence 45567789999999999999 99999999 69998763 45566654 7888888887554
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.17 E-value=2.2e-12 Score=140.50 Aligned_cols=147 Identities=16% Similarity=0.098 Sum_probs=91.7
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--ccc-------------CcceeEeecCcCCC
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEI-------------PEFNVSYKPQKISP 424 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~-------------~~~~i~y~~q~~~~ 424 (605)
++++|++..| ++++|+|+||||||||+++|+|+++|++|++.. ... ....++|++|+...
T Consensus 284 ~~Isl~i~~G-----eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~ 358 (503)
T 2yhs_A 284 EPLNVEGKAP-----FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA 358 (503)
T ss_dssp CCCCCCSCTT-----EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTC
T ss_pred CCceeeccCC-----eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCc
Confidence 4566766655 789999999999999999999999999888751 111 02348899998654
Q ss_pred CCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc-cCC-CEEEEecCCCCCCHHH
Q 040300 425 KFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG-KPA-DIYLIDEPSAYLDSEQ 502 (605)
Q Consensus 425 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~-~~p-~lllLDEPt~~LD~~~ 502 (605)
.+..++++++.......+. . -+++..|..+.....+.+| +|++.+++++. ..| .+||...||+|.|.-
T Consensus 359 ~p~~tV~e~l~~a~~~~~D---v--VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al- 428 (503)
T 2yhs_A 359 DSASVIFDAIQAAKARNID---V--LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV- 428 (503)
T ss_dssp CHHHHHHHHHHHHHHTTCS---E--EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-
T ss_pred CHHHHHHHHHHHHHhcCCC---E--EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH-
Confidence 4456777766432211110 0 0122222221111122334 37888888764 456 455555599887653
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEec
Q 040300 503 RIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 503 ~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
+.++.|....+.|.+++||
T Consensus 429 -----~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 429 -----SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp -----HHHHHHHHHTCCSEEEEEC
T ss_pred -----HHHHHHHhhcCCCEEEEEc
Confidence 3345554445899999999
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.16 E-value=2.2e-12 Score=134.88 Aligned_cols=147 Identities=17% Similarity=0.127 Sum_probs=79.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhh--HHH--HHHHHHHHhhcccccccc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNY--FTR--ILEDNLKAIIKPQYVDHI 176 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~--~~~--~~~~~~~~~~~~q~~~~~ 176 (605)
.+|++++|+|+|||||||+++.|+|.++|+.|++. +.|.+.... ..+ .....+...+.+|.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~-----------l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~ 195 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV-----------IAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGAD 195 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-----------EEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE-----------EEeecccccchHHHHHHHHHHcCceEEeccccCC
Confidence 58999999999999999999999999999999874 112211110 000 011111111222222222
Q ss_pred hhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 040300 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAA 256 (605)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~ 256 (605)
|.. ++.+.+........-.-+++..|+.+..++.+.+|| .|++++..++.+++||.+|. .| +.
T Consensus 196 p~~---~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~------~~ 258 (328)
T 3e70_C 196 PAA---VAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NA------IV 258 (328)
T ss_dssp HHH---HHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-TH------HH
T ss_pred HHH---HHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HH------HH
Confidence 211 111111000000000001222344333333344444 38899999999999996554 33 44
Q ss_pred HHHHHhhc-CCcEEEEEecC
Q 040300 257 QVVRSLLR-PNSYVIVVEHD 275 (605)
Q Consensus 257 ~~i~~l~~-~g~tvivvsHd 275 (605)
+.++.+.+ .+.++|++||.
T Consensus 259 ~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECG
T ss_pred HHHHHHHHhcCCCEEEEeCc
Confidence 45555553 48999999994
No 236
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.14 E-value=4.7e-14 Score=135.04 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecC-HhHHHhhcCEEE
Q 040300 218 SGGELQRFAIAV------VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHD-LSVLDYLSDFIC 287 (605)
Q Consensus 218 SGGe~QRvaIA~------aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHd-l~~l~~~~D~i~ 287 (605)
|+|++|++.++. +++.+|....+|+ +||+..+.. ++.+..+.+.+.+||.+||. ++.++.+||+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh
Confidence 888888888887 8888888888884 899988888 88888886667899999999 999999999997
No 237
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.13 E-value=2.5e-12 Score=132.18 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=78.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhh-----c-----cCCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKI-----R-----DSYT 443 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~-----~-----~~~~ 443 (605)
+.+++|+|++|||||||++.|++++.+. |. ....+.+++|+.. .+..+.++++.... . ....
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~------~~~~~~iv~~D~f-~~~~~~~~~l~~~~~~~~l~~~~g~p~a~ 102 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG------GEKSIGYASIDDF-YLTHEDQLKLNEQFKNNKLLQGRGLPGTH 102 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH-HG------GGSCEEEEEGGGG-BCCHHHHHHHHHHTTTCGGGSSSCSTTSB
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc-CC------CCceEEEeccccc-cCChHHHHHHhccccccchhhhccCcchh
Confidence 4689999999999999999999998753 20 0112344488753 34446666543211 0 0011
Q ss_pred CHHHHHHHHhhcCCc--------hhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040300 444 HPQFVSDVMKPLLIE--------QLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSE 501 (605)
Q Consensus 444 ~~~~~~~~l~~l~l~--------~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~ 501 (605)
+.....+.++.+.-. ......-..+||||+||+++|++.+.+|+|+|+|||++++|+.
T Consensus 103 d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 103 DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 233445566655332 1123445789999999999984433389999999999999985
No 238
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=9.4e-11 Score=122.83 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred EEEEECCCCChHHHHHHHHhc-CCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhhch
Q 040300 105 VLGLVGTNGIGKSTALKILAG-KLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGN 183 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G-~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 183 (605)
.+.|.||||+||||++++|+| ++.|+.|.+.. .|..+..... ........++.. .+ .+...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~-----------~~~~~~~~~~----~~~~~~~~~~~~-~~--~~~~~ 99 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI-----------DVRQFVTASN----RKLELNVVSSPY-HL--EITPS 99 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------------------CCEECSS-EE--EECCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe-----------cceeeccccc----ccceeeeecccc-eE--EecHh
Confidence 499999999999999999999 77888887631 1111110000 000000001100 00 00000
Q ss_pred hhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 040300 184 VGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263 (605)
Q Consensus 184 v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~ 263 (605)
-.........++.+.++....++.... +||| +..+|+++|+|||++ ||..+...+.+.|.+..
T Consensus 100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 100 DMGNNDRIVIQELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ----CCHHHHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred hcCCcchHHHHHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 000000001222333333333333222 5677 788999999999999 99999999999998865
Q ss_pred cCCcEEEEEecCHhHH
Q 040300 264 RPNSYVIVVEHDLSVL 279 (605)
Q Consensus 264 ~~g~tvivvsHdl~~l 279 (605)
. +.++|++||+...+
T Consensus 163 ~-~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 K-NIRLIMVCDSMSPI 177 (354)
T ss_dssp T-TEEEEEEESCSCSS
T ss_pred C-CCEEEEEeCCHHHH
Confidence 4 78999999997643
No 239
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=1.2e-10 Score=121.93 Aligned_cols=138 Identities=12% Similarity=0.201 Sum_probs=76.8
Q ss_pred EEEEecCCCCHHHHHHHHHc-CCCCCeeeeec--ccc-----CcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 377 IVMLGENGTGKTTFIRMLAG-LLKPDSVEDSD--VEI-----PEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 377 i~i~G~NGsGKSTLlk~L~G-l~~p~~G~i~~--~~~-----~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
+.|.||||+|||||+++|+| +..|+.|.+.. ... ....+++++|........+- .........
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 109 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD---------MGNNDRIVI 109 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh---------cCCcchHHH
Confidence 78999999999999999999 78888876531 000 11235566654211111000 000111112
Q ss_pred HHHHhh----cCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 040300 449 SDVMKP----LLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVV 524 (605)
Q Consensus 449 ~~~l~~----l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivv 524 (605)
.+.++. ..+.... +||| +..+|+++|||||++ ||...+..+.+.|++.. .+.++|++
T Consensus 110 ~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~ 170 (354)
T 1sxj_E 110 QELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMV 170 (354)
T ss_dssp HHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEE
T ss_pred HHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEE
Confidence 222222 2222221 5677 788999999999999 99999999999999863 37899999
Q ss_pred ecCHHHH-HhhcCEEEEEe
Q 040300 525 EHDFIMA-TYLADRVIVYE 542 (605)
Q Consensus 525 sHD~~~~-~~~adrviv~~ 542 (605)
||+...+ ..+.+|..+++
T Consensus 171 t~~~~~l~~~l~sR~~~~~ 189 (354)
T 1sxj_E 171 CDSMSPIIAPIKSQCLLIR 189 (354)
T ss_dssp ESCSCSSCHHHHTTSEEEE
T ss_pred eCCHHHHHHHHHhhceEEe
Confidence 9986432 23445544443
No 240
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.10 E-value=5.3e-12 Score=135.95 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhcCCcEEEEEe-cCHh
Q 040300 200 LCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS-LLRPNSYVIVVE-HDLS 277 (605)
Q Consensus 200 ~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~-l~~~g~tvivvs-Hdl~ 277 (605)
++..+++. ++++.+||+|++|++++|++|+..|.++++ |.+|+..+ ...+.+.+ +.+.+.++++|| |.-+
T Consensus 239 lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 239 LLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp EEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred hhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 44445554 567889999999999999999999999999 99998766 33444444 434476777666 4444
Q ss_pred HHHhhcC
Q 040300 278 VLDYLSD 284 (605)
Q Consensus 278 ~l~~~~D 284 (605)
-++.+.+
T Consensus 311 gi~eL~~ 317 (416)
T 1udx_A 311 GLPALKE 317 (416)
T ss_dssp THHHHHH
T ss_pred CHHHHHH
Confidence 4444433
No 241
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.09 E-value=3.1e-11 Score=124.42 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=116.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeCccccccccccchhhHHHHHhhhcCCCCCccccc
Q 040300 245 SYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRF 324 (605)
Q Consensus 245 s~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g~~~~~g~~~~~~~~r~~i~~~l~g~~~~e~~~~ 324 (605)
.-+|... +.+.++++. .++|.++|+++.+..++|++..+..+.... ...+..+.+.
T Consensus 20 ~~~~~~~---l~~~l~~l~---~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~----~~~~~~~~~~-------------- 75 (295)
T 1ls1_A 20 GRITEED---LKATLREIR---RALMDADVNLEVARDFVERVREEALGKQVL----ESLTPAEVIL-------------- 75 (295)
T ss_dssp CSCCHHH---HHHHHHHHH---HHHHHTTCCHHHHHHHHHHHHHHHHHTTTT----TCSCHHHHHH--------------
T ss_pred CCCCHHH---HHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHcccccc----ccCCcHHHHH--------------
Confidence 3466654 445555554 689999999999999999886552111000 0000000000
Q ss_pred ccccccccccCCCcchhhhhhhheeeecCCceeeeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 325 RDESLTFRVAETPQESAEEIETYARYKYPTMVKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 325 r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
....++. .+.|+... .+++|+ + |++++++|+||+||||+++.|+|.+.+..|+
T Consensus 76 ----------------~~~~~~l-~~~~~~~~---~~i~~~--~-----~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~ 128 (295)
T 1ls1_A 76 ----------------ATVYEAL-KEALGGEA---RLPVLK--D-----RNLWFLVGLQGSGKTTTAAKLALYYKGKGRR 128 (295)
T ss_dssp ----------------HHHHHHH-HHHTTSSC---CCCCCC--S-----SEEEEEECCTTTTHHHHHHHHHHHHHHTTCC
T ss_pred ----------------HHHHHHH-HHHHCCCC---ceeecC--C-----CeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 0011122 34444221 345554 3 4799999999999999999999999877665
Q ss_pred eeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHcc
Q 040300 405 DSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGK 484 (605)
Q Consensus 405 i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~ 484 (605)
+ .++..+... .....++ ..+.+..++.-+... ...+-.+.+|.+|+.+...
T Consensus 129 v----------~l~~~d~~~--~~~~~ql---------------~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~ 179 (295)
T 1ls1_A 129 P----------LLVAADTQR--PAAREQL---------------RLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLE 179 (295)
T ss_dssp E----------EEEECCSSC--HHHHHHH---------------HHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHH
T ss_pred E----------EEecCCccc--HhHHHHH---------------HHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhC
Confidence 4 233222110 0111111 012233344322100 0123345679999999889
Q ss_pred CCCEEEEecC-CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 485 PADIYLIDEP-SAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 485 ~p~lllLDEP-t~~LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
++|++|+||| +.++|.....++.++++.+ ....+++++..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~--~~~~~~lv~~~ 220 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVL--GPDEVLLVLDA 220 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHH--CCSEEEEEEEG
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhc--CCCEEEEEEeC
Confidence 9999999999 9999998888888877765 23556666654
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.08 E-value=8.4e-11 Score=123.89 Aligned_cols=111 Identities=20% Similarity=0.126 Sum_probs=68.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC-CCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK-PNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
.+|++++|+|+||+|||||+|+|+|... |..|.+...... .... -.... ..+.+|....++..
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~-g~~t-t~~~~--------------i~~v~q~~~l~dtp 276 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL-GQHT-TTAAR--------------LYHFPHGGDVIDSP 276 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------CCCE--------------EEECTTSCEEEECH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCC-Cccc-eEEEE--------------EEEECCCCEecCcc
Confidence 3799999999999999999999999999 999987521000 0000 00000 00111111001000
Q ss_pred hhchhhh----hcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHH
Q 040300 180 VQGNVGQ----VLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVA 231 (605)
Q Consensus 180 ~~~~v~~----~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL 231 (605)
.+.+ .+........+.++++.+++..+.++.+.+|| ||+||++||+++
T Consensus 277 ---gv~e~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 277 ---GVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp ---HHHTCCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred ---cHHHhhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1111 01223345567788999999999999999999 999999999864
No 243
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.07 E-value=8.4e-13 Score=128.72 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=77.3
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHH----hhhccCCCCHHH
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLH----QKIRDSYTHPQF 447 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~----~~~~~~~~~~~~ 447 (605)
.+|++++|+||||||||||+++|+|+++|+ |. .+++++++... +..+..+... ......+. ...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~---------~~g~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 87 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GL---------PAEVVPMDGFH-LDNRLLEPRGLLPRKGAPETFD-FEG 87 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TC---------CEEEEESGGGB-CCHHHHGGGTCGGGTTSGGGBC-HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CC---------ceEEEecCCCc-CCHHHHHHhcccccCCCCchhh-HHH
Confidence 356899999999999999999999999864 21 23444443211 1111111110 00011111 111
Q ss_pred HHHHHhhcC----Cc-hhhccCcCcCChhHHHHHHHH-HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 040300 448 VSDVMKPLL----IE-QLMDQEVVNLSGGELQRVALC-LCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTA 521 (605)
Q Consensus 448 ~~~~l~~l~----l~-~~~~~~~~~LSGGe~QRvaiA-~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 521 (605)
..+.+..+. +. ...++ ...+|+||+||+++| ++++.++.++++|||.. ..+.++ --.+
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~----~d~~ 151 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAI----WDVS 151 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGT----CSEE
T ss_pred HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHh----cCEE
Confidence 222333221 11 12222 345799999999998 77788888878888741 111221 2367
Q ss_pred EEEecCHHH-HHhhcCE
Q 040300 522 FVVEHDFIM-ATYLADR 537 (605)
Q Consensus 522 ivvsHD~~~-~~~~adr 537 (605)
++++++.+. +.++..|
T Consensus 152 i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 152 IRLEVPMADLEARLVQR 168 (208)
T ss_dssp EEECCCHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHH
Confidence 788888775 4555555
No 244
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.06 E-value=1.1e-12 Score=144.95 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=93.7
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--ccc-c--C-cceeEeecCcCCCCCcCcHHHH
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVE-I--P-EFNVSYKPQKISPKFQSTVRHL 433 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~-~--~-~~~i~y~~q~~~~~~~~tv~~~ 433 (605)
.++++.+..| ++++|+||||||||||+++|+|+++|++|.+. +.. . + ...+++..|........+..++
T Consensus 251 ~~l~~~v~~g-----~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 251 AYLWLAIEHK-----FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHTT-----CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHhCC-----CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 3444544444 78999999999999999999999999998764 211 1 1 1124444432111111233333
Q ss_pred HHhhhcc--------CCCCH---------------------HHHHHHHhhc-----CCch----hhc---cCcCcCChhH
Q 040300 434 LHQKIRD--------SYTHP---------------------QFVSDVMKPL-----LIEQ----LMD---QEVVNLSGGE 472 (605)
Q Consensus 434 ~~~~~~~--------~~~~~---------------------~~~~~~l~~l-----~l~~----~~~---~~~~~LSGGe 472 (605)
+....+. ..... ..+.++++++ ++.. .++ .....+||||
T Consensus 326 l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~ 405 (511)
T 2oap_1 326 LRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNT 405 (511)
T ss_dssp HHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSC
T ss_pred HHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCC
Confidence 2211110 00000 0122233332 2221 112 3345689999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EecCHHHHHhhcC
Q 040300 473 LQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFV--VEHDFIMATYLAD 536 (605)
Q Consensus 473 ~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiiv--vsHD~~~~~~~ad 536 (605)
+||+++|. + | |+|||+..+..+++.|.++. ..+.|+++ +||+++++...|+
T Consensus 406 ~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 406 RLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHHHHHHHHHT
T ss_pred ceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHHHHHHHHcC
Confidence 99987651 1 7 99999988877777777763 34788875 8999999988774
No 245
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.06 E-value=7.8e-10 Score=109.31 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=46.7
Q ss_pred cCCCEEEEecCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH--------HHhhcCEEEEEeC
Q 040300 484 KPADIYLIDEPSAYL--DSEQRIVAAKVIKRFILHAKKTAFVVEHDFIM--------ATYLADRVIVYEG 543 (605)
Q Consensus 484 ~~p~lllLDEPt~~L--D~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~--------~~~~adrviv~~g 543 (605)
.+|+++++|+|++.+ |+..+..++..|.+++++.|.|||+++|.... +.++||.|+.++.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 66555566666666666779999999998665 4678999999863
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.05 E-value=2.4e-12 Score=125.53 Aligned_cols=144 Identities=21% Similarity=0.218 Sum_probs=77.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCC---CceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPN---LGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHI 176 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~ 176 (605)
..+|+++||+|+||||||||+++|+|+++|+ .|.+.. .|..+.. ....++.. + + . ...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~-----------d~~~~~~----~~~~~~~~-~-~-~-~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM-----------DGFHLDN----RLLEPRGL-L-P-R-KGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES-----------GGGBCCH----HHHGGGTC-G-G-G-TTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec-----------CCCcCCH----HHHHHhcc-c-c-c-CCC
Confidence 3689999999999999999999999999864 455531 1111100 00000000 0 0 0 001
Q ss_pred hhhhhchhhhhcCchHHHHHHHHHHhhcCCc-hhhcccCCCCChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHH
Q 040300 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLN-QVIDRNVGDLSGGELQRFAIA-VVAVQNAEIYMFDEPSSYLDVKQRLK 254 (605)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~-~~~dr~v~~LSGGe~QRvaIA-~aL~~~p~vlllDEPts~LD~~~r~~ 254 (605)
+.. +........+..+...-++. ...++. ..+|+||+||+++| ++++.++.++++|||.-
T Consensus 80 ~~~--------~~~~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------- 141 (208)
T 3c8u_A 80 PET--------FDFEGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------- 141 (208)
T ss_dssp GGG--------BCHHHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG---------
T ss_pred Cch--------hhHHHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh---------
Confidence 110 11000111111111110121 123333 34799999999998 88888888888888731
Q ss_pred HHHHHHHhhcCCcEEEEEecCHhH-HHhhcCE
Q 040300 255 AAQVVRSLLRPNSYVIVVEHDLSV-LDYLSDF 285 (605)
Q Consensus 255 ~~~~i~~l~~~g~tvivvsHdl~~-l~~~~D~ 285 (605)
..+..+ --.+++++++.+. +..+..|
T Consensus 142 --~~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 --RDLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp --GGGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred --HHHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 112222 2468899999887 4445444
No 247
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=7.7e-11 Score=126.72 Aligned_cols=57 Identities=11% Similarity=0.030 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhcCCcEEEEEecC
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS-LLRPNSYVIVVEHD 275 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~-l~~~g~tvivvsHd 275 (605)
.|+-.+ +.|+++|..++.|+++|||+..|.+.....+.+.|++ |...|..|+.++.|
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 466555 7999999999999999999999999999999999986 77789999999975
No 248
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.04 E-value=1e-12 Score=124.69 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=75.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCC---eeeee--ccc---cC-----c---ceeE----eecCcCCCCCcCcHHHHH
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPD---SVEDS--DVE---IP-----E---FNVS----YKPQKISPKFQSTVRHLL 434 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~---~G~i~--~~~---~~-----~---~~i~----y~~q~~~~~~~~tv~~~~ 434 (605)
++++|+|+||||||||+++|+|+++|+ .|.+. +.. .. . ..++ +++|+.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--------
Confidence 579999999999999999999999998 78764 111 10 0 1244 4555432110
Q ss_pred HhhhccCCCCHH---HHHHHHhh-c-CCchhhccCcCcCChhHHHHHHHHHHHccCCCEE-------EEecCCC---CCC
Q 040300 435 HQKIRDSYTHPQ---FVSDVMKP-L-LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIY-------LIDEPSA---YLD 499 (605)
Q Consensus 435 ~~~~~~~~~~~~---~~~~~l~~-l-~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~ll-------lLDEPt~---~LD 499 (605)
.. .... ...++++. + +++... ...|||||+||++||||+..+|+++ +=|.|.. -+|
T Consensus 75 ----~~--~~~~~~a~l~~~i~~~l~g~dt~i---~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 75 ----RR--VSEEEGNDLDWIYERYLSDYDLVI---TEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp ----EE--CCHHHHTCHHHHHHHHTTTCSEEE---EESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred ----ec--CChhhhhCHHHHHHhhCCCCCEEE---ECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 00 0011 12333333 3 333222 2249999999999999999998874 2345432 234
Q ss_pred HHHHHHHHHHHHHHHhc
Q 040300 500 SEQRIVAAKVIKRFILH 516 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~~~ 516 (605)
......+.+.|.+...+
T Consensus 146 ~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 146 RDEVERIAEFILSLLRE 162 (171)
T ss_dssp TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHhc
Confidence 44556777787666554
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.03 E-value=1e-11 Score=133.86 Aligned_cols=114 Identities=18% Similarity=0.078 Sum_probs=75.9
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--ccc----C-------cceeEe---------ecCcCCCC--C--
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEI----P-------EFNVSY---------KPQKISPK--F-- 426 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~----~-------~~~i~y---------~~q~~~~~--~-- 426 (605)
+|++++|+||||||||||+++|+|++.|++|.+.. ..+ + ...+++ ++|++... .
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 45799999999999999999999999999887641 111 1 012333 33654321 1
Q ss_pred --cCcHHHHHHhhhcc-------CCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEE
Q 040300 427 --QSTVRHLLHQKIRD-------SYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYL 490 (605)
Q Consensus 427 --~~tv~~~~~~~~~~-------~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll 490 (605)
..|+.+++...... ...+...+.+.+..+++.... .+.+|||||+|| ||++|+.+|++..
T Consensus 246 Rd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 246 RDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred CCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 13666655321110 111222333467788888654 678999999999 9999999999865
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.03 E-value=4.6e-11 Score=123.47 Aligned_cols=105 Identities=14% Similarity=0.043 Sum_probs=74.8
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-----cccC------c-ceeEeecCcCCCC-----CcCcHHHHHH-
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-----VEIP------E-FNVSYKPQKISPK-----FQSTVRHLLH- 435 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-----~~~~------~-~~i~y~~q~~~~~-----~~~tv~~~~~- 435 (605)
|++++|+||||+|||||+++|+ +.+|++|++.. .... . ..++|++|.+... ...|+ +++.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~ 242 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRN 242 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHH
Confidence 3689999999999999999999 99999998752 1111 1 1479999986432 34567 4331
Q ss_pred -hh--------hcc--CC-CCHHHHHHHHhhcCCch-hhccCcCcCChhHHHHHHHHH
Q 040300 436 -QK--------IRD--SY-THPQFVSDVMKPLLIEQ-LMDQEVVNLSGGELQRVALCL 480 (605)
Q Consensus 436 -~~--------~~~--~~-~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGe~QRvaiA~ 480 (605)
.. ... .. .....+.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 243 ~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 243 YFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 111 11 11245788999999986 889999999999899999986
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.01 E-value=1.4e-12 Score=126.34 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=41.3
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHHHhhcCEEEEEeC
Q 040300 227 IAV-VAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYG 291 (605)
Q Consensus 227 IA~-aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~g 291 (605)
+|+ +++.+|.+++|||+|+++|..+...+.+.|..+.+. +.+.|. . ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c--CCceEEEECCC
Confidence 455 678888899999999999987777777777766542 234561 1 56899988853
No 252
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.00 E-value=7.8e-10 Score=113.88 Aligned_cols=122 Identities=18% Similarity=0.136 Sum_probs=78.6
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhhh
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQ 181 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 181 (605)
+|++++++|+||+||||++..|+|.+.+..|++. +.+.+.+.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~-----------l~~~d~~~~~~~----------------------- 142 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL-----------LVAADTQRPAAR----------------------- 142 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE-----------EEECCSSCHHHH-----------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE-----------EecCCcccHhHH-----------------------
Confidence 7999999999999999999999999988777653 112221110000
Q ss_pred chhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHH
Q 040300 182 GNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEP-SSYLDVKQRLKAAQVVR 260 (605)
Q Consensus 182 ~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEP-ts~LD~~~r~~~~~~i~ 260 (605)
.....+.+..++..+... ...+..+.+|.+|+.+...++|++|+||| ++++|......+.++.+
T Consensus 143 -------------~ql~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 143 -------------EQLRLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp -------------HHHHHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred -------------HHHHHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 000011222344322100 01234566899999998899999999999 99999887777777666
Q ss_pred HhhcCCcEEEEEe
Q 040300 261 SLLRPNSYVIVVE 273 (605)
Q Consensus 261 ~l~~~g~tvivvs 273 (605)
.+. ...+++++.
