BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040301
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 126/294 (42%), Gaps = 28/294 (9%)
Query: 70 SALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTL 129
S L+NC +L +SL +N L G +P IG + N GNIP E+G+ R L
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 130 LSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHI 189
L L N NGTI M KQ G I + K I+ G K H
Sbjct: 540 LDLNTNLFNGTIPAAM--FKQ-----------SGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 190 PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRV 249
L +R L N+L++ P ++ S Y +
Sbjct: 587 AGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGHTSPTFDNNGS-----------MMF 633
Query: 250 LDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
LD+S N LSG I IG++ L L+L N G IP+ VG L L LDLS N L G+I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 309 PKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPP 362
P+++ L+ L + + S+N L G I G F+ F F N LCG P R P
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 747
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 132/308 (42%), Gaps = 61/308 (19%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSL 83
V+DLS N FSG +P + NL L L L
Sbjct: 344 VLDLSFNEFSGELPESLTNLS-------------------------------ASLLTLDL 372
Query: 84 GSNPLGG-ILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS 142
SN G ILP + N + Q Y N G IP + N L L L N L+GTI
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLREL 202
++G L +LR L L N LEG IP +L ++K + + L N L+G IP L++ T+L +
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 203 HLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDI- 261
L +N+LT IP + LE L +L LS N SG+I
Sbjct: 493 SLSNNRLTGEIPKWIGRLEN------------------------LAILKLSNNSFSGNIP 528
Query: 262 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
+ +G L L L +N F G IP ++ +S ++ N ++GK ++ K+
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 322 NASHNRLE 329
+ + N LE
Sbjct: 585 HGAGNLLE 592
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 134/326 (41%), Gaps = 61/326 (18%)
Query: 12 GDSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSA 71
G P +P + + L+ N F+G IP+ FLS
Sbjct: 258 GPIPPLPLKSLQYLSLAENKFTGEIPD-----------------------------FLSG 288
Query: 72 LTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQE-IGNLRGLTLL 130
C L L L N G +PP G+ S + N G +P + + +RGL +L
Sbjct: 289 A--CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVL 345
Query: 131 SLFNNDLNGTISPTMGRL-KQLRGLSLKYNNLEGSIPYDLCH--LKLMYGIRLTGNKLSG 187
L N+ +G + ++ L L L L NN G I +LC + + L N +G
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVL 247
IPP L++ + L LHL N L+ +IPSSL SL L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK------------------------L 441
Query: 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
R L L N L G+I + + LETL L N G IP + + +L + LS N L+G
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 307 KIPKSLETLSHLKQFNASHNRLEGKI 332
+IPK + L +L S+N G I
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNI 527
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 140/340 (41%), Gaps = 70/340 (20%)
Query: 25 MDLSSNSFSGHIP--NTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALS 82
+D+SSN+FS IP L+H F A++ C LK L+
Sbjct: 202 LDVSSNNFSTGIPFLGDCSALQHLDISGNKL-----------SGDFSRAISTCTELKLLN 250
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTI 141
+ SN G +PP+ S Q K G IP + G LT L L N G +
Sbjct: 251 ISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 142 SPTMG-------------------------RLKQLRGLSLKYNNLEGSIPYDLCHLKL-M 175
P G +++ L+ L L +N G +P L +L +
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 176 YGIRLTGNKLSGHIPP--CLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXX 233
+ L+ N SG I P C +L+EL+L +N T IP +L
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL---------------- 411
Query: 234 XXXXXXXXQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLI 292
L L LS N LSG I S++G+L L L L N +G IP+ + +
Sbjct: 412 --------SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
+LE+L L N+L+G+IP L ++L + S+NRL G+I
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 143/345 (41%), Gaps = 77/345 (22%)
Query: 24 VMDLSSNSFSGH------IPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRH 77
V+DLS+NS SG + + G L+H ++ S ++ C +
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKH-------------LAISGNKISGDVDVSRCVN 198
Query: 78 LKALSLGSNPLG-GILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNND 136
L+ L + SN GI P +G+ SA Q+ KL G+ + I L LL++ +N
Sbjct: 199 LEFLDVSSNNFSTGI--PFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 137 LNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC-HLKLMYGIRLTGNKLSGHIPPCLAS 195
G I P LK L+ LSL N G IP L + G+ L+GN G +PP S
Sbjct: 256 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 196 LTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRN 255
+ L L L SN + +P ++ L+VLDLS N
Sbjct: 314 CSLLESLALSSNNFSGELP-----------------------MDTLLKMRGLKVLDLSFN 350
Query: 256 QLSGDI--STIGALVDLETLSLASNQFQGP--------------------------IPES 287
+ SG++ S L TL L+SN F GP IP +
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
+ + L SL LS N LSG IP SL +LS L+ N LEG+I
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 29/116 (25%)
Query: 244 LKVLRVLDLSR---------------------------NQLSGDISTIGALVDLETLSLA 276
L L VLDLS N++SGD+ + V+LE L ++
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVS 205
Query: 277 SNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
SN F IP +G +L+ LD+SGN LSG +++ T + LK N S N+ G I
Sbjct: 206 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 57/142 (40%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSLG 84
+D+S N SG+IP G++ +L L+LG
Sbjct: 634 LDMSYNMLSGYIPKEIGSM--------------------------------PYLFILNLG 661
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
N + G+IP E+G+LRGL +L L +N L+G I
Sbjct: 662 HN-------------------------DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 145 MGRLKQLRGLSLKYNNLEGSIP 166
M L L + L NNL G IP
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIP 718
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 247 LRVLDLSRNQLSGDIST---IGALVDLETLSLASNQFQGPIPESVG-SLISLESLDLSGN 302
L LDLSRN LSG ++T +G+ L+ L+++SN P S G L SLE LDLS N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 303 NLSGKIPKSL---ETLSHLKQFNASHNRLEGKILV 334
++SG + LK S N++ G + V
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 193
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 293 SLESLDLSGNNLSGKIP--KSLETLSHLKQFNASHNRLEGKILVKGSFK 339
SL SLDLS N+LSG + SL + S LK N S N L+ V G K
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 146
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 126/294 (42%), Gaps = 28/294 (9%)
Query: 70 SALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTL 129
S L+NC +L +SL +N L G +P IG + N GNIP E+G+ R L
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 130 LSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHI 189
L L N NGTI M KQ G I + K I+ G K H
Sbjct: 543 LDLNTNLFNGTIPAAM--FKQ-----------SGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 190 PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRV 249
L +R L N+L++ P ++ S Y +
Sbjct: 590 AGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGHTSPTFDNNGS-----------MMF 636
Query: 250 LDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
LD+S N LSG I IG++ L L+L N G IP+ VG L L LDLS N L G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 309 PKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPP 362
P+++ L+ L + + S+N L G I G F+ F F N LCG P R P
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 132/308 (42%), Gaps = 61/308 (19%)
Query: 24 VMDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSL 83
V+DLS N FSG +P + NL L L L
Sbjct: 347 VLDLSFNEFSGELPESLTNLS-------------------------------ASLLTLDL 375
Query: 84 GSNPLGG-ILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS 142
SN G ILP + N + Q Y N G IP + N L L L N L+GTI
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 143 PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLREL 202
++G L +LR L L N LEG IP +L ++K + + L N L+G IP L++ T+L +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 203 HLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDI- 261
L +N+LT IP + LE L +L LS N SG+I
Sbjct: 496 SLSNNRLTGEIPKWIGRLEN------------------------LAILKLSNNSFSGNIP 531
Query: 262 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQF 321
+ +G L L L +N F G IP ++ +S ++ N ++GK ++ K+
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 322 NASHNRLE 329
+ + N LE
Sbjct: 588 HGAGNLLE 595
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 134/326 (41%), Gaps = 61/326 (18%)
Query: 12 GDSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSA 71
G P +P + + L+ N F+G IP+ FLS
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPD-----------------------------FLSG 291
Query: 72 LTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQE-IGNLRGLTLL 130
C L L L N G +PP G+ S + N G +P + + +RGL +L
Sbjct: 292 A--CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVL 348
Query: 131 SLFNNDLNGTISPTMGRLK-QLRGLSLKYNNLEGSIPYDLCH--LKLMYGIRLTGNKLSG 187
L N+ +G + ++ L L L L NN G I +LC + + L N +G
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVL 247
IPP L++ + L LHL N L+ +IPSSL SL L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK------------------------L 444
Query: 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
R L L N L G+I + + LETL L N G IP + + +L + LS N L+G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 307 KIPKSLETLSHLKQFNASHNRLEGKI 332
+IPK + L +L S+N G I
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNI 530
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 140/340 (41%), Gaps = 70/340 (20%)
Query: 25 MDLSSNSFSGHIP--NTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALS 82
+D+SSN+FS IP L+H F A++ C LK L+
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKL-----------SGDFSRAISTCTELKLLN 253
Query: 83 LGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTI 141
+ SN G +PP+ S Q K G IP + G LT L L N G +
Sbjct: 254 ISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 142 SPTMG-------------------------RLKQLRGLSLKYNNLEGSIPYDLCHLKL-M 175
P G +++ L+ L L +N G +P L +L +
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 176 YGIRLTGNKLSGHIPP--CLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXX 233
+ L+ N SG I P C +L+EL+L +N T IP +L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL---------------- 414
Query: 234 XXXXXXXXQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLI 292
L L LS N LSG I S++G+L L L L N +G IP+ + +
Sbjct: 415 --------SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
+LE+L L N+L+G+IP L ++L + S+NRL G+I
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 143/345 (41%), Gaps = 77/345 (22%)
Query: 24 VMDLSSNSFSGH------IPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRH 77
V+DLS+NS SG + + G L+H ++ S ++ C +
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKH-------------LAISGNKISGDVDVSRCVN 201
Query: 78 LKALSLGSNPLG-GILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNND 136
L+ L + SN GI P +G+ SA Q+ KL G+ + I L LL++ +N
Sbjct: 202 LEFLDVSSNNFSTGI--PFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 137 LNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC-HLKLMYGIRLTGNKLSGHIPPCLAS 195
G I P LK L+ LSL N G IP L + G+ L+GN G +PP S
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 196 LTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRN 255
+ L L L SN + +P ++ L+VLDLS N
Sbjct: 317 CSLLESLALSSNNFSGELP-----------------------MDTLLKMRGLKVLDLSFN 353
Query: 256 QLSGDI--STIGALVDLETLSLASNQFQGP--------------------------IPES 287
+ SG++ S L TL L+SN F GP IP +
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
+ + L SL LS N LSG IP SL +LS L+ N LEG+I
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 29/116 (25%)
Query: 244 LKVLRVLDLSR---------------------------NQLSGDISTIGALVDLETLSLA 276
L L VLDLS N++SGD+ + V+LE L ++
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVS 208
Query: 277 SNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332
SN F IP +G +L+ LD+SGN LSG +++ T + LK N S N+ G I
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 57/142 (40%)
Query: 25 MDLSSNSFSGHIPNTFGNLRHXXXXXXXXXXXXXXXXXADQWSFLSALTNCRHLKALSLG 84
+D+S N SG+IP G++ +L L+LG
Sbjct: 637 LDMSYNMLSGYIPKEIGSM--------------------------------PYLFILNLG 664
Query: 85 SNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPT 144
N + G+IP E+G+LRGL +L L +N L+G I
Sbjct: 665 HN-------------------------DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 145 MGRLKQLRGLSLKYNNLEGSIP 166
M L L + L NNL G IP
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIP 721
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 247 LRVLDLSRNQLSGDIST---IGALVDLETLSLASNQFQGPIPESVG-SLISLESLDLSGN 302
L LDLSRN LSG ++T +G+ L+ L+++SN P S G L SLE LDLS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 303 NLSGKIPKSL---ETLSHLKQFNASHNRLEGKILV 334
++SG + LK S N++ G + V
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 293 SLESLDLSGNNLSGKIP--KSLETLSHLKQFNASHNRLEGKILVKGSFK 339
SL SLDLS N+LSG + SL + S LK N S N L+ V G K
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 6/249 (2%)
Query: 117 IPQEIGNLRGLTLLSLFN-NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLM 175
IP + NL L L + N+L G I P + +L QL L + + N+ G+IP L +K +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 176 YGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXX 235
+ + N LSG +PP ++SL +L + N+++ +IP S S
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 236 XXXXXXQTLKVLRVLDLSRNQLSGDISTI-GALVDLETLSLASNQFQGPIPESVGSLISL 294
L +DLSRN L GD S + G+ + + + LA N + + VG +L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNL 246
