Query 040303
Match_columns 552
No_of_seqs 314 out of 3056
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 11:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 3E-29 1E-33 267.3 32.1 425 76-535 23-560 (606)
2 2z63_A TOLL-like receptor 4, v 100.0 2.6E-29 8.7E-34 265.9 26.2 432 76-537 19-535 (570)
3 3t6q_A CD180 antigen; protein- 100.0 6.8E-29 2.3E-33 264.5 29.3 433 83-533 30-560 (606)
4 4eco_A Uncharacterized protein 100.0 6.9E-30 2.3E-34 272.2 19.9 397 86-533 81-600 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 4.4E-29 1.5E-33 270.6 23.9 399 86-534 323-841 (876)
6 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-28 2.2E-32 256.9 29.1 194 89-294 14-214 (606)
7 4ecn_A Leucine-rich repeat pro 100.0 2.3E-28 7.9E-33 264.9 25.4 369 102-534 440-873 (876)
8 3rgz_A Protein brassinosteroid 100.0 3.3E-28 1.1E-32 265.3 25.5 425 83-541 97-559 (768)
9 4eco_A Uncharacterized protein 100.0 2.6E-28 8.9E-33 260.0 22.4 369 102-534 198-633 (636)
10 3rgz_A Protein brassinosteroid 100.0 6.1E-28 2.1E-32 263.1 25.2 150 84-237 198-352 (768)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-27 4.6E-32 251.4 25.0 417 84-545 24-523 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-27 7.7E-32 261.3 26.7 158 75-236 15-182 (844)
13 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-27 3E-31 251.5 30.4 150 84-236 23-179 (680)
14 3t6q_A CD180 antigen; protein- 100.0 1.2E-26 4.1E-31 247.1 29.9 188 89-292 15-210 (606)
15 1o6v_A Internalin A; bacterial 100.0 1.1E-26 3.8E-31 238.8 27.4 342 84-531 44-386 (466)
16 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-26 8.6E-31 248.0 31.4 152 83-237 46-204 (680)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-26 7.8E-31 240.3 27.6 407 85-535 20-483 (520)
18 2z63_A TOLL-like receptor 4, v 99.9 2.5E-26 8.5E-31 242.9 26.4 411 89-539 10-512 (570)
19 3v47_A TOLL-like receptor 5B a 99.9 9.2E-26 3.1E-30 231.6 28.4 365 84-537 28-412 (455)
20 3o6n_A APL1; leucine-rich repe 99.9 4E-26 1.4E-30 229.3 23.3 305 106-505 42-350 (390)
21 1o6v_A Internalin A; bacterial 99.9 8.9E-26 3.1E-30 232.1 26.3 323 107-533 44-366 (466)
22 4fmz_A Internalin; leucine ric 99.9 1.6E-25 5.3E-30 221.3 23.9 101 132-236 63-163 (347)
23 2z81_A CD282 antigen, TOLL-lik 99.9 8.8E-26 3E-30 237.5 22.3 388 83-506 47-509 (549)
24 4fmz_A Internalin; leucine ric 99.9 1.5E-25 5.1E-30 221.4 22.5 304 83-505 41-344 (347)
25 3o6n_A APL1; leucine-rich repe 99.9 3.4E-25 1.2E-29 222.5 23.1 302 84-475 43-350 (390)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.6E-25 2.9E-29 230.3 26.9 403 86-533 52-510 (562)
27 3oja_B Anopheles plasmodium-re 99.9 2.2E-25 7.6E-30 236.1 22.3 304 107-505 49-356 (597)
28 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-24 4.1E-29 239.7 27.6 171 89-274 7-186 (844)
29 2z7x_B TOLL-like receptor 1, v 99.9 3.9E-25 1.3E-29 230.9 22.0 376 83-505 42-479 (520)
30 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-24 4.6E-29 232.7 25.2 147 75-225 42-194 (635)
31 3oja_B Anopheles plasmodium-re 99.9 2.4E-24 8.3E-29 228.1 22.5 302 84-475 49-356 (597)
32 3bz5_A Internalin-J, INLJ; leu 99.9 7.1E-24 2.4E-28 216.2 20.6 304 84-504 40-349 (457)
33 2id5_A Lingo-1, leucine rich r 99.9 2.4E-23 8.1E-28 214.9 23.3 149 85-236 31-184 (477)
34 2id5_A Lingo-1, leucine rich r 99.9 3.9E-23 1.3E-27 213.2 24.4 312 89-475 14-331 (477)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-23 8.1E-28 219.3 22.3 376 83-505 73-508 (562)
36 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-22 5.1E-27 216.8 25.4 144 90-239 35-184 (635)
37 3v47_A TOLL-like receptor 5B a 99.9 1.6E-22 5.6E-27 207.4 24.2 366 89-540 13-390 (455)
38 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.1E-28 213.7 15.1 136 86-236 11-161 (454)
39 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-22 3.9E-27 207.3 20.0 298 106-530 39-349 (457)
40 1xku_A Decorin; proteoglycan, 99.9 1.2E-21 4.2E-26 191.8 22.6 156 110-281 32-190 (330)
41 2ft3_A Biglycan; proteoglycan, 99.9 5.6E-22 1.9E-26 194.3 19.3 164 110-291 34-200 (332)
42 1jl5_A Outer protein YOPM; leu 99.9 4.5E-22 1.5E-26 202.8 19.0 362 103-531 5-407 (454)
43 4fcg_A Uncharacterized protein 99.9 7.7E-22 2.6E-26 192.5 17.7 90 133-222 79-169 (328)
44 4fcg_A Uncharacterized protein 99.9 5.7E-21 2E-25 186.3 19.6 180 85-280 80-272 (328)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-20 4.8E-25 184.4 21.1 291 135-531 33-331 (332)
46 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-21 8.8E-26 187.7 14.7 243 86-369 50-302 (313)
47 1xku_A Decorin; proteoglycan, 99.9 3.7E-20 1.3E-24 181.2 22.9 295 134-530 30-329 (330)
48 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.6E-25 183.3 15.1 154 109-275 50-210 (313)
49 2z80_A TOLL-like receptor 2, v 99.8 2.1E-20 7.1E-25 184.8 17.2 172 90-275 35-211 (353)
50 3ogk_B Coronatine-insensitive 99.8 3E-21 1E-25 204.8 9.9 178 107-295 110-304 (592)
51 3g06_A SSPH2 (leucine-rich rep 99.8 3.5E-19 1.2E-23 187.0 25.0 255 86-475 40-295 (622)
52 2z80_A TOLL-like receptor 2, v 99.8 2.2E-20 7.6E-25 184.6 13.1 172 107-293 29-207 (353)
53 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-19 4.8E-24 173.2 18.0 201 83-296 29-237 (285)
54 2p1m_B Transport inhibitor res 99.8 1.3E-21 4.6E-26 207.7 2.0 202 85-293 65-298 (594)
55 2z66_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 173.5 16.7 224 85-369 27-259 (306)
56 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-21 5.7E-26 200.2 1.4 394 85-534 2-441 (461)
57 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-18 3.9E-23 183.1 22.5 255 109-505 40-295 (622)
58 3zyj_A Leucine-rich repeat-con 99.8 1.5E-18 5.1E-23 176.8 20.5 240 88-369 45-290 (440)
59 3zyi_A Leucine-rich repeat-con 99.8 9.4E-19 3.2E-23 178.9 18.8 240 88-369 56-301 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.8 4.3E-20 1.5E-24 179.5 7.6 133 125-275 24-157 (317)
61 1z7x_W Ribonuclease inhibitor; 99.8 4E-21 1.4E-25 197.4 -0.6 366 109-531 3-409 (461)
62 3zyi_A Leucine-rich repeat-con 99.8 1.9E-18 6.5E-23 176.7 19.1 198 83-295 72-277 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 2.1E-18 7.3E-23 175.6 18.9 204 76-295 55-266 (440)
64 1ozn_A Reticulon 4 receptor; N 99.8 6.1E-18 2.1E-22 161.8 19.7 191 89-294 14-211 (285)
65 1p9a_G Platelet glycoprotein I 99.8 5.2E-18 1.8E-22 162.2 18.8 197 84-296 8-207 (290)
66 2o6q_A Variable lymphocyte rec 99.8 8.6E-18 2.9E-22 159.3 20.0 196 86-296 16-217 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.8 5E-20 1.7E-24 179.0 3.6 216 107-369 32-248 (317)
68 1h6u_A Internalin H; cell adhe 99.8 9.8E-18 3.4E-22 161.9 19.1 192 83-296 38-229 (308)
69 2p1m_B Transport inhibitor res 99.8 9E-20 3.1E-24 193.6 3.6 198 84-293 103-323 (594)
70 2z66_A Variable lymphocyte rec 99.8 5.6E-17 1.9E-21 156.8 20.9 199 83-295 49-259 (306)
71 1wwl_A Monocyte differentiatio 99.8 7.7E-19 2.6E-23 170.2 7.5 153 108-275 42-214 (312)
72 2z62_A TOLL-like receptor 4, v 99.7 1.4E-17 4.9E-22 158.4 15.6 199 84-296 26-236 (276)
73 2o6q_A Variable lymphocyte rec 99.7 5.8E-17 2E-21 153.5 19.5 179 84-275 35-218 (270)
74 3ogk_B Coronatine-insensitive 99.7 2.1E-18 7.2E-23 182.9 10.6 387 86-530 138-548 (592)
75 1wwl_A Monocyte differentiatio 99.7 2.1E-18 7.3E-23 167.1 8.3 242 86-369 43-307 (312)
76 2xwt_C Thyrotropin receptor; s 99.7 5E-17 1.7E-21 151.1 16.3 198 77-291 24-233 (239)
77 3oja_A Leucine-rich immune mol 99.7 9.9E-18 3.4E-22 172.4 11.0 235 136-473 35-271 (487)
78 3rfs_A Internalin B, repeat mo 99.7 1.5E-17 5.1E-22 157.8 11.3 174 84-273 39-216 (272)
79 3rfs_A Internalin B, repeat mo 99.7 2.7E-16 9.2E-21 149.1 18.3 191 90-297 23-218 (272)
80 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.6E-21 152.4 15.4 191 91-294 12-210 (276)
81 3oja_A Leucine-rich immune mol 99.7 3.9E-17 1.3E-21 167.9 12.6 211 87-369 35-248 (487)
82 3m19_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 145.7 18.2 175 86-275 14-192 (251)
83 1h6t_A Internalin B; cell adhe 99.7 1.8E-16 6.3E-21 151.6 15.5 173 84-278 44-216 (291)
84 1p9a_G Platelet glycoprotein I 99.7 2.3E-16 7.8E-21 150.8 16.0 170 106-291 7-179 (290)
85 1h6u_A Internalin H; cell adhe 99.7 3.7E-16 1.3E-20 150.8 16.9 181 78-280 55-235 (308)
86 2xwt_C Thyrotropin receptor; s 99.7 4.8E-16 1.6E-20 144.4 14.9 166 98-280 23-198 (239)
87 1h6t_A Internalin B; cell adhe 99.7 1.8E-16 6.1E-21 151.7 11.3 185 89-295 27-211 (291)
88 4ay9_X Follicle-stimulating ho 99.7 3.5E-15 1.2E-19 146.9 18.7 77 410-502 177-254 (350)
89 3m19_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 140.2 16.2 153 84-239 33-190 (251)
90 1m9s_A Internalin B; cell inva 99.6 1.4E-15 4.8E-20 159.4 14.4 175 83-279 40-214 (605)
91 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.5E-19 133.3 15.0 146 84-238 42-191 (197)
92 2ast_B S-phase kinase-associat 99.6 2.6E-16 8.8E-21 154.3 7.5 149 110-272 48-205 (336)
93 2ast_B S-phase kinase-associat 99.6 3.7E-16 1.3E-20 153.2 7.8 125 109-237 70-204 (336)
94 4glp_A Monocyte differentiatio 99.6 3E-15 1E-19 144.8 13.8 195 86-295 91-305 (310)
95 2o6s_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 135.6 12.9 171 89-281 10-185 (208)
96 1m9s_A Internalin B; cell inva 99.6 8.4E-16 2.9E-20 161.2 8.4 189 85-295 20-208 (605)
97 3e6j_A Variable lymphocyte rec 99.6 1.6E-14 5.3E-19 133.0 15.7 146 88-238 21-169 (229)
98 4ay9_X Follicle-stimulating ho 99.6 2.7E-14 9.1E-19 140.5 18.4 184 84-280 28-220 (350)
99 4ezg_A Putative uncharacterize 99.6 6.8E-15 2.3E-19 132.1 12.3 150 107-275 42-194 (197)
100 1xeu_A Internalin C; cellular 99.6 1.3E-15 4.5E-20 143.3 7.7 170 85-277 18-187 (263)
101 2v9t_B SLIT homolog 2 protein 99.6 2.8E-14 9.5E-19 130.4 14.8 145 89-238 14-162 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.6 4E-14 1.4E-18 129.3 14.8 145 89-238 14-163 (220)
103 4glp_A Monocyte differentiatio 99.6 2.9E-14 9.8E-19 137.9 14.5 175 83-275 114-307 (310)
104 2ca6_A RAN GTPase-activating p 99.6 1.6E-15 5.5E-20 151.6 5.7 185 85-276 31-258 (386)
105 1xeu_A Internalin C; cellular 99.6 4.4E-14 1.5E-18 132.8 14.5 146 83-239 38-183 (263)
106 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.6E-18 142.8 17.6 174 86-295 59-241 (571)
107 2o6s_A Variable lymphocyte rec 99.5 6E-14 2.1E-18 127.1 12.7 143 84-236 26-173 (208)
108 2v9t_B SLIT homolog 2 protein 99.5 1E-13 3.4E-18 126.6 14.0 147 112-274 14-164 (220)
109 3goz_A Leucine-rich repeat-con 99.5 5.9E-15 2E-19 146.0 6.0 174 92-275 4-209 (362)
110 2ca6_A RAN GTPase-activating p 99.5 1E-15 3.4E-20 153.1 0.3 67 407-475 241-314 (386)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 1.9E-13 6.5E-18 124.8 14.9 147 112-274 14-165 (220)
112 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 125.6 14.7 136 76-214 31-170 (229)
113 2xot_A Amphoterin-induced prot 99.5 1E-13 3.5E-18 137.0 13.6 143 89-236 21-171 (361)
114 2ell_A Acidic leucine-rich nuc 99.5 1E-13 3.4E-18 121.0 12.0 139 134-280 23-165 (168)
115 2xot_A Amphoterin-induced prot 99.5 6.4E-14 2.2E-18 138.4 12.0 159 76-238 30-199 (361)
116 2ell_A Acidic leucine-rich nuc 99.5 1.1E-13 3.8E-18 120.7 12.1 133 84-221 22-164 (168)
117 2je0_A Acidic leucine-rich nuc 99.5 2.8E-13 9.7E-18 115.5 10.5 123 85-211 16-148 (149)
118 2je0_A Acidic leucine-rich nuc 99.4 1.2E-13 4.1E-18 117.8 8.0 124 109-235 17-147 (149)
119 3goz_A Leucine-rich repeat-con 99.4 6.7E-14 2.3E-18 138.4 6.6 186 84-278 20-241 (362)
120 3cvr_A Invasion plasmid antige 99.4 2.2E-12 7.6E-17 133.7 16.3 159 84-276 78-244 (571)
121 4b8c_D Glucose-repressible alc 99.4 6E-13 2.1E-17 143.1 11.1 152 85-239 172-327 (727)
122 1a9n_A U2A', U2A'; complex (nu 99.4 7.8E-13 2.7E-17 116.2 9.4 125 107-236 17-148 (176)
123 1a9n_A U2A', U2A'; complex (nu 99.4 8.1E-13 2.8E-17 116.1 9.4 126 84-214 17-151 (176)
124 2wfh_A SLIT homolog 2 protein 99.4 2.4E-12 8.4E-17 114.7 12.6 101 135-236 31-134 (193)
125 1w8a_A SLIT protein; signaling 99.4 2.7E-12 9.1E-17 114.5 10.9 121 89-213 11-136 (192)
126 1w8a_A SLIT protein; signaling 99.3 6E-12 2E-16 112.2 11.9 119 112-236 11-134 (192)
127 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5.1E-16 109.6 13.1 121 89-214 13-137 (193)
128 2o6r_A Variable lymphocyte rec 99.3 1.6E-11 5.4E-16 107.9 12.8 122 89-214 10-135 (177)
129 1dce_A Protein (RAB geranylger 99.3 7.7E-12 2.6E-16 130.3 12.2 123 136-269 442-567 (567)
130 4b8c_D Glucose-repressible alc 99.3 4E-12 1.4E-16 136.7 7.7 112 107-221 222-334 (727)
131 2o6r_A Variable lymphocyte rec 99.3 4.4E-11 1.5E-15 105.0 12.9 121 112-238 10-134 (177)
132 1dce_A Protein (RAB geranylger 99.3 2E-11 6.9E-16 127.2 12.5 190 87-290 350-566 (567)
133 1ds9_A Outer arm dynein; leuci 99.3 2.1E-13 7.1E-18 122.5 -2.3 102 132-236 45-148 (198)
134 1ds9_A Outer arm dynein; leuci 99.2 1E-13 3.6E-18 124.4 -5.1 125 106-234 45-180 (198)
135 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 5.7E-15 100.8 10.7 80 135-214 33-116 (174)
136 3g39_A Variable lymphocyte rec 99.1 1.9E-10 6.6E-15 100.1 10.6 96 138-236 12-110 (170)
137 2r9u_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 99.0 10.5 110 88-201 14-126 (174)
138 3g39_A Variable lymphocyte rec 99.1 1E-09 3.5E-14 95.4 11.4 80 135-214 30-113 (170)
139 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4E-14 106.3 10.8 167 108-290 100-327 (329)
140 3sb4_A Hypothetical leucine ri 98.9 7.4E-09 2.5E-13 100.6 13.4 103 409-527 225-328 (329)
141 3un9_A NLR family member X1; l 98.7 3.1E-09 1.1E-13 104.7 3.0 129 85-214 71-222 (372)
142 2ifg_A High affinity nerve gro 98.7 3E-08 1E-12 97.1 10.1 97 114-214 13-114 (347)
143 2ifg_A High affinity nerve gro 98.7 2.8E-08 9.7E-13 97.3 9.5 99 91-193 13-116 (347)
144 4fdw_A Leucine rich hypothetic 98.7 6.3E-07 2.2E-11 89.0 19.1 163 108-292 112-279 (401)
145 4fdw_A Leucine rich hypothetic 98.7 6.9E-07 2.4E-11 88.7 17.7 143 110-273 136-282 (401)
146 3un9_A NLR family member X1; l 98.6 4.2E-09 1.4E-13 103.7 0.4 161 108-276 71-253 (372)
147 3e4g_A ATP synthase subunit S, 98.5 1.1E-07 3.7E-12 81.5 5.1 18 436-453 83-100 (176)
148 3e4g_A ATP synthase subunit S, 98.5 6.8E-08 2.3E-12 82.7 3.2 91 438-536 61-155 (176)
149 2ra8_A Uncharacterized protein 98.4 7.2E-07 2.5E-11 87.0 8.1 183 84-274 105-319 (362)
150 4fs7_A Uncharacterized protein 98.2 6.4E-05 2.2E-09 74.6 18.5 34 436-472 295-328 (394)
151 4fs7_A Uncharacterized protein 98.2 6E-05 2.1E-09 74.8 18.1 58 408-473 318-375 (394)
152 2a5y_B CED-4; apoptosis; HET: 98.1 2.1E-07 7.1E-12 96.8 -2.2 64 1-65 408-473 (549)