T Consensus 208 ~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 208 VLG-PDEVLLVLD 219 (295)
T ss_dssp HHC-CSEEEEEEE
T ss_pred hcC-CCEEEEEEe
Confidence 553 234444444
No 253
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.00 E-value=7.4e-10 Score=120.82 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=103.0
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHh-----------h
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQ-----------K 437 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~-----------~ 437 (605)
|-+.+|+++.|.|++|+|||||+..+++...+..| ..+.|+.-+. +..++... .
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---------~~Vl~~s~E~------s~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN---------ENVAIFSLEM------SAQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS---------CCEEEEESSS------CHHHHHHHHHHHHHTCCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC---------CcEEEEECCC------CHHHHHHHHHHHHcCCCHHH
Confidence 45788899999999999999999999986654323 1345554332 22221110 0
Q ss_pred hcc-CCCCH--HHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCC--------HHHHH
Q 040300 438 IRD-SYTHP--QFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLD--------SEQRI 504 (605)
Q Consensus 438 ~~~-~~~~~--~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD--------~~~~~ 504 (605)
+.. ..... ..+.+.++.++..++.-.....+|.+|.+ +.++.+. .+|+++++|+++...+ .....
T Consensus 263 l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~ 340 (454)
T 2r6a_A 263 LRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVS 340 (454)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHH
Confidence 011 11111 12233444443333333345689999987 4555554 6899999999999884 33446
Q ss_pred HHHHHHHHHHhcCCcEEEEEec---------C--HH--------HHHhhcCEEEEEeCC
Q 040300 505 VAAKVIKRFILHAKKTAFVVEH---------D--FI--------MATYLADRVIVYEGQ 544 (605)
Q Consensus 505 ~l~~~l~~l~~~~g~tiivvsH---------D--~~--------~~~~~adrviv~~g~ 544 (605)
.+.+.|+.++++.+.+||+++| | .. .+.+.||.|+++...
T Consensus 341 ~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 341 EISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred HHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 7788888888778999999999 3 22 567889999999743
No 254
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.99 E-value=8.9e-13 Score=140.77 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=95.6
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHc------------CCCCCeeeeecc--cc--------Cccee---EeecCcCC
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAG------------LLKPDSVEDSDV--EI--------PEFNV---SYKPQKIS 423 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~G------------l~~p~~G~i~~~--~~--------~~~~i---~y~~q~~~ 423 (605)
|.+..|++++|+|+||+|||||+++|+| .+.|+.|.+... .. +...+ .++.+.+.
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 4556678999999999999999999999 556777765310 00 01111 13333322
Q ss_pred CCCcCcHHH----HHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCC--CEEEEecCCCC
Q 040300 424 PKFQSTVRH----LLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPA--DIYLIDEPSAY 497 (605)
Q Consensus 424 ~~~~~tv~~----~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p--~lllLDEPt~~ 497 (605)
.....+..+ .+...++. ++.++..++. .-+..+..+||+. +| +++++|||+++
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~-------~d~il~Vvd~--~~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRA-------VDAIYQVVRA--FDDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTT-------CSEEEEEEEC--CCTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHH-------HHHHHHHHhc--cccceeeeecccc------------CcchhhhhchhhhHH
Confidence 211111111 00000000 0001111111 1245566677763 89 99999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEE-EEeCC
Q 040300 498 LDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVI-VYEGQ 544 (605)
Q Consensus 498 LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrvi-v~~g~ 544 (605)
+|+..+...+..++++....|.|++ +|++..+..+||++. +++.+
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccC
Confidence 9999999999999887233467753 999999999999998 77644
No 255
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.97 E-value=3.1e-11 Score=126.37 Aligned_cols=139 Identities=21% Similarity=0.160 Sum_probs=92.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC----CCCeeeeec--cc-------cCcceeEeecCcCCCCCcCcHHHHHHhhhccC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL----KPDSVEDSD--VE-------IPEFNVSYKPQKISPKFQSTVRHLLHQKIRDS 441 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~----~p~~G~i~~--~~-------~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~ 441 (605)
+.++|+||||+|||||+++|+|.+ .+++|.+.. .. .....|.+++|.... ..++.+.+.......
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l--~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRL--NKAVEELLYSAIEDF 129 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGC--CHHHHHHHHHHHHTS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhc--CHHHHHHHHHHHHhc
Confidence 568999999999999999999998 666665431 11 123458888875432 226666654322111
Q ss_pred C--------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q 040300 442 Y--------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513 (605)
Q Consensus 442 ~--------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 513 (605)
. .....+...+..+++.. ..+.+..||+|++||+.++ .+||+.+..++.++|++.
T Consensus 130 ~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 130 QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp CCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred ccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 0 11122344556666655 6788899999999998655 788888888999999987
Q ss_pred HhcCCcEEEEEecCHHHHHhhcCE
Q 040300 514 ILHAKKTAFVVEHDFIMATYLADR 537 (605)
Q Consensus 514 ~~~~g~tiivvsHD~~~~~~~adr 537 (605)
....+ ++||.+.+..+|++
T Consensus 193 ~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 193 ASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp HHHTT-----CCBCHHHHHHHHHT
T ss_pred HHHcC-----CCcCHHHHHHHHHh
Confidence 65444 47888888887764
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.97 E-value=6.8e-10 Score=114.84 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=65.6
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHH
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVM 452 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 452 (605)
+|++++|+|+||+||||+++.|++.++++.|++ .++..+. +.....+ ....++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV----------~lv~~D~---~r~~a~e--------------qL~~~~ 155 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV----------VLAAADT---FRAAAIE--------------QLKIWG 155 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE----------EEEEECT---TCHHHHH--------------HHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE----------EEEcccc---ccHHHHH--------------HHHHHH
Confidence 347899999999999999999999998776554 2332221 1101111 122344
Q ss_pred hhcCCchhhccCcCcCChhHHHHH---HHHHHHccCCCEEEEecCCC
Q 040300 453 KPLLIEQLMDQEVVNLSGGELQRV---ALCLCLGKPADIYLIDEPSA 496 (605)
Q Consensus 453 ~~l~l~~~~~~~~~~LSGGe~QRv---aiA~aL~~~p~lllLDEPt~ 496 (605)
+.+++.. +..+|||+.|++ +|++++..+|+++|+|||..
T Consensus 156 ~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 156 ERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 4556543 346799999999 99999999999999999985
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.97 E-value=4.6e-10 Score=115.66 Aligned_cols=130 Identities=17% Similarity=0.154 Sum_probs=81.7
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHH
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVM 452 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 452 (605)
+|++++|+|+||+||||++..|++.+.+++|. ++.++.++.. ..+..+.+.. +.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~---------~V~lv~~D~~---r~~a~eqL~~--------------~~ 157 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK---------KIAFITTDTY---RIAAVEQLKT--------------YA 157 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC---------CEEEEECCCS---STTHHHHHHH--------------HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC---------EEEEEecCcc---cchHHHHHHH--------------HH
Confidence 35799999999999999999999999876662 4666766542 2233332211 11
Q ss_pred hhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEE--ecCH
Q 040300 453 KPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL--HAKKTAFVV--EHDF 528 (605)
Q Consensus 453 ~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tiivv--sHD~ 528 (605)
+.+++.... ..+. ...+.+|++ +.+++++|+| |+|+|...+..+..+.+ +.. ....+++++ +|+.
T Consensus 158 ~~~gl~~~~-----~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~ 226 (296)
T 2px0_A 158 ELLQAPLEV-----CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKY 226 (296)
T ss_dssp TTTTCCCCB-----CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCH
T ss_pred HhcCCCeEe-----cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCH
Confidence 222332111 1122 334566664 4899999999 99999876654444433 322 122345555 9999
Q ss_pred HHHHhhcCEEE
Q 040300 529 IMATYLADRVI 539 (605)
Q Consensus 529 ~~~~~~adrvi 539 (605)
..+..+++++.
T Consensus 227 ~~~~~~~~~~~ 237 (296)
T 2px0_A 227 EDMKHIVKRFS 237 (296)
T ss_dssp HHHHHHTTTTS
T ss_pred HHHHHHHHHHh
Confidence 88888888754
No 258
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.96 E-value=9.9e-10 Score=119.82 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=101.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCc-eeeCCCChhhhhhhhccchhh--hhHHHHHHHHHHHhhcccccccc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-RFNNPPDWQEILTYFRGSELQ--NYFTRILEDNLKAIIKPQYVDHI 176 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G-~i~~~~~~~~~~~~~~g~~l~--~~~~~~~~~~~~~~~~~q~~~~~ 176 (605)
+.+|+++.|.|++|+|||||+..+++...+..| .+. ++ +.+.. ....++.... ..+..+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl----------~~-s~E~s~~~l~~r~~~~~--~~~~~~----- 261 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVA----------IF-SLEMSAQQLVMRMLCAE--GNINAQ----- 261 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEE----------EE-ESSSCHHHHHHHHHHHH--HTCCHH-----
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEE----------EE-ECCCCHHHHHHHHHHHH--cCCCHH-----
Confidence 469999999999999999999999987765444 221 11 11110 0111110000 000000
Q ss_pred hhhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCC------
Q 040300 177 PKAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV--QNAEIYMFDEPSSYLD------ 248 (605)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~--~~p~vlllDEPts~LD------ 248 (605)
....+ .+. ..+..++.+.++.++...+.-.....+|.+|.+ +.++.++ .+|+++++|+++...+
T Consensus 262 -~l~~g----~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~ 333 (454)
T 2r6a_A 262 -NLRTG----KLT-PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKE 333 (454)
T ss_dssp -HHHTS----CCC-HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC---
T ss_pred -HHhcC----CCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCC
Confidence 00001 011 122344555566555544444456789999987 4555555 7899999999999884
Q ss_pred --HHHHHHHHHHHHHhhcC-CcEEEEEec---------C--Hh--------HHHhhcCEEEEEeC
Q 040300 249 --VKQRLKAAQVVRSLLRP-NSYVIVVEH---------D--LS--------VLDYLSDFICCLYG 291 (605)
Q Consensus 249 --~~~r~~~~~~i~~l~~~-g~tvivvsH---------d--l~--------~l~~~~D~i~vl~g 291 (605)
......+.+.|+.++++ +.+||+++| | +. .+.+.||.|+.|+.
T Consensus 334 ~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 334 NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 23445677777877754 899999999 3 22 56778999999974
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.95 E-value=1.9e-09 Score=111.42 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAV 180 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 180 (605)
.+|++++|+|+||+||||+++.|++.+.+..|++. +.+.+.+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~-----------lv~~D~~r~------------------------- 145 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV-----------LAAADTFRA------------------------- 145 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-----------EEEECTTCH-------------------------
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE-----------EEccccccH-------------------------
Confidence 57999999999999999999999999988766652 111111100
Q ss_pred hchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHH---HHHHHHccCCCEEEEeCCCC
Q 040300 181 QGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRF---AIAVVAVQNAEIYMFDEPSS 245 (605)
Q Consensus 181 ~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRv---aIA~aL~~~p~vlllDEPts 245 (605)
...+.+..+++.+++.. +..+|||+.|++ +|++++..+||++|+|||..
T Consensus 146 -----------~a~eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 146 -----------AAIEQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----------HHHHHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----------HHHHHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 00011233445556653 346789999999 99999999999999999985
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.94 E-value=2.9e-12 Score=124.20 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHH-HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcCEEEEEeC
Q 040300 478 LCL-CLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEG 543 (605)
Q Consensus 478 iA~-aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~~~~adrviv~~g 543 (605)
.|+ +++.+|.+++|||||+++|.++...+.+.|.++..+ +.+.|. . ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECCC
Confidence 455 678888999999999999999888888888876443 234561 1 46899888763
No 261
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.93 E-value=3.4e-11 Score=123.79 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=69.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCC-----Ccee-eCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccc--
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPN-----LGRF-NNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQY-- 172 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~-----~G~i-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~-- 172 (605)
.++.++||+|++|||||||++.|++.+.+. .+.+ .. + .+ |+......++.... +..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~----D---~f--------~~~~~~~~~l~~~~-~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASI----D---DF--------YLTHEDQLKLNEQF-KNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEG----G---GG--------BCCHHHHHHHHHHT-TTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecc----c---cc--------cCChHHHHHHhccc-cccch
Confidence 578999999999999999999999998653 1111 10 0 00 11111111111100 000
Q ss_pred cc--cchhhhhchhhhhcCchHHHHHHHHHHhhcCCc--------hhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 040300 173 VD--HIPKAVQGNVGQVLDQKDERDMKADLCTDLDLN--------QVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDE 242 (605)
Q Consensus 173 ~~--~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~--------~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDE 242 (605)
.. ..|.. .+...+.+.++.+.-. ......-..+||||.||+++|++.+.+|+|+||||
T Consensus 93 ~~~~g~p~a------------~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG 160 (290)
T 1odf_A 93 LQGRGLPGT------------HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 160 (290)
T ss_dssp GSSSCSTTS------------BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEE
T ss_pred hhhccCcch------------hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeC
Confidence 00 01111 1122334455554322 11334457899999999999833333999999999
Q ss_pred CCCCCCHH
Q 040300 243 PSSYLDVK 250 (605)
Q Consensus 243 Pts~LD~~ 250 (605)
|+++||+.
T Consensus 161 ~~~~ld~~ 168 (290)
T 1odf_A 161 WFLGFNPI 168 (290)
T ss_dssp SSTTCCCC
T ss_pred ccccCCcc
Confidence 99999975
No 262
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.91 E-value=1.6e-10 Score=121.19 Aligned_cols=148 Identities=11% Similarity=0.023 Sum_probs=93.1
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc-----------CcceeEeecCcCCC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI-----------PEFNVSYKPQKISP 424 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~-----------~~~~i~y~~q~~~~ 424 (605)
.+++++|++.+| ++++|+||||||||||+++|+|++.|++|++. +... ...+++|++|+...
T Consensus 44 ~l~~i~~~~~~g-----~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 44 LIDAVLPQTGRA-----IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHGGGCCCS-----EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHhCCcccCCC-----eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 356666666665 78999999999999999999999999988764 1111 12347888887543
Q ss_pred CCc---------Cc---HHHHHH-h--------------------hh----------ccC-CCCH-H----HHHHHHhhc
Q 040300 425 KFQ---------ST---VRHLLH-Q--------------------KI----------RDS-YTHP-Q----FVSDVMKPL 455 (605)
Q Consensus 425 ~~~---------~t---v~~~~~-~--------------------~~----------~~~-~~~~-~----~~~~~l~~l 455 (605)
... .+ +.+.+. . .+ ... ..+. + ...++...+
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 211 11 111110 0 00 000 0000 0 001111122
Q ss_pred CCchhhcc-CcCcCChhHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 040300 456 LIEQLMDQ-EVVNLSGGELQRVALCLCLGK------PADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 456 ~l~~~~~~-~~~~LSGGe~QRvaiA~aL~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 515 (605)
.+ +..|. ....+|+|++|++..|++++. .|++++ ||++|......+++.|.++..
T Consensus 199 vl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 22 23342 346789999999999999987 688876 999999999999999998754
No 263
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.88 E-value=5.9e-10 Score=118.03 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccc-hhhhhHHHHHHHHHHHhhcccccccchh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGS-ELQNYFTRILEDNLKAIIKPQYVDHIPK 178 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~~~~~~q~~~~~~~ 178 (605)
+++|++++|+|+||||||||+++|+|+++|+.|.+... |. ++.. +.....+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie-----------~~~e~~~---------------~~~~~~v-- 223 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE-----------DVPELFL---------------PDHPNHV-- 223 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE-----------SSSCCCC---------------TTCSSEE--
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC-----------CccccCc---------------cccCCEE--
Confidence 47999999999999999999999999999999987521 10 0000 0000000
Q ss_pred hhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 040300 179 AVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQV 258 (605)
Q Consensus 179 ~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~ 258 (605)
. ++...+ ....++++..++.+|+.++..+|+.+++|||.. .++.++
T Consensus 224 ------~-~v~~q~--------------------~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~ 269 (361)
T 2gza_A 224 ------H-LFYPSE--------------------AKEEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDF 269 (361)
T ss_dssp ------E-EECC------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHH
T ss_pred ------E-EeecCc--------------------cccccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHH
Confidence 0 000000 000124555789999999999999999999986 235667
Q ss_pred HHHhhcCCcEEEEEecCHhHHHhhcCEEEEEe
Q 040300 259 VRSLLRPNSYVIVVEHDLSVLDYLSDFICCLY 290 (605)
Q Consensus 259 i~~l~~~g~tvivvsHdl~~l~~~~D~i~vl~ 290 (605)
|+.+.....|++.+.|+.+ ....+||+..+.
T Consensus 270 l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~ 300 (361)
T 2gza_A 270 INVAASGHGGSITSCHAGS-CELTFERLALMV 300 (361)
T ss_dssp HHHHHTTCCSCEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEECCCC-HHHHHHHHHHHH
Confidence 7777553457889999966 666789988775
No 264
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.88 E-value=1.9e-12 Score=143.15 Aligned_cols=60 Identities=12% Similarity=-0.058 Sum_probs=46.8
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEE--EecCHhHHHhhcC
Q 040300 213 NVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIV--VEHDLSVLDYLSD 284 (605)
Q Consensus 213 ~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tviv--vsHdl~~l~~~~D 284 (605)
....+||||+||.++|. + | |++||+..+..+++.|.++...+.|+++ +||+++++...|+
T Consensus 397 ~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 397 QTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 44568999999987751 1 7 9999998776666677777666889885 8999999988774
No 265
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.87 E-value=4e-09 Score=104.19 Aligned_cols=59 Identities=15% Similarity=0.003 Sum_probs=43.3
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHhh-cCCcEEEEEecCHhH--------HHhhcCEEEEEeC
Q 040300 233 QNAEIYMFDEPSSYL--DVKQRLKAAQVVRSLL-RPNSYVIVVEHDLSV--------LDYLSDFICCLYG 291 (605)
Q Consensus 233 ~~p~vlllDEPts~L--D~~~r~~~~~~i~~l~-~~g~tvivvsHdl~~--------l~~~~D~i~vl~g 291 (605)
.+|+++++|+|++.+ |+..+...+..+.+++ +.|.+||+++|.... +...+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6544444444454444 568999999998775 5677899999963
No 266
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=4.2e-11 Score=127.82 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=57.0
Q ss_pred cccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHh-hcCCcEEEEEecCHhHHHhhcCEEE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNA--EIYMFDEPSSYLDVKQRLKAAQVVRSL-LRPNSYVIVVEHDLSVLDYLSDFIC 287 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p--~vlllDEPts~LD~~~r~~~~~~i~~l-~~~g~tvivvsHdl~~l~~~~D~i~ 287 (605)
++.+..+||+. +| +++++|||++.+|+..+...+..++.+ .+.|.||+ +|++..+..+||++.
T Consensus 128 d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 128 DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVY 193 (392)
T ss_dssp TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHH
T ss_pred cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHH
Confidence 45666677763 99 999999999999999999999999998 66677764 999999999999998
Q ss_pred -EEeCc
Q 040300 288 -CLYGK 292 (605)
Q Consensus 288 -vl~g~ 292 (605)
+|..+
T Consensus 194 ~~L~~G 199 (392)
T 1ni3_A 194 QYLTET 199 (392)
T ss_dssp HHHHTT
T ss_pred HHhccC
Confidence 67543
No 267
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.86 E-value=5.9e-10 Score=104.23 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=49.2
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec--cccCc-ce-eEeecCcCCCCCcCcHHHH
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD--VEIPE-FN-VSYKPQKISPKFQSTVRHL 433 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~--~~~~~-~~-i~y~~q~~~~~~~~tv~~~ 433 (605)
.+++++|++.+| |+++|+||||||||||+|+|+|++ |++|++.. ..+.. .. ..|++|+.... ..|+.++
T Consensus 22 ~l~~vsl~i~~G-----e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 22 AEILLKLHTEKA-----IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHCCSSC-----EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTH
T ss_pred HHhccccccCCC-----CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-cCCcHHH
Confidence 456777777777 789999999999999999999999 99998751 11110 00 12677775443 5666554
Q ss_pred H
Q 040300 434 L 434 (605)
Q Consensus 434 ~ 434 (605)
+
T Consensus 95 l 95 (158)
T 1htw_A 95 L 95 (158)
T ss_dssp H
T ss_pred H
Confidence 4
No 268
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.86 E-value=1.6e-10 Score=125.84 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
+.+|++++|+|+||||||||+++|+|+++|+.|++.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 468999999999999999999999999999999874
No 269
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.85 E-value=3.2e-09 Score=109.37 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=77.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCc-eeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG-RFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G-~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
.+|++++|+|+||+||||+++.|++.+.++.| ++. +.+.+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~-----------lv~~D~~r~------------------------ 147 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA-----------FITTDTYRI------------------------ 147 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE-----------EEECCCSST------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE-----------EEecCcccc------------------------
Confidence 57999999999999999999999999988777 331 111110000
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
...+....+.+.+|+.... ..+. ...+.+|++ +.+||++|+| |+++|+..+..+.++.
T Consensus 148 ------------~a~eqL~~~~~~~gl~~~~-----~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~ 205 (296)
T 2px0_A 148 ------------AAVEQLKTYAELLQAPLEV-----CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELK 205 (296)
T ss_dssp ------------THHHHHHHHHTTTTCCCCB-----CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHH
T ss_pred ------------hHHHHHHHHHHhcCCCeEe-----cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHH
Confidence 0000111122223332111 1122 334566664 4999999999 9999987655444443
Q ss_pred HHhhc--CCcEEEEE--ecCHhHHHhhcCEEE
Q 040300 260 RSLLR--PNSYVIVV--EHDLSVLDYLSDFIC 287 (605)
Q Consensus 260 ~~l~~--~g~tvivv--sHdl~~l~~~~D~i~ 287 (605)
+-+.. ...+++++ +|+...+..+++++.
T Consensus 206 ~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 206 ETIPFESSIQSFLVLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS
T ss_pred HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh
Confidence 33321 22334444 899988888877653
No 270
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.82 E-value=5.4e-12 Score=128.68 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=78.6
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCc-------ceeEeecCcCC-CCCcCc
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPE-------FNVSYKPQKIS-PKFQST 429 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~-------~~i~y~~q~~~-~~~~~t 429 (605)
.+.++++.+..| ++|+||||+|||||+++|+|...+..-.+.+..+.. ..+++++|... .....+
T Consensus 35 ~l~~~~l~~~~G-------vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 35 QFKALGLVTPAG-------VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHTTCCCCSE-------EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHcCCCCCCe-------EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 356666777666 899999999999999999999877322221111100 12333333210 000011
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC------------C
Q 040300 430 VRHLLHQKIRDSYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA------------Y 497 (605)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~------------~ 497 (605)
+.+.+... ..... ..+ .-......++.+.+|||||+||+.|++|+..+|++| |||+. .
