BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040303
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 168 SELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNL 227
++L DI+ + EL NL L L G+ ++ LP + Q +P V L
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 228 SHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLE 287
++L LY+ +++ GV +L NLT L+L + +LP+G+ F+KL
Sbjct: 133 TNLTYLYLYHN---QLQSLPKGV-------FDKLTNLTRLDLDNNQLQSLPEGV-FDKLT 181
Query: 288 RYR 290
+ +
Sbjct: 182 QLK 184
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 168 SELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNL 227
++L DI+ + EL NL L L G+ ++ LP + Q +P V L
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 228 SHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLE 287
++L L + +++ GV +L NLT L+L + +LP+G+ F+KL
Sbjct: 133 TNLTYLNLAHN---QLQSLPKGV-------FDKLTNLTELDLSYNQLQSLPEGV-FDKLT 181
Query: 288 RYR 290
+ +
Sbjct: 182 QLK 184
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 119 EKSSLITLPDNFFRKLTQVRVLDLTYMHXXXXXXXXXXXXXXXXXXXYCSELQDI--AVI 176
+ + L +LP F +LT++R+L Y++ ++LQ + +
Sbjct: 45 QSNKLSSLPSKAFHRLTKLRLL---YLND--------------------NKLQTLPAGIF 81
Query: 177 GELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNLSHLEELYIR 236
ELKNLE L + + ++ LP+ + + +PP V +L+ L L +
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL- 140
Query: 237 SFNKWEVEVEAAGVKNASLEE-------LKRLP--------NLTTLELCIPDVNTLPKGL 281
+N+ + + K SL+E LKR+P L TL+L + +P+G
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 282 F--FEKLERYRICIGRW 296
F EKL+ ++ W
Sbjct: 201 FDSLEKLKMLQLQENPW 217
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 401 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 446
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 399 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 444
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 457
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 397 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 442
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 410 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 455
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 168 SELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNL 227
+EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 228 SHLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIP 272
L+ELY++ N+ + ++E + N +L EL L NL TL L
Sbjct: 124 GELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 273 DVNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 414 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 459
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 414 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 459
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 168 SELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNL 227
+EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 228 SHLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIP 272
L+ELY++ N+ + ++E + N +L EL L NL TL L
Sbjct: 124 GELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 273 DVNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 397 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 442
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 416 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 461
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 168 SELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNL 227
+EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 228 SHLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIP 272
L+ELY++ N+ + ++E + N +L EL L NL TL L
Sbjct: 124 GELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 273 DVNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 415 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 460
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 413 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 458
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 410 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 455
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 545 DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR 590
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529
D Q R ++ Q QF++ V +E++ CTG +HI + VIR
Sbjct: 409 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 454
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 169 ELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNLS 228
EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 229 HLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIPD 273
L+ELY++ N+ + ++E + N +L EL L NL TL L
Sbjct: 125 ELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 274 VNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 13/189 (6%)
Query: 224 LSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFF 283
L L + E +RS WE+ E + E + ++ L ++ LP G
Sbjct: 44 LQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSG--- 100
Query: 284 EKLERYRICIGRWCWEDTSPT-CSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPD 342
K+ + +W D S R FR++ ++ + + LQ + L +
Sbjct: 101 -KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRR------LQLVRGGQAEKLGE 153
Query: 343 QDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNT 402
++ EL KL + + LK WV A S SK+ E + EM S+ D P
Sbjct: 154 KERSELRKRKLLAEVT-LKTYWVSKGSAFSTSISKQETELSPEMISSG-SWRDRPFKPYN 211
Query: 403 FFLKGGLPN 411
F G LP+
Sbjct: 212 FLAHGVLPD 220
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 169 ELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNLS 228
EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 229 HLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIPD 273
L+ELY++ N+ + ++E + N L EL L NL TL L
Sbjct: 125 ELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS 183
Query: 274 VNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 169 ELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNLS 228
EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 67 ELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG 125
Query: 229 HLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIPD 273
L+ELY++ N+ + ++E + N +L EL L NL TL L
Sbjct: 126 ELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 184
Query: 274 VNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 185 LYTIPKGFFGSHLLPFAFLHGN 206
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 91 IVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDL 142
+ LHD+++ L P V + + L L+ + L LP F LTQ+ VLDL
Sbjct: 45 LYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 169 ELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNLS 228
EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 229 HLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIPD 273
L+ELY++ N+ + ++E + N L EL L NL TL L
Sbjct: 125 ELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 274 VNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 169 ELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNLS 228
EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 229 HLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIPD 273
L+ELY++ N+ + ++E + N L EL L NL TL L
Sbjct: 125 ELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 274 VNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 169 ELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNLS 228
EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 229 HLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIPD 273
L+ELY++ N+ + ++E + N L EL L NL TL L
Sbjct: 125 ELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 274 VNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 169 ELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTXXXXXXXXXXXXXQVIPPNVLSNLS 228
EL + V G L L L L + ++ LP+ +GQ +P L L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 229 HLEELYIRSFNKWEV----------EVEAAGVKNASLEELKR-----LPNLTTLELCIPD 273
L+ELY++ N+ + ++E + N L EL L NL TL L
Sbjct: 125 ELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 274 VNTLPKGLFFEKLERYRICIGR 295
+ T+PKG F L + G
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTY 144
ECPQL+LL L + I P + F+ L ++VL+LTY
Sbjct: 395 ECPQLELLDLAFTRLH-INAPQSPFQNLHFLQVLNLTY 431
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 423 ERIWKSQLPAMSCGIQTLTRLIVYGCGELRCL--FSSSIV--------NSFIRLQHLEID 472
E+ + LP + G+Q + R + G G++R + +V +++R H+ +
Sbjct: 76 EQNFDFSLPIFASGLQIMVRNLESGTGDIRSIDDLPGKVVATTAGSTAATYLREHHISVL 135
Query: 473 ECPILEEIIVIDQQERKNVV 492
E P +EE Q ++ + V
Sbjct: 136 EVPKIEEAYKALQTKKADAV 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,907,371
Number of Sequences: 62578
Number of extensions: 577011
Number of successful extensions: 1273
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1234
Number of HSP's gapped (non-prelim): 51
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)