Query 040303
Match_columns 552
No_of_seqs 314 out of 3056
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-33 6.1E-38 298.2 13.1 207 2-212 436-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.1E-30 1.5E-34 286.9 26.3 397 24-510 470-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.6E-28 3.4E-33 276.0 23.3 421 85-539 92-566 (968)
4 PLN00113 leucine-rich repeat r 100.0 6E-28 1.3E-32 271.3 25.9 425 84-539 116-590 (968)
5 PLN03210 Resistant to P. syrin 99.9 3.6E-23 7.8E-28 232.9 23.5 342 107-538 556-911 (1153)
6 KOG0444 Cytoskeletal regulator 99.9 1.6E-25 3.4E-30 217.5 -4.3 318 84-478 53-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 1.4E-24 3.1E-29 210.9 -4.0 177 84-275 5-186 (1255)
8 KOG4194 Membrane glycoprotein 99.8 2E-21 4.3E-26 187.9 6.3 148 85-236 77-229 (873)
9 KOG4194 Membrane glycoprotein 99.8 1.5E-20 3.3E-25 181.8 10.7 361 85-475 51-427 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 9E-23 1.9E-27 188.7 -8.5 419 84-533 66-541 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 5.4E-22 1.2E-26 183.6 -9.3 193 86-295 114-308 (565)
12 KOG0618 Serine/threonine phosp 99.8 7E-21 1.5E-25 193.7 -3.4 382 111-533 47-489 (1081)
13 KOG0618 Serine/threonine phosp 99.7 5.8E-19 1.3E-23 179.8 -3.1 392 91-537 3-423 (1081)
14 KOG0617 Ras suppressor protein 99.7 1.9E-18 4.2E-23 141.9 -5.1 164 102-281 26-192 (264)
15 PRK15387 E3 ubiquitin-protein 99.6 4.5E-14 9.7E-19 148.6 16.2 113 90-220 205-318 (788)
16 KOG0617 Ras suppressor protein 99.5 1.3E-16 2.8E-21 131.2 -5.0 155 80-239 27-184 (264)
17 PRK15370 E3 ubiquitin-protein 99.5 7.5E-14 1.6E-18 147.9 12.4 114 110-238 179-293 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 7.7E-14 1.7E-18 147.7 12.0 135 135-293 178-313 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.5 2.2E-14 4.9E-19 154.1 5.8 229 84-369 543-781 (889)
20 PRK15387 E3 ubiquitin-protein 99.5 1.9E-12 4.2E-17 136.5 17.5 132 84-238 220-352 (788)
21 KOG4237 Extracellular matrix p 99.2 1.9E-12 4.1E-17 120.7 0.3 255 85-369 66-357 (498)
22 cd00116 LRR_RI Leucine-rich re 99.1 5.2E-12 1.1E-16 123.9 -0.7 11 437-447 277-287 (319)
23 KOG4237 Extracellular matrix p 99.1 2.2E-11 4.7E-16 113.8 3.1 107 83-191 88-199 (498)
24 cd00116 LRR_RI Leucine-rich re 99.1 3.4E-11 7.5E-16 118.1 2.7 84 131-214 19-119 (319)
25 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.4E-15 98.7 5.3 129 133-270 17-148 (175)
26 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3.1E-16 120.1 -3.3 178 87-283 76-255 (722)
27 PF14580 LRR_9: Leucine-rich r 99.0 4.8E-10 1E-14 97.0 5.8 119 87-210 20-147 (175)
28 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3E-16 120.3 -4.3 145 87-239 99-245 (722)
29 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.4E-15 104.2 0.3 184 84-280 212-417 (490)
30 COG4886 Leucine-rich repeat (L 98.8 5.4E-09 1.2E-13 105.7 6.0 188 91-294 98-287 (394)
31 KOG1259 Nischarin, modulator o 98.8 9E-10 1.9E-14 99.4 -0.6 125 108-238 283-409 (490)
32 KOG3207 Beta-tubulin folding c 98.8 3E-09 6.4E-14 101.1 2.0 206 84-294 119-336 (505)
33 COG4886 Leucine-rich repeat (L 98.7 1.6E-08 3.6E-13 102.1 5.9 177 85-279 115-294 (394)
34 KOG4341 F-box protein containi 98.7 3.3E-10 7.2E-15 106.9 -6.2 164 328-527 292-459 (483)
35 KOG3207 Beta-tubulin folding c 98.7 7E-09 1.5E-13 98.6 1.2 157 107-275 119-284 (505)
36 PLN03150 hypothetical protein; 98.5 2.7E-07 5.8E-12 97.9 9.7 102 136-238 419-525 (623)
37 KOG4341 F-box protein containi 98.5 5.3E-09 1.1E-13 98.9 -4.3 143 327-502 317-460 (483)
38 PF13855 LRR_8: Leucine rich r 98.5 1.7E-07 3.7E-12 66.4 3.9 54 137-190 3-59 (61)
39 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 3.8E-12 66.3 3.4 60 109-170 1-61 (61)
40 PLN03150 hypothetical protein; 98.4 5.4E-07 1.2E-11 95.6 8.4 104 159-273 419-526 (623)
41 KOG1859 Leucine-rich repeat pr 98.3 5E-09 1.1E-13 105.5 -9.3 127 136-275 165-292 (1096)
42 KOG3665 ZYG-1-like serine/thre 98.2 3.2E-07 7E-12 97.0 1.2 129 84-214 120-261 (699)
43 PF12799 LRR_4: Leucine Rich r 98.2 2.8E-06 6E-11 55.0 4.1 37 136-172 2-38 (44)
44 KOG1909 Ran GTPase-activating 98.2 5.3E-08 1.2E-12 90.2 -5.6 42 328-369 211-252 (382)
45 KOG2120 SCF ubiquitin ligase, 98.2 2.6E-07 5.7E-12 83.8 -1.2 179 136-369 186-374 (419)
46 KOG0531 Protein phosphatase 1, 98.1 1.9E-07 4.2E-12 94.5 -2.6 104 107-214 93-197 (414)
47 KOG2120 SCF ubiquitin ligase, 98.1 4E-08 8.7E-13 89.0 -6.7 63 408-475 311-374 (419)
48 KOG3665 ZYG-1-like serine/thre 98.1 1.9E-06 4.1E-11 91.2 3.2 135 135-274 122-262 (699)
49 KOG0531 Protein phosphatase 1, 98.0 7.7E-07 1.7E-11 90.2 -1.1 126 108-239 71-197 (414)
50 PF12799 LRR_4: Leucine Rich r 98.0 1.2E-05 2.5E-10 52.1 4.5 37 159-195 2-39 (44)
51 KOG1859 Leucine-rich repeat pr 97.8 6E-07 1.3E-11 90.9 -6.2 125 84-214 162-290 (1096)
52 PRK15386 type III secretion pr 97.7 4E-05 8.7E-10 74.9 5.4 60 409-480 51-110 (426)
53 PRK15386 type III secretion pr 97.7 0.00014 3E-09 71.3 8.6 34 328-369 50-83 (426)
54 KOG2982 Uncharacterized conser 97.7 1.2E-05 2.6E-10 73.3 0.5 82 132-213 68-156 (418)
55 KOG4579 Leucine-rich repeat (L 97.6 7E-06 1.5E-10 66.0 -1.8 80 134-213 52-133 (177)
56 KOG1644 U2-associated snRNP A' 97.6 0.00013 2.8E-09 63.0 5.3 84 131-214 60-151 (233)
57 KOG4579 Leucine-rich repeat (L 97.5 1.4E-05 3E-10 64.4 -1.5 109 87-198 28-141 (177)
58 KOG1644 U2-associated snRNP A' 97.4 0.00028 6.1E-09 61.0 5.4 99 136-236 43-148 (233)
59 KOG1909 Ran GTPase-activating 97.3 0.00021 4.6E-09 66.9 3.6 131 107-238 155-308 (382)
60 KOG2982 Uncharacterized conser 97.0 0.00026 5.7E-09 64.8 0.8 20 254-273 241-260 (418)
61 KOG1947 Leucine rich repeat pr 96.9 0.00015 3.2E-09 75.6 -1.8 39 496-534 403-441 (482)
62 KOG2739 Leucine-rich acidic nu 96.8 0.00064 1.4E-08 61.4 2.4 81 157-239 42-127 (260)
63 COG5238 RNA1 Ran GTPase-activa 96.8 0.00039 8.4E-09 62.8 0.9 88 133-221 28-137 (388)
64 KOG1947 Leucine rich repeat pr 96.8 0.00021 4.6E-09 74.4 -1.5 39 328-368 186-224 (482)
65 KOG2123 Uncharacterized conser 96.5 0.00011 2.4E-09 66.6 -4.7 100 134-234 18-123 (388)
66 KOG2123 Uncharacterized conser 96.4 0.00021 4.5E-09 64.8 -3.7 98 107-209 17-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.1 0.0031 6.7E-08 33.8 1.3 22 136-157 1-22 (22)
68 PF00560 LRR_1: Leucine Rich R 96.1 0.0032 7E-08 33.7 1.2 21 181-201 1-21 (22)
69 KOG2739 Leucine-rich acidic nu 96.0 0.003 6.5E-08 57.1 1.7 81 133-213 63-153 (260)
70 KOG3864 Uncharacterized conser 95.2 0.0013 2.7E-08 57.1 -3.8 67 436-507 123-189 (221)
71 PF13504 LRR_7: Leucine rich r 94.6 0.025 5.3E-07 28.1 1.5 16 181-196 2-17 (17)
72 KOG3864 Uncharacterized conser 94.6 0.0088 1.9E-07 52.0 -0.2 90 439-535 102-191 (221)
73 PF13504 LRR_7: Leucine rich r 94.2 0.033 7.1E-07 27.6 1.4 16 136-151 2-17 (17)
74 PF13306 LRR_5: Leucine rich r 94.0 0.25 5.3E-06 40.7 7.4 115 107-230 10-128 (129)
75 PF13306 LRR_5: Leucine rich r 93.7 0.27 5.8E-06 40.5 7.1 106 125-236 2-111 (129)
76 COG5238 RNA1 Ran GTPase-activa 93.3 0.096 2.1E-06 47.9 3.9 136 102-238 85-252 (388)
77 smart00370 LRR Leucine-rich re 90.7 0.22 4.8E-06 27.7 2.0 21 179-199 1-21 (26)
78 smart00369 LRR_TYP Leucine-ric 90.7 0.22 4.8E-06 27.7 2.0 21 179-199 1-21 (26)
79 KOG0473 Leucine-rich repeat pr 90.4 0.0092 2E-07 53.0 -5.7 82 132-213 39-121 (326)
80 smart00369 LRR_TYP Leucine-ric 87.1 0.5 1.1E-05 26.3 1.8 20 135-154 2-21 (26)
81 smart00370 LRR Leucine-rich re 87.1 0.5 1.1E-05 26.3 1.8 20 135-154 2-21 (26)
82 smart00367 LRR_CC Leucine-rich 84.4 0.55 1.2E-05 26.1 1.1 18 519-536 1-18 (26)
83 KOG0473 Leucine-rich repeat pr 79.4 0.055 1.2E-06 48.2 -6.3 60 132-191 62-122 (326)
84 PF13516 LRR_6: Leucine Rich r 73.6 0.93 2E-05 24.6 -0.3 9 160-168 4-12 (24)
85 smart00364 LRR_BAC Leucine-ric 71.9 2.5 5.3E-05 23.6 1.2 18 180-197 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 65.0 5.2 0.00011 22.3 1.6 16 180-195 2-17 (26)
87 smart00368 LRR_RI Leucine rich 47.2 14 0.00031 20.9 1.5 15 158-172 2-16 (28)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-33 Score=298.25 Aligned_cols=207 Identities=30% Similarity=0.402 Sum_probs=163.2
Q ss_pred cccccccccCcchHHHHHHHHHHHHHHHHhhccccccccc-ccCeEeccHHHHHHHHHHhh-----cccceeEEeecccc
Q 040303 2 YGMGLGLFQGINRMEEARARVYTLVYKLKASCMLLEHGSK-NEHWFSMHDVVRDVAIAIAT-----REQNVLTMRYELVN 75 (552)
Q Consensus 2 ~WiaeG~i~~~~~~e~~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~~mHdl~~dla~~i~~-----~e~~~~~~~~~~~~ 75 (552)
+|||||||++....+.+++.|++|+.+|+++++++..... ...+|+|||+|||||.++|+ +|..+.... .+
T Consensus 436 yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~---~~ 512 (889)
T KOG4658|consen 436 YWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG---VG 512 (889)
T ss_pred HHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC---cC
Confidence 7999999998666677999999999999999999987532 34579999999999999998 565333221 22
Q ss_pred cccccCccccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecc-ccccccchh
Q 040303 76 SREWLDEGALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYM-HLSLLPSSL 154 (552)
Q Consensus 76 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i 154 (552)
..+.+....+..+|++++.++.+.. ++....+++|++|.+.++......++..+|..++.||+||+++| .+.++|++|
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~-~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEH-IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred ccccccccchhheeEEEEeccchhh-ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 3445666678889999999999887 77777888999999999864233788888999999999999987 678999999
Q ss_pred cCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCC-cCcccchhhccCCCCCEEeccC
Q 040303 155 GLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGS-YIEQLPVEIGQLTRLRSLDLRD 212 (552)
Q Consensus 155 ~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~ 212 (552)
++|.|||||+++++.+.. |..+++|..|++|++..+ .+..+|..+..|.+||+|.+..
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 999999999999888776 777777777777777766 3344444444567777776644
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=7.1e-30 Score=286.90 Aligned_cols=397 Identities=21% Similarity=0.280 Sum_probs=242.6
Q ss_pred HHHHHHHhhcccccccccccCeEeccHHHHHHHHHHhhccc-------ceeEEee---------cccccc----------
Q 040303 24 TLVYKLKASCMLLEHGSKNEHWFSMHDVVRDVAIAIATREQ-------NVLTMRY---------ELVNSR---------- 77 (552)
Q Consensus 24 ~~~~~L~~~~~~~~~~~~~~~~~~mHdl~~dla~~i~~~e~-------~~~~~~~---------~~~~~~---------- 77 (552)
..++.|+++||++... ++++|||++|+||+++++++. +.+...+ +.....