T Consensus 108 ~~Deid~~----~~~r~-~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~ 177 (274)
T 2x8a_A 108 FFDEVDAL----CPRRS-DRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGL 177 (274)
T ss_dssp EEETCTTT----CC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCS
T ss_pred eeehhhhh----hcccC-CCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCC
Confidence 11111000 00000 000 001234566778899999999999999999999975 99964 3
Q ss_pred CCHHHHHHHHHHH
Q 040300 498 LDSEQRIVAAKVI 510 (605)
Q Consensus 498 LD~~~~~~l~~~l 510 (605)
.|...|..+++.+
T Consensus 178 P~~~~r~~il~~~ 190 (274)
T 2x8a_A 178 PPPADRLAILKTI 190 (274)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4777777766554
No 271
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.82 E-value=5.3e-11 Score=121.30 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=41.6
Q ss_pred chhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC------------CCCCHHHHHHHHHHH
Q 040300 207 NQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPS------------SYLDVKQRLKAAQVV 259 (605)
Q Consensus 207 ~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPt------------s~LD~~~r~~~~~~i 259 (605)
....++.+.+|||||+||+.|++|+..+|++| |||+ ...|..+|..+++.+
T Consensus 128 ~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 128 VRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 45667788899999999999999999999975 9986 345788887776654
No 272
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.81 E-value=9.4e-11 Score=126.31 Aligned_cols=129 Identities=21% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee---CCCChh--hhhhhhccchhhhhHHHHHHHHHHHhhccccccc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN---NPPDWQ--EILTYFRGSELQNYFTRILEDNLKAIIKPQYVDH 175 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~---~~~~~~--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~ 175 (605)
.+|++++|+||||||||||+++|+|.++|+.|+|. .+.... .+...-........|... ++.+ ..|..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~----lr~~-Lrq~pd~ 239 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARG----LRAI-LRQDPDV 239 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHH----HHHH-GGGCCSE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHH----HHHH-hccCCCe
Confidence 68999999999999999999999999999999864 111110 000000000111111111 1111 1121111
Q ss_pred c--h-----hhhhchhhhh---------cCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEE
Q 040300 176 I--P-----KAVQGNVGQV---------LDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYM 239 (605)
Q Consensus 176 ~--~-----~~~~~~v~~~---------l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll 239 (605)
+ . ..+...+... +...+.. .+.+.+..+++.... .+.+|||||+|| ||++|+.+|++..
T Consensus 240 i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~-~~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 240 VMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV-GAVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred EEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH-HHHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 1 0 0010001000 1111112 233356778887653 678999999999 9999999999876
No 273
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.79 E-value=9.7e-09 Score=108.15 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=82.2
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.||||+|||||+..++.......+ .+.|+.-+... . ....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~----------~vlyi~~E~~~--~----~~~a------------- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG----------IAAFIDAEHAL--D----PEYA------------- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC----------CEEEEESSCCC--C----HHHH-------------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC----------eEEEEECCCCc--C----HHHH-------------
Confidence 56888899999999999999998888765432222 34555543211 1 0111
Q ss_pred HHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHcc--CCCEEEEecCCCCC----------CH---HHHHHHHHHHH
Q 040300 449 SDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLGK--PADIYLIDEPSAYL----------DS---EQRIVAAKVIK 511 (605)
Q Consensus 449 ~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~~--~p~lllLDEPt~~L----------D~---~~~~~l~~~l~ 511 (605)
+.+++. .+.-. ...+. .|-+.++++++. +|+++++|||++.+ |+ .+.+.+.+.++
T Consensus 107 ----~~lG~~~~~l~i~--~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 107 ----KKLGVDTDSLLVS--QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp ----HHTTCCGGGCEEE--CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred ----HHcCCCHHHeEEe--cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 111111 11100 11232 234567777765 49999999999998 33 22234455555
Q ss_pred HH---HhcCCcEEEEEecCHH----------------HHHhhcCEEEEEe
Q 040300 512 RF---ILHAKKTAFVVEHDFI----------------MATYLADRVIVYE 542 (605)
Q Consensus 512 ~l---~~~~g~tiivvsHD~~----------------~~~~~adrviv~~ 542 (605)
++ +++.+.|||+++|-.. .+..+||.++.+.
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lr 228 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVR 228 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEE
Confidence 54 3566999999999543 2567899888775
No 274
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.75 E-value=6e-10 Score=122.47 Aligned_cols=166 Identities=15% Similarity=0.063 Sum_probs=97.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhc--CCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccc---ccc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAG--KLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQY---VDH 175 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G--~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~---~~~ 175 (605)
..+.+++|.|++||||||+++.|.. +..++-|++..- +--+.+.+++.|.. .|.. +-.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~------liDpK~~el~~~~~-----------lPhl~~~Vvt 227 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFI------MIDPKMLELSVYEG-----------IPHLLTEVVT 227 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEE------EECCSSSGGGGGTT-----------CTTBSSSCBC
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEE------EECCchhhhhhhcc-----------CCcccceeec
Confidence 4689999999999999999999875 334443443200 00011222322210 0110 000
Q ss_pred chhhhhchhhhhcC--chHHHHHHHHHHhhcCCchhhcc---cCCCCChHHHHHH----------HHHHHHccCCC-EEE
Q 040300 176 IPKAVQGNVGQVLD--QKDERDMKADLCTDLDLNQVIDR---NVGDLSGGELQRF----------AIAVVAVQNAE-IYM 239 (605)
Q Consensus 176 ~~~~~~~~v~~~l~--~~~~~~~~~~~l~~l~L~~~~dr---~v~~LSGGe~QRv----------aIA~aL~~~p~-vll 239 (605)
.+.. ....+. ...+++| .+++..+|+.++.+. ....+|+||+|+. ++|+++...|. +++
T Consensus 228 d~~~----a~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 228 DMKD----AANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp SHHH----HHHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred CHHH----HHHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 0100 011111 1123334 367888888765432 2346899988752 35667788898 899
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhh---c-CCcEEEEEecCHh-------HHHhhcCEEEEE
Q 040300 240 FDEPSSYLDVKQRLKAAQVVRSLL---R-PNSYVIVVEHDLS-------VLDYLSDFICCL 289 (605)
Q Consensus 240 lDEPts~LD~~~r~~~~~~i~~l~---~-~g~tvivvsHdl~-------~l~~~~D~i~vl 289 (605)
+||+++.++.. ...+.+.|.+++ . .|.++|++||+.. +...+.+||++-
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 99999999843 234455555543 2 3889999999987 567788888665
No 275
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.73 E-value=1.5e-09 Score=113.81 Aligned_cols=47 Identities=9% Similarity=-0.067 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 040300 214 VGDLSGGELQRFAIAVVAVQ------NAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~------~p~vlllDEPts~LD~~~r~~~~~~i~~l~~ 264 (605)
...+|+|++|++..|.+++. .|++++ ||++|.....++++.|.++..
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999987 688886 999999999999999988654
No 276
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.72 E-value=1.5e-09 Score=112.08 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=59.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-----cccC---c---ceeEeecCcCCCCC----cCcHHHHHHh--
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-----VEIP---E---FNVSYKPQKISPKF----QSTVRHLLHQ-- 436 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-----~~~~---~---~~i~y~~q~~~~~~----~~tv~~~~~~-- 436 (605)
|++++|+||||+|||||+++|+|+.+|++|.+.. .... . ..++|++|.+.... ..|+ +++..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f 251 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTF 251 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHH
Confidence 5799999999999999999999999999998741 1111 1 12689999875432 4577 54421
Q ss_pred h-h---------cc--C-CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHH
Q 040300 437 K-I---------RD--S-YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQR 475 (605)
Q Consensus 437 ~-~---------~~--~-~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QR 475 (605)
. . .. . ......+.++++.++|.+...+....|+.|++||
T Consensus 252 ~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 252 PDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 0 1 00 0 0112457889999999876666677777787773
No 277
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.71 E-value=1.6e-10 Score=121.07 Aligned_cols=142 Identities=19% Similarity=0.224 Sum_probs=79.1
Q ss_pred cEEEEECCCCChHHHHHHHHhcCC----CCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKL----KPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l----~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+.++|+||||+|||||+++|+|.+ .|..|.+.. .+.++...+. ... .....+++++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~-----------~~~~l~~~~~-----~~~-~~~v~~iDE~~~l 114 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV-----------KQGDMAAILT-----SLE-RGDVLFIDEIHRL 114 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC-----------SHHHHHHHHH-----HCC-TTCEEEEETGGGC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc-----------CHHHHHHHHH-----Hcc-CCCEEEEcchhhc
Confidence 789999999999999999999998 444443321 1111111100 000 0011122322211
Q ss_pred hhchhhhhc----C---------chHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 040300 180 VQGNVGQVL----D---------QKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSY 246 (605)
Q Consensus 180 ~~~~v~~~l----~---------~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~ 246 (605)
.. ++.+.+ . .......+...+..++|.. ..+.+..||+|++||+.++ .+
T Consensus 115 ~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------------~~ 176 (334)
T 1in4_A 115 NK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------------LE 176 (334)
T ss_dssp CH-HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE----------------EE
T ss_pred CH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce----------------ee
Confidence 10 111111 0 0011223334455566654 6778899999999999655 67
Q ss_pred CCHHHHHHHHHHHHHhhcC-CcEEEEEecCHhHHHhhcCE
Q 040300 247 LDVKQRLKAAQVVRSLLRP-NSYVIVVEHDLSVLDYLSDF 285 (605)
Q Consensus 247 LD~~~r~~~~~~i~~l~~~-g~tvivvsHdl~~l~~~~D~ 285 (605)
||+....++.++|+++++. + ++|+.+.+..++++
T Consensus 177 Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 177 LDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp CCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 7777778888888887642 3 47999888888764
No 278
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.71 E-value=5.3e-09 Score=97.73 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=41.5
Q ss_pred CceEEeCCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeC
Q 040300 82 DTTHRYGPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN 136 (605)
Q Consensus 82 ~~~~~yg~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~ 136 (605)
+++++||.. ..++.++ .+.+|++++|+||||||||||+|+|+|.+ |+.|++..
T Consensus 12 ~~~~~~g~~-~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~ 65 (158)
T 1htw_A 12 FSMLRFGKK-FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKS 65 (158)
T ss_dssp HHHHHHHHH-HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCC
T ss_pred HHHHHHHHH-HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEE
Confidence 455667643 2344444 35799999999999999999999999999 99998853
No 279
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.67 E-value=2.8e-09 Score=109.99 Aligned_cols=96 Identities=15% Similarity=0.004 Sum_probs=59.9
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeec-----cccC---c----ceeEeecCcCCCC----------------
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSD-----VEIP---E----FNVSYKPQKISPK---------------- 425 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~-----~~~~---~----~~i~y~~q~~~~~---------------- 425 (605)
|++++|+||||||||||+++|+|+.+|++|++.. .... . ..++|++|.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~ 248 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYF 248 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGS
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHH
Confidence 3789999999999999999999999999998742 1111 1 1478999886421
Q ss_pred CcCcHHHHHHhhhcc-CCCCHHHHHHHHhhcCCc-hhhccCcCcCCh
Q 040300 426 FQSTVRHLLHQKIRD-SYTHPQFVSDVMKPLLIE-QLMDQEVVNLSG 470 (605)
Q Consensus 426 ~~~tv~~~~~~~~~~-~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSG 470 (605)
...|+ +++...... .......+.++++.++|. +..++++..||+
T Consensus 249 ~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 249 KEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp TTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred Hhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 11222 222110000 011124578899999995 788999999995
No 280
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.67 E-value=1.1e-09 Score=120.50 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=98.1
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHc--CCCCCeeeee--ccccCcceeE-e--ecCcCCCCCcCcHHHH
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAG--LLKPDSVEDS--DVEIPEFNVS-Y--KPQKISPKFQSTVRHL 433 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~G--l~~p~~G~i~--~~~~~~~~i~-y--~~q~~~~~~~~tv~~~ 433 (605)
.+.+++..+ ..+.|.|++||||||+++.|.. +.+++.+++. ..+......+ | +|.-..... ....+.
T Consensus 159 pv~ldL~~~-----pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vv-td~~~a 232 (512)
T 2ius_A 159 PVVADLAKM-----PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVV-TDMKDA 232 (512)
T ss_dssp EEEEEGGGS-----CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCB-CSHHHH
T ss_pred EEEEEcccC-----ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceee-cCHHHH
Confidence 356666655 5799999999999999999876 4444433332 1111111111 0 111000011 112111
Q ss_pred HHhhhccCCCCHHHHHHHHhhcCCchhhc---cCcCcCChhHHHHH----------HHHHHHccCCC-EEEEecCCCCCC
Q 040300 434 LHQKIRDSYTHPQFVSDVMKPLLIEQLMD---QEVVNLSGGELQRV----------ALCLCLGKPAD-IYLIDEPSAYLD 499 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~---~~~~~LSGGe~QRv----------aiA~aL~~~p~-lllLDEPt~~LD 499 (605)
.. .+...........++++..|+.++.+ +....+||||+|+. .+|+++...|. ++++||+++.+|
T Consensus 233 ~~-~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~ 311 (512)
T 2ius_A 233 AN-ALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMM 311 (512)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHh
Confidence 10 00000001122236777777765433 23357899998763 35666778887 899999999998
Q ss_pred HHHHHHHHHHHHHHH---hcCCcEEEEEecCHH-------HHHhhcCEEEEE
Q 040300 500 SEQRIVAAKVIKRFI---LHAKKTAFVVEHDFI-------MATYLADRVIVY 541 (605)
Q Consensus 500 ~~~~~~l~~~l~~l~---~~~g~tiivvsHD~~-------~~~~~adrviv~ 541 (605)
.. ...+.+.|.+++ +..|.++|++||+.. ...++.+||.+-
T Consensus 312 ~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 312 TV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp HH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred hh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 43 334555555543 445889999999976 566778888763
No 281
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.63 E-value=3.7e-09 Score=109.13 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=67.2
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeC---CC-Ch---hhhhhh-hccchhhhh-HHHHHHHHHHHhhccc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNN---PP-DW---QEILTY-FRGSELQNY-FTRILEDNLKAIIKPQ 171 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~---~~-~~---~~~~~~-~~g~~l~~~-~~~~~~~~~~~~~~~q 171 (605)
..|++++|+|+||+|||||+|+|+ .+.|..|++.. .. .. ...... ..|..+|+. +... .+-..+..+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~---~l~~~lt~e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKV---EATMFVKPR 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSC---CGGGTSCGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcC---cccccCCHH
Confidence 479999999999999999999999 99999998853 10 00 000000 001111110 0000 000000000
Q ss_pred cc-ccchhh--hhchhhhhcCchHHHHHHHHHHhhcCCch-hhcccCCCCChHHHHHHHHHH
Q 040300 172 YV-DHIPKA--VQGNVGQVLDQKDERDMKADLCTDLDLNQ-VIDRNVGDLSGGELQRFAIAV 229 (605)
Q Consensus 172 ~~-~~~~~~--~~~~v~~~l~~~~~~~~~~~~l~~l~L~~-~~dr~v~~LSGGe~QRvaIA~ 229 (605)
.+ ...+.. ............+...++.++++.++|.+ ..++++..|||.++++++|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 000000 00000000111222456889999999986 889999999999999999886
No 282
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.60 E-value=7.2e-09 Score=107.19 Aligned_cols=111 Identities=16% Similarity=0.039 Sum_probs=62.7
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCC--CCeeeeec-----cccC---cceeEeecCcCCCCCcCcHHHHHHhhhccC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLK--PDSVEDSD-----VEIP---EFNVSYKPQKISPKFQSTVRHLLHQKIRDS 441 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~--p~~G~i~~-----~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~ 441 (605)
.+|+++||+||||||||||+++|+|++. |++|.+.. ...+ ...++++ |........++.+++....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~--- 153 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVS--- 153 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH---
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHH---
Confidence 3458999999999999999999999988 99987641 1110 0124455 4433323345555432110
Q ss_pred CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040300 442 YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLD 499 (605)
Q Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD 499 (605)
.+. .-......+..+.+.+ +|+..+.+...+++++|+|.|....+
T Consensus 154 --------~l~---~~~~~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 154 --------DLK---SGVPNVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp --------HHT---TTCSCEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred --------HHh---CCCCceeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 000 0000012223333333 33333334456789999999999887
No 283
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=98.60 E-value=2.4e-08 Score=86.59 Aligned_cols=58 Identities=36% Similarity=0.838 Sum_probs=48.6
Q ss_pred EEEeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
|++|.++|. .|+. .|.+.||.. +|.+++ +...|+.+.|+|||.|+..||++||++.+-
T Consensus 1 ~~~~~~~C~--~C~~~~C~~~CP~~-----ai~~~~--~~~~i~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 1 AFVVTDNCI--KCKYTDCVEVCPVD-----CFYEGP--NFLVIHPDECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp CEEECGGGT--TTCCCHHHHHCTTC-----CEEECS--SCEEECTTTCCCCCTTGGGCTTCCEEEGGG
T ss_pred CeECccccC--CccCcHHHHHcCcc-----ceEcCC--CcEEECcccCCChhhhHHhCCChhhhcccc
Confidence 578999996 5975 899999974 565543 568899999999999999999999998763
No 284
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=98.59 E-value=2.2e-08 Score=81.55 Aligned_cols=59 Identities=34% Similarity=0.736 Sum_probs=47.9
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
|+||.++|.--+| ..|.+.||.+ +|.+++ +...|+.+.|+|||.|+..||++||++...
T Consensus 1 a~i~~~~C~~c~C-~~C~~~Cp~~-----ai~~~~--~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (77)
T 1bc6_A 1 AYVITEPCIGTKD-ASCVEVCPVD-----CIHEGE--DQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59 (77)
T ss_dssp CEECCSTTTTCCC-CSSTTTCTTC-----CEEECS--SSEEECTTTCCSCCSHHHHSGGGSSEETTT
T ss_pred CEEeCccCCCCCc-chhHHhcccc-----cEEeCC--CcEEECcccCcCccCCHhhcCccceEecCC
Confidence 6899999964335 6899999973 555543 567899999999999999999999997654
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.58 E-value=4.1e-08 Score=114.30 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=27.2
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
+.+|+.++|+||||+|||||+++|+|.+.+
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999999998743
No 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.52 E-value=2.4e-07 Score=97.48 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHHHHHccC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHh----hcCCcEEEEEecCHh
Q 040300 224 RFAIAVVAVQN--AEIYMFDEPSSYL----------DV---KQRLKAAQVVRSL----LRPNSYVIVVEHDLS 277 (605)
Q Consensus 224 RvaIA~aL~~~--p~vlllDEPts~L----------D~---~~r~~~~~~i~~l----~~~g~tvivvsHdl~ 277 (605)
-+.++++++.+ |+++++|||++.+ |+ .+...+.+.+++| .+.+.+||+++|-..
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 45577777654 9999999999998 33 2222445555555 345999999999654
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.51 E-value=5.4e-08 Score=93.47 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=25.3
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+|++++|+||||||||||+++|+|+++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3568999999999999999999999974
No 288
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=98.50 E-value=5.5e-08 Score=79.36 Aligned_cols=59 Identities=37% Similarity=0.662 Sum_probs=47.5
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
++||.++|.--+| ..|.+.||.. +|.+++ +...|+.+.|++||.|++.||++||++...
T Consensus 1 p~i~~~~C~~c~C-~~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 59 (78)
T 1h98_A 1 PHVICEPCIGVKD-QSCVEVCPVE-----CIYDGG--DQFYIHPEECIDCGACVPACPVNAIYPEED 59 (78)
T ss_dssp CEEECGGGTTTCC-CHHHHHCTTC-----CEEECS--SSEEECTTTCCCCCTHHHHCTTCCEEEGGG
T ss_pred CEEEchhCCCCCc-ChhhhhcCcc-----ceEcCC--CEEEECcccCCcHhHHHHhCCccceEeccc
Confidence 4789999964336 6899999963 566643 567899999999999999999999997654
No 289
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.50 E-value=1.9e-07 Score=98.46 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=78.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhc
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL 455 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l 455 (605)
.++|+|+||+|||||++.|+|.. +..+.... ......++++++.. . .+..+
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~-~t~~~~~~~~~~~~---~------------------------~~~l~ 219 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAK-PEIASYPF-TTRGINVGQFEDGY---F------------------------RYQII 219 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSC-CEEECCTT-CSSCEEEEEEEETT---E------------------------EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CccCCCCC-eeeceeEEEEEecC---c------------------------eEEEE
Confidence 68999999999999999999875 32221100 00111222222110 0 00111
Q ss_pred CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe--cCHH
Q 040300 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLID-EPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVE--HDFI 529 (605)
Q Consensus 456 ~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLD-EPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvs--HD~~ 529 (605)
+.....+.++..+|+||+|++. +.+...++-++++| +|++++|......+...+.+... +..+|+|. ||+.
T Consensus 220 Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 220 DTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp ECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred eCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 1122334567789999998876 55555677789999 99999999988887777776532 77888888 8874
No 290
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=98.49 E-value=8.1e-08 Score=79.20 Aligned_cols=57 Identities=32% Similarity=0.669 Sum_probs=47.9
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc------cccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG------ICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g------~~~~~cp~~ai~i~nl 75 (605)
|++|.++|. .| ..|.+.||.+ +|.+++ +...|+.+.|++|| .|+..||++||++..-
T Consensus 1 ~~~~~~~C~--~C-~~C~~~CP~~-----ai~~~~--~~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 1 ALMITDECI--NC-DVCEPECPNG-----AISQGD--ETYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp CEEECTTCC--CC-CTTGGGCTTC-----CEEECS--SSEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred CeEeCCCCc--Cc-cchHHHCChh-----heEcCC--CceEEchhhcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 689999996 68 4999999964 565643 56789999999999 9999999999998764
No 291
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.49 E-value=2.8e-07 Score=96.35 Aligned_cols=123 Identities=9% Similarity=0.169 Sum_probs=84.0
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|++|+|||||+.-++..... ....+.|+.- .++..++.....
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g~~Vl~fSl------Ems~~ql~~Rll---------- 94 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DDRGVAVFSL------EMSAEQLALRAL---------- 94 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TTCEEEEEES------SSCHHHHHHHHH----------
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeC------CCCHHHHHHHHH----------
Confidence 34778899999999999999999888754321 1234566542 345555432110
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEec
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHA-KKTAFVVEH 526 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tiivvsH 526 (605)
.....+.+..+.+ +.||+++.+|++.|...+.++++++.|+|+..+| .+...++++.++. +..+|||.|
T Consensus 95 -s~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 95 -SDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHHHHHhcCCCCEEEEec
Confidence 1111222233332 4799999999999999999999999999975533 5666777776666 789999975
No 292
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=98.46 E-value=9.8e-08 Score=82.46 Aligned_cols=59 Identities=32% Similarity=0.721 Sum_probs=48.1
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
|+||.++|.--+| ..|.+.||.+ +|.++. +.+.|+.+.|++||.|+..||++||++.+.
T Consensus 1 ~~i~~~~C~~C~c-~~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 59 (105)
T 2v2k_A 1 TYVIAEPCVDVKD-KACIEECPVD-----CIYEGA--RMLYIHPDECVDCGACEPVCPVEAIYYEDD 59 (105)
T ss_dssp CEEECGGGTTTCC-CHHHHHCTTC-----CEEECS--SCEEECTTTCCCCCCSGGGCTTCCEEEGGG
T ss_pred CEEecccCCCCCc-ChhhhhcCcc-----ccCcCC--CcEEEeCCcCcchhhHHHhCCccCEEecCC
Confidence 5789999974345 6899999973 566543 457899999999999999999999998754
No 293
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=98.46 E-value=9.2e-08 Score=88.49 Aligned_cols=61 Identities=25% Similarity=0.591 Sum_probs=50.0
Q ss_pred EEEeCCCCCcccccc----hhhcccCccccCceEEEEcCCCCc-eeeccccccccccccccCCcceEEEecCC
Q 040300 9 AIVSSDRCKPKKCRQ----ECKKSCPVVKTGKLCIEVTPAAKI-AFISEELCIGCGICVKKCPFEAIQIINLP 76 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~-~~i~~~~c~~~g~~~~~cp~~ai~i~nl~ 76 (605)
.+||.++|. .|+. .|.+.||. .+|.+++...+ ..|+.+.|++||.|++.||++||++.+..
T Consensus 3 ~~vd~~~C~--~C~~~~~~~C~~~CP~-----~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~ 68 (150)
T 1jnr_B 3 SFVNPEKCD--GCKALERTACEYICPN-----DLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRGYV 68 (150)
T ss_dssp EEECTTTCC--SCCSSSSCHHHHHCTT-----SCEEEETTTTEEEESCGGGCCCCCHHHHHCTTCCEEECCCT
T ss_pred eEECcccCC--CCCCcccccchhhcCc-----cCeEEecCCceeeeeCcccCcCHhHHHHhCCccceEecCcc
Confidence 468999996 6863 89999997 36777665444 46899999999999999999999998765
No 294
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.45 E-value=1.8e-07 Score=98.51 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.||||+|||||+..+++...+..|. +.|+.-..... .. ..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~----------VlyId~E~s~~---~~---ra------------- 106 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV----------AAFIDAEHALD---PV---YA------------- 106 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC----------EEEEESSCCCC---HH---HH-------------
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe----------EEEEecccccc---hH---HH-------------
Confidence 567888999999999999999999999876654443 34543321111 00 00
Q ss_pred HHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCH----------------HHHHHHHH
Q 040300 449 SDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLDS----------------EQRIVAAK 508 (605)
Q Consensus 449 ~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD~----------------~~~~~l~~ 508 (605)
+++++. .+.- ....+. + +-+.+++.++ ..|+++++|+-++-... .....+++
T Consensus 107 ----~rlgv~~~~l~i--~~~~~~-e-~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~ 178 (356)
T 3hr8_A 107 ----KNLGVDLKSLLI--SQPDHG-E-QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALR 178 (356)
T ss_dssp ----HHHTCCGGGCEE--ECCSSH-H-HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHH
T ss_pred ----HHcCCchhhhhh--hhccCH-H-HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHH
Confidence 011111 1100 011122 1 3344455443 46788888876655531 11123455
Q ss_pred HHHHHHhcCCcEEEEEecCH----------------HHHHhhcCEEEEEeC
Q 040300 509 VIKRFILHAKKTAFVVEHDF----------------IMATYLADRVIVYEG 543 (605)
Q Consensus 509 ~l~~l~~~~g~tiivvsHD~----------------~~~~~~adrviv~~g 543 (605)
.|.+++++.+.|||+|.|-. ..+..++|-++.|+.