153 2ra8_A Uncharacterized protein 98.0 7.2E-06 2.5E-10 79.9 7.7 149 84-239 137-318 (362)
154 1io0_A Tropomodulin; LRR prote 98.0 9.1E-06 3.1E-10 71.3 6.0 80 131-210 32-128 (185)
155 1io0_A Tropomodulin; LRR prote 97.9 1.1E-05 3.6E-10 70.8 5.9 107 107-214 34-162 (185)
156 3rw6_A Nuclear RNA export fact 97.9 1.6E-05 5.3E-10 73.5 6.1 78 156-234 168-257 (267)
157 3rw6_A Nuclear RNA export fact 97.7 7.8E-06 2.7E-10 75.5 2.1 61 133-193 168-233 (267)
158 4gt6_A Cell surface protein; l 97.7 0.0043 1.5E-07 61.3 21.0 119 110-236 65-190 (394)
159 4h09_A Hypothetical leucine ri 97.0 0.024 8.2E-07 55.5 16.9 120 107-236 44-166 (379)
160 4gt6_A Cell surface protein; l 96.1 0.021 7.1E-07 56.3 9.6 106 153-272 260-367 (394)
161 4h09_A Hypothetical leucine ri 95.2 0.14 4.7E-06 50.0 11.5 128 128-270 210-341 (379)
162 3rfe_A Platelet glycoprotein I 94.1 0.085 2.9E-06 42.5 5.9 31 160-190 33-65 (130)
163 3rfe_A Platelet glycoprotein I 93.1 0.13 4.6E-06 41.3 5.4 32 204-236 32-63 (130)
164 1pgv_A TMD-1, tropomodulin TMD 92.9 0.16 5.5E-06 44.0 5.9 81 132-212 38-135 (197)
165 1pgv_A TMD-1, tropomodulin TMD 92.5 0.1 3.6E-06 45.2 4.2 82 132-213 67-167 (197)
166 3sfz_A APAF-1, apoptotic pepti 92.0 0.096 3.3E-06 60.0 4.4 45 19-63 408-452 (1249)
167 1vt4_I APAF-1 related killer D 90.7 0.13 4.6E-06 56.0 3.4 34 22-57 404-437 (1221)
168 1z6t_A APAF-1, apoptotic prote 81.9 1.1 3.8E-05 46.5 4.6 40 21-60 410-449 (591)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3e-29 Score=267.26 Aligned_cols=425 Identities=18% Similarity=0.116 Sum_probs=264.4
Q ss_pred cccccCccccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cch
Q 040303 76 SREWLDEGALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSS 153 (552)
Q Consensus 76 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~ 153 (552)
....|. ..++++++|+++++.+....+..+ .+++|++|++++|... .+++..|.++++|++|++++|.+..+ |..
T Consensus 23 l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 23 LSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp CSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred cccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc--ccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 344443 356889999999999988444344 8999999999998765 67666679999999999999999877 788
Q ss_pred hcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCc--ccchhhccCCCCCEEeccCCCCCCccCcccccCCC-
Q 040303 154 LGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIE--QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLS- 228 (552)
Q Consensus 154 i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~- 228 (552)
++++++|++|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|. +..+++..++.++
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRE 178 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHH
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhc
Confidence 9999999999999999876 477999999999999999887 578999999999999999986 4444332233332
Q ss_pred --------------------------CCcEEEccccccchhhhh------------------------------------
Q 040303 229 --------------------------HLEELYIRSFNKWEVEVE------------------------------------ 246 (552)
Q Consensus 229 --------------------------~L~~L~l~~~~~~~~~~~------------------------------------ 246 (552)
+|+.|+++++........
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 455555543211000000
Q ss_pred -----------hhcccccChh----------------------hhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEe
Q 040303 247 -----------AAGVKNASLE----------------------ELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICI 293 (552)
Q Consensus 247 -----------~~~~~~~~~~----------------------~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~ 293 (552)
.......... .+..+++|++|++++|.+..+|.. .+++|+.|.+..
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTM 337 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEES
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccC
Confidence 0000000111 233344455555555555445533 455555555554
Q ss_pred cccccCCCCCCcccceeeecCcccccccc--hhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC--
Q 040303 294 GRWCWEDTSPTCSRTFRLLLGTDNCISFK--SGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ-- 369 (552)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-- 369 (552)
+............+...+.+..+.-.... ......+++|+.|++.++.- ..++ .....+++|+.|++++|.
T Consensus 338 n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l---~~~~--~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 338 NKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA---IIMS--ANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp CSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE---EEEC--CCCTTCTTCCEEECTTSEEE
T ss_pred CcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc---ccch--hhccCCCCCCeeECCCCccC
Confidence 42111111112223333333332211111 23344556666776666543 3333 223456777777777765
Q ss_pred CCCC-cchhhhhhc----ccccccceeeeccCCCCCccccccccCCCcccccccceeeeE-eccCCCCccccccCcceEE
Q 040303 370 APSP-KESKRCKES----TSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVER-IWKSQLPAMSCGIQTLTRL 443 (552)
Q Consensus 370 ~~lp-~~~~~~~~L----i~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~l~~L~~L 443 (552)
+..| ..+..+++| ++.|.+... .+...+.+++|+.|++++|.+.. ....... .+++|++|
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L 478 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKID----------FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA----NTTNLTFL 478 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEEC----------CTTTTTTCTTCCEEECTTCEEGGGEECSCCT----TCTTCCEE
T ss_pred CccChhhhhccccCCEEECcCCCCCcc----------chhhhcCCCCCCEEECCCCcCCCcchHHhhc----cCCCCCEE
Confidence 2222 233334333 333332221 22334678899999999997654 2222222 78999999
Q ss_pred EEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCC-Cc
Q 040303 444 IVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFP-TL 522 (552)
Q Consensus 444 ~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~-~L 522 (552)
++++| .++.+++ ..+..+++|++|++.+|. ++.+. +. ....+++|+.|+++++ .++.+|.. +. .++ +|
T Consensus 479 ~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~-~~----~~~~l~~L~~L~l~~N-~l~~~p~~-~~-~l~~~L 547 (606)
T 3vq2_A 479 DLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLD-SS----HYNQLYSLSTLDCSFN-RIETSKGI-LQ-HFPKSL 547 (606)
T ss_dssp ECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEE-GG----GTTTCTTCCEEECTTS-CCCCEESC-GG-GSCTTC
T ss_pred ECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcC-HH----HccCCCcCCEEECCCC-cCcccCHh-Hh-hhcccC
Confidence 99987 5666654 257889999999999985 44431 12 2344889999999998 47788776 33 566 59
Q ss_pred cEEEeecCCCcch
Q 040303 523 ETLEVIRCPEFLL 535 (552)
Q Consensus 523 ~~L~i~~C~~L~~ 535 (552)
+.|++.++|-.-.
T Consensus 548 ~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 548 AFFNLTNNSVACI 560 (606)
T ss_dssp CEEECCSCCCCCS
T ss_pred cEEEccCCCcccC
Confidence 9999988765433
No 2
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=265.86 Aligned_cols=432 Identities=19% Similarity=0.130 Sum_probs=278.0
Q ss_pred cccccCccccCcccEEEeecCCCcccCCC-ccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-ch
Q 040303 76 SREWLDEGALKFYTSIVLHDSKMNVLLPE-VLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SS 153 (552)
Q Consensus 76 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~ 153 (552)
...+|. ..++++++|++++|.+....+. +..+++|++|++++|... .++...|.++++|++|++++|.+..+| ..
T Consensus 19 l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 19 FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC--ccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 444443 3567899999999998874443 348999999999998755 677777799999999999999988775 67
Q ss_pred hcCCCCCcEEEccCCCCCC-h-hhhcCCCCccEEEecCCcCcc--cchhhccCCCCCEEeccCCCCCCccCcccccCCCC
Q 040303 154 LGLLTNLRTLCLYCSELQD-I-AVIGELKNLEILCLRGSYIEQ--LPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSH 229 (552)
Q Consensus 154 i~~l~~L~~L~l~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 229 (552)
++++++|++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...++.+++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHT
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhc
Confidence 8999999999999999887 3 368999999999999998875 78899999999999999886 55555443555555
Q ss_pred C----cEEEccccccchhhhh-h---------------------------------------------------------
Q 040303 230 L----EELYIRSFNKWEVEVE-A--------------------------------------------------------- 247 (552)
Q Consensus 230 L----~~L~l~~~~~~~~~~~-~--------------------------------------------------------- 247 (552)
| +.|+++++........ .
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred cchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 5 5555542211000000 0
Q ss_pred -------------hcccccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccCCceEEEEecccccCCCCCCcccceeeec
Q 040303 248 -------------AGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGRWCWEDTSPTCSRTFRLLL 313 (552)
Q Consensus 248 -------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l 313 (552)
..........+..+++|+.|+++++.+..+|..+ .+ +|+.|.+..+..... ..........+.+
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l-~~~~l~~L~~L~l 332 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQF-PTLKLKSLKRLTF 332 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSC-CBCBCSSCCEEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccccc-CcccccccCEEeC
Confidence 0111223345667788889999888887888776 44 888888877664321 1111122222222
Q ss_pred CcccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC-CCCCcchhhhhhcccccccceee
Q 040303 314 GTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ-APSPKESKRCKESTSEMRSNEII 392 (552)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~~~~~~Li~~c~l~~l~ 392 (552)
..+........ ..+++|+.|++.++.-......+. ....+++|++|++++|. ..+|..+..+++| +.+.
T Consensus 333 ~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L------~~L~ 402 (570)
T 2z63_A 333 TSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQ--SDFGTTSLKYLDLSFNGVITMSSNFLGLEQL------EHLD 402 (570)
T ss_dssp ESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEH--HHHTCSCCCEEECCSCSEEEEEEEEETCTTC------CEEE
T ss_pred cCCcccccccc--ccCCCCCEEeCcCCccCccccccc--cccccCccCEEECCCCccccccccccccCCC------CEEE
Confidence 22111111000 345677777777655321211111 22456777777777776 2223223333332 2222
Q ss_pred eccCCCCCc-cccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCc-cccccchhHhhhcccceEE
Q 040303 393 LEDHVNVPN-TFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGEL-RCLFSSSIVNSFIRLQHLE 470 (552)
Q Consensus 393 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L-~~lp~~~~~~~l~~L~~L~ 470 (552)
......... .......+++|+.|++++|.+......... .+++|++|++.+|.-. ..+|. .+..+++|++|+
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~ 476 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLD 476 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEE
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh----cCCcCcEEECcCCcCccccchh--hhhcccCCCEEE
Confidence 211100000 012345788999999999977665433333 7899999999997533 24554 478899999999
Q ss_pred EecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecCCCcchhh
Q 040303 471 IDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEFLLTA 537 (552)
Q Consensus 471 i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 537 (552)
+.+|. ++.+. +. ....+++|++|++.+| .++.++...+. .+++|+.|++++++---..|
T Consensus 477 l~~n~-l~~~~-~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 477 LSQCQ-LEQLS-PT----AFNSLSSLQVLNMASN-QLKSVPDGIFD-RLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTSC-CCEEC-TT----TTTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEECCSSCBCCCTT
T ss_pred CCCCc-cccCC-hh----hhhcccCCCEEeCCCC-cCCCCCHHHhh-cccCCcEEEecCCcccCCCc
Confidence 99985 43331 11 2345899999999998 67777665443 78999999999976443333
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.8e-29 Score=264.48 Aligned_cols=433 Identities=15% Similarity=0.147 Sum_probs=262.7
Q ss_pred cccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCCC
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNL 160 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L 160 (552)
..++++++|++++|.+....+..+ .+++|++|++++|... .+++..|.++++|++|++++|.+..+ |..++++++|
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 356789999999999988545444 8999999999998765 56555568999999999999988765 6789999999
Q ss_pred cEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccc-hhhccCCCCCEEeccCCCCCCccCcccccCCCCCc--EEEc
Q 040303 161 RTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLP-VEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLE--ELYI 235 (552)
Q Consensus 161 ~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l 235 (552)
++|++++|.+.. +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.+++|+ +|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEec
Confidence 999999999887 578899999999999999888652 334458999999999887 6666555578888888 6666
Q ss_pred cccccchhhhh-----------------------------------------------------------------hhcc
Q 040303 236 RSFNKWEVEVE-----------------------------------------------------------------AAGV 250 (552)
Q Consensus 236 ~~~~~~~~~~~-----------------------------------------------------------------~~~~ 250 (552)
.++........ ....
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 53321110000 0000
Q ss_pred cccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccCCceEEEEecccccC--CCCCCcccceeeecCccccc-ccchhHH
Q 040303 251 KNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGRWCWE--DTSPTCSRTFRLLLGTDNCI-SFKSGHI 326 (552)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~l~~~~~~-~~~~~~~ 326 (552)
.......++.+++|+.|++++|.+..+|..+ .+++|+.|.+..+..... ...........+.+..+... ..+....
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 1112233677888999999998888888876 778888888876653221 01122233334444333222 2233344
Q ss_pred HHhchheeeeecCCCCCcceeee-ccccCcccccccEEEeecCC--CCCCcchhhhhhc----ccccc------------
Q 040303 327 VQLQRIEDLCLSGLPDQDIIELV-NNKLGSYSSQLKHLWVEGCQ--APSPKESKRCKES----TSEMR------------ 387 (552)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~--~~lp~~~~~~~~L----i~~c~------------ 387 (552)
..+++|+.|++.++.- .... .......+++|++|++++|. +..|..+..+++| +..+.