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCG 354
LDL N + G +P+ L L L N S N L G+I G+ + F ++ N LCG
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Query: 355 LPKFRVPPC 363
P +P C
Sbjct: 307 SP---LPAC 312
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 405 RSTKKSDHEDFLP--------LATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTIS 456
R K DH +P L +R S ++Q A+D F+ N+LG G FG VYKG ++
Sbjct: 1 RRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA 60
Query: 457 DWTNVAIKIFNLQLER---AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLL 513
D T VA+K L+ ER F +E E++ HRNL+++ C P + L++ +
Sbjct: 61 DGTLVAVK--RLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMA 118
Query: 514 NISIT 518
N S+
Sbjct: 119 NGSVA 123
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 418 LATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER---AF 474
L +R S ++Q A+D F N+LG G FG VYKG ++D VA+K L+ ER
Sbjct: 14 LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVK--RLKEERTQGGE 71
Query: 475 RSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISIT 518
F +E E++ HRNL+++ C P + L++ + N S+
Sbjct: 72 LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVA 115
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 120 EIGNLRGLTLLS--LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177
+I L+ LT L L NN+ I+P + L L GL+L N + P L +L +
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 133
Query: 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP-SSLWSLEYXXXXXXXXXXXXXX 236
+ L+ N +S L+ LTSL++L+ SN++T P ++L +LE
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL 191
Query: 237 XXXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296
L L L + NQ+S DI+ +G L +L+ LSL NQ + ++ SL +L
Sbjct: 192 AK-----LTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 243
Query: 297 LDLSGNNLSGKIPKS-LETLSHLK 319
LDL+ N +S P S L L+ LK
Sbjct: 244 LDLANNQISNLAPLSGLTKLTELK 267
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 27/247 (10%)
Query: 69 LSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQ--EIGNLRG 126
+SAL N +L+ L L + + I P A+ Y+ N N+ + N G
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPL------ANLTKXYSLNLGANHNLSDLSPLSNXTG 156
Query: 127 LTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLS 186
L L++ + + ++P + L L LSL YN +E P L L ++ N+++
Sbjct: 157 LNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212
Query: 187 GHIPPCLASLTSLRELHLGSNKLTSSIP----SSLWSLEYXXXXXXXXXXXXXXXXXXXQ 242
P +A+ T L L +G+NK+T P S L LE +
Sbjct: 213 DITP--VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAV--------K 262
Query: 243 TLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
L L+ L++ NQ+S DIS + L L +L L +NQ E +G L +L +L LS N
Sbjct: 263 DLTKLKXLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 303 NLSGKIP 309
+++ P
Sbjct: 322 HITDIRP 328
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 425 SYLDIQRATDEFNE------CNLLGTGSFGSVYKGTISDWTNVAIK----IFNLQLERAF 474
S+ +++ T+ F+E N +G G FG VYKG +++ T VA+K + ++ E
Sbjct: 10 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELK 68
Query: 475 RSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517
+ FD E +V+ H NL+++L S+ D L++ + N S+
Sbjct: 69 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 111
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 425 SYLDIQRATDEFNE------CNLLGTGSFGSVYKGTISDWTNVAIK----IFNLQLERAF 474
S+ +++ T+ F+E N +G G FG VYKG +++ T VA+K + ++ E
Sbjct: 16 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELK 74
Query: 475 RSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517
+ FD E +V+ H NL+++L S+ D L++ + N S+
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 117
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 425 SYLDIQRATDEFNE------CNLLGTGSFGSVYKGTISDWTNVAIK----IFNLQLERAF 474
S+ +++ T+ F+E N +G G FG VYKG +++ T VA+K + ++ E
Sbjct: 16 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELK 74
Query: 475 RSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISI 517
+ FD E +V+ H NL+++L S+ D L++ + N S+
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 117
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 120 EIGNLRGLTLLS--LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177
+I L+ LT L L NN+ I+P + L L GL+L N + P L +L +
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 133
Query: 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP-SSLWSLEYXXXXXXXXXXXXXX 236
+ L+ N +S L+ LTSL++L SN++T P ++L +LE
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL 191
Query: 237 XXXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296
L L L + NQ+S DI+ +G L +L+ LSL NQ + ++ SL +L
Sbjct: 192 AK-----LTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 243
Query: 297 LDLSGNNLSGKIPKS-LETLSHLK 319
LDL+ N +S P S L L+ LK
Sbjct: 244 LDLANNQISNLAPLSGLTKLTELK 267
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 120 EIGNLRGLTLLS--LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177
+I L+ LT L L NN+ I+P + L L GL+L N + P L +L +
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 133
Query: 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP-SSLWSLEYXXXXXXXXXXXXXX 236
+ L+ N +S L+ LTSL++L SN++T P ++L +LE
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL 191
Query: 237 XXXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296
L L L + NQ+S DI+ +G L +L+ LSL NQ + ++ SL +L
Sbjct: 192 AK-----LTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 243
Query: 297 LDLSGNNLSGKIPKS-LETLSHLK 319
LDL+ N +S P S L L+ LK
Sbjct: 244 LDLANNQISNLAPLSGLTKLTELK 267
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 18/204 (8%)
Query: 120 EIGNLRGLTLLS--LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177
+I L+ LT L L NN+ I+P + L L GL+L N + P L +L +
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 133
Query: 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP-SSLWSLEYXXXXXXXXXXXXXX 236
+ L+ N +S L+ LTSL++L+ G N++T P ++L +LE
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVL 190
Query: 237 XXXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296
L L L + NQ+S DI+ +G L +L+ LSL NQ + ++ SL +L
Sbjct: 191 AK-----LTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 242
Query: 297 LDLSGNNLSGKIPKS-LETLSHLK 319
LDL+ N +S P S L L+ LK
Sbjct: 243 LDLANNQISNLAPLSGLTKLTELK 266
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 18/204 (8%)
Query: 120 EIGNLRGLTLLS--LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177
+I L+ LT L L NN+ I+P + L L GL+L N + P L +L +
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 133
Query: 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP-SSLWSLEYXXXXXXXXXXXXXX 236
+ L+ N +S L+ LTSL++L+ G N++T P ++L +LE
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVL 190
Query: 237 XXXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296
L L L + NQ+S DI+ +G L +L+ LSL NQ + ++ SL +L
Sbjct: 191 AK-----LTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 242
Query: 297 LDLSGNNLSGKIPKS-LETLSHLK 319
LDL+ N +S P S L L+ LK
Sbjct: 243 LDLANNQISNLAPLSGLTKLTELK 266
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 425 SYLDIQRATDEFNE------CNLLGTGSFGSVYKGTISDWTNVAIK----IFNLQLERAF 474
S+ +++ T+ F+E N G G FG VYKG +++ T VA+K + ++ E
Sbjct: 7 SFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELK 65
Query: 475 RSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509
+ FD E +V H NL+++L S+ D L++
Sbjct: 66 QQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVY 100
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 95/203 (46%), Gaps = 43/203 (21%)
Query: 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180
+ NL LT L+LFNN + I P + L L L L N + D+ L + ++
Sbjct: 108 LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 160
Query: 181 T--GNKLSGHIPPCLASLTSLRELHLGSNKLTS-SIPSSLWSLEYXXXXXXXXXXXXXXX 237
GN+++ P LA+LT+L L + SNK++ S+ + L +LE
Sbjct: 161 LSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLES--------------- 203
Query: 238 XXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 297
L + NQ+S DI+ +G L +L+ LSL NQ + ++ SL +L L
Sbjct: 204 ------------LIATNNQIS-DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 248
Query: 298 DLSGNNLSGKIPKS-LETLSHLK 319
DL+ N +S P S L L+ LK
Sbjct: 249 DLANNQISNLAPLSGLTKLTELK 271
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 95/203 (46%), Gaps = 43/203 (21%)
Query: 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180
+ NL LT L+LFNN + I P + L L L L N + D+ L + ++
Sbjct: 107 LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 159
Query: 181 T--GNKLSGHIPPCLASLTSLRELHLGSNKLTS-SIPSSLWSLEYXXXXXXXXXXXXXXX 237
GN+++ P LA+LT+L L + SNK++ S+ + L +LE
Sbjct: 160 LSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLES--------------- 202
Query: 238 XXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 297
L + NQ+S DI+ +G L +L+ LSL NQ + ++ SL +L L
Sbjct: 203 ------------LIATNNQIS-DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 247
Query: 298 DLSGNNLSGKIPKS-LETLSHLK 319
DL+ N +S P S L L+ LK
Sbjct: 248 DLANNQISNLAPLSGLTKLTELK 270
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 415 FLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAF 474
+P ++R +D++ AT+ F+ L+G G FG VYKG + D VA+K + +
Sbjct: 21 LVPFESYR-VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGI 79
Query: 475 RSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITIIRRHL 524
F++E E L H +L+ ++ C + L++ + N + ++RHL
Sbjct: 80 EEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGN---LKRHL 126
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 415 FLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAF 474
+P ++R +D++ AT+ F+ L+G G FG VYKG + D VA+K + +
Sbjct: 21 LVPFESYR-VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGI 79
Query: 475 RSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITIIRRHL 524
F++E E L H +L+ ++ C + L++ + N + ++RHL
Sbjct: 80 EEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGN---LKRHL 126
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 413 EDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWT--------NVAIK 464
E P T + L I + T E +LG+G+FG+VYKG W VAIK
Sbjct: 18 EPLTPSGTAPNQAQLRILKET-ELKRVKVLGSGAFGTVYKGI---WVPEGETVKIPVAIK 73
Query: 465 IFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505
I N +A F E ++ ++ H +L+++L C +P +
Sbjct: 74 ILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ 115
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDW-TNVAIKIFNLQL--ERAFRSFD 478
RR S D + + +G+GSFG+VYKG W +VA+K+ N+ + ++F
Sbjct: 24 RRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFK 80
Query: 479 SECEVLRNVCHRNLIKILSSCSNPDF 504
+E VLR H N++ + + P
Sbjct: 81 NEVGVLRKTRHVNILLFMGYSTKPQL 106
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDW-TNVAIKIFNLQ--LERAFRSFD 478
RR S D + + +G+GSFG+VYKG W +VA+K+ N+ + ++F
Sbjct: 24 RRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFK 80
Query: 479 SECEVLRNVCHRNLIKILSSCSNPDF 504
+E VLR H N++ + + P
Sbjct: 81 NEVGVLRKTRHVNILLFMGYSTKPQL 106
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWT-NVAIKIFNLQL--ERAFRSFD 478
RR S D + + +G+GSFG+VYKG W +VA+K+ N+ + ++F
Sbjct: 23 RRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFK 79
Query: 479 SECEVLRNVCHRNLIKILSSCSNPDF 504
+E VLR H N++ + + P
Sbjct: 80 NEVGVLRKTRHVNILLFMGYSTKPQL 105
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWT-NVAIKIFNLQ--LERAFRSFD 478
RR S D + + +G+GSFG+VYKG W +VA+K+ N+ + ++F
Sbjct: 16 RRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFK 72
Query: 479 SECEVLRNVCHRNLIKILSSCSNPDF 504
+E VLR H N++ + + P
Sbjct: 73 NEVGVLRKTRHVNILLFMGYSTKPQL 98
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
+P+E+ N + LTL+ L NN ++ + + + QL L L YN L P LK +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKL 209
+ L GN +S L++L L +G+N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDWT-NVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 16 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 499 CSNPDF 504
+ P
Sbjct: 73 STKPQL 78
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDWT-NVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 18 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 74
Query: 499 CSNPDF 504
+ P
Sbjct: 75 STKPQL 80
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDW-TNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 21 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 77
Query: 499 CSNPDF 504
+ P
Sbjct: 78 STKPQL 83
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDW-TNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 21 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 77
Query: 499 CSNPDF 504
+ P
Sbjct: 78 STKPQL 83
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDW-TNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 16 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 499 CSNPDF 504
+ P
Sbjct: 73 STKPQL 78
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDW-TNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 32 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 88
Query: 499 CSNPDF 504
+ P
Sbjct: 89 STKPQL 94
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 435 EFNECNLLGTGSFGSVYKGTISDWT--------NVAIKIFNLQL-ERAFRSFDSECEVLR 485
E +LG+G+FG+VYKG W VAIKI N +A F E ++
Sbjct: 16 ELKRVKVLGSGAFGTVYKGI---WVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMA 72
Query: 486 NVCHRNLIKILSSCSNPDFK 505
++ H +L+++L C +P +
Sbjct: 73 SMDHPHLVRLLGVCLSPTIQ 92
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDW-TNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 20 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 76
Query: 499 CSNPDF 504
+ P
Sbjct: 77 STKPQL 82
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDW-TNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 16 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 499 CSNPDF 504