T Consensus 470 ~~l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hChHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 3488899999998764 679999999999999997653 1110000 000000
Q ss_pred c--c--cCccccCcccEEEeecCCC------cccCCCcc-CC-CCceEEEeecCCCCCcccChhHhhCCCCccEEEeecc
Q 040303 78 E--W--LDEGALKFYTSIVLHDSKM------NVLLPEVL-EC-PQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYM 145 (552)
Q Consensus 78 ~--~--~~~~~~~~lr~L~l~~~~~------~~~~~~~~-~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~ 145 (552)
. + .....+++++.|.+..+.. ...+|..+ .+ ++||.|.+.++... .+|..+ .+.+|+.|++.++
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~--~lP~~f--~~~~L~~L~L~~s 621 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR--CMPSNF--RPENLVKLQMQGS 621 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC--CCCCcC--CccCCcEEECcCc
Confidence 0 0 0112345556666544321 11133322 22 35777777765443 667654 5678888888888
Q ss_pred ccccccchhcCCCCCcEEEccCCC-CCChhhhcCCCCccEEEecCC-cCcccchhhccCCCCCEEeccCCCCCCccCccc
Q 040303 146 HLSLLPSSLGLLTNLRTLCLYCSE-LQDIAVIGELKNLEILCLRGS-YIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNV 223 (552)
Q Consensus 146 ~~~~lp~~i~~l~~L~~L~l~~~~-~~~~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 223 (552)
.+..+|.++..+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|..
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~- 700 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG- 700 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-
Confidence 888888888888888888888876 555556888888888888887 67788888888888888888888888888875
Q ss_pred ccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCC
Q 040303 224 LSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSP 303 (552)
Q Consensus 224 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~ 303 (552)
+ ++++|+.|+++++.... ..+ ....+|+.|++.++.+..+|..+.+++|..|.+.......
T Consensus 701 i-~l~sL~~L~Lsgc~~L~----------~~p---~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~----- 761 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLK----------SFP---DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK----- 761 (1153)
T ss_pred C-CCCCCCEEeCCCCCCcc----------ccc---cccCCcCeeecCCCccccccccccccccccccccccchhh-----
Confidence 3 78888888887554311 011 1245788888888888888887777777777664321000
Q ss_pred CcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC--CCCCcchhhhhh
Q 040303 304 TCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ--APSPKESKRCKE 381 (552)
Q Consensus 304 ~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~~lp~~~~~~~~ 381 (552)
+ . .............+++|+.|++.++.. +.+++.. .+.+++|+.|+|++|. ..+|..
T Consensus 762 -------l--~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~--l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~------ 821 (1153)
T PLN03210 762 -------L--W-ERVQPLTPLMTMLSPSLTRLFLSDIPS--LVELPSS--IQNLHKLEHLEIENCINLETLPTG------ 821 (1153)
T ss_pred -------c--c-ccccccchhhhhccccchheeCCCCCC--ccccChh--hhCCCCCCEEECCCCCCcCeeCCC------
Confidence 0 0 000001111111236777777777765 4455433 3467777888877775 222221
Q ss_pred cccccccceeeeccCCCCCccccccccCCCcccccccce-eeeEeccCCCCccccccCcceEEEEecCCCccccccchhH
Q 040303 382 STSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNV-NVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIV 460 (552)
Q Consensus 382 Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~ 460 (552)
..+++|+.|++++| .+..++. ..++|+.|++.+ +.++.+|. .+
T Consensus 822 -------------------------~~L~sL~~L~Ls~c~~L~~~p~--------~~~nL~~L~Ls~-n~i~~iP~--si 865 (1153)
T PLN03210 822 -------------------------INLESLESLDLSGCSRLRTFPD--------ISTNISDLNLSR-TGIEEVPW--WI 865 (1153)
T ss_pred -------------------------CCccccCEEECCCCCccccccc--------cccccCEeECCC-CCCccChH--HH
Confidence 13556666666666 4433211 224566666655 35555554 35
Q ss_pred hhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccc
Q 040303 461 NSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSF 510 (552)
Q Consensus 461 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 510 (552)
..+++|+.|++.+|++++.++. ....+++|+.+++.+|++|+.+
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccc
Confidence 5666666666666666665532 1223566666666666666544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.6e-28 Score=275.99 Aligned_cols=421 Identities=19% Similarity=0.170 Sum_probs=199.8
Q ss_pred cCcccEEEeecCCCcccCCCc-c-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccc-cccchhcCCCCCc
Q 040303 85 LKFYTSIVLHDSKMNVLLPEV-L-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLS-LLPSSLGLLTNLR 161 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~ 161 (552)
.++++.|++++|.+.+.+|.. + .+++||.|++++|.... .+|. +.+++|++|++++|.+. .+|..++++++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-ccCc---cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 445556666655554334432 2 55566666665554432 3332 23455555555555553 4556666666666
Q ss_pred EEEccCCCCCC--hhhhcCCCCccEEEecCCcCc-ccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 162 TLCLYCSELQD--IAVIGELKNLEILCLRGSYIE-QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 162 ~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
+|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|+++++
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 246 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCc
Confidence 66666666543 556666666666666666544 45666666666666666666544455554 566666666666533
Q ss_pred ccchhhhhhhcccccChhhhcCCCCCcEEEccCCCC-CcCCCcc-cccCCceEEEEecccccCC--CCCCcccceeeecC
Q 040303 239 NKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDV-NTLPKGL-FFEKLERYRICIGRWCWED--TSPTCSRTFRLLLG 314 (552)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~p~~~-~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~l~ 314 (552)
.. ....+..++.+++|+.|++++|.+ +.+|..+ .+++|+.|.++.+...... ..........+.+.
T Consensus 247 ~l----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 247 NL----------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred ee----------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 22 112344555556666666665553 2344443 4555555555544321110 00111122222222
Q ss_pred cccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC--CCCCcchhhhhhc----------
Q 040303 315 TDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ--APSPKESKRCKES---------- 382 (552)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~~lp~~~~~~~~L---------- 382 (552)
.+............+++|+.|++.++.. ....+. ..+.+++|+.|++++|. +.+|..+..++++
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l--~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKF--SGEIPK--NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCC--cCcCCh--HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 2211111222233445555555554432 111111 11234455555555444 2233222111111
Q ss_pred -------ccccc-cceeeeccCCCCCccccccc------------------------cCCCcccccccceeeeEeccCCC
Q 040303 383 -------TSEMR-SNEIILEDHVNVPNTFFLKG------------------------GLPNLETLELYNVNVERIWKSQL 430 (552)
Q Consensus 383 -------i~~c~-l~~l~~~~~~~~~~~~~~~~------------------------~~~~L~~L~l~~~~l~~~~~~~~ 430 (552)
+..|. ++.+...........+.... .+++|+.|++.+|.+........
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 01111 12221111100001111122 33444444444443221111100
Q ss_pred CccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccc
Q 040303 431 PAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSF 510 (552)
Q Consensus 431 ~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 510 (552)
..++|+.|++++|.-...+|. .+..+++|+.|++.+|.-...+ ++ ....+++|+.|+|.+|.-...+
T Consensus 473 -----~~~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~--p~----~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 473 -----GSKRLENLDLSRNQFSGAVPR--KLGSLSELMQLKLSENKLSGEI--PD----ELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred -----ccccceEEECcCCccCCccCh--hhhhhhccCEEECcCCcceeeC--Ch----HHcCccCCCEEECCCCcccccC
Confidence 234566666665533333333 3566777777777776433232 11 2334788888888888544444
Q ss_pred cCCcccccCCCccEEEeecCCCcchhhcc
Q 040303 511 CTGDVHIEFPTLETLEVIRCPEFLLTAHD 539 (552)
Q Consensus 511 ~~~~~~~~~~~L~~L~i~~C~~L~~l~~~ 539 (552)
|. .+ ..+++|+.|++++|.-...+|..
T Consensus 540 p~-~~-~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 540 PA-SF-SEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred Ch-hH-hCcccCCEEECCCCcccccCChh
Confidence 43 23 26789999999988776666643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=6e-28 Score=271.32 Aligned_cols=425 Identities=18% Similarity=0.162 Sum_probs=276.6
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccc-cccchhcCCCCCcE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLS-LLPSSLGLLTNLRT 162 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~ 162 (552)
..+++|+|++++|.+.+.+|. ..+++|++|++++|.... .+|..+ +++++|++|++++|.+. .+|..++++++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~-~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSG-EIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccc-cCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 467899999999988764553 468899999999987653 567665 89999999999999875 68889999999999
Q ss_pred EEccCCCCCC--hhhhcCCCCccEEEecCCcCc-ccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccc
Q 040303 163 LCLYCSELQD--IAVIGELKNLEILCLRGSYIE-QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFN 239 (552)
Q Consensus 163 L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (552)
|++++|.+.. |..++++.+|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|+.|++.++.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCe
Confidence 9999998764 788999999999999999776 78888999999999999998755667766 7899999999987443
Q ss_pred cchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC-cCCCcc-cccCCceEEEEecccccCC--CCCCcccceeeecCc
Q 040303 240 KWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN-TLPKGL-FFEKLERYRICIGRWCWED--TSPTCSRTFRLLLGT 315 (552)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~~-~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~l~~ 315 (552)
. ....+..+..+++|+.|++++|.+. .+|..+ .+++|+.|.+..+.+.... ......+...+.+..
T Consensus 272 l----------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 272 L----------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred e----------eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 2 1123445666667777777666633 445444 5566666666554422110 011111222222222
Q ss_pred ccccccchhHHHHhchheeeeecCCCCCc----------------------ceeeeccccCcccccccEEEeecCC--CC
Q 040303 316 DNCISFKSGHIVQLQRIEDLCLSGLPDQD----------------------IIELVNNKLGSYSSQLKHLWVEGCQ--AP 371 (552)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------------~~~~~~~~~~~~~~~L~~L~l~~c~--~~ 371 (552)
+............+++|+.|++.++.-.. ....+. ....+++|+.|++.+|. +.
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeE
Confidence 21111111222334555555554433200 001111 12346677777777776 34
Q ss_pred CCcchhhhhhc----ccccc--------------cceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCcc
Q 040303 372 SPKESKRCKES----TSEMR--------------SNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAM 433 (552)
Q Consensus 372 lp~~~~~~~~L----i~~c~--------------l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 433 (552)
+|..+..++.| ++.+. ++.+...........+ .....++|+.|++++|.+.........
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~~~L~~L~ls~n~l~~~~~~~~~-- 496 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLG-- 496 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC-cccccccceEEECcCCccCCccChhhh--
Confidence 55554444443 22221 2222222111111111 112357899999999976543322222
Q ss_pred ccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCC
Q 040303 434 SCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTG 513 (552)
Q Consensus 434 ~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 513 (552)
.+++|+.|++++|.-...+|. .+..+++|++|++++|.--..+ +. ....+++|+.|++.+|.-...+|..
T Consensus 497 --~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~--p~----~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 497 --SLSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQI--PA----SFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred --hhhccCEEECcCCcceeeCCh--HHcCccCCCEEECCCCcccccC--Ch----hHhCcccCCEEECCCCcccccCChh
Confidence 789999999999855556665 4788999999999998744333 22 2345899999999999766667654
Q ss_pred cccccCCCccEEEeecCCCcchhhcc
Q 040303 514 DVHIEFPTLETLEVIRCPEFLLTAHD 539 (552)
Q Consensus 514 ~~~~~~~~L~~L~i~~C~~L~~l~~~ 539 (552)
. ..+++|+.|++++|+-...+|..
T Consensus 567 l--~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 567 L--GNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred H--hcCcccCEEeccCCcceeeCCCc
Confidence 2 26899999999999977777743
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.6e-23 Score=232.94 Aligned_cols=342 Identities=23% Similarity=0.331 Sum_probs=216.8
Q ss_pred CCCCceEEEeecCCCC-----CcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCC
Q 040303 107 ECPQLQLLSLWTEKSS-----LITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELK 180 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~-----~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~ 180 (552)
.+++|+.|.++.+... ...+|.++..-...||+|++.++.++.+|..+ ...+|++|++.++.+.. +..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 6777777777543211 11345554222345777777777777777666 46777777777777666 56667777
Q ss_pred CccEEEecCC-cCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhc
Q 040303 181 NLEILCLRGS-YIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELK 259 (552)
Q Consensus 181 ~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 259 (552)
+|++|+++++ .+..+| .++.+++|++|++.+|..+..+|.. ++++++|+.|++.++.... ..+..+
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~----------~Lp~~i- 701 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE----------ILPTGI- 701 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC----------ccCCcC-
Confidence 7777777766 455665 4666777777777777767777766 6777777777776443211 111111
Q ss_pred CCCCCcEEEccCCC-CCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeec
Q 040303 260 RLPNLTTLELCIPD-VNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLS 338 (552)
Q Consensus 260 ~l~~L~~L~l~~~~-~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 338 (552)
++++|+.|++++|. +..+|.. ..+|+.|.+..+.. ..+|... .+++|++|.+.
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i----------------------~~lP~~~--~l~~L~~L~l~ 755 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI----------------------EEFPSNL--RLENLDELILC 755 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc----------------------ccccccc--ccccccccccc
Confidence 56677777777664 3444432 24555555533221 0111111 24566666666
Q ss_pred CCCCCcceeeec---cccCcccccccEEEeecCC--CCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcc
Q 040303 339 GLPDQDIIELVN---NKLGSYSSQLKHLWVEGCQ--APSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLE 413 (552)
Q Consensus 339 ~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~--~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~ 413 (552)
++....+..... ......+++|+.|++++|+ ..+|. ..+++++|+
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~------------------------------si~~L~~L~ 805 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS------------------------------SIQNLHKLE 805 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccCh------------------------------hhhCCCCCC
Confidence 544311111000 0011234677888887775 22232 336788999
Q ss_pred cccccce-eeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccc
Q 040303 414 TLELYNV-NVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVV 492 (552)
Q Consensus 414 ~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 492 (552)
.|+|.+| .+..++... .+++|+.|++++|..+..+|. ..++|++|++.++ .++.++ . .+..
T Consensus 806 ~L~Ls~C~~L~~LP~~~------~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP--~----si~~ 867 (1153)
T PLN03210 806 HLEIENCINLETLPTGI------NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVP--W----WIEK 867 (1153)
T ss_pred EEECCCCCCcCeeCCCC------CccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccCh--H----HHhc
Confidence 9999998 777765432 578999999999999888865 2478999998875 466653 2 3445
Q ss_pred cCCccEEEeccccccccccCCcccccCCCccEEEeecCCCcchhhc
Q 040303 493 FPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEFLLTAH 538 (552)
Q Consensus 493 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~ 538 (552)
+++|+.|++.+|++++.++... ..+++|+.+.+.+|++|+.++.
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCcccccccC
Confidence 9999999999999999997753 3689999999999999987764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.6e-25 Score=217.48 Aligned_cols=318 Identities=20% Similarity=0.271 Sum_probs=221.4
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
...++.||++.+|++.........++.||++++..|...-..+|.++| +++-|.+|||+.|.+.+.|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 467789999999998875556678999999999988776668999985 8999999999999999999999999999999
Q ss_pred EccCCCCCC-h-hhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccc
Q 040303 164 CLYCSELQD-I-AVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKW 241 (552)
Q Consensus 164 ~l~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (552)
+|++|+|.. | +-+.+|.-|-.||+++|++..+|+.+.+|.+|++|.+++|. +..+.-..+..|++|++|++++...