T Consensus 347 ~~l~~L~~L~l~~n~l---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 347 ENLENLRELDLSHDDI---ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTCTTCCEEECCSSCC---CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hccCcCCEEECCCCcc---ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 4567777777776654 2221 01234567777777777776 2233334334333 22222
Q ss_pred ---cceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhc
Q 040303 388 ---SNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFI 464 (552)
Q Consensus 388 ---l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~ 464 (552)
++.+...............+.+++|+.|++++|.+...... .....+.+++|++|++++| ++..+++ ..+..++
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~ 500 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLK 500 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCC-ccCccCh-hhhcccc
Confidence 22222211111111122234566666666666654321000 0011125667777777665 4455443 2356667
Q ss_pred ccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecCCCc
Q 040303 465 RLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEF 533 (552)
Q Consensus 465 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L 533 (552)
+|++|++.+|. ++... ++ ....+++| .|++.++ .++.++...+. .+++|+.|+++++|--
T Consensus 501 ~L~~L~Ls~N~-l~~~~-~~----~l~~l~~L-~L~L~~N-~l~~~~~~~~~-~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 501 MMNHVDLSHNR-LTSSS-IE----ALSHLKGI-YLNLASN-HISIILPSLLP-ILSQQRTINLRQNPLD 560 (606)
T ss_dssp TCCEEECCSSC-CCGGG-GG----GGTTCCSC-EEECCSS-CCCCCCGGGHH-HHHTSSEEECTTCCEE
T ss_pred CCCEEECCCCc-cCcCC-hh----HhCccccc-EEECcCC-cccccCHhhcc-cCCCCCEEeCCCCCcc
Confidence 77777777664 33321 11 23336666 7777776 44455444332 5677888888877643
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6.9e-30 Score=272.23 Aligned_cols=397 Identities=12% Similarity=0.101 Sum_probs=249.9
Q ss_pred CcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCC-------------------------------------------
Q 040303 86 KFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKS------------------------------------------- 121 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~------------------------------------------- 121 (552)
.+|+.|+++++.+.+.+|..+ .+++|++|++++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 478899999999887777555 899999999988742
Q ss_pred ---------------------------------CCcccChhHhhCCCCccEEEeecccccc------------------c
Q 040303 122 ---------------------------------SLITLPDNFFRKLTQVRVLDLTYMHLSL------------------L 150 (552)
Q Consensus 122 ---------------------------------~~~~~~~~~~~~l~~Lr~L~l~~~~~~~------------------l 150 (552)
....+|..+ +++++|++|++++|.+.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHH-hcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 111366664 889999999999999987 9
Q ss_pred cchhc--CCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCc-Cc--ccchhhccC------CCCCEEeccCCCCCC
Q 040303 151 PSSLG--LLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSY-IE--QLPVEIGQL------TRLRSLDLRDCDRLQ 217 (552)
Q Consensus 151 p~~i~--~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~ 217 (552)
|..++ ++++|++|++++|.+.. |..++++++|++|++++|+ ++ .+|..++++ ++|++|++++|. +.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence 99999 99999999999998655 8899999999999999997 87 489888887 999999999987 56
Q ss_pred ccCc--ccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccC-CceEEEEe
Q 040303 218 VIPP--NVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEK-LERYRICI 293 (552)
Q Consensus 218 ~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~-L~~L~l~~ 293 (552)
.+|. . ++++++|++|+++++.. .+..+ .++.+++|+.|++++|.+..+|..+ .+++ |+.|.++.
T Consensus 319 ~ip~~~~-l~~l~~L~~L~L~~N~l----------~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 319 TFPVETS-LQKMKKLGMLECLYNQL----------EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp SCCCHHH-HTTCTTCCEEECCSCCC----------EEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred ccCchhh-hccCCCCCEEeCcCCcC----------ccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 8887 5 89999999999985543 11233 6778888899999888888888877 7777 88888876
Q ss_pred cccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccc-----cCcccccccEEEeecC
Q 040303 294 GRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNK-----LGSYSSQLKHLWVEGC 368 (552)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~c 368 (552)
+............ .+++|+.|++.++.-... .+..+ ....+++|++|++++|
T Consensus 387 N~l~~lp~~~~~~---------------------~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 387 NKLKYIPNIFDAK---------------------SVSVMSAIDFSYNEIGSV--DGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp SCCSSCCSCCCTT---------------------CSSCEEEEECCSSCTTTT--TTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred CcCcccchhhhhc---------------------ccCccCEEECcCCcCCCc--chhhhcccccccccCCCCCEEECcCC
Confidence 6533110100000 012344444444332100 00000 0002234444444444
Q ss_pred C-CCCCcch-hhhhhc----ccccccceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceE
Q 040303 369 Q-APSPKES-KRCKES----TSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTR 442 (552)
Q Consensus 369 ~-~~lp~~~-~~~~~L----i~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~ 442 (552)
. ..+|... ..+++| ++.+.+..+... .+.........+++|+.|++++|.+..++.... ...+++|++
T Consensus 444 ~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~---~~~l~~L~~ 517 (636)
T 4eco_A 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKN---SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR---ATTLPYLVG 517 (636)
T ss_dssp CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS---SSEETTEECTTGGGCCEEECCSSCCCBCCGGGS---TTTCTTCCE
T ss_pred ccCcCCHHHHccCCCCCEEECCCCCCCCcCHH---HhccccccccccCCccEEECcCCcCCccChhhh---hccCCCcCE
Confidence 4 2333222 112222 222222221100 000000011233478888888886665443221 015678888
Q ss_pred EEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCc
Q 040303 443 LIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTL 522 (552)
Q Consensus 443 L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L 522 (552)
|+++++ .++.+|. .+..+++|++|++.++..+..-............+++|+.|++.++. ++.+|.. + +++|
T Consensus 518 L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~---~~~L 589 (636)
T 4eco_A 518 IDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-I---TPNI 589 (636)
T ss_dssp EECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-C---CTTC
T ss_pred EECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-H---hCcC
Confidence 888774 5666665 36678888888886543211100001111134447788888888774 4677654 2 2788
Q ss_pred cEEEeecCCCc
Q 040303 523 ETLEVIRCPEF 533 (552)
Q Consensus 523 ~~L~i~~C~~L 533 (552)
+.|++++|+-.
T Consensus 590 ~~L~Ls~N~l~ 600 (636)
T 4eco_A 590 SVLDIKDNPNI 600 (636)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECcCCCCc
Confidence 88888887543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.4e-29 Score=270.58 Aligned_cols=399 Identities=13% Similarity=0.089 Sum_probs=267.2
Q ss_pred CcccEEEeecCCCcccCCCcc-CCCCceEEEe-ecCCCC-----------------------------------------
Q 040303 86 KFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSL-WTEKSS----------------------------------------- 122 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l-~~~~~~----------------------------------------- 122 (552)
.++..|+++++.+.+.+|..+ .+++|++|++ ++|...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 578899999999988787655 9999999999 554210
Q ss_pred ----------------------------------CcccChhHhhCCCCccEEEeecccccc------------------c
Q 040303 123 ----------------------------------LITLPDNFFRKLTQVRVLDLTYMHLSL------------------L 150 (552)
Q Consensus 123 ----------------------------------~~~~~~~~~~~l~~Lr~L~l~~~~~~~------------------l 150 (552)
+..+|..+ +++++|++|++++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00167664 899999999999999987 9
Q ss_pred cchhc--CCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCc-Ccc--cchhhccCC-------CCCEEeccCCCCC
Q 040303 151 PSSLG--LLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSY-IEQ--LPVEIGQLT-------RLRSLDLRDCDRL 216 (552)
Q Consensus 151 p~~i~--~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~ 216 (552)
|..++ ++++|++|++++|.+.. |..++++++|++|++++|+ ++. +|..+++++ +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 99988 99999999999998655 8899999999999999997 874 898888776 99999999988 5
Q ss_pred CccCc--ccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccC-CceEEEE
Q 040303 217 QVIPP--NVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEK-LERYRIC 292 (552)
Q Consensus 217 ~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~-L~~L~l~ 292 (552)
..+|. . ++++++|+.|+++++.. . ..+ .++.+++|+.|++++|.+..+|..+ .+++ |+.|.++
T Consensus 561 ~~ip~~~~-l~~L~~L~~L~Ls~N~l----------~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 561 EEFPASAS-LQKMVKLGLLDCVHNKV----------R-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp CBCCCHHH-HTTCTTCCEEECTTSCC----------C-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred CccCChhh-hhcCCCCCEEECCCCCc----------c-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc
Confidence 68998 5 89999999999985543 1 233 7889999999999999988999887 7788 9999987
Q ss_pred ecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcc-eeeeccccCcccccccEEEeecCC-C
Q 040303 293 IGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDI-IELVNNKLGSYSSQLKHLWVEGCQ-A 370 (552)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~c~-~ 370 (552)
.+............ ..++|+.|+++++.-... +.++........++|+.|++++|. .
T Consensus 628 ~N~L~~lp~~~~~~---------------------~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 628 HNKLKYIPNIFNAK---------------------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp SSCCCSCCSCCCTT---------------------CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred CCCCCcCchhhhcc---------------------ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC
Confidence 76533111100000 012355555544432111 111111111122355555555554 3
Q ss_pred CCCcchh-hhhhc----ccccccceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEE
Q 040303 371 PSPKESK-RCKES----TSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIV 445 (552)
Q Consensus 371 ~lp~~~~-~~~~L----i~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i 445 (552)
.+|.... .+++| ++.+.+..+.... +........++++|+.|+|++|++..++.... ...+++|+.|++
T Consensus 687 ~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~---~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~---~~~l~~L~~L~L 760 (876)
T 4ecn_A 687 KFPTELFATGSPISTIILSNNLMTSIPENS---LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR---ATTLPYLSNMDV 760 (876)
T ss_dssp SCCHHHHHTTCCCSEEECCSCCCSCCCTTS---SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS---TTTCTTCCEEEC
T ss_pred ccCHHHHccCCCCCEEECCCCcCCccChHH---hccccccccccCCccEEECCCCCCccchHHhh---hccCCCcCEEEe
Confidence 3333321 22222 2222232221000 00000012345589999999997775543321 016789999999
Q ss_pred ecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEE
Q 040303 446 YGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETL 525 (552)
Q Consensus 446 ~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L 525 (552)
++| .+..+|. .+..+++|+.|++.+++.+..-............+++|+.|++++|. +..+|.. + +++|+.|
T Consensus 761 s~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l---~~~L~~L 832 (876)
T 4ecn_A 761 SYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-L---TPQLYIL 832 (876)
T ss_dssp CSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-C---CSSSCEE
T ss_pred CCC-CCCccch--hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh-h---cCCCCEE
Confidence 885 6777775 47789999999998754221110001111134558999999999985 4888765 2 3799999
Q ss_pred EeecCCCcc
Q 040303 526 EVIRCPEFL 534 (552)
Q Consensus 526 ~i~~C~~L~ 534 (552)
++++|+-..
T Consensus 833 dLs~N~l~~ 841 (876)
T 4ecn_A 833 DIADNPNIS 841 (876)
T ss_dssp ECCSCTTCE
T ss_pred ECCCCCCCc
Confidence 999997543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=6.5e-28 Score=256.92 Aligned_cols=194 Identities=19% Similarity=0.215 Sum_probs=144.7
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 167 (552)
++++.+++.+.. +|... .+++++|++++|... .++...|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~-~~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSK-VPDDI-PSSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSS-CCTTS-CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCccc-CCCCC-CCCcCEEECCCCCcC--EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 567888888877 66543 389999999998876 67776679999999999999999876 56789999999999999
Q ss_pred CCCCC--hhhhcCCCCccEEEecCCcCcccc-hhhccCCCCCEEeccCCCCCC-ccCcccccCCCCCcEEEccccccchh
Q 040303 168 SELQD--IAVIGELKNLEILCLRGSYIEQLP-VEIGQLTRLRSLDLRDCDRLQ-VIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 168 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
|.+.. |..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|+++++.....
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 99876 788999999999999999998877 579999999999999988433 46776 89999999999985533110
Q ss_pred hhhhhcccccChhhhcCCCC-CcEEEccCCCCCcCCCcc-cccCCceEEEEec
Q 040303 244 EVEAAGVKNASLEELKRLPN-LTTLELCIPDVNTLPKGL-FFEKLERYRICIG 294 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~ 294 (552)
.......+..++. +..|++++|.+..++... ...+|+.|.+.++
T Consensus 169 -------~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 169 -------TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp -------CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred -------ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 1112222333332 335666666655555443 3334555555443
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.3e-28 Score=264.94 Aligned_cols=369 Identities=14% Similarity=0.146 Sum_probs=263.3
Q ss_pred CCCcc-CCCCceEEEeecCCCCCc----------------ccChhH-hhCCCCccEEEeecccc-ccccchhcCCCCCcE
Q 040303 102 LPEVL-ECPQLQLLSLWTEKSSLI----------------TLPDNF-FRKLTQVRVLDLTYMHL-SLLPSSLGLLTNLRT 162 (552)
Q Consensus 102 ~~~~~-~~~~Lr~L~l~~~~~~~~----------------~~~~~~-~~~l~~Lr~L~l~~~~~-~~lp~~i~~l~~L~~ 162 (552)
+|..+ .+++|++|++++|.+... .+|..+ |.++++|++|++++|.+ ..+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44433 889999999999987631 178876 34999999999999975 578999999999999
Q ss_pred EEccCCC-CCC---hhhhcCCC-------CccEEEecCCcCcccch--hhccCCCCCEEeccCCCCCCccCcccccCCCC
Q 040303 163 LCLYCSE-LQD---IAVIGELK-------NLEILCLRGSYIEQLPV--EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSH 229 (552)
Q Consensus 163 L~l~~~~-~~~---~~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 229 (552)
|++++|. +.. |..++++. +|++|++++|.+..+|. .++++++|++|++++|. +..+| . ++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCc
Confidence 9999998 763 66666655 99999999999999999 89999999999999988 56888 4 899999
Q ss_pred CcEEEccccccchhhhhhhcccccChhhhcCCCC-CcEEEccCCCCCcCCCcc-c--ccCCceEEEEecccccCCC----
Q 040303 230 LEELYIRSFNKWEVEVEAAGVKNASLEELKRLPN-LTTLELCIPDVNTLPKGL-F--FEKLERYRICIGRWCWEDT---- 301 (552)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~~-~--l~~L~~L~l~~~~~~~~~~---- 301 (552)
|+.|+++++.. . ..+..+..+++ |+.|++++|.+..+|..+ . .++|+.|.++.+.......
T Consensus 597 L~~L~Ls~N~l----------~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 597 LTDLKLDYNQI----------E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp ESEEECCSSCC----------S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred ceEEECcCCcc----------c-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 99999985544 1 35566888998 999999999998999876 2 3459999988776432211
Q ss_pred ---CCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccC------cccccccEEEeecCC-CC
Q 040303 302 ---SPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLG------SYSSQLKHLWVEGCQ-AP 371 (552)
Q Consensus 302 ---~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~L~~L~l~~c~-~~ 371 (552)
.........+.+..+.-...+.++...+++|+.|++.++.- ..++..... ..+++|+.|+|++|. ..
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L---~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM---TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC---SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC---CccChHHhccccccccccCCccEEECCCCCCcc
Confidence 11222444555555444445666666667777777776643 233322111 123477777777776 22
Q ss_pred CCcchhhhhhcccccccceeeeccCCCCCccccccc--cCCCcccccccceeeeEeccCCCCccccccCcceEEEEec--
Q 040303 372 SPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKG--GLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYG-- 447 (552)
Q Consensus 372 lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~-- 447 (552)
+|. ... .+++|+.|+|++|.+..++.. ...+++|+.|++++
T Consensus 743 lp~------------------------------~l~~~~l~~L~~L~Ls~N~L~~lp~~-----l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 743 LSD------------------------------DFRATTLPYLSNMDVSYNCFSSFPTQ-----PLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCG------------------------------GGSTTTCTTCCEEECCSSCCSSCCCG-----GGGCTTCCEEECCCCB
T ss_pred chH------------------------------HhhhccCCCcCEEEeCCCCCCccchh-----hhcCCCCCEEECCCCC
Confidence 222 223 789999999999987764332 22889999999987
Q ss_pred ----CCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCccc-------
Q 040303 448 ----CGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVH------- 516 (552)
Q Consensus 448 ----C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~------- 516 (552)
|.-...+|. .+..+++|++|++.+|.- ..++ .. .+++|+.|+|++++- ..+....+.