+ P
Sbjct: 73 STAPQL 78
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 440 NLLGTGSFGSVYKGTI--SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCHRNLI 493
+LG G FGSV +G + D T++ + + ++L +R F SE +++ H N+I
Sbjct: 40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 494 KILSSC 499
++L C
Sbjct: 100 RLLGVC 105
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 440 NLLGTGSFGSVYKGTISDW-TNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKIL 496
L+G G FG VY G W VAI++ +++ E ++F E R H N++ +
Sbjct: 39 ELIGKGRFGQVYHGR---WHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFM 95
Query: 497 SSCSNPDFKALM 508
+C +P A++
Sbjct: 96 GACMSPPHLAII 107
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 442 LGTGSFGSVYKGTISDW-TNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSS 498
+G+GSFG+VYKG W +VA+K+ N+ + ++F +E VLR H N++ +
Sbjct: 32 IGSGSFGTVYKGK---WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 88
Query: 499 CSNPDF 504
+ P
Sbjct: 89 STAPQL 94
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 64 DQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGN 123
+Q + L+ L N + L L NPL + + A Q+ + L ++
Sbjct: 79 NQITDLTPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLD--LTSTQITDVTP 130
Query: 124 LRGLTLLSLFNNDLN--GTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181
L GL+ L + DLN ISP G L L+ LS+ N + P L +L + +R
Sbjct: 131 LAGLSNLQVLYLDLNQITNISPLAG-LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRAD 187
Query: 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP 214
NK+S P LASL +L E+HL N+++ P
Sbjct: 188 DNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 442 LGTGSFGSVYKGTISDWT-NVAIKIFNL--QLERAFRSFDSECEVLRNVCHRNLI 493
+G+GSFG+VYKG W +VA+KI + F++F +E VLR H N++
Sbjct: 44 IGSGSFGTVYKGK---WHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNIL 95
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 35/190 (18%)
Query: 155 SLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP 214
S K + +IP D L L NKLS LT LR L+L NKL ++P
Sbjct: 25 SKKLTAIPSNIPADTKKLDLQ------SNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLP 77
Query: 215 SSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSG-DISTIGALVDLETL 273
+ ++ + LK L L ++ N+L I LV+L L
Sbjct: 78 AGIF-----------------------KELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 274 SLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSL-ETLSHLKQFNASHNRLEGKI 332
L NQ + P SL L L L N L +PK + + L+ LK+ +N+L K
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL--KR 171
Query: 333 LVKGSFKNFS 342
+ +G+F +
Sbjct: 172 VPEGAFDKLT 181
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 432 ATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL-------QLERAFRSFDSECEV 483
A +E +G G FG V+KG + D + VAIK L ++ F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 484 LRNVCHRNLIKILSSCSNP 502
+ N+ H N++K+ NP
Sbjct: 77 MSNLNHPNIVKLYGLMHNP 95
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 432 ATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL-------QLERAFRSFDSECEV 483
A +E +G G FG V+KG + D + VAIK L ++ F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 484 LRNVCHRNLIKILSSCSNP 502
+ N+ H N++K+ NP
Sbjct: 77 MSNLNHPNIVKLYGLMHNP 95
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 442 LGTGSFGSVYKGTISDWT-NVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCS 500
LG G FG VY+G ++ VA+K + F E V++ + H NL+++L C+
Sbjct: 19 LGGGQFGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 501 -NPDF----KALMWGRLLN 514
P F + + +G LL+
Sbjct: 78 REPPFYIITEFMTYGNLLD 96
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 432 ATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNL-------QLERAFRSFDSECEV 483
A +E +G G FG V+KG + D + VAIK L ++ F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 484 LRNVCHRNLIKILSSCSNP 502
+ N+ H N++K+ NP
Sbjct: 77 MSNLNHPNIVKLYGLMHNP 95
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 435 EFNECNL-----LGTGSFGSVYKGTI------SDWTNVAIKIFNLQLERA-FRSFDSECE 482
EF NL LG G FG V K T + +T VA+K+ + R SE
Sbjct: 19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFN 78
Query: 483 VLRNVCHRNLIKILSSCSN 501
VL+ V H ++IK+ +CS
Sbjct: 79 VLKQVNHPHVIKLYGACSQ 97
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 435 EFNECNL-----LGTGSFGSVYKGTI------SDWTNVAIKIFNLQLERA-FRSFDSECE 482
EF NL LG G FG V K T + +T VA+K+ + R SE
Sbjct: 19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFN 78
Query: 483 VLRNVCHRNLIKILSSCSN 501
VL+ V H ++IK+ +CS
Sbjct: 79 VLKQVNHPHVIKLYGACSQ 97
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 435 EFNECNL-----LGTGSFGSVYKGTI------SDWTNVAIKIFNLQLERA-FRSFDSECE 482
EF NL LG G FG V K T + +T VA+K+ + R SE
Sbjct: 19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFN 78
Query: 483 VLRNVCHRNLIKILSSCSN 501
VL+ V H ++IK+ +CS
Sbjct: 79 VLKQVNHPHVIKLYGACSQ 97
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 405 RSTKKSDHEDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKG-TISDWTNVAI 463
RST++ D E L L+ DE + +LG G++G VY G +S+ +AI
Sbjct: 3 RSTEEGDCESDL----------LEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAI 52
Query: 464 KIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNISITIIRR 522
K + R + E + +++ H+N+++ L S S F + ++ S++ + R
Sbjct: 53 KEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLR 111
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNL 304
L+ L L NQL + +L L L L +NQ +P +V L+ L+ L + N L
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKL 124
Query: 305 SGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAES---FFGN 349
+ ++P+ +E L+HL N+L K + G+F S+ + FGN
Sbjct: 125 T-ELPRGIERLTHLTHLALDQNQL--KSIPHGAFDRLSSLTHAYLFGN 169
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 33 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 92
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 93 IEILKSLQHDNIVKYKGVC 111
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 6 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 65
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 66 IEILKSLQHDNIVKYKGVC 84
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 5 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 64
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 65 IEILKSLQHDNIVKYKGVC 83
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 2 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 61
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 62 IEILKSLQHDNIVKYKGVC 80
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 102/265 (38%), Gaps = 26/265 (9%)
Query: 78 LKALSLGSNPLGGILP---PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFN 134
L+ L L SNPL P IG A N N L + E+ N + LSL N
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLAN 231
Query: 135 NDLNGTISPTMGRLK--QLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPC 192
N L T T LK L L L YNNL +L + + L N + P
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 193 LASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDL 252
L++LR L L S+ SL S Q LK L L++
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSV--SLAS-------------HPNIDDFSFQWLKYLEYLNM 336
Query: 253 SRNQL-SGDISTIGALVDLETLSLAS--NQFQGPIPESVGSLI--SLESLDLSGNNLSGK 307
N + S +T LV L+ LSL+ Q E+ SL L +L+L+ N++S
Sbjct: 337 DDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKI 396
Query: 308 IPKSLETLSHLKQFNASHNRLEGKI 332
+ L L+ + N +E K+
Sbjct: 397 ANGTFSWLGQLRILDLGLNEIEQKL 421
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 3 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 62
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 63 IEILKSLQHDNIVKYKGVC 81
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 7 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 66
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 67 IEILKSLQHDNIVKYKGVC 85
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 8 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 67
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 68 IEILKSLQHDNIVKYKGVC 86
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 1 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 60
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 61 IEILKSLQHDNIVKYKGVC 79
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 9 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 68
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 69 IEILKSLQHDNIVKYKGVC 87
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 5 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 64
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 65 IEILKSLQHDNIVKYKGVC 83
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 431 RATDEFNECNL-----LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSE 480
R +F E +L LG G+FGSV + D T VA+K E R F+ E
Sbjct: 5 RDPTQFEERHLKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 64
Query: 481 CEVLRNVCHRNLIKILSSC 499
E+L+++ H N++K C
Sbjct: 65 IEILKSLQHDNIVKYKGVC 83
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 442 LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
LG G+FGSV + D T VA+K E R F+ E E+L+++ H N++K
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 497 SSC 499
C
Sbjct: 96 GVC 98
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
+ C ++G GSFG V++ + + VAIK + ++ F+ + E +++R V H N++ +
Sbjct: 42 YTNCKVIGNGSFGVVFQAKLVESDEVAIK--KVLQDKRFK--NRELQIMRIVKHPNVVDL 97
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 442 LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
LG G+FGSV + D T VA+K E R F+ E E+L+++ H N++K
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 497 SSC 499
C
Sbjct: 78 GVC 80
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 442 LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
LG G+FGSV + D T VA+K E R F+ E E+L+++ H N++K
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 497 SSC 499
C
Sbjct: 96 GVC 98
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 442 LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
LG G+FGSV + D T VA+K E R F+ E E+L+++ H N++K
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 497 SSC 499
C
Sbjct: 76 GVC 78
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
++G G+FG V K + W + I ++ E ++F E L V H N++K+ +C
Sbjct: 15 EVVGRGAFGVVCK---AKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGAC 71
Query: 500 SNP 502
NP
Sbjct: 72 LNP 74
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 440 NLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
++G G+FG V K + W + I ++ E ++F E L V H N++K+ +C
Sbjct: 14 EVVGRGAFGVVCK---AKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGAC 70
Query: 500 SNP 502
NP
Sbjct: 71 LNP 73
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 442 LGTGSFGSVYK---GTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
LG G+FGSV + D T VA+K E R F+ E E+L+++ H N++K
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 497 SSC 499
C
Sbjct: 78 GVC 80
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 427 LDIQRATDEFNECNLLGTGSFGSVYKG-TISDWTNVAIKIFNLQLERAFRSFDSECEVLR 485
L+ DE + +LG G++G VY G +S+ +AIK + R + E + +
Sbjct: 1 LEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHK 60
Query: 486 NVCHRNLIKILSSCSNPDFKALMWGRLLNISITIIRR 522
++ H+N+++ L S S F + ++ S++ + R
Sbjct: 61 HLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLR 97
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 242 QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLS 300
Q L +R L L N+L DIS + L +L L L NQ Q +P V L +L+ L L
Sbjct: 60 QYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLV 117
Query: 301 GNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
N L + L++L N +HN+L+ L KG F +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLT 157
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 74/187 (39%), Gaps = 34/187 (18%)
Query: 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXX 237
+ L GNKL H L LT+L L L N+L S+P+ ++
Sbjct: 68 LALGGNKL--HDISALKELTNLTYLILTGNQL-QSLPNGVFD------------------ 106
Query: 238 XXXXQTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASNQFQGPIPESV-GSLISLE 295
L L+ L L NQL S L +L L+LA NQ Q +P+ V L +L
Sbjct: 107 -----KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLT 160
Query: 296 SLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFF---GNYAL 352
LDLS N L + L+ LK N+L K + G F ++ + N
Sbjct: 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL--KSVPDGVFDRLTSLQYIWLHDNPWD 218
Query: 353 CGLPKFR 359
C P R
Sbjct: 219 CTCPGIR 225
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDS----ECEVLRNV 487
+ D + LG G++G VYK I TN + I ++LE E +L+ +
Sbjct: 32 SIDRYRRITKLGEGTYGEVYKA-IDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKEL 90
Query: 488 CHRNLIKILS 497
HRN+I++ S
Sbjct: 91 QHRNIIELKS 100
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 243 TLKVLRVLDLSRNQLSGDISTI-GALVDLETLSLASNQFQ-GPIPESVGSLISLESLDLS 300
+L+ L LD+S + I L LE L +A N FQ +P+ L +L LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 301 GNNLSGKIPKSLETLSHLKQFNASHN 326
L P + +LS L+ N SHN
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 264 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
IG L L+ L++A N Q +PE +L +LE LDLS N + L L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+VLDLSR ++ + +L L TL L N Q + L SL+ L NL+
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 306 GKIPKSLETLSHLKQFNASHNRLEG 330
+ L LK+ N +HN ++
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQS 138
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 243 TLKVLRVLDLSRNQLSGDISTI-GALVDLETLSLASNQFQ-GPIPESVGSLISLESLDLS 300
+L+ L LD+S + I L LE L +A N FQ +P+ L +L LDLS
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 301 GNNLSGKIPKSLETLSHLKQFNASHN 326
L P + +LS L+ N SHN
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 264 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
