Query 040301
Match_columns 524
No_of_seqs 414 out of 4339
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:06:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-43 4.4E-48 386.2 29.4 343 19-367 317-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 4E-40 1.4E-44 358.7 26.5 326 20-352 294-717 (768)
3 2id5_A Lingo-1, leucine rich r 100.0 7.7E-40 2.6E-44 337.9 25.2 333 15-356 27-360 (477)
4 3v47_A TOLL-like receptor 5B a 100.0 1.4E-39 4.8E-44 334.0 24.3 333 14-356 25-412 (455)
5 3vq2_A TLR4, TOLL-like recepto 100.0 4E-37 1.4E-41 327.3 30.5 165 192-356 394-562 (606)
6 3v47_A TOLL-like receptor 5B a 100.0 5.1E-37 1.7E-41 315.0 25.6 317 22-351 12-383 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 2.1E-36 7.1E-41 312.2 26.6 323 21-355 12-336 (477)
8 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-36 8.1E-41 318.1 27.5 323 14-354 46-512 (562)
9 4eco_A Uncharacterized protein 100.0 8E-37 2.7E-41 325.4 24.1 320 18-353 247-601 (636)
10 3t6q_A CD180 antigen; protein- 100.0 4.9E-36 1.7E-40 318.9 30.1 308 14-331 27-391 (606)
11 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-36 9.4E-41 314.8 27.2 137 20-171 21-162 (520)
12 3t6q_A CD180 antigen; protein- 100.0 3.7E-36 1.3E-40 319.8 28.1 303 21-334 255-565 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 8.7E-36 3E-40 314.7 28.9 140 15-163 23-163 (570)
14 4eco_A Uncharacterized protein 100.0 2E-36 6.9E-41 322.2 24.1 319 18-351 204-578 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-36 1.9E-40 314.8 25.6 319 19-350 25-484 (549)
16 3j0a_A TOLL-like receptor 5; m 100.0 5.5E-36 1.9E-40 329.4 26.8 233 19-258 72-375 (844)
17 3o6n_A APL1; leucine-rich repe 100.0 1.5E-35 5E-40 297.7 26.8 295 17-331 42-354 (390)
18 1ziw_A TOLL-like receptor 3; i 100.0 5.5E-35 1.9E-39 315.0 31.1 336 20-356 248-626 (680)
19 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-35 1.5E-39 311.7 29.3 191 142-334 369-563 (606)
20 3oja_B Anopheles plasmodium-re 100.0 3.1E-35 1.1E-39 311.3 27.2 318 17-355 48-383 (597)
21 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-35 1.6E-39 322.1 28.0 307 14-330 19-376 (844)
22 4ecn_A Leucine-rich repeat pro 100.0 3.2E-35 1.1E-39 318.6 24.9 321 19-350 322-787 (876)
23 4ecn_A Leucine-rich repeat pro 100.0 6.7E-35 2.3E-39 316.1 27.4 318 18-351 446-818 (876)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-34 3.8E-39 302.7 27.2 318 18-355 43-484 (520)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-34 6.4E-39 303.6 26.8 298 18-334 74-515 (562)
26 4g8a_A TOLL-like receptor 4; l 100.0 7.6E-34 2.6E-38 303.6 31.9 332 15-355 47-583 (635)
27 2z63_A TOLL-like receptor 4, v 100.0 2.2E-34 7.4E-39 304.0 26.2 187 170-357 344-536 (570)
28 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-34 2.3E-38 306.6 29.1 305 14-327 19-364 (680)
29 4fmz_A Internalin; leucine ric 100.0 2.8E-33 9.5E-38 276.6 30.1 303 18-350 42-344 (347)
30 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-34 6.6E-39 280.1 21.2 253 103-357 52-309 (313)
31 4fmz_A Internalin; leucine ric 100.0 3.3E-33 1.1E-37 276.1 28.7 283 18-329 64-346 (347)
32 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-34 1.3E-38 300.7 23.1 320 19-356 49-514 (549)
33 1xku_A Decorin; proteoglycan, 100.0 3.8E-33 1.3E-37 273.6 28.1 290 20-327 31-330 (330)
34 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-34 4.4E-39 281.4 17.1 252 76-330 50-305 (313)
35 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-33 1E-37 274.5 25.4 288 21-327 34-331 (332)
36 1o6v_A Internalin A; bacterial 100.0 1.9E-32 6.4E-37 281.5 31.1 298 18-349 66-363 (466)
37 1xku_A Decorin; proteoglycan, 100.0 6.5E-32 2.2E-36 264.8 27.1 273 15-303 47-330 (330)
38 3o6n_A APL1; leucine-rich repe 100.0 1.7E-32 5.9E-37 275.3 23.1 292 42-353 43-353 (390)
39 1o6v_A Internalin A; bacterial 100.0 9.4E-32 3.2E-36 276.3 27.7 298 19-350 45-342 (466)
40 2ft3_A Biglycan; proteoglycan, 100.0 5.7E-32 2E-36 265.4 24.7 272 15-303 49-331 (332)
41 4g8a_A TOLL-like receptor 4; l 100.0 1E-31 3.4E-36 287.2 28.7 307 19-334 75-585 (635)
42 3oja_B Anopheles plasmodium-re 100.0 8.4E-32 2.9E-36 285.0 24.3 293 42-354 49-360 (597)
43 3bz5_A Internalin-J, INLJ; leu 100.0 8.1E-31 2.8E-35 267.5 29.1 295 18-350 40-350 (457)
44 3bz5_A Internalin-J, INLJ; leu 100.0 6E-30 2.1E-34 261.0 29.9 275 18-330 62-353 (457)
45 2z66_A Variable lymphocyte rec 100.0 2.4E-30 8.4E-35 250.8 19.6 277 22-334 9-292 (306)
46 2z80_A TOLL-like receptor 2, v 100.0 1.7E-30 5.8E-35 257.1 17.5 280 21-333 32-318 (353)
47 2z80_A TOLL-like receptor 2, v 100.0 9.4E-31 3.2E-35 259.0 14.5 275 78-356 33-318 (353)
48 2z66_A Variable lymphocyte rec 100.0 4.7E-30 1.6E-34 248.8 18.0 232 102-334 29-266 (306)
49 4fcg_A Uncharacterized protein 100.0 2.8E-29 9.7E-34 245.2 21.6 226 19-258 80-314 (328)
50 3zyi_A Leucine-rich repeat-con 100.0 7.4E-29 2.5E-33 253.7 25.3 249 79-333 57-307 (452)
51 1ozn_A Reticulon 4 receptor; N 100.0 9.2E-30 3.1E-34 244.1 17.3 226 21-258 12-238 (285)
52 1jl5_A Outer protein YOPM; leu 100.0 2.4E-28 8.1E-33 249.0 28.2 261 20-330 91-371 (454)
53 3zyj_A Leucine-rich repeat-con 100.0 7.3E-29 2.5E-33 252.8 24.5 230 102-333 65-296 (440)
54 3zyi_A Leucine-rich repeat-con 100.0 1.6E-28 5.4E-33 251.2 25.0 228 76-306 75-304 (452)
55 3zyj_A Leucine-rich repeat-con 100.0 1.7E-28 5.9E-33 250.0 25.2 247 21-305 44-292 (440)
56 1ozn_A Reticulon 4 receptor; N 100.0 4.5E-29 1.5E-33 239.3 18.8 227 79-333 14-242 (285)
57 1jl5_A Outer protein YOPM; leu 100.0 2.4E-27 8.2E-32 241.6 30.8 284 21-353 72-371 (454)
58 4fcg_A Uncharacterized protein 100.0 3E-28 1E-32 238.0 21.5 232 76-328 81-313 (328)
59 3g06_A SSPH2 (leucine-rich rep 100.0 5.7E-27 1.9E-31 246.1 29.8 262 20-333 40-301 (622)
60 1wwl_A Monocyte differentiatio 100.0 8.9E-30 3.1E-34 247.3 7.6 247 73-330 40-310 (312)
61 1wwl_A Monocyte differentiatio 100.0 1E-29 3.5E-34 246.9 7.3 250 39-306 38-310 (312)
62 3o53_A Protein LRIM1, AGAP0063 100.0 5.2E-30 1.8E-34 249.5 4.4 266 21-332 11-279 (317)
63 1z7x_W Ribonuclease inhibitor; 100.0 7.7E-31 2.6E-35 269.4 -2.3 308 20-331 3-356 (461)
64 3o53_A Protein LRIM1, AGAP0063 100.0 1.3E-29 4.5E-34 246.7 6.4 241 77-331 11-252 (317)
65 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-30 9.9E-35 265.1 1.4 303 20-330 28-384 (461)
66 3oja_A Leucine-rich immune mol 100.0 1.1E-28 3.9E-33 253.8 11.0 233 77-323 35-269 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 7.4E-26 2.5E-30 237.6 26.4 255 13-316 54-308 (622)
68 3oja_A Leucine-rich immune mol 99.9 5.5E-28 1.9E-32 248.7 8.4 234 45-300 35-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 8.7E-26 3E-30 215.3 20.9 208 126-334 29-242 (276)
70 2z62_A TOLL-like receptor 4, v 99.9 1.3E-25 4.4E-30 214.1 19.7 207 102-308 29-240 (276)
71 2o6q_A Variable lymphocyte rec 99.9 1.1E-24 3.9E-29 206.7 22.2 203 20-258 16-218 (270)
72 2o6q_A Variable lymphocyte rec 99.9 2.3E-24 7.8E-29 204.7 23.7 204 127-333 18-222 (270)
73 3rfs_A Internalin B, repeat mo 99.9 9E-26 3.1E-30 214.6 13.2 138 120-257 80-217 (272)
74 1p9a_G Platelet glycoprotein I 99.9 2.7E-24 9.2E-29 206.0 22.1 205 121-332 6-211 (290)
75 3rfs_A Internalin B, repeat mo 99.9 3.9E-25 1.3E-29 210.2 14.8 224 21-266 20-244 (272)
76 1p9a_G Platelet glycoprotein I 99.9 5.2E-24 1.8E-28 204.0 20.4 154 102-258 32-185 (290)
77 3goz_A Leucine-rich repeat-con 99.9 2E-25 7E-30 221.3 4.6 254 24-282 2-298 (362)
78 2ast_B S-phase kinase-associat 99.9 3.9E-25 1.3E-29 217.1 6.5 256 20-313 47-314 (336)
79 2xwt_C Thyrotropin receptor; s 99.9 1.1E-23 3.8E-28 196.1 15.4 196 45-255 32-236 (239)
80 3goz_A Leucine-rich repeat-con 99.9 3.6E-25 1.2E-29 219.5 4.9 115 72-186 18-151 (362)
81 2ca6_A RAN GTPase-activating p 99.9 2.1E-25 7.1E-30 223.4 1.9 265 22-309 11-320 (386)
82 4glp_A Monocyte differentiatio 99.9 2E-23 6.7E-28 202.4 15.7 223 77-305 65-307 (310)
83 2xwt_C Thyrotropin receptor; s 99.9 2.9E-23 9.8E-28 193.3 15.7 195 77-302 32-236 (239)
84 1h6u_A Internalin H; cell adhe 99.9 1.3E-23 4.6E-28 203.1 13.6 211 21-281 20-230 (308)
85 2ast_B S-phase kinase-associat 99.9 7.7E-25 2.6E-29 215.0 4.6 250 76-334 47-311 (336)
86 2ca6_A RAN GTPase-activating p 99.9 8.9E-25 3E-29 218.8 4.2 239 93-332 25-319 (386)
87 3m19_A Variable lymphocyte rec 99.9 1.6E-22 5.6E-27 189.6 19.4 179 20-210 14-192 (251)
88 4glp_A Monocyte differentiatio 99.9 4.9E-23 1.7E-27 199.6 13.8 227 45-282 65-308 (310)
89 3m19_A Variable lymphocyte rec 99.9 5.4E-22 1.8E-26 186.1 19.7 180 126-331 15-194 (251)
90 1h6u_A Internalin H; cell adhe 99.9 2.6E-22 9E-27 194.0 17.7 192 124-330 40-231 (308)
91 4ay9_X Follicle-stimulating ho 99.9 4.3E-22 1.5E-26 196.3 19.2 200 23-235 12-216 (350)
92 3ogk_B Coronatine-insensitive 99.9 1.7E-24 5.8E-29 229.3 0.6 323 21-350 139-524 (592)
93 3ogk_B Coronatine-insensitive 99.9 7.5E-24 2.6E-28 224.3 0.5 306 20-331 164-528 (592)
94 2o6s_A Variable lymphocyte rec 99.9 8.3E-21 2.8E-25 172.6 16.0 162 125-292 28-189 (208)
95 4ay9_X Follicle-stimulating ho 99.9 1.5E-20 5E-25 185.3 18.0 221 76-326 30-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 7.9E-21 2.7E-25 172.8 14.0 178 23-219 10-187 (208)
97 3cvr_A Invasion plasmid antige 99.8 2.8E-20 9.6E-25 193.0 16.6 184 77-288 60-250 (571)
98 1m9s_A Internalin B; cell inva 99.8 1.1E-20 3.7E-25 198.2 12.6 192 20-236 21-212 (605)
99 2p1m_B Transport inhibitor res 99.8 3.5E-22 1.2E-26 211.6 -0.2 129 20-156 105-242 (594)
100 1h6t_A Internalin B; cell adhe 99.8 7.3E-21 2.5E-25 182.2 8.9 191 21-260 25-215 (291)
101 3cvr_A Invasion plasmid antige 99.8 1.8E-19 6.2E-24 186.9 19.2 188 102-316 60-254 (571)
102 2p1m_B Transport inhibitor res 99.8 6.3E-22 2.2E-26 209.6 -0.1 324 19-349 129-516 (594)
103 2v9t_B SLIT homolog 2 protein 99.8 2.3E-19 8E-24 164.3 15.3 151 23-185 14-164 (220)
104 1h6t_A Internalin B; cell adhe 99.8 4.3E-20 1.5E-24 176.9 10.9 168 102-282 47-214 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-19 8.6E-24 164.1 15.0 153 23-186 14-166 (220)
106 1m9s_A Internalin B; cell inva 99.8 7.4E-20 2.5E-24 191.9 12.7 194 43-261 20-213 (605)
107 2v9t_B SLIT homolog 2 protein 99.8 4.4E-19 1.5E-23 162.4 16.3 154 177-333 15-169 (220)
108 2xot_A Amphoterin-induced prot 99.8 1.2E-19 4.1E-24 179.5 13.0 180 22-234 20-202 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-19 4.1E-24 166.2 11.9 155 177-334 15-171 (220)
110 2xot_A Amphoterin-induced prot 99.8 2.4E-19 8E-24 177.4 14.8 179 128-332 21-205 (361)
111 4ezg_A Putative uncharacterize 99.8 2.6E-19 9E-24 161.1 10.7 154 40-210 40-194 (197)
112 3e6j_A Variable lymphocyte rec 99.8 2.7E-18 9.2E-23 158.3 17.3 136 197-333 40-176 (229)
113 3e6j_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 156.7 17.6 136 173-308 40-175 (229)
114 1xeu_A Internalin C; cellular 99.8 5.2E-19 1.8E-23 166.7 8.7 168 19-210 18-185 (263)
115 4ezg_A Putative uncharacterize 99.8 2.8E-18 9.6E-23 154.4 12.3 154 73-235 41-195 (197)
116 1dce_A Protein (RAB geranylger 99.8 7.7E-21 2.6E-25 198.2 -5.8 217 73-323 346-567 (567)
117 1xeu_A Internalin C; cellular 99.8 6.3E-19 2.2E-23 166.1 7.1 80 221-305 106-185 (263)
118 1dce_A Protein (RAB geranylger 99.8 9.6E-21 3.3E-25 197.4 -6.0 215 41-298 346-566 (567)
119 3sb4_A Hypothetical leucine ri 99.7 1.6E-18 5.3E-23 169.3 8.6 102 220-323 225-328 (329)
120 2ell_A Acidic leucine-rich nuc 99.7 2.2E-17 7.7E-22 144.4 13.4 135 17-162 21-160 (168)
121 4asz_A BDNF/NT-3 growth factor 99.7 6.5E-18 2.2E-22 161.2 9.9 90 434-523 13-108 (299)
122 4aoj_A High affinity nerve gro 99.7 1.1E-17 3.6E-22 162.0 9.8 90 434-523 41-136 (329)
123 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.5E-22 147.4 10.3 128 176-306 11-140 (192)
124 4b8c_D Glucose-repressible alc 99.7 2E-18 7E-23 185.5 3.5 197 18-231 171-369 (727)
125 4b8c_D Glucose-repressible alc 99.7 6.2E-18 2.1E-22 181.8 7.2 121 116-240 215-335 (727)
126 3sb4_A Hypothetical leucine ri 99.7 2.8E-17 9.5E-22 160.4 10.5 263 19-299 24-328 (329)
127 1w8a_A SLIT protein; signaling 99.7 1E-16 3.5E-21 143.4 13.1 130 23-163 11-140 (192)
128 2je0_A Acidic leucine-rich nuc 99.7 5.5E-17 1.9E-21 138.9 9.9 129 18-157 15-148 (149)
129 4gt4_A Tyrosine-protein kinase 99.7 3E-17 1E-21 157.3 8.6 89 435-523 27-122 (308)
130 4b9d_A Serine/threonine-protei 99.7 5.8E-17 2E-21 157.0 10.3 91 433-523 23-116 (350)
131 4fdw_A Leucine rich hypothetic 99.7 2.8E-15 9.7E-20 149.4 22.3 266 42-329 111-383 (401)
132 4fih_A Serine/threonine-protei 99.7 5.6E-17 1.9E-21 156.8 7.5 90 434-523 74-164 (346)
133 4aw0_A HPDK1, 3-phosphoinositi 99.7 7.4E-17 2.5E-21 153.6 8.2 90 434-523 32-125 (311)
134 2wfh_A SLIT homolog 2 protein 99.7 6.1E-16 2.1E-20 138.3 13.4 127 23-162 13-139 (193)
135 4fdw_A Leucine rich hypothetic 99.7 7.1E-15 2.4E-19 146.5 22.5 264 20-305 113-383 (401)
136 2ell_A Acidic leucine-rich nuc 99.7 3E-16 1E-20 137.2 10.8 131 149-305 24-160 (168)
137 4fie_A Serine/threonine-protei 99.6 1.4E-16 4.9E-21 157.9 7.8 91 433-523 150-241 (423)
138 2wfh_A SLIT homolog 2 protein 99.6 2.2E-15 7.4E-20 134.7 14.3 130 200-333 13-143 (193)
139 2o6r_A Variable lymphocyte rec 99.6 2E-15 6.8E-20 133.1 13.3 129 22-162 9-137 (177)
140 3omv_A RAF proto-oncogene seri 99.6 4.1E-16 1.4E-20 148.8 9.5 92 429-523 31-124 (307)
141 2je0_A Acidic leucine-rich nuc 99.6 8E-16 2.7E-20 131.6 9.4 36 264-299 109-147 (149)
142 3fpq_A Serine/threonine-protei 99.6 7.9E-16 2.7E-20 145.7 9.8 87 437-523 29-122 (290)
143 4g31_A Eukaryotic translation 99.6 1E-15 3.5E-20 146.2 10.0 90 434-523 5-108 (299)
144 2o6r_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 129.5 14.4 131 200-333 10-141 (177)
145 3hyh_A Carbon catabolite-derep 99.6 1.4E-15 4.7E-20 142.8 8.8 89 434-523 13-105 (275)
146 1a9n_A U2A', U2A'; complex (nu 99.6 3.4E-15 1.2E-19 131.5 9.8 130 18-162 17-153 (176)
147 4ase_A Vascular endothelial gr 99.6 1.5E-15 5.3E-20 148.1 8.3 98 426-523 56-162 (353)
148 3hmm_A TGF-beta receptor type- 99.6 1.9E-15 6.4E-20 145.0 8.8 88 434-523 3-94 (303)
149 4g3f_A NF-kappa-beta-inducing 99.6 1.2E-15 4.1E-20 147.1 6.5 87 432-523 56-143 (336)
150 3ubd_A Ribosomal protein S6 ki 99.6 3.9E-16 1.3E-20 148.6 2.6 90 434-523 24-119 (304)
151 1ds9_A Outer arm dynein; leuci 99.6 4.6E-17 1.6E-21 146.5 -5.3 133 20-166 18-157 (198)
152 1a9n_A U2A', U2A'; complex (nu 99.5 9.6E-15 3.3E-19 128.6 8.5 131 121-257 15-152 (176)
153 3uto_A Twitchin; kinase, muscl 99.5 2.7E-14 9.3E-19 148.8 9.9 90 433-522 156-246 (573)
154 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.7E-21 144.1 -8.0 131 192-328 43-184 (198)
155 4fs7_A Uncharacterized protein 99.5 3.2E-12 1.1E-16 127.7 21.3 199 117-324 154-374 (394)
156 4b99_A Mitogen-activated prote 99.5 6.4E-14 2.2E-18 139.1 8.4 89 434-523 54-151 (398)
157 3g39_A Variable lymphocyte rec 99.4 3.5E-13 1.2E-17 117.6 11.1 105 22-162 11-115 (170)
158 4f9c_A Cell division cycle 7-r 99.4 1.1E-13 3.7E-18 135.8 8.7 94 428-523 15-113 (361)
159 2qkw_B Protein kinase; three-h 99.4 6E-14 2.1E-18 136.2 6.4 101 422-522 27-127 (321)
160 3g39_A Variable lymphocyte rec 99.4 6.8E-13 2.3E-17 115.8 12.3 88 245-332 30-118 (170)
161 3v5w_A G-protein coupled recep 99.4 2.5E-13 8.6E-18 141.2 10.2 91 433-523 188-285 (689)
162 3uim_A Brassinosteroid insensi 99.4 1.3E-13 4.3E-18 134.2 7.3 104 420-523 16-120 (326)
163 2r9u_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 115.7 11.3 105 22-162 14-118 (174)
164 4aw2_A Serine/threonine-protei 99.4 1.5E-13 5E-18 138.6 7.0 100 424-523 64-167 (437)
165 3s95_A LIMK-1, LIM domain kina 99.4 6.6E-13 2.3E-17 128.1 11.0 91 433-523 9-100 (310)
166 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 114.6 11.4 105 79-187 15-119 (174)
167 2c30_A Serine/threonine-protei 99.4 4.6E-13 1.6E-17 129.9 9.5 102 422-523 23-135 (321)
168 3fxz_A Serine/threonine-protei 99.4 6.3E-13 2.1E-17 127.5 9.7 92 432-523 18-110 (297)
169 3fe3_A MAP/microtubule affinit 99.4 7.8E-13 2.7E-17 128.5 10.1 93 431-523 12-107 (328)
170 3zgw_A Maternal embryonic leuc 99.4 6.6E-13 2.3E-17 129.9 8.5 93 430-522 6-100 (347)
171 3p86_A Serine/threonine-protei 99.4 8.8E-13 3E-17 127.2 9.2 99 424-523 27-127 (309)
172 3cbl_A C-FES, proto-oncogene t 99.4 4.7E-13 1.6E-17 132.9 6.9 97 427-523 107-205 (377)
173 4hcu_A Tyrosine-protein kinase 99.4 1E-12 3.5E-17 124.0 8.8 92 431-523 7-98 (269)
174 3qd2_B Eukaryotic translation 99.4 1.6E-12 5.4E-17 126.6 10.4 91 433-523 5-154 (332)
175 2qol_A Ephrin receptor; recept 99.4 1.1E-12 3.7E-17 130.0 9.0 91 433-523 44-139 (373)
176 3uqc_A Probable conserved tran 99.4 1.2E-12 4E-17 124.8 8.8 90 434-523 31-124 (286)
177 3v8s_A RHO-associated protein 99.4 4.9E-13 1.7E-17 133.7 6.4 98 426-523 61-162 (410)
178 2vd5_A DMPK protein; serine/th 99.4 7.7E-13 2.6E-17 132.4 7.8 100 424-523 51-154 (412)
179 2psq_A Fibroblast growth facto 99.4 1.5E-12 5.3E-17 128.8 9.8 92 432-523 79-180 (370)
180 3gen_A Tyrosine-protein kinase 99.4 1.3E-12 4.6E-17 124.2 9.0 97 426-523 16-112 (283)
181 4fs7_A Uncharacterized protein 99.4 4.6E-11 1.6E-15 119.2 20.5 271 31-324 58-328 (394)
182 2nru_A Interleukin-1 receptor- 99.3 2.7E-12 9.4E-17 123.6 11.1 101 421-522 12-122 (307)
183 4gt6_A Cell surface protein; l 99.3 1.2E-10 4.3E-15 116.1 23.1 287 22-328 66-369 (394)
184 1luf_A Muscle-specific tyrosin 99.3 1.8E-12 6.1E-17 127.0 9.4 98 426-523 39-143 (343)
185 3sxs_A Cytoplasmic tyrosine-pr 99.3 1.4E-12 4.9E-17 122.9 8.2 92 431-523 5-96 (268)
186 3c0i_A Peripheral plasma membr 99.3 1.8E-12 6.2E-17 127.4 9.1 90 433-522 23-118 (351)
187 3kul_A Ephrin type-A receptor 99.3 2.1E-12 7E-17 125.5 9.4 91 433-523 48-143 (325)
188 1qcf_A Haematopoetic cell kina 99.3 1.8E-12 6.2E-17 132.0 9.2 96 426-523 180-275 (454)
189 2yab_A Death-associated protei 99.3 2.1E-12 7.2E-17 127.1 9.4 92 432-523 10-108 (361)
190 1o6l_A RAC-beta serine/threoni 99.3 2.5E-12 8.4E-17 125.4 9.5 91 433-523 4-98 (337)
191 3un9_A NLR family member X1; l 99.3 4.1E-14 1.4E-18 139.6 -3.4 164 76-259 72-253 (372)
192 3un9_A NLR family member X1; l 99.3 3.7E-14 1.3E-18 140.0 -3.8 163 43-210 71-252 (372)
193 3ugc_A Tyrosine-protein kinase 99.3 2E-12 6.7E-17 123.8 8.3 91 433-523 9-106 (295)
194 1fot_A TPK1 delta, CAMP-depend 99.3 2.8E-12 9.4E-17 124.1 9.3 91 433-523 5-99 (318)
195 2bdw_A Hypothetical protein K1 99.3 2.6E-12 8.9E-17 126.7 9.3 93 431-523 26-121 (362)
196 3hko_A Calcium/calmodulin-depe 99.3 1.7E-12 5.9E-17 127.2 8.0 96 427-522 19-120 (345)
197 1tki_A Titin; serine kinase, m 99.3 3.3E-12 1.1E-16 123.8 9.8 90 433-523 4-94 (321)
198 4eqm_A Protein kinase; transfe 99.3 3.7E-12 1.3E-16 121.8 10.0 91 433-523 10-104 (294)
199 1opk_A P150, C-ABL, proto-onco 99.3 1.3E-12 4.5E-17 134.4 7.2 96 427-523 213-309 (495)
200 3vhe_A Vascular endothelial gr 99.3 1.5E-12 5E-17 128.5 7.2 101 423-523 11-120 (359)
201 1kob_A Twitchin; kinase, intra 99.3 3.1E-12 1.1E-16 127.1 9.6 90 433-522 50-140 (387)
202 2x4f_A Myosin light chain kina 99.3 2.9E-12 9.8E-17 126.9 9.3 86 437-522 92-178 (373)
203 1p4o_A Insulin-like growth fac 99.3 2.3E-12 8E-17 124.9 8.3 101 423-523 14-121 (322)
204 4fvq_A Tyrosine-protein kinase 99.3 2.7E-12 9.3E-17 122.4 8.6 91 433-523 7-105 (289)
205 3kmu_A ILK, integrin-linked ki 99.3 2E-12 7E-17 121.9 7.5 90 433-523 9-102 (271)
206 2y0a_A Death-associated protei 99.3 3.7E-12 1.3E-16 123.8 9.5 91 433-523 10-107 (326)
207 2ivs_A Proto-oncogene tyrosine 99.3 3.2E-12 1.1E-16 123.4 8.9 96 428-523 17-119 (314)
208 4fr4_A YANK1, serine/threonine 99.3 3.4E-12 1.2E-16 126.5 9.1 91 433-523 14-108 (384)
209 3kfa_A Tyrosine-protein kinase 99.3 2.4E-12 8.3E-17 122.7 7.7 98 425-523 4-102 (288)
210 3t9t_A Tyrosine-protein kinase 99.3 3.2E-12 1.1E-16 120.4 8.3 91 432-523 6-96 (267)
211 3gni_B Strad alpha; kinase fol 99.3 5E-12 1.7E-16 126.1 10.2 93 431-523 22-119 (389)
212 1fmk_A C-SRC, P60-SRC, tyrosin 99.3 2.5E-12 8.5E-17 130.8 8.1 95 426-522 176-270 (452)
213 3f3z_A Calcium/calmodulin-depe 99.3 3.9E-12 1.3E-16 120.5 8.9 90 433-522 8-98 (277)
214 3l9p_A Anaplastic lymphoma kin 99.3 3.6E-12 1.2E-16 126.0 8.9 91 433-523 70-167 (367)
215 1rdq_E PKA C-alpha, CAMP-depen 99.3 4.4E-12 1.5E-16 124.4 9.5 91 433-523 40-134 (350)
216 3soa_A Calcium/calmodulin-depe 99.3 4.2E-12 1.5E-16 128.4 9.5 92 432-523 9-103 (444)
217 3a8x_A Protein kinase C IOTA t 99.3 6.5E-12 2.2E-16 122.9 10.5 91 433-523 8-103 (345)
218 3uc3_A Serine/threonine-protei 99.3 5.1E-12 1.8E-16 124.6 9.5 91 432-523 18-109 (361)
219 4euu_A Serine/threonine-protei 99.3 5.7E-12 1.9E-16 122.1 9.7 91 433-523 8-102 (319)
220 3is5_A Calcium-dependent prote 99.3 6E-12 2E-16 119.8 9.6 90 433-522 21-112 (285)
221 1k9a_A Carboxyl-terminal SRC k 99.3 3.9E-12 1.3E-16 129.3 8.7 94 427-523 186-280 (450)
222 3a62_A Ribosomal protein S6 ki 99.3 3.5E-12 1.2E-16 124.0 7.8 92 432-523 15-114 (327)
223 3soc_A Activin receptor type-2 99.3 5.4E-12 1.9E-16 122.4 8.9 92 430-523 20-115 (322)
224 3txo_A PKC-L, NPKC-ETA, protei 99.3 5.6E-12 1.9E-16 123.7 9.0 91 433-523 22-117 (353)
225 2jam_A Calcium/calmodulin-depe 99.3 6.9E-12 2.4E-16 120.6 9.4 90 433-522 8-98 (304)
226 1t46_A HOMO sapiens V-KIT hard 99.3 4.7E-12 1.6E-16 122.2 8.2 96 428-523 17-120 (313)
227 3eqc_A Dual specificity mitoge 99.3 7.9E-12 2.7E-16 123.3 10.0 91 433-523 32-124 (360)
228 2ac3_A MAP kinase-interacting 99.3 1E-11 3.5E-16 120.1 10.6 90 434-523 12-104 (316)
229 2pvf_A Fibroblast growth facto 99.3 5.4E-12 1.8E-16 123.1 8.7 95 429-523 30-134 (334)
230 1xjd_A Protein kinase C, theta 99.3 5.4E-12 1.9E-16 123.3 8.4 93 431-523 14-111 (345)
231 2h8h_A Proto-oncogene tyrosine 99.3 3.6E-12 1.2E-16 132.4 7.5 95 426-522 259-353 (535)
232 2w4o_A Calcium/calmodulin-depe 99.3 4.4E-12 1.5E-16 124.5 7.6 90 432-523 51-141 (349)
233 3tki_A Serine/threonine-protei 99.3 2.2E-12 7.4E-17 125.3 5.3 90 433-522 6-97 (323)
234 3tt0_A Basic fibroblast growth 99.3 5.9E-12 2E-16 125.2 8.6 94 430-523 65-168 (382)
235 1x8b_A WEE1HU, WEE1-like prote 99.3 1E-11 3.4E-16 118.2 9.6 92 432-523 9-104 (289)
236 2clq_A Mitogen-activated prote 99.3 1.1E-11 3.8E-16 118.5 9.9 90 434-523 22-112 (295)
237 2j7t_A Serine/threonine-protei 99.3 8.4E-12 2.9E-16 119.8 9.0 92 432-523 17-109 (302)
238 2buj_A Serine/threonine-protei 99.3 9.6E-12 3.3E-16 120.3 9.2 94 430-523 25-123 (317)
239 1qpc_A LCK kinase; alpha beta 99.3 6E-12 2E-16 119.4 7.6 94 427-522 6-99 (279)
240 3kk8_A Calcium/calmodulin depe 99.3 1.5E-11 5E-16 117.0 10.3 90 433-522 5-97 (284)
241 3fdn_A Serine/threonine-protei 99.3 9.4E-12 3.2E-16 118.0 8.9 92 432-523 7-102 (279)
242 1rjb_A FL cytokine receptor; k 99.3 6E-12 2.1E-16 123.3 7.7 96 428-523 39-142 (344)
243 3niz_A Rhodanese family protei 99.3 7.8E-12 2.7E-16 120.6 8.4 93 430-523 17-111 (311)
244 4gt6_A Cell surface protein; l 99.3 8E-10 2.7E-14 110.2 23.2 297 32-349 51-367 (394)
245 2a2a_A Death-associated protei 99.3 1.1E-11 3.6E-16 120.3 9.2 92 432-523 10-108 (321)
246 2y94_A 5'-AMP-activated protei 99.3 7E-12 2.4E-16 127.7 8.2 91 433-523 15-109 (476)
247 4dc2_A Protein kinase C IOTA t 99.3 7.2E-12 2.5E-16 124.6 8.0 91 433-523 51-146 (396)
248 2acx_A G protein-coupled recep 99.2 7.7E-12 2.6E-16 129.5 8.4 92 432-523 182-277 (576)
249 3lxl_A Tyrosine-protein kinase 99.2 1.3E-11 4.6E-16 119.9 9.7 91 433-523 22-119 (327)
250 2yfx_A Tyrosine-protein kinase 99.2 1.1E-11 3.8E-16 120.5 9.0 93 431-523 27-126 (327)
251 2pmi_A Negative RE, cyclin-dep 99.2 9.5E-12 3.2E-16 120.4 8.5 89 433-522 4-94 (317)
252 2wqm_A Serine/threonine-protei 99.2 2E-11 7E-16 117.6 10.8 92 432-523 30-125 (310)
253 3q5i_A Protein kinase; CDPK, m 99.2 1.6E-11 5.6E-16 126.7 10.6 91 432-522 34-138 (504)
254 3lij_A Calcium/calmodulin depe 99.2 1E-11 3.5E-16 127.9 9.0 90 433-522 36-128 (494)
255 2rku_A Serine/threonine-protei 99.2 1.9E-11 6.5E-16 116.9 10.3 92 432-523 13-108 (294)
256 4eut_A Serine/threonine-protei 99.2 8.9E-12 3.1E-16 124.5 8.2 91 433-523 8-102 (396)
257 2w5a_A Serine/threonine-protei 99.2 1.4E-11 4.6E-16 116.9 9.1 91 433-523 5-100 (279)
258 2i1m_A Macrophage colony-stimu 99.2 1.5E-11 5.3E-16 119.8 9.7 97 427-523 39-143 (333)
259 3cok_A Serine/threonine-protei 99.2 1.3E-11 4.6E-16 116.9 8.9 92 432-523 9-104 (278)
260 3bhy_A Death-associated protei 99.2 1.5E-11 5.1E-16 116.8 9.3 90 434-523 5-101 (283)
261 2h6d_A 5'-AMP-activated protei 99.2 1.6E-11 5.5E-16 116.1 9.4 91 433-523 10-104 (276)
262 3kn6_A Ribosomal protein S6 ki 99.2 1.8E-11 6.2E-16 118.8 10.0 82 439-523 16-99 (325)
263 2w1i_A JAK2; chromosomal rearr 99.2 1.8E-11 6E-16 119.0 9.8 91 433-523 40-137 (326)
264 2owb_A Serine/threonine-protei 99.2 2.1E-11 7.3E-16 118.9 10.4 92 432-523 39-134 (335)
265 3mwu_A Calmodulin-domain prote 99.2 1.3E-11 4.3E-16 127.0 9.0 91 432-522 20-113 (486)
266 3h4j_B AMPK kdaid, SNF1-like p 99.2 8.8E-12 3E-16 121.4 7.4 89 433-522 8-100 (336)
267 3ork_A Serine/threonine protei 99.2 6.4E-12 2.2E-16 121.3 6.3 91 433-523 11-109 (311)
268 3c4z_A Rhodopsin kinase; Ser/T 99.2 1.6E-11 5.4E-16 126.7 9.5 91 433-523 184-278 (543)
269 3qup_A Tyrosine-protein kinase 99.2 1E-11 3.5E-16 120.4 7.7 97 426-522 15-123 (323)
270 2r5t_A Serine/threonine-protei 99.2 1.1E-11 3.9E-16 122.4 8.0 91 433-523 37-132 (373)
271 4e5w_A Tyrosine-protein kinase 99.2 1.7E-11 5.9E-16 117.6 9.0 89 434-522 21-117 (302)
272 4agu_A Cyclin-dependent kinase 99.2 1.7E-11 5.8E-16 118.2 9.0 89 434-522 3-94 (311)
273 1phk_A Phosphorylase kinase; g 99.2 2.3E-11 7.8E-16 116.5 9.7 92 432-523 15-117 (298)
274 2h34_A Serine/threonine-protei 99.2 2E-11 7E-16 117.6 9.3 91 433-523 33-127 (309)
275 3dtc_A Mitogen-activated prote 99.2 9E-12 3.1E-16 117.6 6.7 89 433-522 6-98 (271)
276 1mp8_A Focal adhesion kinase 1 99.2 1.6E-11 5.5E-16 116.6 8.3 94 429-523 10-108 (281)
277 3lxp_A Non-receptor tyrosine-p 99.2 2.5E-11 8.7E-16 117.4 9.8 88 436-523 33-128 (318)
278 1ob3_A PFPK5, cell division co 99.2 1.1E-11 3.9E-16 118.1 7.2 89 434-523 2-92 (288)
279 2xir_A Vascular endothelial gr 99.2 1.6E-11 5.6E-16 118.6 8.4 100 424-523 17-125 (316)
280 2vgo_A Serine/threonine-protei 99.2 1.8E-11 6.2E-16 116.4 8.5 91 433-523 13-107 (284)
281 2i0e_A Protein kinase C-beta I 99.2 1.4E-11 4.7E-16 120.9 7.7 92 432-523 18-114 (353)
282 2eva_A TAK1 kinase - TAB1 chim 99.2 1.7E-11 5.9E-16 118.0 8.1 86 433-523 7-92 (307)
283 4ejn_A RAC-alpha serine/threon 99.2 9.5E-12 3.2E-16 126.4 6.5 92 432-523 146-241 (446)
284 3a7i_A MST3 kinase, serine/thr 99.2 2.6E-11 8.9E-16 116.5 9.2 91 433-523 21-113 (303)
285 2vwi_A Serine/threonine-protei 99.2 8.7E-12 3E-16 119.7 5.8 94 430-523 11-106 (303)
286 2x7f_A TRAF2 and NCK-interacti 99.2 1.1E-11 3.7E-16 120.4 6.6 102 421-523 11-120 (326)
287 2ifg_A High affinity nerve gro 99.2 4.3E-11 1.5E-15 117.3 10.9 103 24-162 12-116 (347)
288 1t4h_A Serine/threonine-protei 99.2 3.7E-11 1.3E-15 114.5 10.2 90 434-523 26-122 (290)
289 3gxj_A TGF-beta receptor type- 99.2 2.3E-11 7.8E-16 116.7 8.7 87 433-523 2-94 (303)
290 2yex_A Serine/threonine-protei 99.2 1.3E-11 4.5E-16 116.7 6.8 90 433-522 6-97 (276)
291 3nyv_A Calmodulin-domain prote 99.2 2.1E-11 7.1E-16 125.3 8.8 92 432-523 24-119 (484)
292 2qr7_A Ribosomal protein S6 ki 99.2 1.1E-11 3.8E-16 121.1 6.4 88 432-523 20-109 (342)
293 1zy4_A Serine/threonine-protei 99.2 2.7E-11 9.1E-16 116.2 9.0 90 433-523 5-108 (303)
294 1u59_A Tyrosine-protein kinase 99.2 2.4E-11 8.3E-16 115.7 8.6 89 433-522 8-101 (287)
295 1mqb_A Ephrin type-A receptor 99.2 2.6E-11 8.8E-16 118.2 8.5 91 433-523 43-139 (333)
296 2eue_A Carbon catabolite derep 99.2 4.2E-11 1.4E-15 113.3 9.7 89 434-523 13-105 (275)
297 3o0g_A Cell division protein k 99.2 3.2E-11 1.1E-15 115.2 8.9 88 434-522 2-92 (292)
298 1xbb_A Tyrosine-protein kinase 99.2 2.4E-11 8.1E-16 116.0 8.0 96 427-523 9-110 (291)
299 2wei_A Calmodulin-domain prote 99.2 3.4E-11 1.2E-15 114.7 9.0 91 432-522 20-113 (287)
300 2ifg_A High affinity nerve gro 99.2 5.7E-11 2E-15 116.5 10.8 89 121-210 27-116 (347)
301 1fvr_A Tyrosine-protein kinase 99.2 2.8E-11 9.6E-16 117.6 8.4 90 434-523 25-119 (327)
302 2y7j_A Phosphorylase B kinase 99.2 4.8E-11 1.6E-15 117.8 10.2 94 429-522 89-192 (365)
303 1u5q_A Serine/threonine protei 99.2 3.3E-11 1.1E-15 118.1 8.9 89 433-522 53-145 (348)
304 2zv2_A Calcium/calmodulin-depe 99.2 1.2E-11 4E-16 118.6 5.5 89 433-521 12-129 (298)
305 3gbz_A Kinase, CMGC CDK; ssgci 99.2 2.3E-11 7.8E-16 118.4 7.5 92 431-523 31-125 (329)
306 3llt_A Serine/threonine kinase 99.2 3.5E-11 1.2E-15 118.6 8.7 102 420-523 21-128 (360)
307 4f0f_A Serine/threonine-protei 99.2 3.7E-11 1.3E-15 114.4 8.5 88 433-522 18-113 (287)
308 1byg_A CSK, protein (C-termina 99.2 2.6E-11 8.9E-16 114.9 7.1 91 430-523 17-108 (278)
309 4aaa_A Cyclin-dependent kinase 99.2 4.4E-11 1.5E-15 116.4 8.9 90 433-522 24-116 (331)
310 3com_A Serine/threonine-protei 99.2 4.5E-11 1.5E-15 115.4 8.6 89 432-522 27-116 (314)
311 2pml_X PFPK7, Ser/Thr protein 99.2 8.9E-12 3.1E-16 122.2 3.6 87 433-520 30-133 (348)
312 3p1a_A MYT1 kinase, membrane-a 99.2 3.7E-11 1.3E-15 115.9 7.8 89 434-523 57-149 (311)
313 2i6l_A Mitogen-activated prote 99.2 5.9E-11 2E-15 114.7 9.0 90 433-523 10-114 (320)
314 2ozo_A Tyrosine-protein kinase 99.2 3.5E-11 1.2E-15 126.8 7.8 88 434-522 335-427 (613)
315 3q4u_A Activin receptor type-1 99.2 6.4E-11 2.2E-15 113.5 8.9 88 432-523 6-99 (301)
316 3dbq_A Dual specificity protei 99.2 5.2E-11 1.8E-15 116.5 8.4 91 432-523 7-101 (343)
317 3brb_A Proto-oncogene tyrosine 99.2 5.3E-11 1.8E-15 114.9 8.3 98 425-522 25-133 (313)
318 2a19_B Interferon-induced, dou 99.1 4.3E-11 1.5E-15 113.6 7.5 87 433-523 10-113 (284)
319 3i6u_A CDS1, serine/threonine- 99.1 2E-11 6.8E-16 122.9 5.2 90 432-522 133-231 (419)
320 3e7e_A HBUB1, BUB1A, mitotic c 99.1 2.9E-11 1E-15 119.4 6.2 93 427-522 58-159 (365)
321 3pg1_A Mitogen-activated prote 99.1 3.9E-11 1.3E-15 118.4 6.9 98 424-522 12-125 (362)
322 2ycf_A Serine/threonine-protei 99.1 3.8E-11 1.3E-15 116.4 6.5 89 433-522 9-106 (322)
323 3f66_A Hepatocyte growth facto 99.1 6.8E-11 2.3E-15 113.2 8.1 91 433-523 24-120 (298)
324 3dls_A PAS domain-containing s 99.1 2.9E-11 9.8E-16 117.9 5.3 92 432-523 22-123 (335)
325 3c1x_A Hepatocyte growth facto 99.1 4.8E-11 1.7E-15 118.0 7.0 90 434-523 89-184 (373)
326 1vzo_A Ribosomal protein S6 ki 99.1 2.6E-11 8.7E-16 119.3 5.0 91 433-523 53-152 (355)
327 3cc6_A Protein tyrosine kinase 99.1 9.9E-11 3.4E-15 111.0 8.8 92 431-523 9-105 (281)
328 2r3i_A Cell division protein k 99.1 7.1E-11 2.4E-15 113.1 7.8 89 434-523 3-94 (299)
329 3pls_A Macrophage-stimulating 99.1 1.1E-10 3.7E-15 111.7 9.0 89 435-523 22-116 (298)
330 3nsz_A CK II alpha, casein kin 99.1 1.3E-10 4.3E-15 113.1 9.5 88 433-523 35-126 (330)
331 2zmd_A Dual specificity protei 99.1 1.1E-10 3.7E-15 116.3 9.1 90 433-523 55-148 (390)
332 1b6c_B TGF-B superfamily recep 99.1 1.3E-10 4.6E-15 113.5 9.4 89 431-523 39-133 (342)
333 3lb7_A RAF proto-oncogene seri 99.1 1.4E-10 5E-15 111.5 9.4 90 430-522 32-123 (307)
334 2izr_A Casein kinase I isoform 99.1 6.2E-11 2.1E-15 115.3 6.9 88 433-523 8-97 (330)
335 1cm8_A Phosphorylated MAP kina 99.1 8.6E-11 2.9E-15 116.0 7.8 91 432-523 23-122 (367)
336 2wtk_C Serine/threonine-protei 99.1 1.5E-10 5E-15 111.2 9.2 89 433-522 4-99 (305)
337 3mtl_A Cell division protein k 99.1 2.5E-11 8.5E-16 117.8 3.8 89 434-523 2-92 (324)
338 3an0_A Dual specificity mitoge 99.1 1.1E-10 3.7E-15 114.1 8.3 94 429-523 46-142 (340)
339 3poz_A Epidermal growth factor 99.1 8.6E-11 2.9E-15 114.2 7.5 90 433-523 14-109 (327)
340 3mdy_A Bone morphogenetic prot 99.1 1.9E-10 6.6E-15 112.1 10.0 90 430-523 33-128 (337)
341 3og7_A AKAP9-BRAF fusion prote 99.1 1.2E-10 4.2E-15 110.9 8.0 90 430-522 20-111 (289)
342 3fme_A Dual specificity mitoge 99.1 1.6E-10 5.5E-15 110.1 8.8 92 431-523 4-98 (290)
343 3rp9_A Mitogen-activated prote 99.1 1.3E-10 4.5E-15 118.4 8.7 90 433-523 52-149 (458)
344 3cek_A Dual specificity protei 99.1 1E-10 3.6E-15 112.8 7.5 101 422-523 16-120 (313)
345 4fl3_A Tyrosine-protein kinase 99.1 1.3E-10 4.6E-15 122.8 8.9 83 440-523 375-462 (635)
346 3oz6_A Mitogen-activated prote 99.1 2E-10 6.8E-15 114.4 9.6 91 432-523 7-103 (388)
347 3ll6_A Cyclin G-associated kin 99.1 9.9E-11 3.4E-15 114.1 7.3 96 427-523 21-126 (337)
348 2j0j_A Focal adhesion kinase 1 99.1 1.9E-10 6.5E-15 122.1 10.0 96 427-523 383-483 (656)
349 3eb0_A Putative uncharacterize 99.1 8.2E-11 2.8E-15 117.0 6.6 89 430-523 3-130 (383)
350 3n9x_A Phosphotransferase; mal 99.1 1.2E-10 4.2E-15 117.6 7.9 91 432-523 24-122 (432)
351 1ua2_A CAK, cell division prot 99.1 9.8E-11 3.3E-15 114.7 6.4 91 432-523 8-104 (346)
352 3lm5_A Serine/threonine-protei 99.1 8.4E-11 2.9E-15 114.2 5.7 100 423-522 17-121 (327)
353 1u46_A ACK-1, activated CDC42 99.1 1.8E-10 6E-15 109.8 7.8 90 433-523 17-113 (291)
354 3ttj_A Mitogen-activated prote 99.1 1.8E-10 6.3E-15 117.2 8.4 90 432-522 60-158 (464)
355 3pfq_A PKC-B, PKC-beta, protei 99.1 1.9E-10 6.4E-15 122.5 8.6 92 432-523 339-435 (674)
356 4h09_A Hypothetical leucine ri 99.1 2.7E-08 9.4E-13 98.5 23.7 284 20-325 46-342 (379)
357 3byv_A Rhoptry kinase; malaria 99.1 4.2E-11 1.4E-15 118.8 3.1 92 431-523 70-192 (377)
358 2vuw_A Serine/threonine-protei 99.1 5.7E-12 2E-16 123.0 -3.3 88 433-521 19-153 (336)
359 2pzi_A Probable serine/threoni 99.1 7.6E-11 2.6E-15 126.2 5.1 90 433-522 79-176 (681)
360 3qa8_A MGC80376 protein; kinas 99.1 5.7E-11 2E-15 124.4 4.0 91 433-523 13-111 (676)
361 2xrw_A Mitogen-activated prote 99.0 3.6E-10 1.2E-14 111.8 9.1 89 433-522 24-121 (371)
362 2b9h_A MAP kinase FUS3, mitoge 99.0 3.2E-10 1.1E-14 111.4 8.5 91 432-523 9-106 (353)
363 2y4i_B KSR2, HKSR2, kinase sup 99.0 3.5E-11 1.2E-15 116.5 1.6 98 424-523 23-122 (319)
364 1nxk_A MAP kinase-activated pr 99.0 2.3E-10 7.8E-15 114.3 7.6 85 434-523 61-152 (400)
365 3qyz_A Mitogen-activated prote 99.0 2.5E-10 8.7E-15 112.6 7.8 95 428-523 21-122 (364)
366 3aln_A Dual specificity mitoge 99.0 6E-10 2E-14 108.1 10.2 91 431-522 19-112 (327)
367 3m2w_A MAP kinase-activated pr 99.0 2.9E-10 1E-14 108.9 7.9 85 434-523 17-108 (299)
368 3kex_A Receptor tyrosine-prote 99.0 7.9E-11 2.7E-15 114.3 3.9 89 434-523 13-107 (325)
369 3mi9_A Cell division protein k 99.0 3.5E-10 1.2E-14 111.0 7.7 90 433-523 16-116 (351)
370 3lzb_A Epidermal growth factor 99.0 3.2E-10 1.1E-14 110.0 7.3 90 433-523 14-109 (327)
371 2rio_A Serine/threonine-protei 99.0 5.9E-10 2E-14 112.6 8.6 84 436-523 17-101 (434)
372 2fst_X Mitogen-activated prote 99.0 2.9E-10 9.8E-15 112.2 6.0 90 432-522 27-125 (367)
373 3g33_A Cell division protein k 99.0 5.3E-10 1.8E-14 107.5 7.7 91 432-523 7-111 (308)
374 2iwi_A Serine/threonine-protei 99.0 1.2E-10 4.2E-15 112.2 3.2 96 428-523 25-132 (312)
375 4exu_A Mitogen-activated prote 99.0 4.8E-10 1.7E-14 110.9 7.5 90 432-522 40-138 (371)
376 1csn_A Casein kinase-1; phosph 99.0 5.1E-10 1.7E-14 107.0 7.4 88 433-523 9-98 (298)
377 1blx_A Cyclin-dependent kinase 99.0 2.1E-10 7.1E-15 111.3 4.7 93 430-523 7-111 (326)
378 3g2f_A Bone morphogenetic prot 99.0 4.4E-10 1.5E-14 109.5 6.9 88 432-523 11-105 (336)
379 3op5_A Serine/threonine-protei 99.0 6.7E-10 2.3E-14 109.5 7.8 91 432-523 33-144 (364)
380 2v62_A Serine/threonine-protei 99.0 5.1E-10 1.7E-14 109.5 5.9 90 433-523 36-144 (345)
381 3coi_A Mitogen-activated prote 99.0 5.4E-10 1.8E-14 109.8 6.1 89 433-522 23-120 (353)
382 2jii_A Serine/threonine-protei 98.9 2.2E-10 7.4E-15 112.6 3.1 85 433-523 41-150 (352)
383 4h09_A Hypothetical leucine ri 98.9 1.5E-07 5.2E-12 93.1 23.4 274 20-315 69-355 (379)
384 3rgf_A Cyclin-dependent kinase 98.9 6.9E-10 2.3E-14 111.2 6.2 86 434-522 20-111 (405)
385 2dyl_A Dual specificity mitoge 98.9 2.6E-09 8.9E-14 103.1 9.8 92 429-521 20-114 (318)
386 3p23_A Serine/threonine-protei 98.9 6.5E-10 2.2E-14 112.1 5.3 89 431-523 21-110 (432)
387 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.1E-14 106.8 6.9 160 120-303 167-341 (362)
388 3e3p_A Protein kinase, putativ 98.9 1.5E-09 5E-14 106.9 7.5 93 427-521 16-116 (360)
389 3en9_A Glycoprotease, O-sialog 98.9 3.4E-09 1.1E-13 109.8 10.5 86 437-523 339-432 (540)
390 3fhr_A MAP kinase-activated pr 98.9 1.7E-09 5.8E-14 105.4 7.7 88 432-523 26-119 (336)
391 3kvw_A DYRK2, dual specificity 98.9 2.4E-09 8.3E-14 107.9 9.1 90 432-523 95-191 (429)
392 3q60_A ROP5B; pseudokinase, tr 98.9 1.6E-09 5.6E-14 107.0 7.6 90 432-523 60-180 (371)
393 1z57_A Dual specificity protei 98.9 1.4E-09 4.9E-14 105.8 6.4 89 433-523 13-109 (339)
394 1wak_A Serine/threonine-protei 98.9 1.5E-09 5.2E-14 108.2 6.6 88 433-522 36-136 (397)
395 2ra8_A Uncharacterized protein 98.9 8.5E-10 2.9E-14 107.8 4.2 178 125-305 107-320 (362)
396 1j1b_A Glycogen synthase kinas 98.9 1.4E-09 4.7E-14 109.4 5.4 84 434-522 54-144 (420)
397 3a99_A Proto-oncogene serine/t 98.9 1.1E-09 3.8E-14 105.9 4.4 94 430-523 39-142 (320)
398 3uzp_A CKI-delta, CKID, casein 98.8 3.8E-09 1.3E-13 100.8 6.5 88 432-522 7-96 (296)
399 1q8y_A SR protein kinase; tran 98.8 2.6E-09 9E-14 105.6 5.4 89 433-523 18-122 (373)
400 2vx3_A Dual specificity tyrosi 98.8 5.2E-09 1.8E-13 103.8 7.4 95 427-523 47-148 (382)
401 4hgt_A Casein kinase I isoform 98.8 4.5E-09 1.5E-13 100.2 6.5 88 432-522 7-96 (296)
402 4e7w_A Glycogen synthase kinas 98.8 3E-09 1E-13 106.0 5.4 80 433-516 39-124 (394)
403 3sv0_A Casein kinase I-like; t 98.8 1.1E-08 3.8E-13 104.2 8.3 88 433-523 6-95 (483)
404 1zar_A RIO2 kinase; serine kin 98.7 9.7E-09 3.3E-13 97.1 6.5 90 426-519 82-189 (282)
405 2eu9_A Dual specificity protei 98.7 9.9E-09 3.4E-13 100.6 6.5 89 433-523 18-114 (355)
406 4azs_A Methyltransferase WBDD; 98.7 1.8E-08 6.3E-13 104.8 6.9 82 442-523 242-335 (569)
407 1io0_A Tropomodulin; LRR prote 98.6 1E-08 3.5E-13 90.4 0.8 50 37-90 29-79 (185)
408 1io0_A Tropomodulin; LRR prote 98.4 5.6E-08 1.9E-12 85.6 2.4 67 192-258 31-106 (185)
409 3rw6_A Nuclear RNA export fact 98.4 4.7E-08 1.6E-12 90.6 0.1 63 219-282 168-234 (267)
410 3rw6_A Nuclear RNA export fact 98.3 4.7E-07 1.6E-11 83.9 5.9 100 25-132 148-258 (267)
411 1zth_A RIO1 serine protein kin 98.2 8.9E-07 3E-11 82.4 4.5 83 435-521 48-164 (258)
412 3e4g_A ATP synthase subunit S, 98.2 9E-07 3.1E-11 76.0 3.7 84 45-136 62-150 (176)
413 3e4g_A ATP synthase subunit S, 98.1 6E-07 2.1E-11 77.1 2.2 85 19-112 60-150 (176)
414 3dzo_A Rhoptry kinase domain; 97.9 7.5E-06 2.6E-10 81.8 4.8 61 429-489 73-137 (413)
415 4gyi_A RIO2 kinase; protein ki 97.8 1.9E-05 6.5E-10 77.0 6.1 91 427-519 88-200 (397)
416 3tm0_A Aminoglycoside 3'-phosp 97.6 0.00012 4E-09 68.0 7.3 89 431-520 11-100 (263)
417 1pgv_A TMD-1, tropomodulin TMD 97.4 3.4E-05 1.2E-09 67.5 0.9 46 41-90 38-84 (197)
418 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00011 3.8E-09 64.2 3.0 43 216-258 65-111 (197)
419 3rfe_A Platelet glycoprotein I 97.2 0.00074 2.5E-08 55.0 6.8 61 271-333 11-72 (130)
420 3d1u_A Putative fructosamine-3 97.1 0.00047 1.6E-08 64.9 5.7 76 438-517 19-97 (288)
421 1nd4_A Aminoglycoside 3'-phosp 97.1 0.00041 1.4E-08 64.1 5.0 84 432-518 18-103 (264)
422 3rfe_A Platelet glycoprotein I 97.1 0.00098 3.4E-08 54.3 6.5 57 23-89 11-68 (130)
423 3dxp_A Putative acyl-COA dehyd 95.3 0.016 5.5E-07 56.2 5.4 78 439-517 43-128 (359)
424 3f7w_A Putative fructosamine-3 94.6 0.028 9.5E-07 52.6 4.6 78 436-517 17-97 (288)
425 3jr1_A Putative fructosamine-3 93.6 0.21 7.1E-06 47.1 8.4 76 438-517 40-118 (312)
426 2olc_A MTR kinase, methylthior 92.1 0.13 4.5E-06 50.4 5.0 75 439-515 35-120 (397)
427 4gkh_A Aminoglycoside 3'-phosp 91.9 0.52 1.8E-05 43.1 8.6 78 441-521 31-111 (272)
428 3r70_A Aminoglycoside phosphot 90.8 0.3 1E-05 46.2 5.9 74 435-518 38-115 (320)
429 3ovc_A Hygromycin-B 4-O-kinase 88.6 0.78 2.7E-05 44.2 6.9 74 438-517 45-121 (362)
430 3tdw_A Gentamicin resistance p 87.4 0.87 3E-05 42.7 6.3 75 439-519 24-102 (306)
431 3cxl_A N-chimerin; SH2, RHO-GA 85.5 0.12 4.1E-06 51.8 -0.9 60 439-501 147-215 (463)
432 3ats_A Putative uncharacterize 82.6 0.35 1.2E-05 46.5 1.0 79 440-518 26-121 (357)
433 3sg8_A APH(2'')-ID; antibiotic 79.7 1.1 3.8E-05 41.8 3.4 75 439-519 25-105 (304)
434 2q83_A YTAA protein; 2635576, 74.6 4.4 0.00015 38.1 6.1 72 441-517 39-118 (346)
435 2l2t_A Receptor tyrosine-prote 70.1 1.7 5.8E-05 27.0 1.2 14 394-407 29-42 (44)
436 1zyl_A Hypothetical protein YI 67.3 12 0.00043 34.8 7.4 74 441-516 33-113 (328)
437 2pyw_A Uncharacterized protein 59.3 13 0.00044 36.3 6.0 73 439-514 39-122 (420)
438 2ppq_A HSK, HK, homoserine kin 57.0 14 0.00047 34.4 5.6 90 424-516 7-109 (322)
439 1nw1_A Choline kinase (49.2 KD 56.6 8.9 0.0003 37.7 4.3 72 440-517 79-159 (429)
440 2lz0_A Uncharacterized protein 54.7 37 0.0013 25.3 6.5 15 143-157 14-28 (100)
441 2lz0_A Uncharacterized protein 54.2 38 0.0013 25.2 6.6 47 113-160 8-54 (100)
442 3feg_A Choline/ethanolamine ki 49.8 21 0.00073 34.3 5.6 73 440-517 56-137 (379)
443 3csv_A Aminoglycoside phosphot 45.1 42 0.0014 31.1 6.9 77 441-522 25-104 (333)
444 3i1a_A Spectinomycin phosphotr 43.7 34 0.0012 32.1 6.0 68 443-517 32-108 (339)
445 2klu_A T-cell surface glycopro 37.7 19 0.00065 24.3 2.1 10 399-408 31-40 (70)
446 3dxq_A Choline/ethanolamine ki 32.0 29 0.00099 31.8 3.4 71 439-517 23-95 (301)
447 3c5i_A Choline kinase; choline 28.2 41 0.0014 31.9 3.7 72 440-516 39-120 (369)
448 2qg7_A Ethanolamine kinase PV0 25.1 72 0.0025 31.4 4.9 73 440-517 114-188 (458)
449 2l8s_A Integrin alpha-1; trans 23.3 44 0.0015 21.7 1.9 6 387-392 18-23 (54)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-43 Score=386.20 Aligned_cols=343 Identities=33% Similarity=0.546 Sum_probs=292.4
Q ss_pred CCCccEEEccCCcccccCCcc-cccccCCCEEEccccccCC-CCC------------------CccccCccccCCC--CC
Q 040301 19 HQIYWVMDLSSNSFSGHIPNT-FGNLRHLSSLLLTWNNLTT-ESS------------------LADQWSFLSALTN--CR 76 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~-~~~------------------~~~~~~~~~~~~~--l~ 76 (524)
.++|+.|++++|+++|.+|.. |.++++|++|++++|++++ ++. +.+.+| ..+.. ++
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~--~~~~~~~~~ 394 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL--PNLCQNPKN 394 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC--TTTTCSTTC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC--hhhhhcccC
Confidence 356666666666666566554 5666666666666666542 110 011122 33433 67
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
+|++|++++|.+.+.+|..+..+. +|+.|++++|.+++.+|..|+++++|+.|++++|.+.+..|..+..+++|++|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 899999999999888999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 99999999999999999999999999999989999999999999999999999988999999999999999999988766
Q ss_pred CCcC----------------------------------------------------------------------ccCCCC
Q 040301 237 LPSN----------------------------------------------------------------------IQTLKV 246 (524)
Q Consensus 237 ~~~~----------------------------------------------------------------------~~~l~~ 246 (524)
+|.. ++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 6643 334578
Q ss_pred CCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccC
Q 040301 247 LRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325 (524)
Q Consensus 247 L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~ 325 (524)
|+.|++++|++++.. ..++.+++|+.|+|++|++++.+|..++.+++|+.|||++|++++.+|..+..++.|+.+++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 999999999999755 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccccCCCCcCCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 040301 326 NRLEGKILVKGSFKNFSAESFFGNYALCGLPKFRVPPCKQGD 367 (524)
Q Consensus 326 n~l~~~~~~~~~~~~~~~~~~~~n~~lc~~p~~~~~~c~~~~ 367 (524)
|+++|.+|..+.+..+....+.||+.+||.|. ++|....