T Consensus 788 ~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~L-~~Ip--~~------l~~~L~~LdLs~N~l-~~i~~~~~~~~~~~~~ 855 (876)
T 4ecn_A 788 DAEGNRILRQWPT--GITTCPSLIQLQIGSNDI-RKVD--EK------LTPQLYILDIADNPN-ISIDVTSVCPYIEAGM 855 (876)
T ss_dssp CTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBCC--SC------CCSSSCEEECCSCTT-CEEECGGGHHHHHTTC
T ss_pred CcccccccccChH--HHhcCCCCCEEECCCCCC-CccC--Hh------hcCCCCEEECCCCCC-CccChHHccccccchh
Confidence 333445554 588999999999999864 6663 22 247999999999973 333211110
Q ss_pred ccCCCccEEEeecCCCcc
Q 040303 517 IEFPTLETLEVIRCPEFL 534 (552)
Q Consensus 517 ~~~~~L~~L~i~~C~~L~ 534 (552)
..+..-+...|.+|+.|.
T Consensus 856 ~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 856 YVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp CEEECCTTSEEESCGGGC
T ss_pred eeecCCCccccCCCCCcc
Confidence 012222344788999874
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.3e-28 Score=265.30 Aligned_cols=425 Identities=16% Similarity=0.092 Sum_probs=244.8
Q ss_pred cccCcccEEEeecCCCcccCCC---ccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cch---hc
Q 040303 83 GALKFYTSIVLHDSKMNVLLPE---VLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSS---LG 155 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~---i~ 155 (552)
...+++++|++++|.+.+.+|. ...+++|++|++++|.... .+|..++.++++|++|++++|.+... |.. ++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC-cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 4567888999998888765554 3378888899888876543 45555446788888888888877643 333 66
Q ss_pred CCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEc
Q 040303 156 LLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYI 235 (552)
Q Consensus 156 ~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 235 (552)
++++|++|++++|.+.....+.++++|++|++++|.+...+..++++++|++|++++|...+.+|.. ++.+++|++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEEC
T ss_pred cCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEEC
Confidence 7777777777777766533346777777777777766643334777777777777777644445544 677777777777
Q ss_pred cccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC-cCCCcc-c-ccCCceEEEEecccccCC--CCCCccccee
Q 040303 236 RSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN-TLPKGL-F-FEKLERYRICIGRWCWED--TSPTCSRTFR 310 (552)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~~-~-l~~L~~L~l~~~~~~~~~--~~~~~~~~~~ 310 (552)
+++.... .... ..+++|++|++++|.+. .+|..+ . +++|+.|.+..+...... ..........
T Consensus 255 s~n~l~~-----------~~~~-~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 255 SSNQFVG-----------PIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp CSSCCEE-----------SCCC-CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred CCCcccC-----------ccCc-cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence 6443210 0011 14555566666555533 445444 2 255555555444322110 0111222223
Q ss_pred eecCccccc-ccchhHHHHhchheeeeecCCCCC-c----------------------ceeeeccccCcccccccEEEee
Q 040303 311 LLLGTDNCI-SFKSGHIVQLQRIEDLCLSGLPDQ-D----------------------IIELVNNKLGSYSSQLKHLWVE 366 (552)
Q Consensus 311 l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~-~----------------------~~~~~~~~~~~~~~~L~~L~l~ 366 (552)
+.+..+... ..+......+++|+.|++.++.-. . ....+.......+++|++|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 333322222 223333334455555555444320 0 1111221111124455555555
Q ss_pred cCC--CCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEE
Q 040303 367 GCQ--APSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLI 444 (552)
Q Consensus 367 ~c~--~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~ 444 (552)
+|. +.+|..+..+++| +.+...........+...+.+++|+.|++.+|.+....... .+.+++|++|+
T Consensus 403 ~n~l~~~~p~~l~~l~~L------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~ 472 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSEL------VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE----LMYVKTLETLI 472 (768)
T ss_dssp SSEEEEECCGGGGGCTTC------CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEE
T ss_pred CCccccccCHHHhcCCCC------CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH----HcCCCCceEEE
Confidence 554 3444444444433 22222211111122334566788888888888665322211 22678899999
Q ss_pred EecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccE
Q 040303 445 VYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLET 524 (552)
Q Consensus 445 i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~ 524 (552)
+.+|.-...+|. .+..+++|++|++.+|.--..+ +. ....+++|+.|++++|.-...+|.. + ..+++|+.
T Consensus 473 L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~--p~----~~~~l~~L~~L~L~~N~l~~~~p~~-l-~~l~~L~~ 542 (768)
T 3rgz_A 473 LDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEI--PK----WIGRLENLAILKLSNNSFSGNIPAE-L-GDCRSLIW 542 (768)
T ss_dssp CCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCC--CG----GGGGCTTCCEEECCSSCCEEECCGG-G-GGCTTCCE
T ss_pred ecCCcccCcCCH--HHhcCCCCCEEEccCCccCCcC--Ch----HHhcCCCCCEEECCCCcccCcCCHH-H-cCCCCCCE
Confidence 988754445554 4788899999999988633333 22 3445899999999999655566543 3 36899999
Q ss_pred EEeecCCCcchhhccch
Q 040303 525 LEVIRCPEFLLTAHDLT 541 (552)
Q Consensus 525 L~i~~C~~L~~l~~~~~ 541 (552)
|++++|+--..+|....
T Consensus 543 L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp EECCSSEEESBCCGGGG
T ss_pred EECCCCccCCcCChHHh
Confidence 99999976667775543
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.6e-28 Score=260.04 Aligned_cols=369 Identities=12% Similarity=0.121 Sum_probs=266.5
Q ss_pred CCCcc-CCCCceEEEeecCCCCCcc-----------------cChhHhh--CCCCccEEEeecccc-ccccchhcCCCCC
Q 040303 102 LPEVL-ECPQLQLLSLWTEKSSLIT-----------------LPDNFFR--KLTQVRVLDLTYMHL-SLLPSSLGLLTNL 160 (552)
Q Consensus 102 ~~~~~-~~~~Lr~L~l~~~~~~~~~-----------------~~~~~~~--~l~~Lr~L~l~~~~~-~~lp~~i~~l~~L 160 (552)
+|..+ .+++|++|++++|.... . +|..+ + ++++|++|++++|.+ ..+|..++++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 45434 89999999999998663 2 88876 6 899999999999986 4789999999999
Q ss_pred cEEEccCCC-CCC---hhhhcCC------CCccEEEecCCcCcccch--hhccCCCCCEEeccCCCCCCccCcccccCCC
Q 040303 161 RTLCLYCSE-LQD---IAVIGEL------KNLEILCLRGSYIEQLPV--EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLS 228 (552)
Q Consensus 161 ~~L~l~~~~-~~~---~~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 228 (552)
++|++++|. +.. |..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| . ++.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence 999999998 773 7788877 999999999999999999 89999999999999998444888 4 89999
Q ss_pred CCcEEEccccccchhhhhhhcccccChhhhcCCCC-CcEEEccCCCCCcCCCccc---ccCCceEEEEecccccCC--CC
Q 040303 229 HLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPN-LTTLELCIPDVNTLPKGLF---FEKLERYRICIGRWCWED--TS 302 (552)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~~~---l~~L~~L~l~~~~~~~~~--~~ 302 (552)
+|++|+++++... ..+..+..+++ |+.|++++|.+..+|..+. +++|+.|.++.+...... ..
T Consensus 354 ~L~~L~L~~N~l~-----------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 354 KLASLNLAYNQIT-----------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp EESEEECCSSEEE-----------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred CCCEEECCCCccc-----------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 9999999855431 35567888999 9999999999989998762 447999998877643221 11
Q ss_pred C-------CcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccC------cccccccEEEeecCC
Q 040303 303 P-------TCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLG------SYSSQLKHLWVEGCQ 369 (552)
Q Consensus 303 ~-------~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~L~~L~l~~c~ 369 (552)
. .......+.+..+.-...+..+...+++|+.|++.++.-. .++..... ..+++|+.|++++|.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~---~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT---EIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS---BCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC---CcCHHHhccccccccccCCccEEECcCCc
Confidence 1 2234445555554444456666666777777777776542 33322111 112377778777776
Q ss_pred CCCCcchhhhhhcccccccceeeeccCCCCCccccccc--cCCCcccccccceeeeEeccCCCCccccccCcceEEEEec
Q 040303 370 APSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKG--GLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYG 447 (552)
Q Consensus 370 ~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~ 447 (552)
+.. ++.... .+++|+.|++++|.+..++... ..+++|++|++++
T Consensus 500 ------------------l~~-----------lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~-----~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 500 ------------------LTK-----------LSDDFRATTLPYLVGIDLSYNSFSKFPTQP-----LNSSTLKGFGIRN 545 (636)
T ss_dssp ------------------CCB-----------CCGGGSTTTCTTCCEEECCSSCCSSCCCGG-----GGCSSCCEEECCS
T ss_pred ------------------CCc-----------cChhhhhccCCCcCEEECCCCCCCCcChhh-----hcCCCCCEEECCC
Confidence 111 112223 7899999999999877643322 2789999999965
Q ss_pred C------CCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcc-c----
Q 040303 448 C------GELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDV-H---- 516 (552)
Q Consensus 448 C------~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~-~---- 516 (552)
+ .-...+|. .+..+++|++|++.+|.- +.++ .. .+++|+.|++.+++-. ++....+ +
T Consensus 546 N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l-~~ip--~~------~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~ 613 (636)
T 4eco_A 546 QRDAQGNRTLREWPE--GITLCPSLTQLQIGSNDI-RKVN--EK------ITPNISVLDIKDNPNI-SIDLSYVCPYIEA 613 (636)
T ss_dssp CBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBCC--SC------CCTTCCEEECCSCTTC-EEECTTTHHHHHT
T ss_pred CcccccCcccccChH--HHhcCCCCCEEECCCCcC-CccC--Hh------HhCcCCEEECcCCCCc-cccHHhcchhhhc
Confidence 3 33445654 588899999999999874 6662 22 2489999999999632 3221111 0
Q ss_pred --ccCCCccEEEeecCCCcc
Q 040303 517 --IEFPTLETLEVIRCPEFL 534 (552)
Q Consensus 517 --~~~~~L~~L~i~~C~~L~ 534 (552)
..+...+..+|.+|+.|.
T Consensus 614 ~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 614 GMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp TCCEEECCTTSEEESCGGGC
T ss_pred ccceeecCCccccCCCcccc
Confidence 123344567899999875
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=6.1e-28 Score=263.14 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=87.6
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc-ccchhcCCCCCcE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL-LPSSLGLLTNLRT 162 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~~ 162 (552)
..+++++|++++|.+...+|.+..+++|++|++++|.... .+|.. +.++++|++|++++|.+.. +|.. .+++|++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 3556666666666666545554466667777776665442 23333 3666666666666665542 2221 4555555
Q ss_pred EEccCCCCC-C-hhhhcCC-CCccEEEecCCcCc-ccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccc
Q 040303 163 LCLYCSELQ-D-IAVIGEL-KNLEILCLRGSYIE-QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRS 237 (552)
Q Consensus 163 L~l~~~~~~-~-~~~i~~L-~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (552)
|++++|.+. . |..+.++ ++|++|++++|.+. .+|..++++++|++|++++|...+.+|...++++++|++|++++
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 555555543 2 4455443 66777777777665 56666677777777777766643456655456666666666653
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.3e-27 Score=251.43 Aligned_cols=417 Identities=18% Similarity=0.135 Sum_probs=267.5
Q ss_pred ccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~ 161 (552)
..+++++|++++|.+....+..+ .+++|++|++++|... .++.+.|.++++|++|++++|.+..+|.. ++++++|+
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 45789999999999988555444 8999999999999766 66666679999999999999999887765 99999999
Q ss_pred EEEccCCCCCC---hhhhcCCCCccEEEecCCc-Ccccc-hhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 162 TLCLYCSELQD---IAVIGELKNLEILCLRGSY-IEQLP-VEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 162 ~L~l~~~~~~~---~~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
+|++++|.+.. |..++++++|++|++++|. +..+| ..+.++++|++|++++|...+..|.. ++.+++|++|++.
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecc
Confidence 99999999874 5789999999999999996 67776 47999999999999998844445655 8999999999997
Q ss_pred ccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCC---Ccc--cccCCceEEEEeccc---------------
Q 040303 237 SFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLP---KGL--FFEKLERYRICIGRW--------------- 296 (552)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p---~~~--~l~~L~~L~l~~~~~--------------- 296 (552)
.+..... ....++.+++|+.|++++|.+..++ ..+ .+++|+.|.+..+.+
T Consensus 181 ~n~~~~~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 181 LSESAFL----------LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSBSTTH----------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cCccccc----------chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 4432111 1122457899999999999876642 121 345555555543321
Q ss_pred -------------ccCC----------CCCCccc---------------------------ceeeecCcccccccchhHH
Q 040303 297 -------------CWED----------TSPTCSR---------------------------TFRLLLGTDNCISFKSGHI 326 (552)
Q Consensus 297 -------------~~~~----------~~~~~~~---------------------------~~~l~l~~~~~~~~~~~~~ 326 (552)
.... ...+..+ ...+.+..+.-...|.++.
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 1000 0001111 1111221221122344444
Q ss_pred HHhchheeeeecCCCCCcceeeec-cccCcccccccEEEeecCC-CCCCc---chhhhhhcccccccceeeeccCCCCCc
Q 040303 327 VQLQRIEDLCLSGLPDQDIIELVN-NKLGSYSSQLKHLWVEGCQ-APSPK---ESKRCKESTSEMRSNEIILEDHVNVPN 401 (552)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~-~~lp~---~~~~~~~Li~~c~l~~l~~~~~~~~~~ 401 (552)
..+++|+.|+++++.- ...++. ....+.+++|+.|++++|. ..+|. .+..+++| +.+..... ....
T Consensus 331 ~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L------~~L~Ls~N-~l~~ 401 (549)
T 2z81_A 331 QHLKSLEFLDLSENLM--VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL------TSLDISRN-TFHP 401 (549)
T ss_dssp HHCTTCCEEECCSSCC--CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC------CEEECTTC-CCCC
T ss_pred hcCccccEEEccCCcc--ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC------CEEECCCC-CCcc
Confidence 4566666666666553 111111 1112456677777777665 22221 12222222 22222111 1112
Q ss_pred cccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhh
Q 040303 402 TFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEII 481 (552)
Q Consensus 402 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~ 481 (552)
++.....+++|+.|++++|.+..++.. .+++|++|++++| +++.++ ..+++|++|++++| +++.++
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~~l~~~-------~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N-~l~~ip 467 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIRVVKTC-------IPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRN-KLKTLP 467 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSCCCTT-------SCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSSCC
T ss_pred CChhhcccccccEEECCCCCcccccch-------hcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCC-ccCcCC
Confidence 222334566777777777765543221 2357777777775 555543 46789999999987 466553
Q ss_pred ccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecCCCcchhh-ccchhhhh
Q 040303 482 VIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEFLLTA-HDLTKEVR 545 (552)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~-~~~~~~~~ 545 (552)
. ...+++|+.|+++++ .++.++...+. .+++|+.|+++++|-.-..| ......|.
T Consensus 468 ~-------~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~l~~N~~~~~~~~~~~l~~~l 523 (549)
T 2z81_A 468 D-------ASLFPVLLVMKISRN-QLKSVPDGIFD-RLTSLQKIWLHTNPWDCSCPRIDYLSRWL 523 (549)
T ss_dssp C-------GGGCTTCCEEECCSS-CCCCCCTTGGG-GCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred C-------cccCccCCEEecCCC-ccCCcCHHHHh-cCcccCEEEecCCCccCCCccHHHHHHHH
Confidence 2 124889999999997 67777665443 78999999999988655554 23333443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=261.35 Aligned_cols=158 Identities=27% Similarity=0.340 Sum_probs=126.5
Q ss_pred ccccccCccccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cc
Q 040303 75 NSREWLDEGALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PS 152 (552)
Q Consensus 75 ~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~ 152 (552)
+....|. .++++++|++++|.+....+..+ .+++|++|++++|.... .+++..|.++++|++|++++|.+..+ |.