IG L L+ L++A N Q +PE +L +LE LDLS N + L L +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+VLDLSR ++ + +L L TL L N Q + L SL+ L NL+
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 306 GKIPKSLETLSHLKQFNASHNRLEG 330
+ L LK+ N +HN ++
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQS 162
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + ++L +A + E V+ +V
Sbjct: 50 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASVD 109
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 110 NPHVCRLLGIC 120
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 442 LGTGSFGSVYKGTISDWTNV--AIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
LG G+FG VYK + T+V A K+ + + E + E ++L + H N++K+L +
Sbjct: 45 LGDGAFGKVYKAQNKE-TSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 243 TLKVLRVLDLSRNQLSGDISTI-GALVDLETLSLASNQFQGP-IPESVGSLISLESLDLS 300
+L+ L LD+S + I L LE L +A N FQ +P+ L +L LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 301 GNNLSGKIPKSLETLSHLKQFNASHN 326
L P + +LS L+ N SHN
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 442 LGTGSFGSVYKGTISDWTNV--AIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
LG G+FG VYK + T+V A K+ + + E + E ++L + H N++K+L +
Sbjct: 45 LGDGAFGKVYKAQNKE-TSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 442 LGTGSFGSVYKGTISDWTNV--AIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
LG G+FG VYK + T+V A K+ + + E + E ++L + H N++K+L +
Sbjct: 45 LGDGAFGKVYKAQNKE-TSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 247 LRVLDLSRNQLSGDIS--TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNL 304
LR LDL + IS L +L L+LA + IP ++ LI L+ LDLSGN+L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219
Query: 305 SGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSA 343
S P S + L HL++ ++++ ++ + +F N +
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQ--VIERNAFDNLQS 256
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKIRHEKLVQLYAVVSE 84
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 17 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 76
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 77 NPHVCRLLGICLTSTVQLIMQLMPFGXLLDYVREH 111
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 20 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 79
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 80 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 114
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 19 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 78
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 79 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 113
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 18 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 78 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 112
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 18 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 78 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 112
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 76 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 110
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 18 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 78 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 112
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 17 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 76
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 77 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 111
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 20 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 79
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 80 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 114
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIF---NLQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
LG G FG V+ GT + T VAIK N+ E +F E +V++ + H L+++ +
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSPE----AFLQEAQVMKKLRHEKLVQLYAV 248
Query: 499 CSN 501
S
Sbjct: 249 VSE 251
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
Query: 502 PDFKALM 508
+M
Sbjct: 85 EPIYIVM 91
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 64 DQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGN 123
+Q + L+ L N + L L NPL + + A Q+ + L ++
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLD--LTSTQITDVTP 124
Query: 124 LRGLTLLSLFNNDLN--GTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181
L GL+ L + DLN ISP G L L+ LS+ + P L +L + ++
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAG-LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181
Query: 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP 214
NK+S P LASL +L E+HL +N+++ P
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
Length = 352
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQ 469
T++ C +G G FG V++ TI+D T VAIKI ++
Sbjct: 35 TEKLQRCEKIGEGVFGEVFQ-TIADHTPVAIKIIAIE 70
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LGTG FG V G +VAIK+ + + F E +V+ N+ H L+++ C+
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LGTG FG V G +VAIK+ + + F E +V+ N+ H L+++ C+
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90
>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
Pyrazolo-Pyrimidine Ligand
pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
Imidazo-Pyridazine Ligand
pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
Ligand
pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
5-Iodotubercidin
Length = 357
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQ 469
T++ C +G G FG V++ TI+D T VAIKI ++
Sbjct: 40 TEKLQRCEKIGEGVFGEVFQ-TIADHTPVAIKIIAIE 75
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 242 QTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASNQFQ-GPIPES--VGSLISLESL 297
Q L +LRVL+LS L + + + L DL L+L N FQ G I ++ + + SLE L
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEIL 480
Query: 298 DLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL-----VKGSFKNFSA 343
LS NL ++ L ++ + SHN L G + +KG + N ++
Sbjct: 481 ILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMAS 531
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 24/212 (11%)
Query: 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYGI 178
++ NLR L L+L N+ G QL L + + +L P+ +L L+ +
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXX 238
L+ L LA L LR L+L N S L
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLL------------------ 471
Query: 239 XXXQTLKVLRVLDLSR-NQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 297
Q + L +L LS N LS D L ++ L L+ N G +++ L L L
Sbjct: 472 ---QMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YL 527
Query: 298 DLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
+++ NN+ P L LS N SHN L+
Sbjct: 528 NMASNNIRIIPPHLLPALSQQSIINLSHNPLD 559
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
++ LDL+ L+G S I + L+ L L +N F + S SL L + GN
Sbjct: 279 VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKL 338
Query: 307 KI-PKSLETLSHLKQFNASHNRLEGKILVKGSFKNF 341
+ + LE L +L++ + SH+ +E KN
Sbjct: 339 DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNL 374
>pdb|2VUW|A Chain A, Structure Of Human Haspin Kinase Domain
Length = 336
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQ 469
T++ C +G G FG V++ TI+D T VAIKI ++
Sbjct: 19 TEKLQRCEKIGEGVFGEVFQ-TIADHTPVAIKIIAIE 54
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LGTG FG V G +VAIK+ + + F E +V+ N+ H L+++ C+
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 81
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LGTG FG V G +VAIK+ + + F E +V+ N+ H L+++ C+
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LGTG FG V G +VAIK+ + + F E +V+ N+ H L+++ C+
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 81
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 81
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 77
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 75
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 73
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LGTG FG V G +VAIK+ + + F E +V+ N+ H L+++ C+
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 74
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 74
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 84
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LGTG FG V G +VAIK+ + + F E +V+ N+ H L+++ C+
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 70
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 333
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + SF E ++++ + H L+++ + S
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGT-MSPESFLEEAQIMKKLKHDKLVQLYAVVSE 75
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 435 EFNECNLL---GTGSFGSVYKGTISDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCH 489
+F + N L G ++KG ++ +K+ ++ R R F+ EC LR H
Sbjct: 8 DFKQLNFLTKLNENHSGELWKGRWQG-NDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSH 66
Query: 490 RNLIKILSSCSNP 502
N++ +L +C +P
Sbjct: 67 PNVLPVLGACQSP 79
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 25/159 (15%)
Query: 148 LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSN 207
L +L L+L YN L+ L + + L N+L+ LT L +L+LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 208 KLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQL-SGDISTIGA 266
+L S+PS ++ L L+ L L+ NQL S
Sbjct: 118 QL-KSLPSGVFD-----------------------RLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 267 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L +L+TLSL++NQ Q + L L+++ L GN
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 76 NPHVCRLLGIC 86
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 148 LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSN 207
L +L L+L YN L+ L + + L N+L+ LT L +L+LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 208 KLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQL-SGDISTIGA 266
+L S+PS ++ L L+ L L+ NQL S
Sbjct: 118 QL-KSLPSGVFD-----------------------RLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 267 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
L +L+TLSL++NQ Q + L L+++ L GN
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 41 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 100
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 101 NPHVCRLLGIC 111
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 243 TLKVLRVLDLSRNQLSGDISTI-GALVDLETLSLASNQFQ-GPIPESVGSLISLESLDLS 300
+L+ L LD+S + I L LE L +A N FQ +P+ L +L LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 301 GNNLSGKIPKSLETLSHLKQFNASHNRLE 329
L P + +LS L+ N + N+L+
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 264 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
IG L L+ L++A N Q +PE +L +LE LDLS N + L L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+VLDLSR ++ + +L L TL L N Q + L SL+ L NL+
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 306 GKIPKSLETLSHLKQFNASHNRLE 329
+ L LK+ N +HN ++
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQ 137
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 19 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 78
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 79 NPHVCRLLGIC 89
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCH-LKLMYGIRLTGNK 184
+T+L+L +N L + R QL L + +N + P +LC L ++ + L N+
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE 89
Query: 185 LSGHIPPCLASLTSLRELHLGSNKL 209
LS A T+L ELHL SN +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSI 114
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 244 LKVLRVLDLSRNQLS---------GDISTIGALVDLETLSLASNQFQGPIPESVGSLISL 294
L+ L +LDL N L+ G I + L L L+L SN F E L L
Sbjct: 508 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 567
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG--KILVKGSFKNFS 342
+ +DL NNL+ LK N N + K + +F+N +
Sbjct: 568 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 617
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 23 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 82
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 83 NPHVCRLLGIC 93
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 23 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 82
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 83 NPHVCRLLGIC 93
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ GT + T VAIK + +F E +V++ + H L+++ + S
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 19 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 78
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 79 NPHVCRLLGIC 89
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 435 EFNECNLL---GTGSFGSVYKGTISDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCH 489
+F + N L G ++KG ++ +K+ ++ R R F+ EC LR H
Sbjct: 8 DFKQLNFLTKLNENHSGELWKGRWQG-NDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSH 66
Query: 490 RNLIKILSSCSNP 502
N++ +L +C +P
Sbjct: 67 PNVLPVLGACQSP 79
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 19 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 78
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 79 NPHVCRLLGIC 89
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 76 NPHVCRLLGIC 86
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 18 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 78 NPHVCRLLGIC 88
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 76 NPHVCRLLGIC 86
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 22 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 81
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 82 NPHVCRLLGIC 92
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 18 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 77
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 78 NPHVCRLLGIC 88