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~~ 752 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPSN 752 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSCC
T ss_pred CcccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCCc
Confidence 99999999999999999999999999999763 3786443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-40 Score=358.72 Aligned_cols=326 Identities=34% Similarity=0.497 Sum_probs=240.3
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++|+.|++++|++++.+|..|+++++|++|++++|.+++ .+|. ..+.++++|++|++++|.+.+.+|..+..+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG------ELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE------ECCH-HHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC------cCCH-HHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence 567777777777777777777777777777777776652 1220 236677777777777777776666665544
Q ss_pred cc--------------------------cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCe
Q 040301 100 SA--------------------------SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRG 153 (524)
Q Consensus 100 ~~--------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 153 (524)
.. +|+.|++++|.+++.+|..|.++++|+.|++++|++++..|..+..+++|+.
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 22 4555666666666666777777777777777777777777777777777777
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcC
Q 040301 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSL 233 (524)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 233 (524)
|++++|.+++.+|..+..+++|+.|++++|++.+..|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 77777777777777777777778888888777777777777788888888888888777777788888888888888888
Q ss_pred cccCCcCccCCCCCCEEEcCCCcCcccc-c--------------------------------------------------
Q 040301 234 NDSLPSNIQTLKVLRVLDLSRNQLSGDI-S-------------------------------------------------- 262 (524)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-------------------------------------------------- 262 (524)
.+.+|..+..+++|+.|++++|.+++.. .
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 7777877888888888888887766321 1
Q ss_pred --------------------cccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEE
Q 040301 263 --------------------TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFN 322 (524)
Q Consensus 263 --------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~ 322 (524)
.+..+++|+.|+|++|++++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 123356788888888888888888888888888888888888888888888888888888
Q ss_pred ccCCcCccccCCC-CcCCCCCcccccCCCCC
Q 040301 323 ASHNRLEGKILVK-GSFKNFSAESFFGNYAL 352 (524)
Q Consensus 323 l~~n~l~~~~~~~-~~~~~~~~~~~~~n~~l 352 (524)
+++|.++|.+|.. ..+..+..+++.+|...
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 8888888887753 45666777777777543
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-40 Score=337.92 Aligned_cols=333 Identities=21% Similarity=0.207 Sum_probs=295.8
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-+++++.|||++|++++..|..|.++++|++|+|++|.++.+.. ..|.++++|++|+|++|.+....+.
T Consensus 27 p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 27 PEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP--------GAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh--------hhhhCCccCCEEECCCCcCCccCcc
Confidence 44445799999999999998889999999999999999999987643 7899999999999999999987777
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKL 174 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 174 (524)
.|..+. +|+.|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++
T Consensus 99 ~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred cccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 788887 9999999999999999999999999999999999999998999999999999999999999777778999999
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCC
Q 040301 175 MYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254 (524)
Q Consensus 175 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 254 (524)
|+.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 99999999999988888899999999999999988878887777778999999999999865546789999999999999
Q ss_pred CcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 255 NQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 255 n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
|.+++.+ ..+..+++|+.|+|++|++.+..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++.|.+.
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9999877 568899999999999999999889999999999999999999998888888999999999999999998765
Q ss_pred CCCcCCCCCcccccCCCCCCCCC
Q 040301 334 VKGSFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 334 ~~~~~~~~~~~~~~~n~~lc~~p 356 (524)
....+.......+.++...|..|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 338 LLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GHHHHTTTTSSCCTTCCCBEEES
T ss_pred hHhHHhhhhccccCccCceeCCc
Confidence 43222333334555666666543
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-39 Score=333.98 Aligned_cols=333 Identities=20% Similarity=0.212 Sum_probs=234.1
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCC-CCCCccccCccccCCCCCCCCEEEccCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTT-ESSLADQWSFLSALTNCRHLKALSLGSNPLGGIL 92 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 92 (524)
+|. -+++|++|||++|++++..|..|.++++|++|++++|.+.. ++. ..|.++++|++|+|++|.+.+..
T Consensus 25 lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~--------~~~~~l~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 25 VPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN--------NTFRGLSSLIILKLDYNQFLQLE 95 (455)
T ss_dssp CCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT--------TTTTTCTTCCEEECTTCTTCEEC
T ss_pred CCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc--------ccccccccCCEEeCCCCccCccC
Confidence 344 34899999999999998889999999999999999998863 222 67899999999999999999888
Q ss_pred ChhHhcCcccccEEEeccCcccccCCcc--ccCCCCCCeEEcccCcCcccCCcc-ccCCCCCCeEecccCcccccCCccc
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGNIPQE--IGNLRGLTLLSLFNNDLNGTISPT-MGRLKQLRGLSLKYNNLEGSIPYDL 169 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~ 169 (524)
|..|..+. +|++|++++|.+++..+.. |.++++|++|++++|++.+..|.. +..+++|++|++++|.+++..+..+
T Consensus 96 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 96 TGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred hhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 99999998 9999999999998755555 899999999999999999887776 8999999999999999998888777
Q ss_pred cCC--CCCCEEEccCCcccccCCcc--------ccCCCCCCEEEccCCcCCCccChhcc---------------------
Q 040301 170 CHL--KLMYGIRLTGNKLSGHIPPC--------LASLTSLRELHLGSNKLTSSIPSSLW--------------------- 218 (524)
Q Consensus 170 ~~l--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------- 218 (524)
..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+.
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 665 44555555555554322221 11334455555555544432222211
Q ss_pred ------------------CCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCc
Q 040301 219 ------------------SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQ 279 (524)
Q Consensus 219 ------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~ 279 (524)
..++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+ ..+..+++|+.|+|++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 1145666666666666656666666666666666666666554 455666666666666666
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCC-CcCCCCCcccccCCCCCCCCC
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVK-GSFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~~~~~~~~~~~~~n~~lc~~p 356 (524)
+.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+.. ..+..+..+++.+|+..|..|
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 66555666666666666666666666555666666666666666666666533321 344555566666666555544
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4e-37 Score=327.26 Aligned_cols=165 Identities=21% Similarity=0.222 Sum_probs=100.3
Q ss_pred cccCCCCCCEEEccCCcCCCccC-hhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc--ccccccccC
Q 040301 192 CLASLTSLRELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG--DISTIGALV 268 (524)
Q Consensus 192 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~l~ 268 (524)
.+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ .+..+..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 34444555555555555554444 455556666666666666665556666666666666666666665 235566666
Q ss_pred CCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCC-CCCccccc
Q 040301 269 DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFK-NFSAESFF 347 (524)
Q Consensus 269 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~-~~~~~~~~ 347 (524)
+|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++........+. .+..+++.
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEcc
Confidence 67777777777666666666667777777777777766666666667777777777776664332222332 35666666
Q ss_pred CCCCCCCCC
Q 040301 348 GNYALCGLP 356 (524)
Q Consensus 348 ~n~~lc~~p 356 (524)
+|+..|..+
T Consensus 554 ~N~~~c~c~ 562 (606)
T 3vq2_A 554 NNSVACICE 562 (606)
T ss_dssp SCCCCCSST
T ss_pred CCCcccCCc
Confidence 776666533
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-37 Score=314.95 Aligned_cols=317 Identities=19% Similarity=0.199 Sum_probs=272.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhHhcCc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVIGNFS 100 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~ 100 (524)
-+.++.++++++ .+|. + .++|++|+|++|.++++.. ..+.++++|++|++++|.+.+. .+..|..+.
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNE--------TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECT--------TTTSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCCh--------hHhccCccccEEECcCCcccceECcccccccc
Confidence 457899999998 7776 3 3789999999999987643 7899999999999999999755 467788888
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCc--cccCCCCCCeEecccCcccccCCcc-ccCCCCCCE
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISP--TMGRLKQLRGLSLKYNNLEGSIPYD-LCHLKLMYG 177 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~ 177 (524)
+|++|++++|.+++..|..|+++++|++|++++|++++..+. .+..+++|++|++++|.+++..|.. +..+++|+.
T Consensus 80 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 80 -SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp -TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred -cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 999999999999999999999999999999999999875444 4899999999999999999887876 899999999
Q ss_pred EEccCCcccccCCccccCC--CCCCEEEccCCcCCCccChh--------ccCCCCCCEEEcCCCcCcccCCcCcc-----
Q 040301 178 IRLTGNKLSGHIPPCLASL--TSLRELHLGSNKLTSSIPSS--------LWSLEYILMINLSSNSLNDSLPSNIQ----- 242 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~----- 242 (524)
|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..|..+.
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 9999999998888888766 68999999999998654333 33568899999999988754333221
Q ss_pred ----------------------------------CCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCccc
Q 040301 243 ----------------------------------TLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPES 287 (524)
Q Consensus 243 ----------------------------------~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 287 (524)
..++|+.|++++|.+.+.. ..+..+++|+.|++++|++.+..|..
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 1268999999999998865 67889999999999999999888989
Q ss_pred ccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCCCC
Q 040301 288 VGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGNYA 351 (524)
Q Consensus 288 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n~~ 351 (524)
+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+. ...+..+..+++.+|..
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 99999999999999999988899999999999999999999887554 35677888888888753
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=312.25 Aligned_cols=323 Identities=20% Similarity=0.166 Sum_probs=293.0
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.-+.++.++++++ .+|..+. +++++|+|++|+++.+.. ..|.++++|++|+|++|.+.+..|..|..+.
T Consensus 12 ~~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 12 QDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQ--------DEFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp TTTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECT--------TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECH--------hHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 3468999999998 7887764 589999999999988754 7889999999999999999998899999998
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|.+....+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++
T Consensus 81 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 81 -NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp -TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred -cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 9999999999999777778999999999999999999998999999999999999999999888999999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+++.
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 99999977777899999999999999999987778899999999999999988777777777777999999999999988
Q ss_pred c-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcC
Q 040301 261 I-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSF 338 (524)
Q Consensus 261 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~ 338 (524)
+ ..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+. ...+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 7 5788999999999999999988888899999999999999999998899999999999999999999875443 2445
Q ss_pred CCCCcccccCCCCCCCC
Q 040301 339 KNFSAESFFGNYALCGL 355 (524)
Q Consensus 339 ~~~~~~~~~~n~~lc~~ 355 (524)
..+..+++.+|+..|..
T Consensus 320 ~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 320 GNLETLILDSNPLACDC 336 (477)
T ss_dssp GGCCEEECCSSCEECSG
T ss_pred cccCEEEccCCCccCcc
Confidence 67888999999988863
No 8
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-36 Score=318.08 Aligned_cols=323 Identities=20% Similarity=0.196 Sum_probs=221.1
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
+|..-+++++.||+++|++++..|..|.++++|++|+|++|+++++.. ..|.++++|++||+++|.++. +|
T Consensus 46 ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~-lp 116 (562)
T 3a79_B 46 VPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--------HVFLFNQDLEYLDVSHNRLQN-IS 116 (562)
T ss_dssp CCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--------TTTTTCTTCCEEECTTSCCCE-EC
T ss_pred CCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--------HHhCCCCCCCEEECCCCcCCc-cC
Confidence 344334899999999999998888899999999999999999987643 778899999999999999984 44
Q ss_pred hhHhcCcccccEEEeccCcccc-cCCccccCCCCCCeEEcccCcCcccCCccccCCCCC--CeEecccCcc--cccCCcc
Q 040301 94 PVIGNFSASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQL--RGLSLKYNNL--EGSIPYD 168 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~ 168 (524)
.. .+. +|++|++++|.+++ ..|..|+++++|++|++++|++.+. .+..+++| ++|++++|.+ ++..|..
T Consensus 117 ~~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 117 CC--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp SC--CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred cc--ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccc
Confidence 44 566 99999999999987 4568899999999999999998753 34455555 8888888888 5555555
Q ss_pred ccCCC---------------------------------------------------------------------------
Q 040301 169 LCHLK--------------------------------------------------------------------------- 173 (524)
Q Consensus 169 ~~~l~--------------------------------------------------------------------------- 173 (524)
+..+.
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 54432
Q ss_pred ------CCCEEEccCCcccccCCccc-----------------------------------------------------c
Q 040301 174 ------LMYGIRLTGNKLSGHIPPCL-----------------------------------------------------A 194 (524)
Q Consensus 174 ------~L~~L~l~~n~l~~~~~~~~-----------------------------------------------------~ 194 (524)
+|++|++++|.+.+.+|..+ .
T Consensus 271 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 56666666666665555543 4
Q ss_pred CCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc--CCcCccCCCCCCEEEcCCCcCcc-cc-ccccccCCC
Q 040301 195 SLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS--LPSNIQTLKVLRVLDLSRNQLSG-DI-STIGALVDL 270 (524)
Q Consensus 195 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~l~~L 270 (524)
.+++|++|++++|.+.+..|..+..+++|+.|++++|++.+. +|..+..+++|+.|++++|.+++ .+ ..+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 455666666666666655566666666666666666666542 23445666666666666666655 33 335556666
Q ss_pred CEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCC
Q 040301 271 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGN 349 (524)
Q Consensus 271 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n 349 (524)
+.|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|.++...+. ...+..+..+++.+|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 6666666666554444332 46666666666666 4555555666666666666666642222 234455555666666
Q ss_pred CCCCC
Q 040301 350 YALCG 354 (524)
Q Consensus 350 ~~lc~ 354 (524)
+..|.
T Consensus 508 ~~~c~ 512 (562)
T 3a79_B 508 PWDCT 512 (562)
T ss_dssp CBCCC
T ss_pred CcCCC
Confidence 65553
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8e-37 Score=325.37 Aligned_cols=320 Identities=18% Similarity=0.244 Sum_probs=280.0
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccc-cCCCCCCccccCccccCCCC------CCCCEEEccCCCCCC
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNN-LTTESSLADQWSFLSALTNC------RHLKALSLGSNPLGG 90 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~l------~~L~~L~l~~n~l~~ 90 (524)
..++|++|++++|++.+.+|..|+++++|++|++++|+ +++. .+| ..++++ ++|++|++++|.++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-----~lp--~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE-----QLK--DDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH-----HHH--HHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc-----cch--HHHHhhhccccCCCCCEEECCCCcCC-
Confidence 35899999999999999999999999999999999998 7640 233 555554 89999999999999
Q ss_pred CCCh--hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCC-CCeEecccCcccccCCc
Q 040301 91 ILPP--VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQ-LRGLSLKYNNLEGSIPY 167 (524)
Q Consensus 91 ~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~ 167 (524)
.+|. .+..+. +|+.|++++|.+.+.+| .|+++++|+.|++++|+++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus 319 ~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 7787 899998 99999999999998999 8999999999999999999 77888999999 999999999999 7888
Q ss_pred cccCCC--CCCEEEccCCcccccCCcccc-------CCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCC
Q 040301 168 DLCHLK--LMYGIRLTGNKLSGHIPPCLA-------SLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP 238 (524)
Q Consensus 168 ~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 238 (524)
.+..++ +|+.|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-CC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-cC
Confidence 887755 899999999999998888888 78899999999999995544556779999999999999984 55
Q ss_pred c-CccCCC-------CCCEEEcCCCcCcccccccc--ccCCCCEEEccCCcccCCCcccccCCCCCCEEeC------CCC
Q 040301 239 S-NIQTLK-------VLRVLDLSRNQLSGDISTIG--ALVDLETLSLASNQFQGPIPESVGSLISLESLDL------SGN 302 (524)
Q Consensus 239 ~-~~~~l~-------~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l------~~N 302 (524)
. .+.... +|+.|++++|.++..+..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 4 343333 99999999999998887776 89999999999999997 8999999999999999 568
Q ss_pred cCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCCCCC
Q 040301 303 NLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNYALC 353 (524)
Q Consensus 303 ~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~~lc 353 (524)
++.+.+|..+..+++|+.|++++|.+ +.+|.. ....+..+++.+|+..|
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 88889999999999999999999999 556543 33678888888887655
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.9e-36 Score=318.88 Aligned_cols=308 Identities=21% Similarity=0.234 Sum_probs=221.5
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
+|..-+++++.||+++|++++..|..|.++++|++|+|++|+++.+.. ..|.++++|++|+|++|.+.+..|
T Consensus 27 iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 27 IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE--------DTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp CCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT--------TTTTTCTTCCEEECTTCCCSEECT
T ss_pred CcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh--------hhccCccccCeeeCCCCcccccCh
Confidence 344445689999999999998889999999999999999999987643 788999999999999999998889
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCC
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLK 173 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 173 (524)
..|..+. +|++|++++|.+++..+..|+++++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 99 ~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 9999998 999999999999987788899999999999999999976555666699999999999999988788888888
Q ss_pred CCC--EEEccCCcccccCCccccCC---------------------------------------------------CCCC
Q 040301 174 LMY--GIRLTGNKLSGHIPPCLASL---------------------------------------------------TSLR 200 (524)
Q Consensus 174 ~L~--~L~l~~n~l~~~~~~~~~~l---------------------------------------------------~~L~ 200 (524)
+|+ .|++++|.+.+..|..+... .+|+
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888 78888888776555433210 0345
Q ss_pred EEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCc
Q 040301 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQ 279 (524)
Q Consensus 201 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~ 279 (524)
.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+.+ ..+..+++|+.|++++|.
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 5555555555554555566666666666666665 35555566666666666666655543 345555555555555555
Q ss_pred ccCCCcc-cccCCCCCCEEeCCCCcCCCCC--cccccCCCCCCeEEccCCcCccc
Q 040301 280 FQGPIPE-SVGSLISLESLDLSGNNLSGKI--PKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 280 l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
+.+.+|. .+..+++|+.|++++|.+++.. +..+..+++|+.+++++|.+.+.
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 5533332 2455555555555555555433 44455555555555555555443
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=314.83 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=105.8
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++|+.||+++|++++..|..|.++++|++|+|++|+++++.. ..|.++++|++|||++|.++. +|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI--------SVFKFNQELEYLDLSHNKLVK-ISCH--PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG--------GGGTTCTTCCEEECCSSCCCE-EECC--CC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh--------HHhhcccCCCEEecCCCceee-cCcc--cc
Confidence 889999999999987777888999999999999998876532 678888999999999998884 4444 56
Q ss_pred cccccEEEeccCcccc-cCCccccCCCCCCeEEcccCcCcccCCccccCCCCC--CeEecccCcc--cccCCccccC
Q 040301 100 SASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQL--RGLSLKYNNL--EGSIPYDLCH 171 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~ 171 (524)
. +|++|++++|.+++ .+|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 90 ~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 90 V-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp C-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred C-CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc
Confidence 5 89999999998886 467888889999999998888874 345555666 7777777766 4444444433
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-36 Score=319.84 Aligned_cols=303 Identities=23% Similarity=0.232 Sum_probs=277.1
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+|+.|++++|++++..+..|+++++|++|++++|+++.++ ..+.++++|++|++++|.+.+..|..+..++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp---------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP---------SGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC---------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC---------hhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 8999999999999888888999999999999999998654 6788999999999999999988888999998
Q ss_pred ccccEEEeccCcccccCCc-cccCCCCCCeEEcccCcCcccC--CccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 101 ASFQNFYAFNCKLKGNIPQ-EIGNLRGLTLLSLFNNDLNGTI--SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
+|+.|++++|.+.+.+|. .+.++++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 326 -~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 326 -SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp -TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred -cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 999999999999866655 4899999999999999999776 778999999999999999999888999999999999
Q ss_pred EEccCCcccccCCc-cccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc---CCcCccCCCCCCEEEcC
Q 040301 178 IRLTGNKLSGHIPP-CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS---LPSNIQTLKVLRVLDLS 253 (524)
Q Consensus 178 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~ 253 (524)
|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 99999999877654 488999999999999999988889999999999999999999762 33568899999999999
Q ss_pred CCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcccc
Q 040301 254 RNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332 (524)
Q Consensus 254 ~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 332 (524)
+|.+++.+ ..+..+++|+.|+|++|++++..|..+..+++| .|++++|++++..|..+..+++|+.+++++|++.|.+
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 99999875 778999999999999999999999999999999 9999999999888888999999999999999999877
Q ss_pred CC
Q 040301 333 LV 334 (524)
Q Consensus 333 ~~ 334 (524)
+.
T Consensus 564 ~~ 565 (606)
T 3t6q_A 564 SN 565 (606)
T ss_dssp GG
T ss_pred Cc
Confidence 53
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.7e-36 Score=314.70 Aligned_cols=140 Identities=24% Similarity=0.260 Sum_probs=94.8
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-+++++.||+++|++++..+..|.++++|++|+|++|+++.++. ..|.++++|++|+|++|.+.+..|.
T Consensus 23 p~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--------~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 23 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp CSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT--------TTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc--------ccccCchhCCEEeCcCCcCCccCHh
Confidence 33334678888888888887777778888888888888887776543 5566777777777777777766666
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc-CCccccCCCCCCeEecccCcccc
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-ISPTMGRLKQLRGLSLKYNNLEG 163 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~ 163 (524)
.|..+. +|+.|++++|.+.+..+..|+++++|++|++++|.+.+. .|..++++++|++|++++|.+++
T Consensus 95 ~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 95 AFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred hhcCcc-ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 666666 677777777766655444566666666666666666652 46666666666666666665543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-36 Score=322.24 Aligned_cols=319 Identities=20% Similarity=0.238 Sum_probs=282.0
Q ss_pred CCCCccEEEccCCccccc-----------------CCcccc--cccCCCEEEccccccCCCCCCccccCccccCCCCCCC
Q 040301 18 PHQIYWVMDLSSNSFSGH-----------------IPNTFG--NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHL 78 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L 78 (524)
..++|++|||++|++++. +|..++ ++++|++|+|++|.+.+ .+| ..+.++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~------~~p--~~l~~l~~L 275 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT------KLP--TFLKALPEM 275 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS------SCC--TTTTTCSSC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc------cCh--HHHhcCCCC
Confidence 458999999999999986 999999 99999999999999865 345 889999999
Q ss_pred CEEEccCCC-CCC-CCChhHhcC------cccccEEEeccCcccccCCc--cccCCCCCCeEEcccCcCcccCCccccCC
Q 040301 79 KALSLGSNP-LGG-ILPPVIGNF------SASFQNFYAFNCKLKGNIPQ--EIGNLRGLTLLSLFNNDLNGTISPTMGRL 148 (524)
Q Consensus 79 ~~L~l~~n~-l~~-~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 148 (524)
++|++++|+ +++ .+|..+..+ . +|+.|++++|.++ .+|. .|+++++|+.|++++|++.+.+| .+..+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 999999999 998 889998886 6 9999999999999 8888 89999999999999999998888 89999
Q ss_pred CCCCeEecccCcccccCCccccCCCC-CCEEEccCCcccccCCccccCCC--CCCEEEccCCcCCCccChhcc-------
Q 040301 149 KQLRGLSLKYNNLEGSIPYDLCHLKL-MYGIRLTGNKLSGHIPPCLASLT--SLRELHLGSNKLTSSIPSSLW------- 218 (524)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~------- 218 (524)
++|++|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..+. +|+.|++++|.+.+..|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 99999999999999 88989999999 999999999998 7788777655 899999999999998888888
Q ss_pred CCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccccc-ccc-------cCCCCEEEccCCcccCCCccccc-
Q 040301 219 SLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDIST-IGA-------LVDLETLSLASNQFQGPIPESVG- 289 (524)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~-------l~~L~~L~L~~N~l~~~~~~~~~- 289 (524)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++..+.. +.. +++|+.|+|++|+++ .+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 509 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence 788999999999999954444566799999999999999977643 332 238999999999999 6888887
Q ss_pred -CCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc------CCcCccccCC-CCcCCCCCcccccCCCC
Q 040301 290 -SLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS------HNRLEGKILV-KGSFKNFSAESFFGNYA 351 (524)
Q Consensus 290 -~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~------~n~l~~~~~~-~~~~~~~~~~~~~~n~~ 351 (524)
.+++|+.|++++|++++ +|..+..+++|+.|+++ +|.+.+.+|. ...+..+..+++.+|..
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 99999999999999997 89999999999999994 5667776664 35567788888888865
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-36 Score=314.77 Aligned_cols=319 Identities=20% Similarity=0.236 Sum_probs=230.3
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
.++|++||+++|++++..|..|.++++|++|++++|+++.+.. ..|.++++|++|++++|.+.+..|..|..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--------DAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--------hhccccccCCEEECCCCccCccCHHHhcc
Confidence 4799999999999998889999999999999999999987653 67899999999999999999888888999
Q ss_pred CcccccEEEeccCcccc-cCCccccCCCCCCeEEcccCc-CcccCCccccCCCCCCeEecccCcccccCCccccC-----
Q 040301 99 FSASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNND-LNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCH----- 171 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~----- 171 (524)
+. +|++|++++|.+++ ..|..|+++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..
T Consensus 97 l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 98 99999999999986 467789999999999999998 44444568899999999999999998877776654
Q ss_pred -------------------CCCCCEEEccCCcccccC--Ccc--------------------------------------
Q 040301 172 -------------------LKLMYGIRLTGNKLSGHI--PPC-------------------------------------- 192 (524)
Q Consensus 172 -------------------l~~L~~L~l~~n~l~~~~--~~~-------------------------------------- 192 (524)
+++|+.|++++|++.+.. +..
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 455666666666655421 000
Q ss_pred --------------------------------------------------ccCCCCCCEEEccCCcCCCccChhc-cCCC
Q 040301 193 --------------------------------------------------LASLTSLRELHLGSNKLTSSIPSSL-WSLE 221 (524)
Q Consensus 193 --------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~ 221 (524)
+...++|+.|++++|.+. .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 000123444444444443 334333 4577
Q ss_pred CCCEEEcCCCcCcccCC---cCccCCCCCCEEEcCCCcCcccc---ccccccCCCCEEEccCCcccCCCcccccCCCCCC
Q 040301 222 YILMINLSSNSLNDSLP---SNIQTLKVLRVLDLSRNQLSGDI---STIGALVDLETLSLASNQFQGPIPESVGSLISLE 295 (524)
Q Consensus 222 ~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 295 (524)
+|+.|++++|.+.+..| ..++.+++|++|++++|.+++.+ ..+..+++|+.|++++|+++ .+|..+..+++|+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~ 413 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc
Confidence 77777777777766442 23566777777777777776554 23666777777777777776 4666666666666
Q ss_pred EEeCCCCcCCCCCccc------------------ccCCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCC
Q 040301 296 SLDLSGNNLSGKIPKS------------------LETLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNY 350 (524)
Q Consensus 296 ~L~l~~N~l~~~~~~~------------------~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~ 350 (524)
.|++++|+++. +|.. +..+++|+.|++++|.++ .+|....+..+..+++.+|.
T Consensus 414 ~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 414 FLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp EEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSC
T ss_pred EEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCc
Confidence 66666666652 2221 125778888888888887 34544456667777777764
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=329.42 Aligned_cols=233 Identities=22% Similarity=0.237 Sum_probs=133.1
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC-hhHh
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP-PVIG 97 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 97 (524)
.++|+.|+|++|++++..|..|+++++|++|+|++|.+++.. |....+.++++|++|||++|.+.+..+ ..|.
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV------LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC------STTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc------ccCccccccCCCCEEECCCCcccccccchhHh
Confidence 467888888888888777888888888888888888876521 101336777777888888777776544 5677
Q ss_pred cCcccccEEEeccCcccccCCccccCC--CC------------------------------CCeEEcccCcCcccCCccc
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNL--RG------------------------------LTLLSLFNNDLNGTISPTM 145 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~------------------------------L~~L~l~~n~l~~~~~~~~ 145 (524)
.++ +|++|++++|.+++..+..+..+ ++ |+.|++++|.+++..+..+
T Consensus 146 ~L~-~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 146 KLN-SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp TCS-SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred hCC-CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 776 77777777777765555444333 22 3333333332222111111
Q ss_pred c------------------------------------C--CCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccc
Q 040301 146 G------------------------------------R--LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 146 ~------------------------------------~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
. . .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 0 0 1344455555555544444555555555555555555555
Q ss_pred cCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 188 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 55555555555555555555555444555555555555555555555444444555555555555554443
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-35 Score=297.70 Aligned_cols=295 Identities=21% Similarity=0.212 Sum_probs=205.9
Q ss_pred cCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 17 IPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 17 ~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
...++++.|++++|.++...+..|.++++|++|++++|.++.++. ..+.++++|++|++++|.+.+..|..+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh--------hhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 345899999999999995555557899999999999999987654 678999999999999999998888889
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 176 (524)
..+. +|+.|++++|.+....+..|.++++|++|++++|++.+..+..+..+++|++|++++|.+++. .+..+++|+
T Consensus 114 ~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 189 (390)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCS
T ss_pred cCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccc
Confidence 9988 999999999999966666679999999999999999988888899999999999999999854 245566666
Q ss_pred EEEccCCccccc------------------CCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCC
Q 040301 177 GIRLTGNKLSGH------------------IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP 238 (524)
Q Consensus 177 ~L~l~~n~l~~~------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 238 (524)
.|++++|.+.+. .|. ...++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred eeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 666666665431 111 1123455555555555432 345555555555665555555555
Q ss_pred cCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 040301 239 SNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318 (524)
Q Consensus 239 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 318 (524)
..+..+++|+.|++++|.+++.+..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++.. + +..+++|
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC
Confidence 5555555555666655555555444455555555666555555 3444455555555666665555532 2 4445555
Q ss_pred CeEEccCCcCccc
Q 040301 319 KQFNASHNRLEGK 331 (524)
Q Consensus 319 ~~l~l~~n~l~~~ 331 (524)
+.+++++|++.+.
T Consensus 342 ~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 342 KNLTLSHNDWDCN 354 (390)
T ss_dssp SEEECCSSCEEHH
T ss_pred CEEEcCCCCccch
Confidence 5566665555543
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.5e-35 Score=314.98 Aligned_cols=336 Identities=23% Similarity=0.250 Sum_probs=260.2
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCC--Ccc---------------------ccCc--cccCCC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESS--LAD---------------------QWSF--LSALTN 74 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~--~~~---------------------~~~~--~~~~~~ 74 (524)
++|+.||+++|++++..|..|+++++|++|++++|.++.... +.+ .+|. ...+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 458888888888887777788888888888888887765421 000 0110 014455
Q ss_pred CCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccc--cCCccccCC--CCCCeEEcccCcCcccCCccccCCCC
Q 040301 75 CRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKG--NIPQEIGNL--RGLTLLSLFNNDLNGTISPTMGRLKQ 150 (524)
Q Consensus 75 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~ 150 (524)
+++|++|++++|.+.+..+..|..+. +|+.|++++|.+.. .....|..+ +.|+.|++++|++++..|..+..+++
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 66666666666666666666666665 66666666665422 222223322 46777777778888777888888999
Q ss_pred CCeEecccCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCC--CccChhccCCCCCCEEE
Q 040301 151 LRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT--SSIPSSLWSLEYILMIN 227 (524)
Q Consensus 151 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~ 227 (524)
|+.|++++|.+++.+| ..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+. +..|..+..+++|+.|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 9999999999887665 67888999999999999988888888888999999999998876 46788899999999999
Q ss_pred cCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc---------ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEe
Q 040301 228 LSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI---------STIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 298 (524)
Q Consensus 228 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 298 (524)
+++|.+.+..+..+..+++|++|++++|.+++.. ..+..+++|+.|+|++|+++...+..|..+++|+.|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 9999999877788999999999999999998753 2378889999999999999965556789999999999
Q ss_pred CCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCC-C-cCCCCCcccccCCCCCCCCC
Q 040301 299 LSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVK-G-SFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 299 l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~-~~~~~~~~~~~~n~~lc~~p 356 (524)
+++|++++..+..+..+++|+.+++++|.+++..+.. + .+..+..+++.+|++.|+.+
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999777777889999999999999998755432 2 46778889999999998755
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-35 Score=311.67 Aligned_cols=191 Identities=21% Similarity=0.213 Sum_probs=165.1
Q ss_pred CccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCCccChhccCC
Q 040301 142 SPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIP-PCLASLTSLRELHLGSNKLTSSIPSSLWSL 220 (524)
Q Consensus 142 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 220 (524)
+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 334444555555555555555 245677788889999999999887766 678999999999999999998889999999
Q ss_pred CCCCEEEcCCCcCcc-cCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEe
Q 040301 221 EYILMINLSSNSLND-SLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 298 (524)
Q Consensus 221 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 298 (524)
++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++.+ ..+..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 999999999999987 47889999999999999999999876 6789999999999999999998899999999999999
Q ss_pred CCCCcCCCCCcccccCCC-CCCeEEccCCcCccccCC
Q 040301 299 LSGNNLSGKIPKSLETLS-HLKQFNASHNRLEGKILV 334 (524)
Q Consensus 299 l~~N~l~~~~~~~~~~l~-~L~~l~l~~n~l~~~~~~ 334 (524)
+++|+++ .+|..+..++ +|+.+++++|++.|.++.
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999 6777788887 599999999999987765
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.1e-35 Score=311.32 Aligned_cols=318 Identities=21% Similarity=0.200 Sum_probs=245.0
Q ss_pred cCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 17 IPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 17 ~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
+..++++.|++++|.++...+..|.++++|++|+|++|.+++++. ..|.++++|++|+|++|.+.+..|..|
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--------YAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh--------HHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 345789999999999996666678899999999999999987653 688899999999999999998888888
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 176 (524)
..++ +|+.|++++|.+++..+..|+++++|+.|++++|.+++..|..|..+++|+.|++++|.+++.. +..+++|+
T Consensus 120 ~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~ 195 (597)
T 3oja_B 120 QNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLF 195 (597)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCS
T ss_pred cCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhh
Confidence 9988 9999999999999776777899999999999999999888888999999999999999998643 34455555
Q ss_pred EEEccCCccccc------------------CCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCC
Q 040301 177 GIRLTGNKLSGH------------------IPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP 238 (524)
Q Consensus 177 ~L~l~~n~l~~~------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 238 (524)
.|++++|.+.+. ++.. ..++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+..|
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred hhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 555555554421 1111 12467777777777764 3667778888888888888887777
Q ss_pred cCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 040301 239 SNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHL 318 (524)
Q Consensus 239 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 318 (524)
..+..+++|+.|++++|.+++.+..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|.+++. + +..+++|
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 7788888888888888888777766677788888888888887 5677777788888888888888744 2 5667788
Q ss_pred CeEEccCCcCccccCCCCcCCCCCcccccCCCCCCCC
Q 040301 319 KQFNASHNRLEGKILVKGSFKNFSAESFFGNYALCGL 355 (524)
Q Consensus 319 ~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~~lc~~ 355 (524)
+.|++++|++.|.+.. ..+..+....+.++...|+.
T Consensus 348 ~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 348 KNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred CEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 8888888888775422 23444444555566666654
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=322.08 Aligned_cols=307 Identities=21% Similarity=0.246 Sum_probs=266.7
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccC-CCCCCccccCccccCCCCCCCCEEEccCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLT-TESSLADQWSFLSALTNCRHLKALSLGSNPLGGIL 92 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 92 (524)
+|. -+++++.|||++|++++..|..|.++++|++|+|++|... .++ | ..|.++++|++|+|++|.+.+..
T Consensus 19 vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~------~--~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 19 VPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID------K--EAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC------T--TTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC------H--HHhcCCCCCCEEECCCCcCcccC
Confidence 355 5689999999999999999999999999999999999543 221 2 78999999999999999999999
Q ss_pred ChhHhcCcccccEEEeccCcccccCCcc--ccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccCcccccCCccc
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGNIPQE--IGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYNNLEGSIPYDL 169 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~ 169 (524)
|..|..+. +|++|++++|.+++..|.. |.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+
T Consensus 90 p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp TTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred HhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 99999998 9999999999999877665 8999999999999999987755 579999999999999999998888888
Q ss_pred cCC--CCCCEEEccCCcccccCCccccCCCC------CCEEEccCCcCCCccChhccC----------------------
Q 040301 170 CHL--KLMYGIRLTGNKLSGHIPPCLASLTS------LRELHLGSNKLTSSIPSSLWS---------------------- 219 (524)
Q Consensus 170 ~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~---------------------- 219 (524)
..+ ++|+.|++++|.+.+..|..+..+++ |+.|++++|.+.+..+..+..
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 877 89999999999998877776666555 899999999776554433321
Q ss_pred ----------------CCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccC
Q 040301 220 ----------------LEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 220 ----------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~ 282 (524)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.. ..+..+++|+.|+|++|++.+
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 267999999999998888888999999999999999998775 678889999999999999988
Q ss_pred CCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcc
Q 040301 283 PIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 283 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 330 (524)
..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 888889999999999999999988777888899999999999998875
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-35 Score=318.60 Aligned_cols=321 Identities=19% Similarity=0.269 Sum_probs=232.3
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEc-cccccCCCC-------------------------------------
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLL-TWNNLTTES------------------------------------- 60 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l-~~n~l~~~~------------------------------------- 60 (524)
..+++.|+|++|+++|.+|..|+++++|++|+| ++|.+.+..
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 367999999999999999999999999999999 777653331
Q ss_pred ----------------------------------CCccccCccccCCCCCCCCEEEccCCCCCC----------------
Q 040301 61 ----------------------------------SLADQWSFLSALTNCRHLKALSLGSNPLGG---------------- 90 (524)
Q Consensus 61 ----------------------------------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------- 90 (524)
.+.+ +| ..++++++|++|+|++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP--~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS--KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC--GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hh--HHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 1111 44 778888999999999999887
Q ss_pred -CCChhHh--cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCc-Ccc-cCCccccCC-------CCCCeEeccc
Q 040301 91 -ILPPVIG--NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNND-LNG-TISPTMGRL-------KQLRGLSLKY 158 (524)
Q Consensus 91 -~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~ 158 (524)
.+|..++ .+. +|+.|++++|.+.+.+|..|+++++|+.|++++|+ +++ .+|..++.+ ++|+.|++++
T Consensus 479 g~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 479 QYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred ccCChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 2777766 887 89999999998888888888889999999998887 776 566544444 4888888888
Q ss_pred CcccccCCc--cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCC-CCEEEcCCCcCcc
Q 040301 159 NNLEGSIPY--DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEY-ILMINLSSNSLND 235 (524)
Q Consensus 159 n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~ 235 (524)
|.++ .+|. .+..+++|+.|++++|++. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+.
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 8887 7777 7888888888888888877 566 6777777777777777777 66666777777 777777777766
Q ss_pred cCCcCccCCC-------------------------------CCCEEEcCCCcCcccccc-ccccCCCCEEEccCCcccCC
Q 040301 236 SLPSNIQTLK-------------------------------VLRVLDLSRNQLSGDIST-IGALVDLETLSLASNQFQGP 283 (524)
Q Consensus 236 ~~~~~~~~l~-------------------------------~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~L~~N~l~~~ 283 (524)
.+|..+..++ +|+.|++++|.+...+.. +..+++|+.|+|++|++. .
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-c
Confidence 4554443332 444555555555544422 235678888888888887 4
Q ss_pred CcccccCC--------CCCCEEeCCCCcCCCCCccccc--CCCCCCeEEccCCcCccccCCCCcCCCCCcccccCCC
Q 040301 284 IPESVGSL--------ISLESLDLSGNNLSGKIPKSLE--TLSHLKQFNASHNRLEGKILVKGSFKNFSAESFFGNY 350 (524)
Q Consensus 284 ~~~~~~~l--------~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~n~ 350 (524)
+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+++.......+..+..+++.+|.
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 55443322 27888888888888 6677776 7888888888888887732233455666666665543
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.7e-35 Score=316.06 Aligned_cols=318 Identities=21% Similarity=0.265 Sum_probs=232.9
Q ss_pred CCCCccEEEccCCcccc-----------------cCCcccc--cccCCCEEEccccccCCCCCCccccCccccCCCCCCC
Q 040301 18 PHQIYWVMDLSSNSFSG-----------------HIPNTFG--NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHL 78 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L 78 (524)
..++|+.|+|++|++++ .+|..++ ++++|++|+|++|.+.+ .+| ..+.++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~------~iP--~~l~~L~~L 517 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT------QLP--DFLYDLPEL 517 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC------SCC--GGGGGCSSC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc------cCh--HHHhCCCCC
Confidence 34799999999999998 3888887 99999999999998754 344 788899999
Q ss_pred CEEEccCCC-CCC-CCChhHhcCc------ccccEEEeccCcccccCCc--cccCCCCCCeEEcccCcCcccCCccccCC
Q 040301 79 KALSLGSNP-LGG-ILPPVIGNFS------ASFQNFYAFNCKLKGNIPQ--EIGNLRGLTLLSLFNNDLNGTISPTMGRL 148 (524)
Q Consensus 79 ~~L~l~~n~-l~~-~~~~~~~~~~------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 148 (524)
++|+|++|+ +++ .+|..+..+. ++|+.|++++|.+. .+|. .|+++++|+.|++++|+++ .+| .++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999998 887 7887776652 37999999999998 7887 8999999999999999998 666 88899
Q ss_pred CCCCeEecccCcccccCCccccCCCC-CCEEEccCCcccccCCccccCCCC--CCEEEccCCcCCCccChhc---c--CC
Q 040301 149 KQLRGLSLKYNNLEGSIPYDLCHLKL-MYGIRLTGNKLSGHIPPCLASLTS--LRELHLGSNKLTSSIPSSL---W--SL 220 (524)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l 220 (524)
++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... . .+
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 99999999999998 78888888888 999999999988 67776665543 7788888887776544322 1 23
Q ss_pred CCCCEEEcCCCcCcccCCcCc-cCCCCCCEEEcCCCcCccccccccc--------cCCCCEEEccCCcccCCCccccc--
Q 040301 221 EYILMINLSSNSLNDSLPSNI-QTLKVLRVLDLSRNQLSGDISTIGA--------LVDLETLSLASNQFQGPIPESVG-- 289 (524)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~-- 289 (524)
++|+.|++++|.+.. +|..+ ..+++|+.|++++|.++..+..+.. +++|+.|+|++|+++ .+|..+.
T Consensus 673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 467777777777763 44433 4666777777777776655532221 226777777777776 5566665
Q ss_pred CCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccC------CcCccccCC-CCcCCCCCcccccCCCC
Q 040301 290 SLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH------NRLEGKILV-KGSFKNFSAESFFGNYA 351 (524)
Q Consensus 290 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~------n~l~~~~~~-~~~~~~~~~~~~~~n~~ 351 (524)
.+++|+.|+|++|++++ +|..+..+++|+.|++++ |.+.+.+|. ...+..+..+++.+|..
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 66777777777777765 566666777777777655 445544443 23455556666666643
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=302.65 Aligned_cols=318 Identities=19% Similarity=0.206 Sum_probs=251.9
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC-CCChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG-ILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~ 96 (524)
..++|++|++++|++++..|..|+++++|++|+|++|+++.++. . .+++|++|++++|.+.+ .+|..+
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~---------~--~l~~L~~L~L~~N~l~~~~~p~~~ 111 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC---------H--PTVNLKHLDLSFNAFDALPICKEF 111 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC---------C--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc---------c--ccCCccEEeccCCccccccchhhh
Confidence 34799999999999998889999999999999999999987642 2 78999999999999997 478999
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCC--CeEEcccCcC--cccCCccccCCC-----------------------
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGL--TLLSLFNNDL--NGTISPTMGRLK----------------------- 149 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~----------------------- 149 (524)
+.+. +|+.|++++|.+.+ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 112 ~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 187 (520)
T 2z7x_B 112 GNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187 (520)
T ss_dssp GGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT
T ss_pred ccCC-cceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhh
Confidence 9998 99999999999875 456777777 9999999888 556665555532
Q ss_pred ------------------------------------------------------------CCCeEecccCcccccCCccc
Q 040301 150 ------------------------------------------------------------QLRGLSLKYNNLEGSIPYDL 169 (524)
Q Consensus 150 ------------------------------------------------------------~L~~L~L~~n~i~~~~~~~~ 169 (524)
+|++|++++|.+++.+|..+
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCC
T ss_pred cccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccch
Confidence 67777777777777777766
Q ss_pred -----cCCCCCCEEEccCCcccccCC-c------------------------c-ccCCCCCCEEEccCCcCCCccChhcc
Q 040301 170 -----CHLKLMYGIRLTGNKLSGHIP-P------------------------C-LASLTSLRELHLGSNKLTSSIPSSLW 218 (524)
Q Consensus 170 -----~~l~~L~~L~l~~n~l~~~~~-~------------------------~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 218 (524)
..+++|+.+++++|.+ .+| . . +..+++|++|++++|.+.+..|..+.
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc
Confidence 5555555555555544 122 0 0 15678899999999999887888888
Q ss_pred CCCCCCEEEcCCCcCcc--cCCcCccCCCCCCEEEcCCCcCcc-cc-ccccccCCCCEEEccCCcccCCCcccccCCCCC
Q 040301 219 SLEYILMINLSSNSLND--SLPSNIQTLKVLRVLDLSRNQLSG-DI-STIGALVDLETLSLASNQFQGPIPESVGSLISL 294 (524)
Q Consensus 219 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 294 (524)
.+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+ .+ ..+..+++|+.|++++|++++..|..+. ++|
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L 423 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI 423 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence 89999999999999886 455678888999999999999887 55 3477788999999999998877776554 689
Q ss_pred CEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCCCCCCCC
Q 040301 295 ESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGNYALCGL 355 (524)
Q Consensus 295 ~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n~~lc~~ 355 (524)
+.|++++|+++ .+|..+..+++|+.+++++|.++...+. ...+..+..+++.+|+..|..
T Consensus 424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 99999999988 7787777889999999999988853332 345667778888888877753
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=303.61 Aligned_cols=298 Identities=19% Similarity=0.197 Sum_probs=251.6
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~ 96 (524)
..++|++|++++|++++..|..|.++++|++|+|++|+++.++. . .+++|++|++++|.+.+. .|..|
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~---------~--~l~~L~~L~Ls~N~l~~l~~p~~~ 142 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC---------C--PMASLRHLDLSFNDFDVLPVCKEF 142 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS---------C--CCTTCSEEECCSSCCSBCCCCGGG
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc---------c--ccccCCEEECCCCCccccCchHhh
Confidence 34799999999999998889999999999999999999987652 2 789999999999999974 56899
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCC--CeEEcccCcC--cccCCccccCCC-----------------------
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGL--TLLSLFNNDL--NGTISPTMGRLK----------------------- 149 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~----------------------- 149 (524)
..+. +|+.|++++|.+... .+..+++| +.|++++|.+ ++..|..+..+.
T Consensus 143 ~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 218 (562)
T 3a79_B 143 GNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218 (562)
T ss_dssp GGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEES
T ss_pred cccC-cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccc
Confidence 9998 999999999999753 34555555 9999999988 666665554433
Q ss_pred ----------------------------------------------------------CCCeEecccCcccccCCccc--
Q 040301 150 ----------------------------------------------------------QLRGLSLKYNNLEGSIPYDL-- 169 (524)
Q Consensus 150 ----------------------------------------------------------~L~~L~L~~n~i~~~~~~~~-- 169 (524)
+|++|++++|.+++.+|..+
T Consensus 219 ~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp SEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred ccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh
Confidence 67777777787776666554
Q ss_pred ---------------------------------------------------cCCCCCCEEEccCCcccccCCccccCCCC
Q 040301 170 ---------------------------------------------------CHLKLMYGIRLTGNKLSGHIPPCLASLTS 198 (524)
Q Consensus 170 ---------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 198 (524)
..+++|+.|++++|.+.+..|..+..+++
T Consensus 299 ~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 378 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378 (562)
T ss_dssp CCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred cccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCC
Confidence 67789999999999999888999999999
Q ss_pred CCEEEccCCcCCCc--cChhccCCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEE
Q 040301 199 LRELHLGSNKLTSS--IPSSLWSLEYILMINLSSNSLNDSLP-SNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLS 274 (524)
Q Consensus 199 L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~ 274 (524)
|+.|++++|++++. +|..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+++.. ..+. ++|+.|+
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~ 456 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence 99999999999863 35678999999999999999998444 45889999999999999997644 2222 6899999
Q ss_pred ccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCeEEccCCcCccccCC
Q 040301 275 LASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS-LETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 275 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
|++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.+++++|++.|.++.
T Consensus 457 L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999999 67877779999999999999999 45555 89999999999999999987754
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.6e-34 Score=303.60 Aligned_cols=332 Identities=23% Similarity=0.223 Sum_probs=261.4
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-+++++.|||++|+|++..|..|.++++|++|+|++|+|+.++. ++|.++++|++|+|++|++++..+.
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~--------~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--------GAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--------TTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh--------hHhcCCCCCCEEEccCCcCCCCCHH
Confidence 43335799999999999998888899999999999999999998764 7899999999999999999988888
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc-CCccccCCCCCCeEecccCcccccCCccccCCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLK 173 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 173 (524)
.|..+. +|++|++++|++++..+..|+++++|++|++++|.+... .|..++.+++|++|++++|.+++..+..+..+.
T Consensus 119 ~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 119 AFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 899998 999999999999988888899999999999999999764 577889999999999999988765443332111
Q ss_pred --------------------------------------------------------------------------------
Q 040301 174 -------------------------------------------------------------------------------- 173 (524)
Q Consensus 174 -------------------------------------------------------------------------------- 173 (524)
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence
Q ss_pred ---------------------------------------------------CCCEEEccCCcccccCCc-----------
Q 040301 174 ---------------------------------------------------LMYGIRLTGNKLSGHIPP----------- 191 (524)
Q Consensus 174 ---------------------------------------------------~L~~L~l~~n~l~~~~~~----------- 191 (524)
.++.|++.+|.+....+.
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 122222222222111000
Q ss_pred --------cccCCCCCCEEEccCCcCCC-------------------------------------------------c-c
Q 040301 192 --------CLASLTSLRELHLGSNKLTS-------------------------------------------------S-I 213 (524)
Q Consensus 192 --------~~~~l~~L~~L~l~~n~l~~-------------------------------------------------~-~ 213 (524)
....+++|+.|+++.|.+.. . .
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 01124566666666665431 0 1
Q ss_pred ChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc--ccccccccCCCCEEEccCCcccCCCcccccCC
Q 040301 214 PSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG--DISTIGALVDLETLSLASNQFQGPIPESVGSL 291 (524)
Q Consensus 214 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 291 (524)
...+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+.. .+..+..+++|+.|+|++|++++..|..|..+
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 1234556677777888888877777888888999999999987543 23678889999999999999999889999999
Q ss_pred CCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCC-CcC-CCCCcccccCCCCCCCC
Q 040301 292 ISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVK-GSF-KNFSAESFFGNYALCGL 355 (524)
Q Consensus 292 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~~~-~~~~~~~~~~n~~lc~~ 355 (524)
++|+.|+|++|++++..|..+..+++|+.|++++|.+++..+.. ..+ ..+..+++.+|++.|.+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999888889999999999999999999876653 233 56788899999998863
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=303.99 Aligned_cols=187 Identities=25% Similarity=0.266 Sum_probs=156.0
Q ss_pred cCCCCCCEEEccCCcccccC--CccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCC-cCccCCCC
Q 040301 170 CHLKLMYGIRLTGNKLSGHI--PPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLP-SNIQTLKV 246 (524)
Q Consensus 170 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 246 (524)
..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+.. ..+..+++|+.|++++|.+.+..+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-ccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 45678889999999887553 667888999999999999988544 448889999999999999887655 56888999
Q ss_pred CCEEEcCCCcCcccc-ccccccCCCCEEEccCCccc-CCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 247 LRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQ-GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 247 L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
|++|++++|.+.+.. ..+..+++|+.|++++|++. +.+|..+..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 999999999988755 67788999999999999987 5688889999999999999999998888899999999999999
Q ss_pred CCcCccccCC-CCcCCCCCcccccCCCCCCCCCC
Q 040301 325 HNRLEGKILV-KGSFKNFSAESFFGNYALCGLPK 357 (524)
Q Consensus 325 ~n~l~~~~~~-~~~~~~~~~~~~~~n~~lc~~p~ 357 (524)
+|.+++..+. ...+..+..+++.+|+..|..|.
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999886654 35567788888999988877553
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-34 Score=306.57 Aligned_cols=305 Identities=21% Similarity=0.278 Sum_probs=217.6
Q ss_pred CCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 14 SPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 14 ~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
+|..-+++++.||+++|++++..+..|.++++|++|+|++|.++.+.. ..+.++++|++|+|++|.+....+
T Consensus 19 ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 19 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP--------ELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT--------THHHHCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH--------HHHhcccCcCEEECCCCccCccCh
Confidence 343334789999999999997777789999999999999999887643 678888999999999999987666
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCcccc--C
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC--H 171 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~ 171 (524)
..|..+. +|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .
T Consensus 91 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 6788887 999999999999877778899999999999999999888888888899999999999988876665543 4
Q ss_pred CCCCCEEEccCCcccccCCccccCC---------------------------CCCCEEEccCCcCCCccChhccCCCC--
Q 040301 172 LKLMYGIRLTGNKLSGHIPPCLASL---------------------------TSLRELHLGSNKLTSSIPSSLWSLEY-- 222 (524)
Q Consensus 172 l~~L~~L~l~~n~l~~~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~-- 222 (524)
+++|+.|++++|.+.+..|..+..+ ++|+.|++++|.+.+..+..+..++.
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 5788888888888876666555433 44566666666666555566655543
Q ss_pred CCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccC-----CCcc----cccCCC
Q 040301 223 ILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQG-----PIPE----SVGSLI 292 (524)
Q Consensus 223 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~-----~~~~----~~~~l~ 292 (524)
|+.|++++|.+.+..+..+..+++|++|++++|.+.+.. ..+..+++|+.|++++|...+ .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 777777777766666666666777777777777666544 345555555555555543322 1111 344555
Q ss_pred CCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCc
Q 040301 293 SLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNR 327 (524)
Q Consensus 293 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~ 327 (524)
+|+.|++++|.+++..+..+..+++|+.+++++|.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 55555555555555555555555555555555544
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-33 Score=276.59 Aligned_cols=303 Identities=22% Similarity=0.312 Sum_probs=259.2
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|+.|++++|+++ .+| .+..+++|++|++++|+++++ ..+.++++|++|++++|.+... + .+.
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~----------~~~~~l~~L~~L~L~~n~i~~~-~-~~~ 107 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI----------SPLSNLVKLTNLYIGTNKITDI-S-ALQ 107 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCC-G-GGT
T ss_pred hcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc----------hhhhcCCcCCEEEccCCcccCc-h-HHc
Confidence 4579999999999998 455 489999999999999999875 3388899999999999999864 3 588
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.+. +|++|++++|.+.+..+ +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 108 ~l~-~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 108 NLT-NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TCT-TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred CCC-cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 887 99999999999985433 889999999999999766444 458999999999999999985443 889999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.. . +..+++|++|++++|.+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCcc
Confidence 9999999985433 8889999999999999985543 888999999999999998643 3 88999999999999999
Q ss_pred ccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCc
Q 040301 258 SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGS 337 (524)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~ 337 (524)
++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+..+..+++|+.+++++|++++..+ ...
T Consensus 256 ~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~ 331 (347)
T 4fmz_A 256 SDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LAS 331 (347)
T ss_dssp CCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGG
T ss_pred CCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhh
Confidence 875 5688899999999999999864 458899999999999999998888999999999999999999988766 456
Q ss_pred CCCCCcccccCCC
Q 040301 338 FKNFSAESFFGNY 350 (524)
Q Consensus 338 ~~~~~~~~~~~n~ 350 (524)
+..+..+++.+|+
T Consensus 332 l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 332 LSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEESSSCC-
T ss_pred hhccceeehhhhc
Confidence 7777778877774
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-34 Score=280.15 Aligned_cols=253 Identities=32% Similarity=0.519 Sum_probs=145.3
Q ss_pred ccEEEeccCcccc--cCCccccCCCCCCeEEccc-CcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 103 FQNFYAFNCKLKG--NIPQEIGNLRGLTLLSLFN-NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 103 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
++.|++++|.+.+ .+|..|.++++|++|++++ |.+.+..|..++++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 4444444444443 3444444444444444442 444444444444444455555555544444444444555555555
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCC-CCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLE-YILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
+++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|.++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 555555444444555555555555555555444455555554 555555555555555555555554 555555555555
Q ss_pred ccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCc
Q 040301 259 GDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGS 337 (524)
Q Consensus 259 ~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~ 337 (524)
+.. ..+..+++|+.|+|++|++++..|. +..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 433 4455566666666666666644443 56667777777777777777777777777777777777777777776666
Q ss_pred CCCCCcccccCCCCCCCCCC
Q 040301 338 FKNFSAESFFGNYALCGLPK 357 (524)
Q Consensus 338 ~~~~~~~~~~~n~~lc~~p~ 357 (524)
+..+..+++.+|+.+||.|.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTS
T ss_pred ccccChHHhcCCCCccCCCC
Confidence 77777778888888888653
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-33 Score=276.08 Aligned_cols=283 Identities=26% Similarity=0.400 Sum_probs=246.7
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|++|++++|++++. +. |.++++|++|++++|.++.+ ..+.++++|++|++++|.+.+..+ +.
T Consensus 64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~----------~~~~~l~~L~~L~l~~n~i~~~~~--~~ 129 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI----------SALQNLTNLRELYLNEDNISDISP--LA 129 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC----------GGGTTCTTCSEEECTTSCCCCCGG--GT
T ss_pred hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc----------hHHcCCCcCCEEECcCCcccCchh--hc
Confidence 458999999999999954 44 99999999999999999875 568899999999999999996544 77
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.+. +|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.
T Consensus 130 ~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 203 (347)
T 4fmz_A 130 NLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203 (347)
T ss_dssp TCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred cCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccce
Confidence 787 99999999997664444 48999999999999999985543 8899999999999999985433 889999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCcc
Confidence 9999999985544 8889999999999999985533 88999999999999999863 5688999999999999999
Q ss_pred ccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCc
Q 040301 258 SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLE 329 (524)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~ 329 (524)
++. ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++++..| +..+++|+.+++++|+++
T Consensus 278 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 278 SDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 876 568889999999999999998888999999999999999999997666 889999999999999875
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.8e-34 Score=300.72 Aligned_cols=320 Identities=24% Similarity=0.254 Sum_probs=213.9
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhHh
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVIG 97 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~ 97 (524)
.++|++|++++|++++..|..|.++++|++|+|++|++++.+. ..++++++|++|++++|.+.+. .|..+.
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS--------SWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH--------HHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH--------HHhccCCCCcEEECCCCcccccchhhhhh
Confidence 4688888888888887777888888888888888888876542 4467777777777777777753 455666
Q ss_pred cCcccccEEEeccCcc-cccCCccccCCCCCCeEEcccCcCcccCCccccC------------------------CCCCC
Q 040301 98 NFSASFQNFYAFNCKL-KGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGR------------------------LKQLR 152 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------l~~L~ 152 (524)
.+. +|++|++++|.+ ....+..|.++++|++|++++|++.+..|..+.. +++|+
T Consensus 121 ~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 121 NLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp TCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred ccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence 666 777777777763 3333356667777777777777776655555433 44555
Q ss_pred eEecccCccccc--------------------------------------------------------------------
Q 040301 153 GLSLKYNNLEGS-------------------------------------------------------------------- 164 (524)
Q Consensus 153 ~L~L~~n~i~~~-------------------------------------------------------------------- 164 (524)
+|++++|.+++.