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 3455555 67899999999999988555544 89999999999986543 67666679999999999999999876 88
Q ss_pred hhcCCCCCcEEEccCCCCCC--hhh--hcCCCCccEEEecCCcCccc--chhhccCCCCCEEeccCCCCCCccCcccccC
Q 040303 153 SLGLLTNLRTLCLYCSELQD--IAV--IGELKNLEILCLRGSYIEQL--PVEIGQLTRLRSLDLRDCDRLQVIPPNVLSN 226 (552)
Q Consensus 153 ~i~~l~~L~~L~l~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~ 226 (552)
.++++++|++|++++|.+.. |.. ++++++|++|++++|.+..+ +..++++++|++|++++|......+.. ++.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-ccc
Confidence 89999999999999999875 554 99999999999999988865 357999999999999998733333333 454
Q ss_pred C--CCCcEEEcc
Q 040303 227 L--SHLEELYIR 236 (552)
Q Consensus 227 l--~~L~~L~l~ 236 (552)
+ ++|+.|+++
T Consensus 171 l~~~~L~~L~L~ 182 (844)
T 3j0a_A 171 LQGKTLSFFSLA 182 (844)
T ss_dssp HHHCSSCCCEEC
T ss_pred ccCCccceEECC
Confidence 4 556666555
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=8.8e-27 Score=251.54 Aligned_cols=150 Identities=25% Similarity=0.232 Sum_probs=104.2
Q ss_pred ccCcccEEEeecCCCcccCCC-ccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLPE-VLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~ 161 (552)
.++++++|+++++.+....+. +..+++|++|++++|... .+++..|.++++|++|++++|.+..+|. .++++++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC--CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC--ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 356788888888887773333 337788888888877654 4555556778888888888888777776 477888888
Q ss_pred EEEccCCCCCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCCCCCCccCccccc--CCCCCcEEEcc
Q 040303 162 TLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDCDRLQVIPPNVLS--NLSHLEELYIR 236 (552)
Q Consensus 162 ~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~ 236 (552)
+|++++|.+.. +..++++++|++|++++|.+... |..++++++|++|++++|. +..++...++ .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECC
Confidence 88888887766 35678888888888888877644 4456777778888777765 4444443222 44666666665
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.2e-26 Score=247.12 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=148.6
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 167 (552)
++++..+..+.. +|... -+.+++|++++|... .+++..|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 15 ~~~~c~~~~l~~-iP~~l-~~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLNE-IPGTL-PNSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCSS-CCTTS-CTTCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCccc-CcCCC-CCcCcEEEccCCccC--cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 466777666666 66543 247999999999876 66666679999999999999998865 77899999999999999
Q ss_pred CCCCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCCCCCCccC-cccccCCCCCcEEEccccccchh
Q 040303 168 SELQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDCDRLQVIP-PNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 168 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
|.+.. |..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++ +. +..+++|++|+++++..
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l--- 165 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNAI--- 165 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSCC---
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCcc---
Confidence 99876 68899999999999999999987 5678999999999999988 55553 23 45699999999985543
Q ss_pred hhhhhcccccChhhhcCCCCCc--EEEccCCCCCcCCCcc-cccCCceEEEE
Q 040303 244 EVEAAGVKNASLEELKRLPNLT--TLELCIPDVNTLPKGL-FFEKLERYRIC 292 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~p~~~-~l~~L~~L~l~ 292 (552)
.......++.+++|+ .|++++|.+..++... ....|+.|.+.
T Consensus 166 -------~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 210 (606)
T 3t6q_A 166 -------HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210 (606)
T ss_dssp -------CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred -------cccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence 122456688889999 8999999877766553 44555555543
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-26 Score=238.84 Aligned_cols=342 Identities=20% Similarity=0.253 Sum_probs=244.4
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
..+++++|++.++.+.. ++....+++|++|++++|... .++. +.++++|++|++++|.+..++. ++++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLT--DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccC--Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 46789999999998887 777778999999999998765 5665 5899999999999999988877 9999999999
Q ss_pred EccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchh
Q 040303 164 CLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 164 ~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
++++|.+.....+.++++|++|++++|.+..+| .++++++|++|++.++ ...++. ++++++|++|+++++...
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~-- 190 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS-- 190 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC--
Confidence 999999888445999999999999999988886 5899999999999742 455554 789999999999855431
Q ss_pred hhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccch
Q 040303 244 EVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKS 323 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 323 (552)
....+..+++|+.|++++|.+..++....+++|+.|.+..+.....
T Consensus 191 ----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~------------------------ 236 (466)
T 1o6v_A 191 ----------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI------------------------ 236 (466)
T ss_dssp ----------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC------------------------
T ss_pred ----------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc------------------------
Confidence 2345888999999999999877766544678888888765431110
Q ss_pred hHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC-CCCCcchhhhhhcccccccceeeeccCCCCCcc
Q 040303 324 GHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ-APSPKESKRCKESTSEMRSNEIILEDHVNVPNT 402 (552)
Q Consensus 324 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~ 402 (552)
.....+++|+.|++.++.- ...++ ...+++|++|++++|. ..+|.
T Consensus 237 ~~l~~l~~L~~L~l~~n~l---~~~~~---~~~l~~L~~L~l~~n~l~~~~~---------------------------- 282 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQI---SNLAP---LSGLTKLTELKLGANQISNISP---------------------------- 282 (466)
T ss_dssp GGGGGCTTCSEEECCSSCC---CCCGG---GTTCTTCSEEECCSSCCCCCGG----------------------------
T ss_pred hhhhcCCCCCEEECCCCcc---ccchh---hhcCCCCCEEECCCCccCcccc----------------------------
Confidence 1122467888888887664 22222 3567888888888876 11111
Q ss_pred ccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhc
Q 040303 403 FFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIV 482 (552)
Q Consensus 403 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~ 482 (552)
...+++|+.|++++|.+..+.. . +.+++|+.|++.+| .+..+++ +..+++|++|++.+|. ++.+.
T Consensus 283 ---~~~l~~L~~L~L~~n~l~~~~~--~----~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~- 347 (466)
T 1o6v_A 283 ---LAGLTALTNLELNENQLEDISP--I----SNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS- 347 (466)
T ss_dssp ---GTTCTTCSEEECCSSCCSCCGG--G----GGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG-
T ss_pred ---ccCCCccCeEEcCCCcccCchh--h----cCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch-
Confidence 2456677777777776554322 1 15677777777775 4555543 5567777777777763 43331
Q ss_pred cccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecCC
Q 040303 483 IDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCP 531 (552)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 531 (552)
....+++|+.|++.+|. +..++. + ..+++|+.|++.+|+
T Consensus 348 ------~l~~l~~L~~L~l~~n~-l~~~~~--~-~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 348 ------SLANLTNINWLSAGHNQ-ISDLTP--L-ANLTRITQLGLNDQA 386 (466)
T ss_dssp ------GGTTCTTCCEEECCSSC-CCBCGG--G-TTCTTCCEEECCCEE
T ss_pred ------hhccCCCCCEEeCCCCc-cCccch--h-hcCCCCCEEeccCCc
Confidence 23346777777777763 333332 1 256777777777663
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.5e-26 Score=247.96 Aligned_cols=152 Identities=24% Similarity=0.295 Sum_probs=123.5
Q ss_pred cccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCC
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNL 160 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L 160 (552)
...+++++|+++++.+....+..+ .+++|++|++++|... .+|...|.++++|++|++++|.+..+| ..++++++|
T Consensus 46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS--QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC--ccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 356789999999999888555554 8999999999998765 788776789999999999999988776 578999999
Q ss_pred cEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-h--ccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEc
Q 040303 161 RTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-I--GQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYI 235 (552)
Q Consensus 161 ~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 235 (552)
++|++++|.+.. +..++++++|++|++++|.++.++.. + ..+++|++|++++|. +..+++..++.+++|+.|++
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEEC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhc
Confidence 999999998776 57788999999999999988877654 3 356899999999986 56665554777777777776
Q ss_pred cc
Q 040303 236 RS 237 (552)
Q Consensus 236 ~~ 237 (552)
.+
T Consensus 203 ~~ 204 (680)
T 1ziw_A 203 NN 204 (680)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=240.26 Aligned_cols=407 Identities=16% Similarity=0.132 Sum_probs=247.6
Q ss_pred cCcccEEEeecCCCcccCCC-ccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 85 LKFYTSIVLHDSKMNVLLPE-VLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
.+++++|++++|.+....+. +..+++|++|++++|... .+++..|.++++|++|++++|.++.+|.. .+++|++|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL 95 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC--EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccC--CcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence 36778888887777763332 337778888888877655 45444457778888888888877777766 77788888
Q ss_pred EccCCCCCC---hhhhcCCCCccEEEecCCcCcccchhhccCCCC--CEEeccCCCC--CCccCcccccC----------
Q 040303 164 CLYCSELQD---IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRL--RSLDLRDCDR--LQVIPPNVLSN---------- 226 (552)
Q Consensus 164 ~l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~~l~~---------- 226 (552)
++++|.+.. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|.. ++.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l 172 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVF 172 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEEC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEe
Confidence 888877654 4677788888888888777665 345666666 8888877764 3444443 444
Q ss_pred ----------------CCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCc-----CCCcccccC
Q 040303 227 ----------------LSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNT-----LPKGLFFEK 285 (552)
Q Consensus 227 ----------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~p~~~~l~~ 285 (552)
+++|+.|+++++..... ..........++.+++|+.|+++.+.+.. ++.....++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNK----CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT----THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccc----cceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 33444444442210000 00000122356666777777766554221 111123457
Q ss_pred CceEEEEecccccCC--CC-----CCcccceeeecCcccccccc-hhHHHHh--chheeeeecCCCCCcceeeeccccCc
Q 040303 286 LERYRICIGRWCWED--TS-----PTCSRTFRLLLGTDNCISFK-SGHIVQL--QRIEDLCLSGLPDQDIIELVNNKLGS 355 (552)
Q Consensus 286 L~~L~l~~~~~~~~~--~~-----~~~~~~~~l~l~~~~~~~~~-~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (552)
|+.|.++.+...... .. ........+.+..+. +..| .++...+ .+|+.|++.++.- .... ...
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~~~p~~~~~~~~~~~~L~~L~l~~n~l---~~~~---~~~ 321 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-FGFPQSYIYEIFSNMNIKNFTVSGTRM---VHML---CPS 321 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-CCSCTHHHHHHHHTCCCSEEEEESSCC---CCCC---CCS
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccc-eecchhhhhcccccCceeEEEcCCCcc---cccc---chh
Confidence 777777766533110 01 112222222222221 1334 2222222 4589999988764 2221 124
Q ss_pred ccccccEEEeecCC--CCCCcchhhhhhc----ccccccceeeeccCCCCCccccccccCCCcccccccceeeeE-eccC
Q 040303 356 YSSQLKHLWVEGCQ--APSPKESKRCKES----TSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVER-IWKS 428 (552)
Q Consensus 356 ~~~~L~~L~l~~c~--~~lp~~~~~~~~L----i~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~ 428 (552)
.+++|++|++++|. +..|..+..+++| ++.+.+..+. .++...+.+++|+.|++++|.+.. ++..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS--------KIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH--------HHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc--------cchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 78899999999987 3456555555544 3333333221 122335678999999999998776 5543
Q ss_pred CCCccccccCcceEEEEecCCCccccccchhHhhh-cccceEEEecCCchhhhhccccccccccccCCccEEEecccccc
Q 040303 429 QLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSF-IRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKL 507 (552)
Q Consensus 429 ~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 507 (552)
... .+++|++|++++|.--..+|. .+ ++|++|++++|. ++.++ . ....+++|+.|++.++ .+
T Consensus 394 ~~~----~l~~L~~L~Ls~N~l~~~~~~-----~l~~~L~~L~Ls~N~-l~~ip--~----~~~~l~~L~~L~L~~N-~l 456 (520)
T 2z7x_B 394 DCS----WTKSLLSLNMSSNILTDTIFR-----CLPPRIKVLDLHSNK-IKSIP--K----QVVKLEALQELNVASN-QL 456 (520)
T ss_dssp SCC----CCTTCCEEECCSSCCCGGGGG-----SCCTTCCEEECCSSC-CCCCC--G----GGGGCTTCCEEECCSS-CC
T ss_pred hhc----cCccCCEEECcCCCCCcchhh-----hhcccCCEEECCCCc-ccccc--h----hhhcCCCCCEEECCCC-cC
Confidence 333 679999999999753344433 22 799999999984 65552 2 2335999999999998 78
Q ss_pred ccccCCcccccCCCccEEEeecCCCcch
Q 040303 508 TSFCTGDVHIEFPTLETLEVIRCPEFLL 535 (552)
Q Consensus 508 ~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 535 (552)
+.++...+ ..+++|++|+++++|---.
T Consensus 457 ~~l~~~~~-~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 457 KSVPDGIF-DRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCCCTTTT-TTCTTCCEEECCSSCBCCC
T ss_pred CccCHHHh-ccCCcccEEECcCCCCccc
Confidence 88877634 3789999999999875433
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=242.93 Aligned_cols=411 Identities=18% Similarity=0.175 Sum_probs=248.8
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 167 (552)
++++.++..+.. +|... .+.+++|++++|... .++...|.++++|++|++++|.+..++ ..++++++|++|++++
T Consensus 10 ~~~~c~~~~l~~-ip~~l-~~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYK-IPDNL-PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCSS-CCSSS-CSSCCEEECCSCCCC--EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCccc-cCCCc-cccccEEEccCCccC--ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 445555555555 66533 367999999998766 666666799999999999999998775 5689999999999999
Q ss_pred CCCCC--hhhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCC-ccCcccccCCCCCcEEEccccccchh
Q 040303 168 SELQD--IAVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQ-VIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 168 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
|.+.. +..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|+++++....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~- 163 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS- 163 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE-
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce-
Confidence 99887 5789999999999999999998876 58999999999999987333 36776 8999999999998554311
Q ss_pred hhhhhcccccChhhhcCCCCC----cEEEccCCCCCcCCCcc-cccCCceEEEEecc-----------------------
Q 040303 244 EVEAAGVKNASLEELKRLPNL----TTLELCIPDVNTLPKGL-FFEKLERYRICIGR----------------------- 295 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~----------------------- 295 (552)
.....++.+.+| +.|++++|.+..++... ...+|+.|.+..+.
T Consensus 164 ---------~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 164 ---------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp ---------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred ---------ecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecc
Confidence 122334444444 56777776655544432 22244444443320
Q ss_pred -----------------------------------cccC--CCCCCcccceeeecCcccccccchhHHHHhchheeeeec
Q 040303 296 -----------------------------------WCWE--DTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLS 338 (552)
Q Consensus 296 -----------------------------------~~~~--~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 338 (552)
+... ...........+.+..+.....+.++. .+ +|+.|++.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~-~~-~L~~L~l~ 312 (570)
T 2z63_A 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NF-GWQHLELV 312 (570)
T ss_dssp EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS-CC-CCSEEEEE
T ss_pred ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc-cC-CccEEeec
Confidence 0000 000001111122222211112222221 22 56666665
Q ss_pred CCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhc----ccccc----------------cceeeeccCCC
Q 040303 339 GLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKES----TSEMR----------------SNEIILEDHVN 398 (552)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~L----i~~c~----------------l~~l~~~~~~~ 398 (552)
++... .++. ..+++|++|++.++..........+++| ++.+. ++.+..... .
T Consensus 313 ~n~~~---~l~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~ 384 (570)
T 2z63_A 313 NCKFG---QFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-G 384 (570)
T ss_dssp SCBCS---SCCB----CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-S
T ss_pred cCccc---ccCc----ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-c
Confidence 55432 2211 2344455555544441100000111111 11111 222221111 0
Q ss_pred CCccccccccCCCcccccccceeeeEecc-CCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCch
Q 040303 399 VPNTFFLKGGLPNLETLELYNVNVERIWK-SQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPIL 477 (552)
Q Consensus 399 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l 477 (552)
..........+++|+.|++.++.+..... ... ..+++|++|++.+|. +...++ ..+..+++|++|++.+|.--
T Consensus 385 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF----LSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESCTTSCTT----TTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEG
T ss_pred cccccccccccCCCCEEEccCCccccccchhhh----hcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCc
Confidence 11111224567888888888887665432 112 278899999999874 444333 25778899999999998632
Q ss_pred h-hhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecCCCcchhhcc
Q 040303 478 E-EIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEFLLTAHD 539 (552)
Q Consensus 478 ~-~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~ 539 (552)
. .+ +. ....+++|+.|++.+| .++.+....+. .+++|++|++++| +++.+|.+
T Consensus 459 ~~~~--p~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~ 512 (570)
T 2z63_A 459 ENFL--PD----IFTELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMASN-QLKSVPDG 512 (570)
T ss_dssp GGEE--CS----CCTTCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSS-CCSCCCTT
T ss_pred cccc--hh----hhhcccCCCEEECCCC-ccccCChhhhh-cccCCCEEeCCCC-cCCCCCHH
Confidence 1 22 22 3445899999999998 56666444443 6899999999998 56666543
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=9.2e-26 Score=231.64 Aligned_cols=365 Identities=19% Similarity=0.200 Sum_probs=218.1
Q ss_pred ccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~ 161 (552)
.++++++|++++|.+....+..+ .+++|++|++++|.... .++...|.++++|++|++++|.+..+ |..++++++|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC-EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc-eECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 45778888888888877445444 78888888888876543 56555568888888888888887765 66788888888
Q ss_pred EEEccCCCCCC--hhh--hcCCCCccEEEecCCcCccc-chh-hccCCCCCEEeccCCCCCCccCcccccCC--CCCcEE
Q 040303 162 TLCLYCSELQD--IAV--IGELKNLEILCLRGSYIEQL-PVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNL--SHLEEL 233 (552)
Q Consensus 162 ~L~l~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L 233 (552)
+|++++|.+.. +.. +.++++|++|++++|.+..+ |.. +.++++|++|++++|. +..+++..+..+ .+|+.|
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccc
Confidence 88888888776 444 78888888888888887765 444 7788888888888877 444433335554 577777
Q ss_pred EccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCc-CCCcc-cccCCceEEEEecccccCCCCCCcccceee
Q 040303 234 YIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNT-LPKGL-FFEKLERYRICIGRWCWEDTSPTCSRTFRL 311 (552)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 311 (552)
++.++....... ..........+..+++|+.|++++|.+.. .|..+ ..