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 26 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 85
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 86 NPHVCRLLGIC 96
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCH-LKLMYGIRLTGNK 184
+T+L+L +N L + R QL L + +N + P +LC L ++ + L N+
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE 94
Query: 185 LSGHIPPCLASLTSLRELHLGSNKL 209
LS A T+L ELHL SN +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSI 119
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 244 LKVLRVLDLSRNQLS---------GDISTIGALVDLETLSLASNQFQGPIPESVGSLISL 294
L+ L +LDL N L+ G I + L L L+L SN F E L L
Sbjct: 513 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 572
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG--KILVKGSFKNFS 342
+ +DL NNL+ LK N N + K + +F+N +
Sbjct: 573 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 622
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 13 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 72
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 73 NPHVCRLLGIC 83
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
L+ LDL+ LS S + L L+ L L++N+F+ S + SL L + GN
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 307 KI-PKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
++ LE L +L++ + SH+ +E +N S
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 114 KGNIPQ--EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCH 171
KGNI + + L L +L L DL+ LK + + L +N L S L H
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
Query: 172 LKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEY 222
LK +Y + L N +S +P L L+ R ++L N L + S+++ LE+
Sbjct: 523 LKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC-SNIYFLEW 571
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 242 QTLKVLRVLDLSRNQLSGDIST---IGALVDLETLSLASNQF-QGPIPE--SVGSLISLE 295
Q L +L+VL+LS + L DIS+ L L+ L+L N F +G I + S+ +L LE
Sbjct: 422 QNLHLLKVLNLSHSLL--DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 296 SLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL-----EGKILVKGSFKNFSA 343
L LS +LS + +L + + SHNRL E +KG + N ++
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCH-LKLMYGIRLTGNK 184
+T+L+L +N L + R QL L + +N + P +LC L ++ + L N+
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE 84
Query: 185 LSGHIPPCLASLTSLRELHLGSNKL 209
LS A T+L ELHL SN +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 244 LKVLRVLDLSRNQLS---------GDISTIGALVDLETLSLASNQFQGPIPESVGSLISL 294
L+ L +LDL N L+ G I + L L L+L SN F E L L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG--KILVKGSFKNFS 342
+ +DL NNL+ LK N N + K + +F+N +
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 69
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 70 NPHVCRLLGIC 80
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 417 PLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRS 476
P W + ++ +I R + + + LG G FG V+ T + T VA+K + +
Sbjct: 168 PQKPWEKDAW-EIPRESLKLEKK--LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEA 223
Query: 477 FDSECEVLRNVCHRNLIKI 495
F +E V++ + H L+K+
Sbjct: 224 FLAEANVMKTLQHDKLVKL 242
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +LG+G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 76 NPHVCRLLGIC 86
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDS------- 479
LD++ + + + LG G F +VYK + TN + I ++L + D
Sbjct: 3 LDVKSRAKRYEKLDFLGEGQFATVYKARDKN-TNQIVAIKKIKLGHRSEAKDGINRTALR 61
Query: 480 ECEVLRNVCHRNLIKILSS 498
E ++L+ + H N+I +L +
Sbjct: 62 EIKLLQELSHPNIIGLLDA 80
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 244 LKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 303
L L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N+
Sbjct: 130 LPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186
Query: 304 LSGKIPKSLETLSHLKQFNA 323
+S L L+ LK +
Sbjct: 187 IS-----DLRALAGLKNLDV 201
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 417 PLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRS 476
P W + ++ +I R + + + LG G FG V+ T + T VA+K + +
Sbjct: 174 PQKPWEKDAW-EIPRESLKLEKK--LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEA 229
Query: 477 FDSECEVLRNVCHRNLIKI 495
F +E V++ + H L+K+
Sbjct: 230 FLAEANVMKTLQHDKLVKL 248
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 442 LGTGSFGSVYKGTISDW-------TNVAIKIFN---LQLERAFRSFDSECEVLRNVCHRN 491
LG GSFG V +G +W +VA+K L A F E + ++ HRN
Sbjct: 26 LGDGSFGVVRRG---EWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 82
Query: 492 LIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
LI++ P K + L + +R+H
Sbjct: 83 LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKH 114
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKI 495
LG G FG V+ T + T VA+K + +F +E V++ + H L+K+
Sbjct: 23 LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKL 75
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 442 LGTGSFGSVYKGTISDW-------TNVAIKIFN---LQLERAFRSFDSECEVLRNVCHRN 491
LG GSFG V +G +W +VA+K L A F E + ++ HRN
Sbjct: 26 LGDGSFGVVRRG---EWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 82
Query: 492 LIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
LI++ P K + L + +R+H
Sbjct: 83 LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKH 114
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 442 LGTGSFGSVYKGTISDW-------TNVAIKIFN---LQLERAFRSFDSECEVLRNVCHRN 491
LG GSFG V +G +W +VA+K L A F E + ++ HRN
Sbjct: 16 LGDGSFGVVRRG---EWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 72
Query: 492 LIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
LI++ P K + L + +R+H
Sbjct: 73 LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKH 104
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 442 LGTGSFGSVYKGTISDW-------TNVAIKIFN---LQLERAFRSFDSECEVLRNVCHRN 491
LG GSFG V +G +W +VA+K L A F E + ++ HRN
Sbjct: 16 LGDGSFGVVRRG---EWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 72
Query: 492 LIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
LI++ P K + L + +R+H
Sbjct: 73 LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKH 104
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKI 465
E + +LG+G+FG+VYKG I D NV I +
Sbjct: 18 ELRKVKVLGSGAFGTVYKGIWIPDGENVKIPV 49
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 442 LGTGSFGSVYKGTISDW-------TNVAIKIFN---LQLERAFRSFDSECEVLRNVCHRN 491
LG GSFG V +G +W +VA+K L A F E + ++ HRN
Sbjct: 20 LGDGSFGVVRRG---EWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 76
Query: 492 LIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
LI++ P K + L + +R+H
Sbjct: 77 LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKH 108
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 442 LGTGSFGSVYKGTISDW-------TNVAIKIFN---LQLERAFRSFDSECEVLRNVCHRN 491
LG GSFG V +G +W +VA+K L A F E + ++ HRN
Sbjct: 16 LGDGSFGVVRRG---EWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 72
Query: 492 LIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
LI++ P K + L + +R+H
Sbjct: 73 LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKH 104
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 442 LGTGSFGSVYKGTISDW-------TNVAIKIFN---LQLERAFRSFDSECEVLRNVCHRN 491
LG GSFG V +G +W +VA+K L A F E + ++ HRN
Sbjct: 20 LGDGSFGVVRRG---EWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 76
Query: 492 LIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
LI++ P K + L + +R+H
Sbjct: 77 LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKH 108
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + +AF+ + E +++R + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQGKAFK--NRELQIMRKLDHCNIVR 77
Query: 495 I 495
+
Sbjct: 78 L 78
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + +AF+ + E +++R + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQGKAFK--NRELQIMRKLDHCNIVR 77
Query: 495 I 495
+
Sbjct: 78 L 78
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +L +G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 23 EFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 82
Query: 489 HRNLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523
+ ++ ++L C + +M + +R H
Sbjct: 83 NPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREH 117
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + +AF+ + E +++R + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQGKAFK--NRELQIMRKLDHCNIVR 77
Query: 495 I 495
+
Sbjct: 78 L 78
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNV-AIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
LG G+FG VYK + + A K+ + E + E E+L H ++K+L +
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGA 76
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNV-AIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
LG G+FG VYK + + A K+ + E + E E+L H ++K+L +
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGA 84
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
F + + +G GSFG VYKG I + T VAIKI +L+ + I
Sbjct: 21 FTKLDRIGKGSFGEVYKG-IDNHTKEVVAIKIIDLE-----------EAEDEIEDIQQEI 68
Query: 494 KILSSCSNPDFKALMWGRLLNISITIIRRHL 524
+LS C +P L + + II +L
Sbjct: 69 TVLSQCDSPYITRYFGSYLKSTKLWIIMEYL 99
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRS----FDSECEVLRNVCHRNLIKILS 497
+G GSF +VYKG ++ T V + LQ + +S F E E L+ + H N+++
Sbjct: 34 IGRGSFKTVYKGLDTE-TTVEVAWCELQDRKLTKSERQRFKEEAEXLKGLQHPNIVRFYD 92
Query: 498 S 498
S
Sbjct: 93 S 93
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 101 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 156
Query: 495 I 495
+
Sbjct: 157 L 157
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 242 QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 301
+ L LRVLDLS N+L+ + +G+ L+ N +P G+L +L+ L + G
Sbjct: 267 KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEG 325
Query: 302 NNLSGKIPKSL 312
N L + K L
Sbjct: 326 NPLEKQFLKIL 336
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 50 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 105
Query: 495 I 495
+
Sbjct: 106 L 106
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 58 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 113
Query: 495 I 495
+
Sbjct: 114 L 114
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 111
Query: 495 I 495
+
Sbjct: 112 L 112
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 35 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 90
Query: 495 I 495
+
Sbjct: 91 L 91
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 111
Query: 495 I 495
+
Sbjct: 112 L 112
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 30 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 85
Query: 495 I 495
+
Sbjct: 86 L 86
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 244 LKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 303
L L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N+
Sbjct: 133 LPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189
Query: 304 LSGKIPKSLETLSHLKQFNA 323
+S L L+ LK +
Sbjct: 190 IS-----DLRALAGLKNLDV 204
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 27 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 82
Query: 495 I 495
+
Sbjct: 83 L 83
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 60 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 115
Query: 495 I 495
+
Sbjct: 116 L 116
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 41 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 96
Query: 495 I 495
+
Sbjct: 97 L 97
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 34 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 89
Query: 495 I 495
+
Sbjct: 90 L 90
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 26 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 81
Query: 495 I 495
+
Sbjct: 82 L 82
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 34 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 89
Query: 495 I 495
+
Sbjct: 90 L 90
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 89
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 77
Query: 495 I 495
+
Sbjct: 78 L 78
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 23 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 78
Query: 495 I 495
+
Sbjct: 79 L 79
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 77
Query: 495 I 495
+
Sbjct: 78 L 78
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 77
Query: 495 I 495
+
Sbjct: 78 L 78
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN-VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK 494
+ + ++G GSFG VY+ + D VAIK + ++ F+ + E +++R + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQDKRFK--NRELQIMRKLDHCNIVR 77
Query: 495 I 495
+
Sbjct: 78 L 78
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 85
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 87
>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
pdb|4EUT|B Chain B, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
Length = 396
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 440 NLLGTGSFGSVYKGTISDWTNV-AIKIFN-LQLERAFRSFDSECEVLRNVCHRNLIKILS 497
++LG G+ +V++G ++ AIK+FN + R E EVL+ + H+N++K+ +
Sbjct: 15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFA 74
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 88
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 440 NLLGTGSFGSVYKGTISDWTNV-AIKIFN-LQLERAFRSFDSECEVLRNVCHRNLIKILS 497
++LG G+ +V++G ++ AIK+FN + R E EVL+ + H+N++K+ +
Sbjct: 15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFA 74
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 245 KVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN- 302
+ ++ LDLS N+++ S + V+L+ L L SN +S SL SLE LDLS N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 303 --NLSGKIPKSLETLSHL 318
NLS K L +L+ L
Sbjct: 112 LSNLSSSWFKPLSSLTFL 129
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 242 QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 301