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 556666555431
Q ss_pred ---------------------------------------------CCccc-cCCCCCCEEEccCCcccccCC---ccccC
Q 040301 165 ---------------------------------------------IPYDL-CHLKLMYGIRLTGNKLSGHIP---PCLAS 195 (524)
Q Consensus 165 ---------------------------------------------~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~ 195 (524)
+|..+ ..+++|+.|++++|++.+..| ..+..
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence 11111 235556666666666654432 22455
Q ss_pred CCCCCEEEccCCcCCCccC--hhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEE
Q 040301 196 LTSLRELHLGSNKLTSSIP--SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETL 273 (524)
Q Consensus 196 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 273 (524)
+++|+.|++++|.+++..+ ..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+++.+..+ .++|+.|
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L 436 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVL 436 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEE
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEE
Confidence 6666666666666654321 34566666777777777666 45666666667777777777666544322 2466777
Q ss_pred EccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCCCCC
Q 040301 274 SLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGNYAL 352 (524)
Q Consensus 274 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n~~l 352 (524)
++++|++++. +..+++|+.|++++|+++ .+|. ...+++|+.|++++|.+++..+. ...+..+..+++.+|+..
T Consensus 437 ~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 437 DVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp ECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred ECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 7777766643 247889999999999998 5665 46789999999999999886664 356777888899999988
Q ss_pred CCCC
Q 040301 353 CGLP 356 (524)
Q Consensus 353 c~~p 356 (524)
|..|
T Consensus 511 ~~~~ 514 (549)
T 2z81_A 511 CSCP 514 (549)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 8654
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.8e-33 Score=273.58 Aligned_cols=290 Identities=21% Similarity=0.251 Sum_probs=219.4
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+++.++++++.++ .+|..+. ++|++|++++|+++.++. ..+.++++|++|++++|.+.+..|..|..+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKD--------GDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeCh--------hhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 36888888888887 6676653 578888888888887653 567888888888888888887778888888
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc--cCCccccCCCCCCE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG--SIPYDLCHLKLMYG 177 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~ 177 (524)
. +|+.|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.
T Consensus 100 ~-~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 V-KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp T-TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred C-CCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 7 8888888888887 4554443 688888888888887777778888888888888888853 56677888888888
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|.+.. +|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 176 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 176 IRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp EECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred EECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 8888888773 444433 6788888888888766677788888888888888888776666777888888888888888
Q ss_pred ccccccccccCCCCEEEccCCcccCCCcccccC------CCCCCEEeCCCCcCCC--CCcccccCCCCCCeEEccCCc
Q 040301 258 SGDISTIGALVDLETLSLASNQFQGPIPESVGS------LISLESLDLSGNNLSG--KIPKSLETLSHLKQFNASHNR 327 (524)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~l~l~~n~ 327 (524)
+..+..+..+++|+.|++++|++++..+..|.. .+.++.|++++|.+.. ..|..+..+++++.+++++|+
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 877777777788888888888887665555533 3667788888887753 455677777778888877763
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-34 Score=281.41 Aligned_cols=252 Identities=27% Similarity=0.460 Sum_probs=218.8
Q ss_pred CCCCEEEccCCCCCC--CCChhHhcCcccccEEEecc-CcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCC
Q 040301 76 RHLKALSLGSNPLGG--ILPPVIGNFSASFQNFYAFN-CKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLR 152 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 152 (524)
.++++|+|++|.+.+ .+|..+..+. +|+.|++++ |.+.+.+|..|+++++|++|++++|.+++..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467888888888887 7788888887 888888884 788888888888888888888888888888888888888888
Q ss_pred eEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCC-CCCEEEccCCcCCCccChhccCCCCCCEEEcCCC
Q 040301 153 GLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLT-SLRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231 (524)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 231 (524)
+|++++|.+++.+|..+..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888888888888888888888888888888888888888887 888999988888888888888887 999999999
Q ss_pred cCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCccc
Q 040301 232 SLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKS 311 (524)
Q Consensus 232 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 311 (524)
.+.+..|..+..+++|+.|++++|.+++.+..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 98888888888999999999999999877766888899999999999999899999999999999999999999888886
Q ss_pred ccCCCCCCeEEccCCcCcc
Q 040301 312 LETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 312 ~~~l~~L~~l~l~~n~l~~ 330 (524)
..+++|+.+++++|+.-+
T Consensus 288 -~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEE
T ss_pred -ccccccChHHhcCCCCcc
Confidence 788999999999998433
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.9e-33 Score=274.53 Aligned_cols=288 Identities=20% Similarity=0.259 Sum_probs=228.5
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+++.+++++++++ .+|..+. ++|++|++++|.++.+.. ..+.++++|++|++++|.+.+..|..|..+.
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRK--------DDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECT--------TTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCH--------hHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 6888999998888 6777663 688999999998877643 5788888899999999998888888888887
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc--cCCccccCCCCCCEE
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG--SIPYDLCHLKLMYGI 178 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L 178 (524)
+|+.|++++|.+. .+|..+. ++|++|++++|++....+..+..+++|+.|++++|.++. ..+..+..+ +|+.|
T Consensus 103 -~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 103 -KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp -TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred -CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 8899999988887 4555444 788899999888887777778888889999998888863 566777777 88888
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|++++ +|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 178 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 178 RISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp BCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 888888874 454443 68888888888888777778888888888888888888777777888888888888888888
Q ss_pred cccccccccCCCCEEEccCCcccCCCcccccC------CCCCCEEeCCCCcCC--CCCcccccCCCCCCeEEccCCc
Q 040301 259 GDISTIGALVDLETLSLASNQFQGPIPESVGS------LISLESLDLSGNNLS--GKIPKSLETLSHLKQFNASHNR 327 (524)
Q Consensus 259 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~l~l~~n~ 327 (524)
..+..+..+++|+.|++++|++++..+..|.. .++|+.|++++|.+. +..|..+..+++|+.+++++|.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77777888888888888888888766655544 356888888888876 5667778888888888888774
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-32 Score=281.50 Aligned_cols=298 Identities=25% Similarity=0.330 Sum_probs=169.3
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|++||+++|++++..| |.++++|++|++++|.++.. ..+.++++|++|++++|.+.+..+ +.
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~L~~n~l~~~~~--~~ 131 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI----------TPLANLTNLTGLTLFNNQITDIDP--LK 131 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC----------hhhcCCCCCCEEECCCCCCCCChH--Hc
Confidence 34788888888888885433 78888888888888887765 237778888888888888876533 67
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.++ +|++|++++|.+.+. + .+.++++|+.|+++ |.+.+. ..+.++++|++|++++|.+++. ..+..+++|+.
T Consensus 132 ~l~-~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 203 (466)
T 1o6v_A 132 NLT-NLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLES 203 (466)
T ss_dssp TCT-TCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred CCC-CCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCE
Confidence 776 888888888887642 2 35555555555553 223222 1255566666666666665532 23555566666
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred EEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCcc
Confidence 6666666554333 44455555555555555432 234555555555555555554322 45555555555555555
Q ss_pred ccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCc
Q 040301 258 SGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGS 337 (524)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~ 337 (524)
++.+. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. +....
T Consensus 278 ~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~ 351 (466)
T 1o6v_A 278 SNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLAN 351 (466)
T ss_dssp CCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTT
T ss_pred Ccccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhcc
Confidence 54433 4455555555555555553322 4455555555555555554333 44455555555555555443 22223
Q ss_pred CCCCCcccccCC
Q 040301 338 FKNFSAESFFGN 349 (524)
Q Consensus 338 ~~~~~~~~~~~n 349 (524)
+..+..+++.+|
T Consensus 352 l~~L~~L~l~~n 363 (466)
T 1o6v_A 352 LTNINWLSAGHN 363 (466)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEeCCCC
Confidence 334444444444
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.5e-32 Score=264.79 Aligned_cols=273 Identities=22% Similarity=0.264 Sum_probs=236.7
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-+++++.|++++|++++..+..|.++++|++|++++|+++.+.. ..+.++++|++|++++|.++. +|.
T Consensus 47 p~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~-l~~ 117 (330)
T 1xku_A 47 PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP--------GAFAPLVKLERLYLSKNQLKE-LPE 117 (330)
T ss_dssp CCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSSCCSB-CCS
T ss_pred CccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH--------HHhcCCCCCCEEECCCCcCCc-cCh
Confidence 44345799999999999998888889999999999999999987632 788999999999999999994 454
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcc--cCCccccCCCCCCeEecccCcccccCCccccCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG--TISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHL 172 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 172 (524)
.+. . +|++|++++|.+.+..+..|.++++|+.|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+.
T Consensus 118 ~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~-- 191 (330)
T 1xku_A 118 KMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP-- 191 (330)
T ss_dssp SCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--
T ss_pred hhc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--
Confidence 433 3 89999999999998888889999999999999999964 67788999999999999999998 4565554
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEc
Q 040301 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252 (524)
Q Consensus 173 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 252 (524)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 89999999999999888899999999999999999999777778999999999999999998 68888999999999999
Q ss_pred CCCcCcccc-cccc------ccCCCCEEEccCCcccC--CCcccccCCCCCCEEeCCCCc
Q 040301 253 SRNQLSGDI-STIG------ALVDLETLSLASNQFQG--PIPESVGSLISLESLDLSGNN 303 (524)
Q Consensus 253 ~~n~l~~~~-~~~~------~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 303 (524)
++|.+++.+ ..+. ..+.|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999876 3443 24789999999999864 567889999999999999985
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-32 Score=275.33 Aligned_cols=292 Identities=20% Similarity=0.209 Sum_probs=208.4
Q ss_pred cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc
Q 040301 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121 (524)
Q Consensus 42 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 121 (524)
.+.++++|++++|.++.++. ..+.++++|++|++++|.+.+..+..|..+. +|+.|++++|.+.+..|..|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~--------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA--------ALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEESEECT--------HHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCCchhhCCh--------hHhcccccCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHh
Confidence 46899999999999998764 5578899999999999999988888999998 99999999999999889999
Q ss_pred cCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040301 122 GNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 201 (524)
+++++|++|++++|++....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.. +..+++|+.
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~ 190 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 190 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSE
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccce
Confidence 99999999999999999766667899999999999999999888888999999999999999998642 445666666
Q ss_pred EEccCCcCCCc------------------cChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-c
Q 040301 202 LHLGSNKLTSS------------------IPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-S 262 (524)
Q Consensus 202 L~l~~n~l~~~------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 262 (524)
|++++|.+.+. ++. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.. .
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 66666655421 111 1123455555555555432 34555566666666666655543 4
Q ss_pred cccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCC
Q 040301 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342 (524)
Q Consensus 263 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~ 342 (524)
.+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++... ...+..+.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~ 342 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 342 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCC
Confidence 45555666666666666553 3444455566666666666655 34444555566666666666655421 23344555
Q ss_pred cccccCCCCCC
Q 040301 343 AESFFGNYALC 353 (524)
Q Consensus 343 ~~~~~~n~~lc 353 (524)
.+++.+|+.-|
T Consensus 343 ~L~l~~N~~~~ 353 (390)
T 3o6n_A 343 NLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCEEH
T ss_pred EEEcCCCCccc
Confidence 55555555444
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.4e-32 Score=276.28 Aligned_cols=298 Identities=25% Similarity=0.358 Sum_probs=256.6
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
.++++.|++++|.++ .+| .+..+++|++|++++|.++.++ . +.++++|++|++++|.+.+..+ +..
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~---------~-~~~l~~L~~L~l~~n~l~~~~~--~~~ 110 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDIT---------P-LKNLTKLVDILMNNNQIADITP--LAN 110 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG---------G-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCch---------h-hhccccCCEEECCCCccccChh--hcC
Confidence 479999999999998 566 4899999999999999998752 3 8899999999999999997655 888
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
+. +|+.|++++|.+.+..+ +.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.+.. .+..+++|+.|
T Consensus 111 l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L 182 (466)
T 1o6v_A 111 LT-NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERL 182 (466)
T ss_dssp CT-TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEE
T ss_pred CC-CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEE
Confidence 87 99999999999986543 89999999999999999854 358999999999997 4555333 38899999999
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 9999998754 348889999999999999986654 77899999999999999853 46889999999999999998
Q ss_pred cccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcC
Q 040301 259 GDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSF 338 (524)
Q Consensus 259 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~ 338 (524)
+.+. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++..+ ...+
T Consensus 257 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l 330 (466)
T 1o6v_A 257 NLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSL 330 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGC
T ss_pred cchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccC
Confidence 7665 8889999999999999996544 8899999999999999996544 7899999999999999988665 4567
Q ss_pred CCCCcccccCCC
Q 040301 339 KNFSAESFFGNY 350 (524)
Q Consensus 339 ~~~~~~~~~~n~ 350 (524)
..+..+++.+|.
T Consensus 331 ~~L~~L~l~~n~ 342 (466)
T 1o6v_A 331 TKLQRLFFYNNK 342 (466)
T ss_dssp TTCCEEECCSSC
T ss_pred ccCCEeECCCCc
Confidence 778888888774
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.7e-32 Score=265.36 Aligned_cols=272 Identities=23% Similarity=0.297 Sum_probs=236.2
Q ss_pred CCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCCh
Q 040301 15 PSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPP 94 (524)
Q Consensus 15 ~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 94 (524)
|..-.++++.|++++|++++..|..|.++++|++|++++|+++.+.. ..+.++++|++|++++|.+.. +|.
T Consensus 49 p~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~-l~~ 119 (332)
T 2ft3_A 49 PKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE--------KAFSPLRKLQKLYISKNHLVE-IPP 119 (332)
T ss_dssp CSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------GGSTTCTTCCEEECCSSCCCS-CCS
T ss_pred CCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------hHhhCcCCCCEEECCCCcCCc-cCc
Confidence 44345799999999999998888899999999999999999987632 788999999999999999994 444
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCc--ccCCccccCCCCCCeEecccCcccccCCccccCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLN--GTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHL 172 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 172 (524)
.+. . +|++|++++|.+....+..|.++++|+.|++++|.+. +..+..+..+ +|++|++++|.+++ +|..+.
T Consensus 120 ~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-- 192 (332)
T 2ft3_A 120 NLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-- 192 (332)
T ss_dssp SCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--
T ss_pred ccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--
Confidence 443 3 8999999999999877788999999999999999996 3677888888 99999999999985 665554
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEc
Q 040301 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252 (524)
Q Consensus 173 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 252 (524)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 78999999999999888889999999999999999999887788999999999999999998 68888999999999999
Q ss_pred CCCcCcccc-ccccc------cCCCCEEEccCCccc--CCCcccccCCCCCCEEeCCCCc
Q 040301 253 SRNQLSGDI-STIGA------LVDLETLSLASNQFQ--GPIPESVGSLISLESLDLSGNN 303 (524)
Q Consensus 253 ~~n~l~~~~-~~~~~------l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 303 (524)
++|.+++.+ ..+.. .+.|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999876 44433 467999999999987 6778889999999999999985
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-31 Score=287.18 Aligned_cols=307 Identities=22% Similarity=0.237 Sum_probs=246.8
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
.++|++|||++|+|++..|..|.++++|++|+|++|+++.++. ..|.++++|++|+|++|++++..+..|+.
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~--------~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--------GAFSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG--------GGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH--------HHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 4789999999999998888899999999999999999988754 67899999999999999999887778888
Q ss_pred CcccccEEEeccCcccc-cCCccccCCCCCCeEEcccCcCcccCCccccCC-----------------------------
Q 040301 99 FSASFQNFYAFNCKLKG-NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRL----------------------------- 148 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------------------------- 148 (524)
+. +|++|++++|.+.+ ..|..++.+++|++|++++|++.+..+..+..+
T Consensus 147 L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~ 225 (635)
T 4g8a_A 147 LK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 225 (635)
T ss_dssp CT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred Cc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence 88 99999999999875 467888999999999999998865543332111
Q ss_pred --------------------------------------------------------------------------------
Q 040301 149 -------------------------------------------------------------------------------- 148 (524)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (524)
T Consensus 226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 305 (635)
T 4g8a_A 226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305 (635)
T ss_dssp EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence
Q ss_pred ----------------------CCCCeEecccCcccccCCc-------------------cccCCCCCCEEEccCCcccc
Q 040301 149 ----------------------KQLRGLSLKYNNLEGSIPY-------------------DLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 149 ----------------------~~L~~L~L~~n~i~~~~~~-------------------~~~~l~~L~~L~l~~n~l~~ 187 (524)
.+|+.|++.+|.+....+. ....+++|+.|++++|.+..
T Consensus 306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 1222333333332211110 11234566666666665431
Q ss_pred -------------------------------------------------c-CCccccCCCCCCEEEccCCcCCCccChhc
Q 040301 188 -------------------------------------------------H-IPPCLASLTSLRELHLGSNKLTSSIPSSL 217 (524)
Q Consensus 188 -------------------------------------------------~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 217 (524)
. .+..+..+.+++.++++.|.+.+..+..+
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 1 11234566788888999999988888889
Q ss_pred cCCCCCCEEEcCCCcC-cccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCC
Q 040301 218 WSLEYILMINLSSNSL-NDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLE 295 (524)
Q Consensus 218 ~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 295 (524)
..++.|+.|++++|.+ .+..|..+..+++|+.|++++|++++.+ ..+..+++|+.|+|++|++++..|..|..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 9999999999999975 4457888999999999999999999876 7789999999999999999998888999999999
Q ss_pred EEeCCCCcCCCCCcccccCC-CCCCeEEccCCcCccccCC
Q 040301 296 SLDLSGNNLSGKIPKSLETL-SHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 296 ~L~l~~N~l~~~~~~~~~~l-~~L~~l~l~~n~l~~~~~~ 334 (524)
.|++++|++++..|..+..+ ++|+.|++++|++.|.+..
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999988 6899999999999998753
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.4e-32 Score=285.01 Aligned_cols=293 Identities=20% Similarity=0.214 Sum_probs=247.2
Q ss_pred cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc
Q 040301 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121 (524)
Q Consensus 42 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 121 (524)
.+.+++.|++++|.++.++. ..+.++++|++|+|++|.+.+..|..|..+. +|+.|++++|.+++..|..|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA--------ALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCEESEECT--------HHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeCCCCCCcCH--------HHHccCCCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHH
Confidence 46789999999999988764 5678899999999999999998888999998 99999999999999889999
Q ss_pred cCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040301 122 GNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 201 (524)
+++++|+.|+|++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.. +..+++|+.
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~ 196 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 196 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhh
Confidence 99999999999999999777777899999999999999999888889999999999999999998653 334455555
Q ss_pred EEccCCcCCC------------------ccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-c
Q 040301 202 LHLGSNKLTS------------------SIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-S 262 (524)
Q Consensus 202 L~l~~n~l~~------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 262 (524)
|++++|.+.+ .++.. ..++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+.+ .
T Consensus 197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp EECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred hhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 5555554432 11111 13578888888888875 367888999999999999998875 6
Q ss_pred cccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCCCCcCCCCC
Q 040301 263 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILVKGSFKNFS 342 (524)
Q Consensus 263 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~ 342 (524)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.. ...+..+.
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 348 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCC
Confidence 78899999999999999985 5777788999999999999998 67888888999999999999987643 44577888
Q ss_pred cccccCCCCCCC
Q 040301 343 AESFFGNYALCG 354 (524)
Q Consensus 343 ~~~~~~n~~lc~ 354 (524)
.+++.+|+.-|.
T Consensus 349 ~L~l~~N~~~~~ 360 (597)
T 3oja_B 349 NLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEeeCCCCCCh
Confidence 899999987774
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=8.1e-31 Score=267.48 Aligned_cols=295 Identities=20% Similarity=0.178 Sum_probs=219.6
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|+.||+++|++++. | .|+++++|++|++++|+++++ .++++++|++|++++|.+++. + +.
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-----------~~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-----------DLSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-----------CCTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-----------ccccCCCCCEEECcCCCCcee-e--cC
Confidence 357899999999999954 6 689999999999999998874 267788999999999999875 3 77
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.+. +|+.|++++|.+++. | ++++++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|+.
T Consensus 104 ~l~-~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 104 PLT-KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TCT-TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCC-cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 777 899999999998863 4 88899999999999999864 3778888999999888654444 4778888899
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|++++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++.+ +| +..+++|+.|++++|.+
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 9999888885 34 77788888888888888754 37778888888888888886 55 77888888888888888
Q ss_pred cccc-ccccccC-------CCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcc--------cccCCCCCCeE
Q 040301 258 SGDI-STIGALV-------DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPK--------SLETLSHLKQF 321 (524)
Q Consensus 258 ~~~~-~~~~~l~-------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~l~~L~~l 321 (524)
++.+ ..+..+. +|+.|++++|++.+.+| +..+++|+.|++++|...+.+|. .+..+++|+.+
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 8765 2222222 34445555555444444 35667777777777776555543 24455677777
Q ss_pred EccCCcCccccCCCCcCCCCCcccccCCC
Q 040301 322 NASHNRLEGKILVKGSFKNFSAESFFGNY 350 (524)
Q Consensus 322 ~l~~n~l~~~~~~~~~~~~~~~~~~~~n~ 350 (524)
++++|.+++. + ...+..+..+++.+|.
T Consensus 324 ~L~~N~l~~l-~-l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 324 YLNNTELTEL-D-VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCCCSCC-C-CTTCTTCSEEECCSSC
T ss_pred ECCCCccccc-c-cccCCcCcEEECCCCC
Confidence 7777777763 2 3445556666666654
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6e-30 Score=261.01 Aligned_cols=275 Identities=18% Similarity=0.138 Sum_probs=231.2
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..++|+.|++++|++++. | ++++++|++|++++|+++++ .++++++|++|++++|.+++. | +.
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-----------~~~~l~~L~~L~L~~N~l~~l-~--~~ 124 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-----------DVTPLTKLTYLNCDTNKLTKL-D--VS 124 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-----------CCTTCTTCCEEECCSSCCSCC-C--CT
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-----------ecCCCCcCCEEECCCCcCCee-c--CC
Confidence 458999999999999964 4 89999999999999999874 267889999999999999974 4 77
Q ss_pred cCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCE
Q 040301 98 NFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYG 177 (524)
Q Consensus 98 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 177 (524)
.++ +|+.|++++|.+++. + ++++++|+.|++++|+..+.. .+..+++|++|++++|.+++ +| +..+++|+.
T Consensus 125 ~l~-~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~ 195 (457)
T 3bz5_A 125 QNP-LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNR 195 (457)
T ss_dssp TCT-TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCE
T ss_pred CCC-cCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCE
Confidence 787 999999999999974 3 889999999999999665554 57889999999999999996 45 889999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 178 IRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 178 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
|++++|++++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+.+..+ +.+++|+.|++++|.+
T Consensus 196 L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 196 LNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDL 266 (457)
T ss_dssp EECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCC
T ss_pred EECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCC
Confidence 99999999865 38889999999999999996 55 8889999999999999997543 4556666655555554
Q ss_pred cccc---------ccccccCCCCEEEccCCcccCCCcc--------cccCCCCCCEEeCCCCcCCCCCcccccCCCCCCe
Q 040301 258 SGDI---------STIGALVDLETLSLASNQFQGPIPE--------SVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQ 320 (524)
Q Consensus 258 ~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 320 (524)
.... ..+..+++|+.|++++|+..+.+|. .+..+++|+.|++++|++++. + +..+++|+.
T Consensus 267 ~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~ 343 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS 343 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE
T ss_pred CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcE
Confidence 4321 1245679999999999987766554 256678999999999999974 3 889999999
Q ss_pred EEccCCcCcc
Q 040301 321 FNASHNRLEG 330 (524)
Q Consensus 321 l~l~~n~l~~ 330 (524)
|++++|.+++
T Consensus 344 L~l~~N~l~~ 353 (457)
T 3bz5_A 344 LSCVNAHIQD 353 (457)
T ss_dssp EECCSSCCCB
T ss_pred EECCCCCCCC
Confidence 9999999987
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.4e-30 Score=250.78 Aligned_cols=277 Identities=18% Similarity=0.179 Sum_probs=169.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC--CChhHhcC
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI--LPPVIGNF 99 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~ 99 (524)
-+.+++++++++ .+|..+. ++|++|++++|+++.++. ..+.++++|++|++++|.+... .+..+..+
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPH--------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCH--------hHhhccccCCEEECCCCccCcccCcccccccc
Confidence 357888888888 6776553 588999999998887653 5578888899999999888743 24555555
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
. +|+.|++++|.+. .+|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 78 ~-~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 78 T-SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp S-CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred c-ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 5 6666666666665 344556666666666666666664433 355556666666666666555555555555555555
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|.+.+. ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 156 ~l~~n~l~~~-----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 156 KMAGNSFQEN-----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp ECTTCEEGGG-----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCccccc-----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 5555555430 23444444555555555555555444555555556666666666655
Q ss_pred ccc-ccccccCCCCEEEccCCcccCCCcccccCCC-CCCEEeCCCCcCCCCCc--ccccCCCCCCeEEccCCcCccccCC
Q 040301 259 GDI-STIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNLSGKIP--KSLETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 259 ~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~--~~~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
+.+ ..+..+++|+.|++++|++++..|..+..++ +|+.|++++|.+++..+ .....+...+.+.+..+.+.|..|.
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 544 3455666677777777777766676677664 77888888887765422 1111122333444455566655443
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=257.11 Aligned_cols=280 Identities=19% Similarity=0.204 Sum_probs=211.9
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.....|+++++++ .+|..+. ++|++|++++|+++.++. ..+.++++|++|++++|.+++..|..|..+.
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISN--------SDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCH--------HHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 3445899999998 7777664 489999999999987653 5788899999999999999988888888887
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccC-cccccCCccccCCCCCCEE
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYN-NLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L 178 (524)
+|++|++++|.+++..+..|.++++|++|++++|++....+ ..+..+++|++|++++| .++...+..+..+++|+.|
T Consensus 101 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 -SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp -TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred -CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 89999999999986655668889999999999999886544 47888999999999988 4666667788888889999
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------- 244 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------- 244 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------
Confidence 99998888877888888888888888888886443334456788888888888887644332221
Q ss_pred cccccccccCCCCEEEccCCcccC----CCcccccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCeEEccCCcCccccC
Q 040301 259 GDISTIGALVDLETLSLASNQFQG----PIPESVGSLISLESLDLSGNNLSGKIPKS-LETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 259 ~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
......++.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.+++++|+++|.++
T Consensus 245 -----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 -----GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -----ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1112334445555554443 35666777888888888888887 44444 5778888888888888877665
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=9.4e-31 Score=258.97 Aligned_cols=275 Identities=16% Similarity=0.167 Sum_probs=195.1
Q ss_pred CCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecc
Q 040301 78 LKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLK 157 (524)
Q Consensus 78 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 157 (524)
....+++++.++. +|..+. .+|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 33 ~~~c~~~~~~l~~-iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 33 NGICKGSSGSLNS-IPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TSEEECCSTTCSS-CCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEeeCCCCCccc-cccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 3445555555552 333222 155666666666655555566677777777777777776666667777777777777
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCC-cCCCccChhccCCCCCCEEEcCCCcCcc
Q 040301 158 YNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIP-PCLASLTSLRELHLGSN-KLTSSIPSSLWSLEYILMINLSSNSLND 235 (524)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 235 (524)
+|.+++..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 777774444446777777777777777764333 36777778888888777 3554455677778888888888888887
Q ss_pred cCCcCccCCCCCCEEEcCCCcCccccc-cccccCCCCEEEccCCcccCCCcccc---cCCCCCCEEeCCCCcCCC----C
Q 040301 236 SLPSNIQTLKVLRVLDLSRNQLSGDIS-TIGALVDLETLSLASNQFQGPIPESV---GSLISLESLDLSGNNLSG----K 307 (524)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~----~ 307 (524)
..|..+..+++|++|++++|.+...+. .+..+++|+.|++++|++++..+..+ .....++.++++++.+++ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 778888888888888888888876663 34457888899999998887554443 346778999999999875 3
Q ss_pred CcccccCCCCCCeEEccCCcCccccCC-CCcCCCCCcccccCCCCCCCCC
Q 040301 308 IPKSLETLSHLKQFNASHNRLEGKILV-KGSFKNFSAESFFGNYALCGLP 356 (524)
Q Consensus 308 ~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~~~~~~~~~~~n~~lc~~p 356 (524)
+|..+..+++|+.|++++|.++..... ...+..+..+++.+|+..|..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 677889999999999999999854333 2567788899999999888644
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.7e-30 Score=248.79 Aligned_cols=232 Identities=22% Similarity=0.224 Sum_probs=187.5
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc--CCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT--ISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
+++.|++++|.+....+..|.++++|++|++++|+++.. .+..+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 455555555555433334456677777777777776632 2445556777777777777776 4566677788888888
Q ss_pred ccCCcccccCC-ccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcc-cCCcCccCCCCCCEEEcCCCcC
Q 040301 180 LTGNKLSGHIP-PCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND-SLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 180 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 257 (524)
+++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 88888775544 567888899999999999887778888999999999999999986 5788999999999999999999
Q ss_pred cccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEEccCCcCccccCC
Q 040301 258 SGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS-HLKQFNASHNRLEGKILV 334 (524)
Q Consensus 258 ~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~l~l~~n~l~~~~~~ 334 (524)
++.+ ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|+.+++++|+++|.+..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9875 6788999999999999999987777899999999999999999999999999985 999999999999987643
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.8e-29 Score=245.19 Aligned_cols=226 Identities=19% Similarity=0.301 Sum_probs=185.8
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
..+++.|||++|+++ .+|..+.++++|++|+|++|.++.++ ..+.++++|++|+|++|.+. .+|..+..
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp---------~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELP---------DTMQQFAGLETLTLARNPLR-ALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCC---------SCGGGGTTCSEEEEESCCCC-CCCGGGGG
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchh---------HHHhccCCCCEEECCCCccc-cCcHHHhc
Confidence 378999999999998 88888999999999999999988543 67888999999999999999 77888888
Q ss_pred CcccccEEEeccCcccccCCccccC---------CCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccc
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGN---------LRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDL 169 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 169 (524)
+. +|+.|++++|++.+.+|..+.. +++|+.|++++|+++ .+|..+..+++|++|++++|.++ .+|..+
T Consensus 149 l~-~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l 225 (328)
T 4fcg_A 149 LN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225 (328)
T ss_dssp CT-TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred Cc-CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence 88 9999999998888888877654 888888888888887 66777888888888888888887 456667
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCE
Q 040301 170 CHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRV 249 (524)
Q Consensus 170 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 249 (524)
..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 78888888888888877777777888888888888887777777777788888888888888777778888888888887
Q ss_pred EEcCCCcCc
Q 040301 250 LDLSRNQLS 258 (524)
Q Consensus 250 L~l~~n~l~ 258 (524)
+++..+.+.
T Consensus 306 l~l~~~~~~ 314 (328)
T 4fcg_A 306 ILVPPHLQA 314 (328)
T ss_dssp EECCGGGSC
T ss_pred EeCCHHHHH
Confidence 777766544
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=7.4e-29 Score=253.67 Aligned_cols=249 Identities=21% Similarity=0.190 Sum_probs=169.1
Q ss_pred CEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEeccc
Q 040301 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY 158 (524)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 158 (524)
..++.+++.++. +|..+. .+++.|++++|.+++..+..|.++++|+.|+|++|++.++.+..|.++++|++|+|++
T Consensus 57 ~~v~c~~~~l~~-iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcCc-cCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455555555552 332221 2556666666666655566666666666666666666666666666666666666666
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC-cCCCccChhccCCCCCCEEEcCCCcCcccC
Q 040301 159 NNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSN-KLTSSIPSSLWSLEYILMINLSSNSLNDSL 237 (524)
Q Consensus 159 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 237 (524)
|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|++++| .+....+..+..+++|+.|++++|.+.+ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 6666555555666666666666666666555556666777777777663 3433333456677777777777777764 3
Q ss_pred CcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 040301 238 PSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316 (524)
Q Consensus 238 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 316 (524)
| .+..+++|+.|++++|.+++.. ..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 4667777888888888877664 5677778888888888888877777788888888888888888877677777888
Q ss_pred CCCeEEccCCcCccccC
Q 040301 317 HLKQFNASHNRLEGKIL 333 (524)
Q Consensus 317 ~L~~l~l~~n~l~~~~~ 333 (524)
+|+.+++++|++.|.+.
T Consensus 291 ~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCCEEECCSSCEECSTT
T ss_pred CCCEEEccCCCcCCCCC
Confidence 88888888888877654
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=9.2e-30 Score=244.07 Aligned_cols=226 Identities=20% Similarity=0.228 Sum_probs=155.3
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.-+.++.++++++ .+|..+ .++|++|++++|.++.++. ..+.++++|++|++++|.+.+..|..+..+.
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 12 PKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPA--------ASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp SSCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECT--------TTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCH--------HHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 3478888888887 666554 4588888888888877653 5677888888888888888877677777766
Q ss_pred ccccEEEeccCc-ccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 101 ASFQNFYAFNCK-LKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 101 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
+|+.|++++|. +....|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 81 -~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 81 -LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp -TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred -CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 77777777775 6655566677777777777777777766666677777777777777777655555566666677777
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
+++|++++..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 7666666555555666666666666666666555566666666666666666666544444555666666666666554
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.4e-28 Score=249.00 Aligned_cols=261 Identities=28% Similarity=0.335 Sum_probs=142.9
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++|+.||+++|++++ +|.. +++|++|++++|++++++.. .++|++|++++|.+.+ +| .+..+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~------------~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL------------PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC------------CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC------------CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 678888888888885 6643 35677777777777654311 0345555555555553 33 24444
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc----------------
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG---------------- 163 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---------------- 163 (524)
. +|+.|++++|++++ +|.. ..+|++|++++|++.+ +| .++.+++|++|++++|.+++
T Consensus 153 ~-~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 153 S-FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225 (454)
T ss_dssp T-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred C-CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence 4 55555555555443 2322 1344555555555443 22 34444455555554444442
Q ss_pred ---cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcC
Q 040301 164 ---SIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSN 240 (524)
Q Consensus 164 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 240 (524)
.+| .+..+++|+.|++++|++.+ +|.. .++|+.|++++|.+.+ +|.. +++|+.|++++|.+.+ ++.
T Consensus 226 ~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~- 294 (454)
T 1jl5_A 226 ILEELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE- 294 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC-
T ss_pred cCCccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC-
Confidence 333 24444555555555554442 2221 2444555555554442 2221 2445555555555543 111
Q ss_pred ccCCCCCCEEEcCCCcCcccccccccc-CCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 040301 241 IQTLKVLRVLDLSRNQLSGDISTIGAL-VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLK 319 (524)
Q Consensus 241 ~~~l~~L~~L~l~~n~l~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 319 (524)
..++|+.|++++|.+++.+ .+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+
T Consensus 295 --~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp --CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred --cCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 0135555555555554322 22 478888888888885 5543 578888888888888 4555 467888
Q ss_pred eEEccCCcCcc
Q 040301 320 QFNASHNRLEG 330 (524)
Q Consensus 320 ~l~l~~n~l~~ 330 (524)
.+++++|++++
T Consensus 361 ~L~L~~N~l~~ 371 (454)
T 1jl5_A 361 QLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSS
T ss_pred EEECCCCCCCc
Confidence 88888888887
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.3e-29 Score=252.85 Aligned_cols=230 Identities=23% Similarity=0.250 Sum_probs=143.0
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+++.|++++|++....+..|.++++|+.|+|++|.+..+.+..|.++++|++|+|++|.++...+..|..+++|+.|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44455555555544444555555555555555555555555555555555555555555554444455555555555555
Q ss_pred CCcccccCCccccCCCCCCEEEccCC-cCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSN-KLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
+|.+....+..|..+++|+.|++++| .+....+..|..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence 55555444455555666666666653 3332223355666666666666666653 33 356666777777777777665
Q ss_pred c-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 261 I-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 261 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
. ..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.+++++|++.|.+.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 4 566677777777777777777667777777788888888888876666677777888888888888777654
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-28 Score=251.23 Aligned_cols=228 Identities=22% Similarity=0.223 Sum_probs=146.6
Q ss_pred CCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEe
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLS 155 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 155 (524)
++|++|+|++|++.+..+..|..+. +|+.|++++|.+.+..+..|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3455555555555555555555554 555555555555555555566666666666666666655555566666666666
Q ss_pred cccCcccccCCccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCc
Q 040301 156 LKYNNLEGSIPYDLCHLKLMYGIRLTG-NKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN 234 (524)
Q Consensus 156 L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 234 (524)
|++|.++...+..|..+++|+.|++++ |.+....+..|..+++|+.|++++|.+.+. | .+..+++|+.|+|++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 666666655555566666666666666 333333334566666777777777766632 3 3566677777777777777
Q ss_pred ccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCC
Q 040301 235 DSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306 (524)
Q Consensus 235 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 306 (524)
+..|..|..+++|+.|++++|.+++.. ..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 666667777777777777777776654 556777777777777777776666667778888888888887753
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=250.04 Aligned_cols=247 Identities=21% Similarity=0.216 Sum_probs=139.6
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
....++.++++++ .+|..+. ++++.|+|++|+++.+.. ..|.++++|++|+|++|.+....+..|..+.
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKV--------NSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECT--------TTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCH--------HHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 3455666666665 5555443 456666666666655433 4555666666666666666554444444444
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|+++...+..|.++++|++|++++|++....+. .|..+++|+.|++
T Consensus 113 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------~~~~l~~L~~L~l 167 (440)
T 3zyj_A 113 -NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY------------------------AFNRIPSLRRLDL 167 (440)
T ss_dssp -SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT------------------------TTTTCTTCCEEEC
T ss_pred -cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH------------------------HhhhCcccCEeCC
Confidence 455555555544444344444444455555444444444444 4444455555555
Q ss_pred cCC-cccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc
Q 040301 181 TGN-KLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 181 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
++| .+....+..|..+++|+.|++++|.++ .+| .+..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+++
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 442 223223334555555555555555555 223 24555666666666666665556666666666666666666665
Q ss_pred cc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 040301 260 DI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS 305 (524)
Q Consensus 260 ~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 305 (524)
.. ..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 54 45666667777777777777655666677777777777777765
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.5e-29 Score=239.26 Aligned_cols=227 Identities=24% Similarity=0.226 Sum_probs=124.5
Q ss_pred CEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEeccc
Q 040301 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY 158 (524)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 158 (524)
++++.+++.+.. +|..+ ..+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 566666666663 23222 12555555555555554445555555555555555555554455555555555555555
Q ss_pred Cc-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccC
Q 040301 159 NN-LEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSL 237 (524)
Q Consensus 159 n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 237 (524)
|. ++...+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 90 n~~l~~~~~~~~~~l------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 90 NAQLRSVDPATFHGL------------------------GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp CTTCCCCCTTTTTTC------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccccCHHHhcCC------------------------cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 54 443334444444 45555555555444444444445555555555555554444
Q ss_pred CcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 040301 238 PSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316 (524)
Q Consensus 238 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 316 (524)
+..+..+++|++|++++|.+++.+ ..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..++
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 444555555555555555555444 2355556666666666666655566666666666666666666655555566666
Q ss_pred CCCeEEccCCcCccccC
Q 040301 317 HLKQFNASHNRLEGKIL 333 (524)
Q Consensus 317 ~L~~l~l~~n~l~~~~~ 333 (524)
+|+.+++++|++.+.++
T Consensus 226 ~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TCCEEECCSSCEECSGG
T ss_pred ccCEEeccCCCccCCCC
Confidence 66666666666665544
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.4e-27 Score=241.59 Aligned_cols=284 Identities=26% Similarity=0.324 Sum_probs=215.0
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+++.|++++|++++ +|.. .++|++|++++|.+++++ .. +++|++|++++|.+.+... ..
T Consensus 72 ~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~lp---------~~---~~~L~~L~l~~n~l~~l~~-----~~ 130 (454)
T 1jl5_A 72 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTELP---------EL---PQSLKSLLVDNNNLKALSD-----LP 130 (454)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCC---------CC---CTTCCEEECCSSCCSCCCS-----CC
T ss_pred CCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCccc---------cc---cCCCcEEECCCCccCcccC-----CC
Confidence 56999999999994 5542 368999999999998754 22 3789999999999996422 21
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
.+|++|++++|++++ +| .|+++++|++|++++|++++ +|.. .++|++|++++|.+++ +| .+..+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 389999999999996 67 59999999999999999986 4543 3599999999999996 56 6899999999999
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
++|.+.+ +|... ++|+.|++++|.+. .+|. +..+++|+.|++++|++.+ +|.. +++|+.|++++|.+++.
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc
Confidence 9999885 44332 58889999988887 5664 7888888899998888875 4432 36777777777777664
Q ss_pred cccccccCCCCEEEccCCcccC--CCccc-------------ccCC-CCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 261 ISTIGALVDLETLSLASNQFQG--PIPES-------------VGSL-ISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 261 ~~~~~~l~~L~~L~L~~N~l~~--~~~~~-------------~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
+.. .++|+.|++++|++++ ..|.. +..+ ++|+.|++++|++++ +|.. +++|+.++++
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred Ccc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 432 2455555555555554 12211 1123 589999999999985 5554 5889999999
Q ss_pred CCcCccccCCCCcCCCCCcccccCCCCCC
Q 040301 325 HNRLEGKILVKGSFKNFSAESFFGNYALC 353 (524)
Q Consensus 325 ~n~l~~~~~~~~~~~~~~~~~~~~n~~lc 353 (524)
+|.++. +|. .+..+..+++.+|....
T Consensus 346 ~N~l~~-lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 346 FNHLAE-VPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSS
T ss_pred CCcccc-ccc--hhhhccEEECCCCCCCc
Confidence 999985 444 46778888888886543
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3e-28 Score=237.95 Aligned_cols=232 Identities=23% Similarity=0.282 Sum_probs=117.4
Q ss_pred CCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEe
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLS 155 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 155 (524)
++++.|+|++|.+. .+|..+..+. +|+.|++++|.+. .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 44555555555555 3344444444 5555555555555 45555555555555555555555 4455555555555555
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcc
Q 040301 156 LKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLND 235 (524)
Q Consensus 156 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 235 (524)
+++|++.+.+|..+... ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 55555554555443320 00111223444444444444444 334444444444444444444442
Q ss_pred cCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccC
Q 040301 236 SLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLET 314 (524)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 314 (524)
+|..+..+++|++|++++|.+.+.. ..+..+++|+.|+|++|++.+.+|..+..+++|+.|++++|.+.+.+|+.+..
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 3333444444444444444443322 33444555555555555555556666666666666666666666666666666
Q ss_pred CCCCCeEEccCCcC
Q 040301 315 LSHLKQFNASHNRL 328 (524)
Q Consensus 315 l~~L~~l~l~~n~l 328 (524)
+++++.+++..+.+
T Consensus 300 L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 300 LPANCIILVPPHLQ 313 (328)
T ss_dssp SCTTCEEECCGGGS
T ss_pred ccCceEEeCCHHHH
Confidence 66666666665543
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=5.7e-27 Score=246.11 Aligned_cols=262 Identities=25% Similarity=0.337 Sum_probs=220.7
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+++.|++++|+++ .+|..+. ++|++|++++|.++.++ . .+++|++|+|++|++++ +|. .+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp---------~---~l~~L~~L~Ls~N~l~~-lp~---~l 100 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP---------A---LPPELRTLEVSGNQLTS-LPV---LP 100 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC---------C---CCTTCCEEEECSCCCSC-CCC---CC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC---------C---cCCCCCEEEcCCCcCCc-CCC---CC
Confidence 47999999999999 8888776 79999999999998654 2 46899999999999995 444 44
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|+.|++++|.+++ +|. .+++|+.|++++|+++.+ |. .+++|++|++++|.+++ +|. .+++|+.|+
T Consensus 101 ~-~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~ 167 (622)
T 3g06_A 101 P-GLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLW 167 (622)
T ss_dssp T-TCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred C-CCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEE
Confidence 5 99999999999985 444 678999999999999864 43 35899999999999984 444 357899999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
+++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.+.. +|. .+++|+.|++++|.+++
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS 235 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc
Confidence 99999985 55 456899999999999985 4443 5789999999999984 554 35889999999999998
Q ss_pred ccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 260 DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 260 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
.+ ..+++|+.|+|++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 76 45689999999999999 4665 6789999999999999 778999999999999999999987654
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=8.9e-30 Score=247.29 Aligned_cols=247 Identities=19% Similarity=0.208 Sum_probs=169.6
Q ss_pred CCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCccc-ccCCcccc-------CCCCCCeEEcccCcCcccCCcc
Q 040301 73 TNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLK-GNIPQEIG-------NLRGLTLLSLFNNDLNGTISPT 144 (524)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~ 144 (524)
...++|++|++++|.+ .+|..+.. .|+.|++++|.+. ..+|..+. ++++|++|++++|++++..|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3445677777777777 45555443 3666777777763 34555554 6777777777777777666665
Q ss_pred c--cCCCCCCeEecccCcccccCCccccCC-----CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCc--cCh
Q 040301 145 M--GRLKQLRGLSLKYNNLEGSIPYDLCHL-----KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSS--IPS 215 (524)
Q Consensus 145 ~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~ 215 (524)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 6777777777777777755 6666655 7777777777777766667777777777777777776543 233
Q ss_pred hc--cCCCCCCEEEcCCCcCcc---cCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCcccCCCcccc
Q 040301 216 SL--WSLEYILMINLSSNSLND---SLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQGPIPESV 288 (524)
Q Consensus 216 ~~--~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~ 288 (524)
.+ ..+++|+.|++++|.+.+ .....+..+++|+.|++++|.+++.+ ..+..+++|+.|+|++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 667777777777777762 11123346677788888888777654 34555677888888888887 566665
Q ss_pred cCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcc
Q 040301 289 GSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 289 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 330 (524)
. ++|+.|++++|++++. |. +..+++|+.+++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 7788888888888755 55 7778888888888888765
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1e-29 Score=246.88 Aligned_cols=250 Identities=21% Similarity=0.233 Sum_probs=212.0
Q ss_pred ccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCC-CCCChhHh-------cCcccccEEEecc
Q 040301 39 TFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG-GILPPVIG-------NFSASFQNFYAFN 110 (524)
Q Consensus 39 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~~~~~L~~L~l~~ 110 (524)
.++..++|++|++++|.+ .++ ..+... |++|+|++|.+. ..+|..+. .+. +|++|++++
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p---------~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~ 104 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADL---------GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLEN 104 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCC---------HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEE
T ss_pred EEccCCCceeEeeccccc-ccH---------HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccC
Confidence 456778899999999999 443 333332 899999999994 45777665 676 999999999
Q ss_pred CcccccCCccc--cCCCCCCeEEcccCcCcccCCccccCC-----CCCCeEecccCcccccCCccccCCCCCCEEEccCC
Q 040301 111 CKLKGNIPQEI--GNLRGLTLLSLFNNDLNGTISPTMGRL-----KQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGN 183 (524)
Q Consensus 111 n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 183 (524)
|.+++..|..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..+..+++|+.|++++|
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 99999899886 8999999999999999977 7777777 99999999999999888899999999999999999
Q ss_pred ccccc--CCccc--cCCCCCCEEEccCCcCCCc--cC-hhccCCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEEcCCC
Q 040301 184 KLSGH--IPPCL--ASLTSLRELHLGSNKLTSS--IP-SSLWSLEYILMINLSSNSLNDSLP-SNIQTLKVLRVLDLSRN 255 (524)
Q Consensus 184 ~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n 255 (524)
++.+. .+..+ ..+++|++|++++|.+.+. ++ ..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 97654 23344 7899999999999999832 22 445688999999999999998664 55677899999999999
Q ss_pred cCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCC
Q 040301 256 QLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306 (524)
Q Consensus 256 ~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 306 (524)
.++..+..+. ++|+.|+|++|++++. |. +..+++|+.|++++|++++
T Consensus 264 ~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 264 GLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9997776655 8899999999999975 66 8999999999999999985
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=5.2e-30 Score=249.54 Aligned_cols=266 Identities=21% Similarity=0.196 Sum_probs=168.5
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
+++..+++.+.+.......+..+++|++|+|++|+++.+.. ..+.++++|++|+|++|.+.+..+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~------- 75 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA--------ADLAPFTKLELLNLSSNVLYETLD------- 75 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCH--------HHHTTCTTCCEEECTTSCCEEEEE-------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCH--------HHhhCCCcCCEEECCCCcCCcchh-------
Confidence 35555566666554444444455566666666666554321 345555556666666555553322
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
|..+++|++|++++|++++.. ..++|++|++++|.+++..+.. +++|+.|++
T Consensus 76 --------------------~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l 127 (317)
T 3o53_A 76 --------------------LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYL 127 (317)
T ss_dssp --------------------ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred --------------------hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence 445555555555555555322 2255666666666665443322 355666666
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhc-cCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSL-WSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+. +. ...+++|++|++++|.+++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence 6666665555566666677777777777665545544 3567777777777777653 22 2347788888888888887
Q ss_pred ccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC-CCCcccccCCCCCCeEEccCC-cCcccc
Q 040301 260 DISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS-GKIPKSLETLSHLKQFNASHN-RLEGKI 332 (524)
Q Consensus 260 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~l~l~~n-~l~~~~ 332 (524)
.+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +..|..+..+++|+.+++.++ .+++..
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 7766778888888888888888 46777888888888888888887 677788888888888888743 344433
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=7.7e-31 Score=269.39 Aligned_cols=308 Identities=23% Similarity=0.190 Sum_probs=216.7
Q ss_pred CCccEEEccCCcccccCCcc-cccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 20 QIYWVMDLSSNSFSGHIPNT-FGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
++|+.||+++|+++...... +..+++|++|++++|+++.... ..++ ..+..+++|++|+|++|.+....+..+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--~~l~--~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--KDIS--SALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--HHHH--HHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--HHHH--HHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 56888888888887554333 6778888888888888774310 0111 55667788888888888887654544444
Q ss_pred Ccc----cccEEEeccCcccc----cCCccccCCCCCCeEEcccCcCcccCCccc-----cCCCCCCeEecccCccccc-
Q 040301 99 FSA----SFQNFYAFNCKLKG----NIPQEIGNLRGLTLLSLFNNDLNGTISPTM-----GRLKQLRGLSLKYNNLEGS- 164 (524)
Q Consensus 99 ~~~----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~i~~~- 164 (524)
... +|++|++++|.++. .++..+..+++|++|++++|.++...+..+ ...++|++|++++|.+++.
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 222 48888888888874 457778888888888888888875433322 2356788888888888763
Q ss_pred ---CCccccCCCCCCEEEccCCcccccCCcccc-----CCCCCCEEEccCCcCCCc----cChhccCCCCCCEEEcCCCc
Q 040301 165 ---IPYDLCHLKLMYGIRLTGNKLSGHIPPCLA-----SLTSLRELHLGSNKLTSS----IPSSLWSLEYILMINLSSNS 232 (524)
Q Consensus 165 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~ 232 (524)
++..+..+++|+.|++++|.+.+..+..+. ..++|+.|++++|.++.. ++..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 355666778888888888887654333332 356888888888888753 46667778888888888888
Q ss_pred CcccC-----CcCccCCCCCCEEEcCCCcCcc-----ccccccccCCCCEEEccCCcccCCCccccc-----CCCCCCEE
Q 040301 233 LNDSL-----PSNIQTLKVLRVLDLSRNQLSG-----DISTIGALVDLETLSLASNQFQGPIPESVG-----SLISLESL 297 (524)
Q Consensus 233 l~~~~-----~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L 297 (524)
+.+.. +..+..+++|++|++++|.+++ .+..+..+++|+.|++++|++.+..+..+. ..++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 76532 2223357888888888888876 335566678888888888887654333332 23688888
Q ss_pred eCCCCcCCCC----CcccccCCCCCCeEEccCCcCccc
Q 040301 298 DLSGNNLSGK----IPKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 298 ~l~~N~l~~~----~~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 8888888755 455666778888888888887654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-29 Score=246.65 Aligned_cols=241 Identities=19% Similarity=0.169 Sum_probs=203.1
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
.++.++++++.+...++..+...+ +|++|++++|.+++..|..|.++++|++|++++|++++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 355666677766644444444444 88888888888887777889999999999999999987654 899999999999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
++|.+++.. ..++|+.|++++|++.+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999998432 4489999999999998665443 67899999999999987777899999999999999999987
Q ss_pred CCcCc-cCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCC
Q 040301 237 LPSNI-QTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 315 (524)
Q Consensus 237 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 315 (524)
.+..+ ..+++|++|++++|.+++.+. ...+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 66666 478999999999999987753 3358999999999999995 5556899999999999999999 578889999
Q ss_pred CCCCeEEccCCcCccc
Q 040301 316 SHLKQFNASHNRLEGK 331 (524)
Q Consensus 316 ~~L~~l~l~~n~l~~~ 331 (524)
++|+.+++++|++.+.
T Consensus 237 ~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTCCEEECTTCCCBHH
T ss_pred CCCCEEEccCCCccCc
Confidence 9999999999999843
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.9e-30 Score=265.12 Aligned_cols=303 Identities=20% Similarity=0.201 Sum_probs=163.7
Q ss_pred CCccEEEccCCcccc----cCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCC----CCCEEEccCCCCCC-
Q 040301 20 QIYWVMDLSSNSFSG----HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCR----HLKALSLGSNPLGG- 90 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~n~l~~- 90 (524)
++|+.|++++|++++ .++..+..+++|++|+|++|.+++... . .....++ +|++|+|++|.++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-----~--~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV-----H--CVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH-----H--HHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH-----H--HHHHHHhhCCCceeEEEccCCCCCHH
Confidence 567777777777663 234555666777777777776654210 0 0111222 56677777666663
Q ss_pred ---CCChhHhcCcccccEEEeccCcccccCCcccc-----CCCCCCeEEcccCcCcccC----CccccCCCCCCeEeccc
Q 040301 91 ---ILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG-----NLRGLTLLSLFNNDLNGTI----SPTMGRLKQLRGLSLKY 158 (524)
Q Consensus 91 ---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~ 158 (524)
.++..+..++ +|++|++++|.++...+..+. ..++|++|++++|++++.. +..+..+++|++|++++
T Consensus 101 ~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 101 GCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 2355555665 666666666666543333222 2445666666666666432 33445556666666666
Q ss_pred CcccccCCcccc-----CCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcCCCcc-----ChhccCCCCCC
Q 040301 159 NNLEGSIPYDLC-----HLKLMYGIRLTGNKLSGH----IPPCLASLTSLRELHLGSNKLTSSI-----PSSLWSLEYIL 224 (524)
Q Consensus 159 n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~ 224 (524)
|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+.... +..+..+++|+
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 666543333332 244666666666666542 3444555666666666666654321 11222456666
Q ss_pred EEEcCCCcCccc----CCcCccCCCCCCEEEcCCCcCcccc-cccc-----ccCCCCEEEccCCcccCC----CcccccC
Q 040301 225 MINLSSNSLNDS----LPSNIQTLKVLRVLDLSRNQLSGDI-STIG-----ALVDLETLSLASNQFQGP----IPESVGS 290 (524)
Q Consensus 225 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~-----~l~~L~~L~L~~N~l~~~----~~~~~~~ 290 (524)
.|++++|.+++. ++..+..+++|++|++++|.+.+.. ..+. ..++|+.|++++|.+++. ++..+..
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 666666666542 3444555666666666666654322 1111 124566666666666543 2344455
Q ss_pred CCCCCEEeCCCCcCCCCCcccccC-----CCCCCeEEccCCcCcc
Q 040301 291 LISLESLDLSGNNLSGKIPKSLET-----LSHLKQFNASHNRLEG 330 (524)
Q Consensus 291 l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~l~l~~n~l~~ 330 (524)
+++|+.|++++|.+++..+..+.. .++|+.|++++|.+++
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 566666666666665443333321 4566666666666553
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-28 Score=253.82 Aligned_cols=233 Identities=21% Similarity=0.202 Sum_probs=133.0
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
+|++|+|++|.+.+..|..|..++ +|+.|++++|.+++..| |..+++|+.|++++|.+++..+ .++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 566666666666655555555555 55555555555554443 5666666666666666654322 256666666
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhcc-CCCCCCEEEcCCCcCcc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLW-SLEYILMINLSSNSLND 235 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 235 (524)
++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|+|++|.+.+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66666644332 235566666666666655555566666666666666666655555544 45666666666666654
Q ss_pred cCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCC-CCCcccccC
Q 040301 236 SLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLS-GKIPKSLET 314 (524)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~ 314 (524)
. +. ...+++|+.|++++|.+++.+..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 184 V-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred c-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 3 21 224566666666666666555555556666666666666663 4555555666666666666665 344445555
Q ss_pred CCCCCeEEc
Q 040301 315 LSHLKQFNA 323 (524)
Q Consensus 315 l~~L~~l~l 323 (524)
++.++.+++
T Consensus 261 l~~L~~l~~ 269 (487)
T 3oja_A 261 NQRVQTVAK 269 (487)
T ss_dssp CHHHHHHHH
T ss_pred CCCCcEEec
Confidence 544444443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=7.4e-26 Score=237.65 Aligned_cols=255 Identities=26% Similarity=0.287 Sum_probs=212.1
Q ss_pred CCCCcCCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCC
Q 040301 13 DSPSIPHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGIL 92 (524)
Q Consensus 13 ~~~~~~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 92 (524)
.+|..-+++|+.|++++|+|+ .+|. .+++|++|+|++|+++.++ . .+++|++|++++|.+.+..
T Consensus 54 ~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp---------~---~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 54 TLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLP---------V---LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp CCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCC---------C---CCTTCCEEEECSCCCCCCC
T ss_pred ccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCC---------C---CCCCCCEEECcCCcCCCCC
Confidence 334433489999999999999 6666 5789999999999998653 2 5789999999999999654
Q ss_pred ChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCC
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHL 172 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 172 (524)
+ .+. +|+.|++++|+++. +|.. +++|++|++++|++++. |. .+++|+.|++++|.+++ +| ..+
T Consensus 118 ~----~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~ 180 (622)
T 3g06_A 118 A----LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLP 180 (622)
T ss_dssp C----CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred C----CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccC
Confidence 3 344 89999999999985 5543 58999999999999854 33 35789999999999994 55 457
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEc
Q 040301 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252 (524)
Q Consensus 173 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 252 (524)
++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.. +++|+.|++++|.+++ +| ..+++|+.|++
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 899999999999985 4443 478999999999998 44543 5889999999999986 55 46689999999
Q ss_pred CCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 040301 253 SRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316 (524)
Q Consensus 253 ~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 316 (524)
++|.++.++. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 249 s~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 249 SGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999997766 5789999999999999 6788999999999999999999988888766544
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.5e-28 Score=248.73 Aligned_cols=234 Identities=20% Similarity=0.165 Sum_probs=147.1
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCC
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNL 124 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 124 (524)
+|++|+|++|.++.++. ..+.++++|++|+|++|.+++..| +..++ +|+.|++++|.+++.. ..
T Consensus 35 ~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~-----~~ 98 (487)
T 3oja_A 35 NVKELDLSGNPLSQISA--------ADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELL-----VG 98 (487)
T ss_dssp GCCEEECCSSCCCCCCG--------GGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEE-----EC
T ss_pred CccEEEeeCCcCCCCCH--------HHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCC-----CC
Confidence 45555555555544321 344455555555555555544333 44444 5555555555554322 12
Q ss_pred CCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCcccc-CCCCCCEEE
Q 040301 125 RGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLA-SLTSLRELH 203 (524)
Q Consensus 125 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ 203 (524)
++|+.|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 5666666666666654433 345667777777777666666666677777777777777666665554 567777777
Q ss_pred ccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCccc-C
Q 040301 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQ-G 282 (524)
Q Consensus 204 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~-~ 282 (524)
+++|.+++. + ....+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++.+..+..+++|+.|++++|++. +
T Consensus 176 Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 176 LQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 777777644 2 22346777777777777775 444477777888888888888777766777788888888888877 5
Q ss_pred CCcccccCCCCCCEEeCC
Q 040301 283 PIPESVGSLISLESLDLS 300 (524)
Q Consensus 283 ~~~~~~~~l~~L~~L~l~ 300 (524)
.+|..+..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 566777777777776664
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=8.7e-26 Score=215.29 Aligned_cols=208 Identities=22% Similarity=0.202 Sum_probs=126.0
Q ss_pred CCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040301 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205 (524)
Q Consensus 126 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 205 (524)
+|++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444445555555555555555554444445555555555555555554444555555555555555
Q ss_pred CCcCCCccChhccCCCCCCEEEcCCCcCccc-CCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCC----EEEccCCc
Q 040301 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDS-LPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLE----TLSLASNQ 279 (524)
Q Consensus 206 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~----~L~L~~N~ 279 (524)
+|.+.+..+..+..+++|+.|++++|.+.+. +|..+..+++|++|++++|.+++.+ ..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555544444455566666666666665542 4556666666666666666666544 3444444444 77888888
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
+.+..+..+ ...+|+.|++++|++++..+..+..+++|+.+++++|+++|.++.
T Consensus 189 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 189 MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 875444444 344788888888888866666678888888888888888887654
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.3e-25 Score=214.08 Aligned_cols=207 Identities=20% Similarity=0.167 Sum_probs=138.1
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+++.|++++|.+++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 44455555555544444455556666666666666665555556666666666666666665555566666666666666
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCc-cChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCC----EEEcCCCc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSS-IPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLR----VLDLSRNQ 256 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~n~ 256 (524)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655554566667777777777776642 466677777777777777777665555565555555 78888888
Q ss_pred CccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCC
Q 040301 257 LSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308 (524)
Q Consensus 257 l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 308 (524)
+++.+.......+|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 8776654444557888999999888766666788999999999999988543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-24 Score=206.72 Aligned_cols=203 Identities=25% Similarity=0.292 Sum_probs=125.6
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+.+.+|+++++++ .+|..+. ++|++|++++|+++.++. ..+.++++|++|++++|.+....+..|..+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPS--------KAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCT--------TSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCH--------HHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 46788999999998 6776664 579999999999887653 578888899999999888885555445555
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|++|++++|.+....+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++.