T Consensus 179 ~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 179 KIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp HHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 56677777899999998861 235678898888873
No 295
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.42 E-value=1.3e-07 Score=90.16 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q 040300 475 RVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRF 513 (605)
Q Consensus 475 RvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 513 (605)
.+.+|++|+.+|+++++| ||++|..+..++++.|.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 467899999999999999 9999999999998888764
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.42 E-value=5.2e-09 Score=100.00 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 040300 224 RFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSL 262 (605)
Q Consensus 224 RvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l 262 (605)
.+.+|++++.+|+++++| ||+||...+.++++.|.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 467899999999999999 9999999999998888653
No 297
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.40 E-value=1.6e-07 Score=88.26 Aligned_cols=62 Identities=27% Similarity=0.562 Sum_probs=50.3
Q ss_pred EEEeCCCCCcccccc----hhhcccCccccCceEEEEcCCCCce-eeccccccccccccccCCcceEEEecCCc
Q 040300 9 AIVSSDRCKPKKCRQ----ECKKSCPVVKTGKLCIEVTPAAKIA-FISEELCIGCGICVKKCPFEAIQIINLPK 77 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~-~i~~~~c~~~g~~~~~cp~~ai~i~nl~~ 77 (605)
.+||.++|. .|+. .|.+.||.+ +|.++++..+. .|+.+.|++||.|++.||++||++.....
T Consensus 2 v~id~~~C~--gC~~c~~~~C~~~CP~~-----ai~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~ 68 (166)
T 3gyx_B 2 TYVDPSKCD--GCKGGEKTACMYICPND-----LMILDPEEMKAFNQEPEACWECYSCIKICPQGAITARPYAD 68 (166)
T ss_dssp EEECTTTCC--CCCSSSCCHHHHHCTTS-----CEEEETTTTEEEESCGGGCCCCCHHHHHCSSCCEEECCCTT
T ss_pred CEEcchhcC--CCCCCCcchhHHhCCcc-----ccEEecCCceeEecCcccCcccChHhHhCCccceEEecccc
Confidence 368999995 6864 899999963 67777654434 48889999999999999999999987643
No 298
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=98.39 E-value=2.7e-07 Score=70.32 Aligned_cols=54 Identities=20% Similarity=0.524 Sum_probs=41.8
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCcee--eccccccccccccccCCcceEEE
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAF--ISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
.+|.++|. .|+ .|.+.||. .|.+..+++++. ++++.|++||.|++.||.+||++
T Consensus 3 ~i~~~~C~--~C~-~C~~~Cp~------~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 3 VIDHEECI--GCE-SCVELCPE------VFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp EESSCCCS--SCC-GGGGTSTT------TEEEEECSSCEEESCTTCCCGGGGTGGGGSTTCCEEE
T ss_pred EEChhhCc--Chh-HHHHHCCH------HheecCCCCcEEEecChhhhhHHHHHHHhCCHhhEEc
Confidence 57899994 784 69999993 245522234555 48999999999999999999986
No 299
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.38 E-value=1.1e-07 Score=103.97 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=54.0
Q ss_pred CcCcCChhHHHHH--HHHHHHcc---------------CCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 464 EVVNLSGGELQRV--ALCLCLGK---------------PADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 464 ~~~~LSGGe~QRv--aiA~aL~~---------------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
..+.+||||+|-. +|+.++++ .-.+++|||. +-+|.+.....+++++++ |.=+|+++-
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP 450 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAP 450 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEES
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECc
Confidence 4678999999963 44444433 1248999999 999999999999999886 778899998
Q ss_pred CHHHHHhhcCEEEEE
Q 040300 527 DFIMATYLADRVIVY 541 (605)
Q Consensus 527 D~~~~~~~adrviv~ 541 (605)
+ .+..+.|.++.+
T Consensus 451 ~--~i~p~v~~~~~~ 463 (483)
T 3euj_A 451 E--NISPERGTTYKL 463 (483)
T ss_dssp S--SCCCSSSEEEEC
T ss_pred c--hhhhccCceEEE
Confidence 8 444557777764
No 300
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.36 E-value=4.5e-07 Score=95.58 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=52.2
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEe--cCHhH
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFD-EPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVE--HDLSV 278 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllD-EPts~LD~~~r~~~~~~i~~l~~~g~tvivvs--Hdl~~ 278 (605)
..+.++..+|+||+|++. +.+...++-++++| +|++++|......++..+..+.. ++.+|+|. ||+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 224 LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD 294 (357)
T ss_dssp TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC
T ss_pred ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC
Confidence 344677889999998876 55555677789999 99999999887777777766544 77888888 88753
No 301
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=98.35 E-value=2.7e-07 Score=69.77 Aligned_cols=51 Identities=31% Similarity=0.769 Sum_probs=41.2
Q ss_pred eCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEE
Q 040300 12 SSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
..++|. .|+ .|.+.||.+ .|.+++ ++..|+.+.|++||.|++.||++||++
T Consensus 4 i~~~C~--~C~-~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 4 INEACI--SCG-ACEPECPVN-----AISSGD--DRYVIDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp ECTTCC--CCC-TTGGGCTTC-----CEECCS--SSCEECTTTCCCCCHHHHTCTTCCEEE
T ss_pred ecccCc--Chh-hHHHHCCcc-----ccCcCC--CEEEeccccCcChhChHHHccccceec
Confidence 388994 785 799999974 444433 457889999999999999999999986
No 302
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.33 E-value=1.2e-07 Score=107.06 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=84.3
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCe-eeee--ccc--cCcceeEeecCcCCCCCcCcHHHH
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDS-VEDS--DVE--IPEFNVSYKPQKISPKFQSTVRHL 433 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~-G~i~--~~~--~~~~~i~y~~q~~~~~~~~tv~~~ 433 (605)
++.+++.+..| +.+.|+||||+|||||+++|++++.+.. |.+. ... .....++|+|+.....+.......
T Consensus 50 l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~ 124 (604)
T 3k1j_A 50 VEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREK 124 (604)
T ss_dssp HHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHH
T ss_pred HhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHh
Confidence 44555555555 6899999999999999999999999887 4332 111 112346777654211000000000
Q ss_pred HHhhh--c-----------------cCC---------CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccC
Q 040300 434 LHQKI--R-----------------DSY---------THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKP 485 (605)
Q Consensus 434 ~~~~~--~-----------------~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~ 485 (605)
..... + ... .......++ +|-..........+|+|++|++..++....+
T Consensus 125 ~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L---~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~ 201 (604)
T 3k1j_A 125 AKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGAL---LGDVRHDPFQSGGLGTPAHERVEPGMIHRAH 201 (604)
T ss_dssp HHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHH---HCEECCCCC----CCCCGGGGEECCHHHHTT
T ss_pred hccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhc---CceEEechhhcCCccccccccccCceeeecC
Confidence 00000 0 000 000001111 1211111122367999999999998888889
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040300 486 ADIYLIDEPSAYLDSEQRIVAAKVIKR 512 (605)
Q Consensus 486 p~lllLDEPt~~LD~~~~~~l~~~l~~ 512 (605)
+.+|+|||... |++..+..++++|++
T Consensus 202 ~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 202 KGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999988 899988888888875
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.33 E-value=1.4e-07 Score=90.89 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH--HhhcCEEEEEeC
Q 040300 217 LSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL--DYLSDFICCLYG 291 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l--~~~~D~i~vl~g 291 (605)
.|.|+.+|..++..+..+|+.+..+ ++.++|..+..+.+.+... .+.+||+.+|.+.+. ...+|.+++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678899999998888877644333 3455666666665555443 256788888988765 668999999964
No 304
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.31 E-value=1.4e-07 Score=92.94 Aligned_cols=37 Identities=30% Similarity=0.301 Sum_probs=21.9
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH-cCCCC
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA-GLLKP 400 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~-Gl~~p 400 (605)
.++++|++.+| ++++|+||||||||||+++|+ |++++
T Consensus 17 ~~~~sl~v~~G-----~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 17 QGPGSMLKSVG-----VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -----CCEECC-----CEEEEECSCC----CHHHHHHC----C
T ss_pred cCCCCcccCCC-----CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 46788888877 689999999999999999999 99854
No 305
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.30 E-value=7.9e-06 Score=100.64 Aligned_cols=137 Identities=13% Similarity=0.245 Sum_probs=79.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.||+|+|||||+..++....... .++.|+.-+.. ..++...
T Consensus 727 GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g----------~~VlyiS~Ees------~~ql~A~------------ 778 (1706)
T 3cmw_A 727 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----------KTCAFIDAEHA------LDPIYAR------------ 778 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------CCEEEECTTSC------CCHHHHH------------
T ss_pred CCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC----------CCeEEEeccch------HHHHHHH------------
Confidence 3588999999999999999999999987543221 13555543221 1111111
Q ss_pred HHHHhhcCC--chhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCC-H------------HHHHHHHHHHH
Q 040300 449 SDVMKPLLI--EQLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLD-S------------EQRIVAAKVIK 511 (605)
Q Consensus 449 ~~~l~~l~l--~~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD-~------------~~~~~l~~~l~ 511 (605)
.+++ +++.-.... +. + +-...++.+. .+|+++++|+-++-.. . .+.+++...++
T Consensus 779 -----~lGvd~~~L~i~~~~--~l-e-ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr 849 (1706)
T 3cmw_A 779 -----KLGVDIDNLLCSQPD--TG-E-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 849 (1706)
T ss_dssp -----HTTCCGGGCEEECCS--SH-H-HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred -----HcCCChhheEEecCC--cH-H-HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHH
Confidence 1111 111101111 22 2 3344454443 5799999999998763 1 12234555555
Q ss_pred H---HHhcCCcEEEEEecCH----------------HHHHhhcCEEEEEe
Q 040300 512 R---FILHAKKTAFVVEHDF----------------IMATYLADRVIVYE 542 (605)
Q Consensus 512 ~---l~~~~g~tiivvsHD~----------------~~~~~~adrviv~~ 542 (605)
+ ++++.+.+||+++|-. ..+...||-++.+.
T Consensus 850 ~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~ 899 (1706)
T 3cmw_A 850 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 899 (1706)
T ss_dssp HHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEE
Confidence 5 4567799999999821 24566788887774
No 306
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.30 E-value=4.4e-07 Score=105.15 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=59.9
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhcCCcEEEE-EecCHhHHHhhcCE
Q 040300 211 DRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSS-YLDVKQRLKAAQVVRSLLRPNSYVIV-VEHDLSVLDYLSDF 285 (605)
Q Consensus 211 dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts-~LD~~~r~~~~~~i~~l~~~g~tviv-vsHdl~~l~~~~D~ 285 (605)
+..+.-+|+|+++|..++.+++.+++++|+|||.. +||......+++.+........+|++ .||+.+.+..+.+.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 45677899999999999999999999999999997 89987766666666555444567777 49998877766553
No 307
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=98.28 E-value=3.2e-07 Score=78.74 Aligned_cols=57 Identities=30% Similarity=0.558 Sum_probs=43.7
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCC-------ceeeccccccccccccccCCcceEEEe
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAK-------IAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
..||.++|. .| ..|.+.||.. +|.+.+..+ ...++.+.|++||.|++.||++||++.
T Consensus 38 ~~id~~~C~--~C-g~C~~~CP~~-----ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 101 (103)
T 1xer_A 38 VGVDFDLCI--AD-GSCINACPVN-----VFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp EEEETTTCC--CC-CHHHHHCTTC-----CCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred EEEehhhCC--Ch-hhHHHHcCcc-----CeecccccCccccccceeecCcccccChhhHHHhccccceEec
Confidence 468999995 68 5799999963 344433211 246788999999999999999999875
No 308
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.28 E-value=5.3e-07 Score=98.52 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCC----------CCCCHHHHHHHHHHHHHHH---hcCCcEEEEEecCHHHH
Q 040300 470 GGELQRVALCLCLGKPADIYLIDEPS----------AYLDSEQRIVAAKVIKRFI---LHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 470 GGe~QRvaiA~aL~~~p~lllLDEPt----------~~LD~~~~~~l~~~l~~l~---~~~g~tiivvsHD~~~~ 531 (605)
|++++|..+++|....|.+|+|||+. ++.|.+....+..++..+- ...+..||.+||..+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 67888999999999999999999993 4677776666777776652 23467888999987654
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.28 E-value=2.5e-07 Score=91.14 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=19.8
Q ss_pred CCCcEEEEECCCCChHHHHHHHHh-cCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILA-GKLKP 129 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~-G~l~p 129 (605)
.+|+++||+||||||||||+++|+ |+++|
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 689999999999999999999999 99843
No 310
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.27 E-value=8.6e-07 Score=92.65 Aligned_cols=120 Identities=9% Similarity=0.131 Sum_probs=77.0
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+.+|+++.|.|++|+|||||+.-++.......+.+. +|....
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl----------~fSlEm---------------------------- 84 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA----------VFSLEM---------------------------- 84 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE----------EEESSS----------------------------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE----------EEeCCC----------------------------
Confidence 479999999999999999999888754321111110 111000
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
.......++......+++..+.+ ..||.++.+|++.|...+.+++++|.|+|+..++ ++...+
T Consensus 85 ---------s~~ql~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~i 147 (338)
T 4a1f_A 85 ---------SAEQLALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQL 147 (338)
T ss_dssp ---------CHHHHHHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHH
T ss_pred ---------CHHHHHHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHH
Confidence 00011122222223334444443 4799999999999999999999999999875433 455667
Q ss_pred HHhhc-C-CcEEEEEec
Q 040300 260 RSLLR-P-NSYVIVVEH 274 (605)
Q Consensus 260 ~~l~~-~-g~tvivvsH 274 (605)
+++.+ . +..+|||.|
T Consensus 148 r~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 148 RKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHCTTEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEec
Confidence 77664 3 678888876
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.27 E-value=2.9e-07 Score=88.72 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=73.4
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhc
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL 455 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l 455 (605)
+++|+|+|||||||+.++|+++ |.. ++.. .++..... . .......++.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~-----------~id~----------d~~~~~~~-~--~~~~~~~~i~~~~ 54 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVP-----------LVDA----------DVVAREVV-A--KDSPLLSKIVEHF 54 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCC-----------EEEH----------HHHHHHTT-C--SSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCc-----------ccch----------HHHHHHHc-c--CChHHHHHHHHHh
Confidence 6899999999999999999983 210 0000 00000000 0 0011233444444
Q ss_pred CCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH--Hh
Q 040300 456 LIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA--TY 533 (605)
Q Consensus 456 ~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~--~~ 533 (605)
|...+ .|.|+.+|..++..+..+|+.+..+ ++.+++..+..+.+.+... .+.++|+.+|.+.+. ..
T Consensus 55 g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~ 122 (206)
T 1jjv_A 55 GAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTA 122 (206)
T ss_dssp CTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGG
T ss_pred CHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHh
Confidence 43321 3788999999999888887644332 3456676666655555432 356888889987665 56
Q ss_pred hcCEEEEEeCC
Q 040300 534 LADRVIVYEGQ 544 (605)
Q Consensus 534 ~adrviv~~g~ 544 (605)
.||++++++..
T Consensus 123 ~~d~vi~l~~~ 133 (206)
T 1jjv_A 123 LCDRILVVDVS 133 (206)
T ss_dssp GCSEEEEEECC
T ss_pred hCCEEEEEECC
Confidence 79999998743
No 312
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=98.26 E-value=2e-07 Score=72.71 Aligned_cols=56 Identities=20% Similarity=0.412 Sum_probs=43.2
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCcee-ec--cccccccccccccCCcceEEEe
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAF-IS--EELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-i~--~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.+||.++|. .| ..|.+.|| .- |.++++.+++. ++ ++.|++||.|++.||++||++.
T Consensus 4 ~~id~~~C~--~C-g~C~~~CP-~~-----~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 62 (64)
T 1dax_A 4 FYVDQDECI--AC-ESCVEIAP-GA-----FAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE 62 (64)
T ss_dssp CEECSTTCC--SC-CHHHHHCT-TT-----EEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECC
T ss_pred EEEccccCC--Cc-hHHHHhCC-cc-----EeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeee
Confidence 378999995 68 57999999 32 56655424443 44 7899999999999999999865
No 313
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.26 E-value=2.1e-07 Score=101.65 Aligned_cols=34 Identities=38% Similarity=0.476 Sum_probs=32.2
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
.+ +++||+||||||||||+++|+|+++|+.|++.
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 61 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN 61 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 57 99999999999999999999999999999874
No 314
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=98.25 E-value=1.8e-07 Score=76.59 Aligned_cols=56 Identities=29% Similarity=0.580 Sum_probs=45.8
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc------cccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG------ICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g------~~~~~cp~~ai~i~n 74 (605)
|++|.++|. .|+ .|.+.||.. .|.+++ +...|+.+.|++|| .|++.||++||++..
T Consensus 1 ~~~~~~~C~--~C~-~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (80)
T 1rgv_A 1 ALYINDDCT--ACD-ACVEECPNE-----AITPGD--PIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNP 62 (80)
T ss_dssp CBCCCSCCC--CCC-TTTTTCTTC-----CEECCS--SSCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCG
T ss_pred CeEeCCCCc--Chh-hHHHHcChh-----ccCcCC--CeeEEcchhCcCCCCcCCccHHHHhcCcccEEecC
Confidence 468899995 685 799999973 455543 45788999999999 999999999998764
No 315
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.25 E-value=6.7e-07 Score=103.63 Aligned_cols=76 Identities=13% Similarity=0.006 Sum_probs=59.5
Q ss_pred ccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EecCHHHHHhhcCEE
Q 040300 462 DQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA-YLDSEQRIVAAKVIKRFILHAKKTAFV-VEHDFIMATYLADRV 538 (605)
Q Consensus 462 ~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~l~~~~g~tiiv-vsHD~~~~~~~adrv 538 (605)
+..+.-+|+|+++|..++..++.+++++|+|||.. +||......+++.+.+.. ....++++ .|||.+.+..+.+..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence 45678899999999999999999999999999996 999887766666665542 23456666 499987777766643
No 316
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=98.24 E-value=4.2e-07 Score=74.60 Aligned_cols=60 Identities=22% Similarity=0.462 Sum_probs=45.1
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceee-----------ccccccccccccccCCcceEEEecCC
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFI-----------SEELCIGCGICVKKCPFEAIQIINLP 76 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i-----------~~~~c~~~g~~~~~cp~~ai~i~nl~ 76 (605)
...||.++|. .|+ .|.+.||- .+.++++ +++.+ ++++|++||.|++.||.+||++..-+
T Consensus 3 ~v~vd~~~Ci--gCg-~C~~~CP~------~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~~ 72 (81)
T 1iqz_A 3 YTIVDKETCI--ACG-ACGAAAPD------IYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP 72 (81)
T ss_dssp EEEECTTTCC--CCS-HHHHHCTT------TEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESSC
T ss_pred EEEEecccCc--ccC-hhhHhCch------heeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecCC
Confidence 4578999995 684 69999992 2344432 44443 36899999999999999999998755
Q ss_pred c
Q 040300 77 K 77 (605)
Q Consensus 77 ~ 77 (605)
.
T Consensus 73 ~ 73 (81)
T 1iqz_A 73 F 73 (81)
T ss_dssp C
T ss_pred C
Confidence 4
No 317
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=98.24 E-value=2.8e-07 Score=75.80 Aligned_cols=56 Identities=29% Similarity=0.708 Sum_probs=46.1
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc------cccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG------ICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g------~~~~~cp~~ai~i~n 74 (605)
++++.++|. .|+ .|.+.||.. .|.+++ +...|+.+.|++|| .|++.||++||++..
T Consensus 1 ~~~~~~~C~--~C~-~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 2fgo_A 1 SLKITDDCI--NCD-VCEPECPNG-----AISQGE--EIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDD 62 (82)
T ss_dssp CBCCCTTCC--CCC-TTGGGCTTC-----CEEECS--SSEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCT
T ss_pred CceeCCCCC--Chh-hHHHHCChh-----ccCCCC--CeEEEEchhCccCCCcCCCCHhHhhCCcccEEccC
Confidence 467889995 785 799999973 555543 45789999999999 999999999998764
No 318
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=98.23 E-value=2.1e-07 Score=71.06 Aligned_cols=53 Identities=28% Similarity=0.507 Sum_probs=41.2
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeec--cccccccccccccCCcceEEE
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFIS--EELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~--~~~c~~~g~~~~~cp~~ai~i 72 (605)
.|| ++|. .|+ .|.+.||.+ |.++++.+..+++ ++.|++||.|++.||.+||++
T Consensus 3 ~id-~~C~--~C~-~C~~~CP~~------~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 3 EVN-DDCM--ACE-ACVEICPDV------FEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp BCT-TTCC--CCC-HHHHHCTTT------EEECSSSSSEEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred EEC-CcCc--cch-HHHHhCCcc------EEECCCCcEEEeCCCccchHHHHHHHhhCChhhEEe
Confidence 467 8995 684 799999962 4455443335677 889999999999999999975
No 319
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.22 E-value=2.1e-06 Score=88.96 Aligned_cols=125 Identities=6% Similarity=0.083 Sum_probs=81.2
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|+.|+|||||+..++...-- ....+.|+.- .++..++....
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----------~g~~vl~~sl------E~s~~~l~~R~----------- 115 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----------NDDVVNLHSL------EMGKKENIKRL----------- 115 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----------TTCEEEEEES------SSCHHHHHHHH-----------
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cCCeEEEEEC------CCCHHHHHHHH-----------
Confidence 55788899999999999999999888743210 0123555542 24444443211
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEec
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT--AFVVEH 526 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t--iivvsH 526 (605)
......+.+..+.+.. ..||+++++|++.|...+.++++++.|+|.. ++ ..+...++++..+.+.. +|||.|
T Consensus 116 ~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~--~~---~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 116 IVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQ--SV---NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCC--BH---HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCC--CH---HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 0111122233333211 2499999999999999888899999999974 33 35666677776666777 888876
No 320
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=98.22 E-value=5.1e-07 Score=74.84 Aligned_cols=56 Identities=29% Similarity=0.666 Sum_probs=46.1
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc------cccccCCc-ceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG------ICVKKCPF-EAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g------~~~~~cp~-~ai~i~n 74 (605)
|++|.++|. .|+ .|.+.||.. +|.+++ +...|+.+.|++|| .|++.||+ +||++..
T Consensus 1 ~~~~~~~C~--~C~-~C~~~CP~~-----ai~~~~--~~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~ 63 (85)
T 2zvs_A 1 ALLITKKCI--NCD-MCEPECPNE-----AISMGD--HIYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDP 63 (85)
T ss_dssp CEEECTTCC--CCC-TTTTTCTTC-----CEECCS--SSCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTT
T ss_pred CEEeCCcCc--Chh-HHHHHCchh-----ccCcCC--CceEEeChhccCCCCcCCccHhhHhCcCCCCEEecC
Confidence 578999995 785 799999964 455543 45788999999999 99999999 9998764
No 321
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=98.21 E-value=2.8e-07 Score=70.50 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=41.0
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeec--cccccccccccccCCcceEEEe
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFIS--EELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~--~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.+|.++|. .|+ .|.+.||.+ +.++++ +++.+. ++.|++||.|+..||.+||++.
T Consensus 4 ~i~~~~C~--~C~-~C~~~Cp~~------~~~~~~-~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 4 RVDADACI--GCG-VCENLCPDV------FQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp EECTTTCC--SCC-SSTTTCTTT------BCCCSS-SCCCBSCSSCCSTTHHHHHHHCTTCCEECC
T ss_pred EEchhhCC--CCh-HHHHhCcHH------HeECCC-CCEeecCchhhHHHHHHHHHhCCHhHEEEe
Confidence 57999995 685 699999952 233333 444443 7899999999999999999864
No 322
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.21 E-value=4e-07 Score=86.63 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=26.6
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKLKPNLG 132 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G 132 (605)
|++++|+||||||||||+++|+|+++++.|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999975443
No 323
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.20 E-value=2e-06 Score=94.02 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHhh----cCCcEEEEEecCHhHHH
Q 040300 219 GGELQRFAIAVVAVQNAEIYMFDEPS----------SYLDVKQRLKAAQVVRSLL----RPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 219 GGe~QRvaIA~aL~~~p~vlllDEPt----------s~LD~~~r~~~~~~i~~l~----~~g~tvivvsHdl~~l~ 280 (605)
|++++|..++.|....|.+|++||+. ++.|......+.+++..+- ..+..||.+||+.+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 67788889999999999999999993 3566655555556665552 23678999999987765
No 324
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.20 E-value=1e-06 Score=93.11 Aligned_cols=65 Identities=8% Similarity=0.084 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCchhh----cccCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 040300 196 MKADLCTDLDLNQVI----DRNVGDLSGGELQRFAIA----VVA-VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR 264 (605)
Q Consensus 196 ~~~~~l~~l~L~~~~----dr~v~~LSGGe~QRvaIA----~aL-~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~ 264 (605)
.+.++++.+++.+.. ..++..+|+|+.|+++++ +++ ..+|++ +|+|++|......+.+.|.++..