Q L+ LDL+ L G S + L L+ L L+ N F S + SL L + G
Sbjct: 272 QCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRG 331
Query: 302 NNLSGKI-PKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342
N + LE L +L+ + SHN +E KN S
Sbjct: 332 NVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLS 373
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 85
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 75
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 81
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 84
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 80
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 442 LGTGSFGSVYKGT-ISDWTNVAIK---IFNLQLERAFRSFDSECEVLRNVCHRNLIKILS 497
+G G F VY+ + D VA+K IF+L +A E ++L+ + H N+IK +
Sbjct: 40 IGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYA 99
Query: 498 S 498
S
Sbjct: 100 S 100
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 245 KVLRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN- 302
+ ++ LDLS N+++ S + V+L+ L L SN +S SL SLE LDLS N
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 303 --NLSGKIPKSLETLSHL 318
NLS K L +L+ L
Sbjct: 86 LSNLSSSWFKPLSSLTFL 103
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNL 468
D L+G G +G+VYKG++ D VA+K+F+
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSF 46
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G + T VA+K Q + +F +E +++ + H+ L+++ + +
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 74
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 244 LKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 303
L L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N+
Sbjct: 133 LPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189
Query: 304 LSGKIPKSLETLSHLKQFNA 323
+S L L+ LK +
Sbjct: 190 IS-----DLRALAGLKNLDV 204
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +L +G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 23 EFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 82
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 83 NPHVCRLLGIC 93
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 445 GSFGSVYKGTISDWTNV--AIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSS 498
G FG VYK + T+V A K+ + + E + E ++L + H N++K+L +
Sbjct: 21 GDFGKVYKAQNKE-TSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 75
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 244 LKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 303
L L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N+
Sbjct: 131 LPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 187
Query: 304 LSGKIPKSLETLSHLKQFNA 323
+S L L+ LK +
Sbjct: 188 IS-----DLRALAGLKNLDV 202
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G ++ T VA+K + ++F E +++ + H L+++ + +
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTK 78
Query: 502 PD 503
+
Sbjct: 79 EE 80
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
EF + +L +G+FG+VYKG I + V I + +L +A + E V+ +V
Sbjct: 16 EFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 75
Query: 489 HRNLIKILSSC 499
+ ++ ++L C
Sbjct: 76 NPHVCRLLGIC 86
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 93 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 150
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 151 NVLSLLGIC 159
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L L L N+++ DI+ + L L+TLSL NQ + +P + L L++L LS N++S
Sbjct: 134 LESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHIS 189
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 52 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 109
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 110 NVLSLLGIC 118
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 435 EFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCH 489
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 38 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 95
Query: 490 RNLIKILSSC 499
N++ +L C
Sbjct: 96 PNVLSLLGIC 105
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 244 LKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 303
L L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N+
Sbjct: 153 LPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 209
Query: 304 LSGKIPKSLETLSHLKQFNA 323
+S L L+ LK +
Sbjct: 210 IS-----DLRALAGLKNLDV 224
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 53 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 110
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 111 NVLSLLGIC 119
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 34 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 91
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 92 NVLSLLGIC 100
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 29 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 86
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 87 NVLSLLGIC 95
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 244 LKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 303
L L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N+
Sbjct: 128 LPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNH 184
Query: 304 LS 305
+S
Sbjct: 185 IS 186
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 149 KQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNK 208
+ L L L +N ++ DL +Y + L N++ L+ L +LRELHL +NK
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 209 LTSSIPSSLWSLE 221
L S +P+ L L+
Sbjct: 253 L-SRVPAGLPDLK 264
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 31 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 88
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 89 NVLSLLGIC 97
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 33 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 90
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 91 NVLSLLGIC 99
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 440 NLLGTGSFGSVYKG---TISDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLI 493
++G G FG VYKG T S V + I L+ E+ F E ++ H N+I
Sbjct: 50 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNII 109
Query: 494 KILSSCSNPDFKALM 508
++ S +K +M
Sbjct: 110 RLEGVISK--YKPMM 122
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 35 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 92
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 93 NVLSLLGIC 101
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 26 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 83
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 84 NVLSLLGIC 92
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 33 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 90
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 91 NVLSLLGIC 99
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 34 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 91
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 92 NVLSLLGIC 100
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 34 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 91
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 92 NVLSLLGIC 100
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 32 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 89
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 90 NVLSLLGIC 98
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 35 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 92
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 93 NVLSLLGIC 101
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501
LG G FG V+ G ++ T VA+K + ++F E +++ + H L+++ + +
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTR 79
Query: 502 PD 503
+
Sbjct: 80 EE 81
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 34 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 91
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 92 NVLSLLGIC 100
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
F + +G GSFG V+KG I + T VAIKI +L+ + I
Sbjct: 24 FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAED-----------EIEDIQQEI 71
Query: 494 KILSSCSNPDFKALMWGRLLNISITIIRRHL 524
+LS C +P L + + II +L
Sbjct: 72 TVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 102
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N++S
Sbjct: 154 LESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS- 209
Query: 307 KIPKSLETLSHLKQFNA 323
L L+ LK +
Sbjct: 210 ----DLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N++S
Sbjct: 154 LESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS- 209
Query: 307 KIPKSLETLSHLKQFNA 323
L L+ LK +
Sbjct: 210 ----DLRALAGLKNLDV 222
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N++S
Sbjct: 154 LESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS- 209
Query: 307 KIPKSLETLSHLKQFNA 323
L L+ LK +
Sbjct: 210 ----DLRALAGLKNLDV 222
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLER-----AFRSFDSECEVLRNVCHR 490
FNE ++G G FG VY GT+ D I L R F +E ++++ H
Sbjct: 32 FNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 89
Query: 491 NLIKILSSC 499
N++ +L C
Sbjct: 90 NVLSLLGIC 98
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 29/154 (18%)
Query: 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXX 237
+ L GNKL H L LT+L L L N+L S+P+ ++
Sbjct: 68 LALGGNKL--HDISALKELTNLTYLILTGNQL-QSLPNGVFD------------------ 106
Query: 238 XXXXQTLKVLRVLDLSRNQL-SGDISTIGALVDLETLSLASNQFQGPIPESV-GSLISLE 295
L L+ L L NQL S L +L L L NQ Q +P+ V L +L
Sbjct: 107 -----KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLT 160
Query: 296 SLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329
LDL N L + L+ LKQ + + N+L+
Sbjct: 161 RLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
F + +G GSFG V+KG I + T VAIKI +L+ + I
Sbjct: 29 FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAED-----------EIEDIQQEI 76
Query: 494 KILSSCSNPDFKALMWGRLLNISITIIRRHL 524
+LS C +P L + + II +L
Sbjct: 77 TVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 107
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
F + +G GSFG V+KG I + T VAIKI +L+ + I
Sbjct: 9 FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAED-----------EIEDIQQEI 56
Query: 494 KILSSCSNPDFKALMWGRLLNISITIIRRHL 524
+LS C +P L + + II +L
Sbjct: 57 TVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 87
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G D T VA+K N R F +E V++ ++++
Sbjct: 24 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 83
Query: 495 ILSSCSN 501
+L S
Sbjct: 84 LLGVVSK 90
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 436 FNECNLLGTGSFGSVYKGTISDWTN--VAIKIFNLQLERAFRSFDSECEVLRNVCHRNLI 493
F + +G GSFG V+KG I + T VAIKI +L+ + I
Sbjct: 9 FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAED-----------EIEDIQQEI 56
Query: 494 KILSSCSNPDFKALMWGRLLNISITIIRRHL 524
+LS C +P L + + II +L
Sbjct: 57 TVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 87
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 152 RGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSN 207
RGL+ + +L + P D L L TGN L+ P L +L +LR HLG+N
Sbjct: 18 RGLT--WASLPTAFPVDTTELVL------TGNNLTALPPGLLDALPALRTAHLGAN 65
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 246 VLRVLDLSRNQLS----GDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 301
++ LDLS N+++ GD+ A +L+ L L S++ ++ SL SLE LDLS
Sbjct: 53 AMKSLDLSFNKITYIGHGDLR---ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 109
Query: 302 NNLSGKIPKSLETLSHLKQFNASHN 326
N+LS LS LK N N
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306
L L L N+++ DI+ + L L+TLSL NQ +P + L L++L LS N++S
Sbjct: 131 LESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS- 186
Query: 307 KIPKSLETLSHLKQFNA 323
L L+ LK +
Sbjct: 187 ----DLRALAGLKNLDV 199
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 411 DHEDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF 466
D ED + + R +IQR E C +G G FG V++G N VAIK
Sbjct: 372 DEEDTYTMPSTRD---YEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPAMAVAIKTC 426
Query: 467 -NLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
N + F E +R H +++K++
Sbjct: 427 KNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G D T VA+K N R F +E V++ ++++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 495 ILSSCSN 501
+L S
Sbjct: 85 LLGVVSK 91
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G D T VA+K N R F +E V++ ++++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 495 ILSSCS 500
+L S
Sbjct: 85 LLGVVS 90
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 411 DHEDFLPLATWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF 466
D ED + + R +IQR E C +G G FG V++G N VAIK
Sbjct: 372 DEEDTYTMPSTRD---YEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPAMAVAIKTC 426
Query: 467 -NLQLERAFRSFDSECEVLRNVCHRNLIKIL 496
N + F E +R H +++K++
Sbjct: 427 KNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G D T VA+K N R F +E V++ ++++
Sbjct: 26 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 85
Query: 495 ILSSCS 500
+L S
Sbjct: 86 LLGVVS 91
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G D T VA+K N R F +E V++ ++++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 495 ILSSCSN 501
+L S
Sbjct: 85 LLGVVSK 91
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 246 VLRVLDLSRNQLS----GDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 301
++ LDLS N+++ GD+ A +L+ L L S++ ++ SL SLE LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLR---ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83
Query: 302 NNLSGKIPKSLETLSHLKQFNASHN 326
N+LS LS LK N N
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 431 RATDEFNECNLLGTGSFGSVYK 452
R T EF+E +G+G FGSV+K
Sbjct: 4 RYTTEFHELEKIGSGEFGSVFK 25
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G D T VA+K N R F +E V++ ++++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 495 ILSSCS 500
+L S
Sbjct: 85 LLGVVS 90