T Consensus 85 ~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------- 148 (270)
T 2o6q_A 85 K-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL--------------- 148 (270)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------
T ss_pred C-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc---------------
Confidence 4 566666665555544444555555555555555555554444555555555555555555433
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
.+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 149 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 149 ---------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ---------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 3333444555555555555555444444555555555555555555444444555666666666666554
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.3e-24 Score=204.66 Aligned_cols=204 Identities=22% Similarity=0.237 Sum_probs=125.1
Q ss_pred CCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 040301 127 LTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS 206 (524)
Q Consensus 127 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 206 (524)
.+.+++++++++. +|..+. ++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3445555555542 222221 3455555555555544444455555555555555555544444445556666666666
Q ss_pred CcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCc
Q 040301 207 NKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIP 285 (524)
Q Consensus 207 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 285 (524)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.+ ..+..+++|+.|+|++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 6665444455556666666666666666555555666667777777777666655 335667777777777777776656
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 286 ESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 286 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
..|..+++|+.|++++|++++..+..+..+++|+.+++++|++.+.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 667777888888888888876656667777888888888888777654
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=9e-26 Score=214.55 Aligned_cols=138 Identities=25% Similarity=0.229 Sum_probs=75.1
Q ss_pred cccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
.+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 34455556666666666655555555555666666666665554444445555555555555555554444445555555
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcC
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 257 (524)
+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 5555555555544444445555555555555555544444445555555555555543
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.7e-24 Score=205.97 Aligned_cols=205 Identities=22% Similarity=0.177 Sum_probs=158.2
Q ss_pred ccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040301 121 IGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLR 200 (524)
Q Consensus 121 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 200 (524)
++++++|+.+++++|.++. +|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 5667777777777777774 333332 577777888777777667777777788888888877765433 26677888
Q ss_pred EEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCc
Q 040301 201 ELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQ 279 (524)
Q Consensus 201 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~ 279 (524)
.|++++|.+. .+|..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++.+ ..+..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 8888888887 56777778888888888888888766677888888888888888888776 456778888888888888
Q ss_pred ccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcccc
Q 040301 280 FQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKI 332 (524)
Q Consensus 280 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~ 332 (524)
+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|++.|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 88666666778889999999999988 67777778888999999999988755
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.9e-25 Score=210.16 Aligned_cols=224 Identities=21% Similarity=0.219 Sum_probs=156.4
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
.+..+++..+.+++. ..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+. ..+..+.
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~----------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~ 85 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV----------QGIQYLPNVRYLALGGNKLHDI--SALKELT 85 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC----------TTGGGCTTCCEEECTTSCCCCC--GGGTTCT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc----------cccccCCCCcEEECCCCCCCCc--hhhcCCC
Confidence 445556666666533 2355677777777777777654 3456677777777777777653 3566665
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 86 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 86 -NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp -TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 7777777777777666666777777777777777777666666777777777777777777666666777777778888
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.|++..|.+++.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGG
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCc
Confidence 7777776666666777778888888887776666667777788888888777654 244677777777777664
Q ss_pred c-ccccc
Q 040301 261 I-STIGA 266 (524)
Q Consensus 261 ~-~~~~~ 266 (524)
. ..++.
T Consensus 238 ip~~~~~ 244 (272)
T 3rfs_A 238 VRNSAGS 244 (272)
T ss_dssp BBCTTSC
T ss_pred ccCcccc
Confidence 4 34443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=5.2e-24 Score=204.01 Aligned_cols=154 Identities=24% Similarity=0.187 Sum_probs=74.5
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+++.|++++|.+++..+..|.++++|+.|++++|.+++..+. +.+++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 444444444444444445555556666666666665543322 45555555555555555 344444455555555555
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
+|++++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|+++
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 55554444444444555555555555544333333444444444444444444333333334444444444444443
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2e-25 Score=221.25 Aligned_cols=254 Identities=20% Similarity=0.179 Sum_probs=163.4
Q ss_pred EEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCC-CCCEEEccCCCCCCCCChhHhcC---
Q 040301 24 VMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCR-HLKALSLGSNPLGGILPPVIGNF--- 99 (524)
Q Consensus 24 ~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~--- 99 (524)
.++++.|++++.+|..+...++|++|+|++|.+++... ..+...+.+++ +|++|+|++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST----VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHH----HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 47899999998888877777779999999999887531 00113456777 89999999999998877777775
Q ss_pred --cccccEEEeccCcccccCCcccc----CC-CCCCeEEcccCcCcccCCccc----cC-CCCCCeEecccCcccccC--
Q 040301 100 --SASFQNFYAFNCKLKGNIPQEIG----NL-RGLTLLSLFNNDLNGTISPTM----GR-LKQLRGLSLKYNNLEGSI-- 165 (524)
Q Consensus 100 --~~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~i~~~~-- 165 (524)
. +|++|++++|.+++..+..+. .+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++..
T Consensus 78 ~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 78 IPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp SCT-TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred cCC-CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 5 888888888888876666443 33 788888888888876555443 33 357888888888887432
Q ss_pred --CccccCCC-CCCEEEccCCcccccCCccc----cCC-CCCCEEEccCCcCCCc----cChhccC-CCCCCEEEcCCCc
Q 040301 166 --PYDLCHLK-LMYGIRLTGNKLSGHIPPCL----ASL-TSLRELHLGSNKLTSS----IPSSLWS-LEYILMINLSSNS 232 (524)
Q Consensus 166 --~~~~~~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~ 232 (524)
+..+..++ +|+.|++++|++++..+..+ ..+ ++|+.|++++|.+... ++..+.. .++|+.|+|++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 33344454 77777777777765544333 333 4777777777776642 3334443 3466666666666
Q ss_pred CcccCC----cCccCCCCCCEEEcCCCcCcccc--------ccccccCCCCEEEccCCcccC
Q 040301 233 LNDSLP----SNIQTLKVLRVLDLSRNQLSGDI--------STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 233 l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~l~~L~~L~L~~N~l~~ 282 (524)
+.+..+ ..+..+++|+.|++++|.+.+.. ..+..+++|+.|++++|++..
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 654322 22344555666666655532211 223344444555555555443
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=3.9e-25 Score=217.09 Aligned_cols=256 Identities=15% Similarity=0.236 Sum_probs=135.4
Q ss_pred CCccEEEccCCcccccCCcccccc--cCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC-CChhH
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNL--RHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI-LPPVI 96 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~ 96 (524)
..++.+|+++|++. +..+..+ ++++.|++++|.+.+.. ..+.++++|++|++++|.+.+. ++..+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~---------~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPL---------AEHFSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCC---------CSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccc---------hhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence 34777888877776 3455666 67788888877776543 2344567777777777776644 45555
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccC-cCccc-CCccccCCCCCCeEecccC-ccccc-CCccccCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNN-DLNGT-ISPTMGRLKQLRGLSLKYN-NLEGS-IPYDLCHL 172 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l 172 (524)
..++ +|++|++++|.+++..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..+
T Consensus 115 ~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 115 SQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 5554 5666666666555555555555566666666555 34431 3333445555555555555 45432 33334444
Q ss_pred C-CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCC-CccChhccCCCCCCEEEcCCCc-CcccCCcCccCCCCCCE
Q 040301 173 K-LMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLT-SSIPSSLWSLEYILMINLSSNS-LNDSLPSNIQTLKVLRV 249 (524)
Q Consensus 173 ~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 249 (524)
+ +|+.|++++|.+ .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++
T Consensus 194 ~~~L~~L~l~~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 194 SETITQLNLSGYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp CTTCCEEECCSCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ccCCCEEEeCCCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 4 444444444421 222 2233444445555555555555 44344444555555555
Q ss_pred EEcCCCc-Ccccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCccccc
Q 040301 250 LDLSRNQ-LSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLE 313 (524)
Q Consensus 250 L~l~~n~-l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 313 (524)
|++++|. +.... ..+..+++|+.|++++| +....-..+. .++..|++++|++++..|..+.
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 5555553 21111 23455566666666665 3321111111 1244455666666666665544
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.1e-23 Score=196.10 Aligned_cols=196 Identities=20% Similarity=0.177 Sum_probs=134.5
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC-CCCCCChhHhcCcccccEEEecc-CcccccCCcccc
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP-LGGILPPVIGNFSASFQNFYAFN-CKLKGNIPQEIG 122 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~ 122 (524)
+|++|++++|+++.++. ..+.++++|++|++++|. ++...+..|..+. +|+.|++++ |.++...+..|.
T Consensus 32 ~l~~L~l~~n~l~~i~~--------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS--------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TCCEEEEESCCCSEECT--------TTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEE
T ss_pred cccEEEEeCCcceEECH--------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhC
Confidence 66777777776666543 456666677777777775 6655555666665 677777776 666666666677
Q ss_pred CCCCCCeEEcccCcCcccCCccccCCCCCC---eEecccC-cccccCCccccCCCCCC-EEEccCCcccccCCccccCCC
Q 040301 123 NLRGLTLLSLFNNDLNGTISPTMGRLKQLR---GLSLKYN-NLEGSIPYDLCHLKLMY-GIRLTGNKLSGHIPPCLASLT 197 (524)
Q Consensus 123 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~ 197 (524)
++++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|++....+..+.. +
T Consensus 103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 77777777777777775 443 66777777 7777777 77766566677777777 7777777777433333443 6
Q ss_pred CCCEEEccCCc-CCCccChhccCC-CCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCC
Q 040301 198 SLRELHLGSNK-LTSSIPSSLWSL-EYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRN 255 (524)
Q Consensus 198 ~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 255 (524)
+|+.|++++|+ ++...+..|..+ ++|+.|++++|.+.+ +|.. .+++|+.|+++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 78888888884 775555667777 788888888888874 4433 5677888887765
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.6e-25 Score=219.51 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=53.8
Q ss_pred CCCCCCCCEEEccCCCCCCCCC----hhHhcCcccccEEEeccCcccccCCccccCC-----CCCCeEEcccCcCcccCC
Q 040301 72 LTNCRHLKALSLGSNPLGGILP----PVIGNFSASFQNFYAFNCKLKGNIPQEIGNL-----RGLTLLSLFNNDLNGTIS 142 (524)
Q Consensus 72 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~ 142 (524)
+...++|++|||++|.+++..+ ..+..++.+|++|++++|.+++..+..+..+ ++|++|++++|.+++..+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3334446666666666555444 3344333245555555555554444444443 555555555555554333
Q ss_pred cc----ccCC-CCCCeEecccCcccccCCccc----cC-CCCCCEEEccCCccc
Q 040301 143 PT----MGRL-KQLRGLSLKYNNLEGSIPYDL----CH-LKLMYGIRLTGNKLS 186 (524)
Q Consensus 143 ~~----~~~l-~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~~L~l~~n~l~ 186 (524)
.. +..+ ++|++|++++|.+++..+..+ .. .++|+.|++++|.+.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 32 2222 455555555555543333222 12 134555555555444
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.1e-25 Score=223.37 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=169.9
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCC---CCCChhHhc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG---GILPPVIGN 98 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~ 98 (524)
|+...++...+. .++..+..+++|++|+|++|.++.... ..+ ...+.++++|++|+|++|.+. +.+|..+..
T Consensus 11 L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l--~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 11 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAA--RWL--SENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp CEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHH--HHH--HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred cccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHH--HHH--HHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 333334444443 466677778888888888888765311 001 134667888888888886443 334444422
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcc----cCCccccCCCCCCeEecccCcccccCCcc----cc
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG----TISPTMGRLKQLRGLSLKYNNLEGSIPYD----LC 170 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~ 170 (524)
+ ...+..+++|++|+|++|.++. .++..+..+++|++|+|++|.++...+.. +.
T Consensus 86 l------------------~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 147 (386)
T 2ca6_A 86 L------------------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147 (386)
T ss_dssp H------------------HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred H------------------HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH
Confidence 1 1234556666666666666664 24445566666666666666665332222 22
Q ss_pred CC---------CCCCEEEccCCccc-ccCC---ccccCCCCCCEEEccCCcCCC-----ccChhccCCCCCCEEEcCCCc
Q 040301 171 HL---------KLMYGIRLTGNKLS-GHIP---PCLASLTSLRELHLGSNKLTS-----SIPSSLWSLEYILMINLSSNS 232 (524)
Q Consensus 171 ~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~ 232 (524)
.+ ++|+.|++++|++. ...+ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.
T Consensus 148 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred HHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 23 67777777777765 2233 345567777888887777762 233366777888888888887
Q ss_pred Cc----ccCCcCccCCCCCCEEEcCCCcCccc-----cccc--cccCCCCEEEccCCcccC----CCcccc-cCCCCCCE
Q 040301 233 LN----DSLPSNIQTLKVLRVLDLSRNQLSGD-----ISTI--GALVDLETLSLASNQFQG----PIPESV-GSLISLES 296 (524)
Q Consensus 233 l~----~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~--~~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~ 296 (524)
++ ..+|..+..+++|+.|++++|.+++. +..+ +.+++|+.|+|++|++++ .+|..+ .++++|+.
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 75 45666777788888888888887654 2334 337888888888888886 366666 56789999
Q ss_pred EeCCCCcCCCCCc
Q 040301 297 LDLSGNNLSGKIP 309 (524)
Q Consensus 297 L~l~~N~l~~~~~ 309 (524)
|++++|.+++..+
T Consensus 308 L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 308 LELNGNRFSEEDD 320 (386)
T ss_dssp EECTTSBSCTTSH
T ss_pred EEccCCcCCcchh
Confidence 9999999886663
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=202.40 Aligned_cols=223 Identities=19% Similarity=0.202 Sum_probs=130.9
Q ss_pred CCCEEEccCCCCCCCCCh---hHhcCcccccEEEeccCcccccCCccc--cCCCCCCeEEcccCcCcccCC----ccccC
Q 040301 77 HLKALSLGSNPLGGILPP---VIGNFSASFQNFYAFNCKLKGNIPQEI--GNLRGLTLLSLFNNDLNGTIS----PTMGR 147 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~ 147 (524)
.++.|.+.++.+....-. .+.... +|++|++++|.+.+..|..+ .++++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 467777777776532111 111222 57777777777777777666 677777777777777775433 23345
Q ss_pred CCCCCeEecccCcccccCCccccCCCCCCEEEccCCccccc--C--CccccCCCCCCEEEccCCcCCCccCh----hccC
Q 040301 148 LKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGH--I--PPCLASLTSLRELHLGSNKLTSSIPS----SLWS 219 (524)
Q Consensus 148 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~ 219 (524)
+++|++|++++|.+++..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 67777777777777766666777777777777777765431 1 2223556677777777777652 222 2455
Q ss_pred CCCCCEEEcCCCcCcccCCcCccCC---CCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCE
Q 040301 220 LEYILMINLSSNSLNDSLPSNIQTL---KVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLES 296 (524)
Q Consensus 220 l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 296 (524)
+++|++|+|++|.+.+..|..+..+ ++|++|++++|.++..+..+. ++|+.|+|++|++++. |. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 6677777777777766555555444 456666666665554443332 4555555555555532 22 344455555
Q ss_pred EeCCCCcCC
Q 040301 297 LDLSGNNLS 305 (524)
Q Consensus 297 L~l~~N~l~ 305 (524)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 555555544
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.9e-23 Score=193.35 Aligned_cols=195 Identities=18% Similarity=0.184 Sum_probs=103.4
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCc-ccccCCccccCCCCCCeEEccc-CcCcccCCccccCCCCCCeE
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCK-LKGNIPQEIGNLRGLTLLSLFN-NDLNGTISPTMGRLKQLRGL 154 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 154 (524)
+|++|++++|++++..+..|..+. +|+.|++++|. ++...+..|.++++|++|++++ |+++...+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666666655555555555 66666666664 5544555566666666666665 66655555555566666666
Q ss_pred ecccCcccccCCccccCCCCCC---EEEccCC-cccccCCccccCCCCCC-EEEccCCcCCCccChhccCCCCCCEEEcC
Q 040301 155 SLKYNNLEGSIPYDLCHLKLMY---GIRLTGN-KLSGHIPPCLASLTSLR-ELHLGSNKLTSSIPSSLWSLEYILMINLS 229 (524)
Q Consensus 155 ~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 229 (524)
++++|.+++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ .|++++|.++ .+|..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~------------- 174 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY------------- 174 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT-------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh-------------
Confidence 666666553 343 44555554 5555555 55444444444555555 5555555544 22222
Q ss_pred CCcCcccCCcCccCCCCCCEEEcCCCc-Ccccc-cccccc-CCCCEEEccCCcccCCCcccccCCCCCCEEeCCCC
Q 040301 230 SNSLNDSLPSNIQTLKVLRVLDLSRNQ-LSGDI-STIGAL-VDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 302 (524)
Q Consensus 230 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 302 (524)
.+.. ++|+.|++++|. +++.+ ..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 175 ----------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 ----------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ----------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred ----------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 2222 445555555552 44433 334444 555555555555553 3322 4455666666554
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.3e-23 Score=203.13 Aligned_cols=211 Identities=20% Similarity=0.296 Sum_probs=110.4
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
++..+.+..+++++.. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..+ +..+.
T Consensus 20 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l----------~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~ 85 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI----------EGVQYLNNLIGLELKDNQITDLAP--LKNLT 85 (308)
T ss_dssp HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTTCC
T ss_pred HHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc----------hhhhccCCCCEEEccCCcCCCChh--HccCC
Confidence 3444455555555332 245567777777777776654 335556677777777777664332 44444
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|.+.+. ..+..+++|+.|++++|++++.. .+..+++|++|++++|.+++..+
T Consensus 86 -~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-------------- 146 (308)
T 1h6u_A 86 -KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-------------- 146 (308)
T ss_dssp -SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--------------
T ss_pred -CCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--------------
Confidence 555555555555432 23555555555555555554321 24555555555555555543221
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 147 ------------l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 147 ------------LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ------------GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred ------------ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 44444555555555544432 11 4445555555555555543221 44555555555555555544
Q ss_pred cccccccCCCCEEEccCCccc
Q 040301 261 ISTIGALVDLETLSLASNQFQ 281 (524)
Q Consensus 261 ~~~~~~l~~L~~L~L~~N~l~ 281 (524)
+ .+..+++|+.|++++|+++
T Consensus 211 ~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 211 S-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G-GGTTCTTCCEEEEEEEEEE
T ss_pred c-cccCCCCCCEEEccCCeee
Confidence 4 2455556666666666655
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=7.7e-25 Score=214.98 Aligned_cols=250 Identities=20% Similarity=0.223 Sum_probs=201.9
Q ss_pred CCCCEEEccCCCCCCCCChhHhcC--cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCccc-CCccccCCCCCC
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNF--SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGT-ISPTMGRLKQLR 152 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 152 (524)
..++.||+++|.+. +..+..+ . +++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~-~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQ-GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHT-TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhc-cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34789999998877 4556655 4 899999999999876665 56799999999999998865 677888999999
Q ss_pred eEecccCcccccCCccccCCCCCCEEEccCC-ccccc-CCccccCCCCCCEEEccCC-cCCCc-cChhccCCC-CCCEEE
Q 040301 153 GLSLKYNNLEGSIPYDLCHLKLMYGIRLTGN-KLSGH-IPPCLASLTSLRELHLGSN-KLTSS-IPSSLWSLE-YILMIN 227 (524)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~ 227 (524)
+|++++|.+++..+..+..+++|+.|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999999888888999999999999999 57653 5666888999999999999 88754 567788899 999999
Q ss_pred cCCC--cCc-ccCCcCccCCCCCCEEEcCCCc-Ccc-ccccccccCCCCEEEccCCc-ccCCCcccccCCCCCCEEeCCC
Q 040301 228 LSSN--SLN-DSLPSNIQTLKVLRVLDLSRNQ-LSG-DISTIGALVDLETLSLASNQ-FQGPIPESVGSLISLESLDLSG 301 (524)
Q Consensus 228 L~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 301 (524)
+++| .++ +.++..+..+++|++|++++|. +++ .+..+..+++|+.|++++|. +.......+..+++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9999 454 3466677889999999999999 554 34778899999999999995 3322223578899999999999
Q ss_pred CcCCCCCcccccCC-CCCCeEEccCCcCccccCC
Q 040301 302 NNLSGKIPKSLETL-SHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 302 N~l~~~~~~~~~~l-~~L~~l~l~~n~l~~~~~~ 334 (524)
| ++.. .+..+ .+++.|++++|.+++..+.
T Consensus 282 ~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 282 I-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp S-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred c-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 9 5432 23333 2366777899999987654
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=8.9e-25 Score=218.76 Aligned_cols=239 Identities=17% Similarity=0.216 Sum_probs=183.4
Q ss_pred ChhHhcCcccccEEEeccCccccc----CCccccCCCCCCeEEcccCc---CcccCCccc-------cCCCCCCeEeccc
Q 040301 93 PPVIGNFSASFQNFYAFNCKLKGN----IPQEIGNLRGLTLLSLFNND---LNGTISPTM-------GRLKQLRGLSLKY 158 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~L~~ 158 (524)
+..+..++ +|+.|++++|.++.. ++..+..+++|++|+|++|. +.+..|..+ ..+++|++|+|++
T Consensus 25 ~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33444443 455555555554433 22336678889999988864 444444444 7899999999999
Q ss_pred Ccccc----cCCccccCCCCCCEEEccCCcccccCCccc----cCC---------CCCCEEEccCCcCC-CccC---hhc
Q 040301 159 NNLEG----SIPYDLCHLKLMYGIRLTGNKLSGHIPPCL----ASL---------TSLRELHLGSNKLT-SSIP---SSL 217 (524)
Q Consensus 159 n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~l~~n~l~-~~~~---~~~ 217 (524)
|.++. .++..+..+++|+.|++++|.+....+..+ ..+ ++|++|++++|.+. ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99997 477788999999999999999875443333 333 89999999999997 3344 467
Q ss_pred cCCCCCCEEEcCCCcCcc-----cCCcCccCCCCCCEEEcCCCcCc-----cccccccccCCCCEEEccCCcccCC----
Q 040301 218 WSLEYILMINLSSNSLND-----SLPSNIQTLKVLRVLDLSRNQLS-----GDISTIGALVDLETLSLASNQFQGP---- 283 (524)
Q Consensus 218 ~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~L~L~~N~l~~~---- 283 (524)
..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++ ..+..+..+++|+.|+|++|++.+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 788999999999999873 24447889999999999999995 2346778899999999999999865
Q ss_pred Cccccc--CCCCCCEEeCCCCcCCC----CCcccc-cCCCCCCeEEccCCcCcccc
Q 040301 284 IPESVG--SLISLESLDLSGNNLSG----KIPKSL-ETLSHLKQFNASHNRLEGKI 332 (524)
Q Consensus 284 ~~~~~~--~l~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~l~l~~n~l~~~~ 332 (524)
++..+. .+++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 456663 38999999999999997 477777 66899999999999987643
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.6e-22 Score=189.64 Aligned_cols=179 Identities=21% Similarity=0.202 Sum_probs=107.8
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++.+.+|+++++++ .+|..+. ++|++|+|++|+++.+.. ..+.++++|++|+|++|.+.+..+..|..+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 82 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSD--------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCH--------hHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence 45677888888887 6666554 477888888887776543 567777777777777777776665555555
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 83 ~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 T-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp T-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred C-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 5 566666666666555555555566666666666666554444455555555555555555544444455555555555
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCC
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLT 210 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 210 (524)
+++|++.+..+..+..+++|+.|++++|.+.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555554444444444455555555555443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.9e-23 Score=199.61 Aligned_cols=227 Identities=19% Similarity=0.192 Sum_probs=172.0
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH--hcCcccccEEEeccCcccccCC----
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI--GNFSASFQNFYAFNCKLKGNIP---- 118 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~---- 118 (524)
.++.|.+.++.++.... .....+..+++|++|++++|.+.+..|..+ ..+. +|++|++++|.+.+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLL-----VGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCEEEECSCCCBHHHH-----HHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHH
T ss_pred ceeEEEEeCCcCCHHHH-----HHHHHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHH
Confidence 46777777776653210 000112234668888888888888887776 6676 88888898888886555
Q ss_pred ccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccccc--C--CccccCCCCCCEEEccCCcccccCCc---
Q 040301 119 QEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGS--I--PYDLCHLKLMYGIRLTGNKLSGHIPP--- 191 (524)
Q Consensus 119 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~--- 191 (524)
..+..+++|++|++++|++.+..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence 3456788999999999999888888888999999999999987642 2 2334678899999999998863 222
Q ss_pred -cccCCCCCCEEEccCCcCCCccChhccCC---CCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccccccccc
Q 040301 192 -CLASLTSLRELHLGSNKLTSSIPSSLWSL---EYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGAL 267 (524)
Q Consensus 192 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l 267 (524)
.+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|++. .+|..+. ++|+.|++++|++++.+. +..+
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l 293 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDEL 293 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSC
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhC
Confidence 24678899999999999987767666665 68999999999998 5676664 799999999999987643 6778
Q ss_pred CCCCEEEccCCcccC
Q 040301 268 VDLETLSLASNQFQG 282 (524)
Q Consensus 268 ~~L~~L~L~~N~l~~ 282 (524)
++|+.|+|++|+++.
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 899999999999874
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.4e-22 Score=186.08 Aligned_cols=180 Identities=21% Similarity=0.220 Sum_probs=98.9
Q ss_pred CCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040301 126 GLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLG 205 (524)
Q Consensus 126 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 205 (524)
..+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456677776666 3333332 466666666666665555556666666666666666665555555556666666666
Q ss_pred CCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCc
Q 040301 206 SNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIP 285 (524)
Q Consensus 206 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 285 (524)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.+ +
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~ 148 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-----------------------A 148 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------T
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-----------------------H
Confidence 66655444445555555555555555555444444444555555555555444433 3
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccc
Q 040301 286 ESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 286 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
..+..+++|+.|++++|++++..+..+..+++|+.+++++|++++.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 3444555555555555555544444455555555555555555443
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.6e-22 Score=194.04 Aligned_cols=192 Identities=27% Similarity=0.383 Sum_probs=99.8
Q ss_pred CCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 040301 124 LRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELH 203 (524)
Q Consensus 124 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 203 (524)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. + .+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 44444444444444421 2 34444444444444444442222 44445555555555544422 2 344555555555
Q ss_pred ccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCC
Q 040301 204 LGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGP 283 (524)
Q Consensus 204 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~ 283 (524)
+++|.+.+. + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.+. +..+++|+.|++++|++++.
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence 555555432 2 25555555555555555553222 5555566666666665554433 55556666666666666543
Q ss_pred CcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCcc
Q 040301 284 IPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEG 330 (524)
Q Consensus 284 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 330 (524)
.+ +..+++|+.|++++|++++.. .+..+++|+.+++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 22 556666666666666666433 25666666666666666654
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=4.3e-22 Score=196.32 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=130.7
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC-hhHhcCcc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP-PVIGNFSA 101 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ 101 (524)
++++.++++++ .+|..+ .+++++|+|++|+|+.++. ..|.++++|++|+|++|++.+.+| ..|..+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~--------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~- 79 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQK--------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLP- 79 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECT--------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCH--------HHHcCCCCCCEEECcCCCCCCccChhHhhcch-
Confidence 67899999998 788776 3589999999999998765 678999999999999999865544 4556665
Q ss_pred cccE-EEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEeccc-CcccccCCccccCCC-CCCEE
Q 040301 102 SFQN-FYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY-NNLEGSIPYDLCHLK-LMYGI 178 (524)
Q Consensus 102 ~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L 178 (524)
++.+ +.+..|++....|..|.++++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 4443 55556777766677777777777777777777766555555666666666644 445544444455443 45566
Q ss_pred EccCCcccccCCccccCCCCCCEEEccC-CcCCCccChhccCCCCCCEEEcCCCcCcc
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGS-NKLTSSIPSSLWSLEYILMINLSSNSLND 235 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 235 (524)
++++|+++...+. .....+|+.|++.+ |.++...++.|..+++|+.|++++|+++.
T Consensus 160 ~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 160 WLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccccccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 6666666533332 22344566666643 44443333445556666666666666653
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.7e-24 Score=229.32 Aligned_cols=323 Identities=11% Similarity=0.047 Sum_probs=163.6
Q ss_pred CccEEEccCCc-ccc-cCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCC----CCh
Q 040301 21 IYWVMDLSSNS-FSG-HIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGI----LPP 94 (524)
Q Consensus 21 ~l~~Ldls~n~-l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 94 (524)
+|++|+|++|. ++. .++....++++|++|+|++|.+++... ..++ ....++++|++|++++|.+.+. ++.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~l~--~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 214 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG--KWLH--ELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS--HHHH--HHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch--hHHH--HHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence 47777777665 221 122222356677777777776644210 0011 2234556666666666666522 233
Q ss_pred hHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcC--------------------------cccCCccccCC
Q 040301 95 VIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDL--------------------------NGTISPTMGRL 148 (524)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------------------~~~~~~~~~~l 148 (524)
.+..++ +|+.|++++|.+.+ +|..+.++++|+.|+++++.. ...+|..+..+
T Consensus 215 ~~~~~~-~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 215 IARNCR-SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHHCT-TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HHhhCC-CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 334444 66666666666553 344455555555555543211 11233344455
Q ss_pred CCCCeEecccCcccccCC-ccccCCCCCCEEEccCCccc-ccCCccccCCCCCCEEEccC-----------CcCCCc-cC
Q 040301 149 KQLRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLS-GHIPPCLASLTSLRELHLGS-----------NKLTSS-IP 214 (524)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~ 214 (524)
++|++|++++|.+++... ..+..+++|+.|+++ +.+. +.++..+..+++|+.|++++ |.++.. ++
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 566666666666543322 224555666666665 2222 12222234456666666662 334322 12
Q ss_pred hhccCCCCCCEEEcCCCcCcccCCcCccC-CCCCCEEEcC----CCcCcccc------ccccccCCCCEEEccCCc--cc
Q 040301 215 SSLWSLEYILMINLSSNSLNDSLPSNIQT-LKVLRVLDLS----RNQLSGDI------STIGALVDLETLSLASNQ--FQ 281 (524)
Q Consensus 215 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~------~~~~~l~~L~~L~L~~N~--l~ 281 (524)
..+..+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++.+ ..+..+++|+.|++++|. ++
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 22344666666666666665544444433 6666776664 45555432 224456666666665432 44
Q ss_pred CCCcccc-cCCCCCCEEeCCCCcCCC-CCcccccCCCCCCeEEccCCcCccccCC--CCcCCCCCcccccCCC
Q 040301 282 GPIPESV-GSLISLESLDLSGNNLSG-KIPKSLETLSHLKQFNASHNRLEGKILV--KGSFKNFSAESFFGNY 350 (524)
Q Consensus 282 ~~~~~~~-~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~~~~~~~~~~~n~ 350 (524)
+..+..+ ..+++|+.|++++|.+++ .++..+..+++|+.|++++|++++.... ...+..+..+++.+|.
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3333333 236667777777777664 2334445667777777777766533111 1224455555555554
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=7.5e-24 Score=224.34 Aligned_cols=306 Identities=15% Similarity=0.111 Sum_probs=226.3
Q ss_pred CCccEEEccCCccccc----CCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChh
Q 040301 20 QIYWVMDLSSNSFSGH----IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPV 95 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 95 (524)
++|++|+|++|.+++. ++..+.++++|++|++++|.++.+.. +.++ ..+.++++|++|++++|.+.+ +|..
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~--~~l~--~~~~~~~~L~~L~L~~~~~~~-l~~~ 238 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP--KDLE--TIARNCRSLVSVKVGDFEILE-LVGF 238 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH--HHHH--HHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH--HHHH--HHHhhCCCCcEEeccCccHHH-HHHH
Confidence 7899999999998866 33345678999999999999874321 1222 445678999999999998875 5677
Q ss_pred HhcCcccccEEEeccCcc--------------------------cccCCccccCCCCCCeEEcccCcCcccCC-ccccCC
Q 040301 96 IGNFSASFQNFYAFNCKL--------------------------KGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRL 148 (524)
Q Consensus 96 ~~~~~~~L~~L~l~~n~l--------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l 148 (524)
+..++ +|++|+++.+.. ...+|..+..+++|++|++++|.+++... ..+..+
T Consensus 239 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 239 FKAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp HHHCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred Hhhhh-HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence 77776 888888764211 23456667788999999999999765433 346889
Q ss_pred CCCCeEecccCcccccCCccccCCCCCCEEEccC-----------Cccccc-CCccccCCCCCCEEEccCCcCCCccChh
Q 040301 149 KQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG-----------NKLSGH-IPPCLASLTSLRELHLGSNKLTSSIPSS 216 (524)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 216 (524)
++|++|+++++-..+.++..+..+++|+.|++++ |.+++. ++.....+++|+.|++..|.+++..+..
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 9999999994333333444557789999999993 555533 2223456899999999888888766666
Q ss_pred ccC-CCCCCEEEcC----CCcCccc-----CCcCccCCCCCCEEEcCCCc--Ccccc-ccc-cccCCCCEEEccCCcccC
Q 040301 217 LWS-LEYILMINLS----SNSLNDS-----LPSNIQTLKVLRVLDLSRNQ--LSGDI-STI-GALVDLETLSLASNQFQG 282 (524)
Q Consensus 217 ~~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~-~~~-~~l~~L~~L~L~~N~l~~ 282 (524)
+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+++++. +++.. ..+ ..+++|+.|++++|++++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 655 8999999996 6677653 22336678999999997543 54433 333 347899999999999886
Q ss_pred -CCcccccCCCCCCEEeCCCCcCCCC-CcccccCCCCCCeEEccCCcCccc
Q 040301 283 -PIPESVGSLISLESLDLSGNNLSGK-IPKSLETLSHLKQFNASHNRLEGK 331 (524)
Q Consensus 283 -~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~l~l~~n~l~~~ 331 (524)
.++..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3455568899999999999998754 344556789999999999998754
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=8.3e-21 Score=172.65 Aligned_cols=162 Identities=24% Similarity=0.210 Sum_probs=98.6
Q ss_pred CCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 040301 125 RGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHL 204 (524)
Q Consensus 125 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 204 (524)
++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666666555555666666666666666666444445556666666666666666544445566666666666
Q ss_pred cCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCC
Q 040301 205 GSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPI 284 (524)
Q Consensus 205 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~ 284 (524)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +.+++|+.|++..|++++.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCcee
Confidence 666666554455566666666666666666544445666666666666666543 23455666666666666666
Q ss_pred cccccCCC
Q 040301 285 PESVGSLI 292 (524)
Q Consensus 285 ~~~~~~l~ 292 (524)
|..++.++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 66555443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.5e-20 Score=185.33 Aligned_cols=221 Identities=16% Similarity=0.098 Sum_probs=99.8
Q ss_pred CCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCC-ccccCCCCCCe-EEcccCcCcccCCccccCCCCCCe
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIP-QEIGNLRGLTL-LSLFNNDLNGTISPTMGRLKQLRG 153 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~ 153 (524)
+++++|+|++|+|+.+.+..|..+. +|+.|++++|++.+.+| ..|.++++|++ +.+.+|++..+.|..|..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 3455555555555544444444444 45555555554433222 23444444443 333344444444444444555555
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC-CcCCCccChhccCCC-CCCEEEcCCC
Q 040301 154 LSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS-NKLTSSIPSSLWSLE-YILMINLSSN 231 (524)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~L~~n 231 (524)
|++++|.++ ...+..+....++..+++.+ +.+....+..|..+. .++.|++++|
T Consensus 109 L~l~~n~l~------------------------~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 109 LLISNTGIK------------------------HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEEECCS------------------------SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred ccccccccc------------------------cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 555555444 33333333333444444433 333322223333332 3455555555
Q ss_pred cCcccCCcCccCCCCCCEEEcC-CCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCc
Q 040301 232 SLNDSLPSNIQTLKVLRVLDLS-RNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIP 309 (524)
Q Consensus 232 ~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 309 (524)
++.. ++.......+|+.|+++ +|.++.++ ..+..+++|+.|+|++|+++...+.. +.+|+.|.+.++.-...+|
T Consensus 165 ~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 165 GIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC
T ss_pred cccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC
Confidence 5543 22222233445555554 24444444 33455555556666665555322222 3344444444333222444
Q ss_pred ccccCCCCCCeEEccCC
Q 040301 310 KSLETLSHLKQFNASHN 326 (524)
Q Consensus 310 ~~~~~l~~L~~l~l~~n 326 (524)
.+..+++|+.+++.++
T Consensus 241 -~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 -TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTTCCSCCEEECSCH
T ss_pred -CchhCcChhhCcCCCC
Confidence 2555666666666543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.9e-21 Score=172.79 Aligned_cols=178 Identities=21% Similarity=0.183 Sum_probs=96.7
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.++++++.++ .+|..+ .++|++|++++|+++.++. ..+.++++|++|++++|.+.+..+..|..+. +
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~ 77 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPN--------GVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-S 77 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-T
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCCh--------hhhcccccCcEEECCCCccCccChhhcCCCC-C
Confidence 45666666666 445443 3466777777776665432 4456666666666666666654444445554 5
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccC
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG 182 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 182 (524)
|+.|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 55555555555544444455555555555555555554444455555555555555555544444445555555555555
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCCccChhccC
Q 040301 183 NKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWS 219 (524)
Q Consensus 183 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 219 (524)
|.+.+ .+++|+.|++..|.+++.+|..+..
T Consensus 158 N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 158 NPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 54331 2234444445555555444444433
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.8e-20 Score=192.96 Aligned_cols=184 Identities=25% Similarity=0.294 Sum_probs=106.7
Q ss_pred CCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 77 HLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
+|+.|+|++|.+++ +|..+. . +|+.|++++|.++ .+| ..+++|+.|++++|++++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 78888888888876 444332 3 6777777777776 455 346777777777777775 444 443 7777777
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 157 KYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 7777764 444 45666677777766664 343 35566666666666664 444 33 56666666666665 3
Q ss_pred CCcCccCCCCC-------CEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccc
Q 040301 237 LPSNIQTLKVL-------RVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESV 288 (524)
Q Consensus 237 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 288 (524)
+|. +.. +| +.|++++|.++.++..+..+++|+.|+|++|++++.+|..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 444 332 34 44555555444444434444444444444444444444433
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=1.1e-20 Score=198.20 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=144.1
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.++..++++.+.+++..+ +..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+.+..| +..+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l----------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l 86 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV----------QGIQYLPNVTKLFLNGNKLTDIKP--LTNL 86 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC----------TTGGGCTTCCEEECTTSCCCCCGG--GGGC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC----------hHHccCCCCCEEEeeCCCCCCChh--hccC
Confidence 456667778877775443 56788888999988888765 356778888899998888886554 7777
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|+.|+|++|.+.+ +| .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+
T Consensus 87 ~-~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 87 K-NLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp T-TCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred C-CCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 6 88888888888874 23 577888888888888888753 4577788888888888888754 5677788888888
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCccc
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDS 236 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 236 (524)
|++|.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88888775544 77778888888888877643 3577777888888888777653
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=3.5e-22 Score=211.61 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCccEEEccCCcccccCCcccc-cccCCCEEEcccc-ccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFG-NLRHLSSLLLTWN-NLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
++|+.|+|++|.+++..+..+. .+++|++|+|++| .++... ++ ..+.++++|++|+|++|.+++..+..+.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-----l~--~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG-----LA--AIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH-----HH--HHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH-----HH--HHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 5788888888887766666664 5777888888777 443210 11 2233566777777777776554433333
Q ss_pred ----cCcccccEEEeccCc--ccc-cCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEec
Q 040301 98 ----NFSASFQNFYAFNCK--LKG-NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSL 156 (524)
Q Consensus 98 ----~~~~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 156 (524)
.++ +|+.|++++|. +.. .++..+.++++|++|++++|.....++..+..+++|++|++
T Consensus 178 ~~~~~~~-~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 178 HFPDTYT-SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp GSCTTCC-CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred HHhhcCC-cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 233 66777776665 211 11112234566667766666221123333444444444443
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=7.3e-21 Score=182.25 Aligned_cols=191 Identities=24% Similarity=0.349 Sum_probs=100.8
Q ss_pred CccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 21 IYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 21 ~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
++..+++..+.+++.. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..+ +..+.
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~----------~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~ 90 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV----------QGIQYLPNVTKLFLNGNKLTDIKP--LANLK 90 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC----------hhHhcCCCCCEEEccCCccCCCcc--cccCC
Confidence 3444455555555332 244566677777777766654 234556666666666666664332 44443
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|.+.+ + ..+..+++|++|++++|++.+. ..+..+++|+.|++
T Consensus 91 -~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--------------------------~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 91 -NLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--------------------------NGLVHLPQLESLYL 141 (291)
T ss_dssp -TCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--------------------------GGGGGCTTCCEEEC
T ss_pred -CCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--------------------------hhhcCCCCCCEEEc
Confidence 44555555444442 1 1244444444444444444432 23444455555555
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD 260 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 260 (524)
++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+...
T Consensus 142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred cCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 55555432 345555566666666666554322 5556666666666666654 22 255666666666666666543
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.8e-19 Score=186.88 Aligned_cols=188 Identities=23% Similarity=0.296 Sum_probs=149.4
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+++.|++++|.+++ +|..+ +++|+.|++++|+++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78899999999886 66655 378999999999998 455 457889999999999986 666 655 89999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 261 (524)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++.++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh
Confidence 999886 555 57889999999999885 555 56889999999999886 666 65 88999999999988766
Q ss_pred ccccccCCC-------CEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 040301 262 STIGALVDL-------ETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS 316 (524)
Q Consensus 262 ~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 316 (524)
. +.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 6 443 66 88999999888 5777777788999999999999888887776643
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=6.3e-22 Score=209.62 Aligned_cols=324 Identities=14% Similarity=0.111 Sum_probs=206.4
Q ss_pred CCCccEEEccCC-ccccc-CCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC--CCCC-CC
Q 040301 19 HQIYWVMDLSSN-SFSGH-IPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP--LGGI-LP 93 (524)
Q Consensus 19 ~~~l~~Ldls~n-~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~-~~ 93 (524)
.++|+.|++++| .+++. ++..+.++++|++|+|++|.+++... ..++ .....+++|++|++++|. +... ++
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~--~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG--HWLS--HFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG--GGGG--GSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch--HHHH--HHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 379999999999 66643 44445689999999999999776421 0111 333477899999999997 2211 12
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCc--------------------------Ccc----cCCc
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNND--------------------------LNG----TISP 143 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--------------------------l~~----~~~~ 143 (524)
..+..++ +|+.|++++|.....++..+..+++|+.|+++.+. +.. .++.
T Consensus 205 ~l~~~~~-~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 205 RLVTRCP-NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHCT-TCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHhCC-CCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 2223345 89999999983322366667777788888755442 111 1222
Q ss_pred cccCCCCCCeEecccCcccccCC-ccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEEccC---------CcCCCc
Q 040301 144 TMGRLKQLRGLSLKYNNLEGSIP-YDLCHLKLMYGIRLTGNKLSGH-IPPCLASLTSLRELHLGS---------NKLTSS 212 (524)
Q Consensus 144 ~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~ 212 (524)
.+..+++|++|++++|.+++... ..+..+++|+.|++++| +... ++.....+++|+.|++.+ +.++..
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 23357889999999998764332 33567889999999887 4322 222233578888888833 344432
Q ss_pred cChhc-cCCCCCCEEEcCCCcCcccCCcCcc-CCCCCCEEEcC--C----CcCcccc------ccccccCCCCEEEccCC
Q 040301 213 IPSSL-WSLEYILMINLSSNSLNDSLPSNIQ-TLKVLRVLDLS--R----NQLSGDI------STIGALVDLETLSLASN 278 (524)
Q Consensus 213 ~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~------~~~~~l~~L~~L~L~~N 278 (524)
....+ ..+++|+.|.+..|.+++.....+. .+++|+.|+++ + +.+++.+ ..+..+++|+.|++++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence 22222 3478888888887877654444443 47888888888 3 5555322 2255677888888876
Q ss_pred cccCCCcccccC-CCCCCEEeCCCCcCCCCCcccc-cCCCCCCeEEccCCcCccccC--CCCcCCCCCcccccCC
Q 040301 279 QFQGPIPESVGS-LISLESLDLSGNNLSGKIPKSL-ETLSHLKQFNASHNRLEGKIL--VKGSFKNFSAESFFGN 349 (524)
Q Consensus 279 ~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~l~l~~n~l~~~~~--~~~~~~~~~~~~~~~n 349 (524)
.+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++... ....+..+..+++.++
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 555544444544 7788888888888865544444 567888888888888754322 1223455566665555
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.3e-19 Score=164.30 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=94.0
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.+++++++++ .+|..+. ++|++|++++|+++.++. ..|.++++|++|+|++|.+.+..|..|..+. +
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~--------~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~ 81 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPP--------GAFSPYKKLRRIDLSNNQISELAPDAFQGLR-S 81 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECT--------TSSTTCTTCCEEECCSSCCCEECTTTTTTCS-S
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCH--------hHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-C
Confidence 56788888887 6666554 578888888888776643 5677777788888877777766566666555 5
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccC
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG 182 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 182 (524)
|+.|++++|.++...+..|.++++|+.|+|++|++.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 66666666655544444455555555666555555555555555555555555555555544444455555555555555
Q ss_pred Ccc
Q 040301 183 NKL 185 (524)
Q Consensus 183 n~l 185 (524)
|.+
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 544
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=4.3e-20 Score=176.87 Aligned_cols=168 Identities=30% Similarity=0.359 Sum_probs=138.3
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEcc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLT 181 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 181 (524)
+|+.|++++|.+... + .+..+++|+.|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 455555555555432 2 36677888888888888876544 7888888888888888875 33 48889999999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc
Q 040301 182 GNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 182 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 261 (524)
+|++.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.+
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh
Confidence 9999854 4688999999999999999864 678999999999999999987544 889999999999999998765
Q ss_pred ccccccCCCCEEEccCCcccC
Q 040301 262 STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 262 ~~~~~l~~L~~L~L~~N~l~~ 282 (524)
.+..+++|+.|++++|++..
T Consensus 195 -~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 -ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGTTCTTCSEEEEEEEEEEC
T ss_pred -hhccCCCCCEEECcCCcccC
Confidence 58889999999999999985
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=164.09 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=100.0
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.+++++|+++ .+|..+. ..+++|+|++|+++.+.. ...+.++++|++|+|++|.+++..+..|..+. +
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~ 82 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-G 82 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-T
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCcCCEECHHHhCCCC-C
Confidence 57888888887 5676653 356788888888876531 03467778888888888887766665666665 6
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccC
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTG 182 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 182 (524)
|+.|++++|.+++..+..|.++++|++|+|++|++.+..|..|..+++|+.|+|++|.+++..|..|..+++|+.|++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 66666666666655555566666666666666666655566666666666666666666655555555555555555555
Q ss_pred Cccc
Q 040301 183 NKLS 186 (524)
Q Consensus 183 n~l~ 186 (524)
|.+.
T Consensus 163 N~l~ 166 (220)
T 2v70_A 163 NPFN 166 (220)
T ss_dssp CCEE
T ss_pred cCCc
Confidence 5554
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=7.4e-20 Score=191.87 Aligned_cols=194 Identities=23% Similarity=0.311 Sum_probs=157.0
Q ss_pred ccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCcccc
Q 040301 43 LRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIG 122 (524)
Q Consensus 43 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 122 (524)
+.++..+.+..+.+.++ ..+..+++|+.|++++|.+... + .+..+. +|+.|+|++|.+.+..+ +.
T Consensus 20 l~~l~~l~l~~~~i~~~----------~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~-~L~~L~Ls~N~l~~~~~--l~ 84 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDA----------VTQNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LT 84 (605)
T ss_dssp HHHHHHHHTTCSCTTSE----------ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCT-TCCEEECTTSCCCCCGG--GG
T ss_pred HHHHHHHhccCCCcccc----------cchhcCCCCCEEECcCCCCCCC-h-HHccCC-CCCEEEeeCCCCCCChh--hc
Confidence 45666777777777654 3456778899999999999854 3 477777 99999999999986555 88
Q ss_pred CCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 040301 123 NLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLREL 202 (524)
Q Consensus 123 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 202 (524)
.+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|
T Consensus 85 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 158 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 158 (605)
T ss_dssp GCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred cCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence 999999999999999853 3688899999999999998853 4588889999999999998854 568888999999
Q ss_pred EccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc
Q 040301 203 HLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI 261 (524)
Q Consensus 203 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 261 (524)
+|++|.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.+
T Consensus 159 ~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 159 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 999998886655 88888999999999988763 35788889999999988887654
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=4.4e-19 Score=162.44 Aligned_cols=154 Identities=22% Similarity=0.297 Sum_probs=105.7
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCc
Q 040301 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQ 256 (524)
Q Consensus 177 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 256 (524)
.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|+.|+|++|.+.+..|..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4455555554 3333332 456666666666665444566666666666666666666556667777777777777777
Q ss_pred Ccccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 257 LSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 257 l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
++..+ ..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++.|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 76665 345667777777777777777777778888888888888888887777778888888888888888877553
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=179.52 Aligned_cols=180 Identities=21% Similarity=0.164 Sum_probs=104.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCC-CCCCCCEEEccCCCCCCCCChhHhcCc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALT-NCRHLKALSLGSNPLGGILPPVIGNFS 100 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~ 100 (524)
-+.+++++++++ .+|..+. ..++.|+|++|+++.++. ..+. ++++|++|+|++|.+.+..+..|..+.
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~--------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRA--------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECT--------TSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccCh--------hhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 357888888887 5676553 357888888888877653 4555 777788888888877765555555554
Q ss_pred ccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEc
Q 040301 101 ASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRL 180 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 180 (524)
+|+.|++++|++....+..|.++++|+.|+|++|++....+..|..+++|+.|+|++|.++...+..|..
T Consensus 89 -~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--------- 158 (361)
T 2xot_A 89 -NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD--------- 158 (361)
T ss_dssp -TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----------
T ss_pred -CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC---------
Confidence 5555555555555544445555555555555555555555555555555555555555554322222200
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCC--CCEEEcCCCcCc
Q 040301 181 TGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEY--ILMINLSSNSLN 234 (524)
Q Consensus 181 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 234 (524)
+..+++|+.|++++|.+....+..+..++. ++.|+|++|.+.
T Consensus 159 ------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 159 ------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------------cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 034555566666666555433344555554 355666666654
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=166.24 Aligned_cols=155 Identities=24% Similarity=0.270 Sum_probs=109.3
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCCccC-hhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCC
Q 040301 177 GIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIP-SSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRN 255 (524)
Q Consensus 177 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 255 (524)
.+++++|.++ .+|..+. ..++.|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 2343332 244666666666664433 34566777777777777776655666777777777777777
Q ss_pred cCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccCC
Q 040301 256 QLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKILV 334 (524)
Q Consensus 256 ~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~ 334 (524)
.+++.+ ..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 777666 4567777888888888888877777888888888888888888877788888888888888888888876653
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.4e-19 Score=177.40 Aligned_cols=179 Identities=24% Similarity=0.186 Sum_probs=103.6
Q ss_pred CeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCcccc-CCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 040301 128 TLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC-HLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGS 206 (524)
Q Consensus 128 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 206 (524)
+.++++++++.. +|..+. +.++.|+|++|.+++..+..+. .+++|+.|++++|++.+..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467777777763 343332 3467777777777765555555 666666666666666655555666666666666666
Q ss_pred CcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcc
Q 040301 207 NKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPE 286 (524)
Q Consensus 207 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 286 (524)
|.+....+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+++.+. .
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----------------------~ 154 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-----------------------E 154 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-----------------------G
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-----------------------H
Confidence 66664444555666666666666666655555555555555555555555554432 2
Q ss_pred cc---cCCCCCCEEeCCCCcCCCCCcccccCCCC--CCeEEccCCcCcccc
Q 040301 287 SV---GSLISLESLDLSGNNLSGKIPKSLETLSH--LKQFNASHNRLEGKI 332 (524)
Q Consensus 287 ~~---~~l~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~l~l~~n~l~~~~ 332 (524)
.+ ..+++|+.|+|++|+++...+..+..++. ++.+++++|++.|.+
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 22 34555555555555555444444555544 255666666665543
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=2.6e-19 Score=161.13 Aligned_cols=154 Identities=16% Similarity=0.235 Sum_probs=109.6
Q ss_pred cccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCc
Q 040301 40 FGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQ 119 (524)
Q Consensus 40 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 119 (524)
...+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +..+..++ +|+.|++++|.+++..+.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l----------~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~-~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL----------TGIEYAHNIKDLTINNIHATN--YNPISGLS-NLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC----------TTGGGCTTCSEEEEESCCCSC--CGGGTTCT-TCCEEEEECTTCBGGGSC
T ss_pred hhhcCCccEEeccCCCccCh----------HHHhcCCCCCEEEccCCCCCc--chhhhcCC-CCCEEEeECCccCcccCh
Confidence 45667777777777777654 235566777777777775542 23566665 777777777777766677
Q ss_pred cccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCc-ccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 040301 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNN-LEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTS 198 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 198 (524)
.|+.+++|+.|++++|++++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+.+ ++ .+..+++
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~ 182 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPK 182 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSS
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCC
Confidence 77788888888888888877667777788888888888887 55 444 57778888888888888774 33 5777888
Q ss_pred CCEEEccCCcCC
Q 040301 199 LRELHLGSNKLT 210 (524)
Q Consensus 199 L~~L~l~~n~l~ 210 (524)
|+.|++++|++.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 888888888765
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.7e-18 Score=158.30 Aligned_cols=136 Identities=27% Similarity=0.288 Sum_probs=80.4
Q ss_pred CCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEc
Q 040301 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSL 275 (524)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L 275 (524)
++|+.|++++|.+.+..+..+..+++|+.|+|++|.+....+..|..+++|+.|++++|.+++.+ ..+..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555544555555555555555555555444444555556666666666655554 33455666666666
Q ss_pred cCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 276 ASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 276 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.+++++|++.|.++
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 666666 455666666666666666666665555556666667777777776666543
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=4.7e-18 Score=156.66 Aligned_cols=136 Identities=26% Similarity=0.251 Sum_probs=86.3
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEc
Q 040301 173 KLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDL 252 (524)
Q Consensus 173 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 252 (524)
++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555555444555555555555555555555443444555666666666666666544555566666667777
Q ss_pred CCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCC
Q 040301 253 SRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKI 308 (524)
Q Consensus 253 ~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 308 (524)
++|.++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 77766666666666777777777777777655566777888888888888877543
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=5.2e-19 Score=166.66 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=88.5
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
.++++.+++++|++++. + .+..+++|++|++++|+++.+ ..+..+++|++|++++|.+.+..+ +..
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l----------~~l~~l~~L~~L~L~~N~i~~~~~--l~~ 83 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL----------AGMQFFTNLKELHLSHNQISDLSP--LKD 83 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc----------hHHhhCCCCCEEECCCCccCCChh--hcc
Confidence 34566677777777633 3 466777777777777777654 345566777777777777764433 555
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
++ +|+.|++++|++++. |. +.. ++|+.|++++|++++. ..+..+++|+.|++++|++++. + .+..+++|+.|
T Consensus 84 l~-~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L 155 (263)
T 1xeu_A 84 LT-KLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL 155 (263)
T ss_dssp CS-SCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE
T ss_pred CC-CCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE
Confidence 54 555555555555432 21 111 4555555555555432 2344455555555555555432 1 34444444444
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCC
Q 040301 179 RLTGNKLSGHIPPCLASLTSLRELHLGSNKLT 210 (524)
Q Consensus 179 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 210 (524)
++++|++.+. ..+..+++|+.|++++|.+.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 4444444432 23344444444444444433
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.8e-18 Score=154.37 Aligned_cols=154 Identities=17% Similarity=0.194 Sum_probs=125.1
Q ss_pred CCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCC
Q 040301 73 TNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLR 152 (524)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 152 (524)
+.+++|++|++++|.+. .+| .+..++ +|+.|++++|.+. .+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAH-NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCT-TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCC-CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 56678999999999988 445 577777 8999999999665 344788899999999999999877788888999999
Q ss_pred eEecccCcccccCCccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCC
Q 040301 153 GLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNK-LSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231 (524)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 231 (524)
+|++++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 99999999988778888899999999999998 55 444 58888999999999998875 33 6788899999999999
Q ss_pred cCcc
Q 040301 232 SLND 235 (524)
Q Consensus 232 ~l~~ 235 (524)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8753
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=7.7e-21 Score=198.16 Aligned_cols=217 Identities=22% Similarity=0.191 Sum_probs=128.3
Q ss_pred CCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCC
Q 040301 73 TNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLR 152 (524)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 152 (524)
..+++|+.|+|++|.+. .+|..++.+. +|++|++++|......|.. +..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 55677778888888776 5677777776 7777777665421111100 001112334444555555555
Q ss_pred eEe-cccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCC
Q 040301 153 GLS-LKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231 (524)
Q Consensus 153 ~L~-L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 231 (524)
.|+ ++.|.+. .|..+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|+|++|
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 555 4444332 22233444444442211 135666666666664 444 666666677777766
Q ss_pred cCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCC-cccccCCCCCCEEeCCCCcCCCCCcc
Q 040301 232 SLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPI-PESVGSLISLESLDLSGNNLSGKIPK 310 (524)
Q Consensus 232 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 310 (524)
.+. .+|..++.+++|+.|++++|.+++++ .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|.+++..|.