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqR- 209 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQR- 209 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccc-
Confidence 999999988 6 56779999999999999999999999999999999999987 4444433366778888888874433
Q ss_pred hhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccCCceEEEEecccccCCCCCCcccceeeecCcccccc
Q 040303 242 EVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCIS 320 (552)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 320 (552)
+....+..+..+.||+.++++.|.+..+|.-+ .+.+|++|+++++.. ..+.+.
T Consensus 210 --------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i------------teL~~~------ 263 (1255)
T KOG0444|consen 210 --------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI------------TELNMT------ 263 (1255)
T ss_pred --------hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce------------eeeecc------
Confidence 23346778889999999999999998888875 777777777654431 111111
Q ss_pred cchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC---CCCCcchhhhhhcccccccceeeeccCC
Q 040303 321 FKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ---APSPKESKRCKESTSEMRSNEIILEDHV 397 (552)
Q Consensus 321 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~---~~lp~~~~~~~~Li~~c~l~~l~~~~~~ 397 (552)
.....+|++|.++...-+.+++.. -.+++|++|...++. ..+|+.+
T Consensus 264 -----~~~W~~lEtLNlSrNQLt~LP~av-----cKL~kL~kLy~n~NkL~FeGiPSGI--------------------- 312 (1255)
T KOG0444|consen 264 -----EGEWENLETLNLSRNQLTVLPDAV-----CKLTKLTKLYANNNKLTFEGIPSGI--------------------- 312 (1255)
T ss_pred -----HHHHhhhhhhccccchhccchHHH-----hhhHHHHHHHhccCcccccCCccch---------------------
Confidence 012245555555554432222222 234555655555554 2333333
Q ss_pred CCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCch
Q 040303 398 NVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPIL 477 (552)
Q Consensus 398 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l 477 (552)
|.+-+|+.+...++.++-++.+.. .++.|+.|.+. |+.|-.+|. .++-++-|+.|++...++|
T Consensus 313 ---------GKL~~Levf~aanN~LElVPEglc-----RC~kL~kL~L~-~NrLiTLPe--aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 313 ---------GKLIQLEVFHAANNKLELVPEGLC-----RCVKLQKLKLD-HNRLITLPE--AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ---------hhhhhhHHHHhhccccccCchhhh-----hhHHHHHhccc-ccceeechh--hhhhcCCcceeeccCCcCc
Confidence 445555555555555544443332 44555555553 355555554 3555555666666555555
Q ss_pred h
Q 040303 478 E 478 (552)
Q Consensus 478 ~ 478 (552)
.
T Consensus 376 V 376 (1255)
T KOG0444|consen 376 V 376 (1255)
T ss_pred c
Confidence 3
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.4e-24 Score=210.91 Aligned_cols=177 Identities=22% Similarity=0.310 Sum_probs=131.6
Q ss_pred ccCcccEEEeecCCCc-ccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMN-VLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~-~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 161 (552)
.++-+|-+++++|.++ +.+|... .+..++.|.+...... .+|+++ +.+.+|..|.+..|++..+...++.|+.||
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh--hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 4566788888888877 3456554 7888888888765544 678776 778888888888888777777778888888
Q ss_pred EEEccCCCCCC---hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 162 TLCLYCSELQD---IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 162 ~L~l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
.+.++.|+++. |..|-+|.-|.+||+++|++++.|.++..-+++-.|+++.|. ++.+|...+-+++.|-.|+++++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc
Confidence 88888887654 777888888888888888888888888888888888888766 77777766667777777777644
Q ss_pred ccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC
Q 040303 239 NKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN 275 (552)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 275 (552)
.. +..+..+..+.+|++|.+++|.+.
T Consensus 161 rL-----------e~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 161 RL-----------EMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hh-----------hhcCHHHHHHhhhhhhhcCCChhh
Confidence 32 225566777777777777777643
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2e-21 Score=187.90 Aligned_cols=148 Identities=22% Similarity=0.263 Sum_probs=70.9
Q ss_pred cCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCCcE
Q 040303 85 LKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLRT 162 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~ 162 (552)
+...+.|++++|.+...-...+ ++++|+.+.+.+|... .+|... ....+|..|+|.+|.|.++. +.++-++.||.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh--hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 3445566776666655222222 6666666666655443 444422 22334555555555444332 23444455555
Q ss_pred EEccCCCCCC-h-hhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 163 LCLYCSELQD-I-AVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 163 L~l~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
|||+.|.+.. + +++..=.++++|++++|.|+.+-. .+..+.+|-.|.++.|+ +..+|...+++|++|+.|++.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcc
Confidence 5555555444 2 334444445555555554444322 24444455555555444 444444434445555555443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-20 Score=181.80 Aligned_cols=361 Identities=19% Similarity=0.191 Sum_probs=260.9
Q ss_pred cCcccEEEeecCCCcccCC---CccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCc
Q 040303 85 LKFYTSIVLHDSKMNVLLP---EVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLR 161 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 161 (552)
.-..+-|+.+++.+...-. ..+-.+..++|++++|... ++....|.++++|+.+.+.+|.++.+|...+...||+
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~--~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS--HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLE 128 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeeccccccc--cCcHHHHhcCCcceeeeeccchhhhccccccccccee
Confidence 3445677777777654111 1123457788999999876 6777778999999999999999999999988899999
Q ss_pred EEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 162 TLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 162 ~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
.|+|.+|.|.. -+.+.-++.|++||++.|.|+.+|.. +.+=.++++|++++|. ++.+..+.+..+.+|.+|.++.+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC
Confidence 99999999887 57889999999999999999887753 5555789999999987 78877766888999999999866
Q ss_pred ccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc-c-cccCCceEEEEeccccc--CCCCCCcccceeeecC
Q 040303 239 NKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG-L-FFEKLERYRICIGRWCW--EDTSPTCSRTFRLLLG 314 (552)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~-~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~l~ 314 (552)
..-+ .....+++|++|+.|++..|.+....-. + ++++|+.|.+..++.+. ...++...+.-.+.+.
T Consensus 208 ritt----------Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 208 RITT----------LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred cccc----------cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 5422 2456688899999999998887655332 2 77778878776666322 1234455666666666
Q ss_pred cccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC-CCCCcch----hhhhhc-cccccc
Q 040303 315 TDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ-APSPKES----KRCKES-TSEMRS 388 (552)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~----~~~~~L-i~~c~l 388 (552)
.++-.....++...++.|+.|+++.....++.. ..| ...++|+.|+++++. ..++... ..+..| +++.++
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~-d~W---sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI-DSW---SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeec-chh---hhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 665556667777789999999998766533321 111 247899999999988 4555432 222222 223223
Q ss_pred ceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccce
Q 040303 389 NEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQH 468 (552)
Q Consensus 389 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~ 468 (552)
..+-. +....+.+|++|++.++.+.-..+....+.. ++++|+.|.+.+ ++++.+|.. -+..+++|++
T Consensus 354 ~~l~e----------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~-gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~ 420 (873)
T KOG4194|consen 354 DHLAE----------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFN-GLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEH 420 (873)
T ss_pred HHHHh----------hHHHHhhhhhhhcCcCCeEEEEEecchhhhc-cchhhhheeecC-ceeeecchh-hhccCcccce
Confidence 33321 1224678999999999976543333322223 699999999988 799999874 4778899999
Q ss_pred EEEecCC
Q 040303 469 LEIDECP 475 (552)
Q Consensus 469 L~i~~c~ 475 (552)
|++.+..
T Consensus 421 LdL~~Na 427 (873)
T KOG4194|consen 421 LDLGDNA 427 (873)
T ss_pred ecCCCCc
Confidence 9999876
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=9e-23 Score=188.72 Aligned_cols=419 Identities=21% Similarity=0.199 Sum_probs=239.0
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
....+.++.+++|......|+..++.++..|+++++... .+|+.+ .++..|+.|+.+++.+..+|++++.+..|..+
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls--~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS--ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh--hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 344566777777777763334446777777777777655 677776 67777788888887777777778777777777
Q ss_pred EccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccch
Q 040303 164 CLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWE 242 (552)
Q Consensus 164 ~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 242 (552)
+..+|.+.. |+++.++.+|..|++.+++++.+|+..-+++.|++|+...|- ++.+|++ ++.+.+|+.|++..+....
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIRF 220 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhccccc
Confidence 777777766 777777777777777777777766665557777777666544 6666666 5666666666554221111
Q ss_pred hh-----------hhhhcccccChhh-hcCCCCCcEEEccCCCCCcCCCcc-cccCCceEEEEecccccCCCCCCcccce
Q 040303 243 VE-----------VEAAGVKNASLEE-LKRLPNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGRWCWEDTSPTCSRTF 309 (552)
Q Consensus 243 ~~-----------~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 309 (552)
.. ....+.....+.+ ..+++.|..|++..|+++++|..+ .+++|.+|+++.+..+......++....
T Consensus 221 lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~ 300 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLK 300 (565)
T ss_pred CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceee
Confidence 00 0000011112222 346677777777777777777776 5666777777665533222222222222
Q ss_pred eeecCccccccc-----chhHHHHhc------------------------------------hheeeeecCCCCCcceee
Q 040303 310 RLLLGTDNCISF-----KSGHIVQLQ------------------------------------RIEDLCLSGLPDQDIIEL 348 (552)
Q Consensus 310 ~l~l~~~~~~~~-----~~~~~~~l~------------------------------------~L~~L~l~~~~~~~~~~~ 348 (552)
.+.+.++--... ..+.-..++ +.+.|++++.. +..+
T Consensus 301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q---lt~V 377 (565)
T KOG0472|consen 301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ---LTLV 377 (565)
T ss_pred ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc---cccC
Confidence 222222200000 011111122 22222222221 1122
Q ss_pred eccccC-cccccccEEEeecCC-CCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceeeeEec
Q 040303 349 VNNKLG-SYSSQLKHLWVEGCQ-APSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIW 426 (552)
Q Consensus 349 ~~~~~~-~~~~~L~~L~l~~c~-~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 426 (552)
|..... +.-.-....+++.+. ..+|..+..++.++.. +.. ..+........+..+++|..|+++++-+.+++
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~-----l~l-snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP 451 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD-----LVL-SNNKISFVPLELSQLQKLTFLDLSNNLLNDLP 451 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH-----HHh-hcCccccchHHHHhhhcceeeecccchhhhcc
Confidence 111100 001113344444443 3344443333333111 100 00101112223567899999999999777777
Q ss_pred cCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccc
Q 040303 427 KSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEK 506 (552)
Q Consensus 427 ~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 506 (552)
.+.. .+-.|++|+|+. +.++.+|. ++..+..|+.+-.++ .++..+.. + ++..+.+|..|++.+. .
T Consensus 452 ~e~~-----~lv~Lq~LnlS~-NrFr~lP~--~~y~lq~lEtllas~-nqi~~vd~-~----~l~nm~nL~tLDL~nN-d 516 (565)
T KOG0472|consen 452 EEMG-----SLVRLQTLNLSF-NRFRMLPE--CLYELQTLETLLASN-NQIGSVDP-S----GLKNMRNLTTLDLQNN-D 516 (565)
T ss_pred hhhh-----hhhhhheecccc-cccccchH--HHhhHHHHHHHHhcc-ccccccCh-H----HhhhhhhcceeccCCC-c
Confidence 6554 667799999988 48888876 455566666655554 45666532 2 3556899999999975 7
Q ss_pred cccccCCcccccCCCccEEEeecCCCc
Q 040303 507 LTSFCTGDVHIEFPTLETLEVIRCPEF 533 (552)
Q Consensus 507 L~~~~~~~~~~~~~~L~~L~i~~C~~L 533 (552)
++.+|... .++.+|++|.+.|-|-=
T Consensus 517 lq~IPp~L--gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQQIPPIL--GNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhCChhh--ccccceeEEEecCCccC
Confidence 88887643 48999999999997653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=5.4e-22 Score=183.60 Aligned_cols=193 Identities=23% Similarity=0.305 Sum_probs=112.0
Q ss_pred CcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEc
Q 040303 86 KFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCL 165 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l 165 (552)
.+++.++++.+++....+++..+..+..|+..+|... .+|.++ .++.+|..|++.++.++++|+..-.++.|+.||.
T Consensus 114 ~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~--slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS--SLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhhccccceeecCchHHHHhhhhhhhccccccc--cCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence 3344455555554442223334444444444444433 455554 3455555555555555555554444555555555
Q ss_pred cCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 166 YCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 166 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
..|.+.. |+.++.+.+|..|++..+++..+| +|..+..|..|+++.|. ++-+|.+..+++++|.+||+.++.
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk----- 263 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK----- 263 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-----
Confidence 5555554 555555555555555555555555 55555555555555544 555666655567777777776433
Q ss_pred hhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccCCceEEEEecc
Q 040303 245 VEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGR 295 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~ 295 (552)
..+.+.++..+.+|.+|++++|++..+|..+ .+ .|+.|.+.+++
T Consensus 264 ------lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 264 ------LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ------cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 2346777888888888999988888888776 44 77777666544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=7e-21 Score=193.66 Aligned_cols=382 Identities=21% Similarity=0.176 Sum_probs=199.8
Q ss_pred ceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecC
Q 040303 111 LQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRG 189 (552)
Q Consensus 111 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~ 189 (552)
|++|++++|... ..|..+ ..+.+|+.|.++.|.+.+.|.+++++.+|++|+|.++.+.. |.++..+++|++|++++
T Consensus 47 L~~l~lsnn~~~--~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS--SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc--cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 555555555433 444444 45555555555555555555555555556666555555544 55555555556666555
Q ss_pred CcCcccchhhccCCCCCEEecc-------------------CCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcc
Q 040303 190 SYIEQLPVEIGQLTRLRSLDLR-------------------DCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGV 250 (552)
Q Consensus 190 ~~l~~lp~~i~~l~~L~~L~l~-------------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 250 (552)
+.+..+|.-+..++.+..+.++ .+.....++.+ +..+++ .|++..+..
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~---------- 190 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEM---------- 190 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhhhe--eeecccchh----------
Confidence 5555555544444444444444 33333344443 344443 355543322
Q ss_pred cccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhc
Q 040303 251 KNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQ 330 (552)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~ 330 (552)
....+..+.+|+.+....|.+..+. +.-++|+.|..+.+........+-......+.+..+....+|.|+ ..+.