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G D T VA+K N R F +E V++ ++++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 495 ILSSCSN 501
+L S
Sbjct: 85 LLGVVSK 91
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 442 LGTGSFGSVYKGTISD------WTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIK 494
LG GSFG VY+G D T VA+K N R F +E V++ ++++
Sbjct: 22 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 81
Query: 495 ILSSCSN 501
+L S
Sbjct: 82 LLGVVSK 88
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 432 ATDEFNECNLLGTGSFGSVYKG-TISDWTNVAIKIFNLQLERAFRSFD-SECEVLRNVCH 489
++ +F + LG G++ +VYKG + VA+K L E S E +++ + H
Sbjct: 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH 62
Query: 490 RNLIKI 495
N++++
Sbjct: 63 ENIVRL 68
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 431 RATDEFNECNLLGTGSFGSVYK 452
R T EF+E +G+G FGSV+K
Sbjct: 8 RYTTEFHELEKIGSGEFGSVFK 29
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 431 RATDEFNECNLLGTGSFGSVYK 452
R T EF+E +G+G FGSV+K
Sbjct: 6 RYTTEFHELEKIGSGEFGSVFK 27
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 431 RATDEFNECNLLGTGSFGSVYK 452
R T EF+E +G+G FGSV+K
Sbjct: 6 RYTTEFHELEKIGSGEFGSVFK 27
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 109 FNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIP-- 166
C KG G T L L +N L +L QL LSL N ++ S+P
Sbjct: 12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDG 70
Query: 167 -YD-LCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLW 218
+D L L ++Y L NKL LT L+EL L +N+L S+P ++
Sbjct: 71 VFDKLTKLTILY---LHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIF 120
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 248 RVLDLSRNQLSGDISTIGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSG 306
+++ L N S + IG L L+ L++A N Q +PE +L +LE LDLS N +
Sbjct: 106 KLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Query: 307 KIPKSLETLSHL 318
L L +
Sbjct: 166 IYCTDLRVLHQM 177
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+VLDLSR ++ + +L L TL L N Q + L SL+ L NL+
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 306 GKIPKSLETLSHLKQFNASHNRLEG 330
+ L LK+ N +HN ++
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQS 140
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 33 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 91
Query: 494 KILSSCSN 501
++L S
Sbjct: 92 RLLGVVSQ 99
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 33 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 91
Query: 494 KILSSCSN 501
++L S
Sbjct: 92 RLLGVVSQ 99
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 441 LLGTGSFGSVYKGTIS----DWTNVAIKIF--NLQLERAFRSFDSECEVLRNVCHRNLIK 494
+LG G FG VY+G + + NVA+K + L+ F SE +++N+ H +++K
Sbjct: 19 ILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNK-EKFMSEAVIMKNLDHPHIVK 77
Query: 495 IL 496
++
Sbjct: 78 LI 79
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 441 LLGTGSFGSVYKGTIS----DWTNVAIKIF--NLQLERAFRSFDSECEVLRNVCHRNLIK 494
+LG G FG VY+G + + NVA+K + L+ F SE +++N+ H +++K
Sbjct: 31 ILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNK-EKFMSEAVIMKNLDHPHIVK 89
Query: 495 IL 496
++
Sbjct: 90 LI 91
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 18 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 76
Query: 494 KILSSCSN 501
++L S
Sbjct: 77 RLLGVVSQ 84
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 84/215 (39%), Gaps = 37/215 (17%)
Query: 120 EIGNLRGL---TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
E+G GL L LF+N L + L +LR L L+ N +E Y + +
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 177 GIRLTGNKLSGHI-PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXX 235
+ L K +I L +LR L+LG L IP+
Sbjct: 135 RLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIPN-------------------- 173
Query: 236 XXXXXXQTLKVLRVLDLSRNQLSGDISTIGA---LVDLETLSLASNQFQGPIPESVGSLI 292
L L L+LS N+L D+ G+ L L L L Q + L
Sbjct: 174 -----LTALVRLEELELSGNRL--DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 293 SLESLDLSGNNLSGKIPKSLET-LSHLKQFNASHN 326
SLE L+LS NNL +P L T L L++ + +HN
Sbjct: 227 SLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
E + +LG+G FG+V+KG I + ++ I + +E ++F++ + ++
Sbjct: 14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLD 73
Query: 489 HRNLIKILSSC 499
H +++++L C
Sbjct: 74 HAHIVRLLGLC 84
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 26 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 84
Query: 494 KILSSCSN 501
++L S
Sbjct: 85 RLLGVVSQ 92
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 20 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 78
Query: 494 KILSSCSN 501
++L S
Sbjct: 79 RLLGVVSQ 86
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 441 LLGTGSFGSVYKGTIS----DWTNVAIKIF--NLQLERAFRSFDSECEVLRNVCHRNLIK 494
+LG G FG VY+G + + NVA+K + L+ F SE +++N+ H +++K
Sbjct: 15 ILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNK-EKFMSEAVIMKNLDHPHIVK 73
Query: 495 IL 496
++
Sbjct: 74 LI 75
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 55 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 113
Query: 494 KILSSCSN 501
++L S
Sbjct: 114 RLLGVVSQ 121
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 20 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 78
Query: 494 KILSSCSN 501
++L S
Sbjct: 79 RLLGVVSQ 86
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 23 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 81
Query: 494 KILSSCSN 501
++L S
Sbjct: 82 RLLGVVSQ 89
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 26 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 84
Query: 494 KILSSCSN 501
++L S
Sbjct: 85 RLLGVVSQ 92
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 27 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 85
Query: 494 KILSSCSN 501
++L S
Sbjct: 86 RLLGVVSQ 93
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 24 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 82
Query: 494 KILSSCSN 501
++L S
Sbjct: 83 RLLGVVSQ 90
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 442 LGTGSFGSVY----KGTISD--WTNVAIKIFNLQLERAFR-SFDSECEVLRNV-CHRNLI 493
LG GSFG VY KG + D T VAIK N R F +E V++ CH +++
Sbjct: 27 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH-HVV 85
Query: 494 KILSSCSN 501
++L S
Sbjct: 86 RLLGVVSQ 93
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 435 EFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVC 488
E + +LG+G FG+V+KG I + ++ I + +E ++F++ + ++
Sbjct: 32 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLD 91
Query: 489 HRNLIKILSSC 499
H +++++L C
Sbjct: 92 HAHIVRLLGLC 102
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECE 482
T Y +R +F E L+G+G FG V+K D I+ E+A R E +
Sbjct: 2 TKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRVKYNNEKAER----EVK 57
Query: 483 VLRNVCHRNLI 493
L + H N++
Sbjct: 58 ALAKLDHVNIV 68
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 243 TLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
TL VL LDLS NQL L L L ++ N+ ++ L L+ L L GN
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 303 NLSGKIPKSLETLSHLKQFNASHNRL 328
L P L L++ + ++N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 15/167 (8%)
Query: 168 DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT---SSIPSSLWSLEYXX 224
D +LK ++ + L NK+S P A L L L+L N+L +P +L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV-- 128
Query: 225 XXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLS---LASNQFQ 281
L + V++L N L GA ++ LS +A
Sbjct: 129 ----HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 282 GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
IP+ G SL L L GN ++ SL+ L++L + S N +
Sbjct: 185 T-IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 15/167 (8%)
Query: 168 DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT---SSIPSSLWSLEYXX 224
D +LK ++ + L NK+S P A L L L+L N+L +P +L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV-- 128
Query: 225 XXXXXXXXXXXXXXXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLS---LASNQFQ 281
L + V++L N L GA ++ LS +A
Sbjct: 129 ----HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 282 GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRL 328
IP+ G SL L L GN ++ SL+ L++L + S N +
Sbjct: 185 T-IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 431 RATDEFNECNLLGTGSFGSVYKGT-ISDWTNVAIKIFNLQ 469
R ++F +G+GSFG +Y GT I VAIK+ N++
Sbjct: 4 RVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVK 43
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 243 TLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
TL VL LDLS NQL L L L ++ N+ ++ L L+ L L GN
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 303 NLSGKIPKSLETLSHLKQFNASHNRL 328
L P L L++ + ++N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 31/185 (16%)
Query: 130 LSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE--GSIPYDLCHLKLMYGIRLTGNKLSG 187
L NN L T+ G L +L L L+ N L+ I +K + + ++ N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 188 HIPPCLASLT-SLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKV 246
S T SL L++ SN LT +I L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--------------------------PPR 422
Query: 247 LRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLS 305
++VLDL N++ + L L+ L++ASNQ + +P+ + L SL+ + L N
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 481
Query: 306 GKIPK 310
P+
Sbjct: 482 CSCPR 486
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 243 TLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
TL VL LDLS NQL L L L ++ N+ ++ L L+ L L GN
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 303 NLSGKIPKSLETLSHLKQFNASHNRL 328
L P L L++ + ++N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+VLDLSR ++ + +L L TL L N Q + L SL+ L NL+
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 306 GKIPKSLETLSHLKQFNASHNRLEG 330
+ L LK+ N +HN ++
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQS 139
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 264 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
IG L L+ L++A N Q +PE +L +LE LDLS N + L L +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 442 LGTGSFGSVYKGTISDWTN------VAIKIF-NLQLERAFRSFDSECEVLRNVCHRNLIK 494
LG G+FG VY+G +S N VA+K + E+ F E ++ + H+N+++
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVR 112
Query: 495 IL 496
+
Sbjct: 113 CI 114
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 243 TLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
TL VL LDLS NQL L L L ++ N+ ++ L L+ L L GN
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 303 NLSGKIPKSLETLSHLKQFNASHNRL 328
L P L L++ + ++N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 442 LGTGSFGSVYKGTISDWTN------VAIKIF-NLQLERAFRSFDSECEVLRNVCHRNLIK 494
LG G+FG VY+G +S N VA+K + E+ F E ++ H+N+++
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEALIISKFNHQNIVR 112
Query: 495 IL 496
+
Sbjct: 113 CI 114
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFD 478
T +IQR E C +G G FG V++G N VAIK N + F
Sbjct: 7 TRDYEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFL 64
Query: 479 SECEVLRNVCHRNLIKIL 496
E +R H +++K++
Sbjct: 65 QEALTMRQFDHPHIVKLI 82
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 442 LGTGSFGSVYKGTISDWTN------VAIKIF-NLQLERAFRSFDSECEVLRNVCHRNLIK 494
LG G+FG VY+G +S N VA+K + E+ F E ++ + H+N+++
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVR 98
Query: 495 IL 496
+
Sbjct: 99 CI 100
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+VLDLSR ++ + +L L TL L N Q + L SL+ L NL+
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 306 GKIPKSLETLSHLKQFNASHNRLEG 330
+ L LK+ N +HN ++
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQS 140
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 264 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
IG L L+ L++A N Q +PE +L +LE LDLS N + L L +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 428 DIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFDSECE 482
+IQR E C +G G FG V++G N VAIK N + F E
Sbjct: 34 EIQRERIELGRC--IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEAL 91
Query: 483 VLRNVCHRNLIKIL 496
+R H +++K++
Sbjct: 92 TMRQFDHPHIVKLI 105
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLR 485
+++++R +E LG+G FG V G +VA+K+ + + F E + +
Sbjct: 2 HMELKR--EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMM 58
Query: 486 NVCHRNLIKILSSCSN 501
+ H L+K CS
Sbjct: 59 KLSHPKLVKFYGVCSK 74
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+VLDLSR ++ + +L L TL L N Q + L SL+ L NL+
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 306 GKIPKSLETLSHLKQFNASHNRLEG 330
+ L LK+ N +HN ++
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQS 138
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 264 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
IG L L+ L++A N Q +PE +L +LE LDLS N + L L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|B Chain B, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|C Chain C, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|D Chain D, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
Length = 371
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 23/91 (25%)
Query: 79 KALSLGSNPLGGILPPVIG---NFSASFQNFYAFNCKLKGNIPQE--------------- 120
K L L NP+ PV G A N AF KLK ++P E
Sbjct: 253 KILGLSDNPI-----PVDGLCVRIGALRCNSQAFTIKLKKDLPLEEIEQIIASHNEWVKV 307
Query: 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQL 151
I N + +TL L + GT+S +GRL++L
Sbjct: 308 IPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFD 478
T +IQR E C +G G FG V++G N VAIK N + F
Sbjct: 5 TRDYEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFL 62
Query: 479 SECEVLRNVCHRNLIKIL 496
E +R H +++K++
Sbjct: 63 QEALTMRQFDHPHIVKLI 80
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFD 478
T +IQR E C +G G FG V++G N VAIK N + F
Sbjct: 4 TRDYEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFL 61