T Consensus 186 ~l~~n~l~~~~~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------------------- 235 (455)
T 3v47_A 186 RLSSITLQDMNE--YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---------------------------- 235 (455)
T ss_dssp ECTTCBCTTCST--TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH----------------------------
T ss_pred ccccCcccccch--hhccccccccccccceeeeEecCCCcccccchhhhhcc----------------------------
Confidence 776433211000 00000001123355677778887776432 22111 00
Q ss_pred ecCcccccccchhHHHHhchheeeeecCCCCCc-------ceeeec-cccCcccccccEEEeecCCCCCCcchhhhhhcc
Q 040303 312 LLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQD-------IIELVN-NKLGSYSSQLKHLWVEGCQAPSPKESKRCKEST 383 (552)
Q Consensus 312 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~-~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li 383 (552)
....+|+.|.+.++.... +..... .+..-..++|+.|++++|.
T Consensus 236 ---------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------------- 286 (455)
T 3v47_A 236 ---------------IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-------------- 286 (455)
T ss_dssp ---------------TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC--------------
T ss_pred ---------------ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc--------------
Confidence 001333344433321100 000000 0001123577777777765
Q ss_pred cccccceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhh
Q 040303 384 SEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSF 463 (552)
Q Consensus 384 ~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l 463 (552)
+..+. ....+.+++|+.|++++|.+..+...... .+++|++|++++| .++.+++ ..+..+
T Consensus 287 ----l~~~~----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~-~~~~~l 346 (455)
T 3v47_A 287 ----IFALL----------KSVFSHFTDLEQLTLAQNEINKIDDNAFW----GLTHLLKLNLSQN-FLGSIDS-RMFENL 346 (455)
T ss_dssp ----CCEEC----------TTTTTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSS-CCCEECG-GGGTTC
T ss_pred ----ccccc----------hhhcccCCCCCEEECCCCcccccChhHhc----CcccCCEEECCCC-ccCCcCh-hHhcCc
Confidence 11110 11224577788888888776665443333 6778888888775 5566644 246777
Q ss_pred cccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecCCCcchhh
Q 040303 464 IRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEFLLTA 537 (552)
Q Consensus 464 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 537 (552)
++|++|++.+|. ++.+. ++ ....+++|++|++.++ .++.++...+ ..+++|++|++++++---..|
T Consensus 347 ~~L~~L~Ls~N~-l~~~~-~~----~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 347 DKLEVLDLSYNH-IRALG-DQ----SFLGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSC-CCEEC-TT----TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCEEECCCCc-ccccC-hh----hccccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCCcccCCC
Confidence 888888888774 33331 11 2334778888888876 5666665443 367788888887665433333
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4e-26 Score=229.27 Aligned_cols=305 Identities=16% Similarity=0.162 Sum_probs=209.8
Q ss_pred cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCc
Q 040303 106 LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNL 182 (552)
Q Consensus 106 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L 182 (552)
..++++++|++.++... .+|..+|..+++|++|++++|.+..++. .++.+++|++|++++|.+.. |..++++++|
T Consensus 42 ~~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchh--hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 35688888888887644 7888888888999999999988887654 78889999999999988776 4668889999
Q ss_pred cEEEecCCcCcccchhh-ccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCC
Q 040303 183 EILCLRGSYIEQLPVEI-GQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRL 261 (552)
Q Consensus 183 ~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 261 (552)
++|++++|.++.+|..+ .++++|++|++++|. +..+++..++.+++|++|+++++.. ....++.+
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-------------~~~~~~~l 185 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-------------THVDLSLI 185 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCC-------------SBCCGGGC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcC-------------Cccccccc
Confidence 99999999888888774 788899999998877 5666655578889999998875443 11236677
Q ss_pred CCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCC
Q 040303 262 PNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLP 341 (552)
Q Consensus 262 ~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 341 (552)
++|+.|++++|.+..++. ..+|+.|.+..+.... .+.. .+++|+.|++.++.
T Consensus 186 ~~L~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~----------------------~~~~---~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTLAI---PIAVEELDASHNSINV----------------------VRGP---VNVELTILKLQHNN 237 (390)
T ss_dssp TTCSEEECCSSCCSEEEC---CSSCSEEECCSSCCCE----------------------EECC---CCSSCCEEECCSSC
T ss_pred cccceeecccccccccCC---CCcceEEECCCCeeee----------------------cccc---ccccccEEECCCCC
Confidence 888888888887654432 2355555554332100 0000 12567777777665
Q ss_pred CCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCccccccccee
Q 040303 342 DQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVN 421 (552)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 421 (552)
-... . ....+++|++|++++|. +..+. +.....+++|+.|+++++.
T Consensus 238 l~~~---~---~l~~l~~L~~L~Ls~n~------------------l~~~~----------~~~~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 238 LTDT---A---WLLNYPGLVEVDLSYNE------------------LEKIM----------YHPFVKMQRLERLYISNNR 283 (390)
T ss_dssp CCCC---G---GGGGCTTCSEEECCSSC------------------CCEEE----------SGGGTTCSSCCEEECCSSC
T ss_pred Cccc---H---HHcCCCCccEEECCCCc------------------CCCcC----------hhHccccccCCEEECCCCc
Confidence 4222 1 23467778888777765 11111 1123567788888888887
Q ss_pred eeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEe
Q 040303 422 VERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKM 501 (552)
Q Consensus 422 l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l 501 (552)
+..+..... .+++|++|++++| .+..+|. .+..+++|++|++.+|. ++.+ ....+++|+.|++
T Consensus 284 l~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~--------~~~~~~~L~~L~l 346 (390)
T 3o6n_A 284 LVALNLYGQ-----PIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTL--------KLSTHHTLKNLTL 346 (390)
T ss_dssp CCEEECSSS-----CCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCC--------CCCTTCCCSEEEC
T ss_pred CcccCcccC-----CCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-ccee--------CchhhccCCEEEc
Confidence 766543322 6788888888876 6667765 36778888888888775 4443 1334778888888
Q ss_pred cccc
Q 040303 502 VDLE 505 (552)
Q Consensus 502 ~~c~ 505 (552)
.+++
T Consensus 347 ~~N~ 350 (390)
T 3o6n_A 347 SHND 350 (390)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7764
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.9e-26 Score=232.05 Aligned_cols=323 Identities=20% Similarity=0.218 Sum_probs=252.7
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEE
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILC 186 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~ 186 (552)
.++++++|.+.++... .+|. +..+++|++|++++|.+..+|. ++++++|++|++++|.+.....++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~--~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK--SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred HhccccEEecCCCCCc--cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 4678999999988765 5664 5789999999999999998887 999999999999999988833399999999999
Q ss_pred ecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcE
Q 040303 187 LRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTT 266 (552)
Q Consensus 187 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 266 (552)
+++|.+..+|. +.++++|++|++++|. +..++. ++.+++|+.|++.+... ....++.+++|+.
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~~-------------~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQVT-------------DLKPLANLTTLER 181 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESCC-------------CCGGGTTCTTCCE
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCccc-------------CchhhccCCCCCE
Confidence 99999998875 8999999999999987 666764 79999999999863322 3345899999999
Q ss_pred EEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcce
Q 040303 267 LELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDII 346 (552)
Q Consensus 267 L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 346 (552)
|++++|.+..++....+++|+.|.+..+..... +. ...+++|+.|++.++.-..+
T Consensus 182 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~----------------------~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 182 LDISSNKVSDISVLAKLTNLESLIATNNQISDI----------------------TP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC----------------------GG--GGGCTTCCEEECCSSCCCCC-
T ss_pred EECcCCcCCCChhhccCCCCCEEEecCCccccc----------------------cc--ccccCCCCEEECCCCCcccc-
Confidence 999999988776544788899888765431110 00 22468899999988765322
Q ss_pred eeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceeeeEec
Q 040303 347 ELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIW 426 (552)
Q Consensus 347 ~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 426 (552)
. ....+++|+.|++++|. +..+ .....+++|+.|++++|.+..+.
T Consensus 237 --~---~l~~l~~L~~L~l~~n~------------------l~~~------------~~~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 237 --G---TLASLTNLTDLDLANNQ------------------ISNL------------APLSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp --G---GGGGCTTCSEEECCSSC------------------CCCC------------GGGTTCTTCSEEECCSSCCCCCG
T ss_pred --h---hhhcCCCCCEEECCCCc------------------cccc------------hhhhcCCCCCEEECCCCccCccc
Confidence 2 23578999999999987 1111 11357899999999999877654
Q ss_pred cCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccc
Q 040303 427 KSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEK 506 (552)
Q Consensus 427 ~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 506 (552)
. .. .+++|+.|++.+| .++.+++ +..+++|++|++.+|. ++.+. ....+++|+.|++.+| .
T Consensus 282 ~--~~----~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-------~~~~l~~L~~L~l~~n-~ 342 (466)
T 1o6v_A 282 P--LA----GLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDIS-------PVSSLTKLQRLFFYNN-K 342 (466)
T ss_dssp G--GT----TCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCG-------GGGGCTTCCEEECCSS-C
T ss_pred c--cc----CCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCch-------hhccCccCCEeECCCC-c
Confidence 3 22 7899999999996 6777765 7899999999999985 54442 1345899999999999 5
Q ss_pred cccccCCcccccCCCccEEEeecCCCc
Q 040303 507 LTSFCTGDVHIEFPTLETLEVIRCPEF 533 (552)
Q Consensus 507 L~~~~~~~~~~~~~~L~~L~i~~C~~L 533 (552)
++.++. + ..+++|+.|++++|+--
T Consensus 343 l~~~~~--l-~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 343 VSDVSS--L-ANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCCCGG--G-TTCTTCCEEECCSSCCC
T ss_pred cCCchh--h-ccCCCCCEEeCCCCccC
Confidence 666632 2 37899999999998643
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.6e-25 Score=221.33 Aligned_cols=101 Identities=28% Similarity=0.412 Sum_probs=50.4
Q ss_pred hCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEecc
Q 040303 132 RKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLR 211 (552)
Q Consensus 132 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (552)
..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.+.++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence 445555555555555544444 45555555555555554443345555555555555555554443 4455555555555
Q ss_pred CCCCCCccCcccccCCCCCcEEEcc
Q 040303 212 DCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 212 ~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
+|.....++. ++.+++|++|++.
T Consensus 141 ~n~~~~~~~~--~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 141 ANHNLSDLSP--LSNMTGLNYLTVT 163 (347)
T ss_dssp TCTTCCCCGG--GTTCTTCCEEECC
T ss_pred CCCCcccccc--hhhCCCCcEEEec
Confidence 5543333332 4555555555554
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=8.8e-26 Score=237.54 Aligned_cols=388 Identities=18% Similarity=0.128 Sum_probs=252.1
Q ss_pred cccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc--ccchhcCCCC
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL--LPSSLGLLTN 159 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~l~~ 159 (552)
...+++++|++++|.+....+..+ .+++|++|++++|... .++...|+++++|++|++++|.+.. .|..++++++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS--SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC--ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 457889999999999988554444 8999999999999776 7888877999999999999999874 5778999999
Q ss_pred CcEEEccCCC-CCC-h-hhhcCCCCccEEEecCCcCcc-cchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEc
Q 040303 160 LRTLCLYCSE-LQD-I-AVIGELKNLEILCLRGSYIEQ-LPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYI 235 (552)
Q Consensus 160 L~~L~l~~~~-~~~-~-~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 235 (552)
|++|++++|. +.. + ..+.++++|++|++++|.+.. .|..++++++|++|+++.+. ...+|...++.+++|+.|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEc
Confidence 9999999998 554 3 689999999999999998884 78889999999999999987 56777665578999999999
Q ss_pred cccccchhhhhh-h--------------------cccccChhhhcCCCCCcEEEccCCCCCcCCCc--------c-----
Q 040303 236 RSFNKWEVEVEA-A--------------------GVKNASLEELKRLPNLTTLELCIPDVNTLPKG--------L----- 281 (552)
Q Consensus 236 ~~~~~~~~~~~~-~--------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~--------~----- 281 (552)
+++......... . .........+..+++|+.+++++|....++.. -
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 854321100000 0 00000001112333444444443321111000 0
Q ss_pred ------------------------cccCCceEEEEecccccCCCC--CCcccceeeecCccccccc-c--hhHHHHhchh
Q 040303 282 ------------------------FFEKLERYRICIGRWCWEDTS--PTCSRTFRLLLGTDNCISF-K--SGHIVQLQRI 332 (552)
Q Consensus 282 ------------------------~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~l~l~~~~~~~~-~--~~~~~~l~~L 332 (552)
..++|+.|.+..+........ ........+.+..+.-... + ......+++|
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 123444455444332111000 0122333444433321111 1 1112346788
Q ss_pred eeeeecCCCCCcceeeeccccCcccccccEEEeecCC-CCCCcchhhhhhc----ccccccceeeeccCCCCCccccccc
Q 040303 333 EDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ-APSPKESKRCKES----TSEMRSNEIILEDHVNVPNTFFLKG 407 (552)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~~~~~~L----i~~c~l~~l~~~~~~~~~~~~~~~~ 407 (552)
+.|+++++.-..+... ......+++|++|++++|. ..+|..+..+++| ++.+.+..+. . .
T Consensus 364 ~~L~Ls~N~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~-----------~--~ 428 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKT--GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK-----------T--C 428 (549)
T ss_dssp CEEECTTSCCCCHHHH--HHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCC-----------T--T
T ss_pred cEEEccCCcccccccc--hhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccccc-----------c--h
Confidence 8888887654222110 0123567888888888887 5566555444443 3333333221 0 1
Q ss_pred cCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhcccccc
Q 040303 408 GLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQE 487 (552)
Q Consensus 408 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 487 (552)
.+++|+.|++++|+++.+. . .+++|++|++++| +++.+|. ...+++|++|++++|. ++.++. +
T Consensus 429 ~~~~L~~L~Ls~N~l~~~~----~----~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N~-l~~~~~-~--- 491 (549)
T 2z81_A 429 IPQTLEVLDVSNNNLDSFS----L----FLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRNQ-LKSVPD-G--- 491 (549)
T ss_dssp SCTTCSEEECCSSCCSCCC----C----CCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSSC-CCCCCT-T---
T ss_pred hcCCceEEECCCCChhhhc----c----cCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCCc-cCCcCH-H---
Confidence 2469999999999876542 1 7899999999996 7888886 4679999999999974 555421 1
Q ss_pred ccccccCCccEEEeccccc
Q 040303 488 RKNVVFPQLQFLKMVDLEK 506 (552)
Q Consensus 488 ~~~~~l~~L~~L~l~~c~~ 506 (552)
....+++|+.|++.+++-
T Consensus 492 -~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 492 -IFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -GGGGCTTCCEEECCSSCB
T ss_pred -HHhcCcccCEEEecCCCc
Confidence 244589999999998874
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.5e-25 Score=221.44 Aligned_cols=304 Identities=17% Similarity=0.207 Sum_probs=232.9
Q ss_pred cccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcE
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRT 162 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 162 (552)
...+++++|+++++.+.. ++....+++|++|++++|... .++. +.++++|++|++++|.+..+| .++++++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~~~~~~~~L~~L~l~~n~i~--~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQGIEYLTNLEYLNLNGNQIT--DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCcccc-chhhhhcCCccEEEccCCccc--cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 457889999999999887 777778999999999998765 5665 689999999999999998875 5999999999
Q ss_pred EEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccch
Q 040303 163 LCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWE 242 (552)
Q Consensus 163 L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 242 (552)
|++++|.+.....+.++++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|++|+++++...