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 345677777765432 456778899998988887 555 434454 89999999999999998887653
No 325
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.17 E-value=6.4e-07 Score=85.87 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.+|+++||+||||||||||+++|+|+++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999964
No 326
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.17 E-value=2.9e-09 Score=108.21 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=65.1
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----C---cceeEeecCcCC-CCCc
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----P---EFNVSYKPQKIS-PKFQ 427 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~---~~~i~y~~q~~~-~~~~ 427 (605)
.+.++++++..| ++|+||||+|||||+++|++.+. .|.+. ...+ . ...+++++|... ....
T Consensus 64 ~l~~~~~~~~~g-------vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 64 RFHEMGARIPKG-------VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHTTCCCCCE-------EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHcCCCCCCe-------EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 456666776666 78999999999999999999885 34332 1100 0 012334444321 1111
Q ss_pred CcHHHHHHhhhccCC-----CCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040300 428 STVRHLLHQKIRDSY-----THPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS 495 (605)
Q Consensus 428 ~tv~~~~~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt 495 (605)
.++.+.+........ ... ... ...++.+.+|||||+||+.|++|+..+|++ ||++.
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~-~~~---------~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGND-ERE---------QTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp EEEEETHHHHHCC--------CH-HHH---------HHHHHHHHHHTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred EEehhhhHhhhcccccccCCcch-HHH---------HHHHHHHHHHhCCCCCCCEEEEEecCCchh--CCHhH
Confidence 122221110000000 001 111 122334567999999999999999999987 67653
No 327
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.17 E-value=7.7e-06 Score=85.90 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=37.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc---CCcEEEEEecCHhHHHhh
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR---PNSYVIVVEHDLSVLDYL 282 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~---~g~tvivvsHdl~~l~~~ 282 (605)
..|.++++||+... |......+.+++.++.. .+.++|+++|+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 45889999999876 88877777777765554 578899999998765544
No 328
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.17 E-value=1.2e-07 Score=90.85 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 040300 225 FAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLL 263 (605)
Q Consensus 225 vaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~ 263 (605)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999 99999999999988887654
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.17 E-value=4.3e-07 Score=86.44 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=27.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
|++++|+||||||||||+++|+|++++..|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 4689999999999999999999999765543
No 330
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.15 E-value=7.1e-07 Score=92.15 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=33.2
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCC--CCCceee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLK--PNLGRFN 135 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~--p~~G~i~ 135 (605)
..+|+++||+|+||||||||+++|+|++. |+.|++.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 36899999999999999999999999988 9999874
No 331
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.13 E-value=6.9e-06 Score=86.29 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHhhc
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMKPL 455 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~l 455 (605)
.+.|.||+|+|||||++.+++.+.+..+ ..+.|+.... ..+..+.+ ..++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~---------~~~~~i~~~~----~~~~~~~~--------------~~l~~~l 98 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTT---------ARFVYINGFI----YRNFTAII--------------GEIARSL 98 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC---------CEEEEEETTT----CCSHHHHH--------------HHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcC---------eeEEEEeCcc----CCCHHHHH--------------HHHHHHh
Confidence 6899999999999999999998765421 1233333111 11222221 1122222
Q ss_pred CCchhhccCcCcCChhHHHHHHHHHHH-ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEEecCHHHHH
Q 040300 456 LIEQLMDQEVVNLSGGELQRVALCLCL-GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL--HAKKTAFVVEHDFIMAT 532 (605)
Q Consensus 456 ~l~~~~~~~~~~LSGGe~QRvaiA~aL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tiivvsHD~~~~~ 532 (605)
+.. .+....+.++.........- ..+|.+++|||+... |......+.+++.++.. ..+.++|+++|+..+..
T Consensus 99 ~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 99 NIP----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp TCC----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred Ccc----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 221 11122333333322221111 345889999999876 88887777777765532 14788999999886554
Q ss_pred hh
Q 040300 533 YL 534 (605)
Q Consensus 533 ~~ 534 (605)
.+
T Consensus 174 ~l 175 (389)
T 1fnn_A 174 NL 175 (389)
T ss_dssp TS
T ss_pred Hh
Confidence 43
No 332
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=98.11 E-value=7.2e-07 Score=72.57 Aligned_cols=59 Identities=27% Similarity=0.638 Sum_probs=42.9
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCC----c--eeeccccccccccccccCCcceEEEecCC
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAK----I--AFISEELCIGCGICVKKCPFEAIQIINLP 76 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~--~~i~~~~c~~~g~~~~~cp~~ai~i~nl~ 76 (605)
++|.++|. .|+ .|.+.||.. +|.+++.++ . ..++.+.|++||.|+..||++||++....
T Consensus 4 ~~~~~~C~--~Cg-~C~~~CP~~-----a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~ 68 (80)
T 1jb0_C 4 VKIYDTCI--GCT-QCVRACPTD-----VLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYL 68 (80)
T ss_dssp EEEETTCC--CCC-HHHHHCTTC-----CCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEEEC
T ss_pred cccCCcCc--Chh-HHHHHCCcc-----cccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeeeec
Confidence 56889995 785 799999964 334433111 1 23567899999999999999999876543
No 333
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.10 E-value=8.6e-08 Score=97.21 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=25.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+| ++|+||||+|||||+++|++.+. .|.+
T Consensus 73 ~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i 102 (278)
T 1iy2_A 73 PKG--VLLVGPPGVGKTHLARAVAGEAR--VPFI 102 (278)
T ss_dssp CCE--EEEECCTTSSHHHHHHHHHHHTT--CCEE
T ss_pred CCe--EEEECCCcChHHHHHHHHHHHcC--CCEE
Confidence 456 99999999999999999999874 4544
No 334
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.10 E-value=1.4e-06 Score=89.73 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=28.9
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
..|++++|+|+||||||||+|+|+|+.+|+.|++.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 37999999999999999999999999999999875
No 335
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.09 E-value=1.8e-06 Score=82.75 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=28.9
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
+.+|++++|+|||||||||++++|++.+.|+.|
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 345689999999999999999999999977766
No 336
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.09 E-value=7.5e-08 Score=96.14 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+| ++|+||||+|||||+++|++.+. .|.+
T Consensus 49 ~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i 78 (254)
T 1ixz_A 49 PKG--VLLVGPPGVGKTHLARAVAGEAR--VPFI 78 (254)
T ss_dssp CSE--EEEECCTTSSHHHHHHHHHHHTT--CCEE
T ss_pred CCe--EEEECCCCCCHHHHHHHHHHHhC--CCEE
Confidence 456 99999999999999999999874 4544
No 337
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.09 E-value=6e-09 Score=104.15 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=72.0
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeee--cccc----C---cceeEeecCcCCC-CCc
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS--DVEI----P---EFNVSYKPQKISP-KFQ 427 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~--~~~~----~---~~~i~y~~q~~~~-~~~ 427 (605)
.+.++++++..| +.|+||||+|||||+++|++... .|.+. +... . ...+++++|.... ...
T Consensus 40 ~~~~~~~~~~~g-------~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 40 RFHEMGARIPKG-------VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHTTCCCCSE-------EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHcCCCCCCe-------EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 356666666666 78999999999999999999875 33332 1100 0 0123344443211 111
Q ss_pred CcHHHHHHh-h-hccC---CCCHHHHHHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCC------
Q 040300 428 STVRHLLHQ-K-IRDS---YTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSA------ 496 (605)
Q Consensus 428 ~tv~~~~~~-~-~~~~---~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~------ 496 (605)
.++.+.+.. . .+.. .... ... ...++.+..|||||+||+.|++|+..+|++ ||++..
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~-~~~---------~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~ 178 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGND-ERE---------QTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFD 178 (254)
T ss_dssp EEEEETHHHHHC---------CH-HHH---------HHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTSSC
T ss_pred EEEehhhhhhhcccCccccccch-HHH---------HHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCcCC
Confidence 111111110 0 0000 0001 111 112333567999999999999999999987 677653
Q ss_pred ------CCCHHHHHHHHH
Q 040300 497 ------YLDSEQRIVAAK 508 (605)
Q Consensus 497 ------~LD~~~~~~l~~ 508 (605)
..|.+.|..+++
T Consensus 179 ~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 179 RQIAIDAPDVKGREQILR 196 (254)
T ss_dssp EEEECCSCCHHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHH
Confidence 246666666554
No 338
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.08 E-value=1.5e-05 Score=83.48 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=78.5
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
|-+.+|+++.|.||+|+|||||+..++.. .++..|. ...++.|+.-+.. + ....+......... +.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg------~~~~vlyi~~E~~--~--~~~~l~~~~~~~g~-~~- 184 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY------PGGKIIFIDTENT--F--RPDRLRDIADRFNV-DH- 184 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB------CCCEEEEEESSSC--C--CHHHHHHHHHHTTC-CH-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC------CCCeEEEEECCCC--C--CHHHHHHHHHHcCC-CH-
Confidence 56888899999999999999999998874 3222110 1124556654321 1 12222111000111 11
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhHH-HHHHHHHHHc----cCCCEEEEecCCCCCCHH--------H----HHHHHHH
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGEL-QRVALCLCLG----KPADIYLIDEPSAYLDSE--------Q----RIVAAKV 509 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe~-QRvaiA~aL~----~~p~lllLDEPt~~LD~~--------~----~~~l~~~ 509 (605)
.++++.+-+. ...++.+. +.+..++.++ .+++++++|+.++.+... . ...++..
T Consensus 185 --~~~l~~l~~~-------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~ 255 (343)
T 1v5w_A 185 --DAVLDNVLYA-------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSR 255 (343)
T ss_dssp --HHHHHTEEEE-------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHH
T ss_pred --HHHHhceeEe-------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 1233322111 11233333 3444455554 679999999999887542 1 2455566
Q ss_pred HHHHHhcCCcEEEEEecCHHH
Q 040300 510 IKRFILHAKKTAFVVEHDFIM 530 (605)
Q Consensus 510 l~~l~~~~g~tiivvsHD~~~ 530 (605)
|++++++.+.+||+++|-...
T Consensus 256 L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 256 LQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHhCCEEEEEeeceec
Confidence 677777779999999997543
No 339
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.07 E-value=2.2e-05 Score=82.57 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=29.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+|+++.|.||||+|||||+..+++...+..|.+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 5899999999999999999999998876655543
No 340
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.06 E-value=1.8e-06 Score=82.65 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=29.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G 132 (605)
.+|++++|+|+|||||||++++|++.+.|+.|
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 58999999999999999999999999977655
No 341
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.06 E-value=1.9e-06 Score=97.21 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=40.2
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 040300 214 VGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRS 261 (605)
Q Consensus 214 v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~ 261 (605)
...+|+|++|++..++....++.+|+|||... |++.....+.++|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 36799999999999999999999999999988 899988888888874
No 342
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=98.05 E-value=1.5e-06 Score=67.67 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=42.6
Q ss_pred EEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCce-eec----c-ccccccccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIA-FIS----E-ELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~i~----~-~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.++|.++|. .| ..|.+.||- .|.++++ +++ +++ + ..|++||.|++.||.+||++..
T Consensus 4 ~~id~~~C~--~C-~~C~~~Cp~------~~~~~~~-~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~ 65 (66)
T 1sj1_A 4 VSVDQDTCI--GD-AICASLCPD------VFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EEECTTTCC--CC-CHHHHHCTT------TEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEECcccCc--Cc-hHHHHhCCc------eEEECCC-CceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence 368999995 68 579999992 4566543 444 444 4 5689999999999999999864
No 343
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.04 E-value=1.6e-07 Score=92.77 Aligned_cols=52 Identities=33% Similarity=0.501 Sum_probs=39.8
Q ss_pred ceEEEecCCcccCCCceEEeCCCceeeecCCCCCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 68 EAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 68 ~ai~i~nl~~~~~~~~~~~yg~~~f~l~~l~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
..|++.|+.. .|+. +|.+. + ++++|+||||||||||+++|+|.+.|+.|.+.
T Consensus 8 ~~l~l~~~~~--------~~~~-~~~~~------~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 8 RSLTLINWNG--------FFAR-TFDLD------E-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp EEEEEEEETT--------EEEE-EECHH------H-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred eEEEEEeeec--------ccCC-EEEEc------C-cEEEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 4677777654 2332 34442 3 89999999999999999999999999999763
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.04 E-value=2e-06 Score=82.08 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=32.3
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 040300 476 VALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFI 514 (605)
Q Consensus 476 vaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 514 (605)
...|++|+.+|+++++| ||++|.....++++.|.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999 99999999999998887754
No 345
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=98.03 E-value=1.6e-06 Score=82.15 Aligned_cols=55 Identities=36% Similarity=0.746 Sum_probs=40.7
Q ss_pred eCCCCCcccccchhhcccCccccCceEEEEcCCC--------------CceeeccccccccccccccCCcceEEEec
Q 040300 12 SSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAA--------------KIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
|.|+|. .|+ .|...||.. +|.+.... ....++.+.|++||.|+..||++||.+.+
T Consensus 49 d~~~Ci--~C~-~C~~~CP~~-----ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 117 (182)
T 3i9v_9 49 GLEKCI--GCS-LCAAACPAY-----AIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGY 117 (182)
T ss_dssp SCBSCC--CCC-HHHHHCTTC-----CEEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCSSSCEEECS
T ss_pred CCccCc--ccc-cchhhCCcc-----cEEeecccccccccccccccccceeecCCCcCcChhChhhhCCccceEecC
Confidence 346784 685 799999974 33333211 13467888999999999999999999875
No 346
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.00 E-value=2.4e-06 Score=80.76 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
.+|++++|+||||||||||++.|++.+++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 47999999999999999999999998764
No 347
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.99 E-value=2.8e-06 Score=80.03 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=33.2
Q ss_pred eeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 360 GNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 360 ~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
++++|++.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g------~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG------FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS------EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC------cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 5677777766 79999999999999999999998887653
No 348
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.99 E-value=1e-05 Score=85.48 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=46.0
Q ss_pred HHHHhhcCCchhh----ccCcCcCChhHHHHHHHH----HHH-ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 040300 449 SDVMKPLLIEQLM----DQEVVNLSGGELQRVALC----LCL-GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFIL 515 (605)
Q Consensus 449 ~~~l~~l~l~~~~----~~~~~~LSGGe~QRvaiA----~aL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 515 (605)
.++++.+++.+.. ..++..+|+|++||+.++ +.+ ..+|++ +|+|++|......+.+.|.++..
T Consensus 282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4566666654322 345677899988988877 666 444454 89999999999999999988654
No 349
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=97.97 E-value=2.6e-06 Score=91.74 Aligned_cols=58 Identities=29% Similarity=0.645 Sum_probs=45.7
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceee-ccccccccccccccCCcceEEE-ec
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFI-SEELCIGCGICVKKCPFEAIQI-IN 74 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i-~~~~c~~~g~~~~~cp~~ai~i-~n 74 (605)
+.++|.++|. .|+ .|.+.||.+ +|.... .....| +++.|++||.|+..||++||.+ .+
T Consensus 27 ~i~~d~~kCi--~Cg-~C~~~CP~~-----ai~~~~-~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 86 (421)
T 1hfe_L 27 FVQIDEAKCI--GCD-TCSQYCPTA-----AIFGEM-GEPHSIPHIEACINCGQCLTHCPENAIYEAQS 86 (421)
T ss_dssp SEEECTTTCC--CCC-HHHHHCTTC-----CCBCCT-TSCCBCCCGGGCCCCCTTGGGCTTCCEEESCC
T ss_pred eEEECcccCC--Ccc-HHHHhcCcC-----ceeccc-ccceeecChhhCCchhhHHHhhCcCCcccccc
Confidence 5789999995 795 799999984 444333 223345 8999999999999999999988 54
No 350
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.97 E-value=1.5e-06 Score=89.77 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
+.+|++++|+|+||+|||||+|+|+|...|..|++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 357999999999999999999999999999999875
No 351
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=97.97 E-value=3.3e-06 Score=92.19 Aligned_cols=59 Identities=24% Similarity=0.605 Sum_probs=49.7
Q ss_pred EEEeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 9 AIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
..++.++|. .|.. .|.+.||. .+|...+.++++.|+++.|+|||.|++.||++||++.+
T Consensus 177 i~~~~~~C~--~C~~~~Cv~aCP~-----gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~~AI~~~~ 236 (512)
T 1q16_B 177 MMYLPRLCE--HCLNPACVATCPS-----GAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNW 236 (512)
T ss_dssp CEEEEECCC--CCSSCHHHHTCTT-----CCEEEETTTCCEEECTTTCCCCCCHHHHCTTCCEEEET
T ss_pred EEecCccCc--CCCCchhhhhCCc-----CcEEeecCCCeEEECHHHCCCchHHHhhCCccceeccc
Confidence 456888996 5975 89999995 36777655678999999999999999999999998875
No 352
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.96 E-value=6e-06 Score=85.48 Aligned_cols=122 Identities=11% Similarity=0.182 Sum_probs=75.0
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCceeeCCCChhhhhhhhccchhhhhHHHHHHHHHHHhhcccccccchhh
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKA 179 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~q~~~~~~~~ 179 (605)
+.+|+++.|.|++|+|||||+.-++...--....+ .+|...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~v----------l~~slE----------------------------- 105 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVV----------NLHSLE----------------------------- 105 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEE----------EEEESS-----------------------------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE----------EEEECC-----------------------------
Confidence 46999999999999999999888774321000000 001000
Q ss_pred hhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 040300 180 VQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV 259 (605)
Q Consensus 180 ~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i 259 (605)
........++......+++..+.+.. ..||.++.+|++.|...+.++.+++.|+|.. ++. ++...+
T Consensus 106 --------~s~~~l~~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~--~~~---~i~~~i 171 (315)
T 3bh0_A 106 --------MGKKENIKRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQ--SVN---YIWSKT 171 (315)
T ss_dssp --------SCHHHHHHHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCC--BHH---HHHHHH
T ss_pred --------CCHHHHHHHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCC--CHH---HHHHHH
Confidence 00011122222223333444443222 2399999999999999999999999999874 433 355666
Q ss_pred HHhhcC-CcE--EEEEec
Q 040300 260 RSLLRP-NSY--VIVVEH 274 (605)
Q Consensus 260 ~~l~~~-g~t--vivvsH 274 (605)
+++.++ +.. +|||.|
T Consensus 172 ~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 172 RQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHTSSSCCEEEEEEC
T ss_pred HHHHHhcCCCCeEEEEeC
Confidence 666543 666 888887
No 353
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.95 E-value=4.1e-06 Score=100.07 Aligned_cols=66 Identities=23% Similarity=0.743 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCc-ceEEEecCC
Q 040300 5 LTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPF-EAIQIINLP 76 (605)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~-~ai~i~nl~ 76 (605)
...++.+|.|+|. .| ..|.+.||.. +-.+|.+++..+++.++ +.|+|||.|++.||. +||++..-+
T Consensus 942 ~~~~~~id~~~C~--~C-g~C~~~CP~~--~~~ai~~~~~~~~~~~~-~~C~~Cg~C~~~CP~~~Ai~~~~~~ 1008 (1025)
T 1gte_A 942 EQVVAVIDEEMCI--NC-GKCYMTCNDS--GYQAIQFDPETHLPTVT-DTCTGCTLCLSVCPIIDCIRMVSRT 1008 (1025)
T ss_dssp SCEEEEECTTTCC--CC-CHHHHHHHHH--SCSCEEECTTTCCEEEC-TTCCCCCHHHHHCSSTTTEEEEECC
T ss_pred ccceEEEEcccCc--cc-CHHHHhcCcc--ccCCEEEeCCCceEEeC-ccCCChhHHHhhCCCCCCEEEecCc
Confidence 4567899999995 69 5799999973 33478887765678888 899999999999999 999988644
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.92 E-value=4.4e-06 Score=78.59 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=29.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.+| +.+|+|+|||||||++++|.+.+.+..|..
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 367 999999999999999999999998876653
No 355
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=97.92 E-value=1.3e-06 Score=92.48 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=45.3
Q ss_pred EeCCCCCccccc-chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEE
Q 040300 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQ 71 (605)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~ 71 (605)
||.++| .+.|. ..|++.||. .||..++++++..|+++.|++||.|++.||++||+
T Consensus 202 id~~~c-~~~Ce~~~Cv~~CP~-----~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~ 257 (366)
T 3mm5_B 202 PNDEAI-RKTCEIPSTVAACPT-----GALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLF 257 (366)
T ss_dssp CCHHHH-HHHCCHHHHHHTCTT-----CCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCC
T ss_pred Ecchhc-cccccccchhccCCc-----cceEecCCCCeEEEehhhCCCcchHHHhCCHhhcc
Confidence 566666 33453 689999996 37888766789999999999999999999999984
No 356
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.90 E-value=5.9e-05 Score=78.18 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=77.7
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCC-CCCe-eeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLL-KPDS-VEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQ 446 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~-~p~~-G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 446 (605)
|-+.+|+++.|.||+|+|||||+..++... .|.. |. ...++.|+.-+.. + ....+......... +.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg------~~~~vlyi~~e~~--~--~~~~l~~~~~~~g~-~~- 169 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG------LSGKAVYIDTEGT--F--RWERIENMAKALGL-DI- 169 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC------CSCEEEEEESSSC--C--CHHHHHHHHHHTTC-CH-
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC------CCCeEEEEECCCC--C--CHHHHHHHHHHhCC-CH-
Confidence 567888999999999999999998888642 3321 10 0124556543321 1 12222111000011 11
Q ss_pred HHHHHHhhcCCchhhccCcCcCChhH-HHHHHHHHHHc---cCCCEEEEecCCCCCCH--------HH----HHHHHHHH
Q 040300 447 FVSDVMKPLLIEQLMDQEVVNLSGGE-LQRVALCLCLG---KPADIYLIDEPSAYLDS--------EQ----RIVAAKVI 510 (605)
Q Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGe-~QRvaiA~aL~---~~p~lllLDEPt~~LD~--------~~----~~~l~~~l 510 (605)
.++++.+-+ ....+..+ .+.+..++.++ .+++++++|+.++.+.. .. ...++..|
T Consensus 170 --~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L 240 (324)
T 2z43_A 170 --DNVMNNIYY-------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 240 (324)
T ss_dssp --HHHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHH
T ss_pred --HHHhccEEE-------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHH
Confidence 122222111 11123332 24566666666 67999999999987643 12 24455566
Q ss_pred HHHHhcCCcEEEEEecCH
Q 040300 511 KRFILHAKKTAFVVEHDF 528 (605)
Q Consensus 511 ~~l~~~~g~tiivvsHD~ 528 (605)
++++++.+.+||++.|-.
T Consensus 241 ~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 241 TRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHhCCEEEEEccee
Confidence 666667799999999854
No 357
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.90 E-value=4.5e-06 Score=78.88 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=25.6
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+|++++|+||||||||||+++|++..++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 4689999999999999999999998864
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.88 E-value=2.6e-06 Score=85.20 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHh---cCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILA---GKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~---G~l~p~~G~i 134 (605)
.+|++++|+|+|||||||++++|+ |...|+.|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i 61 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce
Confidence 689999999999999999999999 9988888876
No 359
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=97.87 E-value=6.2e-06 Score=86.37 Aligned_cols=61 Identities=28% Similarity=0.673 Sum_probs=50.0
Q ss_pred EEEEeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEecC
Q 040300 8 IAIVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINL 75 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~nl 75 (605)
...++.++|. .|.. .|.+.||. | +|..+++++...|+.+.|+|||.|++.||++||.+.+.