Query: 479 SECEVLRNVCHRNLIKIL 496
E +R H +++K++
Sbjct: 62 QEALTMRQFDHPHIVKLI 79
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFD 478
T +IQR E C +G G FG V++G N VAIK N + F
Sbjct: 2 TRDYEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFL 59
Query: 479 SECEVLRNVCHRNLIKIL 496
E +R H +++K++
Sbjct: 60 QEALTMRQFDHPHIVKLI 77
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFD 478
T +IQR E C +G G FG V++G N VAIK N + F
Sbjct: 2 TRDYEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFL 59
Query: 479 SECEVLRNVCHRNLIKIL 496
E +R H +++K++
Sbjct: 60 QEALTMRQFDHPHIVKLI 77
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFD 478
T +IQR E C +G G FG V++G N VAIK N + F
Sbjct: 2 TRDYEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFL 59
Query: 479 SECEVLRNVCHRNLIKIL 496
E +R H +++K++
Sbjct: 60 QEALTMRQFDHPHIVKLI 77
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 58 LLGSGGFGSVYSGIRVSDNLPVAIK 82
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 247 LRVLDLSRNQLSG-DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305
L+VLDLSR ++ + +L L TL L N Q + L SL+ L NL+
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 306 GKIPKSLETLSHLKQFNASHNRLEG 330
+ L LK+ N +HN ++
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQS 139
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 264 IGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318
IG L L+ L++A N Q +PE +L +LE LDLS N + L L +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 63 LLGSGGFGSVYSGIRVSDNLPVAIK 87
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 43 LLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFD 478
T +IQR E C +G G FG V++G N VAIK N + F
Sbjct: 2 TRDYEIQRERIELGRC--IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFL 59
Query: 479 SECEVLRNVCHRNLIKIL 496
E +R H +++K++
Sbjct: 60 QEALTMRQFDHPHIVKLI 77
>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261
pdb|2BZI|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru2
Length = 313
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 43 LLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 44 LLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 58 LLGSGGFGSVYSGIRVSDNLPVAIK 82
>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Naphtho-Difuran Ligand
Length = 313
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 44 LLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 428 DIQRATDEFNECNLLGTGSFGSVYKGTISDWTN----VAIKIF-NLQLERAFRSFDSECE 482
+IQR E C +G G FG V++G N VAIK N + F E
Sbjct: 3 EIQRERIELGRC--IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEAL 60
Query: 483 VLRNVCHRNLIKIL 496
+R H +++K++
Sbjct: 61 TMRQFDHPHIVKLI 74
>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With
Ly333531
Length = 312
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 43 LLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its
Consensus Peptide Pimtide
pdb|2BZJ|A Chain A, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru3
pdb|2BZK|B Chain B, Crystal Structure Of The Human Pim1 In Complex With Amppnp
And Pimtide
pdb|2C3I|B Chain B, Crystal Structure Of Human Pim1 In Complex With
Imidazopyridazin I
pdb|2BZH|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2OI4|X Chain X, Crystal Structure Of Human Pim1 In Complex With
Fluorinated Ruthenium Pyridocarbazole
pdb|3BWF|A Chain A, Crystal Structure Of The Human Pim1 In Complex With An
Osmium Compound
Length = 313
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 43 LLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And
The Jnk Inhibitor V
Length = 314
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 44 LLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand I
pdb|3CY2|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand Ii
Length = 314
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 44 LLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 30 LLGSGGFGSVYSGIRVSDNLPVAIK 54
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 30 LLGSGGFGSVYSGIRVSDNLPVAIK 54
>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546
Length = 308
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 38 LLGSGGFGSVYSGIRVSDNLPVAIK 62
>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R01|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R02|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R04|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3VBQ|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBT|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBV|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBW|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBX|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBY|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VC4|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
Length = 299
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 16 LLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 31 LLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 31 LLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 50 LLGSGGFGSVYSGIRVSDNLPVAIK 74
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 31 LLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target
Of Aberrant Somatic Hypermutations In Diffuse Large Cell
Lymphoma
pdb|1YXT|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amppnp
pdb|1YXU|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|B Chain B, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|C Chain C, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|D Chain D, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXV|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
3,4-Dihydroxy-1- Methylquinolin-2(1h)-One
pdb|1YXX|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
(3e)-3-[(4- Hydroxyphenyl)imino]-1h-Indol-2(3h)-One
pdb|2O3P|A Chain A, Crystal Structure Of Pim1 With Quercetin
pdb|2O63|A Chain A, Crystal Structure Of Pim1 With Myricetin
pdb|2O64|A Chain A, Crystal Structure Of Pim1 With Quercetagetin
pdb|2O65|A Chain A, Crystal Structure Of Pim1 With Pentahydroxyflavone
Length = 293
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 15 LLGSGGFGSVYSGIRVSDNLPVAIK 39
>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small
Molecule Inhibitor
pdb|3UMX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indol-3-Yl)methylene]-7-(Azepan-1-Ylmethyl)-6-
Hydroxybenzofuran- 3(2h)-One
pdb|4ENX|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
Inhibitor (2e,5z)-2-
(2-Chlorophenylimino)-5-(4-Hydroxy-3-
Nitrobenzylidene)thiazolidin-4- One
pdb|4ENY|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
(2e,5z)-2-(2-
Chlorophenylimino)-5-(4-Hydroxy-3-
Methoxybenzylidene)thiazolidin-4- One
pdb|3UMW|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indazol-3-Yl)methylene]-6-Methoxy-7-(Piperazin-1-
Ylmethyl)benzofuran- 3(2h)-One
Length = 298
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 16 LLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JY0|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JYA|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
Length = 294
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 16 LLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 15 LLGSGGFGSVYSGIRVSDNLPVAIK 39
>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|B Chain B, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|C Chain C, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|D Chain D, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
Length = 273
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 86/235 (36%), Gaps = 77/235 (32%)
Query: 120 EIGNLRGL---TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176
E+G GL L LF+N L + L +LR L L+ N +E SIP Y
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPS--------Y 125
Query: 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXX 236
+P SLR L LG K LEY
Sbjct: 126 AF--------NRVP-------SLRRLDLGELK----------RLEYISEAAF-------- 152
Query: 237 XXXXXQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQ--------FQGPIP--- 285
+ L LR L+L L DI + ALV LE L L+ N+ FQG
Sbjct: 153 -----EGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 286 -------------ESVGSLISLESLDLSGNNLSGKIPKSLET-LSHLKQFNASHN 326
+ L SLE L+LS NNL +P L T L L++ + +HN
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor
Length = 276
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 14 LLGSGGFGSVYSGIRVSDNLPVAIK 38
>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors
Length = 273
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 441 LLGTGSFGSVYKGT-ISDWTNVAIK 464
LLG+G FGSVY G +SD VAIK
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLR 248
+PP L T++ LHL N L + ++L + Y TL VL
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATL--MPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 249 VLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
LDLS NQL L L L ++ N+ ++ L L+ L L GN L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 309 PKSLETLSHLKQFNASHNRL 328
P L L++ + ++N L
Sbjct: 141 PGLLTPTPKLEKLSLANNNL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%)
Query: 243 TLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
TL VL LDLS NQL L L L ++ N+ ++ L L+ L L GN
Sbjct: 76 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 303 NLSGKIPKSLETLSHLKQFNASHNRL 328
L P L L++ + ++N L
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNL 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%)
Query: 243 TLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
TL VL LDLS NQL L L L ++ N+ ++ L L+ L L GN
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 303 NLSGKIPKSLETLSHLKQFNASHNRL 328
L P L L++ + ++N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDS----ECEVLRNVCH 489
+ F + +G G++G VYK + T + + ++L+ S E +L+ + H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKAR-NKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNH 61
Query: 490 RNLIKILS 497
N++K+L
Sbjct: 62 PNIVKLLD 69
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDS----ECEVLRNVCH 489
+ F + +G G++G VYK + T + + ++L+ S E +L+ + H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKAR-NKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 490 RNLIKILS 497
N++K+L
Sbjct: 61 PNIVKLLD 68
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLR 248
+PP L T++ LHL N L + ++L + Y TL VL
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATL--MPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 249 VLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
LDLS NQL L L L ++ N+ ++ L L+ L L GN L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 309 PKSLETLSHLKQFNASHNRL 328
P L L++ + ++N L
Sbjct: 141 PGLLTPTPKLEKLSLANNNL 160
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 39/148 (26%)
Query: 78 LKALSLGSNPLG---------GILPPV--IGNFSASFQNFYAFNCKLKGNIPQEIGNLRG 126
L+ L L NPLG G+L P + + A +C+ ++ + R
Sbjct: 111 LRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASV---LRATRA 167
Query: 127 LTLLSLFNNDLNGTISPTMGR-----LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181
L L++ NND+ + +G+ QL L L+ L + DLC GI
Sbjct: 168 LKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLC------GI--- 218
Query: 182 GNKLSGHIPPCLASLTSLRELHLGSNKL 209
+AS SLREL LGSN L
Sbjct: 219 -----------VASQASLRELDLGSNGL 235
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Query: 189 IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLR 248
+PP L T++ LHL N L + ++L + Y TL VL
Sbjct: 25 LPPDLPKDTTI--LHLSENLLYTFSLATL--MPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 249 VLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308
LDLS NQL L L L ++ N+ ++ L L+ L L GN L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 309 PKSLETLSHLKQFNASHNRL 328
P L L++ + ++N L
Sbjct: 141 PGLLTPTPKLEKLSLANNNL 160
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 27/126 (21%)
Query: 196 LTSLRELHLGSNKLTSSIPSSLWSLEYXXXXXXXXXXXXXXXXXXXQTLKVLRVLDLSRN 255
LTSL +L+LG NKL S+P+ +++ L L L+LS N
Sbjct: 51 LTSLTQLYLGGNKL-QSLPNGVFN-----------------------KLTSLTYLNLSTN 86
Query: 256 QLSGDISTI-GALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNLSGKIPKSLE 313
QL + + L L+ L+L +NQ Q +P+ V L L+ L L N L +
Sbjct: 87 QLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145
Query: 314 TLSHLK 319
L+ L+
Sbjct: 146 RLTSLQ 151
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%)
Query: 243 TLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302
TL VL LDLS NQL L L L ++ N+ ++ L L+ L L GN
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 303 NLSGKIPKSLETLSHLKQFNASHNRL 328
L P L L++ + ++N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE------RAFRSFDSE 480
L Q +++ + +G G++G VYK S VA+K L E A R E
Sbjct: 14 LYFQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIR----E 69
Query: 481 CEVLRNVCHRNLIKILS 497
+L+ + H N++ ++
Sbjct: 70 ISLLKELHHPNIVSLID 86
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE------RAFRSFDSE 480
L Q +++ + +G G++G VYK S VA+K L E A R E
Sbjct: 14 LYFQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIR----E 69
Query: 481 CEVLRNVCHRNLIKILS 497
+L+ + H N++ ++
Sbjct: 70 ISLLKELHHPNIVSLID 86
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 442 LGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC 499
+G+G FG V+ G + VAIK + + F E EV+ + H L+++ C
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVC 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,990,351
Number of Sequences: 62578
Number of extensions: 515316
Number of successful extensions: 2017
Number of sequences better than 100.0: 371
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 291
Number of HSP's that attempted gapping in prelim test: 1547
Number of HSP's gapped (non-prelim): 548
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)