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 666 46666667777777777777776655 6666777777777777777655 77777777777777777777755432
Q ss_pred ---cccCCCCCCeEEc
Q 040301 311 ---SLETLSHLKQFNA 323 (524)
Q Consensus 311 ---~~~~l~~L~~l~l 323 (524)
.+..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2233677777653
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=6.3e-19 Score=166.07 Aligned_cols=80 Identities=26% Similarity=0.414 Sum_probs=32.8
Q ss_pred CCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCC
Q 040301 221 EYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 300 (524)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 300 (524)
++|+.|++++|.+.+ + ..+..+++|+.|++++|++++.+ .+..+++|+.|++++|++++. ..+..+++|+.|+++
T Consensus 106 ~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 344444444444432 1 12334444444444444443332 333344444444444444432 233444444444444
Q ss_pred CCcCC
Q 040301 301 GNNLS 305 (524)
Q Consensus 301 ~N~l~ 305 (524)
+|+++
T Consensus 181 ~N~~~ 185 (263)
T 1xeu_A 181 GQKCV 185 (263)
T ss_dssp EEEEE
T ss_pred CCccc
Confidence 44443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=9.6e-21 Score=197.43 Aligned_cols=215 Identities=20% Similarity=0.158 Sum_probs=103.3
Q ss_pred ccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCcc
Q 040301 41 GNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQE 120 (524)
Q Consensus 41 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 120 (524)
..+++|+.|+|++|+++.++ ..++++++|+.|++++|......|.. + ..+...+..|..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp---------~~i~~l~~L~~L~l~~n~~l~~l~~l-------l-----~~~~~~~~~~~~ 404 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQ---------SELESCKELQELEPENKWCLLTIILL-------M-----RALDPLLYEKET 404 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHH---------HHHHHHHHHHHHCTTCHHHHHHHHHH-------H-----HHHCTGGGHHHH
T ss_pred ccCccceeccCChhhHHhhH---------HHHHHHHHHHHhccccchhhhhHHHH-------H-----HhcccccCCHHH
Confidence 45678888888888887543 67788888888888666411000100 0 011122334444
Q ss_pred ccCCCCCCeEE-cccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 121 IGNLRGLTLLS-LFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 121 ~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
++++++|+.|+ ++.|.+. .|+.+++++|.++...+ ..|+.|++++|.+++ +|. +..+++|
T Consensus 405 l~~l~~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L 465 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV 465 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC
T ss_pred HHHHHhcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC
Confidence 44555555554 3333221 23333344444332111 124444444444442 233 4444455
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccc--cccccccCCCCEEEccC
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGD--ISTIGALVDLETLSLAS 277 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~L~~ 277 (524)
+.|++++|.++ .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|++++|.+++. +..+..+++|+.|+|++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 55555555444 344444455555555555555543 33 444555555555555555544 34455555555555555
Q ss_pred CcccCCCcc---cccCCCCCCEEe
Q 040301 278 NQFQGPIPE---SVGSLISLESLD 298 (524)
Q Consensus 278 N~l~~~~~~---~~~~l~~L~~L~ 298 (524)
|++++..|. .+..+++|+.|+
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcCCCCccHHHHHHHHCcccCccC
Confidence 555543221 122355555554
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.6e-18 Score=169.30 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=84.5
Q ss_pred CCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCC-EEEccCCcccCCCcccccCCCCCCEE
Q 040301 220 LEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLE-TLSLASNQFQGPIPESVGSLISLESL 297 (524)
Q Consensus 220 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L 297 (524)
+++|+.+++++|.+....+..|..+++|+.+++.+| +..+. ..|.++.+|+ .+++.+ .++...+..|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 788899999988888777778888889999999887 66655 6788888898 898888 6776677888889999999
Q ss_pred eCCCCcCCCCCcccccCCCCCCeEEc
Q 040301 298 DLSGNNLSGKIPKSLETLSHLKQFNA 323 (524)
Q Consensus 298 ~l~~N~l~~~~~~~~~~l~~L~~l~l 323 (524)
++++|.++...+..|..+++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99888888777778888888888764
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=2.2e-17 Score=144.41 Aligned_cols=135 Identities=21% Similarity=0.159 Sum_probs=109.9
Q ss_pred cCCCCccEEEccCCccc-ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChh
Q 040301 17 IPHQIYWVMDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPV 95 (524)
Q Consensus 17 ~~~~~l~~Ldls~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 95 (524)
..+++|+.|++++|+++ +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----------SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----------SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----------hhhccCCCCCEEECcCCcCchHHHHH
Confidence 34578999999999998 78898899999999999999999865 46778899999999999999878887
Q ss_pred HhcCcccccEEEeccCcccccC-CccccCCCCCCeEEcccCcCcccCC---ccccCCCCCCeEecccCccc
Q 040301 96 IGNFSASFQNFYAFNCKLKGNI-PQEIGNLRGLTLLSLFNNDLNGTIS---PTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 96 ~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~ 162 (524)
+..++ +|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 91 ~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCC-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777 8888888888887532 2667788888888888888875554 46777888888888887776
No 121
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.73 E-value=6.5e-18 Score=161.21 Aligned_cols=90 Identities=23% Similarity=0.351 Sum_probs=79.3
Q ss_pred ccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..||
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 56888899999999999999863 467899999987666677889999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.++|++
T Consensus 93 V~Ey~~~G~L~~~l~~ 108 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRA 108 (299)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999964
No 122
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=162.02 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=80.9
Q ss_pred ccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++.+||
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 46777789999999999999863 467899999987666677889999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.++|++
T Consensus 121 V~Ey~~~G~L~~~l~~ 136 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRS 136 (329)
T ss_dssp EEECCTTCBHHHHHHT
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999864
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.5e-17 Score=147.39 Aligned_cols=128 Identities=27% Similarity=0.316 Sum_probs=66.0
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccCh-hccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCC
Q 040301 176 YGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPS-SLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254 (524)
Q Consensus 176 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 254 (524)
+.+++++|.++ .+|..+. .+++.|++++|.+.+..+. .+..+++|+.|+|++|.+.+..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666654 3444332 2556666666665543332 355555555555555555555455555555555555555
Q ss_pred CcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCC
Q 040301 255 NQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSG 306 (524)
Q Consensus 255 n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 306 (524)
|.+++.+ ..+..+++|+.|+|++|++++..|..+..+++|+.|++++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5555444 234444555555555555554444444444455555555554443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=2e-18 Score=185.48 Aligned_cols=197 Identities=17% Similarity=0.221 Sum_probs=108.0
Q ss_pred CCCCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccC-ccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWS-FLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
+...++.|+|++|.+.. .+.. .|+.++|+.|.+.........+. .+..+..++.|+.|+|++|.+. .+|..+
T Consensus 171 s~~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~ 243 (727)
T 4b8c_D 171 STPLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANI 243 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred cCCccceEEeeCCCCCc-chhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhh
Confidence 34678999999999984 4443 35556666666554421111100 1166778888999999999988 566666
Q ss_pred hcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMY 176 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 176 (524)
..+. +|+.|+|++|.++ .+|..|+++++|+.|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|..+++|+
T Consensus 244 ~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 244 FKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp GGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred cCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence 6776 8888888888888 77888888888888888888888 66778888888888888888887 6777788888888
Q ss_pred EEEccCCcccccCCccccCCCC-CCEEEccCCcCCCccChhccCCCCCCEEEcCCC
Q 040301 177 GIRLTGNKLSGHIPPCLASLTS-LRELHLGSNKLTSSIPSSLWSLEYILMINLSSN 231 (524)
Q Consensus 177 ~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 231 (524)
.|+|++|.+.+.+|..+..+.. ...+++++|.+.+.+|.. |..|+++.|
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 8888888888777766644321 123567778777666553 444555555
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=6.2e-18 Score=181.75 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=59.6
Q ss_pred cCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccC
Q 040301 116 NIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLAS 195 (524)
Q Consensus 116 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 195 (524)
..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555555666666666666655 34444445555555555555555 45555555555555555555555 34444555
Q ss_pred CCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcC
Q 040301 196 LTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSN 240 (524)
Q Consensus 196 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 240 (524)
+++|++|+|++|.+. .+|..|..+++|+.|+|++|.+.+.+|..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 555555555555544 33444444455555555555444444433
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.8e-17 Score=160.40 Aligned_cols=263 Identities=11% Similarity=0.046 Sum_probs=188.4
Q ss_pred CCCccEEEccCCcccccCCccccc-ccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHh
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGN-LRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIG 97 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 97 (524)
..+++.|+++++ +.......+.. +++|++|||++|++..... .-+.++.+..+++..|.| .+..|.
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~---------~~~~~~~~~~~~~~~~~I---~~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSG---------KAGTYPNGKFYIYMANFV---PAYAFS 90 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEE---------SSSSSGGGCCEEECTTEE---CTTTTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecC---------cccccccccccccccccc---CHHHhc
Confidence 367999999874 33222234444 7889999999999983221 111122245566666643 345566
Q ss_pred c--------CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcc----cccC
Q 040301 98 N--------FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNL----EGSI 165 (524)
Q Consensus 98 ~--------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i----~~~~ 165 (524)
. +. +|+.+++.+ .+..+.+.+|.++++|+.|++.+|.+..+.+.+|.++.++..+.+..+.. ....
T Consensus 91 ~~~~~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 91 NVVNGVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEETTEEEECT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred ccccccccccC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence 6 66 889999988 78777788899999999999999988878888888888887777665322 1122
Q ss_pred CccccCCCCCC-EEEc-------------------------cCCcccccCCccc-cCCCCCCEEEccCCcCCCccChhcc
Q 040301 166 PYDLCHLKLMY-GIRL-------------------------TGNKLSGHIPPCL-ASLTSLRELHLGSNKLTSSIPSSLW 218 (524)
Q Consensus 166 ~~~~~~l~~L~-~L~l-------------------------~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~ 218 (524)
...|..+..|+ .+.+ .++-.. .....+ ..+++|+.+++++|.++...+..|.
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 33454445544 2322 221100 000111 1378999999999999866677899
Q ss_pred CCCCCCEEEcCCCcCcccCCcCccCCCCCC-EEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCE
Q 040301 219 SLEYILMINLSSNSLNDSLPSNIQTLKVLR-VLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLES 296 (524)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 296 (524)
.+++|+.+++.+| +....+..|.++++|+ .+++.+ .++.+. ..|.++++|+.+++++|+++...+..|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 9999999999998 7767778899999999 999988 676665 78999999999999999999888889999999999
Q ss_pred EeC
Q 040301 297 LDL 299 (524)
Q Consensus 297 L~l 299 (524)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 874
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1e-16 Score=143.41 Aligned_cols=130 Identities=26% Similarity=0.303 Sum_probs=83.6
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.+|+++|+++ .+|..+.. +|++|++++|+++.++. ...+.++++|++|+|++|.+++..|..|..+. +
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISS-------DGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-H 79 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCC-------SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-T
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCC-------ccccccCCCCCEEECCCCCCCCcCHhHcCCcc-c
Confidence 67888888886 66665543 77888888887776542 02366777777777777777766666666655 6
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG 163 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 163 (524)
|+.|++++|++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 6666666666665555556666666666666666665555555556666666666665553
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=5.5e-17 Score=138.87 Aligned_cols=129 Identities=20% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCCCccEEEccCCccc-ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 18 PHQIYWVMDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
.+++++.|++++|+++ +.+|..+..+++|++|++++|.++.+ ..+.++++|++|++++|.+.+.+|..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----------ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----------TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----------hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 3478999999999998 78888889999999999999998875 467788999999999999997777777
Q ss_pred hcCcccccEEEeccCccccc-CCccccCCCCCCeEEcccCcCcccCC---ccccCCCCCCeEecc
Q 040301 97 GNFSASFQNFYAFNCKLKGN-IPQEIGNLRGLTLLSLFNNDLNGTIS---PTMGRLKQLRGLSLK 157 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~ 157 (524)
..++ +|+.|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 85 ~~l~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCT-TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCC-CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7776 788888888887753 34667777777777777777776554 456677777777665
No 129
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.69 E-value=3e-17 Score=157.30 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=76.5
Q ss_pred cccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 435 EFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+++..+.||+|+||+||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+++..+|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 4566789999999999999962 45789999996543 3346789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|||.++|++
T Consensus 107 V~Ey~~~G~L~~~L~~ 122 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVM 122 (308)
T ss_dssp EEECCSSCBHHHHHHT
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999953
No 130
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.69 E-value=5.8e-17 Score=157.02 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=76.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.++|+..+.||+|+||+||+|+. .+|+.||||++.... ....+.|.+|+++|++++|||||++++++.+++.+||||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 36799999999999999999996 578999999997543 345678999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||+||+|.++|++
T Consensus 103 Ey~~gg~L~~~i~~ 116 (350)
T 4b9d_A 103 DYCEGGDLFKRINA 116 (350)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred eCCCCCcHHHHHHH
Confidence 99999999999953
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=2.8e-15 Score=149.43 Aligned_cols=266 Identities=11% Similarity=0.102 Sum_probs=194.5
Q ss_pred cccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccc
Q 040301 42 NLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEI 121 (524)
Q Consensus 42 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 121 (524)
.+..++.+.+.. .++.+.. .+|.+. +|+.+++..+ +..+....|... +|+.+.+.+ .+......+|
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~--------~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPK--------DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp ECSSCSEEECCT-TCCEECT--------TTTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTT
T ss_pred ecCCccEEEECC-ccCEehH--------hhcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHh
Confidence 346677777754 4666554 667764 6888888766 666666677763 788888876 6666677788
Q ss_pred cCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040301 122 GNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRE 201 (524)
Q Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 201 (524)
.++++|+.+++.+|.+..+...+|. +.+|+.+.+..+ ++..-..+|..+++|+.+.+..+ +...-...|.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 8888888988888888877777776 588888888744 66566678888888888888775 55455566666 78888
Q ss_pred EEccCCcCCCccChhccCCCCCCEEEcCCCcCc-----ccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEc
Q 040301 202 LHLGSNKLTSSIPSSLWSLEYILMINLSSNSLN-----DSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSL 275 (524)
Q Consensus 202 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L 275 (524)
+.+. +.++.....+|..+++|+.+++.+|.+. ...+..|..+++|+.+++. +.++.+. ..|.++.+|+.+.|
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 8884 4455455678888888888888877654 3455678888888888887 4466555 67778888888888
Q ss_pred cCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEEccCCcCc
Q 040301 276 ASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLS-HLKQFNASHNRLE 329 (524)
Q Consensus 276 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~l~l~~n~l~ 329 (524)
..| ++......|..+ +|+.+++.+|.+....+..|..++ .+..+++..+.+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 654 665666778888 888888888887766666677664 6777877766544
No 132
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.67 E-value=5.6e-17 Score=156.85 Aligned_cols=90 Identities=23% Similarity=0.229 Sum_probs=81.2
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
..|+..+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|+.++|||||+++++|.+++.+|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 4688889999999999999997 578999999997655444567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
+||+|.+++++
T Consensus 154 ~gg~L~~~l~~ 164 (346)
T 4fih_A 154 EGGALTDIVTH 164 (346)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCcHHHHHHc
Confidence 99999999864
No 133
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.67 E-value=7.4e-17 Score=153.63 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=81.3
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|+. .+++.||||++.+.. ....+.+.+|+++|++++|||||++++++.+++.+||||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5799999999999999999996 578999999997543 234567999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||+||+|.++|++
T Consensus 112 Ey~~gG~L~~~i~~ 125 (311)
T 4aw0_A 112 SYAKNGELLKYIRK 125 (311)
T ss_dssp CCCTTEEHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 99999999999964
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=6.1e-16 Score=138.29 Aligned_cols=127 Identities=24% Similarity=0.339 Sum_probs=81.8
Q ss_pred cEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCccc
Q 040301 23 WVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSAS 102 (524)
Q Consensus 23 ~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 102 (524)
+.+++++|+++ .+|..+. ++|++|++++|+++.++ ..+.++++|++|+|++|.+++..+..|..+. +
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip---------~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVP---------KELSNYKHLTLIDLSNNRISTLSNQSFSNMT-Q 79 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCC---------GGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-T
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhH---------HHhhcccCCCEEECCCCcCCEeCHhHccCCC-C
Confidence 56788888877 6666553 47778888887776543 5667777777777777777766555566555 6
Q ss_pred ccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 103 FQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
|+.|++++|.+++..|..|.++++|+.|+|++|+++...+..|..+++|+.|++++|.+.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666666666666555555666666666666666665544445555555666665555554
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=7.1e-15 Score=146.53 Aligned_cols=264 Identities=11% Similarity=0.077 Sum_probs=205.2
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+++.+.+.+ +++......|.+. +|+.+.+..+ ++.+.. .+|.+ .+|+.+++.+ .+..+.+..|..+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~--------~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD--------MAFFN-STVQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECT--------TTTTT-CCCCEEECCT-TCCEECSSTTTTC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECH--------HhcCC-CCceEEEeCC-CccEehHHHhhCc
Confidence 4566666654 4555566777774 7999998766 777654 67777 4699999985 6776777888888
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEE
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIR 179 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 179 (524)
. +|+.+++.+|.+.......|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ ++..-..+|.. .+|+.+.
T Consensus 180 ~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 180 Y-NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp T-TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred c-cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 7 899999999988877667776 589999999744 77777889999999999999875 55455566777 7899999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCC-----CccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCC
Q 040301 180 LTGNKLSGHIPPCLASLTSLRELHLGSNKLT-----SSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSR 254 (524)
Q Consensus 180 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 254 (524)
+. +.++......|.++++|+.+++.+|.+. ...+..|..+++|+.+.+.+ .+.......|.++.+|+.+++..
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 94 4466566788999999999999887664 34567889999999999984 47666677899999999999965
Q ss_pred CcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCC-CCCEEeCCCCcCC
Q 040301 255 NQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNLS 305 (524)
Q Consensus 255 n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~ 305 (524)
| ++.+. ..|.++ +|+.+.+.+|.+....+..|..++ +++.|++..+.+.
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5 55554 678888 999999999988877777787774 7888988777653
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3e-16 Score=137.19 Aligned_cols=131 Identities=21% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCCeEecccCccc-ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEE
Q 040301 149 KQLRGLSLKYNNLE-GSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMIN 227 (524)
Q Consensus 149 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 227 (524)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------- 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH--------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh--------
Confidence 44555555555554 34444444444555555555444432 33444444444444444444333333333
Q ss_pred cCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCcccCCCc---ccccCCCCCCEEeCCCC
Q 040301 228 LSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDLSGN 302 (524)
Q Consensus 228 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N 302 (524)
+++|++|++++|.+++.+ ..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|
T Consensus 94 ----------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 ----------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ----------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ----------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 444444444444443322 334444444444444444443222 24445555555555555
Q ss_pred cCC
Q 040301 303 NLS 305 (524)
Q Consensus 303 ~l~ 305 (524)
.+.
T Consensus 158 ~~~ 160 (168)
T 2ell_A 158 EDQ 160 (168)
T ss_dssp TSC
T ss_pred Chh
Confidence 544
No 137
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=157.95 Aligned_cols=91 Identities=23% Similarity=0.226 Sum_probs=81.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
...|+..+.||+|+||.||+|+. .+|+.||||++........+.+.+|+.+|+.++|||||+++++|.+++.+||||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 45699999999999999999997 57899999999765544456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
|+||+|.+++++
T Consensus 230 ~~gG~L~~~i~~ 241 (423)
T 4fie_A 230 LEGGALTDIVTH 241 (423)
T ss_dssp CTTEEHHHHHHH
T ss_pred CCCCcHHHHHhc
Confidence 999999999864
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=134.70 Aligned_cols=130 Identities=24% Similarity=0.321 Sum_probs=89.9
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCC
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASN 278 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N 278 (524)
+.+++++|.++ .+|..+ .++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.+ ..+..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34556666555 334332 245666666666665 45566666667777777777766655 45667777777777777
Q ss_pred cccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 279 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 279 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
++++..+..|..+++|+.|++++|.++...+..+..+++|+.+++++|++.|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 7777667778888888888888888886666677888888888888888877554
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2e-15 Score=133.15 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=76.2
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
.+.+++++|+++ .+|..+ .++|++|++++|+++.++. ..+.++++|++|++++|.+++..+..+..+.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPH--------GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT- 76 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCH--------HHhcCcccccEEECCCCcceEeChhHccCCC-
Confidence 466777777777 455444 2577777777777765543 4566677777777777777755544455554
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
+|+.|++++|.+++..+..|.++++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555555555555444444555555555555555555444444455555555555555554
No 140
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=148.82 Aligned_cols=92 Identities=27% Similarity=0.369 Sum_probs=78.1
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
|+...+++...+.||+|+||+||+|++.+ .||||+++... ....++|.+|++++++++|||||+++|+|. ++.++
T Consensus 31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~ 107 (307)
T 3omv_A 31 WEIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLA 107 (307)
T ss_dssp CBCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred cEEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEE
Confidence 34455678888999999999999999743 69999996433 445678999999999999999999999885 45789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
||||||++|+|.++|++
T Consensus 108 iVmEy~~gGsL~~~l~~ 124 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHV 124 (307)
T ss_dssp EEEECCSSCBHHHHHHT
T ss_pred EEEEcCCCCCHHHHHhh
Confidence 99999999999999964
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=8e-16 Score=131.56 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=14.5
Q ss_pred ccccCCCCEEEccCCcccCCCc---ccccCCCCCCEEeC
Q 040301 264 IGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDL 299 (524)
Q Consensus 264 ~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 299 (524)
+..+++|+.|++++|++++..+ ..+..+++|+.|++
T Consensus 109 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 109 LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 3334444444444444443222 23344444444443
No 142
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.62 E-value=7.9e-16 Score=145.73 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=75.0
Q ss_pred cccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcceEEE
Q 040301 437 NECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFKALMW 509 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~lv~ 509 (524)
...+.||+|+||+||+|.. .+++.||+|.+.... ....+.|.+|++++++++|||||+++++|.+ ++.+||||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 5566899999999999997 468899999997543 3456789999999999999999999999865 34589999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.++|++
T Consensus 109 Ey~~gg~L~~~l~~ 122 (290)
T 3fpq_A 109 ELMTSGTLKTYLKR 122 (290)
T ss_dssp ECCCSCBHHHHHHH
T ss_pred eCCCCCCHHHHHHh
Confidence 99999999999964
No 143
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.61 E-value=1e-15 Score=146.17 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=76.2
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--------
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-------- 503 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-------- 503 (524)
.+|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 4689999999999999999996 578999999997544 344578999999999999999999999987544
Q ss_pred ----cceEEEcccCCCCHHHHHHh
Q 040301 504 ----FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ----~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+|+|||||++|+|.+++++
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~ 108 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNG 108 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHT
T ss_pred CCCcEEEEEEecCCCCcHHHHHHh
Confidence 37999999999999999864
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=7.3e-15 Score=129.51 Aligned_cols=131 Identities=24% Similarity=0.268 Sum_probs=77.7
Q ss_pred CEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCcccc-ccccccCCCCEEEccCC
Q 040301 200 RELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDI-STIGALVDLETLSLASN 278 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N 278 (524)
+.++++++.+. .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+++.+ ..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44455555544 223222 245555666666555444444555666666666666665554 33456666666666666
Q ss_pred cccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 279 QFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 279 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
++++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.+.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6665555556667777777777777775555555667777777777777766554
No 145
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.60 E-value=1.4e-15 Score=142.81 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=74.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|+. .+|+.||||.++... ....+.+.+|++++++++|||||++++++.+++.+|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 5799999999999999999996 578999999997543 233567999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||| +|+|.+++++
T Consensus 93 Ey~-~g~L~~~l~~ 105 (275)
T 3hyh_A 93 EYA-GNELFDYIVQ 105 (275)
T ss_dssp ECC-CEEHHHHHHH
T ss_pred eCC-CCCHHHHHHH
Confidence 999 6899999864
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=3.4e-15 Score=131.50 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=82.5
Q ss_pred CCCCccEEEccCCcccccCCccccccc-CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhH
Q 040301 18 PHQIYWVMDLSSNSFSGHIPNTFGNLR-HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVI 96 (524)
Q Consensus 18 ~~~~l~~Ldls~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 96 (524)
...+|+.|++++|+++ .+|. +..+. +|++|++++|.++++ ..+.++++|++|++++|.+++..+..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~----------~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL----------DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE----------CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc----------cccccCCCCCEEECCCCcccccCcchh
Confidence 4567888888888887 4454 44444 788888888887764 456667778888888887776555555
Q ss_pred hcCcccccEEEeccCcccccCCc--cccCCCCCCeEEcccCcCcccCCc----cccCCCCCCeEecccCccc
Q 040301 97 GNFSASFQNFYAFNCKLKGNIPQ--EIGNLRGLTLLSLFNNDLNGTISP----TMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 97 ~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~ 162 (524)
..++ +|+.|++++|.+. .+|. .+..+++|+.|++++|.+.. .|. .+..+++|+.|+++.|.+.
T Consensus 85 ~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6665 6666666666664 2333 55566666666666666653 233 2555566666666555544
No 147
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.59 E-value=1.5e-15 Score=148.05 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=83.0
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCC-CCccceeE
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCH-RNLIKILS 497 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H-~niv~l~~ 497 (524)
..+|+...++|+..+.||+|+||+||+|.+. .++.||||.+.... ....++|.+|+++|++++| ||||+++|
T Consensus 56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g 135 (353)
T 4ase_A 56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 135 (353)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence 3567777889999999999999999999852 23579999997654 3456789999999999966 89999999
Q ss_pred EEEcC-CcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNP-DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~-~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+|.++ +.++||||||++|+|.++|++
T Consensus 136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~ 162 (353)
T 4ase_A 136 ACTKPGGPLMVIVEFCKFGNLSTYLRS 162 (353)
T ss_dssp EECCTTSCCEEEEECCTTEEHHHHHHH
T ss_pred EEEecCCEEEEEEEcCCCCCHHHHHHh
Confidence 99764 578999999999999999974
No 148
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.59 E-value=1.9e-15 Score=145.03 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=72.5
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC----cceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----FKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----~~~lv~ 509 (524)
++|...+.||+|+||+||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||+++|+|.+++ .+||||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 5678889999999999999998 578999999975432 2223345666677899999999999998754 579999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.++|++
T Consensus 81 Ey~~~gsL~~~l~~ 94 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR 94 (303)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred cCCCCCcHHHHHHh
Confidence 99999999999975
No 149
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.58 E-value=1.2e-15 Score=147.10 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=76.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|+. .+|+.||||+++.... ..+|+.+++.++|||||++++++.+++.+|||||
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 345678888999999999999996 5789999999975432 2479999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||+||+|.++|++
T Consensus 131 y~~gg~L~~~l~~ 143 (336)
T 4g3f_A 131 LLEGGSLGQLIKQ 143 (336)
T ss_dssp CCTTCBHHHHHHH
T ss_pred ccCCCcHHHHHHH
Confidence 9999999999964
No 150
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.57 E-value=3.9e-16 Score=148.59 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=73.5
Q ss_pred ccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|+..+.||+|+||+||+|+. .+++.||||.++... ......+.+|+++|++++|||||++++++.+++.+|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 5799999999999999999985 246789999997543 2233468899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||+||+|.++|++
T Consensus 104 vmEy~~gg~L~~~l~~ 119 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSK 119 (304)
T ss_dssp EECCCTTCEEHHHHHH
T ss_pred EEEcCCCCCHHHHHHh
Confidence 9999999999999864
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=4.6e-17 Score=146.53 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=90.5
Q ss_pred CCccEEEccCCcccccCCc------ccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCC
Q 040301 20 QIYWVMDLSSNSFSGHIPN------TFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILP 93 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 93 (524)
.+++.++++.+++++..|. .|.++++|++|++++|+++.+ ..+.++++|++|++++|.+. .+|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l----------~~~~~l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI----------SSLSGMENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC----------CCHHHHTTCCEEEEEEEEEC-SCS
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc----------cccccCCCCCEEECCCCCcc-ccc
Confidence 4666777777777766665 777888888888888887764 34556677888888888777 456
Q ss_pred hhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCC-ccccCCCCCCeEecccCcccccCC
Q 040301 94 PVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTIS-PTMGRLKQLRGLSLKYNNLEGSIP 166 (524)
Q Consensus 94 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~ 166 (524)
..+..++ +|+.|++++|.+++ +| .+..+++|+.|++++|+++...+ ..+..+++|++|++++|.+++..|
T Consensus 87 ~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 87 NLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred chhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 5666555 77777777777764 33 46667777777777777764322 356666677777777776665443
No 152
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=9.6e-15 Score=128.57 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=72.3
Q ss_pred ccCCCCCCeEEcccCcCcccCCccccCC-CCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 121 IGNLRGLTLLSLFNNDLNGTISPTMGRL-KQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 121 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
+.++.+|+.|++++|++... +. +..+ ++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45566677777777776633 33 3333 3666776666666643 455556666666666666654433334556666
Q ss_pred CEEEccCCcCCCccCh--hccCCCCCCEEEcCCCcCcccCCcC----ccCCCCCCEEEcCCCcC
Q 040301 200 RELHLGSNKLTSSIPS--SLWSLEYILMINLSSNSLNDSLPSN----IQTLKVLRVLDLSRNQL 257 (524)
Q Consensus 200 ~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l 257 (524)
++|++++|.+. .+|. .+..+++|+.|++++|.+.. .|.. +..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666654 3333 45555555555555555542 3332 44455555555555444
No 153
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.51 E-value=2.7e-14 Score=148.82 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=82.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|++.+.||+|+||.||+|.. .+|+.||+|.+........+.+.+|+++|+.++|||||++++++.+++.+||||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 36799999999999999999996 57899999999876655677899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
|+||+|.++|.
T Consensus 236 ~~gg~L~~~i~ 246 (573)
T 3uto_A 236 MSGGELFEKVA 246 (573)
T ss_dssp CCCCBHHHHHT
T ss_pred cCCCcHHHHHH
Confidence 99999999985
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.1e-16 Score=144.07 Aligned_cols=131 Identities=25% Similarity=0.339 Sum_probs=63.8
Q ss_pred cccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCCC
Q 040301 192 CLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDLE 271 (524)
Q Consensus 192 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~ 271 (524)
.+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.+ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 34444444444444444442 23 3444444444444444444 23333444445555555555554433 344455555
Q ss_pred EEEccCCcccCCCc-ccccCCCCCCEEeCCCCcCCCCCcc----------cccCCCCCCeEEccCCcC
Q 040301 272 TLSLASNQFQGPIP-ESVGSLISLESLDLSGNNLSGKIPK----------SLETLSHLKQFNASHNRL 328 (524)
Q Consensus 272 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~l~l~~n~l 328 (524)
.|++++|++++..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.++ +|++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 55555555553211 2455566666666666666544333 255566666664 4444
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=3.2e-12 Score=127.73 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=107.1
Q ss_pred CCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCC
Q 040301 117 IPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASL 196 (524)
Q Consensus 117 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 196 (524)
...+|.++.+|+.+.+.++. ..+...+|.++++|+.+.+..+ ++......|..+..|+.+.+..+... ..+.+...
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~ 229 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK 229 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred chhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence 44568888889999887553 4466778888889998888766 55455567777888877777655432 22223334
Q ss_pred CCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccC---------------------CCCCCEEEcCCC
Q 040301 197 TSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQT---------------------LKVLRVLDLSRN 255 (524)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------l~~L~~L~l~~n 255 (524)
.+|+.+.+..+. .......+..+..++.+.+..+... .....|.. +.+|+.+.+..+
T Consensus 230 ~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 230 TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT
T ss_pred CCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc
Confidence 556666554332 2223344555556666665544322 23333444 444444444332
Q ss_pred cCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 256 QLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 256 ~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
+..+. ..|.++.+|+.+.|..+ ++.....+|.++.+|+.+++..+ ++.....+|..+.+|+.+++.
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 22222 33444555555555432 33333444555555555555444 333334445555555555543
No 156
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.46 E-value=6.4e-14 Score=139.06 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=76.6
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------Cc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------DF 504 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~~ 504 (524)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|+.++|||||++++++... +.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 5799999999999999999996 579999999996533 34567789999999999999999999998643 56
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
+|||||||+ |+|.+++++
T Consensus 134 ~~ivmE~~~-g~L~~~i~~ 151 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHS 151 (398)
T ss_dssp EEEEEECCS-EEHHHHHTS
T ss_pred EEEEEeCCC-CCHHHHHHh
Confidence 899999996 689998854
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.5e-13 Score=117.63 Aligned_cols=105 Identities=25% Similarity=0.251 Sum_probs=61.4
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
.+.||+++|+++ .+|..+. ++|++|+|++|+++.+.. ..|.++++|++|+|++|.+++.
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~--------~~~~~l~~L~~L~Ls~N~l~~l---------- 69 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEP--------GVFDRLTQLTRLDLDNNQLTVL---------- 69 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT--------TTTTTCTTCSEEECCSSCCCCC----------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccCh--------hhhcCcccCCEEECCCCCcCcc----------
Confidence 456666666665 4554442 456666666666655432 4455555555665555555543
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
.+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 70 ---------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 70 ---------------PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------------ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 3444555666666666666666555555666666666666666665
No 158
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.45 E-value=1.1e-13 Score=135.85 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=80.3
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcC
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNP 502 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~ 502 (524)
.+....+.|++.+.||+|+||+||+|+. .+++.||+|.+.... ...++.+|+++|+.+ +|||||++++++.++
T Consensus 15 ~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~ 92 (361)
T 4f9c_A 15 AVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKN 92 (361)
T ss_dssp HSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred hcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence 3344567899999999999999999984 246789999986543 235678999999988 699999999999999
Q ss_pred CcceEEEcccCCCCHHHHHHh
Q 040301 503 DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.+|+|||||++|+|.+++++
T Consensus 93 ~~~~lvmE~~~g~~L~~~~~~ 113 (361)
T 4f9c_A 93 DHVVIAMPYLEHESFLDILNS 113 (361)
T ss_dssp TEEEEEEECCCCCCHHHHHTT
T ss_pred CEEEEEEeCCCcccHHHHHcC
Confidence 999999999999999999865
No 159
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.44 E-value=6e-14 Score=136.21 Aligned_cols=101 Identities=27% Similarity=0.447 Sum_probs=89.5
Q ss_pred cccchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
..+++.++..++++|+..+.||+|+||.||+|...+++.||||++........+.+.+|+++++.++||||+++++++.+
T Consensus 27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 106 (321)
T 2qkw_B 27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE 106 (321)
T ss_dssp ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred eeecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence 35566777888999999999999999999999987889999999876655567789999999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHH
Q 040301 502 PDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++..++||||+++|+|.++++
T Consensus 107 ~~~~~lv~e~~~~~~L~~~l~ 127 (321)
T 2qkw_B 107 RNEMILIYKYMENGNLKRHLY 127 (321)
T ss_dssp TTCCEEEEECCTTCBTGGGSS
T ss_pred CCeEEEEEEcCCCCcHHHHHh
Confidence 999999999999999998774
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=6.8e-13 Score=115.80 Aligned_cols=88 Identities=23% Similarity=0.226 Sum_probs=45.9
Q ss_pred CCCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEc
Q 040301 245 KVLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNA 323 (524)
Q Consensus 245 ~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l 323 (524)
++|+.|++++|.+++.+ ..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444442 33444455555555555555444444455555555555555555444445555556666666
Q ss_pred cCCcCcccc
Q 040301 324 SHNRLEGKI 332 (524)
Q Consensus 324 ~~n~l~~~~ 332 (524)
++|++++.+
T Consensus 110 ~~N~~~c~c 118 (170)
T 3g39_A 110 LNNPWDCAC 118 (170)
T ss_dssp CSSCBCTTB
T ss_pred CCCCCCCCc
Confidence 666655544
No 161
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.43 E-value=2.5e-13 Score=141.16 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=76.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHH---HHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSF---DSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~---~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.++|+..+.||+|+||.||+|+. .+|+.||||++++.. ......+ .+++.+++.++|||||+++++|.+++.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 46899999999999999999996 578999999997543 1122233 3446677888999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|+|||||+||+|.++|++
T Consensus 268 ylVmEy~~GGdL~~~l~~ 285 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQ 285 (689)
T ss_dssp EEEECCCCSCBHHHHHHH
T ss_pred EEEEecCCCCcHHHHHHh
Confidence 999999999999999864
No 162
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.43 E-value=1.3e-13 Score=134.24 Aligned_cols=104 Identities=33% Similarity=0.518 Sum_probs=91.3
Q ss_pred cccccchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEE
Q 040301 420 TWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 420 ~~~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
....+++.++..+.++|+..+.||+|+||.||+|...+++.||||++..... .....+.+|+++++.++||||++++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence 3467889999999999999999999999999999987889999999975432 223468899999999999999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.+++..++||||+++|+|.+++++
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~ 120 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRE 120 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHC
T ss_pred EecCCceEEEEEeccCCCHHHHHHh
Confidence 9999999999999999999999864
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=8.2e-13 Score=115.71 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=64.9
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
-+.+++++|+++ .+|..+. ++|++|+|++|+++.+.. ..|.++++|++|+|++|.+++..+.
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~i~~~------- 75 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEP--------GVFDHLVNLQQLYFNSNKLTAIPTG------- 75 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSSCCCCCCTT-------
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCH--------HHhcCCcCCCEEECCCCCCCccChh-------
Confidence 366777777776 5666553 567777777777766532 5566667777777777766644333
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
.|.++++|+.|+|++|++.+..+..|..+++|+.|+|++|.+.
T Consensus 76 ------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 76 ------------------VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ------------------HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 3445556666666666665544445566666666666666655
No 164
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.41 E-value=1.5e-13 Score=138.63 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=86.3
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEE
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSC 499 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 499 (524)
..++++....++|+..+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|+.++..++||||++++++|
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 143 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF 143 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 345677778899999999999999999999974 578899999975331 1233488999999999999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++..|+|||||++|+|.+++++
T Consensus 144 ~~~~~~~lV~Ey~~gg~L~~~l~~ 167 (437)
T 4aw2_A 144 QDDNNLYLVMDYYVGGDLLTLLSK 167 (437)
T ss_dssp ECSSEEEEEECCCTTCBHHHHHHT
T ss_pred eeCCEEEEEEecCCCCcHHHHHHH
Confidence 999999999999999999999965
No 165
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.41 E-value=6.6e-13 Score=128.14 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=83.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|...+.||+|+||.||+|.. .+++.||+|.+........+.|.+|++++++++||||+++++++.+++..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 46788899999999999999997 46889999999766666778899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 89 ~~~~~L~~~l~~ 100 (310)
T 3s95_A 89 IKGGTLRGIIKS 100 (310)
T ss_dssp CTTCBHHHHHHH
T ss_pred cCCCcHHHHHHh
Confidence 999999999875
No 166
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.2e-12 Score=114.57 Aligned_cols=105 Identities=22% Similarity=0.197 Sum_probs=88.4
Q ss_pred CEEEccCCCCCCCCChhHhcCcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEeccc
Q 040301 79 KALSLGSNPLGGILPPVIGNFSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKY 158 (524)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 158 (524)
+.+++++|.+. .+|..+. .+|+.|++++|++.+..|..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 67777777776 3444332 2788888888888877788899999999999999999988777889999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccc
Q 040301 159 NNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 159 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
|++++..+..|..+++|+.|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99997666679999999999999999873
No 167
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.40 E-value=4.6e-13 Score=129.88 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=87.1
Q ss_pred cccchhhhhhhhcc----------ccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCC
Q 040301 422 RRTSYLDIQRATDE----------FNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHR 490 (524)
Q Consensus 422 ~~~~~~~l~~~~~~----------~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~ 490 (524)
..++++++..+++. |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45677777766653 666779999999999999974 7899999999765555567889999999999999
Q ss_pred CccceeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 491 NLIKILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 491 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
||+++++++...+..++||||+++|+|.+++++
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 135 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ 135 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHh
Confidence 999999999999999999999999999998864
No 168
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.39 E-value=6.3e-13 Score=127.47 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=82.5
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|.. .+++.||||.+........+.+.+|+.+++.++||||+++++++..++..++|||
T Consensus 18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 97 (297)
T 3fxz_A 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME 97 (297)
T ss_dssp GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence 346799999999999999999995 5789999999976554456778999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 98 ~~~~~~L~~~~~~ 110 (297)
T 3fxz_A 98 YLAGGSLTDVVTE 110 (297)
T ss_dssp CCTTCBHHHHHHH
T ss_pred CCCCCCHHHHHhh
Confidence 9999999999864
No 169
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.39 E-value=7.8e-13 Score=128.53 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=82.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+++..|+
T Consensus 12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l 91 (328)
T 3fe3_A 12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL 91 (328)
T ss_dssp CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence 3456799999999999999999997 678999999997543 3456778999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 92 v~e~~~~~~L~~~l~~ 107 (328)
T 3fe3_A 92 IMEYASGGEVFDYLVA 107 (328)
T ss_dssp EECCCTTCBHHHHHHH
T ss_pred EEECCCCCcHHHHHHH
Confidence 9999999999999853
No 170
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.37 E-value=6.6e-13 Score=129.89 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=80.9
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
....+.|+..+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 6 ~~l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~l 85 (347)
T 3zgw_A 6 DELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFM 85 (347)
T ss_dssp TTTTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHHhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEE
Confidence 34557899999999999999999996 578999999997544 2334578899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
|||||++|+|.+++.
T Consensus 86 v~E~~~gg~L~~~l~ 100 (347)
T 3zgw_A 86 VLEYCPGGELFDYII 100 (347)
T ss_dssp EEECCTTCBHHHHHH
T ss_pred EEeCCCCCCHHHHHH
Confidence 999999999999885
No 171
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.37 E-value=8.8e-13 Score=127.15 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=83.5
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
.+..++....++|+..+.||+|+||.||+|.. +++.||||.+.... ....+++.+|++++++++||||+++++++..
T Consensus 27 ~~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~ 105 (309)
T 3p86_A 27 MDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ 105 (309)
T ss_dssp -----CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CCcccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE
Confidence 34455556677899999999999999999987 57889999996543 3456789999999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+..++||||+++|+|.+++++
T Consensus 106 ~~~~~lv~e~~~~~~L~~~l~~ 127 (309)
T 3p86_A 106 PPNLSIVTEYLSRGSLYRLLHK 127 (309)
T ss_dssp TTCCEEEEECCTTCBHHHHHHS
T ss_pred CCceEEEEecCCCCcHHHHHhh
Confidence 9999999999999999999864
No 172
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.36 E-value=4.7e-13 Score=132.89 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=84.5
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
..+....++|...+.||+|+||.||+|... +++.||||.+.... ....++|.+|++++++++||||+++++++..++.
T Consensus 107 ~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~ 186 (377)
T 3cbl_A 107 DKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP 186 (377)
T ss_dssp CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred cccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC
Confidence 344556678999999999999999999974 78899999997543 3345678999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|||||++|+|.+++++
T Consensus 187 ~~lv~e~~~~g~L~~~l~~ 205 (377)
T 3cbl_A 187 IYIVMELVQGGDFLTFLRT 205 (377)
T ss_dssp CEEEEECCTTCBHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHh
Confidence 9999999999999999863
No 173
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.36 E-value=1e-12 Score=124.03 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=81.6
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
...++|+..+.||+|+||.||+|...+++.||+|++..... ..+++.+|++++++++||||+++++++.+++..++|||
T Consensus 7 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (269)
T 4hcu_A 7 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE 85 (269)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred eChhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEE
Confidence 34467899999999999999999987888899999975432 34678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 86 ~~~~~~L~~~l~~ 98 (269)
T 4hcu_A 86 FMEHGCLSDYLRT 98 (269)
T ss_dssp CCTTCBHHHHHHT
T ss_pred eCCCCcHHHHHHh
Confidence 9999999999864
No 174
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.36 E-value=1.6e-12 Score=126.62 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=77.9
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------- 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------- 503 (524)
.++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||++++++|.+.+
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 357899999999999999999974 78999999997543 345678999999999999999999999986643
Q ss_pred --------------------------------------------------cceEEEcccCCCCHHHHHHh
Q 040301 504 --------------------------------------------------FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 --------------------------------------------------~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++|||||++|+|.+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 154 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNR 154 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHT
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhc
Confidence 27999999999999999864
No 175
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.36 E-value=1.1e-12 Score=130.00 Aligned_cols=91 Identities=22% Similarity=0.340 Sum_probs=79.9
Q ss_pred hccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..+|+..+.||+|+||.||+|+.. ++..||||.++... ....++|.+|+.++++++||||+++++++.+++..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 457999999999999999999863 46779999997543 4456789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 124 v~e~~~~~sL~~~l~~ 139 (373)
T 2qol_A 124 VTEYMENGSLDSFLRK 139 (373)
T ss_dssp EEECCTTCBHHHHHHT
T ss_pred EEeCCCCCcHHHHHHh
Confidence 9999999999999864
No 176
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.36 E-value=1.2e-12 Score=124.77 Aligned_cols=90 Identities=9% Similarity=-0.009 Sum_probs=80.5
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
+.|+..+.||+|+||.||+|... +++.||||.+.... ....+.|.+|+..+++++||||+++++++..++..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 56999999999999999999974 58899999997543 334578999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+++|+|.+++++
T Consensus 111 e~~~g~~L~~~l~~ 124 (286)
T 3uqc_A 111 EWIRGGSLQEVADT 124 (286)
T ss_dssp ECCCEEEHHHHHTT
T ss_pred EecCCCCHHHHHhc
Confidence 99999999999864
No 177
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.36 E-value=4.9e-13 Score=133.71 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=84.6
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
+.++....++|+..+.||+|+||.||+|+. .+++.||+|++..... ...+.+.+|+.+++.++|||||+++++|.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 455666788999999999999999999997 4688999999975321 123457899999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..|+|||||++|+|.+++++
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~ 162 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSN 162 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHc
Confidence 9999999999999999999864
No 178
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.35 E-value=7.7e-13 Score=132.38 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=86.6
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEE
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSC 499 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 499 (524)
+.+++.....++|+..+.||+|+||.||+|+. .+++.||||++.+.. ....+.+.+|+.++..++||||+++++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 34566667788999999999999999999997 478999999997533 12234588999999999999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++..|+|||||++|+|.+++++
T Consensus 131 ~~~~~~~lVmE~~~gg~L~~~l~~ 154 (412)
T 2vd5_A 131 QDENYLYLVMEYYVGGDLLTLLSK 154 (412)
T ss_dssp ECSSEEEEEECCCCSCBHHHHHHH
T ss_pred eeCCEEEEEEcCCCCCcHHHHHHh
Confidence 999999999999999999999864
No 179
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.35 E-value=1.5e-12 Score=128.78 Aligned_cols=92 Identities=22% Similarity=0.345 Sum_probs=80.3
Q ss_pred hhccccccCcccCCCCceEEEEEe--------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI--------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSN 501 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~ 501 (524)
..++|+..+.||+|+||.||+|+. .++..||||.++... ....+.+.+|+++++++ +||||++++++|.+
T Consensus 79 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 158 (370)
T 2psq_A 79 PRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 158 (370)
T ss_dssp CGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred cHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence 456789999999999999999985 234579999997543 44567899999999999 89999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..|+||||+++|+|.+++++
T Consensus 159 ~~~~~lv~e~~~~g~L~~~l~~ 180 (370)
T 2psq_A 159 DGPLYVIVEYASKGNLREYLRA 180 (370)
T ss_dssp SSSCEEEEECCTTCBHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHh
Confidence 9999999999999999999864
No 180
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.35 E-value=1.3e-12 Score=124.16 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=82.3
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...+....++|+..+.||+|+||.||+|...++..||+|.+..... ..+++.+|++++++++||||+++++++.+++..
T Consensus 16 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 94 (283)
T 3gen_A 16 YGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPI 94 (283)
T ss_dssp CCTTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred CCCccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCe
Confidence 3455566778999999999999999999988888899999976432 346789999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 95 ~lv~e~~~~~~L~~~l~~ 112 (283)
T 3gen_A 95 FIITEYMANGCLLNYLRE 112 (283)
T ss_dssp EEEECCCTTCBHHHHHHC
T ss_pred EEEEeccCCCcHHHHHHH
Confidence 999999999999999864
No 181
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.35 E-value=4.6e-11 Score=119.23 Aligned_cols=271 Identities=13% Similarity=0.035 Sum_probs=177.2
Q ss_pred cccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcccccEEEecc
Q 040301 31 SFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSASFQNFYAFN 110 (524)
Q Consensus 31 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 110 (524)
+++......|.++.+|+++.+.. .++.+.. .+|.++++|+.++|.++ +..+....|.... +|+.+.+..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~--------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~-~L~~i~~p~ 126 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGE--------FAFENCSKLEIINIPDS-VKMIGRCTFSGCY-ALKSILLPL 126 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECT--------TTTTTCTTCCEECCCTT-CCEECTTTTTTCT-TCCCCCCCT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcch--------hHhhCCCCCcEEEeCCC-ceEccchhhcccc-cchhhcccC
Confidence 45656677899999999999974 4777765 78999999999999755 6656667777776 788877665
Q ss_pred CcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCC
Q 040301 111 CKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIP 190 (524)
Q Consensus 111 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 190 (524)
+ +......+|.+...++...... ...+...+|.++++|+.+.+..+- .......|..+.+|+.+.+..+ +.....
T Consensus 127 ~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~ 201 (394)
T 4fs7_A 127 M-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRD 201 (394)
T ss_dssp T-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECT
T ss_pred c-eeeecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCc
Confidence 4 4445566677765444333332 333456789999999999998664 3356678999999999999876 554566
Q ss_pred ccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcCCCcCccccccccccCCC
Q 040301 191 PCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLSRNQLSGDISTIGALVDL 270 (524)
Q Consensus 191 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L 270 (524)
..|.++..|+.+.+..+.. .+.+.+.....|+.+.+..+ +.......+..+..|+.+.+..+...-....+..+..+
T Consensus 202 ~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGL 278 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTC
T ss_pred hhhccccccceeecCCCce--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeecccccccccc
Confidence 7788899999988877644 23455566678999988754 33344567788899999998876543222344444455
Q ss_pred CEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 271 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 271 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
+.+....+.+. ...|..+.+|+.+.+..+ ++.....+|..+.+|+.+++.
T Consensus 279 ~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 279 KKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp CEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 54444433221 123344444444444332 222233344444444444443
No 182
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.35 E-value=2.7e-12 Score=123.55 Aligned_cols=101 Identities=31% Similarity=0.473 Sum_probs=89.7
Q ss_pred ccccchhhhhhhhcccccc------CcccCCCCceEEEEEeCCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcCCCC
Q 040301 421 WRRTSYLDIQRATDEFNEC------NLLGTGSFGSVYKGTISDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCHR 490 (524)
Q Consensus 421 ~~~~~~~~l~~~~~~~~~~------~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l~H~ 490 (524)
...+++.++..++.+|... +.||+|+||.||+|.. +++.||||.+.... ....+.+.+|+.+++.++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4578899999999998877 8899999999999997 67899999996432 33467899999999999999
Q ss_pred CccceeEEEEcCCcceEEEcccCCCCHHHHHH
Q 040301 491 NLIKILSSCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 491 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
||+++++++.+++..++||||+++|+|.++++
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 122 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHH
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHH
Confidence 99999999999999999999999999999986
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=1.2e-10 Score=116.10 Aligned_cols=287 Identities=9% Similarity=0.092 Sum_probs=155.1
Q ss_pred ccEEEccCCcccccCCcccccccCCCEEEccccc---cCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhc
Q 040301 22 YWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNN---LTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGN 98 (524)
Q Consensus 22 l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 98 (524)
|+.+.+.. .++......|.++.+|+.+.+..|. ++.+.. .+|.++.+|+.+.+..+ +..+....|..
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~--------~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR--------QAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT--------TTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEech--------hhchhcccceeeccCCc-cceehhhhhhh
Confidence 55555543 2444444555555555555555442 333332 44555555555544332 33233334444
Q ss_pred CcccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 040301 99 FSASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGI 178 (524)
Q Consensus 99 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 178 (524)
.. +|+.+.+..+ +.......|.+...|+.+.+..+ +..+...+|.. .+|+.+.+..+-.. .-...|..+.++...
T Consensus 136 c~-~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 136 CE-ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp CT-TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred hc-ccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccccee
Confidence 43 5555555432 22233344555555555555433 33233334432 34555555433222 333445555555555
Q ss_pred EccCCcccccCCcc-------------ccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCC
Q 040301 179 RLTGNKLSGHIPPC-------------LASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLK 245 (524)
Q Consensus 179 ~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 245 (524)
....+......... +.....+..+.+.. .+......+|..+..|+.+.+..+... .....|.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~ 288 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP 288 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccccc
Confidence 44433221110000 00111222333221 122233456778888888888765443 4556778888
Q ss_pred CCCEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEcc
Q 040301 246 VLRVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNAS 324 (524)
Q Consensus 246 ~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 324 (524)
+|+.+.+. +.+..+. ..|.++.+|+.+.|..+ ++.....+|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++.
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 89998886 4455555 67888889999998765 55555677888899999988654 665666788889999999988
Q ss_pred CCcC
Q 040301 325 HNRL 328 (524)
Q Consensus 325 ~n~l 328 (524)
++..
T Consensus 366 ~~~~ 369 (394)
T 4gt6_A 366 GSRS 369 (394)
T ss_dssp SCHH
T ss_pred Ccee
Confidence 7754
No 184
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.34 E-value=1.8e-12 Score=126.98 Aligned_cols=98 Identities=18% Similarity=0.363 Sum_probs=84.9
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEE
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
+..+....++|+..+.||+|+||.||+|... +++.||||.+.... ....+.|.+|+.++++++||||++++++
T Consensus 39 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~ 118 (343)
T 1luf_A 39 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV 118 (343)
T ss_dssp HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred cceeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 3445556788999999999999999999963 34789999997543 3456789999999999999999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.+++..++||||+++|+|.+++++
T Consensus 119 ~~~~~~~~lv~e~~~~~~L~~~l~~ 143 (343)
T 1luf_A 119 CAVGKPMCLLFEYMAYGDLNEFLRS 143 (343)
T ss_dssp ECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred EccCCceEEEEecCCCCcHHHHHHH
Confidence 9999999999999999999999864
No 185
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.34 E-value=1.4e-12 Score=122.91 Aligned_cols=92 Identities=22% Similarity=0.250 Sum_probs=81.7
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
...++|+..+.||+|+||.||+|...++..||+|.+..... ..+++.+|++++++++||||+++++++.++...++|||
T Consensus 5 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (268)
T 3sxs_A 5 LKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE 83 (268)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred echhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence 34578999999999999999999988888899999975432 34678999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 84 ~~~~~~L~~~l~~ 96 (268)
T 3sxs_A 84 YISNGCLLNYLRS 96 (268)
T ss_dssp CCTTCBHHHHHHH
T ss_pred ccCCCcHHHHHHH
Confidence 9999999999864
No 186
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.34 E-value=1.8e-12 Score=127.37 Aligned_cols=90 Identities=14% Similarity=0.272 Sum_probs=79.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-----HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.+.|+..+.||+|+||.||+|.. .+++.||||.+..... ...+.+.+|+.+++.++||||+++++++.+++..|
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 35799999999999999999996 5689999999965331 13577999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+|||||++|+|.+++.
T Consensus 103 lv~e~~~g~~L~~~l~ 118 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIV 118 (351)
T ss_dssp EEEECCSSCBHHHHHH
T ss_pred EEEeCCCCCCHHHHHH
Confidence 9999999999998875
No 187
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=125.54 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=79.5
Q ss_pred hccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.+.|...+.||+|+||.||+|... .+..||||.+.... ....+.|.+|++++++++||||+++++++.+++..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 456888999999999999999973 34469999997643 4456789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 128 v~e~~~~~~L~~~l~~ 143 (325)
T 3kul_A 128 VTEYMENGSLDTFLRT 143 (325)
T ss_dssp EEECCTTCBHHHHHHT
T ss_pred EeeCCCCCcHHHHHHh
Confidence 9999999999999853
No 188
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.33 E-value=1.8e-12 Score=131.98 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=84.1
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
..+++...++|...+.||+|+||.||+|.+.++..||||.++.... ..++|.+|++++++++|||||++++++. .+..
T Consensus 180 ~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~ 257 (454)
T 1qcf_A 180 KDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM-SVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPI 257 (454)
T ss_dssp TTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSC
T ss_pred ccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc-cHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCcc
Confidence 3555667788999999999999999999998788899999976432 4678999999999999999999999986 6679
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 258 ~lv~e~~~~g~L~~~l~~ 275 (454)
T 1qcf_A 258 YIITEFMAKGSLLDFLKS 275 (454)
T ss_dssp EEEECCCTTCBHHHHHHS
T ss_pred EEEEeecCCCcHHHHHHh
Confidence 999999999999999863
No 189
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.33 E-value=2.1e-12 Score=127.11 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=80.9
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
..+.|+..+.||+|+||.||+|.. .+|+.||+|.+..... ...+.+.+|+.+++.++||||+++++++.+.+.
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 89 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD 89 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence 346799999999999999999997 4689999999975432 135678999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++.+
T Consensus 90 ~~lv~e~~~gg~L~~~l~~ 108 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQ 108 (361)
T ss_dssp EEEEEECCCSCBHHHHHTT
T ss_pred EEEEEEcCCCCcHHHHHHh
Confidence 9999999999999999854
No 190
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.33 E-value=2.5e-12 Score=125.42 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=80.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+. .+++.||+|.++... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 46789999999999999999997 468999999997542 23456788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 84 ~E~~~gg~L~~~l~~ 98 (337)
T 1o6l_A 84 MEYANGGELFFHLSR 98 (337)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EeCCCCCcHHHHHHh
Confidence 999999999998853
No 191
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=4.1e-14 Score=139.64 Aligned_cols=164 Identities=20% Similarity=0.181 Sum_probs=73.5
Q ss_pred CCCCEEEccCCCCCCCCChhHhcC----cccccEEEeccCcccccCCccc-cCCCCCCeEEcccCcCcccCCccc-----
Q 040301 76 RHLKALSLGSNPLGGILPPVIGNF----SASFQNFYAFNCKLKGNIPQEI-GNLRGLTLLSLFNNDLNGTISPTM----- 145 (524)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~----- 145 (524)
+.|++|+|++|.++......+... ..+|++|++++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456677777777664433333332 1155555555555543222222 123455555555555543322222
Q ss_pred cCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCc----cChhccCCC
Q 040301 146 GRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSS----IPSSLWSLE 221 (524)
Q Consensus 146 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~ 221 (524)
...++|++|+|++|.++..-.. .++..+...++|++|+|++|.+... +...+...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 1234555555555555421100 1122223344444444444444321 123344444
Q ss_pred CCCEEEcCCCcCccc----CCcCccCCCCCCEEEcCCCcCcc
Q 040301 222 YILMINLSSNSLNDS----LPSNIQTLKVLRVLDLSRNQLSG 259 (524)
Q Consensus 222 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 259 (524)
+|+.|+|++|.+++. +...+...++|++|++++|.+.+
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 555555555555431 22223344556666666666543
No 192
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.7e-14 Score=139.97 Aligned_cols=163 Identities=19% Similarity=0.137 Sum_probs=99.3
Q ss_pred ccCCCEEEccccccCCCCCCccccCccccCC-CCCCCCEEEccCCCCCCCCChhHhc-CcccccEEEeccCcccccCCcc
Q 040301 43 LRHLSSLLLTWNNLTTESSLADQWSFLSALT-NCRHLKALSLGSNPLGGILPPVIGN-FSASFQNFYAFNCKLKGNIPQE 120 (524)
Q Consensus 43 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~ 120 (524)
++.|++|+|++|.++.... ..+. ..+. ..++|++|+|++|.++......+.. +. +|+.|++++|.++......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~--~~l~--~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC--TVVA--AVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH--HHHH--HHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHH--HHHH--HHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHH
Confidence 4578888888888765321 0000 1222 2367888888888876543333332 33 7888888888886544444
Q ss_pred c-----cCCCCCCeEEcccCcCccc----CCccccCCCCCCeEecccCccccc----CCccccCCCCCCEEEccCCcccc
Q 040301 121 I-----GNLRGLTLLSLFNNDLNGT----ISPTMGRLKQLRGLSLKYNNLEGS----IPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 121 ~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
+ ...++|+.|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|+.|++++|.+++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4 2467899999999988742 333446678888888888888742 23445555566666666666543
Q ss_pred c----CCccccCCCCCCEEEccCCcCC
Q 040301 188 H----IPPCLASLTSLRELHLGSNKLT 210 (524)
Q Consensus 188 ~----~~~~~~~l~~L~~L~l~~n~l~ 210 (524)
. +...+...++|++|++++|.+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 2 2222333455555555555554
No 193
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.32 E-value=2e-12 Score=123.83 Aligned_cols=91 Identities=25% Similarity=0.318 Sum_probs=80.0
Q ss_pred hccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~ 505 (524)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++... ...
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46789999999999999999984 35788999999876666678899999999999999999999998654 458
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 89 ~lv~e~~~~~~L~~~l~~ 106 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQK 106 (295)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHh
Confidence 999999999999999864
No 194
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.32 E-value=2.8e-12 Score=124.08 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=80.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+. .+|+.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 35789999999999999999997 478999999997543 22356788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 85 ~e~~~gg~L~~~l~~ 99 (318)
T 1fot_A 85 MDYIEGGELFSLLRK 99 (318)
T ss_dssp ECCCCSCBHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 999999999999864
No 195
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.32 E-value=2.6e-12 Score=126.70 Aligned_cols=93 Identities=20% Similarity=0.323 Sum_probs=82.0
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..|+
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 3456799999999999999999997 468999999997543 3456778999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++.+
T Consensus 106 v~e~~~gg~L~~~l~~ 121 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVA 121 (362)
T ss_dssp EECCCCSCBHHHHHTT
T ss_pred EEecCCCCCHHHHHHH
Confidence 9999999999998853
No 196
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.32 E-value=1.7e-12 Score=127.19 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=83.9
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-----hHHHHHHHHHHHHHhcCCCCCccceeEEEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-----ERAFRSFDSECEVLRNVCHRNLIKILSSCS 500 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~ 500 (524)
.++....++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++.
T Consensus 19 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~ 98 (345)
T 3hko_A 19 GSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE 98 (345)
T ss_dssp BCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred chhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc
Confidence 44556678899999999999999999996 568899999996542 234578999999999999999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHH
Q 040301 501 NPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
+.+..++|||||++|+|.++++
T Consensus 99 ~~~~~~lv~e~~~gg~L~~~l~ 120 (345)
T 3hko_A 99 DEQYICLVMELCHGGHLLDKLN 120 (345)
T ss_dssp CSSEEEEEEECCCSCBHHHHEE
T ss_pred cCCeEEEEEeCCCCCcHHHHHH
Confidence 9999999999999999999874
No 197
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.32 E-value=3.3e-12 Score=123.78 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=80.0
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|+..+.||+|+||.||+|.. .+++.+|+|.+.... .....+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 46789999999999999999997 467889999997543 3456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
|++|+|.+++++
T Consensus 83 ~~g~~L~~~l~~ 94 (321)
T 1tki_A 83 ISGLDIFERINT 94 (321)
T ss_dssp CCCCBHHHHHTS
T ss_pred CCCCCHHHHHHh
Confidence 999999999853
No 198
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.32 E-value=3.7e-12 Score=121.85 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=80.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.+.|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.|.+|+.++++++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 35699999999999999999996 468899999985432 34567899999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 90 ~e~~~g~~L~~~l~~ 104 (294)
T 4eqm_A 90 MEYIEGPTLSEYIES 104 (294)
T ss_dssp EECCCSCBHHHHHHH
T ss_pred EeCCCCCCHHHHHHh
Confidence 999999999999864
No 199
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.32 E-value=1.3e-12 Score=134.41 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=83.8
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
..++....+|+..+.||+|+||.||+|.+. ++..||||.++.... ..++|.+|+.+|++++|||||+++++|..++..
T Consensus 213 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~ 291 (495)
T 1opk_A 213 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF 291 (495)
T ss_dssp SCCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred cccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcE
Confidence 344555677899999999999999999975 478899999975432 357899999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 292 ~lv~E~~~~g~L~~~l~~ 309 (495)
T 1opk_A 292 YIITEFMTYGNLLDYLRE 309 (495)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEccCCCCHHHHHHh
Confidence 999999999999999974
No 200
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.32 E-value=1.5e-12 Score=128.48 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=86.1
Q ss_pred ccchhhhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccc
Q 040301 423 RTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIK 494 (524)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~ 494 (524)
.+...++....++|+..+.||+|+||.||+|.+ .+++.||||++.... ....+.+.+|+++++++ +||||++
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 445677778889999999999999999999983 345789999997643 34557899999999999 7999999
Q ss_pred eeEEEEcCC-cceEEEcccCCCCHHHHHHh
Q 040301 495 ILSSCSNPD-FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++++.+.+ ..++|||||++|+|.+++++
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~ 120 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRS 120 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHHHT
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHHHh
Confidence 999998755 48999999999999999964
No 201
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.32 E-value=3.1e-12 Score=127.05 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=81.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.+.|+..+.||+|+||.||+|.. .+++.+|+|.+..........+.+|+++++.++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 35799999999999999999997 46889999999876555567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
|++|+|.++++
T Consensus 130 ~~gg~L~~~l~ 140 (387)
T 1kob_A 130 LSGGELFDRIA 140 (387)
T ss_dssp CCCCBHHHHTT
T ss_pred CCCCcHHHHHH
Confidence 99999999875
No 202
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.32 E-value=2.9e-12 Score=126.89 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=72.6
Q ss_pred cccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCCC
Q 040301 437 NECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLNI 515 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~g 515 (524)
...+.||+|+||.||+|.. .+|+.||+|.+........+.+.+|++++++++||||+++++++.+.+..++|||||++|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 3356899999999999996 568999999998766566778999999999999999999999999999999999999999
Q ss_pred CHHHHHH
Q 040301 516 SITIIRR 522 (524)
Q Consensus 516 sL~~~l~ 522 (524)
+|.+++.