T Consensus 143 ~~~~~~~~C~--~C~~~~Cv~~CP~---g--Ai~~~~~~g~v~id~~kCigCg~Cv~aCP~~Ai~~~~~ 204 (352)
T 2ivf_B 143 FFFYLARMCN--HCTNPACLAACPT---G--AIYKREDNGIVLVDQERCKGHRHCVEACPYKAIYFNPV 204 (352)
T ss_dssp ECEEEEECCC--CCSSCHHHHHCTT---C--CEEECTTTCCEEECTTTCCCCCHHHHHCTTCCEEEETT
T ss_pred EEEECCCCCc--CcCCccccccCCC---C--ceeecCCCCeEEechhhcCCchHHHhhcCccceecccc
Confidence 4467778884 6864 89999994 3 66666656788999999999999999999999998763
No 360
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.86 E-value=3.4e-05 Score=83.13 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=29.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
.++.+++++|+||+||||++..|++.+.+..+++
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 3589999999999999999999999887654444
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.85 E-value=2.9e-06 Score=84.86 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=31.3
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHH---cCCCCCeeeee
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLA---GLLKPDSVEDS 406 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~---Gl~~p~~G~i~ 406 (605)
.+|++++|+|||||||||++++|+ |+..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 356899999999999999999999 99999988763
No 362
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.84 E-value=4.2e-05 Score=80.05 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=24.7
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+.+|+++.|.|++|+|||||+..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998875
No 363
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.83 E-value=5.6e-07 Score=88.92 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCCCeeeee
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKPDSVEDS 406 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~ 406 (605)
++++|+||||||||||+++|+|++.|++|.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 57999999999999999999999999998763
No 364
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=97.81 E-value=8.3e-06 Score=78.58 Aligned_cols=57 Identities=25% Similarity=0.714 Sum_probs=44.8
Q ss_pred EEeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 10 IVSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.++.++|. .|+. .|.+.||.. +|...+ ++...|+++.|+|||.|+..||++||++.+
T Consensus 52 ~~~~~~C~--~C~~p~C~~~CP~g-----Ai~~~~-~g~~~id~~~CigC~~C~~~CP~~Ai~~~~ 109 (195)
T 2vpz_B 52 EFRPEQCL--HCENPPCVPVCPTG-----ASYQTK-DGLVLVDPKKCIACGACIAACPYDARYLHP 109 (195)
T ss_dssp EEEEEECC--CCSSCTTTTTCSSS-----CEEECT-TSCEEECTTTCCCCCHHHHHCTTCCCEECT
T ss_pred EECcccCc--CccCcHHHHhcCCC-----ceeccc-ccceeecCCCCCCcChhHhhCCCCCeEECC
Confidence 34556774 5764 899999964 455544 467899999999999999999999998754
No 365
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.80 E-value=1.5e-05 Score=83.29 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
..+..+.|.|++|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
No 366
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.80 E-value=1e-05 Score=78.27 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=28.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNL 131 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~ 131 (605)
.+|++++|+||||||||||++.|++.++|..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~ 36 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSF 36 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcE
Confidence 5899999999999999999999999987743
No 367
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=97.80 E-value=2.7e-06 Score=90.48 Aligned_cols=56 Identities=20% Similarity=0.524 Sum_probs=44.0
Q ss_pred EeCCCCCccccc-chhhcccCccccCceEEEEcC---CC---CceeeccccccccccccccCCcceEEE
Q 040300 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTP---AA---KIAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~---~~---~~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
||.|+| .+.|. -+|+.+||.. ||..++ +. ++..|+++.|++||.|++.||++||+.
T Consensus 213 id~e~~-~~~Ce~~~cv~~CPt~-----AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~ 275 (386)
T 3or1_B 213 IDHENL-AELCEIPLAVAACPTA-----AVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSD 275 (386)
T ss_dssp CCTTTH-HHHCCHHHHHHHCTTC-----CEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCC
T ss_pred echhhh-cccccchhhhhhCchh-----hccccccccCCccccccccCCCcCCccccHHHhCcHhhCcC
Confidence 677887 45564 6899999964 666643 22 358999999999999999999999963
No 368
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.79 E-value=6e-05 Score=76.50 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhhc----CCcEEEEEecCHhHH
Q 040300 218 SGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVK----------QRLKAAQVVRSLLR----PNSYVIVVEHDLSVL 279 (605)
Q Consensus 218 SGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~----------~r~~~~~~i~~l~~----~g~tvivvsHdl~~l 279 (605)
+++++++..++.+...+|.+|++||+.+.++.. ....+...+..+.. .+..||.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 356777778888888899999999998776532 22334444444432 235677788876543
No 369
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.77 E-value=1.2e-05 Score=77.86 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=26.3
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+|++++|+||||||||||+++|++.++|
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5689999999999999999999999887
No 370
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=97.77 E-value=9.6e-06 Score=83.17 Aligned_cols=57 Identities=35% Similarity=0.849 Sum_probs=44.9
Q ss_pred EeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEec
Q 040300 11 VSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
++.+.|. .|.. .|.+.||.. | +|...+ ++...|+++.|+|||.|+..||++||++.+
T Consensus 95 ~~~~~C~--~C~~~~C~~~CP~~--g--Ai~~~~-~g~v~id~~~CigCg~C~~~CP~~ai~~~~ 152 (294)
T 1kqf_B 95 IRKDGCM--HCEDPGCLKACPSA--G--AIIQYA-NGIVDFQSENCIGCGYCIAGCPFNIPRLNK 152 (294)
T ss_dssp EEEESCC--CBSSCHHHHHCCST--T--SEEEET-TSCEEECGGGCCCCCHHHHHCTTCCCEEET
T ss_pred ECcccCC--CcCChhhhhhCCcc--C--cccccc-ccceEeCcccCCCcchhhhcCCCCCcEecC
Confidence 4567884 7864 899999962 2 455443 477889999999999999999999998753
No 371
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.76 E-value=5e-05 Score=78.76 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=36.1
Q ss_pred HHHHHHHHHc---cCCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHhhc-CCcEEEEEecCHhH
Q 040300 223 QRFAIAVVAV---QNAEIYMFDEPSSYLDV--------KQR----LKAAQVVRSLLR-PNSYVIVVEHDLSV 278 (605)
Q Consensus 223 QRvaIA~aL~---~~p~vlllDEPts~LD~--------~~r----~~~~~~i~~l~~-~g~tvivvsHdl~~ 278 (605)
+.+..++.++ .+++++++|+.++.+.. ..+ ..++..|+.+++ .+.+||++.|-...
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 4566666666 67999999999987643 122 334444555554 38999999986544
No 372
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.74 E-value=1.2e-05 Score=77.09 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+|++++|+|+|||||||++++|+|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999999999976
No 373
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.71 E-value=7.2e-06 Score=78.89 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+.+|++++|+|+|||||||+++.|++.++|..|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 35799999999999999999999999987776665
No 374
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.71 E-value=1.5e-05 Score=76.52 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=24.0
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|++++|+||||||||||+++|+|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999999999999999976
No 375
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.70 E-value=1.9e-05 Score=85.59 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=36.4
Q ss_pred HccCCCEEEEecCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEecC
Q 040300 482 LGKPADIYLIDEPSAYLDS-EQRIVAAKVIKRFILHAKKTAFVVEHD 527 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~-~~~~~l~~~l~~l~~~~g~tiivvsHD 527 (605)
+..++++|++||+....+. ..+..+..++.++. +.++.+|++||+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~ 236 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDR 236 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESS
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECC
Confidence 3358999999999887764 67788889998875 458889999997
No 376
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.69 E-value=7.3e-05 Score=80.54 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHHHHHHh
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFVSDVMK 453 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~ 453 (605)
+.+++++|+||+||||++..|++.+.+..++ +.++.-+. +.....+.+. .+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~k----------Vllv~~D~---~r~~a~eqL~--------------~~~~ 149 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYK----------VGLVAADV---YRPAAYDQLL--------------QLGN 149 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCC----------EEEEEECC---SCHHHHHHHH--------------HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCe----------EEEEecCc---cchhHHHHHH--------------HHHH
Confidence 4689999999999999999999988765443 33333221 1101111111 1111
Q ss_pred hcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCC-CC--CCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q 040300 454 PLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPS-AY--LDSEQRIVAAKVIKRFILHAKKTAFVVE 525 (605)
Q Consensus 454 ~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt-~~--LD~~~~~~l~~~l~~l~~~~g~tiivvs 525 (605)
..++.-... ....+--...+-+++.+...++|++|+|+|. .+ .|.....++.++++.+ . ...++++++
T Consensus 150 ~~gv~~~~~--~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~-pd~vlLVlD 220 (433)
T 3kl4_A 150 QIGVQVYGE--PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-K-PDDVILVID 220 (433)
T ss_dssp TTTCCEECC--TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-C-CSEEEEEEE
T ss_pred hcCCceeec--cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-C-CcceEEEEe
Confidence 222211100 0011111222335666666789999999997 45 7887777777765554 2 234444443
No 377
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.68 E-value=7.3e-06 Score=78.69 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=26.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
+|++++|+||||||||||+++|++.+. ..|.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~ 54 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY-QKGK 54 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence 357999999999999999999999886 4454
No 378
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.68 E-value=5.6e-05 Score=81.81 Aligned_cols=44 Identities=7% Similarity=0.169 Sum_probs=37.0
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHhhcCCcEEEEEecCH
Q 040300 233 QNAEIYMFDEPSSYLDV-KQRLKAAQVVRSLLRPNSYVIVVEHDL 276 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~-~~r~~~~~~i~~l~~~g~tvivvsHdl 276 (605)
.+|++||+||+....+. .....++..+..+.+.++.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 567778889988887789999999973
No 379
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.68 E-value=8.2e-06 Score=78.33 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
..+|++++|+|+|||||||++++|++.+. ..|.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 36899999999999999999999999886 55643
No 380
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.68 E-value=0.00013 Score=74.05 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCH----------HHHHHHHHHHHHHHhc---CCcEEEEEecCHHH----H
Q 040300 469 SGGELQRVALCLCLGKPADIYLIDEPSAYLDS----------EQRIVAAKVIKRFILH---AKKTAFVVEHDFIM----A 531 (605)
Q Consensus 469 SGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~----------~~~~~l~~~l~~l~~~---~g~tiivvsHD~~~----~ 531 (605)
+++++.|..++.+...+|.+|++||+.+.++. .....++..+..+... .+..+|.+|++.+. +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 36777888888888889999999999877653 2223344444443211 23456777886421 2
Q ss_pred HhhcCEEEEE
Q 040300 532 TYLADRVIVY 541 (605)
Q Consensus 532 ~~~adrviv~ 541 (605)
.+-+++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 2235666554
No 381
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.68 E-value=9.3e-06 Score=78.11 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.9
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
+|++++|+|+||||||||+++|++.+++..|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 457999999999999999999999987776654
No 382
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=97.67 E-value=6.9e-06 Score=91.93 Aligned_cols=63 Identities=21% Similarity=0.522 Sum_probs=46.2
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCC--------CceeeccccccccccccccCCcceEEEec
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAA--------KIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
..++|.++|. .|+ .|.+.||.+ .|..+|.+.+.. ....|+++.|++||.|+..||++||++.+
T Consensus 139 ~i~~d~~kCi--~Cg-~Cv~~CP~~-~~~~ai~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~ 209 (574)
T 3c8y_A 139 SLTVDRTKCL--LCG-RCVNACGKN-TETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKS 209 (574)
T ss_dssp SEEEEGGGCC--CCC-HHHHHHHHH-HSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECC
T ss_pred cceeCcccCc--CCC-CccchhCch-hcCCceeeccCCccceecccccceechhhCCcchhHHHhhccCCccccc
Confidence 4578999995 785 599999962 112233333221 13568999999999999999999999875
No 383
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.64 E-value=8.2e-05 Score=73.18 Aligned_cols=45 Identities=4% Similarity=0.120 Sum_probs=31.2
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CCcEEEEEec-CH
Q 040300 232 VQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLR--PNSYVIVVEH-DL 276 (605)
Q Consensus 232 ~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~--~g~tvivvsH-dl 276 (605)
..+|+++|+..+.+.++......+..++..+.. ...++|+++| |+
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 357899999999989988766666555544322 1257888888 44
No 384
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.64 E-value=2.1e-05 Score=80.85 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCHHH-HHHHHHHHHHHHhcCCc--EEEEEecCHHHHHhhcCEE
Q 040300 468 LSGGELQRVALCLCLG--KPADIYLIDEPSAYLDSEQ-RIVAAKVIKRFILHAKK--TAFVVEHDFIMATYLADRV 538 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD~~~-~~~l~~~l~~l~~~~g~--tiivvsHD~~~~~~~adrv 538 (605)
+|+|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++....+. .+.+++|+-.-+..+.|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 898886 5566665 68999998 8999876 67788888887654453 5556667655555555544
No 385
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=97.63 E-value=7.8e-06 Score=87.47 Aligned_cols=41 Identities=29% Similarity=0.499 Sum_probs=35.8
Q ss_pred chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceE
Q 040300 23 QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70 (605)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai 70 (605)
.+|+..||.. ||..+ +++..|+++.|++||.|++.||+.++
T Consensus 261 ~~cv~~CPt~-----Ai~~~--~~~~~id~~~Ci~Cg~Ci~~CP~~~~ 301 (418)
T 3mm5_A 261 NEVVKLCPTG-----AIKWD--GKELTIDNRECVRCMHCINKMPKALK 301 (418)
T ss_dssp HHTGGGCTTC-----CEEEC--SSCEEECTTTCCCCCHHHHHCTTTEE
T ss_pred ccccccCCcc-----ccccC--CceeEEChhhcCccChhHHhCcHhhc
Confidence 5899999974 88875 47899999999999999999999654
No 386
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=97.63 E-value=1.6e-05 Score=77.71 Aligned_cols=59 Identities=15% Similarity=0.381 Sum_probs=46.4
Q ss_pred EeCCCCCcccccc-hhhcccCccccCceEEEEcCCCCceeecccccc--ccccccccCCcceEEEe
Q 040300 11 VSSDRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCI--GCGICVKKCPFEAIQII 73 (605)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~--~~g~~~~~cp~~ai~i~ 73 (605)
.+.++|. .|+. +|.+.||..-+| +|...++.+...|+++.|+ |||.|++.||++||++.
T Consensus 67 ~~~~~C~--~C~~p~C~~~CP~~~~g--Ai~~~~~~g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~ 128 (214)
T 1h0h_B 67 FFPDQCR--HCIAPPCKATADMEDES--AIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKV 128 (214)
T ss_dssp EEEECCC--CCSSCHHHHHHTTTCTT--SEEECTTTCCEEECGGGGGCSCHHHHHHHCTTCCCEEC
T ss_pred ecCCcCc--CcCCchhhccCCccccc--cEEecCCCCeEEEeHHHCccccccHHHHhcCCCCeEec
Confidence 3567774 6875 799999944344 5555554578999999999 99999999999999875
No 387
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.63 E-value=8.8e-05 Score=80.58 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 220 GELQRFAIAVVAVQNAEIYMFDEPSS-YLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 220 Ge~QRvaIA~aL~~~p~vlllDEPts-~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
.+.+....+...+.++|++||....+ ++... ..+++++++ +.++.+|+|-+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~---~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILY---RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHT---TCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHH---HcCCCEEEEEECccch
Confidence 46677778888888899877766554 34443 334555544 3578888888876654
No 388
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.63 E-value=0.00021 Score=73.99 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
..+|++++++|+||+||||++..|++.+.+..|++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV 136 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV 136 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 46899999999999999999999999998877765
No 389
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=97.63 E-value=2.7e-05 Score=78.93 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=39.8
Q ss_pred CCCCcccccc-hhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceEEEe
Q 040300 14 DRCKPKKCRQ-ECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 14 ~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
.+|. .|.. +|.+.||. +|..++ ++...|+++.|+|||.|++.||++||++.
T Consensus 66 ~~C~--~C~~p~C~~~CP~------Ai~~~~-~g~v~id~~~CigC~~C~~~CP~~Ai~~~ 117 (274)
T 1ti6_B 66 TPCM--HCENAPCVAKGNG------AVYQRE-DGIVLIDPEKAKGKKELLDTCPYGVMYWN 117 (274)
T ss_dssp ECCC--CCTTCHHHHHTTT------SEEECT-TSCEEECTTTTTTCGGGGGGCSSCCCEEE
T ss_pred CcCC--CCCChHHHhhChH------Hhhhcc-CCcEEechhhccchHHHHhhCccCCeEEE
Confidence 4553 4543 69999996 233433 47789999999999999999999999875
No 390
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.63 E-value=2.6e-05 Score=75.24 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.+|++++|+||||||||||++.|.+.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999875
No 391
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.63 E-value=1.4e-05 Score=83.57 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
..+.|.||+|+|||||++.+++.+.+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.62 E-value=1.8e-05 Score=77.78 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=25.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
..+|++++|.|+|||||||++++|+|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999999998
No 393
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.62 E-value=5.8e-05 Score=85.95 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=33.7
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 229 VVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 229 ~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
..-..++-++++| |+++++...+. +++.+.+.+..+|++.|.++..
T Consensus 94 ~l~~ad~~ilVvD-~~~g~~~qt~~----~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 94 ALEAADAALVAVS-AEAGVQVGTER----AWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHCSEEEEEEE-TTTCSCHHHHH----HHHHHHHTTCCEEEEEECGGGC
T ss_pred HHhhcCcEEEEEc-CCcccchhHHH----HHHHHHHccCCEEEEecCCchh
Confidence 3445788899999 99999987653 3333334578899999988753
No 394
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.60 E-value=0.00015 Score=76.12 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCC-cEEEEEec
Q 040300 215 GDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPN-SYVIVVEH 274 (605)
Q Consensus 215 ~~LSGGe~QRvaIA~aL~~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g-~tvivvsH 274 (605)
.+.++.+.|+..+++..+.+|+++||.-..+..|... .....+++.+...+ .+|++++.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 3467889999999999999999888874344455433 33456777776555 46666665
No 395
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.59 E-value=0.00022 Score=74.89 Aligned_cols=60 Identities=10% Similarity=-0.055 Sum_probs=41.7
Q ss_pred CcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 466 VNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 466 ~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
.+.++.++|+..+++..+.+|+++||.-..+..|... ....++++.+......++++++.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 3467889999999999999999888775444455443 34456666654333357777776
No 396
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.58 E-value=2.3e-05 Score=72.83 Aligned_cols=28 Identities=39% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
.|++++|+|+|||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998643
No 397
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.57 E-value=2.4e-05 Score=72.71 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=24.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
|++++|+|+|||||||++++|++.+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999998754
No 398
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=3.3e-05 Score=73.94 Aligned_cols=40 Identities=28% Similarity=0.180 Sum_probs=24.8
Q ss_pred CCCceeeecCC-CCCCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 88 GPNTFKLHRLP-VPRPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 88 g~~~f~l~~l~-~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
+.+++.+++++ ...+|++++|+|++||||||+.+.|++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 9 SGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44567788777 46789999999999999999999999765
No 399
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=97.54 E-value=1.9e-05 Score=88.55 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=50.2
Q ss_pred CCceEEEEEeCCCC----CcccccchhhcccCccccCceEEEE-cCCCC---ceeeccccccccccccccCCcceEEEec
Q 040300 3 DRLTRIAIVSSDRC----KPKKCRQECKKSCPVVKTGKLCIEV-TPAAK---IAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~---~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
+....|-|.|.+.| .|..| ..|.++||. .|+++ +.+++ +-.|+.+.|+.||.|.-+||+.+|+...
T Consensus 499 ~~~~hl~~~d~~~~~~~~~~~~~-~~c~~~CPa-----~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i~~~~ 572 (584)
T 2gmh_A 499 DQPAHLTLKDDSVPVNRNLSIYD-GPEQRFCPA-----GVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVV 572 (584)
T ss_dssp SSCCSEEESSTTHHHHTHHHHHC-CTHHHHCTT-----CCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEEECC
T ss_pred CCCCeEEEcCcccchhhchhhhc-chhhhcCCh-----hhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCCceeEC
Confidence 34567777777775 22444 579999997 47776 53345 7799999999999999999999997653
No 400
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.54 E-value=2.5e-05 Score=76.72 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.6
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGL 397 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl 397 (605)
..+|++++|.|+||||||||+++|+|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 355689999999999999999999998
No 401
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.53 E-value=3.3e-05 Score=74.51 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.2
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 347899999999999999999999865
No 402
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.53 E-value=0.00023 Score=76.95 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=75.2
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|++|+|||||+.-++.......| .++.|+.- .++..++.....
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---------~~vl~~sl------E~~~~~l~~R~~---------- 249 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---------VGVGIYSL------EMPAAQLTLRMM---------- 249 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---------CCEEEEES------SSCHHHHHHHHH----------
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CeEEEEEC------CCCHHHHHHHHH----------
Confidence 44788899999999999999999888764321111 23555432 234444332100
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
.....+.+..+. -+.||..+.+|+.-|...+.+.++++.|+|. +++. ++...++++..+.+..+|||.+
T Consensus 250 -~~~~~i~~~~l~---~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~---~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 250 -CSEARIDMNRVR---LGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLM---EVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp -HHHTTCCTTTCC---GGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHH---HHHHHHHHHHHHSCCCEEEEEC
T ss_pred -HHHcCCCHHHHh---CCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHcCCCEEEEcC
Confidence 000111122221 2468999999988887777777888888764 4443 4455566665555777887743
No 403
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.51 E-value=1.5e-05 Score=87.59 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCC------------CCHHHHHHHH
Q 040300 216 DLSGGELQRFAIAVVAVQNAEIYMFDEPSSY------------LDVKQRLKAA 256 (605)
Q Consensus 216 ~LSGGe~QRvaIA~aL~~~p~vlllDEPts~------------LD~~~r~~~~ 256 (605)
.||||++|+..|+.|+..+|++ |||+.-- .|..+|..++
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~--LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL 210 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQIL 210 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGG--SCTTTSSTTSSCCEEECCCCCHHHHHHHH
T ss_pred HhcccccCccEEEEEecCChhh--cCcccccccccceEEecCCCCHHHHHHHH
Confidence 5789999999999999999987 8988642 4666666544
No 404
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.50 E-value=4.1e-05 Score=71.40 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+|++++|+|+|||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999999874
No 405
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.50 E-value=4.5e-05 Score=71.12 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.8
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
+|++++|+|+|||||||++++|++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46899999999999999999999865
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.50 E-value=1.1e-05 Score=80.75 Aligned_cols=45 Identities=31% Similarity=0.426 Sum_probs=30.6
Q ss_pred eEEeCCCceeeecCC-CCCC---CcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 84 THRYGPNTFKLHRLP-VPRP---GQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 84 ~~~yg~~~f~l~~l~-~~~~---Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
+++|+.....|++++ .+.+ |++++|+|++||||||+.++|++.+.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 556722223455555 4567 99999999999999999999998653
No 407
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.49 E-value=4.3e-05 Score=92.17 Aligned_cols=66 Identities=24% Similarity=0.538 Sum_probs=50.2
Q ss_pred eEEEEEeCCCCCcccccchhhcccCccccCceEEEEc---CC-------------------CC---ceeecccccccccc
Q 040300 6 TRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVT---PA-------------------AK---IAFISEELCIGCGI 60 (605)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~-------------------~~---~~~i~~~~c~~~g~ 60 (605)
..+.++|.|+|- .|+ .|.+.||.. +|... ++ .+ ...|+++.|+|||.
T Consensus 678 ~~~p~~d~~kCi--~Cg-~Cv~vCP~~-----AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~ 749 (1231)
T 2c42_A 678 INVPQWVPENCI--QCN-QCAFVCPHS-----AILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGN 749 (1231)
T ss_dssp SEEEEECTTTCC--CCC-HHHHHCSSC-----CEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCH
T ss_pred ccceEEeCccCC--chh-hHHHhCCcc-----cccccccchHHHhhCcccccccccccccccccccceeechhhCCChhH
Confidence 356789999995 795 799999974 44331 10 01 35689999999999
Q ss_pred ccccCCc--ceEEEecCCccc
Q 040300 61 CVKKCPF--EAIQIINLPKDL 79 (605)
Q Consensus 61 ~~~~cp~--~ai~i~nl~~~~ 79 (605)
||..||. +||++.......
T Consensus 750 Cv~vCP~~~~AI~~~~~~~~~ 770 (1231)
T 2c42_A 750 CADICPPKEKALVMQPLDTQR 770 (1231)
T ss_dssp HHHHCSSSSCSEEEEEGGGTH
T ss_pred HHhhCCCCccCeEEecchhhh
Confidence 9999999 999999876533
No 408
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.48 E-value=2.3e-05 Score=87.24 Aligned_cols=34 Identities=32% Similarity=0.536 Sum_probs=31.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCceee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN 135 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i~ 135 (605)
+|++++|+||||+|||||+++|++.+.+..|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 7999999999999999999999999988877764
No 409
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=4.6e-05 Score=72.97 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=23.8
Q ss_pred eeeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCC
Q 040300 358 TQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 358 ~l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+++++|++.+| ++++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~-----~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAM-----VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CC-----CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCC-----CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567889988777 689999999999999999999765
No 410
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.48 E-value=6.2e-05 Score=72.30 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=28.0
Q ss_pred CCCCCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 98 PVPRPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 98 ~~~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
+.+.+|++++|+|++||||||+++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999999863
No 411
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.45 E-value=2.3e-05 Score=87.13 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=30.0
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
+.+|++++|+|+||||||||+++|+|.+.|++|
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 456689999999999999999999999999876
No 412
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.45 E-value=0.00041 Score=75.05 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=88.0
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCce-eeCCCChhhhhhhhccch-hhhhHHHHHHHHHHHhhcccccccch
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR-FNNPPDWQEILTYFRGSE-LQNYFTRILEDNLKAIIKPQYVDHIP 177 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~g~~-l~~~~~~~~~~~~~~~~~~q~~~~~~ 177 (605)
+.+|+++.|.|++|+|||||+.-++.......|. +. +|.... ......++.... ..+..+. +
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl----------~~slE~~~~~l~~R~~~~~--~~i~~~~---l- 260 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVG----------IYSLEMPAAQLTLRMMCSE--ARIDMNR---V- 260 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE----------EEESSSCHHHHHHHHHHHH--TTCCTTT---C-
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE----------EEECCCCHHHHHHHHHHHH--cCCCHHH---H-
Confidence 4689999999999999999998887654322221 10 111110 001111111000 0000000 0
Q ss_pred hhhhchhhhhcCchHHHHHHHHHHhhcCCchhhcccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH------
Q 040300 178 KAVQGNVGQVLDQKDERDMKADLCTDLDLNQVIDRNVGDLSGGELQRFAIAVVAV--QNAEIYMFDEPSSYLDV------ 249 (605)
Q Consensus 178 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~L~~~~dr~v~~LSGGe~QRvaIA~aL~--~~p~vlllDEPts~LD~------ 249 (605)
..+ .+. ..+..++...+..+.-..+.-.....+|..+.. +.++.+. .+++++++|..+.....