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~- 190 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE- 190 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC-
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc-
Confidence 9999999988444999999999999999544444569999999999999987 666665 789999999999855431
Q ss_pred hhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccc
Q 040303 243 VEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFK 322 (552)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 322 (552)
....+..+++|+.|++++|.+..++..
T Consensus 191 -----------~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------------------------ 217 (347)
T 4fmz_A 191 -----------DISPLASLTSLHYFTAYVNQITDITPV------------------------------------------ 217 (347)
T ss_dssp -----------CCGGGGGCTTCCEEECCSSCCCCCGGG------------------------------------------
T ss_pred -----------ccccccCCCccceeecccCCCCCCchh------------------------------------------
Confidence 223378889999999998876654321
Q ss_pred hhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCcc
Q 040303 323 SGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNT 402 (552)
Q Consensus 323 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~ 402 (552)
..+++|+.|++.++.- ...+. ...+++|++|++++|. +..
T Consensus 218 ----~~~~~L~~L~l~~n~l---~~~~~---~~~l~~L~~L~l~~n~------------------l~~------------ 257 (347)
T 4fmz_A 218 ----ANMTRLNSLKIGNNKI---TDLSP---LANLSQLTWLEIGTNQ------------------ISD------------ 257 (347)
T ss_dssp ----GGCTTCCEEECCSSCC---CCCGG---GTTCTTCCEEECCSSC------------------CCC------------
T ss_pred ----hcCCcCCEEEccCCcc---CCCcc---hhcCCCCCEEECCCCc------------------cCC------------
Confidence 1346677777776654 22222 3567889999998876 111
Q ss_pred ccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhc
Q 040303 403 FFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIV 482 (552)
Q Consensus 403 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~ 482 (552)
......+++|+.|++++|.+..+.. . ..+++|++|++++| .+...++ ..+..+++|++|++.+|+ ++.++.
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~~~~--~----~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 258 INAVKDLTKLKMLNVGSNQISDISV--L----NNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGG--G----GGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred ChhHhcCCCcCEEEccCCccCCChh--h----cCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC
Confidence 0123568899999999987766421 1 27899999999997 4555544 357889999999999987 555422
Q ss_pred cccccccccccCCccEEEecccc
Q 040303 483 IDQQERKNVVFPQLQFLKMVDLE 505 (552)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~l~~c~ 505 (552)
...+++|++|++.+|+
T Consensus 329 -------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 -------LASLSKMDSADFANQV 344 (347)
T ss_dssp -------GGGCTTCSEESSSCC-
T ss_pred -------hhhhhccceeehhhhc
Confidence 3458999999999885
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.4e-25 Score=222.50 Aligned_cols=302 Identities=15% Similarity=0.157 Sum_probs=235.9
Q ss_pred ccCcccEEEeecCCCcccCCCc--cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCC
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEV--LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNL 160 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L 160 (552)
...+++++++.++.+.. +|.. ..+++|++|++.++... .++...|..+++|++|++++|.+..+| ..++++++|
T Consensus 43 ~l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhh-CChhHhcccccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 46889999999999887 6653 37999999999998765 677766799999999999999998775 458999999
Q ss_pred cEEEccCCCCCC-hhh-hcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccc
Q 040303 161 RTLCLYCSELQD-IAV-IGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRS 237 (552)
Q Consensus 161 ~~L~l~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (552)
++|++++|.+.. |.. +.++++|++|++++|.+..++. .+.++++|++|++++|. +..++ ++.+++|+.|++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccc
Confidence 999999999888 544 6999999999999999987754 58999999999999987 66664 57789999999975
Q ss_pred cccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCccc
Q 040303 238 FNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDN 317 (552)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~ 317 (552)
+.. ..+....+|+.|++++|.+..+|... .++|+.|.+..+....
T Consensus 196 n~l---------------~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~------------------- 240 (390)
T 3o6n_A 196 NLL---------------STLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD------------------- 240 (390)
T ss_dssp SCC---------------SEEECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSSCCCC-------------------
T ss_pred ccc---------------cccCCCCcceEEECCCCeeeeccccc-cccccEEECCCCCCcc-------------------
Confidence 433 33455678999999999988876654 4788888876543110
Q ss_pred ccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCC
Q 040303 318 CISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHV 397 (552)
Q Consensus 318 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~ 397 (552)
. .....+++|+.|++.++.- ....+ ..+..+++|++|++++|. +..+.
T Consensus 241 ----~-~~l~~l~~L~~L~Ls~n~l---~~~~~-~~~~~l~~L~~L~L~~n~------------------l~~~~----- 288 (390)
T 3o6n_A 241 ----T-AWLLNYPGLVEVDLSYNEL---EKIMY-HPFVKMQRLERLYISNNR------------------LVALN----- 288 (390)
T ss_dssp ----C-GGGGGCTTCSEEECCSSCC---CEEES-GGGTTCSSCCEEECCSSC------------------CCEEE-----
T ss_pred ----c-HHHcCCCCccEEECCCCcC---CCcCh-hHccccccCCEEECCCCc------------------CcccC-----
Confidence 1 1233578999999998764 33322 234578999999999987 22211
Q ss_pred CCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCC
Q 040303 398 NVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECP 475 (552)
Q Consensus 398 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~ 475 (552)
.....+++|+.|++++|.+..++... +.+++|++|++.+| .++.++ +..+++|++|++.+++
T Consensus 289 ------~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 289 ------LYGQPIPTLKVLDLSHNHLLHVERNQ-----PQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ------CSSSCCTTCCEEECCSSCCCCCGGGH-----HHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred ------cccCCCCCCCEEECCCCcceecCccc-----cccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 12256899999999999887654332 27899999999996 577774 5678999999999986
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=8.6e-25 Score=230.30 Aligned_cols=403 Identities=16% Similarity=0.113 Sum_probs=205.9
Q ss_pred CcccEEEeecCCCcccCCCc-cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEE
Q 040303 86 KFYTSIVLHDSKMNVLLPEV-LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLC 164 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 164 (552)
+++++|++++|.+....+.. ..+++|++|++++|... .++.+.|.++++|++|++++|.++.+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC--EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC--cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 45555555555555522222 25555555555555443 34333345555555555555555555554 555555555
Q ss_pred ccCCCCCC---hhhhcCCCCccEEEecCCcCcccchhhccCCCC--CEEeccCCCC--CCccCcccccCC----------
Q 040303 165 LYCSELQD---IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRL--RSLDLRDCDR--LQVIPPNVLSNL---------- 227 (552)
Q Consensus 165 l~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~~l~~l---------- 227 (552)
+++|.+.. |..++++++|++|+++++.+.. ..+..+++| ++|++++|.. ....|.. +..+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETES-LQIPNTTVLHLVFH 204 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEECCEEEEEEEEC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCccc-ccccCcceEEEEec
Confidence 55555443 2455555555555555555443 123333333 5555555542 2222322 3322
Q ss_pred ----------------CCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC-----cCCCcccccCC
Q 040303 228 ----------------SHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN-----TLPKGLFFEKL 286 (552)
Q Consensus 228 ----------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~p~~~~l~~L 286 (552)
++|+.|++.++... . .........+..+++|+.+++..+.+. .++......+|
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~-----~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDEN-C-----QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTT-H-----HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred CccchhhhhhhcccccceEEEecccccccc-c-----chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 22333333211000 0 000001122333444444433322211 11111122366
Q ss_pred ceEEEEecccccCC-CCC-----CcccceeeecCcccccccch-hHHHHh--chheeeeecCCCCCcceeeeccccCccc
Q 040303 287 ERYRICIGRWCWED-TSP-----TCSRTFRLLLGTDNCISFKS-GHIVQL--QRIEDLCLSGLPDQDIIELVNNKLGSYS 357 (552)
Q Consensus 287 ~~L~l~~~~~~~~~-~~~-----~~~~~~~l~l~~~~~~~~~~-~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 357 (552)
+.|.+..+...... ... ...+.+.+......-...+. +....+ .+|+.|++.++.- .... ....+
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~---~~~~---~~~~l 352 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF---IHMV---CPPSP 352 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC---CCCC---CCSSC
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc---cccc---CccCC
Confidence 66666655422110 000 11222211111111112232 222221 4588888887654 1211 12467
Q ss_pred ccccEEEeecCC--CCCCcchhhhhhc----ccccccceeeeccCCCCCccccccccCCCcccccccceeeeE-eccCCC
Q 040303 358 SQLKHLWVEGCQ--APSPKESKRCKES----TSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVER-IWKSQL 430 (552)
Q Consensus 358 ~~L~~L~l~~c~--~~lp~~~~~~~~L----i~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~ 430 (552)
++|++|++++|. +..|..+..+++| +.++.+..+ +......+.+++|+.|++++|.+.. ++....
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF--------FKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT--------THHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc--------ccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 889999998887 3355555444444 223222221 1222335678999999999997765 444333
Q ss_pred CccccccCcceEEEEecCCCccccccchhHhhh-cccceEEEecCCchhhhhccccccccccccCCccEEEecccccccc
Q 040303 431 PAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSF-IRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTS 509 (552)
Q Consensus 431 ~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 509 (552)
. .+++|++|++++|.--..+|. .+ ++|++|++.+| .++.++ .+ ...+++|+.|++.++ .++.
T Consensus 425 ~----~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N-~l~~ip--~~----~~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 425 A----WAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNN-RIMSIP--KD----VTHLQALQELNVASN-QLKS 487 (562)
T ss_dssp C----CCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSS-CCCCCC--TT----TTSSCCCSEEECCSS-CCCC
T ss_pred c----CcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCC-cCcccC--hh----hcCCCCCCEEECCCC-CCCC
Confidence 2 779999999999743233332 33 69999999998 576653 22 235899999999997 6778
Q ss_pred ccCCcccccCCCccEEEeecCCCc
Q 040303 510 FCTGDVHIEFPTLETLEVIRCPEF 533 (552)
Q Consensus 510 ~~~~~~~~~~~~L~~L~i~~C~~L 533 (552)
++...+ ..+++|+.|+++++|--
T Consensus 488 l~~~~~-~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 488 VPDGVF-DRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCTTST-TTCTTCCCEECCSCCBC
T ss_pred CCHHHH-hcCCCCCEEEecCCCcC
Confidence 877633 37899999999998754
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-25 Score=236.09 Aligned_cols=304 Identities=16% Similarity=0.157 Sum_probs=223.2
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCcc
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLE 183 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~ 183 (552)
.+++++.+.+.++... .+|..+|.++++|++|++++|.+..+|. .++.+++|++|++++|.+.. |..++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~--~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCC--CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 5678899998887654 7888888889999999999998887654 78899999999999998877 45678999999
Q ss_pred EEEecCCcCcccchhh-ccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCC
Q 040303 184 ILCLRGSYIEQLPVEI-GQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLP 262 (552)
Q Consensus 184 ~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 262 (552)
+|++++|.+..+|..+ +++++|++|++++|. +..+++..++.+++|++|+++++.. ....++.++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-------------~~~~~~~l~ 192 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-------------THVDLSLIP 192 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCC-------------SBCCGGGCT
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCC-------------CCcChhhhh
Confidence 9999999988888774 889999999999887 5666655578899999999885543 112366778
Q ss_pred CCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCC
Q 040303 263 NLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPD 342 (552)
Q Consensus 263 ~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 342 (552)
+|+.|++++|.+..++. ...|+.|.++.+..... +.. ..++|+.|++.++.-
T Consensus 193 ~L~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~~----------------------~~~---~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 193 SLFHANVSYNLLSTLAI---PIAVEELDASHNSINVV----------------------RGP---VNVELTILKLQHNNL 244 (597)
T ss_dssp TCSEEECCSSCCSEEEC---CTTCSEEECCSSCCCEE----------------------ECS---CCSCCCEEECCSSCC
T ss_pred hhhhhhcccCccccccC---CchhheeeccCCccccc----------------------ccc---cCCCCCEEECCCCCC
Confidence 89999998887665432 34566666544321100 000 125788888877664
Q ss_pred CcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceee
Q 040303 343 QDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNV 422 (552)
Q Consensus 343 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 422 (552)
... .....+++|+.|++++|. +..+. +...+.+++|+.|++++|.+
T Consensus 245 ~~~------~~l~~l~~L~~L~Ls~N~------------------l~~~~----------~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 245 TDT------AWLLNYPGLVEVDLSYNE------------------LEKIM----------YHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp CCC------GGGGGCTTCSEEECCSSC------------------CCEEE----------SGGGTTCSSCCEEECTTSCC
T ss_pred CCC------hhhccCCCCCEEECCCCc------------------cCCCC----------HHHhcCccCCCEEECCCCCC
Confidence 221 123567888888888876 11111 12336789999999999988
Q ss_pred eEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEec
Q 040303 423 ERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMV 502 (552)
Q Consensus 423 ~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 502 (552)
..++.... .+++|+.|++++| .+..+|. .+..+++|+.|++.+|. +..+ ....+++|+.|++.
T Consensus 291 ~~l~~~~~-----~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~--------~~~~~~~L~~L~l~ 353 (597)
T 3oja_B 291 VALNLYGQ-----PIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTL--------KLSTHHTLKNLTLS 353 (597)
T ss_dssp CEEECSSS-----CCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCC--------CCCTTCCCSEEECC
T ss_pred CCCCcccc-----cCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCc--------ChhhcCCCCEEEee
Confidence 77654332 6899999999986 6777876 47889999999999986 4443 23458899999999
Q ss_pred ccc
Q 040303 503 DLE 505 (552)
Q Consensus 503 ~c~ 505 (552)
+++
T Consensus 354 ~N~ 356 (597)
T 3oja_B 354 HND 356 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=239.66 Aligned_cols=171 Identities=19% Similarity=0.127 Sum_probs=133.0
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccc-cccc-cchhcCCCCCcEEEcc
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMH-LSLL-PSSLGLLTNLRTLCLY 166 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~i~~l~~L~~L~l~ 166 (552)
+..+.+++.+.. +|. ..+++++|++++|... .++...|.++++|++|++++|. +..+ |..++++++|++|+++
T Consensus 7 ~~~dcs~~~L~~-vP~--lp~~l~~LdLs~N~i~--~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ--VLNTTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSC-CCS--SCTTCCEEEEESCCCC--EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCC-CCC--CCCCcCEEECCCCcCC--ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 456677777777 777 5689999999999776 5555556999999999999994 4566 7789999999999999
Q ss_pred CCCCCC--hhhhcCCCCccEEEecCCcCcc-cchh--hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccc
Q 040303 167 CSELQD--IAVIGELKNLEILCLRGSYIEQ-LPVE--IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKW 241 (552)
Q Consensus 167 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (552)
+|.+.. |..++++++|++|++++|.+.. +|.. ++++++|++|++++|...+..+...++++++|++|+++++..
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i- 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI- 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC-
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC-
Confidence 999886 7899999999999999998874 5655 899999999999999843333433489999999999985433
Q ss_pred hhhhhhhcccccChhhhcCC--CCCcEEEccCCCC
Q 040303 242 EVEVEAAGVKNASLEELKRL--PNLTTLELCIPDV 274 (552)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~ 274 (552)
.......+..+ ++|+.|+++.|.+
T Consensus 161 ---------~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 161 ---------FLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp ---------CCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred ---------CeeCHHHcccccCCccceEECCCCcc
Confidence 11122334433 5677777776653
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.9e-25 Score=230.94 Aligned_cols=376 Identities=12% Similarity=0.071 Sum_probs=232.0
Q ss_pred cccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc--ccchhcCCCC
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL--LPSSLGLLTN 159 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~l~~ 159 (552)
...+++++|++++|.+....|..+ .+++|++|++++|... .+|.. .+++|++|++++|.+.. +|..++++++
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV--KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee--ecCcc---ccCCccEEeccCCccccccchhhhccCCc
Confidence 357889999999999988556544 8999999999999776 67764 79999999999999875 6789999999
Q ss_pred CcEEEccCCCCCChhhhcCCCCc--cEEEecCCcC--c-ccchhhcc--------------------------CCCCCEE
Q 040303 160 LRTLCLYCSELQDIAVIGELKNL--EILCLRGSYI--E-QLPVEIGQ--------------------------LTRLRSL 208 (552)
Q Consensus 160 L~~L~l~~~~~~~~~~i~~L~~L--~~L~l~~~~l--~-~lp~~i~~--------------------------l~~L~~L 208 (552)
|++|++++|.+.. ..+..+.+| ++|++++|.+ . ..|..+.. +++|+.|
T Consensus 117 L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 117 LKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp CCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred ceEEEecCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 9999999999876 456667777 9999999977 2 44554444 6677777
Q ss_pred eccCCC-------CCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC-cCCCc
Q 040303 209 DLRDCD-------RLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN-TLPKG 280 (552)
Q Consensus 209 ~l~~~~-------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~ 280 (552)
++++|. ..+.++ . ++.+++|+.|++.++....... ...... ...++|+.|++++|.+. .+|..