T Consensus 172 ~L~~~l~ 178 (373)
T 2x4f_A 172 ELFDRII 178 (373)
T ss_dssp EEHHHHH
T ss_pred cHHHHHH
Confidence 9999885
No 203
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.31 E-value=2.3e-12 Score=124.94 Aligned_cols=101 Identities=23% Similarity=0.258 Sum_probs=87.5
Q ss_pred ccchhhhhhhhccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccce
Q 040301 423 RTSYLDIQRATDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKI 495 (524)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l 495 (524)
.+..+++....++|+..+.||+|+||.||+|... +++.||+|.+.... ......+.+|+++++.++||||+++
T Consensus 14 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 93 (322)
T 1p4o_A 14 VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRL 93 (322)
T ss_dssp CCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCE
T ss_pred ccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeee
Confidence 3455677788889999999999999999999853 36779999997543 3455679999999999999999999
Q ss_pred eEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 496 LSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 496 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++++.+++..++||||+++|+|.+++++
T Consensus 94 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 121 (322)
T 1p4o_A 94 LGVVSQGQPTLVIMELMTRGDLKSYLRS 121 (322)
T ss_dssp EEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred EEEEccCCccEEEEEeCCCCcHHHHHHH
Confidence 9999999999999999999999999864
No 204
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.31 E-value=2.7e-12 Score=122.41 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=80.7
Q ss_pred hccccccCcccCCCCceEEEEEeC-CC-------CEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DW-------TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
.++|...+.||+|+||.||+|... ++ ..||+|.+........+.+.+|++++++++||||+++++++.+++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 457888999999999999999863 23 4699999977665667889999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 87 ~~lv~e~~~~~~L~~~l~~ 105 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKK 105 (289)
T ss_dssp CEEEEECCTTCBHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHh
Confidence 9999999999999999864
No 205
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.31 E-value=2e-12 Score=121.93 Aligned_cols=90 Identities=22% Similarity=0.397 Sum_probs=79.5
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+.. ++.+|||.+.... ....+.|.+|+.++++++||||+++++++.+. +..++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 457888999999999999999984 7889999997543 34567899999999999999999999999887 778999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 88 ~e~~~~~~L~~~l~~ 102 (271)
T 3kmu_A 88 THWMPYGSLYNVLHE 102 (271)
T ss_dssp EECCTTCBHHHHHHS
T ss_pred ecccCCCcHHHHHhh
Confidence 999999999999864
No 206
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.31 E-value=3.7e-12 Score=123.78 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=80.2
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.+.|...+.||+|+||.||+|.. .+++.||+|.+..... ...+.+.+|+.++++++||||+++++++.+++..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 35689999999999999999997 4689999999975431 1357799999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 90 ~lv~e~~~~~~L~~~l~~ 107 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAE 107 (326)
T ss_dssp EEEEECCCSCBHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHh
Confidence 999999999999999854
No 207
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.31 E-value=3.2e-12 Score=123.43 Aligned_cols=96 Identities=27% Similarity=0.348 Sum_probs=83.0
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCS 500 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~ 500 (524)
++....++|...+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|++++++++||||+++++++.
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~ 96 (314)
T 2ivs_A 17 KWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS 96 (314)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred ccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe
Confidence 3444567899999999999999999985 234789999997543 445678999999999999999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++..++||||+++|+|.+++++
T Consensus 97 ~~~~~~lv~e~~~~~~L~~~l~~ 119 (314)
T 2ivs_A 97 QDGPLLLIVEYAKYGSLRGFLRE 119 (314)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHH
T ss_pred cCCceEEEEeecCCCCHHHHHHH
Confidence 99999999999999999999864
No 208
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.31 E-value=3.4e-12 Score=126.46 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=80.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+++++.++|||||++++++.+.+..|+|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 46799999999999999999996 468899999997543 23356788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 94 ~e~~~gg~L~~~l~~ 108 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQ 108 (384)
T ss_dssp ECCCTTEEHHHHHHT
T ss_pred EecCCCCcHHHHHHh
Confidence 999999999999864
No 209
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.30 E-value=2.4e-12 Score=122.67 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=86.0
Q ss_pred chhhhhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 425 SYLDIQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 425 ~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.++++....++|+..+.||+|+||.||+|... ++..||+|.+..... ..+.+.+|++++++++||||+++++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 82 (288)
T 3kfa_A 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 82 (288)
T ss_dssp TCCTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST-HHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred chhcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEccCC
Confidence 34566667788999999999999999999974 478899999975432 4577899999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 83 ~~~~v~e~~~~~~L~~~~~~ 102 (288)
T 3kfa_A 83 PFYIITEFMTYGNLLDYLRE 102 (288)
T ss_dssp SEEEEEECCTTEEHHHHHHH
T ss_pred CEEEEEEcCCCCcHHHHHHh
Confidence 99999999999999999864
No 210
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.30 E-value=3.2e-12 Score=120.36 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=81.3
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
..++|+..+.||+|+||.||+|...+++.||+|.+..... ..+++.+|++++++++||||+++++++.+++..++||||
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (267)
T 3t9t_A 6 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF 84 (267)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred chhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence 4467889999999999999999987888999999976442 346789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++|+|.+++++
T Consensus 85 ~~~~~L~~~~~~ 96 (267)
T 3t9t_A 85 MEHGCLSDYLRT 96 (267)
T ss_dssp CTTCBHHHHHHH
T ss_pred CCCCcHHHHHhh
Confidence 999999999864
No 211
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.30 E-value=5e-12 Score=126.09 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=82.5
Q ss_pred hhhccccccCcccCC--CCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 431 RATDEFNECNLLGTG--SFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g--~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++|+..+.||+| +||.||+|+.. +++.||||++.... ....+.+.+|+++++.++|||||++++++.+++..
T Consensus 22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 101 (389)
T 3gni_B 22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL 101 (389)
T ss_dssp CCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred CCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEE
Confidence 345679999999999 99999999974 78999999997543 34567788999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 102 ~lv~e~~~~~~L~~~l~~ 119 (389)
T 3gni_B 102 WVVTSFMAYGSAKDLICT 119 (389)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEccCCCCHHHHHhh
Confidence 999999999999999864
No 212
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.30 E-value=2.5e-12 Score=130.85 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=82.6
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++...++|+..+.||+|+||.||+|.+.++..||||.++.... ..++|.+|+++|++++||||+++++++.+ +..
T Consensus 176 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~ 253 (452)
T 1fmk_A 176 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPI 253 (452)
T ss_dssp TTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred ccccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-Cce
Confidence 3445566778999999999999999999987777899999976432 35679999999999999999999999876 779
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++|||||++|+|.++++
T Consensus 254 ~iv~e~~~~gsL~~~l~ 270 (452)
T 1fmk_A 254 YIVTEYMSKGSLLDFLK 270 (452)
T ss_dssp EEEECCCTTCBHHHHHS
T ss_pred EEEehhhcCCCHHHHHH
Confidence 99999999999999986
No 213
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.30 E-value=3.9e-12 Score=120.54 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=80.9
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.+.|+..+.||+|+||.||+|... ++..+|+|++........+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 457899999999999999999974 5778999999876555567899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+++|+|.+++.
T Consensus 88 ~~~~~L~~~~~ 98 (277)
T 3f3z_A 88 CTGGELFERVV 98 (277)
T ss_dssp CCSCBHHHHHH
T ss_pred cCCCcHHHHHH
Confidence 99999999875
No 214
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.30 E-value=3.6e-12 Score=126.02 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=79.6
Q ss_pred hccccccCcccCCCCceEEEEEeC------CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS------DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.++|+..+.||+|+||.||+|++. +++.||||+++... .....++.+|+.++++++|||||++++++..+...
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 457889999999999999999942 45689999996543 44566799999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 150 ~lv~e~~~~g~L~~~l~~ 167 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRE 167 (367)
T ss_dssp EEEEECCTTEEHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHh
Confidence 999999999999999864
No 215
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.30 E-value=4.4e-12 Score=124.36 Aligned_cols=91 Identities=23% Similarity=0.218 Sum_probs=80.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|+. .+|+.||+|.+.... ....+.+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 35789999999999999999997 468999999997543 23456788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 120 ~e~~~gg~L~~~l~~ 134 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRR 134 (350)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EcCCCCCcHHHHHHH
Confidence 999999999999864
No 216
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.30 E-value=4.2e-12 Score=128.38 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=79.6
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
..++|+..+.||+|+||.||+|.. .+|+.+|+|.+.... ....+.+.+|+++++.++|||||++++++.+++..|+|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 456799999999999999999996 578899999997543 34567789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++.+
T Consensus 89 ~E~~~gg~L~~~i~~ 103 (444)
T 3soa_A 89 FDLVTGGELFEDIVA 103 (444)
T ss_dssp ECCCBCCBHHHHHHH
T ss_pred EEeCCCCCHHHHHHH
Confidence 999999999998853
No 217
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.30 E-value=6.5e-12 Score=122.93 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=79.8
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+.++.++ +||||+++++++.+++..|+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 35789999999999999999997 468899999997543 34456788999999987 89999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 88 v~e~~~gg~L~~~l~~ 103 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQR 103 (345)
T ss_dssp EECCCCSCBHHHHHHH
T ss_pred EEeCCCCCcHHHHHHH
Confidence 9999999999998864
No 218
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.29 E-value=5.1e-12 Score=124.56 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=80.2
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..++|+..+.||+|+||.||++... +++.||||.+..... ..+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 3467999999999999999999974 789999999975432 23568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
||++|+|.+++++
T Consensus 97 ~~~~~~L~~~l~~ 109 (361)
T 3uc3_A 97 YASGGELYERICN 109 (361)
T ss_dssp CCCSCBHHHHHHH
T ss_pred eCCCCCHHHHHHh
Confidence 9999999998853
No 219
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.29 E-value=5.7e-12 Score=122.09 Aligned_cols=91 Identities=23% Similarity=0.290 Sum_probs=79.0
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--cceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD--FKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~~lv 508 (524)
.+.|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 357899999999999999999974 58999999997543 334577889999999999999999999998765 67999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 88 ~e~~~~~~L~~~l~~ 102 (319)
T 4euu_A 88 MEFCPCGSLYTVLEE 102 (319)
T ss_dssp EECCTTCBHHHHHHS
T ss_pred EeCCCCCCHHHHHHH
Confidence 999999999999864
No 220
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.29 E-value=6e-12 Score=119.83 Aligned_cols=90 Identities=23% Similarity=0.202 Sum_probs=80.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.+.|...+.||+|+||.||+|.. .++..+|+|.+.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 35789999999999999999996 468899999997644 2345788999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.+++.
T Consensus 101 ~~~~~~L~~~l~ 112 (285)
T 3is5_A 101 TCEGGELLERIV 112 (285)
T ss_dssp CCSCCBHHHHHH
T ss_pred eCCCCcHHHHHH
Confidence 999999999884
No 221
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.29 E-value=3.9e-12 Score=129.34 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=81.7
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-cc
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD-FK 505 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~-~~ 505 (524)
.++....++|+..+.||+|+||.||+|.+. ++.||||.++... ..+.|.+|+++|++++|||||++++++...+ ..
T Consensus 186 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 262 (450)
T 1k9a_A 186 SGWALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL 262 (450)
T ss_dssp TTCBCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCE
T ss_pred cccccChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCce
Confidence 444556678999999999999999999984 6799999997543 4567999999999999999999999987765 79
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 263 ~iv~e~~~~g~L~~~l~~ 280 (450)
T 1k9a_A 263 YIVTEYMAKGSLVDYLRS 280 (450)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHh
Confidence 999999999999999964
No 222
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.29 E-value=3.5e-12 Score=124.00 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=74.8
Q ss_pred hhccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
..++|+..+.||+|+||.||+|+. .+++.||+|.+.... ......+.+|+.+++.++||||+++++++..++
T Consensus 15 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 94 (327)
T 3a62_A 15 RPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG 94 (327)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS
T ss_pred CHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC
Confidence 346799999999999999999996 468899999997542 223456889999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..|+||||+++|+|.+++++
T Consensus 95 ~~~lv~e~~~~~~L~~~l~~ 114 (327)
T 3a62_A 95 KLYLILEYLSGGELFMQLER 114 (327)
T ss_dssp CEEEEEECCTTEEHHHHHHH
T ss_pred EEEEEEeCCCCCcHHHHHHh
Confidence 99999999999999998863
No 223
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.28 E-value=5.4e-12 Score=122.41 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=77.8
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc----c
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF----K 505 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----~ 505 (524)
....++|+..+.||+|+||.||+|+.. ++.||||++..... ....+.+|+.++++++|||||++++++..... .
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 97 (322)
T 3soc_A 20 YFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL 97 (322)
T ss_dssp EETTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred ccchhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence 344568999999999999999999975 68899999975443 34456679999999999999999999987543 6
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 98 ~lv~e~~~~g~L~~~l~~ 115 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKA 115 (322)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHh
Confidence 999999999999999864
No 224
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.28 E-value=5.6e-12 Score=123.73 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=79.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|.++++.+ +||||+++++++.+.+..|+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 46799999999999999999997 468999999997543 23456688999999988 79999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 102 v~E~~~gg~L~~~l~~ 117 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQK 117 (353)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEeCCCCCcHHHHHHH
Confidence 9999999999999864
No 225
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.28 E-value=6.9e-12 Score=120.57 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=77.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
.++|...+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 45789999999999999999997 47899999999865544556788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHH
Q 040301 512 LLNISITIIRR 522 (524)
Q Consensus 512 ~~~gsL~~~l~ 522 (524)
+++|+|.+++.
T Consensus 88 ~~~~~L~~~l~ 98 (304)
T 2jam_A 88 VSGGELFDRIL 98 (304)
T ss_dssp CCSCBHHHHHH
T ss_pred CCCccHHHHHH
Confidence 99999999885
No 226
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.28 E-value=4.7e-12 Score=122.25 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=83.0
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSC 499 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~ 499 (524)
++....++|+..+.||+|+||.||+|+. .+++.||||.+.... ....+.+.+|+.+++++ +||||+++++++
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~ 96 (313)
T 1t46_A 17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGAC 96 (313)
T ss_dssp GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEE
Confidence 3445567899999999999999999984 346789999997544 34567899999999999 999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++..++||||+++|+|.+++++
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~ 120 (313)
T 1t46_A 97 TIGGPTLVITEYCCYGDLLNFLRR 120 (313)
T ss_dssp CSSSSCEEEEECCTTEEHHHHHHH
T ss_pred ecCCCcEEEEecCCCCCHHHHHHh
Confidence 999999999999999999999864
No 227
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.28 E-value=7.9e-12 Score=123.27 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=81.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++..++..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 46799999999999999999997 468899999997643 4456789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 112 ~~~~~~L~~~l~~ 124 (360)
T 3eqc_A 112 HMDGGSLDQVLKK 124 (360)
T ss_dssp CCTTCBHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9999999999864
No 228
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.28 E-value=1e-11 Score=120.06 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=78.5
Q ss_pred cccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 510 (524)
+.|+.. +.||+|+||.||+|.. .+++.||||++........+.+.+|++++.++ +||||+++++++.+++..++|||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 457764 6899999999999995 57899999999765544567889999999985 79999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 92 ~~~~~~L~~~l~~ 104 (316)
T 2ac3_A 92 KMRGGSILSHIHK 104 (316)
T ss_dssp CCTTCBHHHHHHH
T ss_pred cCCCCcHHHHHhc
Confidence 9999999999853
No 229
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.28 E-value=5.4e-12 Score=123.11 Aligned_cols=95 Identities=21% Similarity=0.326 Sum_probs=81.2
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe--------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI--------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
+....++|+..+.||+|+||.||+|.. .++..||||++.... ....+.+.+|+++++++ +||||++++++
T Consensus 30 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 109 (334)
T 2pvf_A 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA 109 (334)
T ss_dssp TBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEE
Confidence 344567899999999999999999985 246789999997543 44567899999999999 99999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++..++||||+++|+|.+++++
T Consensus 110 ~~~~~~~~lv~e~~~~~~L~~~l~~ 134 (334)
T 2pvf_A 110 CTQDGPLYVIVEYASKGNLREYLRA 134 (334)
T ss_dssp ECSSSCCEEEEECCTTCBHHHHHHT
T ss_pred EccCCceEEEEECCCCCcHHHHHHH
Confidence 9999999999999999999999864
No 230
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.27 E-value=5.4e-12 Score=123.34 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=79.7
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~ 505 (524)
...++|+..+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|.+++..+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 3457899999999999999999997 468899999997643 22356678899999876 999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|+||||+++|+|.+++++
T Consensus 94 ~lv~E~~~gg~L~~~l~~ 111 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQS 111 (345)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHH
Confidence 999999999999999864
No 231
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.27 E-value=3.6e-12 Score=132.36 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=83.0
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++...++|+..+.||+|+||.||+|.+.++..||||+++.... ..++|.+|+++|++++|||||++++++.+ +..
T Consensus 259 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~ 336 (535)
T 2h8h_A 259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPI 336 (535)
T ss_dssp TTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred ccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccc
Confidence 4555666778999999999999999999987777899999976442 35679999999999999999999999876 779
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++|||||++|+|.++++
T Consensus 337 ~lv~e~~~~gsL~~~l~ 353 (535)
T 2h8h_A 337 YIVTEYMSKGSLLDFLK 353 (535)
T ss_dssp EEEECCCTTEEHHHHHS
T ss_pred eEeeehhcCCcHHHHHh
Confidence 99999999999999986
No 232
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=124.46 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=73.5
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|... +++.||||.+.... ..+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 4567999999999999999999974 57889999997543 34668899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 129 ~~~~~~L~~~l~~ 141 (349)
T 2w4o_A 129 LVTGGELFDRIVE 141 (349)
T ss_dssp CCCSCBHHHHHTT
T ss_pred eCCCCCHHHHHHh
Confidence 9999999998854
No 233
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.27 E-value=2.2e-12 Score=125.26 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=76.8
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|... +++.||||.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 367999999999999999999974 78899999996543 2334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
||++|+|.++++
T Consensus 86 ~~~~~~L~~~l~ 97 (323)
T 3tki_A 86 YCSGGELFDRIE 97 (323)
T ss_dssp CCTTEEGGGGSB
T ss_pred cCCCCcHHHHHh
Confidence 999999988764
No 234
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.27 E-value=5.9e-12 Score=125.25 Aligned_cols=94 Identities=21% Similarity=0.323 Sum_probs=81.0
Q ss_pred hhhhccccccCcccCCCCceEEEEEe--------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI--------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSC 499 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~ 499 (524)
....++|...+.||+|+||.||+|.. .++..||||++.... ....+++.+|+++++++ +||||+++++++
T Consensus 65 ~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~ 144 (382)
T 3tt0_A 65 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGAC 144 (382)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeee
Confidence 34456889999999999999999985 123579999997543 44567899999999999 999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.+++..++||||+++|+|.+++++
T Consensus 145 ~~~~~~~lv~e~~~~g~L~~~l~~ 168 (382)
T 3tt0_A 145 TQDGPLYVIVEYASKGNLREYLQA 168 (382)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHH
T ss_pred ccCCceEEEEEecCCCcHHHHHHH
Confidence 999999999999999999999864
No 235
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.26 E-value=1e-11 Score=118.25 Aligned_cols=92 Identities=23% Similarity=0.183 Sum_probs=81.4
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|... +++.||+|.+.... .....++.+|+..+..+ +||||+++++++.+++..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 4567999999999999999999974 78999999997532 34567788999999999 99999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 89 v~e~~~~~~L~~~l~~ 104 (289)
T 1x8b_A 89 QNEYCNGGSLADAISE 104 (289)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEecCCCcHHHHHHh
Confidence 9999999999999864
No 236
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=118.47 Aligned_cols=90 Identities=26% Similarity=0.395 Sum_probs=77.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
++|.....||+|+||.||+|.. .+++.||||.+........+.+.+|+.+++.++||||+++++++...+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 3455566999999999999996 568899999997765556678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 102 ~~~~L~~~l~~ 112 (295)
T 2clq_A 102 PGGSLSALLRS 112 (295)
T ss_dssp SEEEHHHHHHH
T ss_pred CCCCHHHHHHh
Confidence 99999999864
No 237
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.26 E-value=8.4e-12 Score=119.78 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=78.9
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|... +++.+|+|.+........+.+.+|+++++.++||||+++++++..++..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 4467999999999999999999974 588999999976554556789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 97 ~~~~~~l~~~~~~ 109 (302)
T 2j7t_A 97 FCPGGAVDAIMLE 109 (302)
T ss_dssp CCTTEEHHHHHHH
T ss_pred eCCCCcHHHHHHh
Confidence 9999999998753
No 238
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.26 E-value=9.6e-12 Score=120.31 Aligned_cols=94 Identities=15% Similarity=0.079 Sum_probs=80.3
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCc
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDF 504 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~ 504 (524)
....++|+..+.||+|+||.||++.. .+++.||||++........+.+.+|+++++.++||||+++++++.. ...
T Consensus 25 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (317)
T 2buj_A 25 IIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE 104 (317)
T ss_dssp EETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred EECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence 34457899999999999999999996 5789999999976666667889999999999999999999999973 447
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 105 ~~lv~e~~~~~~L~~~l~~ 123 (317)
T 2buj_A 105 AWLLLPFFKRGTLWNEIER 123 (317)
T ss_dssp EEEEEECCTTCBHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHH
Confidence 8999999999999999864
No 239
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.26 E-value=6e-12 Score=119.37 Aligned_cols=94 Identities=18% Similarity=0.292 Sum_probs=81.3
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
+++....++|+..+.||+|+||.||+|...++..||+|.+..... ..+.+.+|++++++++||||+++++++. .+..+
T Consensus 6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~ 83 (279)
T 1qpc_A 6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIY 83 (279)
T ss_dssp CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred hhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcE
Confidence 345556678999999999999999999988788899999975432 3567899999999999999999999986 55689
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+||||+++|+|.++++
T Consensus 84 ~v~e~~~~~~L~~~l~ 99 (279)
T 1qpc_A 84 IITEYMENGSLVDFLK 99 (279)
T ss_dssp EEEECCTTCBHHHHTT
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999999999999885
No 240
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.26 E-value=1.5e-11 Score=116.96 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=80.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 46799999999999999999996 468899999997543 345577889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+++|+|.+++.
T Consensus 85 e~~~~~~l~~~~~ 97 (284)
T 3kk8_A 85 DLVTGGELFEDIV 97 (284)
T ss_dssp CCCCSCBHHHHHH
T ss_pred ecCCCCCHHHHHH
Confidence 9999999988774
No 241
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.26 E-value=9.4e-12 Score=118.04 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=80.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ......+.+|++++++++||||+++++++.+.+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 456799999999999999999996 467789999996543 2235678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 87 v~e~~~~~~l~~~l~~ 102 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQK 102 (279)
T ss_dssp EECCCTTEEHHHHHHH
T ss_pred EEecCCCCcHHHHHHh
Confidence 9999999999998864
No 242
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.26 E-value=6e-12 Score=123.28 Aligned_cols=96 Identities=19% Similarity=0.300 Sum_probs=80.8
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEE
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSC 499 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~ 499 (524)
++....++|...+.||+|+||.||+|.. .++..||||.+.... ....+.+.+|+.+++++ +||||+++++++
T Consensus 39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 118 (344)
T 1rjb_A 39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC 118 (344)
T ss_dssp GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 4455678899999999999999999995 235679999997543 33456789999999999 999999999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...+..++||||+++|+|.+++++
T Consensus 119 ~~~~~~~lv~e~~~~g~L~~~l~~ 142 (344)
T 1rjb_A 119 TLSGPIYLIFEYCCYGDLLNYLRS 142 (344)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHT
T ss_pred eeCCccEEEEecCCCCcHHHHHhh
Confidence 999999999999999999999864
No 243
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.26 E-value=7.8e-12 Score=120.63 Aligned_cols=93 Identities=19% Similarity=0.304 Sum_probs=78.9
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+...++|+..+.||+|+||.||+|...+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..++
T Consensus 17 q~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 96 (311)
T 3niz_A 17 QGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTL 96 (311)
T ss_dssp ECSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEE
T ss_pred cchHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEE
Confidence 34457899999999999999999998889999999996543 2235678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||+ |+|.+++.+
T Consensus 97 v~e~~~-~~l~~~~~~ 111 (311)
T 3niz_A 97 VFEFME-KDLKKVLDE 111 (311)
T ss_dssp EEECCS-EEHHHHHHT
T ss_pred EEcCCC-CCHHHHHHh
Confidence 999998 488887753
No 244
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=8e-10 Score=110.23 Aligned_cols=297 Identities=12% Similarity=0.121 Sum_probs=198.6
Q ss_pred ccccCCccccccc-CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC---CCCCCChhHhcCcccccEEE
Q 040301 32 FSGHIPNTFGNLR-HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP---LGGILPPVIGNFSASFQNFY 107 (524)
Q Consensus 32 l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~~L~~L~ 107 (524)
++......|.++. .|+.+.+-. .++.+.. .+|.++++|+.+.+..|. ++.+....|.... +|+.+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~--------~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-~L~~i~ 120 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGS--------NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-ELTDIP 120 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-TCCEECT--------TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-TCCBCG
T ss_pred eeEcCHhhccCCCCcCEEEEECC-CeeEEhH--------HHhhCCccCceEeecCCCCCeeeEechhhchhcc-cceeec
Confidence 3434456677764 589999865 4777765 789999999999998764 5555556676665 777777
Q ss_pred eccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccc
Q 040301 108 AFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 108 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
+..+ +.......|.+..+|+.+.+..+ +..+...+|..+.+|+.+.+..+ ++..-..+|. ...|+.+.+..+-..
T Consensus 121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~- 195 (394)
T 4gt6_A 121 ILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR- 195 (394)
T ss_dssp GGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-
T ss_pred cCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-
Confidence 6654 44455667888899999998654 44466778888999999988765 4434344454 467888888765432
Q ss_pred cCCccccCCCCCCEEEccCCcCCCccChhc--------------cCCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEcC
Q 040301 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSL--------------WSLEYILMINLSSNSLNDSLPSNIQTLKVLRVLDLS 253 (524)
Q Consensus 188 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 253 (524)
.....|..+.+++......+.... ....+ .....+..+.+.. .+...-...|..+..|+.+.+.
T Consensus 196 i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 196 IGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp ECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECC
T ss_pred cccchhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecc
Confidence 455667778888887766554331 11111 1122344444432 2333345678889999999997
Q ss_pred CCcCccccccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 254 RNQLSGDISTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 254 ~n~l~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
.+...-....+..+++|+.+.+.. .++......|..+.+|+.+++..+ ++.....+|..+.+|+.+.+..+ ++. +.
T Consensus 274 ~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~ 349 (394)
T 4gt6_A 274 DSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IP 349 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CC
T ss_pred cccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-Eh
Confidence 665432236788899999999974 566566678999999999999765 55566678999999999999754 321 11
Q ss_pred --CCCcCCCCCcccccCC
Q 040301 334 --VKGSFKNFSAESFFGN 349 (524)
Q Consensus 334 --~~~~~~~~~~~~~~~n 349 (524)
.......+..+.+.++
T Consensus 350 ~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGGGTTCTTCCEEEESSC
T ss_pred HhHhhCCCCCCEEEECCc
Confidence 1122345555565554
No 245
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.25 E-value=1.1e-11 Score=120.29 Aligned_cols=92 Identities=21% Similarity=0.198 Sum_probs=80.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
..+.|+..+.||+|+||.||+|.. .+++.||+|.+..... ...+++.+|+.+++.++||||+++++++.+++.
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 89 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD 89 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence 346799999999999999999997 4688999999975431 135779999999999999999999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 90 ~~lv~e~~~~~~L~~~l~~ 108 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLAQ 108 (321)
T ss_dssp EEEEECCCCSCBHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHh
Confidence 9999999999999999864
No 246
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.25 E-value=7e-12 Score=127.70 Aligned_cols=91 Identities=22% Similarity=0.213 Sum_probs=80.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|...+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 35789999999999999999997 4789999999975432 2356789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++.+
T Consensus 95 ~E~~~gg~L~~~l~~ 109 (476)
T 2y94_A 95 MEYVSGGELFDYICK 109 (476)
T ss_dssp EECCSSEEHHHHTTS
T ss_pred EeCCCCCcHHHHHHh
Confidence 999999999998853
No 247
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.25 E-value=7.2e-12 Score=124.55 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=77.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|+. .+++.||+|+++... ....+.+.+|..++.++ +|||||++++++.+++..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 45799999999999999999997 467889999997643 22334578899999876 89999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 131 V~E~~~gg~L~~~l~~ 146 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQR 146 (396)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEcCCCCcHHHHHHH
Confidence 9999999999998864
No 248
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.25 E-value=7.7e-12 Score=129.45 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=81.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|+. .+|+.||||++.... ......+.+|+++++.++|||||++++++.+.+..|+
T Consensus 182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l 261 (576)
T 2acx_A 182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL 261 (576)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence 456799999999999999999997 478999999997543 2235678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||+||+|.+++++
T Consensus 262 VmEy~~gg~L~~~l~~ 277 (576)
T 2acx_A 262 VLTLMNGGDLKFHIYH 277 (576)
T ss_dssp EECCCCSCBHHHHHHS
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999864
No 249
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.25 E-value=1.3e-11 Score=119.90 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=79.9
Q ss_pred hccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~ 505 (524)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 35788999999999999999984 4578899999987666667789999999999999999999999874 5568
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 102 ~lv~e~~~~~~L~~~l~~ 119 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQR 119 (327)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEeecCCCCHHHHHHh
Confidence 999999999999999864
No 250
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.25 E-value=1.1e-11 Score=120.48 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=78.5
Q ss_pred hhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
...++|+..+.||+|+||.||+|.. .+++.||||.+.... .....++.+|+.++++++||||+++++++...+
T Consensus 27 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 106 (327)
T 2yfx_A 27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 106 (327)
T ss_dssp CCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence 3456899999999999999999984 346789999996443 445678999999999999999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 107 ~~~lv~e~~~~~~L~~~l~~ 126 (327)
T 2yfx_A 107 PRFILMELMAGGDLKSFLRE 126 (327)
T ss_dssp SCEEEEECCTTEEHHHHHHH
T ss_pred CcEEEEecCCCCcHHHHHHh
Confidence 99999999999999999864
No 251
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.25 E-value=9.5e-12 Score=120.39 Aligned_cols=89 Identities=19% Similarity=0.316 Sum_probs=64.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 46799999999999999999996 468999999997543 2234678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|++ |+|.++++
T Consensus 84 ~~~-~~L~~~l~ 94 (317)
T 2pmi_A 84 FMD-NDLKKYMD 94 (317)
T ss_dssp CCC-CBHHHHHH
T ss_pred ecC-CCHHHHHH
Confidence 998 69999885
No 252
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.25 E-value=2e-11 Score=117.60 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=79.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc---chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ---LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|.. .+++.||+|.+... .....+.+.+|+.++++++||||+++++++..++..++
T Consensus 30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 109 (310)
T 2wqm_A 30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI 109 (310)
T ss_dssp SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence 345799999999999999999996 57899999999752 24456789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 110 v~e~~~~~~L~~~l~~ 125 (310)
T 2wqm_A 110 VLELADAGDLSRMIKH 125 (310)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEecCCCCCHHHHHHH
Confidence 9999999999999863
No 253
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.25 E-value=1.6e-11 Score=126.70 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=77.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-------------HHHHHHHHHHHHHhcCCCCCccceeE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-------------RAFRSFDSECEVLRNVCHRNLIKILS 497 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-------------~~~~~~~~Ei~~l~~l~H~niv~l~~ 497 (524)
..+.|...+.||+|+||.||+|.. .+++.||+|.+..... ...+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 456799999999999999999997 4678999999975331 23467899999999999999999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHH
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++.++...++|||||++|+|.+++.
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~ 138 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQII 138 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHH
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHH
Confidence 9999999999999999999999875
No 254
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.24 E-value=1e-11 Score=127.87 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=75.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.+.|+..+.||+|+||.||+|+. .++..||+|.+.... ......+.+|+.+++.++|||||+++++|.+....|+||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 45699999999999999999997 468899999997543 223567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
|||++|+|.+++.
T Consensus 116 e~~~~g~L~~~~~ 128 (494)
T 3lij_A 116 ECYKGGELFDEII 128 (494)
T ss_dssp ECCCSCBHHHHHH
T ss_pred ecCCCCcHHHHHH
Confidence 9999999998875
No 255
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.24 E-value=1.9e-11 Score=116.87 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=80.9
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|...+.||+|+||.||+|... +++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..++
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l 92 (294)
T 2rku_A 13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV 92 (294)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE
Confidence 3467899999999999999999974 57889999997542 3456788999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 93 v~e~~~~~~L~~~~~~ 108 (294)
T 2rku_A 93 VLELCRRRSLLELHKR 108 (294)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEecCCCCCHHHHHHh
Confidence 9999999999998753
No 256
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.24 E-value=8.9e-12 Score=124.53 Aligned_cols=91 Identities=23% Similarity=0.290 Sum_probs=78.9
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--cceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD--FKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~~lv 508 (524)
.+.|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 357899999999999999999974 58999999997543 334567889999999999999999999998765 67999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 88 ~e~~~~g~L~~~l~~ 102 (396)
T 4eut_A 88 MEFCPCGSLYTVLEE 102 (396)
T ss_dssp ECCCTTEEHHHHTTS
T ss_pred EecCCCCCHHHHHHh
Confidence 999999999999864
No 257
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.24 E-value=1.4e-11 Score=116.88 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=79.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~l 507 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++.. ....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 46799999999999999999997 468999999997543 3456789999999999999999999998854 567899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 85 v~e~~~~~~L~~~l~~ 100 (279)
T 2w5a_A 85 VMEYCEGGDLASVITK 100 (279)
T ss_dssp EEECCTTEEHHHHHHH
T ss_pred EEeCCCCCCHHHHHHh
Confidence 9999999999999863
No 258
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.24 E-value=1.5e-11 Score=119.75 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=83.4
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC-CC-----CEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS-DW-----TNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
+.+....++|+..+.||+|+||.||+|... ++ ..||+|.+.... ....+.+.+|+++++.+ +||||++++++
T Consensus 39 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~ 118 (333)
T 2i1m_A 39 EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118 (333)
T ss_dssp GGGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence 345666788999999999999999999963 22 479999997643 34567899999999999 89999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++..++||||+++|+|.+++++
T Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~ 143 (333)
T 2i1m_A 119 CTHGGPVLVITEYCCYGDLLNFLRR 143 (333)
T ss_dssp ECSSSSCEEEEECCTTEEHHHHHHH
T ss_pred EecCCceEEEEecCCCCcHHHHHHH
Confidence 9999999999999999999999863
No 259
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.24 E-value=1.3e-11 Score=116.88 Aligned_cols=92 Identities=20% Similarity=0.333 Sum_probs=80.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|+. .+++.||||.+..... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 88 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL 88 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence 346799999999999999999996 5789999999975432 224678999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 89 v~e~~~~~~L~~~l~~ 104 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKN 104 (278)
T ss_dssp EEECCTTEEHHHHHHT
T ss_pred EEecCCCCcHHHHHhh
Confidence 9999999999999864
No 260
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.24 E-value=1.5e-11 Score=116.83 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=79.6
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch------HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
++|+..+.||+|+||.||+|... +++.||+|.+..... ...+.+.+|+.++++++||||+++++++..++..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 56889999999999999999974 689999999975431 13578999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 85 lv~e~~~~~~L~~~l~~ 101 (283)
T 3bhy_A 85 LILELVSGGELFDFLAE 101 (283)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEeecCCCcHHHHHHh
Confidence 99999999999999853
No 261
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.24 E-value=1.6e-11 Score=116.13 Aligned_cols=91 Identities=22% Similarity=0.218 Sum_probs=80.2
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|...+.||+|+||.||+|... +++.||||.+..... ...+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 357899999999999999999974 789999999975432 2356789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 90 ~e~~~~~~L~~~l~~ 104 (276)
T 2h6d_A 90 MEYVSGGELFDYICK 104 (276)
T ss_dssp EECCCSCBHHHHHHH
T ss_pred EeccCCCcHHHHHhc
Confidence 999999999999853
No 262
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.24 E-value=1.8e-11 Score=118.81 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=72.9
Q ss_pred cCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEEcccCCCC
Q 040301 439 CNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~~~gs 516 (524)
.+.||+|+||.||+|.. .+++.||||.+.... ...+.+|+.+++.+. ||||+++++++.++...|+|||||++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM---EANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG---HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChhh---hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 37899999999999997 468999999997543 356778999999997 9999999999999999999999999999
Q ss_pred HHHHHHh
Q 040301 517 ITIIRRH 523 (524)
Q Consensus 517 L~~~l~~ 523 (524)
|.+++++
T Consensus 93 L~~~l~~ 99 (325)
T 3kn6_A 93 LFERIKK 99 (325)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
No 263
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=119.02 Aligned_cols=91 Identities=25% Similarity=0.319 Sum_probs=79.0
Q ss_pred hccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC--cc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD--FK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~--~~ 505 (524)
.++|+..+.||+|+||.||+|.+ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 45688899999999999999984 357889999998766666788999999999999999999999987654 78
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 120 ~lv~e~~~~~~L~~~l~~ 137 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQK 137 (326)
T ss_dssp EEEECCCTTCBHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHh
Confidence 999999999999999864
No 264
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.24 E-value=2.1e-11 Score=118.89 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=81.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|...+.||+|+||.||++.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus 39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 118 (335)
T 2owb_A 39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV 118 (335)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence 346799999999999999999997 457889999997542 3456788999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 119 v~e~~~~~~L~~~~~~ 134 (335)
T 2owb_A 119 VLELCRRRSLLELHKR 134 (335)
T ss_dssp EECCCTTCBHHHHHHH
T ss_pred EEecCCCCCHHHHHhc
Confidence 9999999999998753
No 265
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.23 E-value=1.3e-11 Score=126.98 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=80.3
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
..+.|+..+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++||||+++++++.+....++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 346799999999999999999997 478999999996432 23457789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
||||++|+|.+++.
T Consensus 100 ~e~~~~~~L~~~~~ 113 (486)
T 3mwu_A 100 GELYTGGELFDEII 113 (486)
T ss_dssp ECCCCSCBHHHHHH
T ss_pred EEcCCCCcHHHHHH
Confidence 99999999998874
No 266
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.23 E-value=8.8e-12 Score=121.37 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=77.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|...+.||+|+||.||+|.. .+++.||+|.+..... ...+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 35799999999999999999996 6789999999975431 2245788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||+ +|+|.+++.
T Consensus 88 ~E~~-~g~l~~~l~ 100 (336)
T 3h4j_B 88 IEYA-GGELFDYIV 100 (336)
T ss_dssp ECCC-CEEHHHHHH
T ss_pred EECC-CCcHHHHHH
Confidence 9999 689999875
No 267
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.23 E-value=6.4e-12 Score=121.26 Aligned_cols=91 Identities=15% Similarity=0.260 Sum_probs=78.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc---
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK--- 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~--- 505 (524)
.+.|+..+.||+|+||.||+|+. .+++.||||.+.... ......+.+|++++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46799999999999999999996 578899999997543 33456789999999999999999999999876544
Q ss_pred -eEEEcccCCCCHHHHHHh
Q 040301 506 -ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 -~lv~e~~~~gsL~~~l~~ 523 (524)
|+||||+++|+|.+++++
T Consensus 91 ~~lv~e~~~g~~L~~~l~~ 109 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHT 109 (311)
T ss_dssp EEEEEECCCEEEHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHh
Confidence 999999999999999863
No 268
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.23 E-value=1.6e-11 Score=126.70 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=80.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|...+.||+|+||.||+|+. .+|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 46788899999999999999997 4689999999975432 2356788999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||+||+|.+++++
T Consensus 264 mE~~~gg~L~~~l~~ 278 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYN 278 (543)
T ss_dssp ECCCTTCBHHHHHHT
T ss_pred EEeccCCCHHHHHHH
Confidence 999999999999864
No 269
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.23 E-value=1e-11 Score=120.45 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=74.4
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCC-C---CEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEE
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISD-W---TNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSC 499 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~-~---~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~ 499 (524)
++++....++|+..+.||+|+||.||+|.... + ..||||.+.... ....+++.+|++++++++||||+++++++
T Consensus 15 ~~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~ 94 (323)
T 3qup_A 15 LEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVS 94 (323)
T ss_dssp -CTTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEE
T ss_pred hhhcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhcee
Confidence 44555667789999999999999999999643 3 279999997542 34567899999999999999999999999
Q ss_pred EcCCcc------eEEEcccCCCCHHHHHH
Q 040301 500 SNPDFK------ALMWGRLLNISITIIRR 522 (524)
Q Consensus 500 ~~~~~~------~lv~e~~~~gsL~~~l~ 522 (524)
...+.. ++||||+++|+|.++++
T Consensus 95 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~ 123 (323)
T 3qup_A 95 LRSRAKGRLPIPMVILPFMKHGDLHAFLL 123 (323)
T ss_dssp ECC-------CEEEEEECCTTCBHHHHHH
T ss_pred eccccccCCCccEEEEEeccCCcHHHHHH
Confidence 887665 99999999999999985
No 270
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.23 E-value=1.1e-11 Score=122.36 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=70.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHH-HhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEV-LRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~-l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ......+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 46799999999999999999997 468899999997643 2234556777776 577899999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 117 v~E~~~gg~L~~~l~~ 132 (373)
T 2r5t_A 117 VLDYINGGELFYHLQR 132 (373)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEeCCCCCcHHHHHHh
Confidence 9999999999999864
No 271
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.23 E-value=1.7e-11 Score=117.60 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=74.9
Q ss_pred ccccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--Ccc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFK 505 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~ 505 (524)
+.|+..+.||+|+||.||+|++ .+++.||+|.+.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4588889999999999999984 467889999997543 23457789999999999999999999999876 668
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++||||+++|+|.++++
T Consensus 101 ~lv~e~~~~~~L~~~l~ 117 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLP 117 (302)
T ss_dssp EEEEECCTTCBHHHHHH
T ss_pred EEEEEeCCCCcHHHHHH
Confidence 99999999999999984
No 272
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=118.21 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=78.9
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 5788999999999999999997 468999999986543 3345778899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.++++
T Consensus 83 ~~~~~~l~~~~~ 94 (311)
T 4agu_A 83 YCDHTVLHELDR 94 (311)
T ss_dssp CCSEEHHHHHHH
T ss_pred eCCCchHHHHHh
Confidence 999999998875
No 273
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.22 E-value=2.3e-11 Score=116.50 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=79.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---------hHHHHHHHHHHHHHhcCC-CCCccceeEEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---------ERAFRSFDSECEVLRNVC-HRNLIKILSSCS 500 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---------~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~ 500 (524)
-.++|+..+.||+|+||.||+|.. .+++.||||.++... ....+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 346799999999999999999997 468899999996532 123567889999999995 999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.++..++||||+++|+|.+++++
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~ 117 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTE 117 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHH
T ss_pred cCCeEEEEEeccCCCcHHHHHhc
Confidence 99999999999999999999863
No 274
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.22 E-value=2e-11 Score=117.58 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=80.2
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++..++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 46799999999999999999997 468889999997543 23457889999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 113 ~e~~~~~~L~~~l~~ 127 (309)
T 2h34_A 113 MRLINGVDLAAMLRR 127 (309)
T ss_dssp EECCCCEEHHHHHHH
T ss_pred EEecCCCCHHHHHHh
Confidence 999999999999864
No 275
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.22 E-value=9e-12 Score=117.56 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=74.1
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccch----HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE----RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|... ++.+|||.+..... ...+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 457889999999999999999974 78899999865432 2356789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||+++|+|.++++
T Consensus 85 ~e~~~~~~L~~~~~ 98 (271)
T 3dtc_A 85 MEFARGGPLNRVLS 98 (271)
T ss_dssp EECCTTEEHHHHHT
T ss_pred EEcCCCCCHHHHhh
Confidence 99999999999875
No 276
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.22 E-value=1.6e-11 Score=116.58 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=78.8
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.....++|+..+.||+|+||.||+|... .+..||+|.+.... ....+.+.+|+.++++++||||+++++++ .++
T Consensus 10 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~ 88 (281)
T 1mp8_A 10 YEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TEN 88 (281)
T ss_dssp CBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSS
T ss_pred eEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccC
Confidence 3445578999999999999999999963 24569999986533 44567899999999999999999999998 456
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.++++.
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~ 108 (281)
T 1mp8_A 89 PVWIIMELCTLGELRSFLQV 108 (281)
T ss_dssp SCEEEEECCTTEEHHHHHHH
T ss_pred ccEEEEecCCCCCHHHHHHh
Confidence 78999999999999999863
No 277
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.22 E-value=2.5e-11 Score=117.42 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=76.0
Q ss_pred ccccCcccCCCCceEEEEEe-----CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC--CcceE
Q 040301 436 FNECNLLGTGSFGSVYKGTI-----SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--DFKAL 507 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--~~~~l 507 (524)
|+..+.||+|+||.||++.+ .+++.||||++.... ....+.+.+|++++++++||||+++++++.+. ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 48889999999999999875 257889999997543 44567899999999999999999999999874 56899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 113 v~e~~~~~~L~~~l~~ 128 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPR 128 (318)
T ss_dssp EECCCTTCBHHHHGGG
T ss_pred EEecccCCcHHHHHhh
Confidence 9999999999999864
No 278
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.22 E-value=1.1e-11 Score=118.09 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=77.9
Q ss_pred ccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|+..+.||+|+||.||+|...+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 4688899999999999999998778999999996543 22346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
+++ +|.++++.
T Consensus 82 ~~~-~l~~~~~~ 92 (288)
T 1ob3_A 82 LDQ-DLKKLLDV 92 (288)
T ss_dssp CSE-EHHHHHHT
T ss_pred cCC-CHHHHHHh
Confidence 985 99988753
No 279
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.22 E-value=1.6e-11 Score=118.56 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=84.0
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEe------CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccce
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTI------SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKI 495 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l 495 (524)
+....+....++|+..+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|+++++++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34456666778999999999999999999984 346789999997644 34456899999999999 79999999
Q ss_pred eEEEEcCC-cceEEEcccCCCCHHHHHHh
Q 040301 496 LSSCSNPD-FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 496 ~~~~~~~~-~~~lv~e~~~~gsL~~~l~~ 523 (524)
++++...+ ..++||||+++|+|.+++++
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 125 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRS 125 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHT
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHh
Confidence 99988754 58999999999999999864
No 280
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.22 E-value=1.8e-11 Score=116.39 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=79.5
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|++++++++||||+++++++.+++..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 357899999999999999999974 57789999996543 22356789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 93 ~e~~~~~~L~~~l~~ 107 (284)
T 2vgo_A 93 LEFAPRGELYKELQK 107 (284)
T ss_dssp ECCCTTEEHHHHHHH
T ss_pred EEeCCCCcHHHHHHh
Confidence 999999999998863
No 281
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.21 E-value=1.4e-11 Score=120.89 Aligned_cols=92 Identities=20% Similarity=0.127 Sum_probs=79.6
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcce
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 506 (524)
..++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|..++..+ +||+|+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 3467999999999999999999974 57889999997643 23356788999999988 8999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 98 lv~E~~~gg~L~~~l~~ 114 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQ 114 (353)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHh
Confidence 99999999999999864
No 282
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=117.98 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=74.9
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEccc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
.++|+..+.||+|+||.||+|... ++.||||.+.... ..+.|.+|++++++++||||+++++++. +..++||||+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~ 81 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESES--ERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA 81 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTT--HHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChh--HHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence 356888899999999999999974 6789999996532 4578999999999999999999999886 4589999999
Q ss_pred CCCCHHHHHHh
Q 040301 513 LNISITIIRRH 523 (524)
Q Consensus 513 ~~gsL~~~l~~ 523 (524)
++|+|.+++++
T Consensus 82 ~~~~L~~~l~~ 92 (307)
T 2eva_A 82 EGGSLYNVLHG 92 (307)
T ss_dssp TTCBHHHHHHC
T ss_pred CCCCHHHHHhc
Confidence 99999999864
No 283
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.21 E-value=9.5e-12 Score=126.42 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=72.2
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..++|+..+.||+|+||.||+|.. .+++.||||.+.... ......+.+|+++++.++||||+++++++.+.+..++
T Consensus 146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l 225 (446)
T 4ejn_A 146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF 225 (446)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence 346799999999999999999996 578999999997542 2345678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++++
T Consensus 226 v~e~~~~~~L~~~l~~ 241 (446)
T 4ejn_A 226 VMEYANGGELFFHLSR 241 (446)
T ss_dssp EECCCSSCBHHHHHHH
T ss_pred EEeeCCCCcHHHHHHh
Confidence 9999999999998853
No 284
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.21 E-value=2.6e-11 Score=116.46 Aligned_cols=91 Identities=25% Similarity=0.258 Sum_probs=80.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.+.|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 35688899999999999999996 568899999997543 3346789999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+++|+|.+++++
T Consensus 101 ~~~~~~L~~~~~~ 113 (303)
T 3a7i_A 101 YLGGGSALDLLEP 113 (303)
T ss_dssp CCTTEEHHHHHTT
T ss_pred eCCCCcHHHHHhc
Confidence 9999999998853
No 285
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.21 E-value=8.7e-12 Score=119.69 Aligned_cols=94 Identities=21% Similarity=0.238 Sum_probs=66.2
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
....++|+..+.||+|+||.||+|.. .+++.||||.+.... ....+++.+|+.++++++||||+++++++..++..++
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 90 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL 90 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence 34457899999999999999999996 468899999986543 3345678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 91 v~e~~~~~~L~~~l~~ 106 (303)
T 2vwi_A 91 VMKLLSGGSVLDIIKH 106 (303)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EehhccCCchHHHHHH
Confidence 9999999999999863
No 286
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=120.42 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=84.9
Q ss_pred ccccchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 421 WRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 421 ~~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
...+++.++....+.|+..+.||+|+||.||+|.. .+++.||||.+..... ..+.+.+|+.+++++ +||||++++++
T Consensus 11 ~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~ 89 (326)
T 2x7f_A 11 LDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGA 89 (326)
T ss_dssp -----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEE
T ss_pred chhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeE
Confidence 34566777778889999999999999999999997 5789999999975432 346788999999998 89999999999
Q ss_pred EEc------CCcceEEEcccCCCCHHHHHHh
Q 040301 499 CSN------PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 499 ~~~------~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+.. .+..++||||+++|+|.+++++
T Consensus 90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 120 (326)
T 2x7f_A 90 FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKN 120 (326)
T ss_dssp EEECC--CCCCEEEEEEECCTTEEHHHHHHH
T ss_pred EeeccCccccceEEEEEEcCCCCcHHHHHHh
Confidence 987 4678999999999999999864
No 287
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=4.3e-11 Score=117.32 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=61.9
Q ss_pred EEEccCC-cccccCCcccccccCCCEEEccc-cccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCcc
Q 040301 24 VMDLSSN-SFSGHIPNTFGNLRHLSSLLLTW-NNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFSA 101 (524)
Q Consensus 24 ~Ldls~n-~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 101 (524)
.++++++ +++ .+|. |..+++|++|+|++ |.++.++. ..|.++++|++|+|++|.+.+..|..|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~~~~~----- 76 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLEL--------RDLRGLGELRNLTIVKSGLRFVAPDAF----- 76 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECG--------GGSCSCCCCSEEECCSSCCCEECTTGG-----
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcCh--------hHhccccCCCEEECCCCccceeCHHHh-----
Confidence 4577776 676 4666 77777777777775 77766543 556667777777777776665555444
Q ss_pred cccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCccc
Q 040301 102 SFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLE 162 (524)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 162 (524)
.++++|+.|+|++|++++..+..|..++ |+.|+|.+|.+.
T Consensus 77 --------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 --------------------HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp --------------------GSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred --------------------cCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4455555555555555544444444333 555555555554
No 288
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.21 E-value=3.7e-11 Score=114.55 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=77.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~~ 506 (524)
..|...+.||+|+||.||+|.. .++..||+|.+.... ....+.+.+|+.++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 3477778999999999999997 467889999997543 4456789999999999999999999999875 35689
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 106 lv~e~~~~~~L~~~l~~ 122 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKR 122 (290)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEEecCCCCHHHHHHH
Confidence 99999999999999864
No 289
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.21 E-value=2.3e-11 Score=116.74 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=72.9
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhc--CCCCCccceeEEEEcCC----cce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRN--VCHRNLIKILSSCSNPD----FKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~~----~~~ 506 (524)
.++|...+.||+|+||.||+|.. +++.||||++.... ...+.+|.+++.. ++||||+++++++.... ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-TT---HHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEecccc---hhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 36799999999999999999987 47899999986533 3567788888887 79999999999998876 789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 78 lv~e~~~~g~L~~~l~~ 94 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNR 94 (303)
T ss_dssp EEEECCTTCCHHHHHHH
T ss_pred EEEeccCCCCHHHHHhc
Confidence 99999999999999864
No 290
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.20 E-value=1.3e-11 Score=116.74 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=79.7
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 467899999999999999999974 68899999997543 3446788999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.++++
T Consensus 86 ~~~~~~L~~~l~ 97 (276)
T 2yex_A 86 YCSGGELFDRIE 97 (276)
T ss_dssp CCTTEEGGGGSB
T ss_pred ecCCCcHHHHHh
Confidence 999999988764
No 291
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.20 E-value=2.1e-11 Score=125.30 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=81.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
..+.|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 103 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 103 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 345799999999999999999997 478999999996532 2346789999999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
|||||++|+|.+++.+
T Consensus 104 v~e~~~~~~L~~~~~~ 119 (484)
T 3nyv_A 104 VGEVYTGGELFDEIIS 119 (484)
T ss_dssp EECCCCSCBHHHHHHT
T ss_pred EEecCCCCCHHHHHHh
Confidence 9999999999998853
No 292
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.20 E-value=1.1e-11 Score=121.09 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=76.1
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
..++|+..+.||+|+||.||+|.. .+++.||||.++.... .+.+|++++.++ +||||+++++++.+++..|+||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 356799999999999999999997 4688999999976432 234688888887 7999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||++|+|.+++.+
T Consensus 96 E~~~gg~L~~~i~~ 109 (342)
T 2qr7_A 96 ELMKGGELLDKILR 109 (342)
T ss_dssp CCCCSCBHHHHHHT
T ss_pred eCCCCCcHHHHHHH
Confidence 99999999998854
No 293
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.20 E-value=2.7e-11 Score=116.19 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=78.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN---------- 501 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~---------- 501 (524)
.++|+..+.||+|+||.||+|+. .+++.||||.+... ....+.+.+|++++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 46799999999999999999996 47899999999653 3345788999999999999999999999865
Q ss_pred ---CCcceEEEcccCCCCHHHHHHh
Q 040301 502 ---PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ---~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
....++||||+++|+|.+++++
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~ 108 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHS 108 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHH
T ss_pred cccCCceEEEEecCCCCCHHHhhhc
Confidence 3567999999999999999863
No 294
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.20 E-value=2.4e-11 Score=115.68 Aligned_cols=89 Identities=18% Similarity=0.299 Sum_probs=75.8
Q ss_pred hccccccC-cccCCCCceEEEEEeC---CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 433 TDEFNECN-LLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 433 ~~~~~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
.++|.... .||+|+||.||+|.+. ++..||||.+.... ....+.+.+|++++++++||||+++++++ ..+..++
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 45566666 8999999999999853 56789999997643 44567899999999999999999999999 4567999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++|+|.++++
T Consensus 87 v~e~~~~~~L~~~l~ 101 (287)
T 1u59_A 87 VMEMAGGGPLHKFLV 101 (287)
T ss_dssp EEECCTTEEHHHHHT
T ss_pred EEEeCCCCCHHHHHH
Confidence 999999999999985
No 295
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.19 E-value=2.6e-11 Score=118.19 Aligned_cols=91 Identities=23% Similarity=0.336 Sum_probs=77.9
Q ss_pred hccccccCcccCCCCceEEEEEeCC-----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISD-----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
...|+..+.||+|+||.||+|.... +..||||.+.... ......+.+|++++++++||||+++++++.+.+..+
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 3467778899999999999998632 2459999997543 345667999999999999999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 123 lv~e~~~~~~L~~~l~~ 139 (333)
T 1mqb_A 123 IITEYMENGALDKFLRE 139 (333)
T ss_dssp EEEECCTTEEHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHh
Confidence 99999999999999864
No 296
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.19 E-value=4.2e-11 Score=113.28 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=68.1
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 5799999999999999999996 578999999996543 233567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+ +|++.+++.+
T Consensus 93 e~~-~~~l~~~~~~ 105 (275)
T 2eue_A 93 EYA-GNELFDYIVQ 105 (275)
T ss_dssp ECC-CEEHHHHHHT
T ss_pred hhc-CCcHHHHHHh
Confidence 999 6788887753
No 297
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.19 E-value=3.2e-11 Score=115.21 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=75.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 4688999999999999999997 468899999997543 3345778899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++ ++.+++.
T Consensus 82 ~~~~-~l~~~~~ 92 (292)
T 3o0g_A 82 FCDQ-DLKKYFD 92 (292)
T ss_dssp CCSE-EHHHHHH
T ss_pred cCCC-CHHHHHH
Confidence 9985 6665553
No 298
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.19 E-value=2.4e-11 Score=116.02 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=77.5
Q ss_pred hhhhhhhccccccC-cccCCCCceEEEEEe---CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEE
Q 040301 427 LDIQRATDEFNECN-LLGTGSFGSVYKGTI---SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCS 500 (524)
Q Consensus 427 ~~l~~~~~~~~~~~-~ig~g~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~ 500 (524)
+++......|...+ .||+|+||.||+|.+ .+++.||||.+.... ....+++.+|+++++.++||||+++++++
T Consensus 9 ~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~- 87 (291)
T 1xbb_A 9 KEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC- 87 (291)
T ss_dssp --CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-
T ss_pred ceeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-
Confidence 34444556788877 999999999999964 346789999997543 33467899999999999999999999999
Q ss_pred cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
..+..++||||+++|+|.+++++
T Consensus 88 ~~~~~~lv~e~~~~~~L~~~l~~ 110 (291)
T 1xbb_A 88 EAESWMLVMEMAELGPLNKYLQQ 110 (291)
T ss_dssp ESSSEEEEEECCTTEEHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHh
Confidence 56778999999999999999864
No 299
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.19 E-value=3.4e-11 Score=114.65 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=80.5
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
..++|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 99 (287)
T 2wei_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (287)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence 3467999999999999999999974 68899999996543 23467889999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||+++|+|.+++.
T Consensus 100 ~e~~~~~~L~~~l~ 113 (287)
T 2wei_A 100 GELYTGGELFDEII 113 (287)
T ss_dssp ECCCCSCBHHHHHH
T ss_pred EEccCCCCHHHHHH
Confidence 99999999998874
No 300
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=5.7e-11 Score=116.45 Aligned_cols=89 Identities=24% Similarity=0.217 Sum_probs=39.4
Q ss_pred ccCCCCCCeEEccc-CcCcccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 040301 121 IGNLRGLTLLSLFN-NDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLCHLKLMYGIRLTGNKLSGHIPPCLASLTSL 199 (524)
Q Consensus 121 ~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 199 (524)
+..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++.+..+..|..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44444444444443 444444444444444444444444444444444444444444444444444433333333332 4
Q ss_pred CEEEccCCcCC
Q 040301 200 RELHLGSNKLT 210 (524)
Q Consensus 200 ~~L~l~~n~l~ 210 (524)
+.|++.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 44555444443
No 301
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.19 E-value=2.8e-11 Score=117.60 Aligned_cols=90 Identities=27% Similarity=0.398 Sum_probs=75.8
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCE--EEEEEeeccc-hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTN--VAIKIFNLQL-ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~--vavK~~~~~~-~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv 508 (524)
++|+..+.||+|+||.||+|+. .++.. +|+|.+.... ....+.+.+|+++++++ +||||+++++++.+++..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 5788889999999999999996 35554 4999987533 33456789999999999 999999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 105 ~e~~~~~~L~~~l~~ 119 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRK 119 (327)
T ss_dssp ECCCTTCBHHHHHHT
T ss_pred EecCCCCCHHHHHHh
Confidence 999999999999864
No 302
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.19 E-value=4.8e-11 Score=117.79 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=81.0
Q ss_pred hhhhhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcC-CCCCccceeEE
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNV-CHRNLIKILSS 498 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l-~H~niv~l~~~ 498 (524)
.....++|+..+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++++ +||||++++++
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 3444567999999999999999999974 78999999996532 12245788999999999 89999999999
Q ss_pred EEcCCcceEEEcccCCCCHHHHHH
Q 040301 499 CSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 499 ~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
+......++||||+++|+|.++++
T Consensus 169 ~~~~~~~~lv~e~~~g~~L~~~l~ 192 (365)
T 2y7j_A 169 YESSSFMFLVFDLMRKGELFDYLT 192 (365)
T ss_dssp EEBSSEEEEEECCCTTCBHHHHHH
T ss_pred EeeCCEEEEEEEeCCCCcHHHHHH
Confidence 999999999999999999999985
No 303
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.19 E-value=3.3e-11 Score=118.06 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=77.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
...|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+++..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 34588889999999999999996 578899999997532 33456789999999999999999999999999999999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
|||++ |++.+++.