T Consensus 261 --~~g----~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~ 331 (444)
T 2q6t_A 261 --RLG----QLT-DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSG 331 (444)
T ss_dssp --CGG----GCC-HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBCC------
T ss_pred --hCC----CCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCC
Confidence 001 111 122233333333332222222234567777653 4455554 58999999998876543
Q ss_pred ----HHHHHHHHHHHHhhcC-CcEEEEEecC-------------Hh------HHHhhcCEEEEEeC
Q 040300 250 ----KQRLKAAQVVRSLLRP-NSYVIVVEHD-------------LS------VLDYLSDFICCLYG 291 (605)
Q Consensus 250 ----~~r~~~~~~i~~l~~~-g~tvivvsHd-------------l~------~l~~~~D~i~vl~g 291 (605)
.....+.+.|+.++++ +.+||+++|- +. .+.+.||.|+.|+.
T Consensus 332 ~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 332 ENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1223555666777664 8999999982 11 24667899998863
No 413
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.45 E-value=6.9e-05 Score=85.35 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=31.9
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q 040300 482 LGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMA 531 (605)
Q Consensus 482 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiivvsHD~~~~ 531 (605)
-..++-++++| |+.+++...+. +++.++ ..+.++|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~----~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTER-AWTVAE----RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHHH-HHHHHH----HTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHHH-HHHHHH----HccCCEEEEecCCchh
Confidence 35678899999 99999987663 333332 2478899999987753
No 414
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.44 E-value=0.00018 Score=70.76 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=32.3
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEec-CH
Q 040300 483 GKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILH-AKKTAFVVEH-DF 528 (605)
Q Consensus 483 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiivvsH-D~ 528 (605)
..+|+++|+..+.+.++......+..+++.+-.. ...++|+++| |.
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 3578999999999899887776666665544221 1258888998 53
No 415
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.42 E-value=2.6e-05 Score=86.63 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.0
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G 132 (605)
+.+|++++|+|+||||||||+++|+|.+.|+.|
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 468999999999999999999999999999886
No 416
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.40 E-value=0.00016 Score=74.94 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=32.5
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
+++|+..++ ++++|+|+||+||||++..|++.+.+..|++
T Consensus 97 ~l~~~~~~~-----~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV 136 (320)
T 1zu4_A 97 RIDFKENRL-----NIFMLVGVNGTGKTTSLAKMANYYAELGYKV 136 (320)
T ss_dssp CCCCCTTSC-----EEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccccCCCC-----eEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 455554444 7899999999999999999999998776654
No 417
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.38 E-value=5.5e-05 Score=78.43 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=23.6
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
++||+||||||||||+++|++++.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999873
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.37 E-value=0.0001 Score=67.59 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=24.0
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHc
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~G 396 (605)
+..+++.+| +.+|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g------~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG------INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE------EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC------eEEEECCCCCCHHHHHHHHHH
Confidence 444555454 799999999999999999874
No 419
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.37 E-value=0.00018 Score=74.12 Aligned_cols=42 Identities=7% Similarity=0.244 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhcCCcEEEEEec
Q 040300 233 QNAEIYMFDEPSSYL-DVKQRLKAAQVVRSLLRPNSYVIVVEH 274 (605)
Q Consensus 233 ~~p~vlllDEPts~L-D~~~r~~~~~~i~~l~~~g~tvivvsH 274 (605)
.++++|++||+-.-- +......+..++..+...+..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 469999999987633 336677788888887766777777665
No 420
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.00098 Score=70.02 Aligned_cols=125 Identities=15% Similarity=0.283 Sum_probs=68.4
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|++|+|||||...++...... ..++.|+.-+... + .. ...... .
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~----------g~~vlyid~E~s~--~-~~---~a~~~g--~------ 113 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----------GKTCAFIDAEHAL--D-PI---YARKLG--V------ 113 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----------TCCEEEEESSCCC--C-HH---HHHHTT--C------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC----------CCeEEEEeCCCCc--c-HH---HHHHcC--C------
Confidence 457788999999999999999998887543211 1134555433211 1 11 111100 0
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCH-H------------HHHHHHHHHHH-
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLDS-E------------QRIVAAKVIKR- 512 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD~-~------------~~~~l~~~l~~- 512 (605)
.++.+.-..+. + ++ |-+.+++.++ .+++++++|++++-... + +.+.+.+.+++
T Consensus 114 -------~~~~l~i~~~~--~-~e-~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L 182 (356)
T 1u94_A 114 -------DIDNLLCSQPD--T-GE-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 182 (356)
T ss_dssp -------CGGGCEEECCS--S-HH-HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHH
T ss_pred -------ChhheeeeCCC--C-HH-HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHH
Confidence 00111100111 2 22 3345556553 67999999999998741 1 11233444444
Q ss_pred --HHhcCCcEEEEEecCH
Q 040300 513 --FILHAKKTAFVVEHDF 528 (605)
Q Consensus 513 --l~~~~g~tiivvsHD~ 528 (605)
++++.+.+||+++|-.
T Consensus 183 ~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 183 AGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHTCEEEEEEC--
T ss_pred HHHHHHhCCEEEEEeccc
Confidence 4566799999999853
No 421
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.34 E-value=6.6e-05 Score=77.80 Aligned_cols=30 Identities=30% Similarity=0.628 Sum_probs=26.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCCC--CCCcee
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLK--PNLGRF 134 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~--p~~G~i 134 (605)
++||+|+||||||||+++|++++. |+.|.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 999999999999999999999987 455553
No 422
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.32 E-value=1.5e-05 Score=79.77 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=33.2
Q ss_pred eeecCCceeeeeeEEEEEee---ceeecCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 349 RYKYPTMVKTQGNFKLKVVE---GEFTDSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 349 ~~~y~~~~~~l~~~~l~v~~---G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
++.|.+....+++++|++.+ | ++++|+|++||||||++++|++.+.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g-----~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNG-----RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTT-----CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEecCcchhhhhhhhhhhhhcCC-----CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45562223467888888877 6 6899999999999999999998654
No 423
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.31 E-value=3.1e-05 Score=75.25 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.8
Q ss_pred CcEEEEECCCCChHHHHHHHHhcCC---CCCCcee
Q 040300 103 GQVLGLVGTNGIGKSTALKILAGKL---KPNLGRF 134 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G~l---~p~~G~i 134 (605)
+.+++|+|++||||||++++|++.+ .++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 5689999999999999999999876 4555554
No 424
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.30 E-value=0.00013 Score=70.03 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=25.3
Q ss_pred eecCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 371 FTDSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 371 ~~~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+.+|++++|+|++|||||||+++|++.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34457999999999999999999999864
No 425
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=97.30 E-value=8.9e-05 Score=60.66 Aligned_cols=26 Identities=35% Similarity=0.783 Sum_probs=23.3
Q ss_pred eeeccccccccccccccCCcceEEEe
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
++++++.|+|||.|++.||++||++.
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (82)
T 3eun_A 1 ALMITDECINCDVCEPECPNGAISQG 26 (82)
T ss_dssp CEEECTTCCCCCTTGGGCTTCCEEEC
T ss_pred CeEeCCCCcCccchHHHCChhheEcC
Confidence 46788899999999999999999874
No 426
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.23 E-value=4.6e-05 Score=74.02 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=26.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCC---CCCeeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLL---KPDSVED 405 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~---~p~~G~i 405 (605)
+.+++|+||+||||||++++|++.+ .++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 3589999999999999999999866 5566654
No 427
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.22 E-value=2.5e-05 Score=80.30 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHhhcC-Cc--EEEEEecCHhHHHhhcCEE
Q 040300 217 LSGGELQRFAIAVVAV--QNAEIYMFDEPSSYLDVKQ-RLKAAQVVRSLLRP-NS--YVIVVEHDLSVLDYLSDFI 286 (605)
Q Consensus 217 LSGGe~QRvaIA~aL~--~~p~vlllDEPts~LD~~~-r~~~~~~i~~l~~~-g~--tvivvsHdl~~l~~~~D~i 286 (605)
+|+|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++.+. +. .+.+++|+-.-++.+.|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 898886 4566665 78999999 7899866 66677788877653 43 5555667766666665554
No 428
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.22 E-value=0.00044 Score=70.68 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++..+.|.||+|+|||||+++|++.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 578899999999999999999999875
No 429
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=97.19 E-value=0.00013 Score=59.66 Aligned_cols=26 Identities=31% Similarity=0.692 Sum_probs=22.9
Q ss_pred eeeccccccccccccccCCcceEEEe
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
++|+.+.|+|||.|++.||++||.+.
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (82)
T 2fgo_A 1 SLKITDDCINCDVCEPECPNGAISQG 26 (82)
T ss_dssp CBCCCTTCCCCCTTGGGCTTCCEEEC
T ss_pred CceeCCCCCChhhHHHHCChhccCCC
Confidence 35778899999999999999999864
No 430
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=97.19 E-value=0.00011 Score=60.54 Aligned_cols=26 Identities=38% Similarity=0.882 Sum_probs=22.8
Q ss_pred eeeccccccccccccccCCcceEEEe
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
++|+++.|+|||.|++.||++||.+.
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (85)
T 2zvs_A 1 ALLITKKCINCDMCEPECPNEAISMG 26 (85)
T ss_dssp CEEECTTCCCCCTTTTTCTTCCEECC
T ss_pred CEEeCCcCcChhHHHHHCchhccCcC
Confidence 35777899999999999999999864
No 431
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=97.18 E-value=0.0001 Score=59.84 Aligned_cols=26 Identities=38% Similarity=0.768 Sum_probs=22.8
Q ss_pred eeeccccccccccccccCCcceEEEe
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
++++++.|+|||.|++.||++||.+.
T Consensus 1 ~~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (80)
T 1rgv_A 1 ALYINDDCTACDACVEECPNEAITPG 26 (80)
T ss_dssp CBCCCSCCCCCCTTTTTCTTCCEECC
T ss_pred CeEeCCCCcChhhHHHHcChhccCcC
Confidence 46778899999999999999999864
No 432
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.17 E-value=0.0013 Score=70.53 Aligned_cols=33 Identities=33% Similarity=0.220 Sum_probs=30.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+|++++++|+||+||||++..|++.+.+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V 129 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 799999999999999999999999998876665
No 433
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.13 E-value=9.7e-05 Score=69.20 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKP 129 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p 129 (605)
.+|++++|+|++||||||+++.|++.+.|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47999999999999999999999998755
No 434
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=97.13 E-value=0.0002 Score=72.46 Aligned_cols=58 Identities=16% Similarity=0.357 Sum_probs=46.3
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc----------c---cccccCCcceEEEe
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC----------G---ICVKKCPFEAIQII 73 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~----------g---~~~~~cp~~ai~i~ 73 (605)
.+.++|.++|. .| ..|.+.||.. +|.+.+.. +..+.|++| | .||+.||.+||++.
T Consensus 90 g~v~id~~~Ci--gC-~~C~~~CP~~-----Ai~~~~~~----~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~ 157 (274)
T 1ti6_B 90 GIVLIDPEKAK--GK-KELLDTCPYG-----VMYWNEEE----NVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFL 157 (274)
T ss_dssp SCEEECTTTTT--TC-GGGGGGCSSC-----CCEEETTT----TEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEE
T ss_pred CcEEechhhcc--ch-HHHHhhCccC-----CeEEEccc----CccccCCCchhhhhhhccCCCCcchhhhCCcCceEEc
Confidence 35789999995 68 5799999973 55665543 245689999 9 99999999999998
Q ss_pred cCC
Q 040300 74 NLP 76 (605)
Q Consensus 74 nl~ 76 (605)
++.
T Consensus 158 ~~~ 160 (274)
T 1ti6_B 158 KTT 160 (274)
T ss_dssp EEC
T ss_pred CCC
Confidence 765
No 435
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.11 E-value=0.0017 Score=66.81 Aligned_cols=158 Identities=10% Similarity=0.038 Sum_probs=79.9
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcC--CCCCeeeee-ccccC---cceeEeecCcCCCCCcCcHHHHHHhhhccCC
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGL--LKPDSVEDS-DVEIP---EFNVSYKPQKISPKFQSTVRHLLHQKIRDSY 442 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl--~~p~~G~i~-~~~~~---~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~ 442 (605)
|-+.+|+++.|.|++|+|||||+..++.. +.+..+-.. +.... ..++.|+.-+.. + ....+.........
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~--~--~~~~l~~~~~~~g~ 168 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT--F--RPERIMQMAEHAGI 168 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC--C--CHHHHHHHHHHHTC
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC--C--CHHHHHHHHHHcCC
Confidence 55778899999999999999999888753 221000000 00000 134566653321 1 12222111000011
Q ss_pred CCHHHHHHHHhhcCCchhhccCcCcCChhHH--HHHHHHHHHc---cCCCEEEEecCCCCCC--------HHH----HHH
Q 040300 443 THPQFVSDVMKPLLIEQLMDQEVVNLSGGEL--QRVALCLCLG---KPADIYLIDEPSAYLD--------SEQ----RIV 505 (605)
Q Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGe~--QRvaiA~aL~---~~p~lllLDEPt~~LD--------~~~----~~~ 505 (605)
+. .++++.+-+ ..-..++. +-+..++.++ .+++++++|.-++-.. ... ...
T Consensus 169 -~~---~~~~~~l~~--------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~ 236 (322)
T 2i1q_A 169 -DG---QTVLDNTFV--------ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGR 236 (322)
T ss_dssp -CH---HHHHHTEEE--------EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHH
T ss_pred -CH---HHHhcCEEE--------EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHH
Confidence 11 122222111 11112232 2233344444 4689999999886542 222 245
Q ss_pred HHHHHHHHHhcCCcEEEEEecC---HH-------------HHHhhcCEEEEEe
Q 040300 506 AAKVIKRFILHAKKTAFVVEHD---FI-------------MATYLADRVIVYE 542 (605)
Q Consensus 506 l~~~l~~l~~~~g~tiivvsHD---~~-------------~~~~~adrviv~~ 542 (605)
++..|++++++.+.+||++.|- .. .+...+|.++.++
T Consensus 237 ~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~ 289 (322)
T 2i1q_A 237 HMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVR 289 (322)
T ss_dssp HHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEE
Confidence 5566667777789999998872 11 2455677777665
No 436
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.09 E-value=0.00045 Score=80.29 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.3
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
.++.+.|+||||+|||||+++|+|.+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 3467999999999999999999998743
No 437
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.07 E-value=0.0027 Score=66.60 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
.+|+++.|.|++|+|||||+..++..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999888754
No 438
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.05 E-value=0.00027 Score=67.35 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.6
Q ss_pred cEEEEECCCCChHHHHHHHHhcCCC
Q 040300 104 QVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 104 e~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
..+.|.|++|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999987653
No 439
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.04 E-value=0.00015 Score=76.11 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
++.+++|+|++|||||||++.|+|.+.|..|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 588999999999999999999999888877765
No 440
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.03 E-value=0.0036 Score=72.24 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
++-.-+.|.||.|+|||||+|.+++.+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999999875
No 441
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.02 E-value=0.0076 Score=63.71 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=41.2
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhcCCcEEEEEecCHhHHH
Q 040300 233 QNAEIYMFDEPSSYLD---VKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLD 280 (605)
Q Consensus 233 ~~p~vlllDEPts~LD---~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l~ 280 (605)
..|.++++||--..++ +.....+.+++++.++.|..++++||+++.+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 3588999999999995 66777788899998888999999999998664
No 442
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=97.01 E-value=0.00017 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.692 Sum_probs=22.8
Q ss_pred ceeeccccccccccccccCCcceEEEe
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
+..|+++.|+|||.|++.|| ++|.+.
T Consensus 3 ~~~id~~~C~~Cg~C~~~CP-~~~~~~ 28 (64)
T 1dax_A 3 KFYVDQDECIACESCVEIAP-GAFAMD 28 (64)
T ss_dssp CCEECSTTCCSCCHHHHHCT-TTEEEC
T ss_pred EEEEccccCCCchHHHHhCC-ccEeEc
Confidence 45788889999999999999 998764
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.00 E-value=0.00039 Score=67.00 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=23.3
Q ss_pred eEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHH
Q 040300 361 NFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLA 395 (605)
Q Consensus 361 ~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~ 395 (605)
+..+++.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~------~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG------INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE------EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC------eEEEEcCCCCCHHHHHHHHH
Confidence 445555555 79999999999999999875
No 444
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.98 E-value=0.00036 Score=65.27 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=25.3
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+|++++|+|++||||||++++|++.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5689999999999999999999997754
No 445
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.98 E-value=0.0003 Score=74.48 Aligned_cols=128 Identities=10% Similarity=0.112 Sum_probs=73.2
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccC----cceeEeecCcCCCCCc-CcHHHH
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIP----EFNVSYKPQKISPKFQ-STVRHL 433 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~----~~~i~y~~q~~~~~~~-~tv~~~ 433 (605)
++++++.+..| ++++|+||||||||||+++|+|.. .|.+.....+ ...+++++|.....++ .+....
T Consensus 159 l~~~~~~i~~~-----~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 159 LKCMVYNIPKK-----RYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHCCTTC-----CEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHhcccccCCC-----CEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 45566666666 689999999999999999999864 4554321111 1135666665311000 000000
Q ss_pred HHhhhccCCCCH----HHHHHHHh---------------hcCC-chhhccCcCcCChhHHHHHHHHHHHccCCCEEE-Ee
Q 040300 434 LHQKIRDSYTHP----QFVSDVMK---------------PLLI-EQLMDQEVVNLSGGELQRVALCLCLGKPADIYL-ID 492 (605)
Q Consensus 434 ~~~~~~~~~~~~----~~~~~~l~---------------~l~l-~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lll-LD 492 (605)
+...... ... ....+.+. ..-+ ...++.....+++|++||++.+.++...|++++ ||
T Consensus 231 ~~r~l~~--~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd 308 (377)
T 1svm_A 231 ESRDLPS--GQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLE 308 (377)
T ss_dssp TTTTCCC--CSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred HHhhccc--cCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEe
Confidence 0000000 000 11112221 1111 123466778899999999999888899999988 99
Q ss_pred cCCC
Q 040300 493 EPSA 496 (605)
Q Consensus 493 EPt~ 496 (605)
+|+.
T Consensus 309 ~~~~ 312 (377)
T 1svm_A 309 RSEF 312 (377)
T ss_dssp TCTH
T ss_pred CCHH
Confidence 9997
No 446
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.97 E-value=0.00033 Score=66.80 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEecCCCCHHHHHHHHHc
Q 040300 376 IIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~G 396 (605)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 447
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.97 E-value=0.00085 Score=63.83 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+.|.||+|+|||||++.|+....
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997653
No 448
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.97 E-value=0.00035 Score=74.03 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=40.0
Q ss_pred hhcccCCCCChHHHHHHHHHHHHccCCCEEE-EeCCCCCCCHHHHHHHHHHHHHhhcCCcEE
Q 040300 209 VIDRNVGDLSGGELQRFAIAVVAVQNAEIYM-FDEPSSYLDVKQRLKAAQVVRSLLRPNSYV 269 (605)
Q Consensus 209 ~~dr~v~~LSGGe~QRvaIA~aL~~~p~vll-lDEPts~LD~~~r~~~~~~i~~l~~~g~tv 269 (605)
.+++....+++|++||++.+.+++..|++++ ||+|+. .+++++.+.|.++
T Consensus 275 ~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~-----------~l~~RL~~Rg~t~ 325 (377)
T 1svm_A 275 IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF-----------LLEKRIIQSGIAL 325 (377)
T ss_dssp EEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH-----------HHHTTCTTCHHHH
T ss_pred ccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH-----------HHHHHHHHcCccH
Confidence 4677888999999999999888899999988 999997 2456666655543
No 449
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.96 E-value=0.0015 Score=62.51 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCHhHH
Q 040300 233 QNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVL 279 (605)
Q Consensus 233 ~~p~vlllDEPts~LD~~~r~~~~~~i~~l~~~g~tvivvsHdl~~l 279 (605)
.++.++++||.-. ||......+.+.+.+. ..+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 4678999999755 7887777666666543 2367788888876543
No 450
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.95 E-value=0.0012 Score=71.44 Aligned_cols=125 Identities=7% Similarity=0.099 Sum_probs=72.5
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|+.|+|||||+--++...-- ...++.|+.-+ ++..++......
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~----------~g~~vl~fSlE------ms~~ql~~R~~~--------- 246 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----------NDDVVNLHSLE------MGKKENIKRLIV--------- 246 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH----------TTCEEEEECSS------SCTTHHHHHHHH---------
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH----------cCCEEEEEECC------CCHHHHHHHHHH---------
Confidence 34788899999999999999998777643210 12246665433 232232211000
Q ss_pred HHHHhhcCCchhhccCcCcCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEec
Q 040300 449 SDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKT--AFVVEH 526 (605)
Q Consensus 449 ~~~l~~l~l~~~~~~~~~~LSGGe~QRvaiA~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t--iivvsH 526 (605)
....+.+..+... -..|+..+.+|+.-|...+.+.++++.|+|. +++. .+...++++.++.+.. +|||.+
T Consensus 247 --~~~~i~~~~l~~g-~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 247 --TAGSINAQKIKAA-RRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp --HHSCCCHHHHHHT-GGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred --HHcCCCHHHHhcc-cCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEEec
Confidence 0000111112110 0238888888888877777777888888874 5554 4455566665555667 888754
No 451
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.94 E-value=0.0005 Score=66.57 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.+..+.|.||+|+|||||++.++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
No 452
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.93 E-value=0.0002 Score=75.11 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=27.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
+.+++|+|++|||||||++.|+|.+.++.|++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 35899999999999999999999877665543
No 453
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=96.93 E-value=0.00027 Score=81.98 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=58.7
Q ss_pred EEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccc----cccccccccccCCcceEEEecCCcc---cCCC
Q 040300 10 IVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEE----LCIGCGICVKKCPFEAIQIINLPKD---LDKD 82 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~----~c~~~g~~~~~cp~~ai~i~nl~~~---~~~~ 82 (605)
++|.+||- .| ..|.++||-+- |...|.+........|... .|++||.|+..||.+||+....... .+-.
T Consensus 175 ~~d~~~CI--~C-~~Cv~~C~~~~-~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~~~~~r~w~~~ 250 (783)
T 3i9v_3 175 ILDRERCI--HC-KRCVRYFEEVP-GDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTARFRARNWEME 250 (783)
T ss_dssp EECTTTCC--CC-CHHHHHHHHTT-CCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGGGTTSCCTTTSE
T ss_pred EEchhhCC--Cc-cHHHHHhhhhc-CCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceeccccccccccccce
Confidence 56999996 68 78999997642 2335555444334444432 6999999999999999998765321 1111
Q ss_pred ceEEeCC-----CceeeecCCCCCCCcEEEEECC
Q 040300 83 TTHRYGP-----NTFKLHRLPVPRPGQVLGLVGT 111 (605)
Q Consensus 83 ~~~~yg~-----~~f~l~~l~~~~~Ge~~gLvG~ 111 (605)
.+...-. .++.++ .+.|+++-+.|.
T Consensus 251 ~~~s~C~~C~~gC~i~v~----v~~g~v~rv~~~ 280 (783)
T 3i9v_3 251 ETPTTCALCPVGCGITAD----TRSGELLRIRAR 280 (783)
T ss_dssp EEEEECCSSSSCCEEEEE----EETBEEEEEEEC
T ss_pred EEEEeCCCCCCcccceee----eECCEEEeccCC
Confidence 1222111 123332 367999999985
No 454
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.91 E-value=0.00045 Score=71.10 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=30.5
Q ss_pred cCCCEEEEecCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q 040300 484 KPADIYLIDEPSAY-LDSEQRIVAAKVIKRFILHAKKTAFVVEH 526 (605)
Q Consensus 484 ~~p~lllLDEPt~~-LD~~~~~~l~~~l~~l~~~~g~tiivvsH 526 (605)
.++++|++||+-.- .+...+..+..++..+.. .+..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 46899999998663 344677888888888754 4666666665
No 455
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.90 E-value=0.00063 Score=69.13 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCce
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 133 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~ 133 (605)
++...+.|.||+|+||||+++.|++.+.+..+.