T Consensus 191 ---~~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi-~~~~ 264 (1081)
T KOG0618|consen 191 ---EVLDLSNLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWI-GACA 264 (1081)
T ss_pred ---hhhhhhhccchhhhhhhhcccceEE--ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHH-Hhcc
Confidence 1233444455555544444433221 122344444443333221111222233333444444444445333 2345
Q ss_pred hheeeeecCCCCC--------------------cceeeeccccCcccccccEEEeecCC-CCCCcchhh-----hhhc--
Q 040303 331 RIEDLCLSGLPDQ--------------------DIIELVNNKLGSYSSQLKHLWVEGCQ-APSPKESKR-----CKES-- 382 (552)
Q Consensus 331 ~L~~L~l~~~~~~--------------------~~~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~~~-----~~~L-- 382 (552)
+|+.+.+....-+ +++.+++ ....+.+|++|++..+. ..+|..+.. +..+
T Consensus 265 nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~--~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 265 NLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP--FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred cceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC--cccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 5555544432221 1222332 22457889999998877 555553311 1111
Q ss_pred -------------ccccccceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCC
Q 040303 383 -------------TSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCG 449 (552)
Q Consensus 383 -------------i~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~ 449 (552)
-..|.+..+...+.......+..+.++++||.|+++++.+.+++..... .++.|++|++++ +
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSG-N 417 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSG-N 417 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh----chHHhHHHhccc-c
Confidence 0011133333334444455566667788888888888877776665544 677888888887 6
Q ss_pred CccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeec
Q 040303 450 ELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIR 529 (552)
Q Consensus 450 ~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~ 529 (552)
+|+.+|. .+..+..|+.|...+. +|..++ ....++.|+.++++ |.+|......... ..|.|++|+++|
T Consensus 418 kL~~Lp~--tva~~~~L~tL~ahsN-~l~~fP-------e~~~l~qL~~lDlS-~N~L~~~~l~~~~-p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 418 KLTTLPD--TVANLGRLHTLRAHSN-QLLSFP-------ELAQLPQLKVLDLS-CNNLSEVTLPEAL-PSPNLKYLDLSG 485 (1081)
T ss_pred hhhhhhH--HHHhhhhhHHHhhcCC-ceeech-------hhhhcCcceEEecc-cchhhhhhhhhhC-CCcccceeeccC
Confidence 7888875 4667777777766553 344442 23448889999988 4566665322111 237999999998
Q ss_pred CCCc
Q 040303 530 CPEF 533 (552)
Q Consensus 530 C~~L 533 (552)
-+++
T Consensus 486 N~~l 489 (1081)
T KOG0618|consen 486 NTRL 489 (1081)
T ss_pred Cccc
Confidence 8764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=5.8e-19 Score=179.85 Aligned_cols=392 Identities=19% Similarity=0.212 Sum_probs=219.1
Q ss_pred EEeecCCCcccCCCc-cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCC
Q 040303 91 IVLHDSKMNVLLPEV-LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSE 169 (552)
Q Consensus 91 L~l~~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 169 (552)
++++...+.- +|.. .....+..|++..|-.. ..|-++..+.-+|+.||++++.+..+|..|..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~~-ip~~i~~~~~~~~ln~~~N~~l--~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLEL-IPEQILNNEALQILNLRRNSLL--SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcc-cchhhccHHHHHhhhccccccc--cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence 3444444444 4432 23334777777766443 555565566667999999999999999999999999999999999
Q ss_pred CCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhh
Q 040303 170 LQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAA 248 (552)
Q Consensus 170 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 248 (552)
+.. |.++.++.+|++|.|.++.+..+|.++..+++|++|+++.|. ...+|.. +..++.++.+..+++..
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~-------- 149 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEK-------- 149 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchh--------
Confidence 887 999999999999999999999999999999999999999987 7788876 67777777777664421
Q ss_pred cccccChhhhcCCCCCcEEEccCCC-CCcCCCcc-cccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHH
Q 040303 249 GVKNASLEELKRLPNLTTLELCIPD-VNTLPKGL-FFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHI 326 (552)
Q Consensus 249 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 326 (552)
...++... ++++++..+. ...++.++ .++. .+.+.++... ........+.-.+....+.-.. ..
T Consensus 150 ------~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~----l~ 215 (1081)
T KOG0618|consen 150 ------IQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSE----LE 215 (1081)
T ss_pred ------hhhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccce----EE
Confidence 11222222 3444444333 22222222 1222 2333322211 0000000000000000000000 00
Q ss_pred HHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC-CCCCcchhhhhhcccccccceeeeccCCCCCccccc
Q 040303 327 VQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ-APSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFL 405 (552)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~ 405 (552)
..-++|+.|+...++-+ ... ......+|++++|+.+. ..+|.|.+.|.++ +.+.. ..+....++..
T Consensus 216 ~~g~~l~~L~a~~n~l~--~~~----~~p~p~nl~~~dis~n~l~~lp~wi~~~~nl------e~l~~-n~N~l~~lp~r 282 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLT--TLD----VHPVPLNLQYLDISHNNLSNLPEWIGACANL------EALNA-NHNRLVALPLR 282 (1081)
T ss_pred ecCcchheeeeccCcce--eec----cccccccceeeecchhhhhcchHHHHhcccc------eEecc-cchhHHhhHHH
Confidence 01256777777777652 111 11245678888888877 5677777666665 11110 00111111122
Q ss_pred cccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccch------------------------hHh
Q 040303 406 KGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSS------------------------IVN 461 (552)
Q Consensus 406 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~------------------------~~~ 461 (552)
.....+|+.|.+..|+++.++.... .+.+|++|++.. +++.++|+.. .-.
T Consensus 283 i~~~~~L~~l~~~~nel~yip~~le-----~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~ 356 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNELEYIPPFLE-----GLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN 356 (1081)
T ss_pred HhhhhhHHHHHhhhhhhhhCCCccc-----ccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccch
Confidence 2234455555555555544433322 345555555544 3444444311 112
Q ss_pred hhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecCCCcchhh
Q 040303 462 SFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEFLLTA 537 (552)
Q Consensus 462 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 537 (552)
..+.|+.|++.+.. +++- .-..+..++.||.|++.+. .|.++|...+. +++.|++|.++| .+|+.+|
T Consensus 357 ~~~~Lq~LylanN~-Ltd~-----c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~-kle~LeeL~LSG-NkL~~Lp 423 (1081)
T KOG0618|consen 357 NHAALQELYLANNH-LTDS-----CFPVLVNFKHLKVLHLSYN-RLNSFPASKLR-KLEELEELNLSG-NKLTTLP 423 (1081)
T ss_pred hhHHHHHHHHhcCc-cccc-----chhhhccccceeeeeeccc-ccccCCHHHHh-chHHhHHHhccc-chhhhhh
Confidence 23344444444322 1111 0013445677777777764 66777665443 677777777777 4666666
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.9e-18 Score=141.86 Aligned_cols=164 Identities=28% Similarity=0.428 Sum_probs=143.8
Q ss_pred CCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCC
Q 040303 102 LPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELK 180 (552)
Q Consensus 102 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~ 180 (552)
++..+.+.++..|.+++|... .+|+.+ ..+++|++|++.+|.++++|.+|+.+++||.|++.-|++.. |..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~--~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT--VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCcee--ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 677778888888999988776 688887 88999999999999999999999999999999999998776 99999999
Q ss_pred CccEEEecCCcCc--ccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhh
Q 040303 181 NLEILCLRGSYIE--QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEEL 258 (552)
Q Consensus 181 ~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 258 (552)
.|++||+.++++. .+|..+..++.||.|++++|. .+-+|++ ++++++||.|.+..+... ..+.++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll-----------~lpkei 169 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL-----------SLPKEI 169 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh-----------hCcHHH
Confidence 9999999999776 789888899999999999977 7889998 799999999998744332 267889
Q ss_pred cCCCCCcEEEccCCCCCcCCCcc
Q 040303 259 KRLPNLTTLELCIPDVNTLPKGL 281 (552)
Q Consensus 259 ~~l~~L~~L~l~~~~~~~~p~~~ 281 (552)
+.+..|++|.|.+|.+..+|..+
T Consensus 170 g~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHhcccceeeecChhh
Confidence 99999999999999998888765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=4.5e-14 Score=148.64 Aligned_cols=113 Identities=24% Similarity=0.371 Sum_probs=55.3
Q ss_pred EEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCC
Q 040303 90 SIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSE 169 (552)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 169 (552)
.|+++.+.+.. +|... .++|+.|.+.+|... .+|. .+++|++|++++|.++.+|.. ..+|++|++++|.
T Consensus 205 ~LdLs~~~Lts-LP~~l-~~~L~~L~L~~N~Lt--~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLTT-LPDCL-PAHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCCc-CCcch-hcCCCEEEccCCcCC--CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 45555555544 44322 134555555555433 3442 234555555555555555532 2455555555555
Q ss_pred CCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccC
Q 040303 170 LQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIP 220 (552)
Q Consensus 170 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 220 (552)
+.. |.. ..+|+.|++++|+++.+|.. +++|++|++++|. +..+|
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp 318 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLP 318 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCC
Confidence 544 221 23455555555555555532 2455555555554 44444
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.3e-16 Score=131.23 Aligned_cols=155 Identities=28% Similarity=0.447 Sum_probs=136.0
Q ss_pred cCccccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCC
Q 040303 80 LDEGALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTN 159 (552)
Q Consensus 80 ~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~ 159 (552)
+..-...++.+|.+++|.+...-|....+.+|++|++++|... ++|.++ ++++.||.|+++.|++..+|.++|.++-
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhh-hhchhhhheecchhhhhcCccccCCCch
Confidence 3334567889999999999884455569999999999998766 899998 8999999999999999999999999999
Q ss_pred CcEEEccCCCCCC---hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 160 LRTLCLYCSELQD---IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 160 L~~L~l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
|++||+.+|.+.+ |..|--+.-|+.|.++.+.+..+|.+++++++||.|.+.+|. +-++|.+ ++.++.|++|++.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcc
Confidence 9999999999765 777777788888999999999999999999999999999987 7789988 8999999999987
Q ss_pred ccc
Q 040303 237 SFN 239 (552)
Q Consensus 237 ~~~ 239 (552)
++.
T Consensus 182 gnr 184 (264)
T KOG0617|consen 182 GNR 184 (264)
T ss_pred cce
Confidence 554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=7.5e-14 Score=147.86 Aligned_cols=114 Identities=26% Similarity=0.317 Sum_probs=65.0
Q ss_pred CceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEec
Q 040303 110 QLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLR 188 (552)
Q Consensus 110 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~ 188 (552)
+...|.+.++... .+|..+ .++|+.|++++|.++.+|..+. .+|++|++++|.++. |..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt--sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT--TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC--cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3455666554433 455443 2456666666666666665543 466666666666655 44332 356666666
Q ss_pred CCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 189 GSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 189 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
+|.+..+|..+. .+|+.|++++|. +..+|.. +. ++|+.|+++++
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N 293 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDN 293 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCC
Confidence 666666665543 356666666554 5556554 22 46666666543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=7.7e-14 Score=147.75 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=90.4
Q ss_pred CCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCC
Q 040303 135 TQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDC 213 (552)
Q Consensus 135 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 213 (552)
.+...|+++++.++.+|..+. .+|+.|++++|.++. |..+. .+|++|++++|+++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 456788888888888887653 578888888888777 65554 478888888888888887654 46888888887
Q ss_pred CCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEe
Q 040303 214 DRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICI 293 (552)
Q Consensus 214 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~ 293 (552)
. +..+|.. +. ++|+.|+++++... ..+..+. ++|+.|++++|.+..+|..+. ..|+.|.+..
T Consensus 252 ~-L~~LP~~-l~--s~L~~L~Ls~N~L~-----------~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp-~sL~~L~Ls~ 313 (754)
T PRK15370 252 R-ITELPER-LP--SALQSLDLFHNKIS-----------CLPENLP--EELRYLSVYDNSIRTLPAHLP-SGITHLNVQS 313 (754)
T ss_pred c-cCcCChh-Hh--CCCCEEECcCCccC-----------ccccccC--CCCcEEECCCCccccCcccch-hhHHHHHhcC
Confidence 6 6677765 33 47888888744321 1122222 478888888887777765431 3445554443
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.49 E-value=2.2e-14 Score=154.15 Aligned_cols=229 Identities=21% Similarity=0.288 Sum_probs=141.8
Q ss_pred ccCcccEEEeecCC--CcccCCC-cc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCC
Q 040303 84 ALKFYTSIVLHDSK--MNVLLPE-VL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTN 159 (552)
Q Consensus 84 ~~~~lr~L~l~~~~--~~~~~~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~ 159 (552)
..+++++|-+..+. +.. ++. ++ .++.||+|++++|.. +..+|.++ +++-+||||+++++.+..+|.++++|+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSS-LSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCc-cCcCChHH-hhhhhhhcccccCCCccccchHHHHHHh
Confidence 34479999999886 444 443 34 899999999998654 34899998 9999999999999999999999999999
Q ss_pred CcEEEccCCC-CCC-hhhhcCCCCccEEEecCCcCcc---cchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEE
Q 040303 160 LRTLCLYCSE-LQD-IAVIGELKNLEILCLRGSYIEQ---LPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELY 234 (552)
Q Consensus 160 L~~L~l~~~~-~~~-~~~i~~L~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 234 (552)
|.|||+..+. +.. +..+..|.+|++|.+.+..... .-..+.++.+|+.+...... . .+-.. +..+..|.++.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-~-~~~e~-l~~~~~L~~~~ 696 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-V-LLLED-LLGMTRLRSLL 696 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-h-HhHhh-hhhhHHHHHHh
Confidence 9999999988 444 4555669999999998765321 12234444445544443222 1 11111 23333333332
Q ss_pred ccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecC
Q 040303 235 IRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLG 314 (552)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~ 314 (552)
..-+.. ..........+..+.+|+.|.|..+.+.++.... .
T Consensus 697 ~~l~~~-------~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~----~---------------------------- 737 (889)
T KOG4658|consen 697 QSLSIE-------GCSKRTLISSLGSLGNLEELSILDCGISEIVIEW----E---------------------------- 737 (889)
T ss_pred Hhhhhc-------ccccceeecccccccCcceEEEEcCCCchhhccc----c----------------------------
Confidence 210000 0011224445566666666666655543222100 0
Q ss_pred cccccccchhHHH-HhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC
Q 040303 315 TDNCISFKSGHIV-QLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 315 ~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
...... .++++..+.+..|...+...|. ...|+|+.|.+..|.