T Consensus 133 ~e~~~-g~l~~~l~ 145 (348)
T 1u5q_A 133 MEYCL-GSASDLLE 145 (348)
T ss_dssp EECCS-EEHHHHHH
T ss_pred EecCC-CCHHHHHH
Confidence 99998 68888774
No 304
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=118.58 Aligned_cols=89 Identities=17% Similarity=0.267 Sum_probs=71.8
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--------------------------HHHHHHHHHHHHHh
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--------------------------RAFRSFDSECEVLR 485 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--------------------------~~~~~~~~Ei~~l~ 485 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 35799999999999999999996 5688999999965321 11356889999999
Q ss_pred cCCCCCccceeEEEEc--CCcceEEEcccCCCCHHHHH
Q 040301 486 NVCHRNLIKILSSCSN--PDFKALMWGRLLNISITIIR 521 (524)
Q Consensus 486 ~l~H~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l 521 (524)
+++||||+++++++.+ .+..++||||+++|+|.+++
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 129 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP 129 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh
Confidence 9999999999999987 56789999999999887643
No 305
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.18 E-value=2.3e-11 Score=118.38 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=76.6
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+++..++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 3456799999999999999999996 578899999996543 2235678899999999999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||++ |+|.+++++
T Consensus 111 v~e~~~-~~L~~~~~~ 125 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDK 125 (329)
T ss_dssp EEECCS-EEHHHHHHH
T ss_pred EEecCC-CCHHHHHhh
Confidence 999998 599998864
No 306
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.18 E-value=3.5e-11 Score=118.61 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=87.9
Q ss_pred cccccchhhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-----CCCcc
Q 040301 420 TWRRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-----HRNLI 493 (524)
Q Consensus 420 ~~~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-----H~niv 493 (524)
....+++++.....++|...+.||+|+||.||+|+. .+++.||||.+.... ...+.+.+|+++++.+. ||||+
T Consensus 21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv 99 (360)
T 3llt_A 21 EIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIV 99 (360)
T ss_dssp GGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBC
T ss_pred cceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCee
Confidence 345667777777888999999999999999999997 578899999997533 34566788999999886 99999
Q ss_pred ceeEEEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 494 KILSSCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 494 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++++++...+..++||||+ +|+|.+++++
T Consensus 100 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~ 128 (360)
T 3llt_A 100 KYHGKFMYYDHMCLIFEPL-GPSLYEIITR 128 (360)
T ss_dssp CEEEEEEETTEEEEEECCC-CCBHHHHHHH
T ss_pred cccceeeECCeeEEEEcCC-CCCHHHHHHh
Confidence 9999999999999999999 8999999864
No 307
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.18 E-value=3.7e-11 Score=114.40 Aligned_cols=88 Identities=26% Similarity=0.348 Sum_probs=74.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch---HH----HHHHHHHHHHHhcCCCCCccceeEEEEcCCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE---RA----FRSFDSECEVLRNVCHRNLIKILSSCSNPDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~---~~----~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~ 504 (524)
.++|+..+.||+|+||.||+|+. .+++.||+|.+..... .. .+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 46788999999999999999997 5788999999964331 11 167899999999999999999999986554
Q ss_pred ceEEEcccCCCCHHHHHH
Q 040301 505 KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~ 522 (524)
++||||+++|+|.+++.
T Consensus 97 -~lv~e~~~~~~L~~~l~ 113 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLL 113 (287)
T ss_dssp -EEEEECCTTCBHHHHHH
T ss_pred -eEEEEecCCCCHHHHHh
Confidence 79999999999998874
No 308
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.17 E-value=2.6e-11 Score=114.90 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=77.1
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-CcceEE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-DFKALM 508 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-~~~~lv 508 (524)
....++|+..+.||+|+||.||+|.. +++.||||.++... ..+.+.+|++++++++||||+++++++.+. +..++|
T Consensus 17 ~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv 93 (278)
T 1byg_A 17 ALNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 93 (278)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred cCChhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence 34457899999999999999999987 47899999997543 456789999999999999999999997654 478999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 94 ~e~~~~~~L~~~l~~ 108 (278)
T 1byg_A 94 TEYMAKGSLVDYLRS 108 (278)
T ss_dssp ECCCTTEEHHHHHHH
T ss_pred EecCCCCCHHHHHHh
Confidence 999999999999864
No 309
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.17 E-value=4.4e-11 Score=116.44 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=78.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 45789999999999999999997 458999999986543 334567889999999999999999999999999999999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+++++|.+++.
T Consensus 104 e~~~~~~l~~~~~ 116 (331)
T 4aaa_A 104 EFVDHTILDDLEL 116 (331)
T ss_dssp ECCSEEHHHHHHH
T ss_pred ecCCcchHHHHHh
Confidence 9999999888754
No 310
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.16 E-value=4.5e-11 Score=115.37 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=73.9
Q ss_pred hhccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
..+.|+..+.||+|+||.||+|... +|+.||+|.+.... ..+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 4467999999999999999999974 58999999997543 34678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHH
Q 040301 511 RLLNISITIIRR 522 (524)
Q Consensus 511 ~~~~gsL~~~l~ 522 (524)
|+++|+|.++++
T Consensus 105 ~~~~~~L~~~~~ 116 (314)
T 3com_A 105 YCGAGSVSDIIR 116 (314)
T ss_dssp CCTTEEHHHHHH
T ss_pred cCCCCCHHHHHH
Confidence 999999999985
No 311
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.16 E-value=8.9e-12 Score=122.24 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=77.6
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHH-----------------HHHHHHHHHHHhcCCCCCccce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERA-----------------FRSFDSECEVLRNVCHRNLIKI 495 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~Ei~~l~~l~H~niv~l 495 (524)
.++|+..+.||+|+||.||+|.. +++.||||.+....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 88999999997543211 1789999999999999999999
Q ss_pred eEEEEcCCcceEEEcccCCCCHHHH
Q 040301 496 LSSCSNPDFKALMWGRLLNISITII 520 (524)
Q Consensus 496 ~~~~~~~~~~~lv~e~~~~gsL~~~ 520 (524)
++++.+.+..++||||+++|+|.++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~ 133 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKF 133 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHH
Confidence 9999999999999999999999877
No 312
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.16 E-value=3.7e-11 Score=115.91 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=74.0
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
++|+..+.||+|+||+||+|... +++.||||++.... .....++.+|+..+.++ +||||++++++|.+++..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57999999999999999999974 78999999986432 33445566677666655 9999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||+ +|+|.+++.+
T Consensus 137 e~~-~~~L~~~~~~ 149 (311)
T 3p1a_A 137 ELC-GPSLQQHCEA 149 (311)
T ss_dssp ECC-CCBHHHHHHH
T ss_pred ecc-CCCHHHHHHh
Confidence 999 6799988753
No 313
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.16 E-value=5.9e-11 Score=114.74 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=73.0
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEE-----------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCS----------- 500 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~----------- 500 (524)
.++|+..+.||+|+||.||+|... +++.||+|++........+++.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 357889999999999999999974 58899999998766666788999999999999999999999874
Q ss_pred ---cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 ---NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ---~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+....++||||++ |+|.+++++
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~ 114 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ 114 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT
T ss_pred cccccCceeEEeeccC-CCHHHHhhc
Confidence 3467899999998 699998853
No 314
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=126.83 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=73.7
Q ss_pred ccccccC-cccCCCCceEEEEEeC---CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 434 DEFNECN-LLGTGSFGSVYKGTIS---DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 434 ~~~~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
+++.... .||+|+||.||+|.+. ++..||||.++... ....++|.+|+++|++++|||||+++++|.. +..++|
T Consensus 335 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv 413 (613)
T 2ozo_A 335 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV 413 (613)
T ss_dssp TSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEE
T ss_pred cceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEE
Confidence 3444444 7999999999999863 45679999997643 3456789999999999999999999999976 569999
Q ss_pred EcccCCCCHHHHHH
Q 040301 509 WGRLLNISITIIRR 522 (524)
Q Consensus 509 ~e~~~~gsL~~~l~ 522 (524)
||||++|+|.++++
T Consensus 414 ~E~~~~g~L~~~l~ 427 (613)
T 2ozo_A 414 MEMAGGGPLHKFLV 427 (613)
T ss_dssp EECCTTCBHHHHHT
T ss_pred EEeCCCCcHHHHHh
Confidence 99999999999985
No 315
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.15 E-value=6.4e-11 Score=113.51 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=72.9
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhc--CCCCCccceeEEEEcC----Ccc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRN--VCHRNLIKILSSCSNP----DFK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~----~~~ 505 (524)
..++|+..+.||+|+||.||+|.. +++.||||++.... .+.+.+|.+++.. ++||||+++++++... ...
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~ 81 (301)
T 3q4u_A 6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD---EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL 81 (301)
T ss_dssp CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc---chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence 346899999999999999999998 67899999997543 3455667777665 7999999999997653 458
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 82 ~lv~e~~~~g~L~~~l~~ 99 (301)
T 3q4u_A 82 WLITHYHEMGSLYDYLQL 99 (301)
T ss_dssp EEEECCCTTCBHHHHHTT
T ss_pred EEehhhccCCCHHHHHhh
Confidence 999999999999999864
No 316
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.15 E-value=5.2e-11 Score=116.55 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=79.7
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCC--CCccceeEEEEcCCcceE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCH--RNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H--~niv~l~~~~~~~~~~~l 507 (524)
..+.|+..+.||+|+||.||++...+++.||||++.... ....+.+.+|++++++++| |||+++++++.+++..++
T Consensus 7 ~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp SSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred ecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 346799999999999999999998888999999997543 3456789999999999987 999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||| +.+|+|.+++++
T Consensus 87 v~e-~~~~~L~~~l~~ 101 (343)
T 3dbq_A 87 VME-CGNIDLNSWLKK 101 (343)
T ss_dssp EEC-CCSEEHHHHHHH
T ss_pred EEe-CCCCCHHHHHHh
Confidence 999 567899999864
No 317
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.15 E-value=5.3e-11 Score=114.87 Aligned_cols=98 Identities=22% Similarity=0.348 Sum_probs=77.6
Q ss_pred chhhhhhhhccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEE
Q 040301 425 SYLDIQRATDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSS 498 (524)
Q Consensus 425 ~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~ 498 (524)
.++++....++|...+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.++++++||||++++++
T Consensus 25 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 104 (313)
T 3brb_A 25 KLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGV 104 (313)
T ss_dssp CTTTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEE
T ss_pred hHHhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEE
Confidence 34556667788999999999999999999852 34579999997542 3456789999999999999999999999
Q ss_pred EEcCCc-----ceEEEcccCCCCHHHHHH
Q 040301 499 CSNPDF-----KALMWGRLLNISITIIRR 522 (524)
Q Consensus 499 ~~~~~~-----~~lv~e~~~~gsL~~~l~ 522 (524)
+.+.+. .++||||+++|+|.+++.
T Consensus 105 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~ 133 (313)
T 3brb_A 105 CIEMSSQGIPKPMVILPFMKYGDLHTYLL 133 (313)
T ss_dssp EEC-------CEEEEEECCTTCBHHHHHH
T ss_pred EeeccccCCcccEEEEecccCCCHHHHHH
Confidence 987653 499999999999999983
No 318
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.15 E-value=4.3e-11 Score=113.61 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=75.1
Q ss_pred hccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN---------- 501 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~---------- 501 (524)
..+|+..+.||+|+||.||+|... +++.||+|.+.... +.+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 357899999999999999999974 78999999997643 346689999999999999999999864
Q ss_pred ------CCcceEEEcccCCCCHHHHHHh
Q 040301 502 ------PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ------~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
....++||||+++|+|.+++++
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 113 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEK 113 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHH
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhh
Confidence 3458999999999999999853
No 319
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.14 E-value=2e-11 Score=122.86 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=74.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--------HHHHHHHHHHHHHhcCCCCCccceeEEEEcC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--------RAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 502 (524)
..++|...+.||+|+||.||+|.. .+++.||||.+..... .....+.+|++++++++||||+++++++..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~- 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence 456799999999999999999996 5688999999975321 122358899999999999999999999864
Q ss_pred CcceEEEcccCCCCHHHHHH
Q 040301 503 DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~ 522 (524)
+..++|||||++|+|.+++.
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~ 231 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVV 231 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTS
T ss_pred CceEEEEEcCCCCcHHHHHh
Confidence 55899999999999988764
No 320
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.14 E-value=2.9e-11 Score=119.40 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=78.3
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEE------eCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC---CCCccceeE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGT------ISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC---HRNLIKILS 497 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~------~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~ 497 (524)
.++....+.|...+.||+|+||.||+|. ..+++.||||++.... ..++.+|++++.+++ |+||+++++
T Consensus 58 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~ 134 (365)
T 3e7e_A 58 TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYS 134 (365)
T ss_dssp CEEECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEE
T ss_pred eeEEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhhe
Confidence 3445566789999999999999999994 3567889999997654 346777888877776 999999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHH
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++..++..++|||||++|+|.++++
T Consensus 135 ~~~~~~~~~lv~e~~~~g~L~~~l~ 159 (365)
T 3e7e_A 135 AHLFQNGSVLVGELYSYGTLLNAIN 159 (365)
T ss_dssp EEECSSCEEEEECCCCSCBHHHHHH
T ss_pred eeecCCCcEEEEeccCCCcHHHHHH
Confidence 9999999999999999999999996
No 321
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.14 E-value=3.9e-11 Score=118.37 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=82.5
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc-----------hHHHHHHHHHHHHHhcCCCCCc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL-----------ERAFRSFDSECEVLRNVCHRNL 492 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~-----------~~~~~~~~~Ei~~l~~l~H~ni 492 (524)
...+++....++|+..+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 34577788889999999999999999999998779999999995422 1224789999999999999999
Q ss_pred cceeEEEEcC-----CcceEEEcccCCCCHHHHHH
Q 040301 493 IKILSSCSNP-----DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 493 v~l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~ 522 (524)
+++++++... ...++||||++ |+|.+++.
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 125 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIH 125 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHH
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHH
Confidence 9999998543 35799999998 68888875
No 322
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.13 E-value=3.8e-11 Score=116.36 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=73.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~ 503 (524)
.++|...+.||+|+||.||+|.. .+++.||||.+.... ......+.+|++++++++||||+++++++..++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 45799999999999999999997 467889999996532 112345889999999999999999999997655
Q ss_pred cceEEEcccCCCCHHHHHH
Q 040301 504 FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~ 522 (524)
.++||||+++|+|.+++.
T Consensus 89 -~~lv~e~~~~~~L~~~~~ 106 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVV 106 (322)
T ss_dssp -EEEEEECCTTEETHHHHS
T ss_pred -eEEEEecCCCCcHHHHHh
Confidence 899999999999999875
No 323
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.13 E-value=6.8e-11 Score=113.17 Aligned_cols=91 Identities=21% Similarity=0.330 Sum_probs=75.6
Q ss_pred hccccccCcccCCCCceEEEEEeCC----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEE-cCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCS-NPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~-~~~~~~ 506 (524)
...|+..+.||+|+||.||+|...+ +..+|+|.+.... ....+.+.+|+.++++++||||+++++++. .++..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3568888999999999999999632 2358999987543 445678999999999999999999999865 456789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 104 ~v~e~~~~~~L~~~l~~ 120 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRN 120 (298)
T ss_dssp EEEECCTTCBHHHHHHC
T ss_pred EEEeCCCCCCHHHHHHh
Confidence 99999999999999864
No 324
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.13 E-value=2.9e-11 Score=117.92 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=78.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch--------HHHHHHHHHHHHHhcCCCCCccceeEEEEcC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE--------RAFRSFDSECEVLRNVCHRNLIKILSSCSNP 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~ 502 (524)
..++|+..+.||+|+||.||+|.. .+++.||||.+..... ...+.+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 346799999999999999999996 5688899999975431 1234577899999999999999999999999
Q ss_pred CcceEEEcccCCC-CHHHHHHh
Q 040301 503 DFKALMWGRLLNI-SITIIRRH 523 (524)
Q Consensus 503 ~~~~lv~e~~~~g-sL~~~l~~ 523 (524)
+..++||||+.+| +|.+++++
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~ 123 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDR 123 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHT
T ss_pred CEEEEEEEeCCCCccHHHHHHh
Confidence 9999999999877 99998864
No 325
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.13 E-value=4.8e-11 Score=118.00 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=74.8
Q ss_pred ccccccCcccCCCCceEEEEEe--CCC--CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEc-CCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI--SDW--TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSN-PDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~--~~~--~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~-~~~~~l 507 (524)
..|...+.||+|+||.||+|.. .++ ..+|||.+.... ....++|.+|+.++++++||||++++++|.. ++..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 3466778999999999999996 232 358999986533 4556789999999999999999999998765 457899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 169 v~e~~~~g~L~~~l~~ 184 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRN 184 (373)
T ss_dssp EEECCTTCBHHHHHHC
T ss_pred EEECCCCCCHHHHHhh
Confidence 9999999999999864
No 326
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.13 E-value=2.6e-11 Score=119.31 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=78.3
Q ss_pred hccccccCcccCCCCceEEEEEe----CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCC
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI----SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPD 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~ 503 (524)
.++|+..+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++.+ +||||+++++++..++
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36799999999999999999996 368899999986432 22345677899999999 6999999999999999
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~ 152 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQ 152 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHH
T ss_pred eEEEEeecCCCCCHHHHHHH
Confidence 99999999999999999863
No 327
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.13 E-value=9.9e-11 Score=111.04 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=77.2
Q ss_pred hhhccccccCcccCCCCceEEEEEeCC----CCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISD----WTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
...++|...+.||+|+||.||+|.... +..||+|.+.... ....+.+.+|++++++++||||+++++++.+ +..
T Consensus 9 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~ 87 (281)
T 3cc6_A 9 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPT 87 (281)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSC
T ss_pred ecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCC
Confidence 345789999999999999999998522 3459999997643 4456789999999999999999999999864 567
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 88 ~~v~e~~~~~~L~~~l~~ 105 (281)
T 3cc6_A 88 WIIMELYPYGELGHYLER 105 (281)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHh
Confidence 999999999999999853
No 328
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.12 E-value=7.1e-11 Score=113.10 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=75.1
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e 510 (524)
++|+..+.||+|+||.||+|+.. +++.||||.+.... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57888999999999999999974 68999999986543 2234678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|++ |+|.++++.
T Consensus 83 ~~~-~~L~~~~~~ 94 (299)
T 2r3i_A 83 FLH-QDLKKFMDA 94 (299)
T ss_dssp CCS-EEHHHHHHH
T ss_pred ccc-CCHHHHHHh
Confidence 998 699998853
No 329
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.12 E-value=1.1e-10 Score=111.74 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=74.7
Q ss_pred cccccCcccCCCCceEEEEEe-CCC---CEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc-eEE
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDW---TNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK-ALM 508 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~---~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~-~lv 508 (524)
.|...+.||+|+||.||+|.. .++ ..+|+|.+.... ....+.+.+|+.++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 355668999999999999985 222 369999997543 44567899999999999999999999999876665 999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+.+|+|.+++++
T Consensus 102 ~e~~~~~~L~~~~~~ 116 (298)
T 3pls_A 102 LPYMCHGDLLQFIRS 116 (298)
T ss_dssp ECCCTTCBHHHHHHC
T ss_pred EecccCCCHHHHHhc
Confidence 999999999999864
No 330
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.12 E-value=1.3e-10 Score=113.08 Aligned_cols=88 Identities=18% Similarity=0.337 Sum_probs=77.4
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEc--CCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSN--PDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~--~~~~~lv 508 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+.... .+.+.+|++++++++ ||||+++++++.. ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 36799999999999999999996 578899999997543 366889999999997 9999999999988 5678999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|||+++|+|.+++++
T Consensus 112 ~e~~~~~~l~~~~~~ 126 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT 126 (330)
T ss_dssp EECCCCCCHHHHGGG
T ss_pred EeccCchhHHHHHHh
Confidence 999999999998764
No 331
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.12 E-value=1.1e-10 Score=116.34 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=78.8
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCC--CCCccceeEEEEcCCcceEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVC--HRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~~~~~lv 508 (524)
.+.|+..+.||+|+||.||+|...+++.||||.+.... ....+.+.+|+.++++++ ||||+++++++..++..|+|
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 35699999999999999999998778999999996533 445678999999999996 59999999999999999999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
|| +.+|+|.+++++
T Consensus 135 ~E-~~~~~L~~~l~~ 148 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKK 148 (390)
T ss_dssp EE-CCSEEHHHHHHH
T ss_pred Ee-cCCCCHHHHHHh
Confidence 99 567899999864
No 332
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.11 E-value=1.3e-10 Score=113.46 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=77.3
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhc--CCCCCccceeEEEEcCC----c
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRN--VCHRNLIKILSSCSNPD----F 504 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~--l~H~niv~l~~~~~~~~----~ 504 (524)
...++|+..+.||+|+||.||+|.. +++.||||.+.... .+.+.+|++++.. ++||||+++++++...+ .
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~ 114 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 114 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchh---HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence 3456899999999999999999998 57899999996543 3567789998887 79999999999998876 7
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+++|+|.+++++
T Consensus 115 ~~lv~e~~~~g~L~~~l~~ 133 (342)
T 1b6c_B 115 LWLVSDYHEHGSLFDYLNR 133 (342)
T ss_dssp EEEEECCCTTCBHHHHHHH
T ss_pred eEEEEeecCCCcHHHHHhc
Confidence 8999999999999999864
No 333
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.11 E-value=1.4e-10 Score=111.45 Aligned_cols=90 Identities=28% Similarity=0.387 Sum_probs=76.1
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+...++|...+.||+|+||.||+|... ..+|+|.++... ....+.|.+|++++++++||||+++++++. .+..++
T Consensus 32 ~i~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~l 108 (307)
T 3lb7_A 32 EIEASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAI 108 (307)
T ss_dssp BCCTTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred EecccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEE
Confidence 344567899999999999999999863 368999886432 445678999999999999999999999875 566899
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++|+|.++++
T Consensus 109 v~e~~~~~~L~~~l~ 123 (307)
T 3lb7_A 109 VTQWCEGSSLYKHLH 123 (307)
T ss_dssp EEECCSSCBHHHHHH
T ss_pred EEecCCCCcHHHHHH
Confidence 999999999999985
No 334
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.11 E-value=6.2e-11 Score=115.31 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=76.6
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+..... .+.+.+|+++++++ +||||+++++++..++..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 36799999999999999999996 5788999999865432 24578999999999 99999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+ +|+|.++++.
T Consensus 86 ~~-~~~L~~~~~~ 97 (330)
T 2izr_A 86 LL-GPSLEDLFDL 97 (330)
T ss_dssp CC-CCBHHHHHHH
T ss_pred eC-CCCHHHHHHH
Confidence 99 8999999864
No 335
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.11 E-value=8.6e-11 Score=116.03 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=71.6
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
..+.|+..+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++...+
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 346799999999999999999997 578999999995432 344677899999999999999999999998763
Q ss_pred -cceEEEcccCCCCHHHHHHh
Q 040301 504 -FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l~~ 523 (524)
..|+||||+ +++|.+++++
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~ 122 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKH 122 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHH
T ss_pred ceEEEEEecC-CCCHHHHHhc
Confidence 459999999 7899998864
No 336
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=111.21 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=73.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc----hHHHHHHHHHHHHHhcCCCCCccceeEEEE--cCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL----ERAFRSFDSECEVLRNVCHRNLIKILSSCS--NPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~----~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~--~~~~~ 505 (524)
.++|...+.||+|+||.||+|.. .+++.+|+|.+.... ....+.+.+|++++++++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 36799999999999999999996 468899999997543 234578999999999999999999999985 34578
Q ss_pred eEEEcccCCCCHHHHHH
Q 040301 506 ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~ 522 (524)
++||||+++| +.+++.
T Consensus 84 ~lv~e~~~~~-l~~~~~ 99 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLD 99 (305)
T ss_dssp EEEEECCSEE-HHHHHH
T ss_pred EEEehhccCC-HHHHHH
Confidence 9999999976 777664
No 337
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=117.82 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=74.3
Q ss_pred ccccccCcccCCCCceEEEEEeC-CCCEEEEEEeeccch-HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcc
Q 040301 434 DEFNECNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE-RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGR 511 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 511 (524)
++|...+.||+|+||.||+|... +++.||+|++..... .....+.+|++++++++||||+++++++.+++..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 46889999999999999999974 788999999965432 1222456899999999999999999999999999999999
Q ss_pred cCCCCHHHHHHh
Q 040301 512 LLNISITIIRRH 523 (524)
Q Consensus 512 ~~~gsL~~~l~~ 523 (524)
++ |+|.+++.+
T Consensus 82 ~~-~~l~~~~~~ 92 (324)
T 3mtl_A 82 LD-KDLKQYLDD 92 (324)
T ss_dssp CS-EEHHHHHHH
T ss_pred cc-cCHHHHHHh
Confidence 98 599988754
No 338
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.11 E-value=1.1e-10 Score=114.09 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=77.8
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHH-HhcCCCCCccceeEEEEcCCcc
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEV-LRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~-l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.....++|+..+.||+|+||.||+|.. .+|+.||||++.... .....++..|+.+ ++.++||||+++++++..++..
T Consensus 46 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~ 125 (340)
T 3an0_A 46 FEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDV 125 (340)
T ss_dssp CCCCSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCE
T ss_pred eEEehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcE
Confidence 345567899999999999999999996 578899999997543 3344556666665 7888999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++ +|.+++++
T Consensus 126 ~lv~e~~~~-~L~~~l~~ 142 (340)
T 3an0_A 126 WICMELMDT-SLDKFYKQ 142 (340)
T ss_dssp EEEECCCSE-EHHHHHHH
T ss_pred EEEHHHhhC-cHHHHHHH
Confidence 999999985 99988763
No 339
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.11 E-value=8.6e-11 Score=114.17 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=70.8
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCE----EEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTN----VAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.++|+..+.||+|+||.||+|+. .+++. ||+|.+.... ....++|.+|+.++++++||||++++++|.++. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 35688999999999999999996 34443 5888875433 344678999999999999999999999998754 78
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|+||+++|+|.+++++
T Consensus 93 ~v~e~~~~g~L~~~l~~ 109 (327)
T 3poz_A 93 LITQLMPFGCLLDYVRE 109 (327)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEEecCCCcHHHHHHh
Confidence 99999999999999864
No 340
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.10 E-value=1.9e-10 Score=112.07 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC--CCCCccceeEEEEcC----C
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV--CHRNLIKILSSCSNP----D 503 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l--~H~niv~l~~~~~~~----~ 503 (524)
....++|+..+.||+|+||.||+|+.. ++.||||++.... ...+.+|.+++... +||||+++++++... .
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 108 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT 108 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence 344578999999999999999999975 7899999996543 23445566666554 999999999999887 6
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..++||||+++|+|.+++++
T Consensus 109 ~~~lv~e~~~~g~L~~~l~~ 128 (337)
T 3mdy_A 109 QLYLITDYHENGSLYDYLKS 128 (337)
T ss_dssp EEEEEECCCTTCBHHHHHHH
T ss_pred ceEEEEeccCCCcHHHHhhc
Confidence 78999999999999999864
No 341
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.10 E-value=1.2e-10 Score=110.90 Aligned_cols=90 Identities=24% Similarity=0.379 Sum_probs=76.3
Q ss_pred hhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
+...++|+..+.||+|+||.||+|... ..+|+|.+.... ....+.|.+|++++++++||||+++++++ ..+..++
T Consensus 20 ei~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~l 96 (289)
T 3og7_A 20 EIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAI 96 (289)
T ss_dssp BCCTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEE
T ss_pred ccCccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEE
Confidence 344567999999999999999999863 359999996433 45567899999999999999999999965 5667899
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++|+|.++++
T Consensus 97 v~e~~~~~~L~~~l~ 111 (289)
T 3og7_A 97 VTQWCEGSSLYHHLH 111 (289)
T ss_dssp EEECCCEEEHHHHHT
T ss_pred EEEecCCCcHHHHHh
Confidence 999999999999885
No 342
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.10 E-value=1.6e-10 Score=110.07 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=73.8
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.++...++.++||||+++++++.+++..++
T Consensus 4 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~l 83 (290)
T 3fme_A 4 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 83 (290)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEE
T ss_pred ccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEE
Confidence 3457899999999999999999996 578899999997543 2223344455556888999999999999999999999
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||++ |+|.+++++
T Consensus 84 v~e~~~-~~l~~~l~~ 98 (290)
T 3fme_A 84 CMELMD-TSLDKFYKQ 98 (290)
T ss_dssp EEECCS-EEHHHHHHH
T ss_pred EEehhc-cchHHHHHH
Confidence 999998 598888753
No 343
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.09 E-value=1.3e-10 Score=118.40 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=68.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-----Cc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-----DF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~~ 504 (524)
.++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++|||||++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 46799999999999999999996 478999999996532 34567899999999999999999999999543 56
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.|+||||+. |+|.+++++
T Consensus 132 ~~lv~e~~~-~~L~~~~~~ 149 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRT 149 (458)
T ss_dssp EEEEECCCS-EEHHHHHHS
T ss_pred EEEEEeccc-cchhhhccc
Confidence 899999985 799998864
No 344
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.09 E-value=1e-10 Score=112.77 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=85.0
Q ss_pred cccchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCC--CCCccceeE
Q 040301 422 RRTSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVC--HRNLIKILS 497 (524)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~--H~niv~l~~ 497 (524)
+.+.++.+....++|+..+.||+|+||.||++...+++.||||.+.... ....+.+.+|++++++++ ||||+++++
T Consensus 16 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~ 95 (313)
T 3cek_A 16 ENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 95 (313)
T ss_dssp ----CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEE
T ss_pred CCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEE
Confidence 4456677777788899999999999999999998788999999996432 445678999999999997 599999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++..++||| +.+|+|.+++++
T Consensus 96 ~~~~~~~~~lv~e-~~~~~L~~~l~~ 120 (313)
T 3cek_A 96 YEITDQYIYMVME-CGNIDLNSWLKK 120 (313)
T ss_dssp EEECSSEEEEEEC-CCSEEHHHHHHH
T ss_pred EeecCCEEEEEEe-cCCCcHHHHHHh
Confidence 9999999999999 567899999864
No 345
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.09 E-value=1.3e-10 Score=122.79 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=71.0
Q ss_pred CcccCCCCceEEEEEe---CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEEEcccCC
Q 040301 440 NLLGTGSFGSVYKGTI---SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
+.||+|+||.||+|.+ ..++.||||+++... ....++|.+|++++++++|||||+++++|.. +..++|||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 4799999999999975 345789999997543 3346789999999999999999999999964 568999999999
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 454 g~L~~~l~~ 462 (635)
T 4fl3_A 454 GPLNKYLQQ 462 (635)
T ss_dssp EEHHHHHHH
T ss_pred CCHHHHHhh
Confidence 999999864
No 346
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.09 E-value=2e-10 Score=114.43 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=70.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCC--cc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPD--FK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~--~~ 505 (524)
..++|+..+.||+|+||.||+|.. .+++.||||++... .....+.+.+|+.+++++. ||||+++++++..++ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 456799999999999999999996 57899999999543 2445677889999999997 999999999998654 68
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
|+|||||+ |+|.++++.
T Consensus 87 ~lv~e~~~-~~L~~~~~~ 103 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRA 103 (388)
T ss_dssp EEEEECCS-EEHHHHHHH
T ss_pred EEEecccC-cCHHHHHHc
Confidence 99999998 699988863
No 347
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.09 E-value=9.9e-11 Score=114.05 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEc---
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSN--- 501 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~--- 501 (524)
+.+.....+|+..+.||+|+||.||+|.. .+++.||||++........+.+.+|+.++.++. ||||+++++++..
T Consensus 21 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~ 100 (337)
T 3ll6_A 21 QTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKE 100 (337)
T ss_dssp CEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTT
T ss_pred ceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhcccccccccc
Confidence 44445556899999999999999999996 478999999997666566778999999999996 9999999999953
Q ss_pred -----CCcceEEEcccCCCCHHHHHHh
Q 040301 502 -----PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 -----~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
....++||||+. |+|.+++++
T Consensus 101 ~~~~~~~~~~lv~e~~~-g~L~~~l~~ 126 (337)
T 3ll6_A 101 ESDTGQAEFLLLTELCK-GQLVEFLKK 126 (337)
T ss_dssp TSTTSSEEEEEEEECCS-EEHHHHHHH
T ss_pred ccccCCceEEEEEEecC-CCHHHHHHH
Confidence 344799999997 799998864
No 348
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.09 E-value=1.9e-10 Score=122.10 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=79.6
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
.+.....++|+..+.||+|+||.||+|.+. .+..||+|.+.... ....+.|.+|+.++++++||||+++++++.
T Consensus 383 ~~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~- 461 (656)
T 2j0j_A 383 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT- 461 (656)
T ss_dssp GGTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred cccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-
Confidence 344455677888999999999999999963 24569999986533 445678999999999999999999999984
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++||||+++|+|.++++.
T Consensus 462 ~~~~~lv~E~~~~g~L~~~l~~ 483 (656)
T 2j0j_A 462 ENPVWIIMELCTLGELRSFLQV 483 (656)
T ss_dssp SSSCEEEEECCTTCBHHHHHHH
T ss_pred cCceEEEEEcCCCCcHHHHHHh
Confidence 5679999999999999999863
No 349
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.09 E-value=8.2e-11 Score=117.00 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=70.7
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------ 502 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------ 502 (524)
....++|+..+.||+|+||.||+|.. .+++.||||++..... ...+|+++++.++|||||++++++...
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 44567899999999999999999996 5789999999965432 223799999999999999999998543
Q ss_pred --------------------------------CcceEEEcccCCCCHHHHHHh
Q 040301 503 --------------------------------DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 --------------------------------~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...++|||||+ |+|.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~ 130 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKS 130 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHH
Confidence 34889999998 588887753
No 350
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.09 E-value=1.2e-10 Score=117.59 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=78.3
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-----C
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-----D 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~ 503 (524)
..++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++... .
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 346899999999999999999996 467889999997532 34567899999999999999999999999876 5
Q ss_pred cceEEEcccCCCCHHHHHHh
Q 040301 504 FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~~ 523 (524)
..|+||||++ |+|.+++++
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~ 122 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKT 122 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHS
T ss_pred eEEEEEecCC-cCHHHHHhc
Confidence 6899999997 599998864
No 351
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.07 E-value=9.8e-11 Score=114.72 Aligned_cols=91 Identities=23% Similarity=0.377 Sum_probs=72.0
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-----HHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
..++|+..+.||+|+||.||+|.. .+|+.||||.+..... ...+.+.+|++++++++||||+++++++...+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 456799999999999999999997 4689999999965331 1134688999999999999999999999999999
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++ +|.+++++
T Consensus 88 ~lv~e~~~~-~l~~~~~~ 104 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKD 104 (346)
T ss_dssp EEEEECCSE-EHHHHHTT
T ss_pred EEEEEcCCC-CHHHHHHh
Confidence 999999985 88888753
No 352
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.07 E-value=8.4e-11 Score=114.23 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=83.3
Q ss_pred ccchhhhhhhhcccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC-CCCCccceeE
Q 040301 423 RTSYLDIQRATDEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV-CHRNLIKILS 497 (524)
Q Consensus 423 ~~~~~~l~~~~~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l-~H~niv~l~~ 497 (524)
.+.++....-.+.|... +.||+|+||.||+|.. .+++.||+|.+.... ......+.+|+.++..+ .||||+++++
T Consensus 17 n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~ 96 (327)
T 3lm5_A 17 NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96 (327)
T ss_dssp CCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEE
T ss_pred hhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 34455556666677776 7899999999999997 468999999997543 23357889999999999 5699999999
Q ss_pred EEEcCCcceEEEcccCCCCHHHHHH
Q 040301 498 SCSNPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 498 ~~~~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
++.+.+..++||||+++|+|.+++.
T Consensus 97 ~~~~~~~~~lv~e~~~~~~L~~~~~ 121 (327)
T 3lm5_A 97 VYENTSEIILILEYAAGGEIFSLCL 121 (327)
T ss_dssp EEECSSEEEEEEECCTTEEGGGGGS
T ss_pred EEEeCCeEEEEEEecCCCcHHHHHH
Confidence 9999999999999999999988763
No 353
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.07 E-value=1.8e-10 Score=109.83 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=69.3
Q ss_pred hccccccCcccCCCCceEEEEEe--CCCC--EEEEEEeeccc---hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI--SDWT--NVAIKIFNLQL---ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~--~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.++|+..+.||+|+||.||+|.+ .+++ .||||.+.... ....+.+.+|++++++++||||+++++++..+. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 46799999999999999999985 2333 58999986542 345678999999999999999999999998755 8
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++||||+++|+|.+++++
T Consensus 96 ~~v~e~~~~~~L~~~l~~ 113 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRK 113 (291)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred eeeEecccCCCHHHHHHh
Confidence 999999999999999863
No 354
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.07 E-value=1.8e-10 Score=117.24 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=75.1
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC-----
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD----- 503 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~----- 503 (524)
..++|+..+.||+|+||.||+|.. .+++.||||++... .....+.+.+|+.+++.++|||||++++++....
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 356799999999999999999996 46889999999754 2345678899999999999999999999997654
Q ss_pred -cceEEEcccCCCCHHHHHH
Q 040301 504 -FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 -~~~lv~e~~~~gsL~~~l~ 522 (524)
..|+|||||++ ++.+.++
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~ 158 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQ 158 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHT
T ss_pred CeEEEEEeCCCC-CHHHHHh
Confidence 46999999986 5666553
No 355
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.06 E-value=1.9e-10 Score=122.53 Aligned_cols=92 Identities=20% Similarity=0.128 Sum_probs=79.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcce
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~ 506 (524)
..++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|..++..+ +||+|+++++++.+.+.+|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 346799999999999999999997 468889999997542 23356688899999987 7999999999999999999
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 419 lV~E~~~gg~L~~~l~~ 435 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQ 435 (674)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEeCcCCCcHHHHHHh
Confidence 99999999999999864
No 356
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.06 E-value=2.7e-08 Score=98.51 Aligned_cols=284 Identities=10% Similarity=0.056 Sum_probs=160.1
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
++|+.+.+.. .++......|.++.+|+.++|..+ ++.+.. .+|.+. +|+.+.+-.+ +..+....|..
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~--------~aF~~c-~l~~i~~~~~-l~~I~~~aF~~- 112 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGD--------GAFADT-KLQSYTGMER-VKKFGDYVFQG- 112 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECT--------TTTTTC-CCCEEEECTT-CCEECTTTTTT-
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEech--------hhhcCC-CCceEECCce-eeEeccceecc-
Confidence 4566666653 455455566667777777777543 555543 555554 4666655432 33333334433
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccc------------cCCc
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEG------------SIPY 167 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~------------~~~~ 167 (524)
. +|+.+.+..+.. ......|.+. .|+.+.+.. .+..+...+|..+.+++.+.+..+.... ....
T Consensus 113 ~-~L~~i~lp~~~~-~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 T-DLDDFEFPGATT-EIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp C-CCSEEECCTTCC-EECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred C-CcccccCCCccc-cccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceec
Confidence 2 566666654422 2233334333 455554433 2333445556666666666554433221 1111
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCC
Q 040301 168 DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247 (524)
Q Consensus 168 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 247 (524)
.+.....+..+.+..... ......+....+|+.+.+..+ +.......+..+..|+.+.+..+ +...-...|..+.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 233334444444433221 133344555667777776544 33344566777777888877665 444445567777788
Q ss_pred CEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccC
Q 040301 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASH 325 (524)
Q Consensus 248 ~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~ 325 (524)
+.+.+..+ +.... ..+..+.+|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|..+.+|+.+.+..
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 88877544 43333 56777788888888877777666677788888888888654 5545556777777787776654
No 357
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.06 E-value=4.2e-11 Score=118.83 Aligned_cols=92 Identities=11% Similarity=0.194 Sum_probs=74.5
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc---chHHHHHHHHHH---HHHhcCCCCCcccee-------
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ---LERAFRSFDSEC---EVLRNVCHRNLIKIL------- 496 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~Ei---~~l~~l~H~niv~l~------- 496 (524)
...++|+..+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+ +.+++++|||||+++
T Consensus 70 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~ 149 (377)
T 3byv_A 70 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF 149 (377)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCS
T ss_pred CCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhh
Confidence 3457899999999999999999996 56899999999743 234567899999 556666899999998
Q ss_pred EEEEcCC-----------------cceEEEcccCCCCHHHHHHh
Q 040301 497 SSCSNPD-----------------FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 497 ~~~~~~~-----------------~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++..++ ..|+||||+ +|+|.+++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~ 192 (377)
T 3byv_A 150 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEV 192 (377)
T ss_dssp EEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHH
T ss_pred hhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHh
Confidence 6666553 278999999 6899999864
No 358
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.05 E-value=5.7e-12 Score=123.02 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=70.4
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcCC---------CCCccce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNVC---------HRNLIKI 495 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l~---------H~niv~l 495 (524)
.++|+..+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|+.++++++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46789999999999999999998 67899999997542 123467889999988885 7777777
Q ss_pred eEEEE------------------------------cCCcceEEEcccCCCCHHHHH
Q 040301 496 LSSCS------------------------------NPDFKALMWGRLLNISITIIR 521 (524)
Q Consensus 496 ~~~~~------------------------------~~~~~~lv~e~~~~gsL~~~l 521 (524)
.+.+. .++..|+|||||++|++.+.+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~ 153 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQM 153 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGG
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHH
Confidence 77643 267899999999999765554
No 359
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=7.6e-11 Score=126.23 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=75.2
Q ss_pred hccccccCcccCCCCceEEEEEeC--CCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc-----
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS--DWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF----- 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----- 504 (524)
.++|+..+.||+|+||.||+|... +++.||||.+.... ......+.+|++++++++|||||++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 367999999999999999999974 57899999986433 3456678999999999999999999999987665
Q ss_pred ceEEEcccCCCCHHHHHH
Q 040301 505 KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~ 522 (524)
.|+||||+++|+|.++++
T Consensus 159 ~~lv~E~~~g~~L~~~~~ 176 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKG 176 (681)
T ss_dssp EEEEEECCCCEECC----
T ss_pred eEEEEEeCCCCcHHHHHh
Confidence 699999999999988764
No 360
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.05 E-value=5.7e-11 Score=124.36 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=76.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc-chHHHHHHHHHHHHHhcCCCCCccceeEEEEc------CCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ-LERAFRSFDSECEVLRNVCHRNLIKILSSCSN------PDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~------~~~ 504 (524)
.++|+..+.||+|+||.||+|.. .+|+.||||.+... .....+.+.+|++++++++||||+++++++.. ++.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 36799999999999999999996 56889999998654 34456789999999999999999999998765 667
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|||||++|+|.+++++
T Consensus 93 ~~LVmEy~~ggsL~~~L~~ 111 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQ 111 (676)
T ss_dssp CCCEEECCSSCBHHHHHHS
T ss_pred EEEEEEeCCCCCHHHHHHh
Confidence 8999999999999999864
No 361
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.04 E-value=3.6e-10 Score=111.77 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=76.0
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCC------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPD------ 503 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~------ 503 (524)
.++|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 46799999999999999999996 468889999997532 345677889999999999999999999998765
Q ss_pred cceEEEcccCCCCHHHHHH
Q 040301 504 FKALMWGRLLNISITIIRR 522 (524)
Q Consensus 504 ~~~lv~e~~~~gsL~~~l~ 522 (524)
..++||||++ |+|.++++
T Consensus 104 ~~~lv~e~~~-~~l~~~~~ 121 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQ 121 (371)
T ss_dssp EEEEEEECCS-EEHHHHHH
T ss_pred ceEEEEEcCC-CCHHHHHh
Confidence 6799999998 47888775
No 362
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.04 E-value=3.2e-10 Score=111.36 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=77.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-----Cc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP-----DF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~-----~~ 504 (524)
..++|+..+.||+|+||.||+|.. .+|+.||||.+.... ......+.+|++++++++||||+++++++..+ ..
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 88 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE 88 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence 346899999999999999999997 468899999996543 34466788999999999999999999998764 67
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||++ |+|.+++++
T Consensus 89 ~~lv~e~~~-~~L~~~~~~ 106 (353)
T 2b9h_A 89 VYIIQELMQ-TDLHRVIST 106 (353)
T ss_dssp EEEEECCCS-EEHHHHHHH
T ss_pred EEEEEeccC-ccHHHHHhh
Confidence 899999998 699988753
No 363
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.04 E-value=3.5e-11 Score=116.45 Aligned_cols=98 Identities=21% Similarity=0.431 Sum_probs=82.9
Q ss_pred cchhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 424 TSYLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
...+++....++|+..+.||+|+||.||+|...+ .+|+|.+.... ....+.+.+|+.++++++||||+++++++.+
T Consensus 23 ~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~ 100 (319)
T 2y4i_B 23 IFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS 100 (319)
T ss_dssp CCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC
T ss_pred cccccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec
Confidence 3456666777889999999999999999999743 48999986432 2234567789999999999999999999999
Q ss_pred CCcceEEEcccCCCCHHHHHHh
Q 040301 502 PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 502 ~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..++||||+++|+|.+++++
T Consensus 101 ~~~~~iv~e~~~~~~L~~~l~~ 122 (319)
T 2y4i_B 101 PPHLAIITSLCKGRTLYSVVRD 122 (319)
T ss_dssp SSCEEEECBCCCSEEHHHHTTS
T ss_pred CCceEEEeecccCCcHHHHHHh
Confidence 9999999999999999999864
No 364
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.04 E-value=2.3e-10 Score=114.31 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=70.4
Q ss_pred cccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHh-cCCCCCccceeEEEEc----CCcce
Q 040301 434 DEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLR-NVCHRNLIKILSSCSN----PDFKA 506 (524)
Q Consensus 434 ~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~-~l~H~niv~l~~~~~~----~~~~~ 506 (524)
++|... +.||+|+||.||+|.. .+++.||||+++.. ..+.+|++++. ..+||||+++++++.. ....|
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456665 6899999999999996 46889999999643 34667888874 4589999999999875 56789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|||||++|+|.+++++
T Consensus 136 lv~E~~~gg~L~~~l~~ 152 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQD 152 (400)
T ss_dssp EEEECCCSEEHHHHHHC
T ss_pred EEEEeCCCCcHHHHHHH
Confidence 99999999999999864
No 365
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.04 E-value=2.5e-10 Score=112.59 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=79.2
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC---
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP--- 502 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~--- 502 (524)
+.......|+..+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++...
T Consensus 21 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 100 (364)
T 3qyz_A 21 QVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIE 100 (364)
T ss_dssp CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTT
T ss_pred EeccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCcc
Confidence 3334556899999999999999999996 467889999997533 34457889999999999999999999999765
Q ss_pred --CcceEEEcccCCCCHHHHHHh
Q 040301 503 --DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 --~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...++||||++ |+|.+++++
T Consensus 101 ~~~~~~iv~e~~~-~~L~~~l~~ 122 (364)
T 3qyz_A 101 QMKDVYIVQDLME-TDLYKLLKT 122 (364)
T ss_dssp TCCCEEEEEECCS-EEHHHHHHH
T ss_pred ccceEEEEEcccC-cCHHHHHHh
Confidence 36899999998 599988764
No 366
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.04 E-value=6e-10 Score=108.15 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=75.2
Q ss_pred hhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hHHHHHHHHHHH-HHhcCCCCCccceeEEEEcCCcceE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ERAFRSFDSECE-VLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~Ei~-~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
...++|+..+.||+|+||.||+|.. .+++.||||.+.... .....++.+|+. +++.++||||+++++++..++..++
T Consensus 19 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 19 FTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp CCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred cCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence 3457899999999999999999997 468899999997643 334456666766 6778899999999999999999999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||+++ +|.++++
T Consensus 99 v~e~~~~-~l~~~~~ 112 (327)
T 3aln_A 99 CMELMST-SFDKFYK 112 (327)
T ss_dssp EECCCSE-EHHHHHH
T ss_pred EEeecCC-ChHHHHH
Confidence 9999985 8888775
No 367
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.04 E-value=2.9e-10 Score=108.86 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=71.9
Q ss_pred cccccc-CcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHH-hcCCCCCccceeEEEEc----CCcce
Q 040301 434 DEFNEC-NLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVL-RNVCHRNLIKILSSCSN----PDFKA 506 (524)
Q Consensus 434 ~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l-~~l~H~niv~l~~~~~~----~~~~~ 506 (524)
++|... +.||+|+||.||+|.. .+++.||+|.++.. ..+.+|++++ +..+||||+++++++.. ....+
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 91 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 91 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence 456666 6799999999999996 57889999999643 3466788887 66699999999999987 66789
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+||||+++|+|.+++++
T Consensus 92 lv~e~~~~~~L~~~l~~ 108 (299)
T 3m2w_A 92 IVMECLDGGELFSRIQD 108 (299)
T ss_dssp EEECCCCSCBHHHHHHH
T ss_pred EEEeecCCCcHHHHHHh
Confidence 99999999999999864
No 368
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.04 E-value=7.9e-11 Score=114.32 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=72.7
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCE----EEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceE
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTN----VAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKAL 507 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~l 507 (524)
++|+..+.||+|+||.||+|.. .+++. ||+|.+.... ....+.+.+|+.+++.++||||+++++++. ++..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 5688899999999999999996 34443 7888775432 223356778999999999999999999986 567899
Q ss_pred EEcccCCCCHHHHHHh
Q 040301 508 MWGRLLNISITIIRRH 523 (524)
Q Consensus 508 v~e~~~~gsL~~~l~~ 523 (524)
||||+++|+|.+++++
T Consensus 92 v~e~~~~~~L~~~l~~ 107 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQ 107 (325)
T ss_dssp EEECCTTCBSHHHHHS
T ss_pred EEEeCCCCCHHHHHHH
Confidence 9999999999999864
No 369
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.02 E-value=3.5e-10 Score=111.00 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=75.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcC-------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------- 502 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------- 502 (524)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ......+.+|+++++.++||||+++++++...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 46799999999999999999997 578999999985433 22345788999999999999999999999874
Q ss_pred -CcceEEEcccCCCCHHHHHHh
Q 040301 503 -DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 -~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+..++||||+++ ++.+.+.+
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~ 116 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSN 116 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHC
T ss_pred CceEEEEEeccCC-CHHHHHhh
Confidence 468999999985 77777643
No 370
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.01 E-value=3.2e-10 Score=110.04 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=74.7
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCE----EEEEEeeccc-hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTN----VAIKIFNLQL-ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~ 506 (524)
.++|+..+.||+|+||.||+|.. .+++. ||+|.+.... ....+.+.+|+.++++++||||+++++++..+. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 35799999999999999999996 34443 5777775432 345678999999999999999999999998764 88
Q ss_pred EEEcccCCCCHHHHHHh
Q 040301 507 LMWGRLLNISITIIRRH 523 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~~ 523 (524)
+|+||+++|+|.+++++
T Consensus 93 ~v~~~~~~g~L~~~l~~ 109 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVRE 109 (327)
T ss_dssp EEECCCSSCBHHHHHHH
T ss_pred EEEEecCCCcHHHHHHh
Confidence 99999999999999864
No 371
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=98.99 E-value=5.9e-10 Score=112.63 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=71.6
Q ss_pred ccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEcccCC
Q 040301 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
|...+.||+|+||+||.+...+|+.||||++.... .+.+.+|+++++++ +|||||++++++.+++..++|||||.
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~- 92 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN- 92 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-
T ss_pred eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-
Confidence 44467899999999987666689999999987543 34578899999876 89999999999999999999999996
Q ss_pred CCHHHHHHh
Q 040301 515 ISITIIRRH 523 (524)
Q Consensus 515 gsL~~~l~~ 523 (524)
|+|.+++++
T Consensus 93 gsL~~~l~~ 101 (434)
T 2rio_A 93 LNLQDLVES 101 (434)
T ss_dssp EEHHHHHHT
T ss_pred CCHHHHHhc
Confidence 699999864
No 372
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.99 E-value=2.9e-10 Score=112.21 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=69.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeecc--chHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQ--LERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------ 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------ 502 (524)
..++|+..+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++...
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 457899999999999999999996 56889999999653 234567888999999999999999999999764
Q ss_pred CcceEEEcccCCCCHHHHHH
Q 040301 503 DFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~~~l~ 522 (524)
...|+|+||+ +++|.++++
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~ 125 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVK 125 (367)
T ss_dssp CCCEEEEECC-CEECC----
T ss_pred CeEEEEeccc-CCCHHHHHh
Confidence 5679999999 689888775
No 373
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.99 E-value=5.3e-10 Score=107.53 Aligned_cols=91 Identities=21% Similarity=0.322 Sum_probs=71.7
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch-----HHHHHHHHHHHHHhcC---CCCCccceeEEEEcC
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE-----RAFRSFDSECEVLRNV---CHRNLIKILSSCSNP 502 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~~~ 502 (524)
..++|+..+.||+|+||.||+|+. .+++.||||.+..... .....+.+|+.+++++ +||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 356899999999999999999996 5789999999964321 1134566788777666 499999999999876
Q ss_pred C-----cceEEEcccCCCCHHHHHHh
Q 040301 503 D-----FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 503 ~-----~~~lv~e~~~~gsL~~~l~~ 523 (524)
. ..++||||++ |+|.+++++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~ 111 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDK 111 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHT
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhh
Confidence 5 4799999998 699999864
No 374
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=98.99 E-value=1.2e-10 Score=112.22 Aligned_cols=96 Identities=25% Similarity=0.293 Sum_probs=70.2
Q ss_pred hhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcC----CCCCcccee
Q 040301 428 DIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNV----CHRNLIKIL 496 (524)
Q Consensus 428 ~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l----~H~niv~l~ 496 (524)
+.....++|+..+.||+|+||.||+|.. .+++.||||.+..... .....+.+|+.++.++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 3344567899999999999999999996 5688999999965431 1233466799999888 899999999
Q ss_pred EEEEcCCcceEEEcc-cCCCCHHHHHHh
Q 040301 497 SSCSNPDFKALMWGR-LLNISITIIRRH 523 (524)
Q Consensus 497 ~~~~~~~~~~lv~e~-~~~gsL~~~l~~ 523 (524)
+++...+..++|||| +++|+|.+++++
T Consensus 105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~ 132 (312)
T 2iwi_A 105 DWFETQEGFMLVLERPLPAQDLFDYITE 132 (312)
T ss_dssp EEC-----CEEEEECCSSEEEHHHHHHH
T ss_pred EEEecCCeEEEEEEecCCCCCHHHHHHh
Confidence 999999999999999 899999999863
No 375
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.99 E-value=4.8e-10 Score=110.86 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=76.6
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc---
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK--- 505 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~--- 505 (524)
..+.|...+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus 40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 346799999999999999999996 468899999997532 34467889999999999999999999999887655
Q ss_pred ---eEEEcccCCCCHHHHHH
Q 040301 506 ---ALMWGRLLNISITIIRR 522 (524)
Q Consensus 506 ---~lv~e~~~~gsL~~~l~ 522 (524)
++||||++ |+|.+++.
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~ 138 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMG 138 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTT
T ss_pred eeEEEEEcccc-ccHHHHhh
Confidence 99999998 68887654
No 376
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=98.99 E-value=5.1e-10 Score=106.99 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=77.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+.... ..+.+.+|+++++.+ +|++++++++++..+...++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 45799999999999999999996 578899999986543 234577899999999 89999999999999999999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+ +|+|.+++++
T Consensus 87 ~~-~~~L~~~l~~ 98 (298)
T 1csn_A 87 LL-GPSLEDLLDL 98 (298)
T ss_dssp CC-CCBHHHHHHH
T ss_pred ec-CCCHHHHHHH
Confidence 99 9999999874
No 377
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=98.99 E-value=2.1e-10 Score=111.29 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=74.8
Q ss_pred hhhhccccccCcccCCCCceEEEEEe--CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcC---CCCCccceeEEEE--
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI--SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNV---CHRNLIKILSSCS-- 500 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l---~H~niv~l~~~~~-- 500 (524)
..+.++|+..+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+.+++.+ +||||+++++++.
T Consensus 7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~ 86 (326)
T 1blx_A 7 CRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86 (326)
T ss_dssp CCGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred cCchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence 34567899999999999999999997 467889999996533 11223566788777665 8999999999997
Q ss_pred ---cCCcceEEEcccCCCCHHHHHHh
Q 040301 501 ---NPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ---~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
.....++||||++ |+|.+++++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~l~~ 111 (326)
T 1blx_A 87 RTDRETKLTLVFEHVD-QDLTTYLDK 111 (326)
T ss_dssp ECSSEEEEEEEEECCS-CBHHHHHHH
T ss_pred ccCCCceEEEEEecCC-CCHHHHHHh
Confidence 4567899999998 699999864
No 378
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=98.98 E-value=4.4e-10 Score=109.51 Aligned_cols=88 Identities=24% Similarity=0.332 Sum_probs=69.5
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHH--HhcCCCCCccceeEEEEc-----CCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEV--LRNVCHRNLIKILSSCSN-----PDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~--l~~l~H~niv~l~~~~~~-----~~~ 504 (524)
..++|+..+.||+|+||.||+|.. +++.||||++..... +.+..|.++ +..++||||+++++++.. ...
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 346789999999999999999987 678999999975432 334445444 556899999999986543 235
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++|||||++|+|.+++++
T Consensus 87 ~~lv~e~~~~g~L~~~l~~ 105 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSL 105 (336)
T ss_dssp EEEEECCCTTCBHHHHHHH
T ss_pred EEEEEecCCCCcHHHHHhh
Confidence 7899999999999999864
No 379
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.97 E-value=6.7e-10 Score=109.54 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=71.8
Q ss_pred hhccccccCcccCCCCceEEEEEeCC------CCEEEEEEeeccchHH-----------HHHHHHHHHHHhcCCCCCccc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISD------WTNVAIKIFNLQLERA-----------FRSFDSECEVLRNVCHRNLIK 494 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~Ei~~l~~l~H~niv~ 494 (524)
..++|+..+.||+|+||.||+|.... ++.||||.+....... ...+.+|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 45689999999999999999999743 4679999987543211 123456677788899999999
Q ss_pred eeEEEEcC----CcceEEEcccCCCCHHHHHHh
Q 040301 495 ILSSCSNP----DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++++... ...++||||| +|+|.+++++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~ 144 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEA 144 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHH
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHh
Confidence 99999775 4589999999 9999999864
No 380
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.95 E-value=5.1e-10 Score=109.53 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=68.9
Q ss_pred hccccccCcccCCCCceEEEEEeC----CCCEEEEEEeeccchH-----------HHHHHHHHHHHHhcCCCCCccceeE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS----DWTNVAIKIFNLQLER-----------AFRSFDSECEVLRNVCHRNLIKILS 497 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~Ei~~l~~l~H~niv~l~~ 497 (524)
.++|...+.||+|+||.||+|... ++..+|+|.+...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367999999999999999999974 5678999999754311 1234778899999999999999999
Q ss_pred EEEc----CCcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSN----PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~----~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++.. ....++||||+ +|+|.+++++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~ 144 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQ 144 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBG
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHh
Confidence 9988 67899999999 9999998753
No 381
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.95 E-value=5.4e-10 Score=109.75 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=75.1
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc-----
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF----- 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~----- 504 (524)
.++|...+.||+|+||.||+|.. .+|+.||||.+.... ....+.+.+|+.+++.++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 46799999999999999999996 468899999996532 3446778999999999999999999999987754
Q ss_pred -ceEEEcccCCCCHHHHHH
Q 040301 505 -KALMWGRLLNISITIIRR 522 (524)
Q Consensus 505 -~~lv~e~~~~gsL~~~l~ 522 (524)
.++||||++ |+|.++++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~ 120 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG 120 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT
T ss_pred eEEEEecccc-CCHHHHhc
Confidence 499999998 58876653
No 382
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=98.95 E-value=2.2e-10 Score=112.55 Aligned_cols=85 Identities=8% Similarity=0.096 Sum_probs=71.4
Q ss_pred hccccccCcccCCCCceEEEEEeC---------CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccc---------
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS---------DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIK--------- 494 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~---------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~--------- 494 (524)
.++|+..+.||+|+||.||+|+.. +++.||+|.+... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 368999999999999999999974 3788999998754 35778999999999999987
Q ss_pred ------eeEEEEc-CCcceEEEcccCCCCHHHHHHh
Q 040301 495 ------ILSSCSN-PDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 495 ------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
+++++.. ++..++||||+ +|+|.+++++
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~ 150 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDV 150 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHH
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHh
Confidence 6777776 67899999999 9999999864
No 383
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.94 E-value=1.5e-07 Score=93.09 Aligned_cols=274 Identities=11% Similarity=0.021 Sum_probs=190.4
Q ss_pred CCccEEEccCCcccccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcC
Q 040301 20 QIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNF 99 (524)
Q Consensus 20 ~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 99 (524)
.+|+.++|..+ ++......|.+. +|+.+.+.. .++.+.. .+|.. .+|+.+++..+ +.......|...
T Consensus 69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~--------~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~ 135 (379)
T 4h09_A 69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGD--------YVFQG-TDLDDFEFPGA-TTEIGNYIFYNS 135 (379)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECT--------TTTTT-CCCSEEECCTT-CCEECTTTTTTC
T ss_pred CCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEecc--------ceecc-CCcccccCCCc-cccccccccccc
Confidence 68999999754 776677788876 788888864 4665544 56665 47999999765 333444445443
Q ss_pred cccccEEEeccCcccccCCccccCCCCCCeEEcccCcCcc------------cCCccccCCCCCCeEecccCcccccCCc
Q 040301 100 SASFQNFYAFNCKLKGNIPQEIGNLRGLTLLSLFNNDLNG------------TISPTMGRLKQLRGLSLKYNNLEGSIPY 167 (524)
Q Consensus 100 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 167 (524)
+++.+.+..+ +.......|.+..+++.+.+..+.... .....+.....+..+.+..... .....