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 345689999999999999999999987665443
No 456
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.90 E-value=0.00052 Score=62.83 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred CcEEEEECCCCChHHHHHHHHhc
Q 040300 103 GQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 103 Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
..+.+|+|||||||||++.+|.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34999999999999999999873
No 457
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.90 E-value=0.0023 Score=65.28 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
..+.|.||+|+|||||+++|++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 468999999999999999999865
No 458
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=96.89 E-value=0.00036 Score=72.98 Aligned_cols=59 Identities=31% Similarity=0.645 Sum_probs=47.0
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc---------cccccCCcceEEEecCCc
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG---------ICVKKCPFEAIQIINLPK 77 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g---------~~~~~cp~~ai~i~nl~~ 77 (605)
.+.++|.++|. .| ..|...||. .+|.+.+.. +..+.|++|+ .||+.||.+||.+.++..
T Consensus 175 g~v~id~~kCi--gC-g~Cv~aCP~-----~Ai~~~~~~----~~~~kC~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~d 242 (352)
T 2ivf_B 175 GIVLVDQERCK--GH-RHCVEACPY-----KAIYFNPVS----QTSEKCILCYPRIEKGIANACNRQCPGRVRAFGYLDD 242 (352)
T ss_dssp CCEEECTTTCC--CC-CHHHHHCTT-----CCEEEETTT----TEEEECCTTHHHHTTTBCCHHHHTCTTCCEEEEETTC
T ss_pred CeEEechhhcC--Cc-hHHHhhcCc-----cceeccccc----ccccccCCCcchhhcCCCChHHHhcCccceeccccch
Confidence 45788999995 58 579999997 367776542 3456899996 999999999999988754
No 459
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=96.89 E-value=0.00023 Score=57.36 Aligned_cols=28 Identities=29% Similarity=0.833 Sum_probs=24.7
Q ss_pred ceeeccccccccccccccCCcceEEEec
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
+++++.+.|+|||.|++.||++||++.+
T Consensus 2 ~~~~~~~~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 2 HTVKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp CEEEEETTCCCCCHHHHHCTTCCCEEEE
T ss_pred CCcccCCcCcChhHHHHHCCcccccccc
Confidence 4678888999999999999999998764
No 460
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.87 E-value=0.0003 Score=69.12 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHH
Q 040300 468 LSGGELQRVALCLCLGKPADIYLIDEPSA-YLDSEQRIVAAKVIKR 512 (605)
Q Consensus 468 LSGGe~QRvaiA~aL~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~ 512 (605)
.+.|...+... ....+-+++++||.-. ++|.......++.+..
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 45677766643 3578899999999976 5887666444444433
No 461
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.87 E-value=0.00039 Score=66.31 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q 040300 105 VLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G 125 (605)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 462
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=96.86 E-value=0.00026 Score=69.02 Aligned_cols=60 Identities=18% Similarity=0.399 Sum_probs=46.3
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeecccccccc------c---cccccCCcceEEEecCC
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGC------G---ICVKKCPFEAIQIINLP 76 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~------g---~~~~~cp~~ai~i~nl~ 76 (605)
.+.++|.++|....| ..|...||.. .|.+++... ..+.|++| | .||+.||.+||++.++.
T Consensus 99 g~v~id~~~C~~~~C-~~C~~~CP~~-----Ai~~~~~~~----~~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~ 167 (214)
T 1h0h_B 99 GCVLFTPKTKDLEDY-ESVISACPYD-----VPRKVAESN----QMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLS 167 (214)
T ss_dssp CCEEECGGGGGCSCH-HHHHHHCTTC-----CCEECTTSS----CEECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHH
T ss_pred CeEEEeHHHCccccc-cHHHHhcCCC-----CeEecCCCc----ccCcCCCCcchhhcCCChhHHHhcCcccEEEccHH
Confidence 457899999964358 5799999974 455654322 45689999 6 99999999999998754
No 463
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=96.84 E-value=0.00041 Score=74.33 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=35.8
Q ss_pred chhhcccCccccCceEEEEcCCCCceeeccccccccccccccCCcceE
Q 040300 23 QECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAI 70 (605)
Q Consensus 23 ~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g~~~~~cp~~ai 70 (605)
.+|+..||.. ||..+ +++..|+++.|+.||-|+++||+.|.
T Consensus 278 ~~vv~~CPt~-----ai~~~--~~~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 278 AEVVGLCPTG-----CMTYE--SGTLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp HHTTTTCTTC-----CEEEE--TTEEEECGGGCCCCSHHHHHCTTTEE
T ss_pred hhhhccCcHH-----heeec--CCEEEEccccCCchhhhHhhCcHhhc
Confidence 6899999964 88886 47899999999999999999999554
No 464
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.83 E-value=0.00071 Score=65.45 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=28.6
Q ss_pred cCCCEEEEecCCCCC-CHHHHHHHHHHHHHHHhcCCcE-EEEEec
Q 040300 484 KPADIYLIDEPSAYL-DSEQRIVAAKVIKRFILHAKKT-AFVVEH 526 (605)
Q Consensus 484 ~~p~lllLDEPt~~L-D~~~~~~l~~~l~~l~~~~g~t-iivvsH 526 (605)
.++.++++||.-.-- +...+..+..++..+... +.. +|++++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~ 146 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSAS 146 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEES
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 468999999965432 233367788888887544 444 777776
No 465
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=96.82 E-value=0.0003 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.776 Sum_probs=22.0
Q ss_pred ceeeccccccccccccccCCcceEEE
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
+..|+++.|+|||.|++.|| +++.+
T Consensus 3 ~v~vd~~~CigCg~C~~~CP-~~~~~ 27 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAP-DIYDY 27 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCT-TTEEE
T ss_pred EEEEecccCcccChhhHhCc-hheee
Confidence 46788899999999999999 88765
No 466
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.0022 Score=64.36 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
.++.-+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456779999999999999999998865
No 467
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.79 E-value=0.00065 Score=63.02 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
++|..++|+|++|+|||||++.|+|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3688999999999999999999999753
No 468
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.75 E-value=0.0078 Score=61.47 Aligned_cols=33 Identities=33% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+|++++++|+||+||||++..|++.+.+..+++
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 399999999999999999999999987765554
No 469
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.74 E-value=0.01 Score=62.37 Aligned_cols=137 Identities=14% Similarity=0.196 Sum_probs=77.3
Q ss_pred ceeecCeEEEEEecCCCCHHHHHHHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFV 448 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 448 (605)
|-+.+|+++.|.|+.|+|||||+..++-..... ...+.|+.-+... . +...
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~----------g~~vlyi~~E~s~--~----~~~a------------- 119 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----------GGTCAFIDAEHAL--D----PVYA------------- 119 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----------TCCEEEEESSCCC--C----HHHH-------------
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC----------CCeEEEEECCCCh--h----HHHH-------------
Confidence 467888999999999999999997776432111 1235565533211 1 1111
Q ss_pred HHHHhhcCC--chhhccCcCcCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCC---H----------HHHHHHHHHHH
Q 040300 449 SDVMKPLLI--EQLMDQEVVNLSGGELQRVALCLCLG--KPADIYLIDEPSAYLD---S----------EQRIVAAKVIK 511 (605)
Q Consensus 449 ~~~l~~l~l--~~~~~~~~~~LSGGe~QRvaiA~aL~--~~p~lllLDEPt~~LD---~----------~~~~~l~~~l~ 511 (605)
+.+++ +.+.-..+. + ++ |-+.+++.+. .+++++++|..++-.- . .+.+.+.+.++
T Consensus 120 ----~~~g~d~~~l~i~~~~--~-~e-~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr 191 (366)
T 1xp8_A 120 ----RALGVNTDELLVSQPD--N-GE-QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 191 (366)
T ss_dssp ----HHTTCCGGGCEEECCS--S-HH-HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred ----HHcCCCHHHceeecCC--c-HH-HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHH
Confidence 11111 111111111 2 23 3345566664 4689999999997651 1 12234555555
Q ss_pred HH---HhcCCcEEEEEecCHHH----------------HHhhcCEEEEEe
Q 040300 512 RF---ILHAKKTAFVVEHDFIM----------------ATYLADRVIVYE 542 (605)
Q Consensus 512 ~l---~~~~g~tiivvsHD~~~----------------~~~~adrviv~~ 542 (605)
+| +++.+.+||+++|-... +..+||-++.+.
T Consensus 192 ~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~ 241 (366)
T 1xp8_A 192 KLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVR 241 (366)
T ss_dssp HHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEE
Confidence 54 56789999999885321 355678777775
No 470
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.74 E-value=0.0019 Score=65.54 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.5
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
.+.|.||+|+||||++++|++.+.+..+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 5899999999999999999998766544
No 471
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=96.72 E-value=0.00046 Score=70.61 Aligned_cols=57 Identities=28% Similarity=0.516 Sum_probs=44.3
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc---------cccccCCcceEEEecCC
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG---------ICVKKCPFEAIQIINLP 76 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g---------~~~~~cp~~ai~i~nl~ 76 (605)
+.++|.++|. .| ..|...||.+ .|.+++..++ ...|++|| .||+.||++||.+.+..
T Consensus 125 ~v~id~~~Ci--gC-g~C~~~CP~~-----ai~~~~~~~~----~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~~ 190 (294)
T 1kqf_B 125 IVDFQSENCI--GC-GYCIAGCPFN-----IPRLNKEDNR----VYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKK 190 (294)
T ss_dssp CEEECGGGCC--CC-CHHHHHCTTC-----CCEEETTTTE----EECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEHH
T ss_pred ceEeCcccCC--Cc-chhhhcCCCC-----CcEecCCCCC----eeeCCCccchhhcCccHHHHHhCCcCcEEEecHH
Confidence 4678999995 68 5799999974 4556554333 24799998 99999999999998754
No 472
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=96.70 E-value=0.0007 Score=64.99 Aligned_cols=56 Identities=27% Similarity=0.637 Sum_probs=45.0
Q ss_pred EEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc---------cccccCCcceEEEecCC
Q 040300 8 IAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG---------ICVKKCPFEAIQIINLP 76 (605)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g---------~~~~~cp~~ai~i~nl~ 76 (605)
+.++|.++|. .| ..|...||.. +|.+++..+ .+.|++|| .||..||.+||++.++.
T Consensus 82 ~~~id~~~Ci--gC-~~C~~~CP~~-----Ai~~~~~~~-----~~kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~~~ 146 (195)
T 2vpz_B 82 LVLVDPKKCI--AC-GACIAACPYD-----ARYLHPAGY-----VSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLE 146 (195)
T ss_dssp CEEECTTTCC--CC-CHHHHHCTTC-----CCEECTTSS-----EECCCTTHHHHHTTCCCHHHHSCTTCCEEEEETT
T ss_pred ceeecCCCCC--Cc-ChhHhhCCCC-----CeEECCCCC-----CccCcCcchHHhCCCCchhHhhCCcccEEEeccc
Confidence 5678999996 58 5799999963 566766433 56899999 79999999999997665
No 473
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=96.68 E-value=0.00049 Score=55.54 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=24.0
Q ss_pred eeeccccccc--cccccccCCcceEEEec
Q 040300 48 AFISEELCIG--CGICVKKCPFEAIQIIN 74 (605)
Q Consensus 48 ~~i~~~~c~~--~g~~~~~cp~~ai~i~n 74 (605)
|+|+.+.|+| ||.|++.||++||.+.+
T Consensus 1 p~i~~~~C~~c~C~~C~~~CP~~ai~~~~ 29 (78)
T 1h98_A 1 PHVICEPCIGVKDQSCVEVCPVECIYDGG 29 (78)
T ss_dssp CEEECGGGTTTCCCHHHHHCTTCCEEECS
T ss_pred CEEEchhCCCCCcChhhhhcCccceEcCC
Confidence 5788899999 99999999999998753
No 474
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.68 E-value=0.0047 Score=63.55 Aligned_cols=125 Identities=10% Similarity=0.227 Sum_probs=71.6
Q ss_pred ceeecCeEEEEEecCCCCHHHHH-HHHHcCCCCCeeeeeccccCcceeEeecCcCCCCCcCcHHHHHHhhhccCCCCHHH
Q 040300 369 GEFTDSQIIVMLGENGTGKTTFI-RMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQF 447 (605)
Q Consensus 369 G~~~~geii~i~G~NGsGKSTLl-k~L~Gl~~p~~G~i~~~~~~~~~i~y~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~ 447 (605)
|-+.+| ++-|.||.|+|||||+ .+++...+.. ....+.|+.-+.... ..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g---------~g~~vlyId~E~s~~---~~----------------- 73 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY---------PDAVCLFYDSEFGIT---PA----------------- 73 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC---------TTCEEEEEESSCCCC---HH-----------------
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC---------CCceEEEEeccchhh---HH-----------------
Confidence 557778 8999999999999995 4444433210 012355654322111 01
Q ss_pred HHHHHhhcCCc--hhhccCcCcCChhHHHHHHHHHHH--c--cCCCEEEEecCCCCCC---------------HHHHHHH
Q 040300 448 VSDVMKPLLIE--QLMDQEVVNLSGGELQRVALCLCL--G--KPADIYLIDEPSAYLD---------------SEQRIVA 506 (605)
Q Consensus 448 ~~~~l~~l~l~--~~~~~~~~~LSGGe~QRvaiA~aL--~--~~p~lllLDEPt~~LD---------------~~~~~~l 506 (605)
.++.+|+. +++-..+ .-+|++.+.++..| + .+|+++++|--++-.- +.+.+.+
T Consensus 74 ---ra~~lGvd~d~llv~~~---~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~ 147 (333)
T 3io5_A 74 ---YLRSMGVDPERVIHTPV---QSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTM 147 (333)
T ss_dssp ---HHHHTTCCGGGEEEEEC---SBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHH
T ss_pred ---HHHHhCCCHHHeEEEcC---CCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHH
Confidence 12223332 2211112 23566667777776 3 3699999998877641 0233445
Q ss_pred HHHHHH---HHhcCCcEEEEEecCHH
Q 040300 507 AKVIKR---FILHAKKTAFVVEHDFI 529 (605)
Q Consensus 507 ~~~l~~---l~~~~g~tiivvsHD~~ 529 (605)
.+.|++ ++++.+.++|+|-|=..
T Consensus 148 s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 148 KSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhCCEEEEECCeee
Confidence 555554 46778999999999755
No 475
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=96.68 E-value=0.00047 Score=58.60 Aligned_cols=29 Identities=31% Similarity=0.708 Sum_probs=25.7
Q ss_pred CceeeccccccccccccccCCcceEEEec
Q 040300 46 KIAFISEELCIGCGICVKKCPFEAIQIIN 74 (605)
Q Consensus 46 ~~~~i~~~~c~~~g~~~~~cp~~ai~i~n 74 (605)
.+..|+++.|+|||.|++.||++||.+.+
T Consensus 36 ~~~~id~~~C~~Cg~C~~~CP~~ai~~~~ 64 (103)
T 1xer_A 36 TIVGVDFDLCIADGSCINACPVNVFQWYD 64 (103)
T ss_dssp SSEEEETTTCCCCCHHHHHCTTCCCEEEE
T ss_pred ceEEEehhhCCChhhHHHHcCccCeeccc
Confidence 45788999999999999999999998764
No 476
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=96.67 E-value=0.00063 Score=50.82 Aligned_cols=24 Identities=46% Similarity=0.988 Sum_probs=20.8
Q ss_pred eeccccccccccccccCCcceEEEe
Q 040300 49 FISEELCIGCGICVKKCPFEAIQII 73 (605)
Q Consensus 49 ~i~~~~c~~~g~~~~~cp~~ai~i~ 73 (605)
+| ++.|++||.|++.||++||++.
T Consensus 3 ~i-~~~C~~C~~C~~~CP~~ai~~~ 26 (55)
T 2fdn_A 3 VI-NEACISCGACEPECPVNAISSG 26 (55)
T ss_dssp EE-CTTCCCCCTTGGGCTTCCEECC
T ss_pred Ee-cccCcChhhHHHHCCccccCcC
Confidence 35 6789999999999999999754
No 477
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.67 E-value=0.00027 Score=68.12 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLG 132 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G 132 (605)
.+|.++.|+|++||||||+++.|++.+.|..|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 57999999999999999999999998865555
No 478
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=96.67 E-value=0.00066 Score=54.54 Aligned_cols=26 Identities=38% Similarity=0.800 Sum_probs=23.1
Q ss_pred eeeccccccc--cccccccCCcceEEEe
Q 040300 48 AFISEELCIG--CGICVKKCPFEAIQII 73 (605)
Q Consensus 48 ~~i~~~~c~~--~g~~~~~cp~~ai~i~ 73 (605)
|+|+++.|+| ||.|++.||++||.+.
T Consensus 1 a~i~~~~C~~c~C~~C~~~Cp~~ai~~~ 28 (77)
T 1bc6_A 1 AYVITEPCIGTKDASCVEVCPVDCIHEG 28 (77)
T ss_dssp CEECCSTTTTCCCCSSTTTCTTCCEEEC
T ss_pred CEEeCccCCCCCcchhHHhcccccEEeC
Confidence 4678889999 9999999999999874
No 479
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.00049 Score=64.77 Aligned_cols=33 Identities=36% Similarity=0.354 Sum_probs=28.3
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCCCCCce
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 133 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~ 133 (605)
.+|.++.|+|.+||||||+++.|+..+.+..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~ 43 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYR 43 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 579999999999999999999999987654333
No 480
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.0017 Score=65.18 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
-+.|.||.|+|||||++.|+..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999999998765
No 481
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.66 E-value=0.0012 Score=61.27 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.5
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
+|..++|+|++|+|||||++.|+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 457899999999999999999998653
No 482
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.66 E-value=0.00031 Score=67.79 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=26.4
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 468999999999999999999998876555
No 483
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=96.65 E-value=0.0008 Score=50.58 Aligned_cols=24 Identities=46% Similarity=1.056 Sum_probs=20.9
Q ss_pred eeeccccccccccccccCCcceEEE
Q 040300 48 AFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 48 ~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
..|+++.|+|||.|++.|| .+|.+
T Consensus 2 i~i~~~~C~~C~~C~~~Cp-~~~~~ 25 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCP-EVFAM 25 (59)
T ss_dssp EEESSCCCSSCCGGGGTST-TTEEE
T ss_pred eEEChhhCcChhHHHHHCC-HHhee
Confidence 5678889999999999999 58775
No 484
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.00045 Score=64.97 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=26.2
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHcCCCCCee
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAGLLKPDSV 403 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~Gl~~p~~G 403 (605)
+|.+++|+|++||||||+++.|+..+.+..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~ 42 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGY 42 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999988765433
No 485
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.65 E-value=0.0008 Score=64.44 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=25.6
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhcCCC
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.+|.+++|+|++||||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5799999999999999999999998763
No 486
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.64 E-value=0.00079 Score=64.48 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.6
Q ss_pred ecCeEEEEEecCCCCHHHHHHHHHcCCC
Q 040300 372 TDSQIIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 372 ~~geii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.+|.+++|+||+|||||||.+.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567899999999999999999998764
No 487
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.64 E-value=0.00045 Score=72.09 Aligned_cols=35 Identities=31% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
..+|.+++|+|+||+|||||++.|+|.+.+..|++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999999999999999887766554
No 488
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=96.63 E-value=0.00077 Score=73.60 Aligned_cols=56 Identities=23% Similarity=0.470 Sum_probs=45.0
Q ss_pred EEEEEeCCCCCcccccchhhcccCccccCceEEEEcCCCCceeeccccccccc---------cccccCCcceEEEec
Q 040300 7 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCG---------ICVKKCPFEAIQIIN 74 (605)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~c~~~g---------~~~~~cp~~ai~i~n 74 (605)
.++++|.++|. .| ..|...||. .+|.+....+ ..+.|++|| .||..||..||.+..
T Consensus 208 g~v~id~~kCi--gC-g~Cv~~CP~-----~AI~~~~~~~----~~~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~g~ 272 (512)
T 1q16_B 208 GIVLIDQDKCR--GW-RMCITGCPY-----KKIYFNWKSG----KSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 272 (512)
T ss_dssp CCEEECTTTCC--CC-CCHHHHCTT-----CCEEEETTTT----EEEECCTTHHHHTTTCCCHHHHTCTTCCEEEEE
T ss_pred CeEEECHHHCC--Cc-hHHHhhCCc-----cceecccCCC----CcccCcCCCchhhcCCCCceEeeCchhhhhccc
Confidence 35789999996 58 579999997 3677766543 356899999 999999999998764
No 489
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.62 E-value=0.0007 Score=66.53 Aligned_cols=40 Identities=30% Similarity=0.280 Sum_probs=27.5
Q ss_pred eeeEEEEEeeceeecCeEEEEEecCCCCHHHHHHHHHcCCCC
Q 040300 359 QGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKP 400 (605)
Q Consensus 359 l~~~~l~v~~G~~~~geii~i~G~NGsGKSTLlk~L~Gl~~p 400 (605)
+.+.+|.+. .+.+|.+++|.|++||||||+++.|+..+.+
T Consensus 13 ~~~~~~~~~--~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQ--SNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CC--CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEe--ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445555544 1235678999999999999999999998876
No 490
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.61 E-value=0.0085 Score=64.27 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=28.4
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVED 405 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~i 405 (605)
+++++++|+||+||||++..|++.+.+..+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V 129 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 47899999999999999999999998876654
No 491
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.61 E-value=0.0005 Score=71.74 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=27.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHcCCCCCeee
Q 040300 374 SQIIVMLGENGTGKTTFIRMLAGLLKPDSVE 404 (605)
Q Consensus 374 geii~i~G~NGsGKSTLlk~L~Gl~~p~~G~ 404 (605)
|.+++|+|+||+|||||++.|+|.+.+..+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~ 86 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLK 86 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 4789999999999999999999998776554
No 492
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=70.20 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.3
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcC
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~ 126 (605)
+..|..+||+|.||+|||||++.|+|.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 357889999999999999999999998
No 493
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=96.57 E-value=0.0006 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.826 Sum_probs=21.5
Q ss_pred ceeeccccccccccccccCCcceEEE
Q 040300 47 IAFISEELCIGCGICVKKCPFEAIQI 72 (605)
Q Consensus 47 ~~~i~~~~c~~~g~~~~~cp~~ai~i 72 (605)
+..|+++.|+|||.|++.|| ++|.+
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp-~~~~~ 27 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCP-DVFEM 27 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCT-TTEEE
T ss_pred EEEECcccCcCchHHHHhCC-ceEEE
Confidence 35788889999999999999 48875
No 494
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.48 E-value=0.0013 Score=61.44 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.7
Q ss_pred cCeEEEEEecCCCCHHHHHHHHHc
Q 040300 373 DSQIIVMLGENGTGKTTFIRMLAG 396 (605)
Q Consensus 373 ~geii~i~G~NGsGKSTLlk~L~G 396 (605)
.|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999984
No 495
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.48 E-value=0.0011 Score=63.12 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCChHHHHHHHHhcCC
Q 040300 102 PGQVLGLVGTNGIGKSTALKILAGKL 127 (605)
Q Consensus 102 ~Ge~~gLvG~NGsGKSTLlkiL~G~l 127 (605)
...+++|+|++||||||+.+.|++.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999865
No 496
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.46 E-value=0.0011 Score=63.28 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHcCC
Q 040300 375 QIIVMLGENGTGKTTFIRMLAGLL 398 (605)
Q Consensus 375 eii~i~G~NGsGKSTLlk~L~Gl~ 398 (605)
.+++|+|++||||||+.+.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998765
No 497
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.45 E-value=0.0012 Score=64.82 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCCCcEEEEECCCCChHHHHHHHHhcCCCCCCcee
Q 040300 100 PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF 134 (605)
Q Consensus 100 ~~~Ge~~gLvG~NGsGKSTLlkiL~G~l~p~~G~i 134 (605)
+.+|.++.|.|++||||||+++.|+..+.+ .+.+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 458999999999999999999999999876 4443
No 498
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.0029 Score=65.06 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=23.0
Q ss_pred CCCcEEEEECCCCChHHHHHHHHhc
Q 040300 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (605)
Q Consensus 101 ~~Ge~~gLvG~NGsGKSTLlkiL~G 125 (605)
.+|+++.|.|++|+|||||+.-++.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999988875
No 499
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.45 E-value=0.0018 Score=59.25 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEecCCCCHHHHHHHHHcCCC
Q 040300 376 IIVMLGENGTGKTTFIRMLAGLLK 399 (605)
Q Consensus 376 ii~i~G~NGsGKSTLlk~L~Gl~~ 399 (605)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
No 500
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.45 E-value=0.0019 Score=59.16 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCCC
Q 040300 105 VLGLVGTNGIGKSTALKILAGKLK 128 (605)
Q Consensus 105 ~~gLvG~NGsGKSTLlkiL~G~l~ 128 (605)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999753
Done!