T Consensus 738 -------~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-----~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 738 -------ESLIVLLCFPNLSKVSILNCHMLRDLTWL-----LFAPHLTSLSLVSCR 781 (889)
T ss_pred -------cccchhhhHHHHHHHHhhccccccccchh-----hccCcccEEEEeccc
Confidence 000000 2567777777777763333332 246899999999987
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=1.9e-12 Score=136.47 Aligned_cols=132 Identities=23% Similarity=0.311 Sum_probs=102.4
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
...+++.|++.+|.+.. +|.. .++|++|++++|... .+|. ..++|+.|++++|.+..+|... ..|+.|
T Consensus 220 l~~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lt--sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L 287 (788)
T PRK15387 220 LPAHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLT--SLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKL 287 (788)
T ss_pred hhcCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccC--cccC----cccccceeeccCCchhhhhhch---hhcCEE
Confidence 45689999999999887 7753 589999999998765 6664 2468999999999998887643 678899
Q ss_pred EccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 164 CLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 164 ~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
++++|.++. |.. +++|++|++++|+++.+|... .+|+.|++.+|. +..+|. +. .+|+.|+++++
T Consensus 288 ~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--lp--~~Lq~LdLS~N 352 (788)
T PRK15387 288 WIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT--LP--SGLQELSVSDN 352 (788)
T ss_pred ECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccCc-cccccc--cc--cccceEecCCC
Confidence 999999887 542 478999999999999888633 457788888876 666764 21 46777777644
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=1.9e-12 Score=120.74 Aligned_cols=255 Identities=18% Similarity=0.172 Sum_probs=131.5
Q ss_pred cCcccEEEeecCCCcccCC-Ccc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeec-cccccccch-hcCCCCC
Q 040303 85 LKFYTSIVLHDSKMNVLLP-EVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTY-MHLSLLPSS-LGLLTNL 160 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~-~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp~~-i~~l~~L 160 (552)
+.....+.+..|.+.. +| ..+ .+++||.|++++|.++ .|.++.|..++.|-.|-+.+ |+|+++|+. +++|..|
T Consensus 66 P~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is--~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNIS--FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CCcceEEEeccCCccc-CChhhccchhhhceecccccchh--hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 4444555555555555 33 222 5555666665555544 44444555555554444433 455555543 4555555
Q ss_pred cEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCc------------cCccccc
Q 040303 161 RTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQV------------IPPNVLS 225 (552)
Q Consensus 161 ~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~------------~~~~~l~ 225 (552)
+-|.+.-+.+.- ...+..|++|..|.+..+.+..++. .+..+..++++++..+..+.. .|.. .+
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-ts 221 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TS 221 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cc
Confidence 555555555443 3455555555555555555555554 344555555555444321110 0000 11
Q ss_pred CCCCCcEEEccccc-----------cchhh-----hhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc--cccCCc
Q 040303 226 NLSHLEELYIRSFN-----------KWEVE-----VEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL--FFEKLE 287 (552)
Q Consensus 226 ~l~~L~~L~l~~~~-----------~~~~~-----~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~--~l~~L~ 287 (552)
......-..+.... .++.. .............++.+++|++|++++|++..+.... +...++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 11111000000000 00000 0000011122344889999999999999988887653 677777
Q ss_pred eEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeec
Q 040303 288 RYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEG 367 (552)
Q Consensus 288 ~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 367 (552)
+|.+..+. -.....+++..+..|+.|++++..- +.+. +..+...-.|.+|++-.
T Consensus 302 eL~L~~N~----------------------l~~v~~~~f~~ls~L~tL~L~~N~i---t~~~-~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 302 ELYLTRNK----------------------LEFVSSGMFQGLSGLKTLSLYDNQI---TTVA-PGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hhhcCcch----------------------HHHHHHHhhhccccceeeeecCCee---EEEe-cccccccceeeeeehcc
Confidence 77764432 1222455666778899999888664 3332 23445667888998887
Q ss_pred CC
Q 040303 368 CQ 369 (552)
Q Consensus 368 c~ 369 (552)
++
T Consensus 356 Np 357 (498)
T KOG4237|consen 356 NP 357 (498)
T ss_pred Cc
Confidence 76
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=5.2e-12 Score=123.94 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=5.8
Q ss_pred cCcceEEEEec
Q 040303 437 IQTLTRLIVYG 447 (552)
Q Consensus 437 l~~L~~L~i~~ 447 (552)
+++|+++++.+
T Consensus 277 ~~~L~~l~l~~ 287 (319)
T cd00116 277 KESLLELDLRG 287 (319)
T ss_pred CCCccEEECCC
Confidence 34555555555
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=2.2e-11 Score=113.76 Aligned_cols=107 Identities=22% Similarity=0.332 Sum_probs=88.4
Q ss_pred cccCcccEEEeecCCCcccCCCcc-CCCCceEEEeec-CCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCC
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWT-EKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTN 159 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~ 159 (552)
...+++|+|++++|.++..-|..+ .++.+.+|.+.+ |.+. ++|.+.|.++..|+-|.+.-+.+..+ ...+..+++
T Consensus 88 ~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~--~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT--DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh--hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 457889999999999998666666 888888888887 5444 89999999999999999999988754 456889999
Q ss_pred CcEEEccCCCCCC-h-hhhcCCCCccEEEecCCc
Q 040303 160 LRTLCLYCSELQD-I-AVIGELKNLEILCLRGSY 191 (552)
Q Consensus 160 L~~L~l~~~~~~~-~-~~i~~L~~L~~L~l~~~~ 191 (552)
|+.|.+..|.++. + ..+..+.+++++.+..+.
T Consensus 166 l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 166 LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 9999999998877 4 377888888888766553
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=3.4e-11 Score=118.11 Aligned_cols=84 Identities=26% Similarity=0.258 Sum_probs=45.9
Q ss_pred hhCCCCccEEEeeccccc-----cccchhcCCCCCcEEEccCCCCCC--------hhhhcCCCCccEEEecCCcCc-ccc
Q 040303 131 FRKLTQVRVLDLTYMHLS-----LLPSSLGLLTNLRTLCLYCSELQD--------IAVIGELKNLEILCLRGSYIE-QLP 196 (552)
Q Consensus 131 ~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--------~~~i~~L~~L~~L~l~~~~l~-~lp 196 (552)
+..+..|++|+++++.++ .++..+...+.|++++++++.+.. +..+.++.+|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 355555666666666652 344555566666666666655441 234555666666666666544 233
Q ss_pred hhhccCCC---CCEEeccCCC
Q 040303 197 VEIGQLTR---LRSLDLRDCD 214 (552)
Q Consensus 197 ~~i~~l~~---L~~L~l~~~~ 214 (552)
..+..+.+ |++|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc
Confidence 33333333 6666666554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.5e-10 Score=98.72 Aligned_cols=129 Identities=25% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCCCccEEEeeccccccccchhc-CCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhc-cCCCCCEEec
Q 040303 133 KLTQVRVLDLTYMHLSLLPSSLG-LLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIG-QLTRLRSLDL 210 (552)
Q Consensus 133 ~l~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l 210 (552)
+...+|.|+|+++.++.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|.++.++.++. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445666677666666552 344 466677777777766666666666777777777776666654443 4667777777
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEcc
Q 040303 211 RDCDRLQVIPP-NVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELC 270 (552)
Q Consensus 211 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 270 (552)
++|. +..+.. ..+..+++|+.|++.++.... ........+..+|+|+.||-.
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~-------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE-------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-------STTHHHHHHHH-TT-SEETTE
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCcccc-------hhhHHHHHHHHcChhheeCCE
Confidence 6655 332221 114556666666665443311 111123345556666666543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.4e-11 Score=120.13 Aligned_cols=178 Identities=26% Similarity=0.336 Sum_probs=137.6
Q ss_pred cccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEc
Q 040303 87 FYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCL 165 (552)
Q Consensus 87 ~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l 165 (552)
.....+++.|++.. +|.-+ .+..|..+.++.|.+. .+|..+ .++..|.+|+++.|.+..+|..++.|+ |+.|-+
T Consensus 76 dt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r--~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR--TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhcccccccc-CchHHHHHHHHHHHHHHhccce--ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 34456777777776 66444 6677888888877665 677776 788888888888888888888887664 888888
Q ss_pred cCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 166 YCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 166 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
++|+++. |..|+.+..|..||.+.|.+..+|..++.+.+|+.|++..|. +..+|.+ +..| .|..||++++..
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNki---- 223 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKI---- 223 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCce----
Confidence 8888877 888888888888888888888888888888888888888876 7778877 5654 477888875443
Q ss_pred hhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccc
Q 040303 245 VEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFF 283 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l 283 (552)
...+..+.+|..|++|-+.+|.+..-|..++.
T Consensus 224 -------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 224 -------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred -------eecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 22667788888888888888888887777633
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.8e-10 Score=97.00 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=31.5
Q ss_pred cccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchh-cCCCCCcEEE
Q 040303 87 FYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSL-GLLTNLRTLC 164 (552)
Q Consensus 87 ~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~l~~L~~L~ 164 (552)
++|.|++.++.+.. +.... .+.+|++|++++|... .++. +..+++|++|++++|.++++++.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~-Ie~L~~~l~~L~~L~Ls~N~I~--~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IENLGATLDKLEVLDLSNNQIT--KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-ccchhhhhcCCCEEECCCCCCc--cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45566666666554 43333 3455555555555443 2322 244555555555555555554333 2355555555
Q ss_pred ccCCCCCC---hhhhcCCCCccEEEecCCcCcccch----hhccCCCCCEEec
Q 040303 165 LYCSELQD---IAVIGELKNLEILCLRGSYIEQLPV----EIGQLTRLRSLDL 210 (552)
Q Consensus 165 l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l 210 (552)
+++|.+.+ ...+..+++|++|++.+|.++.-+. -+..+++|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 55555443 3444455555555555554443322 1344444444443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.4e-11 Score=120.27 Aligned_cols=145 Identities=27% Similarity=0.410 Sum_probs=95.6
Q ss_pred cccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEc
Q 040303 87 FYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCL 165 (552)
Q Consensus 87 ~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l 165 (552)
.+..+.++.|.+.. +|... .+..|..|+++.|... .+|..+ +. --|++|.+++|+++.+|..|+.+.+|..|+.
T Consensus 99 ~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS--~lp~~l-C~-lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 99 SLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS--HLPDGL-CD-LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh--cCChhh-hc-CcceeEEEecCccccCCcccccchhHHHhhh
Confidence 34555566666555 44333 6666777777766554 566655 23 3367777777777777777777777777777
Q ss_pred cCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccc
Q 040303 166 YCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFN 239 (552)
Q Consensus 166 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (552)
+.|.+.. |+.++.+.+|+.|.++.+.+..+|..++ .-.|..||++.|+ +..+|.. +.+|+.||+|-+.++.
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNk-is~iPv~-fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCc-eeecchh-hhhhhhheeeeeccCC
Confidence 7777666 6777777777777777777777777766 3456777776654 6677776 6777777777776444
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.6e-10 Score=104.22 Aligned_cols=184 Identities=20% Similarity=0.242 Sum_probs=138.5
Q ss_pred ccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCc--ccChhH-------------------hhCCCCccEEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLI--TLPDNF-------------------FRKLTQVRVLD 141 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~--~~~~~~-------------------~~~l~~Lr~L~ 141 (552)
..+++..+.++.+.-.. +.... .-|-|.++.+.+...... -+|... ....+.|..||
T Consensus 212 ~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred Hhhhhheeeeeccchhh-eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 46677777777765444 33333 446677777665432110 111110 12246789999
Q ss_pred eeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCc
Q 040303 142 LTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPP 221 (552)
Q Consensus 142 l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 221 (552)
+++|.++.+-+++.-++.+|+|++++|++.....+..|++|+.||+++|.+.++-.+-.++-+.+.|.+.+|. ++.+..
T Consensus 291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG 369 (490)
T KOG1259|consen 291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG 369 (490)
T ss_pred ccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh
Confidence 9999999998999999999999999999988777999999999999999888886666788899999999976 777765
Q ss_pred ccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc
Q 040303 222 NVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG 280 (552)
Q Consensus 222 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~ 280 (552)
++++-+|..|++.++..-. ......+++++.|+.+.+.+|.+..++..
T Consensus 370 --L~KLYSLvnLDl~~N~Ie~---------ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 370 --LRKLYSLVNLDLSSNQIEE---------LDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred --hHhhhhheeccccccchhh---------HHHhcccccccHHHHHhhcCCCccccchH
Confidence 7999999999998555422 12456789999999999999998877754
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=5.4e-09 Score=105.66 Aligned_cols=188 Identities=28% Similarity=0.368 Sum_probs=136.7
Q ss_pred EEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCC-CccEEEeeccccccccchhcCCCCCcEEEccCCC
Q 040303 91 IVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLT-QVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSE 169 (552)
Q Consensus 91 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 169 (552)
+....+.+..........+.+..|.+.++... +++... ..+. +|+.|+++++.+..+|..++.+++|+.|+++.|.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~--~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT--DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc--cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 45555554222333445677888888877655 666654 4553 8888888888888888888888889999888888
Q ss_pred CCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhh
Q 040303 170 LQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAA 248 (552)
Q Consensus 170 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 248 (552)
+.+ +...+.+.+|+.|+++++++..+|..+..+..|+.|.+..+. ....+.. ++++.++..+.+.++..
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~-------- 244 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKL-------- 244 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCcee--------
Confidence 887 666668888888888888888888877777778888888875 3344443 67777777777553332
Q ss_pred cccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEec
Q 040303 249 GVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIG 294 (552)
Q Consensus 249 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~ 294 (552)
......++.+++++.|++++|.+..++....+.+++.|.+.+.
T Consensus 245 ---~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 245 ---EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ---eeccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 1124667888889999999999888887447778888877554
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=9e-10 Score=99.43 Aligned_cols=125 Identities=24% Similarity=0.259 Sum_probs=70.6
Q ss_pred CCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhh-hcCCCCccEEE
Q 040303 108 CPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAV-IGELKNLEILC 186 (552)
Q Consensus 108 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-i~~L~~L~~L~ 186 (552)
.+.|.++++++|.+. .+.+++ .-.+.+|+|++++|.+..+- .+..|.+|+.||+++|.+..... =.+|-|.++|.