T Consensus 136 --~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~ 211 (379)
T 4h09_A 136 --SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAY 211 (379)
T ss_dssp --CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTT
T ss_pred --eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeec
Confidence 6777766654 444556678888899988876654321 1122344455666665544432 24556
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCCCccChhccCCCCCCEEEcCCCcCcccCCcCccCCCCC
Q 040301 168 DLCHLKLMYGIRLTGNKLSGHIPPCLASLTSLRELHLGSNKLTSSIPSSLWSLEYILMINLSSNSLNDSLPSNIQTLKVL 247 (524)
Q Consensus 168 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 247 (524)
.+....+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 6777888988888665 34355667888899999998766 55455677888899999998754 544556678899999
Q ss_pred CEEEcCCCcCcccc-ccccccCCCCEEEccCCcccCCCcccccCCCCCCEEeCCCCcCCCCCcccccCC
Q 040301 248 RVLDLSRNQLSGDI-STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNLSGKIPKSLETL 315 (524)
Q Consensus 248 ~~L~l~~n~l~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 315 (524)
+.+.+.++.++.+. ..|.++.+|+.+.|..+ ++.....+|.++.+|+.+.+..+ ++..-..+|..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 99999988887666 67889999999999765 66556678899999999988654 443444555554
No 384
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.93 E-value=6.9e-10 Score=111.17 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=65.6
Q ss_pred ccccc-cCcccCCCCceEEEEEeC---CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc--CCcceE
Q 040301 434 DEFNE-CNLLGTGSFGSVYKGTIS---DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN--PDFKAL 507 (524)
Q Consensus 434 ~~~~~-~~~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~--~~~~~l 507 (524)
+.|+. .++||+|+||.||+|... +++.||||.+.... ....+.+|++++++++|||||++++++.. +...++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 34655 458999999999999964 57789999997543 23467899999999999999999999954 668999
Q ss_pred EEcccCCCCHHHHHH
Q 040301 508 MWGRLLNISITIIRR 522 (524)
Q Consensus 508 v~e~~~~gsL~~~l~ 522 (524)
||||++ |+|.++++
T Consensus 98 v~e~~~-~~l~~~~~ 111 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIK 111 (405)
T ss_dssp EEECCS-EEHHHHHH
T ss_pred EEeCCC-CCHHHHHH
Confidence 999997 58888775
No 385
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=98.92 E-value=2.6e-09 Score=103.06 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=67.1
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc-hH-HHHHHHHHHHHHhcCCCCCccceeEEEEcCCcc
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL-ER-AFRSFDSECEVLRNVCHRNLIKILSSCSNPDFK 505 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~-~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~ 505 (524)
.....++|+..+.||+|+||.||+|.. .+++.||||.+.... .. ..+.+..+..+++.++||||+++++++.+++..
T Consensus 20 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~ 99 (318)
T 2dyl_A 20 YQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDV 99 (318)
T ss_dssp EECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred hhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcE
Confidence 344556789999999999999999997 478999999997543 22 233444555678888999999999999999999
Q ss_pred eEEEcccCCCCHHHHH
Q 040301 506 ALMWGRLLNISITIIR 521 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l 521 (524)
++||||+ ++.+..+.
T Consensus 100 ~lv~e~~-~~~~~~l~ 114 (318)
T 2dyl_A 100 FIAMELM-GTCAEKLK 114 (318)
T ss_dssp EEEECCC-SEEHHHHH
T ss_pred EEEEecc-CCcHHHHH
Confidence 9999999 45665554
No 386
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=98.92 E-value=6.5e-10 Score=112.07 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=73.9
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
....+|...+.||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+.+..|+||
T Consensus 21 i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~ 97 (432)
T 3p23_A 21 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI 97 (432)
T ss_dssp ETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEE
T ss_pred EccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEE
Confidence 34456888899999999996655556789999999965332 2345799999999 8999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
|||+ |+|.+++++
T Consensus 98 E~~~-g~L~~~l~~ 110 (432)
T 3p23_A 98 ELCA-ATLQEYVEQ 110 (432)
T ss_dssp ECCS-EEHHHHHHS
T ss_pred ECCC-CCHHHHHHh
Confidence 9997 699999864
No 387
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=1.2e-09 Score=106.78 Aligned_cols=160 Identities=13% Similarity=0.138 Sum_probs=72.6
Q ss_pred cccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCcccccCCcccc--CCCCCCEEEccC--CcccccCCccccC
Q 040301 120 EIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNNLEGSIPYDLC--HLKLMYGIRLTG--NKLSGHIPPCLAS 195 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~~~~~~~ 195 (524)
.+..+|+|+.|++++|.-. .++. +. +++|+.|++..+.++......+. .+|+|+.|+|+. |...+.. .+
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~-- 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DM-- 239 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CG--
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hH--
Confidence 3455666777777665211 1222 22 56667776666665533222232 456666666542 1111000 00
Q ss_pred CCCCCEEEccCCcCCCccChhc--cCCCCCCEEEcCCCcCcccCCcCc---cCCCCCCEEEcCCCcCcccc-----cccc
Q 040301 196 LTSLRELHLGSNKLTSSIPSSL--WSLEYILMINLSSNSLNDSLPSNI---QTLKVLRVLDLSRNQLSGDI-----STIG 265 (524)
Q Consensus 196 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~-----~~~~ 265 (524)
. .+...+ ..+++|+.|+|.+|.+.+..+..+ ..+++|++|+|+.|.+.+.. ..+.
T Consensus 240 --------------~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 240 --------------N-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp --------------G-GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred --------------H-HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 0 000001 123455555555554432111111 13456666666666655421 2234
Q ss_pred ccCCCCEEEccCCcccCCCcccccC-CCCCCEEeCCCCc
Q 040301 266 ALVDLETLSLASNQFQGPIPESVGS-LISLESLDLSGNN 303 (524)
Q Consensus 266 ~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~ 303 (524)
.+++|+.|+|++|.++...-..+.. + ...+++++++
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 4566777777766665433222322 1 3456666665
No 388
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.91 E-value=1.5e-09 Score=106.85 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=63.9
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc-
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF- 504 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~- 504 (524)
.......++|+..+.||+|+||.||+|.. .+++.||||++..... ....+.+|++.++.++||||+++++++...+.
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 34456678899999999999999999997 4689999999865432 23456678888899999999999999976433
Q ss_pred ------ceEEEcccCCCCHHHHH
Q 040301 505 ------KALMWGRLLNISITIIR 521 (524)
Q Consensus 505 ------~~lv~e~~~~gsL~~~l 521 (524)
.++||||+++ ++.+.+
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~ 116 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCC 116 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHH
T ss_pred cccceeEEEEeecccc-cHHHHH
Confidence 7899999986 555544
No 389
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=98.91 E-value=3.4e-09 Score=109.76 Aligned_cols=86 Identities=14% Similarity=-0.040 Sum_probs=63.6
Q ss_pred cccCcccCCCCceEEEEEeCCCCEEEEEEeeccc--------hHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCcceEE
Q 040301 437 NECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL--------ERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 437 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~~~lv 508 (524)
...+.||+|+||.||+|.. .++.+|+|+..... ....+.|.+|++++++++||||+++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3456899999999999964 56788999874322 11245689999999999999999777777788889999
Q ss_pred EcccCCCCHHHHHHh
Q 040301 509 WGRLLNISITIIRRH 523 (524)
Q Consensus 509 ~e~~~~gsL~~~l~~ 523 (524)
||||++|+|.+++++
T Consensus 418 mE~~~ggsL~~~l~~ 432 (540)
T 3en9_A 418 MSYINGKLAKDVIED 432 (540)
T ss_dssp EECCCSEEHHHHSTT
T ss_pred EECCCCCCHHHHHHH
Confidence 999999999998764
No 390
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.90 E-value=1.7e-09 Score=105.38 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=68.7
Q ss_pred hhccccccC-cccCCCCceEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEc----CCcc
Q 040301 432 ATDEFNECN-LLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSN----PDFK 505 (524)
Q Consensus 432 ~~~~~~~~~-~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~----~~~~ 505 (524)
..++|...+ .||+|+||.||+|... +++.||||++..... ..+ .....++.++||||+++++++.. +...
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~---e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK-ARQ---EVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH-HHH---HHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH-HHH---HHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 446788854 6999999999999974 689999999965321 112 12233567799999999999976 4458
Q ss_pred eEEEcccCCCCHHHHHHh
Q 040301 506 ALMWGRLLNISITIIRRH 523 (524)
Q Consensus 506 ~lv~e~~~~gsL~~~l~~ 523 (524)
++|||||++|+|.+++++
T Consensus 102 ~lv~e~~~gg~L~~~l~~ 119 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQE 119 (336)
T ss_dssp EEEEECCTTEEHHHHHHT
T ss_pred EEEEeccCCCCHHHHHHh
Confidence 999999999999999864
No 391
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=98.90 E-value=2.4e-09 Score=107.91 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=75.4
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcC------CCCCccceeEEEEcCCc
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNV------CHRNLIKILSSCSNPDF 504 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l------~H~niv~l~~~~~~~~~ 504 (524)
....|+..+.||+|+||.||+|.. .+++.||||++.... ...+++.+|+++++.+ .|+||+++++++...+.
T Consensus 95 ~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 173 (429)
T 3kvw_A 95 VAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH 173 (429)
T ss_dssp ETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred ccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence 345699999999999999999986 468899999997543 3345677888887766 67899999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+. |+|.+++++
T Consensus 174 ~~lv~e~~~-~~L~~~l~~ 191 (429)
T 3kvw_A 174 ICMTFELLS-MNLYELIKK 191 (429)
T ss_dssp EEEEECCCC-CBHHHHHHH
T ss_pred EEEEEeccC-CCHHHHHHh
Confidence 999999997 699998864
No 392
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=98.90 E-value=1.6e-09 Score=107.04 Aligned_cols=90 Identities=9% Similarity=0.087 Sum_probs=62.3
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHH---HHHhcCCCCCcccee-------E
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSEC---EVLRNVCHRNLIKIL-------S 497 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei---~~l~~l~H~niv~l~-------~ 497 (524)
....|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+ ..++. +||||++++ +
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d 138 (371)
T 3q60_A 60 GERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSD 138 (371)
T ss_dssp CEEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCE
T ss_pred CceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeeh
Confidence 455689999999999999999996 478899999997643 23456677885 55556 799988755 4
Q ss_pred EEEcC-----------------CcceEEEcccCCCCHHHHHHh
Q 040301 498 SCSNP-----------------DFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 498 ~~~~~-----------------~~~~lv~e~~~~gsL~~~l~~ 523 (524)
++..+ ...|+|||||+ |+|.+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~ 180 (371)
T 3q60_A 139 AVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFST 180 (371)
T ss_dssp EEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHH
T ss_pred heecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHH
Confidence 44432 23799999999 899999974
No 393
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=98.89 E-value=1.4e-09 Score=105.83 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=75.9
Q ss_pred hccccccCcccCCCCceEEEEEe--CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC------ccceeEEEEcCCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI--SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN------LIKILSSCSNPDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~l~~~~~~~~~ 504 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.++... ...+.+.+|+++++.++|++ ++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 45799999999999999999986 367889999997543 34567889999988886654 9999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+ +|+|.+++++
T Consensus 92 ~~lv~e~~-~~~l~~~l~~ 109 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKE 109 (339)
T ss_dssp EEEEEECC-CCBHHHHHHH
T ss_pred EEEEEcCC-CCCHHHHHHh
Confidence 99999999 8899999864
No 394
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=98.88 E-value=1.5e-09 Score=108.24 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=73.3
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC--------CCCccceeEEEE---
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC--------HRNLIKILSSCS--- 500 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~--------H~niv~l~~~~~--- 500 (524)
.++|+..+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|+++++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 46799999999999999999996 568889999997543 34567889999999885 788999999998
Q ss_pred -cCCcceEEEcccCCCCHHHHHH
Q 040301 501 -NPDFKALMWGRLLNISITIIRR 522 (524)
Q Consensus 501 -~~~~~~lv~e~~~~gsL~~~l~ 522 (524)
.....++||||+ +|++.+++.
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~ 136 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWII 136 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHH
Confidence 556799999999 567776664
No 395
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=8.5e-10 Score=107.83 Aligned_cols=178 Identities=16% Similarity=0.203 Sum_probs=89.4
Q ss_pred CCCCeEEcccCcCcc-c-------CCccccCCCCCCeEecccCccc---------ccCCccccCCCCCCEEEccCCcccc
Q 040301 125 RGLTLLSLFNNDLNG-T-------ISPTMGRLKQLRGLSLKYNNLE---------GSIPYDLCHLKLMYGIRLTGNKLSG 187 (524)
Q Consensus 125 ~~L~~L~l~~n~l~~-~-------~~~~~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~l~~n~l~~ 187 (524)
..++.|.+......+ . +......+++|+.|.+..+... +.+...+..+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456677776655431 1 1222445678888887654331 112334456677777777766311
Q ss_pred cCCccccCCCCCCEEEccCCcCCCccChhcc--CCCCCCEEEcCC--CcCccc-----CCcCc--cCCCCCCEEEcCCCc
Q 040301 188 HIPPCLASLTSLRELHLGSNKLTSSIPSSLW--SLEYILMINLSS--NSLNDS-----LPSNI--QTLKVLRVLDLSRNQ 256 (524)
Q Consensus 188 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~ 256 (524)
.++. +. +++|+.|++..+.+.......+. .+|+|+.|+|+. |...+. +...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1222 32 66777777776666533223332 567777777642 111110 11111 235666666666665
Q ss_pred Ccccc----ccccccCCCCEEEccCCcccCC----CcccccCCCCCCEEeCCCCcCC
Q 040301 257 LSGDI----STIGALVDLETLSLASNQFQGP----IPESVGSLISLESLDLSGNNLS 305 (524)
Q Consensus 257 l~~~~----~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 305 (524)
+.+.. .....+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 54321 1112345566666666655542 1222233455666666666554
No 396
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.86 E-value=1.4e-09 Score=109.44 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=68.0
Q ss_pred ccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcC------Ccce
Q 040301 434 DEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNP------DFKA 506 (524)
Q Consensus 434 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~------~~~~ 506 (524)
..|+..+.||+|+||.||+|+. .+++.||||++..... .+.+|+++++.++|||||+++++|... .+++
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 4688899999999999999997 4689999999965431 234799999999999999999998542 2367
Q ss_pred EEEcccCCCCHHHHHH
Q 040301 507 LMWGRLLNISITIIRR 522 (524)
Q Consensus 507 lv~e~~~~gsL~~~l~ 522 (524)
+||||+++ ++.+.++
T Consensus 130 lv~e~~~~-~l~~~~~ 144 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVAR 144 (420)
T ss_dssp EEEECCCE-EHHHHHH
T ss_pred eehhcccc-cHHHHHH
Confidence 99999985 6766654
No 397
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=98.86 E-value=1.1e-09 Score=105.94 Aligned_cols=94 Identities=27% Similarity=0.305 Sum_probs=78.0
Q ss_pred hhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccch------HHHHHHHHHHHHHhcCC--CCCccceeEEEE
Q 040301 430 QRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLE------RAFRSFDSECEVLRNVC--HRNLIKILSSCS 500 (524)
Q Consensus 430 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~ 500 (524)
....++|+..+.||+|+||.||+|.. .+++.||||.+..... ...+.+.+|+.++++++ ||||+++++++.
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~ 118 (320)
T 3a99_A 39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE 118 (320)
T ss_dssp -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence 33456799999999999999999996 5688999999975431 12245678999999996 599999999999
Q ss_pred cCCcceEEEcccCC-CCHHHHHHh
Q 040301 501 NPDFKALMWGRLLN-ISITIIRRH 523 (524)
Q Consensus 501 ~~~~~~lv~e~~~~-gsL~~~l~~ 523 (524)
.++..++||||+.+ |+|.+++++
T Consensus 119 ~~~~~~lv~e~~~~~~~L~~~l~~ 142 (320)
T 3a99_A 119 RPDSFVLILERPEPVQDLFDFITE 142 (320)
T ss_dssp CSSEEEEEEECCSSEEEHHHHHHH
T ss_pred cCCcEEEEEEcCCCCccHHHHHhc
Confidence 99999999999987 899999863
No 398
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=98.81 E-value=3.8e-09 Score=100.77 Aligned_cols=88 Identities=20% Similarity=0.326 Sum_probs=73.5
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEE-EcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC-SNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~-~~~~~~~lv~ 509 (524)
..++|+..+.||+|+||.||+|+. .+++.||||.+..... .+++.+|+++++.++|++++..++++ ..++..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 3uzp_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence 346799999999999999999996 6788999999865432 24588999999999998877666665 5567789999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+ +|+|.++++
T Consensus 85 e~~-~~~L~~~~~ 96 (296)
T 3uzp_A 85 ELL-GPSLEDLFN 96 (296)
T ss_dssp ECC-CCBHHHHHH
T ss_pred Eec-CCCHHHHHH
Confidence 999 899999986
No 399
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.81 E-value=2.6e-09 Score=105.55 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=75.5
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-----------CCCccceeEEEE
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-----------HRNLIKILSSCS 500 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-----------H~niv~l~~~~~ 500 (524)
.++|+..+.||+|+||.||+|.. .+++.||||.+.... ...+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 35799999999999999999996 578899999997543 34567889999988876 899999999998
Q ss_pred cCC----cceEEEcccCCCCHHHHHHh
Q 040301 501 NPD----FKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 501 ~~~----~~~lv~e~~~~gsL~~~l~~ 523 (524)
..+ ..++||||+ +|+|.+++++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~ 122 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKK 122 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHH
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHH
Confidence 654 789999999 8999999864
No 400
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.80 E-value=5.2e-09 Score=103.84 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=78.0
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CC-----CccceeEEE
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HR-----NLIKILSSC 499 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~-----niv~l~~~~ 499 (524)
+.-....++|+..+.||+|+||.||+|.. .+++.||||++.... ...+++.+|+++++.++ |+ +|+++++++
T Consensus 47 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~ 125 (382)
T 2vx3_A 47 KNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHF 125 (382)
T ss_dssp CTTCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEE
T ss_pred ecCCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeee
Confidence 34445567899999999999999999996 467889999997543 34566778888888775 45 499999999
Q ss_pred EcCCcceEEEcccCCCCHHHHHHh
Q 040301 500 SNPDFKALMWGRLLNISITIIRRH 523 (524)
Q Consensus 500 ~~~~~~~lv~e~~~~gsL~~~l~~ 523 (524)
...+..++||||++ |+|.+++++
T Consensus 126 ~~~~~~~lv~e~~~-~~L~~~l~~ 148 (382)
T 2vx3_A 126 MFRNHLCLVFEMLS-YNLYDLLRN 148 (382)
T ss_dssp EETTEEEEEEECCC-CBHHHHHHH
T ss_pred ccCCceEEEEecCC-CCHHHHHhh
Confidence 99999999999996 599999864
No 401
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=98.80 E-value=4.5e-09 Score=100.23 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=69.8
Q ss_pred hhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEE-EcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSC-SNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~-~~~~~~~lv~ 509 (524)
..++|+..+.||+|+||.||+|+. .+++.||||.+.... ..+++.+|+++++.++|++++..++++ ..++..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 456799999999999999999996 578899999875433 224577899999999988877777766 5677889999
Q ss_pred cccCCCCHHHHHH
Q 040301 510 GRLLNISITIIRR 522 (524)
Q Consensus 510 e~~~~gsL~~~l~ 522 (524)
||+ +|+|.++++
T Consensus 85 e~~-~~~L~~~~~ 96 (296)
T 4hgt_A 85 ELL-GPSLEDLFN 96 (296)
T ss_dssp ECC-CCBHHHHHH
T ss_pred Ecc-CCCHHHHHH
Confidence 999 899999986
No 402
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=98.80 E-value=3e-09 Score=106.04 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=65.1
Q ss_pred hccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCccceeEEEEcCCc------ce
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNLIKILSSCSNPDF------KA 506 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~~~~------~~ 506 (524)
...|+..+.||+|+||.||+|....+..+|+|++..... ...+|+++++.++||||+++++++..... .+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 356999999999999999999986666799998864331 12369999999999999999999965433 78
Q ss_pred EEEcccCCCC
Q 040301 507 LMWGRLLNIS 516 (524)
Q Consensus 507 lv~e~~~~gs 516 (524)
+||||++++.
T Consensus 115 lv~e~~~~~l 124 (394)
T 4e7w_A 115 LVLEYVPETV 124 (394)
T ss_dssp EEEECCSEEH
T ss_pred EEeeccCccH
Confidence 9999998643
No 403
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=98.76 E-value=1.1e-08 Score=104.23 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=72.9
Q ss_pred hccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC-CCccceeEEEEcCCcceEEEc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH-RNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H-~niv~l~~~~~~~~~~~lv~e 510 (524)
.++|+..+.||+|+||.||+|+. .+++.||||.+..... ..++.+|+++++.++| ++|..+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46799999999999999999996 5789999998865432 2357789999999987 556666667777888999999
Q ss_pred ccCCCCHHHHHHh
Q 040301 511 RLLNISITIIRRH 523 (524)
Q Consensus 511 ~~~~gsL~~~l~~ 523 (524)
|+ +|+|.++++.
T Consensus 84 ~~-g~sL~~ll~~ 95 (483)
T 3sv0_A 84 LL-GPSLEDLFNF 95 (483)
T ss_dssp CC-CCBHHHHHHH
T ss_pred CC-CCCHHHHHHh
Confidence 99 8999999863
No 404
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.74 E-value=9.7e-09 Score=97.12 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=69.7
Q ss_pred hhhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccch------------------HHHHHHHHHHHHHhcC
Q 040301 426 YLDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLE------------------RAFRSFDSECEVLRNV 487 (524)
Q Consensus 426 ~~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~Ei~~l~~l 487 (524)
+..+......|...+.||+|+||.||+|...+|+.||+|.++.... .....+.+|+++++++
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 3445555566777799999999999999997789999999964321 2356789999999999
Q ss_pred CCCCccceeEEEEcCCcceEEEcccCCCCHHH
Q 040301 488 CHRNLIKILSSCSNPDFKALMWGRLLNISITI 519 (524)
Q Consensus 488 ~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~ 519 (524)
+ | +++.+++. .+..++|||||++|+|.+
T Consensus 162 ~--~-~~v~~~~~-~~~~~lvmE~~~g~~L~~ 189 (282)
T 1zar_A 162 Q--G-LAVPKVYA-WEGNAVLMELIDAKELYR 189 (282)
T ss_dssp T--T-SSSCCEEE-EETTEEEEECCCCEEGGG
T ss_pred c--C-CCcCeEEe-ccceEEEEEecCCCcHHH
Confidence 9 4 66666554 356799999999999976
No 405
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.73 E-value=9.9e-09 Score=100.55 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=74.0
Q ss_pred hccccccCcccCCCCceEEEEEeC-CC-CEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC------ccceeEEEEcCCc
Q 040301 433 TDEFNECNLLGTGSFGSVYKGTIS-DW-TNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN------LIKILSSCSNPDF 504 (524)
Q Consensus 433 ~~~~~~~~~ig~g~~g~v~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n------iv~l~~~~~~~~~ 504 (524)
.++|+..+.||+|+||.||+|... ++ +.||+|.++... ...+.+.+|+.++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 467999999999999999999963 44 689999997543 34567888999999887766 9999999999999
Q ss_pred ceEEEcccCCCCHHHHHHh
Q 040301 505 KALMWGRLLNISITIIRRH 523 (524)
Q Consensus 505 ~~lv~e~~~~gsL~~~l~~ 523 (524)
.++||||+ +|++.+++.+
T Consensus 97 ~~lv~e~~-~~~l~~~l~~ 114 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKE 114 (355)
T ss_dssp EEEEEECC-CCBHHHHHHH
T ss_pred EEEEEecc-CCChHHHHHh
Confidence 99999999 5677777653
No 406
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.67 E-value=1.8e-08 Score=104.84 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=61.2
Q ss_pred ccCCCCceEEEEE-eCCCCEEEEEEeeccc----------hHHHHHHHHHHHHHhcC-CCCCccceeEEEEcCCcceEEE
Q 040301 442 LGTGSFGSVYKGT-ISDWTNVAIKIFNLQL----------ERAFRSFDSECEVLRNV-CHRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 442 ig~g~~g~v~~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~Ei~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 509 (524)
.+.|+.|....++ +-.|+.+|||.+.... ....++|.+|+++|+++ .|+||+++++++.++...||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4455555554443 2357889999996531 23456799999999999 7999999999999999999999
Q ss_pred cccCCCCHHHHHHh
Q 040301 510 GRLLNISITIIRRH 523 (524)
Q Consensus 510 e~~~~gsL~~~l~~ 523 (524)
||++||+|.++|++
T Consensus 322 Eyv~G~~L~d~i~~ 335 (569)
T 4azs_A 322 EKLPGRLLSDMLAA 335 (569)
T ss_dssp ECCCSEEHHHHHHT
T ss_pred ecCCCCcHHHHHHh
Confidence 99999999999975
No 407
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=1e-08 Score=90.37 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=28.8
Q ss_pred CcccccccCCCEEEcccc-ccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC
Q 040301 37 PNTFGNLRHLSSLLLTWN-NLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG 90 (524)
Q Consensus 37 p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 90 (524)
...+...++|++|+|++| .+.... ...+...+...++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g----~~~l~~~L~~~~~L~~L~Ls~n~i~~ 79 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPT----LKACAEALKTNTYVKKFSIVGTRSND 79 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHH----HHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHH----HHHHHHHHHhCCCcCEEECcCCCCCh
Confidence 334455667777777777 665421 11111345556677777777777664
No 408
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=5.6e-08 Score=85.59 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=31.5
Q ss_pred cccCCCCCCEEEccCC-cCCCc----cChhccCCCCCCEEEcCCCcCccc----CCcCccCCCCCCEEEcCCCcCc
Q 040301 192 CLASLTSLRELHLGSN-KLTSS----IPSSLWSLEYILMINLSSNSLNDS----LPSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 192 ~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 258 (524)
.+...++|++|+|++| .+... +...+...++|+.|+|++|.+.+. +...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445556666666666 55421 223344445555555555555431 1122233344555555555444
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=4.7e-08 Score=90.59 Aligned_cols=63 Identities=33% Similarity=0.459 Sum_probs=28.9
Q ss_pred CCCCCCEEEcCCCcCcc--cCCcCccCCCCCCEEEcCCCcCcccc--ccccccCCCCEEEccCCcccC
Q 040301 219 SLEYILMINLSSNSLND--SLPSNIQTLKVLRVLDLSRNQLSGDI--STIGALVDLETLSLASNQFQG 282 (524)
Q Consensus 219 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~L~~N~l~~ 282 (524)
.+++|+.|+|++|++.+ .++..+..+++|+.|+|++|++++.. ..+..+ +|++|+|++|++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 34555555555555544 22333444555555555555554431 112222 44555555555443
No 410
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=4.7e-07 Score=83.87 Aligned_cols=100 Identities=21% Similarity=0.159 Sum_probs=65.8
Q ss_pred EEccCCccc---ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCCCCCChhHhcCc-
Q 040301 25 MDLSSNSFS---GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGGILPPVIGNFS- 100 (524)
Q Consensus 25 Ldls~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~- 100 (524)
++++.|+.. ..++....++++|++|+|++|+++++.. +| ..+..+++|+.|+|++|.+.+. ..+..+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~----l~--~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~ 219 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD----MS--SIVQKAPNLKILNLSGNELKSE--RELDKIKG 219 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG----GT--THHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc----ch--hHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence 667777443 2222222467888888888888877642 12 4455778888888888888865 2222221
Q ss_pred ccccEEEeccCcccccCC-------ccccCCCCCCeEEc
Q 040301 101 ASFQNFYAFNCKLKGNIP-------QEIGNLRGLTLLSL 132 (524)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l 132 (524)
.+|++|++.+|.+.+..| ..+..+++|+.||-
T Consensus 220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 168888888888876555 24678899998874
No 411
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=98.19 E-value=8.9e-07 Score=82.43 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=60.7
Q ss_pred cccccCcccCCCCceEEEEEe-CCCCE--EEEEEeeccch------------------------HHHHHHHHHHHHHhcC
Q 040301 435 EFNECNLLGTGSFGSVYKGTI-SDWTN--VAIKIFNLQLE------------------------RAFRSFDSECEVLRNV 487 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~-~~~~~--vavK~~~~~~~------------------------~~~~~~~~Ei~~l~~l 487 (524)
-|+..+.||+|+||.||+|.. .+|+. ||||.++.... .....+.+|++++.++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 366778999999999999997 67888 99998754311 1123678999999999
Q ss_pred CCCCc--cceeEEEEcCCcceEEEcccCC-C----CHHHHH
Q 040301 488 CHRNL--IKILSSCSNPDFKALMWGRLLN-I----SITIIR 521 (524)
Q Consensus 488 ~H~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l 521 (524)
.|+++ ...+++ ...++||||+.+ | +|.++.
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~ 164 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELG 164 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHG
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHh
Confidence 88864 344432 467999999942 4 676654
No 412
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=9e-07 Score=75.99 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=40.7
Q ss_pred CCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCC-CCCCCChhHhcC---cccccEEEeccCc-ccccCCc
Q 040301 45 HLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNP-LGGILPPVIGNF---SASFQNFYAFNCK-LKGNIPQ 119 (524)
Q Consensus 45 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~---~~~L~~L~l~~n~-l~~~~~~ 119 (524)
+|++||++++.+++... ..+.++++|++|+|++|. ++...-..+..+ ..+|++|++++|. ++...-.
T Consensus 62 ~L~~LDLs~~~Itd~GL--------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF--------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCCCCGGGG--------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCCccHHHH--------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 45555555555544322 334455556666666553 433222223322 1145555555553 4433333
Q ss_pred cccCCCCCCeEEcccCc
Q 040301 120 EIGNLRGLTLLSLFNND 136 (524)
Q Consensus 120 ~~~~l~~L~~L~l~~n~ 136 (524)
.+..+++|++|++++|.
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 44556666666666654
No 413
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=6e-07 Score=77.08 Aligned_cols=85 Identities=7% Similarity=0.053 Sum_probs=68.5
Q ss_pred CCCccEEEccCCcccccCCcccccccCCCEEEccccc-cCCCCCCccccCccccCCCC----CCCCEEEccCCC-CCCCC
Q 040301 19 HQIYWVMDLSSNSFSGHIPNTFGNLRHLSSLLLTWNN-LTTESSLADQWSFLSALTNC----RHLKALSLGSNP-LGGIL 92 (524)
Q Consensus 19 ~~~l~~Ldls~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~ 92 (524)
.-+|+.||+|+|.++...-..+..+++|++|+|++|. +++... ..++.+ ++|++|+|++|. |+...
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL--------~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL--------ERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH--------HHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH--------HHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4579999999999998877788999999999999995 766321 344443 379999999986 77655
Q ss_pred ChhHhcCcccccEEEeccCc
Q 040301 93 PPVIGNFSASFQNFYAFNCK 112 (524)
Q Consensus 93 ~~~~~~~~~~L~~L~l~~n~ 112 (524)
-..+..++ +|+.|++++|.
T Consensus 132 l~~L~~~~-~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFR-NLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCT-TCCEEEEESCT
T ss_pred HHHHhcCC-CCCEEECCCCC
Confidence 55677776 99999999985
No 414
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.89 E-value=7.5e-06 Score=81.82 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=48.4
Q ss_pred hhhhhccccccCcccCCCCceEEEEEe-CCCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCCC
Q 040301 429 IQRATDEFNECNLLGTGSFGSVYKGTI-SDWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVCH 489 (524)
Q Consensus 429 l~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~H 489 (524)
+......|...+.||+|+||.||+|+. .+|+.||||++.... ....+.|.+|+.+++.++|
T Consensus 73 ~~~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 73 LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp SSSCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred CCCCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 334556788889999999999999995 578999999987332 2235678999999999987
No 415
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=97.82 E-value=1.9e-05 Score=76.98 Aligned_cols=91 Identities=8% Similarity=0.023 Sum_probs=60.8
Q ss_pred hhhhhhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccc-----------------hHH-----HHHHHHHHHHH
Q 040301 427 LDIQRATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQL-----------------ERA-----FRSFDSECEVL 484 (524)
Q Consensus 427 ~~l~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~-----------------~~~-----~~~~~~Ei~~l 484 (524)
..+...-.-|++...||.|+||.||+|...+|+.||||.++... ... .-...+|...|
T Consensus 88 ~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL 167 (397)
T 4gyi_A 88 HTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFM 167 (397)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 44444444488999999999999999998889999999875321 000 01124677788
Q ss_pred hcCCCCCccceeEEEEcCCcceEEEcccCCCCHHH
Q 040301 485 RNVCHRNLIKILSSCSNPDFKALMWGRLLNISITI 519 (524)
Q Consensus 485 ~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~ 519 (524)
.++.+..+.-..-+.. ...+|||||++|++|.+
T Consensus 168 ~rL~~~gv~vp~p~~~--~~~~LVME~i~G~~L~~ 200 (397)
T 4gyi_A 168 KALYEEGFPVPEPIAQ--SRHTIVMSLVDALPMRQ 200 (397)
T ss_dssp HHHHHTTCSCCCEEEE--ETTEEEEECCSCEEGGG
T ss_pred HHHHhcCCCCCeeeec--cCceEEEEecCCccHhh
Confidence 8886555432222222 23479999999988754
No 416
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=97.57 E-value=0.00012 Score=68.05 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=70.4
Q ss_pred hhhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEE
Q 040301 431 RATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMW 509 (524)
Q Consensus 431 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~ 509 (524)
....+|+.....+.|+.+.||++... ++.+++|............+.+|+++++.+. |..+.++++++...+..|+||
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~ 89 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM 89 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEE
Confidence 34456877778888888999999854 6789999987532222345888999998884 678889999999888999999
Q ss_pred cccCCCCHHHH
Q 040301 510 GRLLNISITII 520 (524)
Q Consensus 510 e~~~~gsL~~~ 520 (524)
||++|.++.+.
T Consensus 90 e~i~G~~l~~~ 100 (263)
T 3tm0_A 90 SEADGVLCSEE 100 (263)
T ss_dssp ECCSSEEHHHH
T ss_pred EecCCeehhhc
Confidence 99999998764
No 417
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=3.4e-05 Score=67.48 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=24.0
Q ss_pred ccccCCCEEEcccc-ccCCCCCCccccCccccCCCCCCCCEEEccCCCCCC
Q 040301 41 GNLRHLSSLLLTWN-NLTTESSLADQWSFLSALTNCRHLKALSLGSNPLGG 90 (524)
Q Consensus 41 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 90 (524)
.+-+.|++|+|++| +|.+. |...+...+..-+.|+.|+|++|.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~----ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE----RIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH----HHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred hcCCCccEEECCCCCCCCHH----HHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 33456666666664 55432 111112344555666666666666653
No 418
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=0.00011 Score=64.17 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=18.6
Q ss_pred hccCCCCCCEEEcCCCcCcccC----CcCccCCCCCCEEEcCCCcCc
Q 040301 216 SLWSLEYILMINLSSNSLNDSL----PSNIQTLKVLRVLDLSRNQLS 258 (524)
Q Consensus 216 ~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~ 258 (524)
.+..-+.|+.|+|++|.+.+.- ...+..-..|++|+|+.|.|.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344445555555555554321 112223344555555555543
No 419
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.19 E-value=0.00074 Score=55.01 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=47.2
Q ss_pred CEEEccCCccc-CCCcccccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEEccCCcCccccC
Q 040301 271 ETLSLASNQFQ-GPIPESVGSLISLESLDLSGNNLSGKIPKSLETLSHLKQFNASHNRLEGKIL 333 (524)
Q Consensus 271 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~ 333 (524)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|++++|++.+.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36777888776 24565432 468999999999997777788889999999999999987654
No 420
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=97.12 E-value=0.00047 Score=64.88 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=60.1
Q ss_pred ccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCC---CccceeEEEEcCCcceEEEcccCC
Q 040301 438 ECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHR---NLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 438 ~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~---niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
..+.++.|.++.||++...+|+.++||............|.+|++.|+.+.+. .+.+++++. ..++||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 45678999999999999888999999987543222235688999999999765 577887763 47999999999
Q ss_pred CCH
Q 040301 515 ISI 517 (524)
Q Consensus 515 gsL 517 (524)
+++
T Consensus 95 ~~~ 97 (288)
T 3d1u_A 95 RPP 97 (288)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 421
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=97.09 E-value=0.00041 Score=64.06 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=61.2
Q ss_pred hhccccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC--ccceeEEEEcCCcceEEE
Q 040301 432 ATDEFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN--LIKILSSCSNPDFKALMW 509 (524)
Q Consensus 432 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n--iv~l~~~~~~~~~~~lv~ 509 (524)
...++......+.|..+.||++...+|+.+++|...... ...+.+|+++++.+.+.+ +.+++++...++..++||
T Consensus 18 ~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~---~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~ 94 (264)
T 1nd4_A 18 RLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL 94 (264)
T ss_dssp TTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred hcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCccc---chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEE
Confidence 334455433334556689999987777889999876532 245678999988885544 556888888888899999
Q ss_pred cccCCCCHH
Q 040301 510 GRLLNISIT 518 (524)
Q Consensus 510 e~~~~gsL~ 518 (524)
||++|.++.
T Consensus 95 e~i~G~~l~ 103 (264)
T 1nd4_A 95 GEVPGQDLL 103 (264)
T ss_dssp ECCSSEETT
T ss_pred EecCCcccC
Confidence 999998774
No 422
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.07 E-value=0.00098 Score=54.28 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=45.6
Q ss_pred cEEEccCCccc-ccCCcccccccCCCEEEccccccCCCCCCccccCccccCCCCCCCCEEEccCCCCC
Q 040301 23 WVMDLSSNSFS-GHIPNTFGNLRHLSSLLLTWNNLTTESSLADQWSFLSALTNCRHLKALSLGSNPLG 89 (524)
Q Consensus 23 ~~Ldls~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 89 (524)
+.+|.++++++ ..+|..+. ++|++|+|++|+|+.++. ..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~--------~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPP--------GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCT--------TTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccCh--------hhhhhccccCEEEecCCCee
Confidence 47899999886 45665542 368999999999998875 67788889999999999875
No 423
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=95.34 E-value=0.016 Score=56.19 Aligned_cols=78 Identities=8% Similarity=0.100 Sum_probs=56.0
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEee--ccc-hHHHHHHHHHHHHHhcCC--CCCccceeEEEEcC---CcceEEEc
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFN--LQL-ERAFRSFDSECEVLRNVC--HRNLIKILSSCSNP---DFKALMWG 510 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~Ei~~l~~l~--H~niv~l~~~~~~~---~~~~lv~e 510 (524)
.+.++.|.++.||+....+ ..+++|+.. ... ......+.+|+++++.+. +..+.++++++.+. +..|+|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 4578899999999988754 578888776 332 123456788999998886 45688999988776 34899999
Q ss_pred ccCCCCH
Q 040301 511 RLLNISI 517 (524)
Q Consensus 511 ~~~~gsL 517 (524)
|++|..+
T Consensus 122 ~v~G~~l 128 (359)
T 3dxp_A 122 FVSGRVL 128 (359)
T ss_dssp CCCCBCC
T ss_pred ecCCeec
Confidence 9998776
No 424
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=94.59 E-value=0.028 Score=52.59 Aligned_cols=78 Identities=13% Similarity=0.015 Sum_probs=56.0
Q ss_pred ccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC---CCccceeEEEEcCCcceEEEccc
Q 040301 436 FNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH---RNLIKILSSCSNPDFKALMWGRL 512 (524)
Q Consensus 436 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H---~niv~l~~~~~~~~~~~lv~e~~ 512 (524)
...+..+|.|..+.||+.+..+|+.+.+|+-..........|.+|.+.|+.+.- --+.+.+++ +.-++||||+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~l 92 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEECC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEee
Confidence 444567899999999999999999999998754433333567889998887732 234455543 2357899999
Q ss_pred CCCCH
Q 040301 513 LNISI 517 (524)
Q Consensus 513 ~~gsL 517 (524)
+++..
T Consensus 93 ~~~~~ 97 (288)
T 3f7w_A 93 DERPP 97 (288)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88754
No 425
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=93.57 E-value=0.21 Score=47.13 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=59.7
Q ss_pred ccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC---CCCccceeEEEEcCCcceEEEcccCC
Q 040301 438 ECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC---HRNLIKILSSCSNPDFKALMWGRLLN 514 (524)
Q Consensus 438 ~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~~~~~~~~~~lv~e~~~~ 514 (524)
....++.|.+..+|+... ++..+++|..... ....|.+|.+.|+.+. ...+.+.++++...+..++||||+++
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 345788999999999886 4667888887643 2466888988888773 36688899888888889999999998
Q ss_pred CCH
Q 040301 515 ISI 517 (524)
Q Consensus 515 gsL 517 (524)
..+
T Consensus 116 ~~~ 118 (312)
T 3jr1_A 116 SKN 118 (312)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 426
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=92.09 E-value=0.13 Score=50.39 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=48.8
Q ss_pred cCcccCCCCceEEEEEeC-CCCEEEEEEeeccch-------HHHHHHHHHHHHHhcCCC--CC-ccceeEEEEcCCcceE
Q 040301 439 CNLLGTGSFGSVYKGTIS-DWTNVAIKIFNLQLE-------RAFRSFDSECEVLRNVCH--RN-LIKILSSCSNPDFKAL 507 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~Ei~~l~~l~H--~n-iv~l~~~~~~~~~~~l 507 (524)
.+.+|.|.++.||++... +++.++||...+... .....+.+|.++++.+.. |. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 357899999999999753 467899998753211 112356778888887632 33 3455543 3556789
Q ss_pred EEcccCCC
Q 040301 508 MWGRLLNI 515 (524)
Q Consensus 508 v~e~~~~g 515 (524)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999864
No 427
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=91.89 E-value=0.52 Score=43.14 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=56.8
Q ss_pred cccCCCCc-eEEEEEeC-CCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 441 LLGTGSFG-SVYKGTIS-DWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 441 ~ig~g~~g-~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
.+..|..+ .||+.... ++..+.+|.-+.. ...++.+|...|+.+. +--+.+.++++.+++..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 34445555 58987754 4567888876543 3456788999888773 33477888999988999999999999887
Q ss_pred HHHH
Q 040301 518 TIIR 521 (524)
Q Consensus 518 ~~~l 521 (524)
.+..
T Consensus 108 ~~~~ 111 (272)
T 4gkh_A 108 FQVL 111 (272)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6543
No 428
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=90.80 E-value=0.3 Score=46.19 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=52.8
Q ss_pred cccccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC----CCccceeEEEEcCCcceEEEc
Q 040301 435 EFNECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH----RNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 435 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H----~niv~l~~~~~~~~~~~lv~e 510 (524)
.+.....++.|....||+. +..+++|...... ....+.+|.+++..+.+ ..+.+.+++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~~--~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRDS--VRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSHH--HHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcHH--HHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 3445667899999999987 5667888764322 23458899998888865 223455544 56799999
Q ss_pred ccCCCCHH
Q 040301 511 RLLNISIT 518 (524)
Q Consensus 511 ~~~~gsL~ 518 (524)
|++|.++.
T Consensus 108 ~i~G~~l~ 115 (320)
T 3r70_A 108 YIKGERIT 115 (320)
T ss_dssp CCCCBCCC
T ss_pred ecCCcccc
Confidence 99998875
No 429
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=88.58 E-value=0.78 Score=44.22 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=54.5
Q ss_pred ccCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC--ccceeEEEEcC-CcceEEEcccCC
Q 040301 438 ECNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN--LIKILSSCSNP-DFKALMWGRLLN 514 (524)
Q Consensus 438 ~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n--iv~l~~~~~~~-~~~~lv~e~~~~ 514 (524)
....++.|....+|+... ++..+++|..... ..+.+|..++..+.... +.++++++... +..|+||||++|
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G 118 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQG 118 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCS
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCC
Confidence 345678898999998886 5678888877542 24778888888775433 56777777664 568999999998
Q ss_pred CCH
Q 040301 515 ISI 517 (524)
Q Consensus 515 gsL 517 (524)
.++
T Consensus 119 ~~l 121 (362)
T 3ovc_A 119 VTL 121 (362)
T ss_dssp EET
T ss_pred CCc
Confidence 655
No 430
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=87.41 E-value=0.87 Score=42.66 Aligned_cols=75 Identities=8% Similarity=0.012 Sum_probs=53.1
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCC---CccceeEEEE-cCCcceEEEcccCC
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHR---NLIKILSSCS-NPDFKALMWGRLLN 514 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~---niv~l~~~~~-~~~~~~lv~e~~~~ 514 (524)
...++.|....||+. +..+++|.-.. ......+.+|.++|+.+.+. .+.+.+.++. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 345677888889887 45677887422 23456788999999988653 3566776664 34557899999999
Q ss_pred CCHHH
Q 040301 515 ISITI 519 (524)
Q Consensus 515 gsL~~ 519 (524)
..+.+
T Consensus 98 ~~l~~ 102 (306)
T 3tdw_A 98 QILGE 102 (306)
T ss_dssp EECHH
T ss_pred eECch
Confidence 87764
No 431
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=85.50 E-value=0.12 Score=51.84 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=17.3
Q ss_pred cCcccCCCCceEEEEEeCC-CCEEEE------EEeeccc--hHHHHHHHHHHHHHhcCCCCCccceeEEEEc
Q 040301 439 CNLLGTGSFGSVYKGTISD-WTNVAI------KIFNLQL--ERAFRSFDSECEVLRNVCHRNLIKILSSCSN 501 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~Ei~~l~~l~H~niv~l~~~~~~ 501 (524)
.+.+| ||.||+|.+.. ...||| |..+... ....+.|.+|..+++..+|||+++.+++...
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 34555 99999999843 357888 7665422 2334578899999999999999999887654
No 432
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=82.61 E-value=0.35 Score=46.51 Aligned_cols=79 Identities=10% Similarity=-0.040 Sum_probs=52.9
Q ss_pred Ccc-cCCCCceEEEEEeC-------CCCEEEEEEeeccc---hHHHHHHHHHHHHHhcCC-C--CCccceeEEEEcC---
Q 040301 440 NLL-GTGSFGSVYKGTIS-------DWTNVAIKIFNLQL---ERAFRSFDSECEVLRNVC-H--RNLIKILSSCSNP--- 502 (524)
Q Consensus 440 ~~i-g~g~~g~v~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~Ei~~l~~l~-H--~niv~l~~~~~~~--- 502 (524)
+.+ +.|....+|+.... ++..+++|...... ......+.+|+.+++.+. + -.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 456 77888889988753 25678888765422 001235677888887773 2 3577788877655
Q ss_pred CcceEEEcccCCCCHH
Q 040301 503 DFKALMWGRLLNISIT 518 (524)
Q Consensus 503 ~~~~lv~e~~~~gsL~ 518 (524)
+..++||||++|..+.
T Consensus 106 g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPP 121 (357)
T ss_dssp SSCEEEEECCCCBCCC
T ss_pred CCceEEEEecCCCChh
Confidence 3468999999986653
No 433
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=79.66 E-value=1.1 Score=41.76 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=50.2
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-CCCC--ccceeEEEEcCC---cceEEEccc
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-CHRN--LIKILSSCSNPD---FKALMWGRL 512 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-~H~n--iv~l~~~~~~~~---~~~lv~e~~ 512 (524)
.+.++.|....||+.. ..+++|..... .....+.+|.++++.+ .+.. +.+.++.....+ ..|+||||+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4567889998888754 45778875432 3456788999999877 3333 345554443333 358999999
Q ss_pred CCCCHHH
Q 040301 513 LNISITI 519 (524)
Q Consensus 513 ~~gsL~~ 519 (524)
+|.++.+
T Consensus 99 ~G~~l~~ 105 (304)
T 3sg8_A 99 KGVPLTP 105 (304)
T ss_dssp CCEECCH
T ss_pred CCeECCc
Confidence 9987754
No 434
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=74.62 E-value=4.4 Score=38.13 Aligned_cols=72 Identities=7% Similarity=0.007 Sum_probs=40.0
Q ss_pred cccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcC-----CCCCcccee-E--EEEcCCcceEEEccc
Q 040301 441 LLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNV-----CHRNLIKIL-S--SCSNPDFKALMWGRL 512 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l-----~H~niv~l~-~--~~~~~~~~~lv~e~~ 512 (524)
.++.|..+.||+....+| .+++|...... .....|..++..+ ..|.++.-. | +....+..++||||+
T Consensus 39 ~l~gG~~n~~~~v~~~~~-~~vlk~~~~~~----~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i 113 (346)
T 2q83_A 39 VIQGNQMALVWKVHTDSG-AVCLKRIHRPE----KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWI 113 (346)
T ss_dssp ECC----CEEEEEEETTE-EEEEEEECSCH----HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECC
T ss_pred eccccccCcEEEEEeCCC-CEEEEecCCCH----HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEee
Confidence 455567889999987655 48899887532 2223344444433 234444311 1 123356789999999
Q ss_pred CCCCH
Q 040301 513 LNISI 517 (524)
Q Consensus 513 ~~gsL 517 (524)
+|..+
T Consensus 114 ~G~~~ 118 (346)
T 2q83_A 114 EGRPF 118 (346)
T ss_dssp CCBCC
T ss_pred cCccC
Confidence 98654
No 435
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=70.14 E-value=1.7 Score=27.04 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=7.6
Q ss_pred HHHHhhhhhhcccC
Q 040301 394 IIIIMYIRCRKRST 407 (524)
Q Consensus 394 ~~~~~~~~~~~~~~ 407 (524)
.+++++.+.+++++
T Consensus 29 ~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 29 TFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHTTCSSCC
T ss_pred HHHHHhhhhhhhhc
Confidence 34455666665543
No 436
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=67.27 E-value=12 Score=34.77 Aligned_cols=74 Identities=9% Similarity=0.028 Sum_probs=46.0
Q ss_pred cccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC--CCccceeEE-----EEcCCcceEEEcccC
Q 040301 441 LLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH--RNLIKILSS-----CSNPDFKALMWGRLL 513 (524)
Q Consensus 441 ~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H--~niv~l~~~-----~~~~~~~~lv~e~~~ 513 (524)
.++ |....||+....+|+.+++|....... ....+..|..++..+.. -.+++++.. ...++..++||||++
T Consensus 33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~ 110 (328)
T 1zyl_A 33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG 110 (328)
T ss_dssp EEC-CSSSEEEEECCTTCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred eec-CcccceEEEEcCCCCEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecC
Confidence 455 777789988776777789999864321 23455667777766532 123444432 112445678999999
Q ss_pred CCC
Q 040301 514 NIS 516 (524)
Q Consensus 514 ~gs 516 (524)
|..
T Consensus 111 G~~ 113 (328)
T 1zyl_A 111 GRQ 113 (328)
T ss_dssp CEE
T ss_pred CCC
Confidence 754
No 437
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=59.28 E-value=13 Score=36.30 Aligned_cols=73 Identities=12% Similarity=0.022 Sum_probs=44.8
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeecc----ch-----HHHHHHHHHHHHHh-cCCCCCccceeEEEEcCCcceEE
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQ----LE-----RAFRSFDSECEVLR-NVCHRNLIKILSSCSNPDFKALM 508 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~----~~-----~~~~~~~~Ei~~l~-~l~H~niv~l~~~~~~~~~~~lv 508 (524)
.+.+|.|..+.||++.. +++.++||...+. .. .....+..|+..+. ...+..+.+++++. .+..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 35678899999999974 4678999943211 00 02233444443322 22334566677665 5678999
Q ss_pred Eccc-CC
Q 040301 509 WGRL-LN 514 (524)
Q Consensus 509 ~e~~-~~ 514 (524)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
No 438
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=57.02 E-value=14 Score=34.37 Aligned_cols=90 Identities=6% Similarity=0.013 Sum_probs=47.4
Q ss_pred cchhhhhhhhccccc-----cCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC--cccee
Q 040301 424 TSYLDIQRATDEFNE-----CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN--LIKIL 496 (524)
Q Consensus 424 ~~~~~l~~~~~~~~~-----~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n--iv~l~ 496 (524)
++.+++......|.. .+.++.|....+|+....+| .+++|...... ....+..|+.++..+.... +.+++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 333444444444543 23456677788999887655 57788886521 1223445666665553111 23333
Q ss_pred EE------EEcCCcceEEEcccCCCC
Q 040301 497 SS------CSNPDFKALMWGRLLNIS 516 (524)
Q Consensus 497 ~~------~~~~~~~~lv~e~~~~gs 516 (524)
.. ....+..++|+||++|..
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~ 109 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMW 109 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBC
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcC
Confidence 21 112355789999999865
No 439
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=56.59 E-value=8.9 Score=37.68 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=47.4
Q ss_pred CcccCCCCceEEEEEeCC--------CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCc-cceeEEEEcCCcceEEEc
Q 040301 440 NLLGTGSFGSVYKGTISD--------WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL-IKILSSCSNPDFKALMWG 510 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e 510 (524)
..++.|....+|++..++ +..+.+|+..... ....+.+|..+++.+...++ .++++.+.. .+|+|
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e 152 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEE 152 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEEC
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--cHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEE
Confidence 456777788999998753 4678888874321 11345578888887743333 567766532 38999
Q ss_pred ccCCCCH
Q 040301 511 RLLNISI 517 (524)
Q Consensus 511 ~~~~gsL 517 (524)
|++|.++
T Consensus 153 ~l~G~~l 159 (429)
T 1nw1_A 153 YIPSRPL 159 (429)
T ss_dssp CCCEEEC
T ss_pred EeCCccc
Confidence 9986443
No 440
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.65 E-value=37 Score=25.34 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=6.5
Q ss_pred ccccCCCCCCeEecc
Q 040301 143 PTMGRLKQLRGLSLK 157 (524)
Q Consensus 143 ~~~~~l~~L~~L~L~ 157 (524)
.+|.++++|+.+.+-
T Consensus 14 ~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 14 SLFAGNTVIREITVQ 28 (100)
T ss_dssp CTTTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcC
Confidence 344444444444443
No 441
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.18 E-value=38 Score=25.24 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=35.4
Q ss_pred ccccCCccccCCCCCCeEEcccCcCcccCCccccCCCCCCeEecccCc
Q 040301 113 LKGNIPQEIGNLRGLTLLSLFNNDLNGTISPTMGRLKQLRGLSLKYNN 160 (524)
Q Consensus 113 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 160 (524)
++.+....|.++..|+.+.+-.+ ++.+-..+|.+|.+|+.+.+....
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 44455677888999999988654 555667788899999998887653
No 442
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=49.81 E-value=21 Score=34.26 Aligned_cols=73 Identities=7% Similarity=0.099 Sum_probs=42.8
Q ss_pred CcccCCCCceEEEEEeC--------CCCEEEEEEeeccchHHHHHHHHHHHHHhcCC-CCCccceeEEEEcCCcceEEEc
Q 040301 440 NLLGTGSFGSVYKGTIS--------DWTNVAIKIFNLQLERAFRSFDSECEVLRNVC-HRNLIKILSSCSNPDFKALMWG 510 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~-H~niv~l~~~~~~~~~~~lv~e 510 (524)
+.+..|....+|++..+ +++.+.+|+..... .....+.+|.++++.+. +.-..++++++.. .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~-~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-QGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc-chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 35555667788998864 24678888763321 12345668998887763 2223566666543 29999
Q ss_pred ccCCCCH
Q 040301 511 RLLNISI 517 (524)
Q Consensus 511 ~~~~gsL 517 (524)
|++|..+
T Consensus 131 ~i~G~~l 137 (379)
T 3feg_A 131 YIPSRPL 137 (379)
T ss_dssp CCSEEEC
T ss_pred EecCccC
Confidence 9998554
No 443
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=45.09 E-value=42 Score=31.14 Aligned_cols=77 Identities=6% Similarity=-0.053 Sum_probs=40.2
Q ss_pred cccCCCCce-EEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCC--CCccceeEEEEcCCcceEEEcccCCCCH
Q 040301 441 LLGTGSFGS-VYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCH--RNLIKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 441 ~ig~g~~g~-v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H--~niv~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
.++.|.... +|+....++..+++|....... ..+..|+.++..+.. -.+.+++.+.... -++|||++.+..+
T Consensus 25 ~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~--g~ll~e~l~~~~l 99 (333)
T 3csv_A 25 PLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHAR--GLLLIEDLGDALF 99 (333)
T ss_dssp C--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTT--TEEEECCCCSCBH
T ss_pred ECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCC--CEEEEeeCCCcch
Confidence 454444433 6677654466777776544321 223456666655532 2355666654333 3789999988777
Q ss_pred HHHHH
Q 040301 518 TIIRR 522 (524)
Q Consensus 518 ~~~l~ 522 (524)
.+++.
T Consensus 100 ~~~l~ 104 (333)
T 3csv_A 100 TEVIN 104 (333)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76653
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=43.66 E-value=34 Score=32.09 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=41.5
Q ss_pred cCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCC---CCCccceeEE------EEcCCcceEEEcccC
Q 040301 443 GTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVC---HRNLIKILSS------CSNPDFKALMWGRLL 513 (524)
Q Consensus 443 g~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~---H~niv~l~~~------~~~~~~~~lv~e~~~ 513 (524)
|.|....||+....+| .+++|+...... .+|+.++..+. -|.+.+.+.. ....+..++||||++
T Consensus 32 G~g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~ 104 (339)
T 3i1a_A 32 GADTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIH 104 (339)
T ss_dssp TSCSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCC
T ss_pred cCccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccC
Confidence 3344678999987666 889998765432 24555544431 1224444432 233466799999999
Q ss_pred CCCH
Q 040301 514 NISI 517 (524)
Q Consensus 514 ~gsL 517 (524)
|..+
T Consensus 105 G~~~ 108 (339)
T 3i1a_A 105 APNG 108 (339)
T ss_dssp CCBT
T ss_pred CCcC
Confidence 8765
No 445
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.71 E-value=19 Score=24.29 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=4.3
Q ss_pred hhhhhcccCC
Q 040301 399 YIRCRKRSTK 408 (524)
Q Consensus 399 ~~~~~~~~~~ 408 (524)
.+++|+|+++
T Consensus 31 cvkcrhRrrq 40 (70)
T 2klu_A 31 SVRSRHRRRQ 40 (70)
T ss_dssp HHHSSCCSSS
T ss_pred hhHHHHHHHH
Confidence 3444444443
No 446
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=32.01 E-value=29 Score=31.79 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=41.9
Q ss_pred cCcccCCCCceEEEEEeCCCCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCc-cceeEEEEcCCcceEEEccc-CCCC
Q 040301 439 CNLLGTGSFGSVYKGTISDWTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL-IKILSSCSNPDFKALMWGRL-LNIS 516 (524)
Q Consensus 439 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e~~-~~gs 516 (524)
.+.++.|....+|+. ..+.+|........ .-...+|..+++.+....+ .+++++ ..+.-++|+||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCCcc
Confidence 567888888999988 45777877543211 0112357777666532223 355543 344568999999 5544
Q ss_pred H
Q 040301 517 I 517 (524)
Q Consensus 517 L 517 (524)
+
T Consensus 95 l 95 (301)
T 3dxq_A 95 M 95 (301)
T ss_dssp C
T ss_pred C
Confidence 3
No 447
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=28.16 E-value=41 Score=31.88 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=41.7
Q ss_pred CcccCCCCceEEEEEeCC---------CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCC-ccceeEEEEcCCcceEEE
Q 040301 440 NLLGTGSFGSVYKGTISD---------WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRN-LIKILSSCSNPDFKALMW 509 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~n-iv~l~~~~~~~~~~~lv~ 509 (524)
..++.|....+|+....+ +..+.+|........ .....+|.++++.+.... +.++++.. . -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence 356677777899988643 267888876543211 112346777777664333 34666544 2 37899
Q ss_pred cccCCCC
Q 040301 510 GRLLNIS 516 (524)
Q Consensus 510 e~~~~gs 516 (524)
||++|..
T Consensus 114 e~i~G~~ 120 (369)
T 3c5i_A 114 EWLYGDP 120 (369)
T ss_dssp ECCCSEE
T ss_pred EEecCCc
Confidence 9999754
No 448
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=25.07 E-value=72 Score=31.43 Aligned_cols=73 Identities=10% Similarity=0.086 Sum_probs=45.2
Q ss_pred CcccCCCCceEEEEEeCC-CCEEEEEEeeccchHHHHHHHHHHHHHhcCCCCCc-cceeEEEEcCCcceEEEcccCCCCH
Q 040301 440 NLLGTGSFGSVYKGTISD-WTNVAIKIFNLQLERAFRSFDSECEVLRNVCHRNL-IKILSSCSNPDFKALMWGRLLNISI 517 (524)
Q Consensus 440 ~~ig~g~~g~v~~~~~~~-~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e~~~~gsL 517 (524)
..++.|....+|++...+ +..+.+|+........ -.-.+|..++..+...++ .++++++. + .+||||++|.++
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~-~---G~v~e~I~G~~l 188 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFFT-N---GRIEEFMDGYAL 188 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEET-T---EEEEECCCSEEC
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEeC-C---eEEEEeeCCccC
Confidence 456777778899998754 4678888774322110 011478888888764444 56777662 2 359999997544
No 449
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.27 E-value=44 Score=21.70 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.2
Q ss_pred HHHHHH
Q 040301 387 VSSVLI 392 (524)
Q Consensus 387 ~~~~~~ 392 (524)
++..++
T Consensus 18 ~GLLLL 23 (54)
T 2l8s_A 18 AGLLLL 23 (54)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!