T Consensus 283 Wq~LtelDLS~N~I~--~iDESv-KL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT--QIDESV-KLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh--hhhhhh-hhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345666666665443 445544 44556666666666655442 25566666666666666555322 23556666666
Q ss_pred ecCCcCcccchhhccCCCCCEEeccCCCCCCccCc-ccccCCCCCcEEEcccc
Q 040303 187 LRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPP-NVLSNLSHLEELYIRSF 238 (552)
Q Consensus 187 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 238 (552)
+++|.+..+ ++++++.+|..|++++|+ ++.+.. ..||+++.|+++.+.++
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence 666666655 466666666666666654 333211 11566666666666543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3e-09 Score=101.10 Aligned_cols=206 Identities=21% Similarity=0.199 Sum_probs=139.9
Q ss_pred ccCcccEEEeecCCCcccCC--Cc-cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch--hcCCC
Q 040303 84 ALKFYTSIVLHDSKMNVLLP--EV-LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS--LGLLT 158 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~--~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~l~ 158 (552)
..+++|.+++.++.+.. .+ .. ..++++|.|++++|-+.-...-..+...+++|+.|+++.|.+....++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 46788888998887765 33 12 279999999999875543233345567899999999999977543222 23678
Q ss_pred CCcEEEccCCCCCC---hhhhcCCCCccEEEecCC-cCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEE
Q 040303 159 NLRTLCLYCSELQD---IAVIGELKNLEILCLRGS-YIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELY 234 (552)
Q Consensus 159 ~L~~L~l~~~~~~~---~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 234 (552)
||+.|.++.|++.. ..-.-.+++|+.|++.+| .+..-.....-+..|+.|++++|..+..-....++.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 99999999999875 345567899999999998 33322223344678999999998755433222268889999888
Q ss_pred ccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc---cccCCceEEEEec
Q 040303 235 IRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL---FFEKLERYRICIG 294 (552)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~---~l~~L~~L~l~~~ 294 (552)
+..+..-... ............+++|+.|++..|.+...++-- .+++|+.|.+..+
T Consensus 278 ls~tgi~si~----~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 278 LSSTGIASIA----EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccCcchhc----CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 8744331111 122223444677889999999999887666542 5667777765443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.6e-08 Score=102.13 Aligned_cols=177 Identities=31% Similarity=0.399 Sum_probs=145.3
Q ss_pred cCcccEEEeecCCCcccCCCcc-CCC-CceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcE
Q 040303 85 LKFYTSIVLHDSKMNVLLPEVL-ECP-QLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRT 162 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~~~-~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 162 (552)
...+..+++.++.+.. ++... ... +|+.|++.++... .+|..+ ..++.|+.|++++|.+.++|...+.+..|+.
T Consensus 115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE--SLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCccccc-Cccccccchhhcccccccccchh--hhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3568899999999988 66655 453 9999999998765 665454 8999999999999999999998889999999
Q ss_pred EEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccc
Q 040303 163 LCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKW 241 (552)
Q Consensus 163 L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (552)
|+++++.+.. |..+..+.+|++|.++++.+...+..+.++.++..|.+.++. +..++.. ++.+.+++.|+++++...
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc
Confidence 9999999998 777778888999999999777888889999999999987766 4444444 789999999999855441
Q ss_pred hhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCC
Q 040303 242 EVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPK 279 (552)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~ 279 (552)
....++.+.+++.|+++++.....+.
T Consensus 269 ------------~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 ------------SISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ------------ccccccccCccCEEeccCccccccch
Confidence 23338899999999999988655443
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=3.3e-10 Score=106.85 Aligned_cols=164 Identities=23% Similarity=0.323 Sum_probs=103.7
Q ss_pred HhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCccccccc
Q 040303 328 QLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKG 407 (552)
Q Consensus 328 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~ 407 (552)
.+..|+.|...++.. +.+.+-+......++|+.|.+..|.. .. + ..+..-..
T Consensus 292 ~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~--------fs----d--------------~~ft~l~r 343 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQ--------FS----D--------------RGFTMLGR 343 (483)
T ss_pred hhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccch--------hh----h--------------hhhhhhhc
Confidence 456788888888777 55555555556778999999988871 00 0 00111113
Q ss_pred cCCCcccccccce-eeeEeccCCCCccccccCcceEEEEecCCCcccccc---chhHhhhcccceEEEecCCchhhhhcc
Q 040303 408 GLPNLETLELYNV-NVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFS---SSIVNSFIRLQHLEIDECPILEEIIVI 483 (552)
Q Consensus 408 ~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~---~~~~~~l~~L~~L~i~~c~~l~~~~~~ 483 (552)
+.+.|+.|++..+ .+..- .+.....+.|.|+.|.+++|...++... ...-.++..|+.+++++||.+++-..
T Consensus 344 n~~~Le~l~~e~~~~~~d~---tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L- 419 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDG---TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL- 419 (483)
T ss_pred CChhhhhhcccccceehhh---hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-
Confidence 5677888888877 33221 1111122778888888888876665410 11234567788899999988766421
Q ss_pred ccccccccccCCccEEEeccccccccccCCcccccCCCccEEEe
Q 040303 484 DQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEV 527 (552)
Q Consensus 484 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i 527 (552)
..+...++||.+++.+|..+..-+...+..++|+++....
T Consensus 420 ----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 420 ----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ----HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 1344578899999999988888777666656666655443
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7e-09 Score=98.63 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=85.5
Q ss_pred CCCCceEEEeecCCCCCcccCh-hHhhCCCCccEEEeeccccc---cccchhcCCCCCcEEEccCCCCCCh---hhhcCC
Q 040303 107 ECPQLQLLSLWTEKSSLITLPD-NFFRKLTQVRVLDLTYMHLS---LLPSSLGLLTNLRTLCLYCSELQDI---AVIGEL 179 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~~~~---~~i~~L 179 (552)
++++||...+.++... ..+. +....++++|.|||++|=+. .+-.-...|++|+.|+++.|.+..| ..-.-+
T Consensus 119 n~kkL~~IsLdn~~V~--~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE--DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCcccc--ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5667777777665443 2221 23356777777777777332 3334456677777777777776542 122356
Q ss_pred CCccEEEecCCcCc--ccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhh
Q 040303 180 KNLEILCLRGSYIE--QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEE 257 (552)
Q Consensus 180 ~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 257 (552)
.+|+.|.+++|.++ .+-.-+..+++|..|++..|..+...... ..-+..|++|+++++.... ......
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~---------~~~~~~ 266 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID---------FDQGYK 266 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc---------cccccc
Confidence 67777777777665 22222344667777777766322211111 2345566666666443311 112334
Q ss_pred hcCCCCCcEEEccCCCCC
Q 040303 258 LKRLPNLTTLELCIPDVN 275 (552)
Q Consensus 258 l~~l~~L~~L~l~~~~~~ 275 (552)
.+.++.|+.|+++.+.+.
T Consensus 267 ~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred cccccchhhhhccccCcc
Confidence 555666666666655543
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=2.7e-07 Score=97.94 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=83.5
Q ss_pred CccEEEeeccccc-cccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCc-ccchhhccCCCCCEEecc
Q 040303 136 QVRVLDLTYMHLS-LLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIE-QLPVEIGQLTRLRSLDLR 211 (552)
Q Consensus 136 ~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~ 211 (552)
.++.|+|+++.+. .+|..++++++|++|++++|.+.. |..++++.+|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778899988876 688889999999999999998865 778999999999999999887 788889999999999999
Q ss_pred CCCCCCccCcccccC-CCCCcEEEcccc
Q 040303 212 DCDRLQVIPPNVLSN-LSHLEELYIRSF 238 (552)
Q Consensus 212 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~ 238 (552)
+|...+.+|.. ++. ..++..+++.++
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 98866778876 454 356677777644
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=5.3e-09 Score=98.90 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=95.1
Q ss_pred HHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCcccccc
Q 040303 327 VQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLK 406 (552)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~ 406 (552)
....+|+.|.+..|.. +.+.-.......++.|+.+++..|.-.. ...+....
T Consensus 317 ~~~~~L~~l~l~~c~~--fsd~~ft~l~rn~~~Le~l~~e~~~~~~--------------------------d~tL~sls 368 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQ--FSDRGFTMLGRNCPHLERLDLEECGLIT--------------------------DGTLASLS 368 (483)
T ss_pred cCCCceEEEeccccch--hhhhhhhhhhcCChhhhhhcccccceeh--------------------------hhhHhhhc
Confidence 3457899999999887 6555444455678999999998886000 00111223
Q ss_pred ccCCCcccccccce-eeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhcccc
Q 040303 407 GGLPNLETLELYNV-NVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQ 485 (552)
Q Consensus 407 ~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 485 (552)
.+.|.|+.|.++.| .+++............+..|+.+.+.+|+.+++-.. ..+..+++|+.+++.+|..+++-.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~Leri~l~~~q~vtk~~---- 443 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSICRNLERIELIDCQDVTKEA---- 443 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHhhCcccceeeeechhhhhhhh----
Confidence 57899999999988 444421111111112678899999999999887533 347788999999999999886642
Q ss_pred ccccccccCCccEEEec
Q 040303 486 QERKNVVFPQLQFLKMV 502 (552)
Q Consensus 486 ~~~~~~~l~~L~~L~l~ 502 (552)
+.....++|+++.....
T Consensus 444 i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 444 ISRFATHLPNIKVHAYF 460 (483)
T ss_pred hHHHHhhCccceehhhc
Confidence 22345567877766544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.7e-07 Score=66.39 Aligned_cols=54 Identities=33% Similarity=0.408 Sum_probs=23.1
Q ss_pred ccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCC
Q 040303 137 VRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGS 190 (552)
Q Consensus 137 Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~ 190 (552)
|++|++++|.+..+|. .+.++++|++|++++|.++. +..+.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4444444444444432 23344444444444444433 233444444444444444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.8e-07 Score=66.34 Aligned_cols=60 Identities=33% Similarity=0.516 Sum_probs=51.1
Q ss_pred CCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCC
Q 040303 109 PQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSEL 170 (552)
Q Consensus 109 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 170 (552)
++|++|++.+|... .+|.+.|.++++|++|++++|.+..+|. .+.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57888888888655 7888888999999999999999988765 679999999999998864
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=5.4e-07 Score=95.64 Aligned_cols=104 Identities=22% Similarity=0.256 Sum_probs=85.2
Q ss_pred CCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCc-ccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEc
Q 040303 159 NLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIE-QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYI 235 (552)
Q Consensus 159 ~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 235 (552)
.++.|+|+++.+.. |..++++.+|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999875 789999999999999999887 89999999999999999999866678876 899999999999
Q ss_pred cccccchhhhhhhcccccChhhhcCC-CCCcEEEccCCC
Q 040303 236 RSFNKWEVEVEAAGVKNASLEELKRL-PNLTTLELCIPD 273 (552)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 273 (552)
+++.. ....+..++.+ .++..+++.+|.
T Consensus 498 s~N~l----------~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSL----------SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcc----------cccCChHHhhccccCceEEecCCc
Confidence 85543 22244555543 466788888776
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=5e-09 Score=105.52 Aligned_cols=127 Identities=24% Similarity=0.273 Sum_probs=99.7
Q ss_pred CccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCC
Q 040303 136 QVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCD 214 (552)
Q Consensus 136 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (552)
.|.+-+.++|.+..+-.++.-+++|+.|||+.|.+.+...+..+++|++|||++|.++.+|.- ...+. |+.|.+++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 466677778888777788888999999999999998877899999999999999988888752 33344 9999999877
Q ss_pred CCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC
Q 040303 215 RLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN 275 (552)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 275 (552)
++.+-. +.+|++|+.||++.+... ....+..++.|..|+.|.+.+|.+-
T Consensus 244 -l~tL~g--ie~LksL~~LDlsyNll~---------~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 -LTTLRG--IENLKSLYGLDLSYNLLS---------EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -HHhhhh--HHhhhhhhccchhHhhhh---------cchhhhHHHHHHHHHHHhhcCCccc
Confidence 666665 789999999999844331 2235667778888899999888653
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.23 E-value=3.2e-07 Score=96.97 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=87.2
Q ss_pred ccCcccEEEeecCCCc-ccCCCc--cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCC
Q 040303 84 ALKFYTSIVLHDSKMN-VLLPEV--LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNL 160 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~-~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L 160 (552)
...++++|++.+...- ..++.. ..+|.||+|.+.+-.+...+ -..++.++++|+.||+++++++.+ .++++|++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 3556888888775432 223322 26888888888875443212 123457788899999998888877 778888888
Q ss_pred cEEEccCCCCCC---hhhhcCCCCccEEEecCCcCcccchh-------hccCCCCCEEeccCCC
Q 040303 161 RTLCLYCSELQD---IAVIGELKNLEILCLRGSYIEQLPVE-------IGQLTRLRSLDLRDCD 214 (552)
Q Consensus 161 ~~L~l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~-------i~~l~~L~~L~l~~~~ 214 (552)
+.|.+++-.+.. ...+-+|++|++||++..+...-+.- -..|++||.||.+++.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 888888777654 56788888888888888743322211 1237788888777654
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=2.8e-06 Score=55.04 Aligned_cols=37 Identities=35% Similarity=0.470 Sum_probs=19.1
Q ss_pred CccEEEeeccccccccchhcCCCCCcEEEccCCCCCC
Q 040303 136 QVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD 172 (552)
Q Consensus 136 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 172 (552)
+|++|++++|.++++|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555555555555555555555443
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.16 E-value=5.3e-08 Score=90.22 Aligned_cols=42 Identities=19% Similarity=0.028 Sum_probs=22.0
Q ss_pred HhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC
Q 040303 328 QLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 328 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
.+++|+.|++.+...+.--.+.-......+|+|+.|++.+|.
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 456777777766543111111111122356777777777776
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.6e-07 Score=83.77 Aligned_cols=179 Identities=22% Similarity=0.271 Sum_probs=110.1
Q ss_pred CccEEEeeccccc--cccchhcCCCCCcEEEccCCCCCCh--hhhcCCCCccEEEecCC-cCcccc--hhhccCCCCCEE
Q 040303 136 QVRVLDLTYMHLS--LLPSSLGLLTNLRTLCLYCSELQDI--AVIGELKNLEILCLRGS-YIEQLP--VEIGQLTRLRSL 208 (552)
Q Consensus 136 ~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~--~~i~~L~~L~~L~l~~~-~l~~lp--~~i~~l~~L~~L 208 (552)
.|++|||++..++ .+...++.+.+|+-|.+.+..+.+| ..|.+=.+|+.|++++| .+++.. --+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888888888775 4555677888888888888888873 67788888888888888 666332 236678888888
Q ss_pred eccCCCCCCccCcccccC-CCCCcEEEccccccchhhhhhhcccccChhh-hcCCCCCcEEEccCCC-CCcCCCcccccC
Q 040303 209 DLRDCDRLQVIPPNVLSN-LSHLEELYIRSFNKWEVEVEAAGVKNASLEE-LKRLPNLTTLELCIPD-VNTLPKGLFFEK 285 (552)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~-~~~~p~~~~l~~ 285 (552)
++++|......-...+.. -++|..|+++++..- .....+.. ...+++|.+|+++.+- +.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--------l~~sh~~tL~~rcp~l~~LDLSD~v~l~---------- 327 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--------LQKSHLSTLVRRCPNLVHLDLSDSVMLK---------- 327 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--------hhhhHHHHHHHhCCceeeeccccccccC----------
Confidence 888886443322111111 245666666533220 00111122 2456666666666332 10
Q ss_pred CceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEe
Q 040303 286 LERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWV 365 (552)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 365 (552)
+.| ......++.|++|.++.|.+..-..+. .+...|.|.+|++
T Consensus 328 ------------------------------~~~----~~~~~kf~~L~~lSlsRCY~i~p~~~~---~l~s~psl~yLdv 370 (419)
T KOG2120|consen 328 ------------------------------NDC----FQEFFKFNYLQHLSLSRCYDIIPETLL---ELNSKPSLVYLDV 370 (419)
T ss_pred ------------------------------chH----HHHHHhcchheeeehhhhcCCChHHee---eeccCcceEEEEe
Confidence 011 123345788999999888772222222 3467899999999
Q ss_pred ecCC
Q 040303 366 EGCQ 369 (552)
Q Consensus 366 ~~c~ 369 (552)
.+|-
T Consensus 371 ~g~v 374 (419)
T KOG2120|consen 371 FGCV 374 (419)
T ss_pred cccc
Confidence 9885
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=1.9e-07 Score=94.52 Aligned_cols=104 Identities=28% Similarity=0.413 Sum_probs=60.2
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEE
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILC 186 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~ 186 (552)
.+.+|..|++.+|.+. .+... +..+.+|++|++++|.|..+ ..+..+..|+.|++++|.+.....+..+.+|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~--~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE--KIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchh--hcccc-hhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccCCccchhhhccc
Confidence 5556666666655443 22221 24566666666666666655 33555666666666666666655555566666666
Q ss_pred ecCCcCcccchh-hccCCCCCEEeccCCC
Q 040303 187 LRGSYIEQLPVE-IGQLTRLRSLDLRDCD 214 (552)
Q Consensus 187 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (552)
++++.+..+... ...+.+++.+.+.++.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 666666655432 3555666666665544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4e-08 Score=88.95 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=33.9
Q ss_pred cCCCcccccccce-eeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCC
Q 040303 408 GLPNLETLELYNV-NVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECP 475 (552)
Q Consensus 408 ~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~ 475 (552)
..|+|..|+++++ .++.-.. .+.. .|+.|++|.++.|..+.--.- --+...|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~---~~~~-kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCF---QEFF-KFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHH---HHHH-hcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 3566667777766 5543111 1111 567777777777765421100 014556677777777764
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.9e-06 Score=91.24 Aligned_cols=135 Identities=24% Similarity=0.298 Sum_probs=76.0
Q ss_pred CCccEEEeecccc--ccccchhc-CCCCCcEEEccCCCCCC---hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEE
Q 040303 135 TQVRVLDLTYMHL--SLLPSSLG-LLTNLRTLCLYCSELQD---IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSL 208 (552)
Q Consensus 135 ~~Lr~L~l~~~~~--~~lp~~i~-~l~~L~~L~l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 208 (552)
.+|++||++|... ..-|..++ .|+.|+.|.+.+-.+.. .....+++||..|||++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4677777777532 23344443 36777777777765433 24455677777777777777777 677777777777
Q ss_pred eccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCC
Q 040303 209 DLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDV 274 (552)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 274 (552)
.+.+-.......-..+.+|++|++||++........ .....-.+--..||+||.||.+++++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~----~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT----KIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccch----HHHHHHHHhcccCccccEEecCCcch
Confidence 766533111111111567777777777622111000 00111122234567778888777653
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=7.7e-07 Score=90.17 Aligned_cols=126 Identities=26% Similarity=0.323 Sum_probs=95.2
Q ss_pred CCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEEe
Q 040303 108 CPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILCL 187 (552)
Q Consensus 108 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l 187 (552)
+..+..+.+..+... .+-.. +..++.|.+|++.++.+..+...+..+.+|++|++++|.|.....+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~--~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA--KILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhh--hhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 344444555444332 21112 367899999999999998886668889999999999999999888888999999999
Q ss_pred cCCcCcccchhhccCCCCCEEeccCCCCCCccCc-ccccCCCCCcEEEccccc
Q 040303 188 RGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPP-NVLSNLSHLEELYIRSFN 239 (552)
Q Consensus 188 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 239 (552)
.+|.+..+ .++..+.+|+.+++++|. +..+.. . +..+.+|+.+.+.++.
T Consensus 148 ~~N~i~~~-~~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 148 SGNLISDI-SGLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ccCcchhc-cCCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 99998887 466778999999999987 555554 1 2677788888776443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=1.2e-05 Score=52.13 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=19.7
Q ss_pred CCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCccc
Q 040303 159 NLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQL 195 (552)
Q Consensus 159 ~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l 195 (552)
+|++|++++|.+++ |+.+++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45566666665555 33355566666666655555544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=6e-07 Score=90.94 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=93.1
Q ss_pred ccCcccEEEeecCCCcccCCCc-cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEV-LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~ 161 (552)
.+.++.+.+++.|.+.. +... .-++.++.|++++|.+. ++. .+..+.+|+.|||++|.+..+|.- ...+ +|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~--~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~ 235 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFT--KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQ 235 (1096)
T ss_pred hhhhHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhh--hhH--HHHhcccccccccccchhccccccchhhh-hhe
Confidence 45667777888887765 3333 36788999999988765 333 347888999999999988777653 2233 499
Q ss_pred EEEccCCCCCChhhhcCCCCccEEEecCCcCcccc--hhhccCCCCCEEeccCCC
Q 040303 162 TLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLP--VEIGQLTRLRSLDLRDCD 214 (552)
Q Consensus 162 ~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 214 (552)
.|++++|.++....|.+|.+|+.||+++|-+...- .-++.|..|+.|.+.+|.
T Consensus 236 ~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 236 LLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99999998888888999999999999998554321 347778888999888874
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=4e-05 Score=74.92 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=35.4
Q ss_pred CCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhh
Q 040303 409 LPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEI 480 (552)
Q Consensus 409 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~ 480 (552)
+++++.|+|++|.+++++ .. .++|++|.|.+|.+++.+|. .+ .++|++|.+.+|.++..+
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~L------P~sLtsL~Lsnc~nLtsLP~--~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VL------PNELTEITIENCNNLTTLPG--SI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CC------CCCCcEEEccCCCCcccCCc--hh--hhhhhheEccCccccccc
Confidence 456666777766665544 12 24577777777777666653 12 246677777766655544
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00014 Score=71.28 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=24.7
Q ss_pred HhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC
Q 040303 328 QLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 328 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
.+.+++.|++.+|. +..++ .-.++|++|.+++|.
T Consensus 50 ~~~~l~~L~Is~c~---L~sLP-----~LP~sLtsL~Lsnc~ 83 (426)
T PRK15386 50 EARASGRLYIKDCD---IESLP-----VLPNELTEITIENCN 83 (426)
T ss_pred HhcCCCEEEeCCCC---CcccC-----CCCCCCcEEEccCCC
Confidence 35788999999883 45544 123579999999887
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=1.2e-05 Score=73.30 Aligned_cols=82 Identities=33% Similarity=0.439 Sum_probs=52.2
Q ss_pred hCCCCccEEEeecccccc---ccchhcCCCCCcEEEccCCCCCC-hhhh-cCCCCccEEEecCCcCc--ccchhhccCCC
Q 040303 132 RKLTQVRVLDLTYMHLSL---LPSSLGLLTNLRTLCLYCSELQD-IAVI-GELKNLEILCLRGSYIE--QLPVEIGQLTR 204 (552)
Q Consensus 132 ~~l~~Lr~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~-~~~i-~~L~~L~~L~l~~~~l~--~lp~~i~~l~~ 204 (552)
....+++.|||.+|.+.+ +-..+.++++|++|+++.|.+.. +.+. ..+.+|++|-+.|+.+. ..-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456678888888886653 44445678888888888777665 3444 35667777777776433 44444555666
Q ss_pred CCEEeccCC
Q 040303 205 LRSLDLRDC 213 (552)
Q Consensus 205 L~~L~l~~~ 213 (552)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 666666554
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=7e-06 Score=65.99 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCCccEEEeeccccccccchhcCC-CCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEecc
Q 040303 134 LTQVRVLDLTYMHLSLLPSSLGLL-TNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLR 211 (552)
Q Consensus 134 l~~Lr~L~l~~~~~~~lp~~i~~l-~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (552)
..+|...++++|.++++|+.+... +-+++|++.+|.+.+ |..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 334444444444444444443322 244444444444444 444444444444444444444444444444444444444
Q ss_pred CC
Q 040303 212 DC 213 (552)
Q Consensus 212 ~~ 213 (552)
++
T Consensus 132 ~n 133 (177)
T KOG4579|consen 132 EN 133 (177)
T ss_pred CC
Confidence 43
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00013 Score=63.05 Aligned_cols=84 Identities=26% Similarity=0.384 Sum_probs=47.1
Q ss_pred hhCCCCccEEEeeccccccccchhcC-CCCCcEEEccCCCCCC---hhhhcCCCCccEEEecCCcCcccch----hhccC
Q 040303 131 FRKLTQVRVLDLTYMHLSLLPSSLGL-LTNLRTLCLYCSELQD---IAVIGELKNLEILCLRGSYIEQLPV----EIGQL 202 (552)
Q Consensus 131 ~~~l~~Lr~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l 202 (552)
|..++.|..|.+.+|+|..+-+.+.. +++|..|.+.+|.+.. ...+..++.|++|.+-++.++.-+. -+.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 34555666666666666555444433 3446666666665544 3444555666666666665553322 25666
Q ss_pred CCCCEEeccCCC
Q 040303 203 TRLRSLDLRDCD 214 (552)
Q Consensus 203 ~~L~~L~l~~~~ 214 (552)
++|+.||+....
T Consensus 140 p~l~~LDF~kVt 151 (233)
T KOG1644|consen 140 PSLRTLDFQKVT 151 (233)
T ss_pred CcceEeehhhhh
Confidence 777777766543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=1.4e-05 Score=64.36 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=87.1
Q ss_pred cccEEEeecCCCcccCCC----ccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcE
Q 040303 87 FYTSIVLHDSKMNVLLPE----VLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRT 162 (552)
Q Consensus 87 ~lr~L~l~~~~~~~~~~~----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 162 (552)
.+.-++++.+.+-. ++. ......|...++++|.+. ++|+.+-.+++.+..|++.+|.+.++|..+..++.||.
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 34556677676554 332 225667788888888765 78888877788899999999999999999999999999
Q ss_pred EEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchh
Q 040303 163 LCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVE 198 (552)
Q Consensus 163 L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~ 198 (552)
|+++.|.+.. |.-|..|.+|-.|+..++....+|-.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999999776 88888899999999988877777755
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00028 Score=60.97 Aligned_cols=99 Identities=27% Similarity=0.256 Sum_probs=50.6
Q ss_pred CccEEEeeccccccccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccc--hhhccCCCCCEEecc
Q 040303 136 QVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLP--VEIGQLTRLRSLDLR 211 (552)
Q Consensus 136 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~ 211 (552)
..-.+|++.|.+..++ .+-.+..|.+|.+.+|+|.. |.--.-+++|++|.+.+|.+..+- ..+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4456666666554432 23455666666666666655 322334455666666666555432 124445566666655
Q ss_pred CCCCCCccC---cccccCCCCCcEEEcc
Q 040303 212 DCDRLQVIP---PNVLSNLSHLEELYIR 236 (552)
Q Consensus 212 ~~~~~~~~~---~~~l~~l~~L~~L~l~ 236 (552)
+|. ...-. .-++.++++|++||+.
T Consensus 122 ~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCc-hhcccCceeEEEEecCcceEeehh
Confidence 543 11111 1124555666666654
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.28 E-value=0.00021 Score=66.91 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCCCceEEEeecCCCCC--cccChhHhhCCCCccEEEeeccccc-----cccchhcCCCCCcEEEccCCCCCC------h
Q 040303 107 ECPQLQLLSLWTEKSSL--ITLPDNFFRKLTQVRVLDLTYMHLS-----LLPSSLGLLTNLRTLCLYCSELQD------I 173 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~--~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~------~ 173 (552)
.-++||+++...|...- .......|+..+.|..+.++.|.|. -+..++..++||++||++.|.++. -
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 44567777766664421 1112233455666777777666553 234456667777777777766543 1
Q ss_pred hhhcCCCCccEEEecCCcCcc-----cchhh-ccCCCCCEEeccCCCCCCc----cCcccccCCCCCcEEEcccc
Q 040303 174 AVIGELKNLEILCLRGSYIEQ-----LPVEI-GQLTRLRSLDLRDCDRLQV----IPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 174 ~~i~~L~~L~~L~l~~~~l~~-----lp~~i-~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~ 238 (552)
..++.+++|+.|++++|.++. +-..+ ...++|+.|.+.+|..-.. +... +...+.|+.|+++.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGN 308 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCcc
Confidence 445566677777777765541 11111 1246677777666642111 1111 344666777776643
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.00026 Score=64.78 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=12.8
Q ss_pred ChhhhcCCCCCcEEEccCCC
Q 040303 254 SLEELKRLPNLTTLELCIPD 273 (552)
Q Consensus 254 ~~~~l~~l~~L~~L~l~~~~ 273 (552)
...++.+++.|+.|++..++
T Consensus 241 svD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred HHHHHcCCchhheeeccCCc
Confidence 45566666777777666554
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.86 E-value=0.00015 Score=75.59 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=16.2
Q ss_pred ccEEEeccccccccccCCcccccCCCccEEEeecCCCcc
Q 040303 496 LQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEFL 534 (552)
Q Consensus 496 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~ 534 (552)
++.|.+..|...+.-........+..++.+.+.+|+.+.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 555555555444332211111113444555555555443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00064 Score=61.38 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCCCcEEEccCCCCCChhhhcCCCCccEEEecCC--cCc-ccchhhccCCCCCEEeccCCCC--CCccCcccccCCCCCc
Q 040303 157 LTNLRTLCLYCSELQDIAVIGELKNLEILCLRGS--YIE-QLPVEIGQLTRLRSLDLRDCDR--LQVIPPNVLSNLSHLE 231 (552)
Q Consensus 157 l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~ 231 (552)
+..|++|++.++.++....+..|++|++|.++.| .+. .++.-+.++++|++|++++|+. ++.+++ +..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 3444555555555444444555556666666555 332 3433444456666666666541 223333 45555666
Q ss_pred EEEccccc
Q 040303 232 ELYIRSFN 239 (552)
Q Consensus 232 ~L~l~~~~ 239 (552)
.|+++++.
T Consensus 120 ~Ldl~n~~ 127 (260)
T KOG2739|consen 120 SLDLFNCS 127 (260)
T ss_pred hhhcccCC
Confidence 66665443
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.84 E-value=0.00039 Score=62.85 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=52.3
Q ss_pred CCCCccEEEeeccccc-----cccchhcCCCCCcEEEccCCC---CCC--h-------hhhcCCCCccEEEecCCcCc-c
Q 040303 133 KLTQVRVLDLTYMHLS-----LLPSSLGLLTNLRTLCLYCSE---LQD--I-------AVIGELKNLEILCLRGSYIE-Q 194 (552)
Q Consensus 133 ~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~---~~~--~-------~~i~~L~~L~~L~l~~~~l~-~ 194 (552)
.+..+..++|++|.|. .+...|.+-.+|+..+++.-. .++ + +.+-++++|++.+++.|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3566677777777653 244555666677777665432 111 2 34556777777777777443 3
Q ss_pred cchh----hccCCCCCEEeccCCCCCCccCc
Q 040303 195 LPVE----IGQLTRLRSLDLRDCDRLQVIPP 221 (552)
Q Consensus 195 lp~~----i~~l~~L~~L~l~~~~~~~~~~~ 221 (552)
.|.. |.+-+.|.||.+++|. ++.+..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG 137 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAG 137 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccch
Confidence 4432 5566778888887765 554443
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.77 E-value=0.00021 Score=74.37 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=25.1
Q ss_pred HhchheeeeecCCCCCcceeeeccccCcccccccEEEeecC
Q 040303 328 QLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGC 368 (552)
Q Consensus 328 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 368 (552)
.++.|+.|.+.++.. +.+..-......+++|+.|++++|
T Consensus 186 ~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSK--ITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhccccc--CChhhHHHHHhhCchhheecccCc
Confidence 357888888888776 333111112346788999998874
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00011 Score=66.55 Aligned_cols=100 Identities=26% Similarity=0.246 Sum_probs=53.9
Q ss_pred CCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccch--hhccCCCCCEEecc
Q 040303 134 LTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPV--EIGQLTRLRSLDLR 211 (552)
Q Consensus 134 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 211 (552)
+.+.+.|+.-||.+.++ ..+.+++.|++|.|+-|.|+....+..+.+|+.|.++.|.|..+-+ -+.++++||.|-+.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34455666666665543 2344566666666666666666566666666666666665554422 24455666666555
Q ss_pred CCCCCCccCc----ccccCCCCCcEEE
Q 040303 212 DCDRLQVIPP----NVLSNLSHLEELY 234 (552)
Q Consensus 212 ~~~~~~~~~~----~~l~~l~~L~~L~ 234 (552)
.|...+.-+. .++.-|++|++||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 5543333322 1134455555554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00021 Score=64.80 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=64.9
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC---hhhhcCCCCcc
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD---IAVIGELKNLE 183 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~~~i~~L~~L~ 183 (552)
.+.+.+.|++.||... + .++..+|+.|.||.|+-|.|+.+ ..+..|++|+.|.|+.|.|.+ ..-+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~--D--Isic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD--D--ISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCcc--H--HHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3556677777777644 2 23456788888888888887776 446778888888888887766 45667788888
Q ss_pred EEEecCCcCc-ccch-----hhccCCCCCEEe
Q 040303 184 ILCLRGSYIE-QLPV-----EIGQLTRLRSLD 209 (552)
Q Consensus 184 ~L~l~~~~l~-~lp~-----~i~~l~~L~~L~ 209 (552)
+|-|..|... .-+. -+.-|++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8877766221 2111 244566777765
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.11 E-value=0.0031 Score=33.82 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=15.8
Q ss_pred CccEEEeeccccccccchhcCC
Q 040303 136 QVRVLDLTYMHLSLLPSSLGLL 157 (552)
Q Consensus 136 ~Lr~L~l~~~~~~~lp~~i~~l 157 (552)
+|++||+++|.++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4778888888887787776543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.05 E-value=0.0032 Score=33.74 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=13.7
Q ss_pred CccEEEecCCcCcccchhhcc
Q 040303 181 NLEILCLRGSYIEQLPVEIGQ 201 (552)
Q Consensus 181 ~L~~L~l~~~~l~~lp~~i~~ 201 (552)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777766677666544
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.04 E-value=0.003 Score=57.15 Aligned_cols=81 Identities=28% Similarity=0.286 Sum_probs=46.4
Q ss_pred CCCCccEEEeecc--ccc-cccchhcCCCCCcEEEccCCCCCC---hhhhcCCCCccEEEecCCcCcccch----hhccC
Q 040303 133 KLTQVRVLDLTYM--HLS-LLPSSLGLLTNLRTLCLYCSELQD---IAVIGELKNLEILCLRGSYIEQLPV----EIGQL 202 (552)
Q Consensus 133 ~l~~Lr~L~l~~~--~~~-~lp~~i~~l~~L~~L~l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l 202 (552)
.+++|+.|.++.| ++. .++.....+++|++|++++|+++. ...+.++++|..|++..|..+.+-. -+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4556666777666 222 344444455777777777777654 3445566677777777775554321 13335
Q ss_pred CCCCEEeccCC
Q 040303 203 TRLRSLDLRDC 213 (552)
Q Consensus 203 ~~L~~L~l~~~ 213 (552)
++|.+|+-..+
T Consensus 143 ~~L~~LD~~dv 153 (260)
T KOG2739|consen 143 PSLKYLDGCDV 153 (260)
T ss_pred hhhcccccccc
Confidence 66666654443
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.0013 Score=57.12 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=28.1
Q ss_pred ccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEecccccc
Q 040303 436 GIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKL 507 (552)
Q Consensus 436 ~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 507 (552)
.++.++.|.+.+|..+.+.--+..-+-.++|+.|+|++|+++++- ....+..|++|+.|.|.+.|.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHHHHHHhhhhHHHHhcCchhh
Confidence 344444455555544444311111122345555555555555432 0012333455555555555433
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.62 E-value=0.025 Score=28.06 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=7.0
Q ss_pred CccEEEecCCcCcccc
Q 040303 181 NLEILCLRGSYIEQLP 196 (552)
Q Consensus 181 ~L~~L~l~~~~l~~lp 196 (552)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555554
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.0088 Score=52.04 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=61.0
Q ss_pred cceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCccccc
Q 040303 439 TLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIE 518 (552)
Q Consensus 439 ~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~ 518 (552)
.++.++-++|. +...-- .-+..++.++.|.+.+|..+..... +.+ .+.+|+|+.|+|++|+.+++-.-..+. .
T Consensus 102 ~IeaVDAsds~-I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L-~~l---~~~~~~L~~L~lsgC~rIT~~GL~~L~-~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGL-EHLRDLRSIKSLSLANCKYFDDWCL-ERL---GGLAPSLQDLDLSGCPRITDGGLACLL-K 174 (221)
T ss_pred eEEEEecCCch-HHHHHH-HHHhccchhhhheeccccchhhHHH-HHh---cccccchheeeccCCCeechhHHHHHH-H
Confidence 35556655542 222110 1245678889999999998876532 221 125899999999999999887544443 7
Q ss_pred CCCccEEEeecCCCcch
Q 040303 519 FPTLETLEVIRCPEFLL 535 (552)
Q Consensus 519 ~~~L~~L~i~~C~~L~~ 535 (552)
+++|+.|.+.+-|....
T Consensus 175 lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 175 LKNLRRLHLYDLPYVAN 191 (221)
T ss_pred hhhhHHHHhcCchhhhc
Confidence 89999999999877643
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.17 E-value=0.033 Score=27.60 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=7.3
Q ss_pred CccEEEeecccccccc
Q 040303 136 QVRVLDLTYMHLSLLP 151 (552)
Q Consensus 136 ~Lr~L~l~~~~~~~lp 151 (552)
+|++|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666665554
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.00 E-value=0.25 Score=40.68 Aligned_cols=115 Identities=14% Similarity=0.303 Sum_probs=40.6
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCcc
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLE 183 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~ 183 (552)
.+.+|+.+.+... ...++...|..+..|+.+.+..+ +..++. .+.++..|+++.+.. .+.. ...+..+.+|+
T Consensus 10 ~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECCC---eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 4445555555421 11455555556656666666553 443333 244454566666543 2222 23444555566
Q ss_pred EEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCC
Q 040303 184 ILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHL 230 (552)
Q Consensus 184 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 230 (552)
.+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 6655443 3333332 3333 555555443 1334444334444333
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.69 E-value=0.27 Score=40.47 Aligned_cols=106 Identities=16% Similarity=0.285 Sum_probs=56.9
Q ss_pred ccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hc
Q 040303 125 TLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IG 200 (552)
Q Consensus 125 ~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~ 200 (552)
.++...|.+..+|+.+.+.. .+..++. .+.++.+|+.+.+..+ +.. -..+.++.+|+.+.+.. .+..++.. +.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35566678888888888875 4555544 4667778888888764 554 35567777788888865 45555443 44
Q ss_pred cCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 201 QLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 201 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
.+++|+.+.+..+ +..++...+.+. +|+.+.+.
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 5778888877552 455655556666 77777664
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.34 E-value=0.096 Score=47.90 Aligned_cols=136 Identities=20% Similarity=0.219 Sum_probs=87.6
Q ss_pred CCCccCCCCceEEEeecCCCCCcccCh---hHhhCCCCccEEEeecccccccc--------------chhcCCCCCcEEE
Q 040303 102 LPEVLECPQLQLLSLWTEKSSLITLPD---NFFRKLTQVRVLDLTYMHLSLLP--------------SSLGLLTNLRTLC 164 (552)
Q Consensus 102 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~---~~~~~l~~Lr~L~l~~~~~~~lp--------------~~i~~l~~L~~L~ 164 (552)
++...+||+|+..+++.|.+.. ..|+ +++++-..|..|.+++|.+..+. +...+-+.|++..
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGS-EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHhcCCcceeeeccccccCc-ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 3445589999999999988765 3333 45677888999999999765322 1234567788888
Q ss_pred ccCCCCCC-h-----hhhcCCCCccEEEecCCcCcc------cchhhccCCCCCEEeccCCCCCCcc---CcccccCCCC
Q 040303 165 LYCSELQD-I-----AVIGELKNLEILCLRGSYIEQ------LPVEIGQLTRLRSLDLRDCDRLQVI---PPNVLSNLSH 229 (552)
Q Consensus 165 l~~~~~~~-~-----~~i~~L~~L~~L~l~~~~l~~------lp~~i~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~ 229 (552)
...|++.. + ..+..-.+|+++.+..|.|.- +-.++..+.+|+.|++.+|.....- -...+...+.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 88888654 3 234445688999998886651 1123456678888888887522111 1111345566
Q ss_pred CcEEEcccc
Q 040303 230 LEELYIRSF 238 (552)
Q Consensus 230 L~~L~l~~~ 238 (552)
|+.|.+..|
T Consensus 244 lrEL~lnDC 252 (388)
T COG5238 244 LRELRLNDC 252 (388)
T ss_pred hhhccccch
Confidence 777776544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.72 E-value=0.22 Score=27.73 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=13.6
Q ss_pred CCCccEEEecCCcCcccchhh
Q 040303 179 LKNLEILCLRGSYIEQLPVEI 199 (552)
Q Consensus 179 L~~L~~L~l~~~~l~~lp~~i 199 (552)
|.+|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776653
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.72 E-value=0.22 Score=27.73 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=13.6
Q ss_pred CCCccEEEecCCcCcccchhh
Q 040303 179 LKNLEILCLRGSYIEQLPVEI 199 (552)
Q Consensus 179 L~~L~~L~l~~~~l~~lp~~i 199 (552)
|.+|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776653
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.45 E-value=0.0092 Score=52.98 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=49.2
Q ss_pred hCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEec
Q 040303 132 RKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDL 210 (552)
Q Consensus 132 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (552)
..++...+||++.+++..+-..++.++.|.-|+++.+.+.. |.+++.+..+..++...|..+..|.+.++++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 44555666666666555555555556666666666555554 56666666666666655555666666666666666665
Q ss_pred cCC
Q 040303 211 RDC 213 (552)
Q Consensus 211 ~~~ 213 (552)
..+
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 554
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.05 E-value=0.5 Score=26.25 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=12.6
Q ss_pred CCccEEEeeccccccccchh
Q 040303 135 TQVRVLDLTYMHLSLLPSSL 154 (552)
Q Consensus 135 ~~Lr~L~l~~~~~~~lp~~i 154 (552)
.+|++|++++|.+..+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666777666666666543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.05 E-value=0.5 Score=26.25 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=12.6
Q ss_pred CCccEEEeeccccccccchh
Q 040303 135 TQVRVLDLTYMHLSLLPSSL 154 (552)
Q Consensus 135 ~~Lr~L~l~~~~~~~lp~~i 154 (552)
.+|++|++++|.+..+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666777666666666543
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.37 E-value=0.55 Score=26.15 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=13.2
Q ss_pred CCCccEEEeecCCCcchh
Q 040303 519 FPTLETLEVIRCPEFLLT 536 (552)
Q Consensus 519 ~~~L~~L~i~~C~~L~~l 536 (552)
+|+|+.|.+++|++++..
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467888888888877643
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.41 E-value=0.055 Score=48.24 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=35.7
Q ss_pred hCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCc
Q 040303 132 RKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSY 191 (552)
Q Consensus 132 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~ 191 (552)
+.+..|..||++.+.+..+|...+.+..++.+++..|..+. |.++++++++++++..++.
T Consensus 62 s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 62 SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 34455555666666666666666666666666665555444 6666666666666666654
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.55 E-value=0.93 Score=24.59 Aligned_cols=9 Identities=44% Similarity=0.331 Sum_probs=2.5
Q ss_pred CcEEEccCC
Q 040303 160 LRTLCLYCS 168 (552)
Q Consensus 160 L~~L~l~~~ 168 (552)
|++|++++|
T Consensus 4 L~~L~l~~n 12 (24)
T PF13516_consen 4 LETLDLSNN 12 (24)
T ss_dssp -SEEE-TSS
T ss_pred CCEEEccCC
Confidence 333333333
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.95 E-value=2.5 Score=23.57 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=12.9
Q ss_pred CCccEEEecCCcCcccch
Q 040303 180 KNLEILCLRGSYIEQLPV 197 (552)
Q Consensus 180 ~~L~~L~l~~~~l~~lp~ 197 (552)
.+|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.97 E-value=5.2 Score=22.32 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=9.3
Q ss_pred CCccEEEecCCcCccc
Q 040303 180 KNLEILCLRGSYIEQL 195 (552)
Q Consensus 180 ~~L~~L~l~~~~l~~l 195 (552)
.+|++|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666655443
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.20 E-value=14 Score=20.85 Aligned_cols=15 Identities=40% Similarity=0.456 Sum_probs=8.6
Q ss_pred CCCcEEEccCCCCCC
Q 040303 158 TNLRTLCLYCSELQD 172 (552)
Q Consensus 158 ~~L~~L~l~~~~~~~ 172 (552)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666543
Done!