T Consensus 196 ~l~~n~~~~~~~~~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~~------~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILA-K-LQTNPKLSNLTLNNIETTWNSF------IRILQL-VWHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp CEEECCSTTTTHHHHHHHH-G-GGGCTTCCEEEEEEEEEEHHHH------HHHHHH-HHTSSCSEEEEEEEEEESCCCCC
T ss_pred cccccccccccceeecchh-h-hccccchhhccccccccCHHHH------HHHHHH-hhhCcccEEEeecccccCccccc
Confidence 777764 223333 3 6788888888887432211000 000011 11346666666666543 45544
Q ss_pred c------cccCCceEEEEecccccCCC----CCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeec
Q 040303 281 L------FFEKLERYRICIGRWCWEDT----SPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVN 350 (552)
Q Consensus 281 ~------~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 350 (552)
+ .+++|+.+.+..+....... .....+...+.+..+.-...+ ....+++|+.|+++++.-.. ..+.
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~ 342 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD--TVFE 342 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT--TTTT
T ss_pred hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh--hhhh
Confidence 3 24444444444433200000 000011122222111111111 00245677777777665411 1111
Q ss_pred cccCcccccccEEEeecCC-C---CCCcchhhhhhc----ccccccceeeeccCCCCCcccc-ccccCCCccccccccee
Q 040303 351 NKLGSYSSQLKHLWVEGCQ-A---PSPKESKRCKES----TSEMRSNEIILEDHVNVPNTFF-LKGGLPNLETLELYNVN 421 (552)
Q Consensus 351 ~~~~~~~~~L~~L~l~~c~-~---~lp~~~~~~~~L----i~~c~l~~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 421 (552)
....+++|++|++++|. . .+|..+..+++| ++++.+.. .+.. ....+++|+.|++++|.
T Consensus 343 --~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~----------~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 343 --NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY----------DEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp --TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC----------CGGGCSCCCCTTCCEEECCSSC
T ss_pred --hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc----------ccccchhccCccCCEEECcCCC
Confidence 22456777777777776 2 122223333333 22322222 0111 13567899999999997
Q ss_pred eeEeccCCCCcccccc-CcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEE
Q 040303 422 VERIWKSQLPAMSCGI-QTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLK 500 (552)
Q Consensus 422 l~~~~~~~~~~~~~~l-~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~ 500 (552)
+...... .+ ++|+.|++++| +++.+|. .+..+++|++|++.+|. ++.++. . ....+++|++|+
T Consensus 411 l~~~~~~-------~l~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N~-l~~l~~--~---~~~~l~~L~~L~ 474 (520)
T 2z7x_B 411 LTDTIFR-------CLPPRIKVLDLHSN-KIKSIPK--QVVKLEALQELNVASNQ-LKSVPD--G---IFDRLTSLQKIW 474 (520)
T ss_dssp CCGGGGG-------SCCTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSSC-CCCCCT--T---TTTTCTTCCEEE
T ss_pred CCcchhh-------hhcccCCEEECCCC-cccccch--hhhcCCCCCEEECCCCc-CCccCH--H---HhccCCcccEEE
Confidence 7532211 22 79999999996 7888886 35699999999999984 666532 1 234589999999
Q ss_pred ecccc
Q 040303 501 MVDLE 505 (552)
Q Consensus 501 l~~c~ 505 (552)
+.+++
T Consensus 475 l~~N~ 479 (520)
T 2z7x_B 475 LHTNP 479 (520)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 99886
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.3e-24 Score=232.72 Aligned_cols=147 Identities=26% Similarity=0.251 Sum_probs=122.1
Q ss_pred ccccccCccccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-
Q 040303 75 NSREWLDEGALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS- 152 (552)
Q Consensus 75 ~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~- 152 (552)
+....|. ..+.++++|++++|.+....+..+ .+++|++|++++|... .++++.|.++++|++|+|++|+++.+|.
T Consensus 42 ~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~--~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC--CcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 3445443 456789999999999998434444 8999999999999766 7888888999999999999999999886
Q ss_pred hhcCCCCCcEEEccCCCCCC-h-hhhcCCCCccEEEecCCcCc--ccchhhccCCCCCEEeccCCCCCCccCccccc
Q 040303 153 SLGLLTNLRTLCLYCSELQD-I-AVIGELKNLEILCLRGSYIE--QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLS 225 (552)
Q Consensus 153 ~i~~l~~L~~L~l~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~ 225 (552)
.++++++|++|++++|.++. + ..++++++|++|++++|.+. .+|..++.+++|++|++++|. +..++...+.
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~ 194 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 194 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence 57999999999999999887 4 46899999999999999887 467889999999999999986 5555443333
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-24 Score=228.11 Aligned_cols=302 Identities=16% Similarity=0.167 Sum_probs=235.8
Q ss_pred ccCcccEEEeecCCCcccCCCc-c-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCC
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEV-L-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNL 160 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L 160 (552)
...+++.+++.++.+.. +|.. + .+++|++|++++|... .++...|..+++|++|++++|.+..+|. .++++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 45788999999998887 6643 3 7999999999998765 6776567999999999999999988765 46999999
Q ss_pred cEEEccCCCCCC-hhh-hcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccc
Q 040303 161 RTLCLYCSELQD-IAV-IGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRS 237 (552)
Q Consensus 161 ~~L~l~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (552)
++|++++|.+.. |.. ++++++|++|++++|.+..+|. .++.+++|++|++++|. +..++ ++.+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhccc
Confidence 999999999888 544 6999999999999999987665 58999999999999987 66665 46789999999975
Q ss_pred cccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCccc
Q 040303 238 FNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDN 317 (552)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~ 317 (552)
+.. ..+....+|+.|++++|.+..++..+ .++|+.|.+.++...
T Consensus 202 n~l---------------~~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~-------------------- 245 (597)
T 3oja_B 202 NLL---------------STLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLT-------------------- 245 (597)
T ss_dssp SCC---------------SEEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCC--------------------
T ss_pred Ccc---------------ccccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCC--------------------
Confidence 433 33556678999999999988777654 367888887654311
Q ss_pred ccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCC
Q 040303 318 CISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHV 397 (552)
Q Consensus 318 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~ 397 (552)
.+ .....+++|+.|+++++.- ...++. .+..+++|+.|++++|. +..+
T Consensus 246 ---~~-~~l~~l~~L~~L~Ls~N~l---~~~~~~-~~~~l~~L~~L~Ls~N~------------------l~~l------ 293 (597)
T 3oja_B 246 ---DT-AWLLNYPGLVEVDLSYNEL---EKIMYH-PFVKMQRLERLYISNNR------------------LVAL------ 293 (597)
T ss_dssp ---CC-GGGGGCTTCSEEECCSSCC---CEEESG-GGTTCSSCCEEECTTSC------------------CCEE------
T ss_pred ---CC-hhhccCCCCCEEECCCCcc---CCCCHH-HhcCccCCCEEECCCCC------------------CCCC------
Confidence 01 2233578999999998764 333322 34578999999999987 1221
Q ss_pred CCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCC
Q 040303 398 NVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECP 475 (552)
Q Consensus 398 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~ 475 (552)
....+.+++|+.|++++|.+..++... +.+++|+.|++++| .+..++ +..+++|+.|++.+++
T Consensus 294 -----~~~~~~l~~L~~L~Ls~N~l~~i~~~~-----~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 294 -----NLYGQPIPTLKVLDLSHNHLLHVERNQ-----PQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -----ECSSSCCTTCCEEECCSSCCCCCGGGH-----HHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred -----CcccccCCCCcEEECCCCCCCccCccc-----ccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 112356899999999999887654332 27899999999996 566664 5678999999999987
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=7.1e-24 Score=216.22 Aligned_cols=304 Identities=16% Similarity=0.088 Sum_probs=190.2
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
..+++++|+++++.+.+ +|.+..+++|++|++++|... .+| ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~~l~~l~~L~~L~Ls~n~l~--~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNIT--TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CTTGGGCTTCSEEECCSSCCS--CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCccc-ChhhcccCCCCEEEccCCcCC--eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 46778888888888877 666567888888888887655 444 477888888888888887765 7788888888
Q ss_pred EccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchh
Q 040303 164 CLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 164 ~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
++++|.+...+ ++++++|++|++++|.++.+| ++++++|++|++++|..++.++ ++.+++|++|+++++..
T Consensus 112 ~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l--- 182 (457)
T 3bz5_A 112 NCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI--- 182 (457)
T ss_dssp ECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC---
T ss_pred ECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc---
Confidence 88888877632 778888888888888887764 7778888888888876566663 57788888888874433
Q ss_pred hhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccch
Q 040303 244 EVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKS 323 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 323 (552)
. .. .++.+++|+.|++++|.+..++ ...+
T Consensus 183 -------~--~l-~l~~l~~L~~L~l~~N~l~~~~-l~~l---------------------------------------- 211 (457)
T 3bz5_A 183 -------T--EL-DVSQNKLLNRLNCDTNNITKLD-LNQN---------------------------------------- 211 (457)
T ss_dssp -------C--CC-CCTTCTTCCEEECCSSCCSCCC-CTTC----------------------------------------
T ss_pred -------c--ee-ccccCCCCCEEECcCCcCCeec-cccC----------------------------------------
Confidence 0 11 2667778888888877766542 1123
Q ss_pred hHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC-CCCCcchhhhhhcccccccceeeeccCCCCCcc
Q 040303 324 GHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ-APSPKESKRCKESTSEMRSNEIILEDHVNVPNT 402 (552)
Q Consensus 324 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~ 402 (552)
++|+.|++.++.-. .++ ...+++|+.|++++|. ..+|. ..+++ ++.+.
T Consensus 212 ------~~L~~L~Ls~N~l~---~ip----~~~l~~L~~L~l~~N~l~~~~~--~~l~~------L~~L~---------- 260 (457)
T 3bz5_A 212 ------IQLTFLDCSSNKLT---EID----VTPLTQLTYFDCSVNPLTELDV--STLSK------LTTLH---------- 260 (457)
T ss_dssp ------TTCSEEECCSSCCS---CCC----CTTCTTCSEEECCSSCCSCCCC--TTCTT------CCEEE----------
T ss_pred ------CCCCEEECcCCccc---ccC----ccccCCCCEEEeeCCcCCCcCH--HHCCC------CCEEe----------
Confidence 44555555544331 111 2345666666666655 11110 00000 01111
Q ss_pred ccccccCCCcccccccce-eeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhh
Q 040303 403 FFLKGGLPNLETLELYNV-NVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEII 481 (552)
Q Consensus 403 ~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~ 481 (552)
....+|+.|++++| .+..++. +.+++|+.|++++|..+..+|. ..++|+.|++.+|++++.+.
T Consensus 261 ----l~~n~L~~L~l~~n~~~~~~~~-------~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 261 ----CIQTDLLEIDLTHNTQLIYFQA-------EGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp ----CTTCCCSCCCCTTCTTCCEEEC-------TTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEE
T ss_pred ----ccCCCCCEEECCCCccCCcccc-------cccccCCEEECCCCcccceecc-----CCCcceEechhhcccCCEEE
Confidence 11235667777777 3333321 1678888999988887777764 23455555555555444431
Q ss_pred cc----ccccccccccCCccEEEeccc
Q 040303 482 VI----DQQERKNVVFPQLQFLKMVDL 504 (552)
Q Consensus 482 ~~----~~~~~~~~~l~~L~~L~l~~c 504 (552)
.. .+. .+..+++|+.|++.+.
T Consensus 325 L~~N~l~~l--~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 325 LNNTELTEL--DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCCSCC--CCTTCTTCSEEECCSS
T ss_pred CCCCccccc--ccccCCcCcEEECCCC
Confidence 10 010 2334666777776664
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=214.89 Aligned_cols=149 Identities=25% Similarity=0.308 Sum_probs=69.4
Q ss_pred cCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCcE
Q 040303 85 LKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLRT 162 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~ 162 (552)
++++++|++++|.+....+..+ .+++|++|++++|... .++...|.++++|++|++++|.+..+|.. ++++++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 3445555555555544222222 4555555555544333 33222334555555555555555444432 344555555
Q ss_pred EEccCCCCCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 163 LCLYCSELQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 163 L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
|++++|.+.. +..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+..+++|+.|++.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEE
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCC
Confidence 5555555443 34445555555555555544433 2234445555555555543 444444334455555555544
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.9e-23 Score=213.25 Aligned_cols=312 Identities=23% Similarity=0.230 Sum_probs=229.4
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 167 (552)
+.++.+++.+.. +|... .+++++|++++|... .++...|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 14 ~~v~c~~~~l~~-ip~~~-~~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI-PTETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSS-CCSCC-CTTCSEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-CCCCC-CCCCcEEECCCCccc--eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 567777777766 66533 368999999998766 66666679999999999999999876 77899999999999999
Q ss_pred CCCCC-h-hhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 168 SELQD-I-AVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 168 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
|.+.. | ..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++.+++|++|++.++..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l---- 164 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNL---- 164 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCC----
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcC----
Confidence 99887 4 4689999999999999988865 5578999999999999987 6666555589999999999985543
Q ss_pred hhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc--cccCCceEEEEecccccCCCCCCcccceeeecCcccccccc
Q 040303 245 VEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL--FFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFK 322 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 322 (552)
.......+..+++|+.|++++|.+..++... .+++|+.|.+..+..... .+
T Consensus 165 ------~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------------~~ 217 (477)
T 2id5_A 165 ------TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT---------------------MT 217 (477)
T ss_dssp ------SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE---------------------EC
T ss_pred ------cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc---------------------cC
Confidence 1223456889999999999999988777643 778888888876431100 01
Q ss_pred hhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCcc
Q 040303 323 SGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNT 402 (552)
Q Consensus 323 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~ 402 (552)
.... ...+|+.|++.++.- ..++. ..+..+++|+.|++++|. +..+.
T Consensus 218 ~~~~-~~~~L~~L~l~~n~l---~~~~~-~~~~~l~~L~~L~Ls~n~------------------l~~~~---------- 264 (477)
T 2id5_A 218 PNCL-YGLNLTSLSITHCNL---TAVPY-LAVRHLVYLRFLNLSYNP------------------ISTIE---------- 264 (477)
T ss_dssp TTTT-TTCCCSEEEEESSCC---CSCCH-HHHTTCTTCCEEECCSSC------------------CCEEC----------
T ss_pred cccc-cCccccEEECcCCcc---cccCH-HHhcCccccCeeECCCCc------------------CCccC----------
Confidence 1111 124788888877654 22221 123467888888888876 11111
Q ss_pred ccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCC
Q 040303 403 FFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECP 475 (552)
Q Consensus 403 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~ 475 (552)
......+++|+.|++.++.+..+...... .+++|+.|+++++ .++.+++ ..+..+++|++|++.+++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFR----GLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSEECTTTBT----TCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred hhhccccccCCEEECCCCccceECHHHhc----CcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 01224678888888888877766443333 7788899988885 7777766 346778888888888775
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=2.4e-23 Score=219.30 Aligned_cols=376 Identities=14% Similarity=0.056 Sum_probs=229.4
Q ss_pred cccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc--chhcCCCC
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP--SSLGLLTN 159 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~l~~ 159 (552)
...+++++|++++|.+....+..+ .+++|++|++++|... .+|.. .+++|++|++++|.+..+| ..++++++
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC--EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC--ccCcc---ccccCCEEECCCCCccccCchHhhcccCc
Confidence 457889999999999988556555 8999999999999876 78875 7999999999999998754 78999999
Q ss_pred CcEEEccCCCCCC--hhhhcCCCCccEEEecCCcC--c-ccchhhcc--------------------------CCCCCEE
Q 040303 160 LRTLCLYCSELQD--IAVIGELKNLEILCLRGSYI--E-QLPVEIGQ--------------------------LTRLRSL 208 (552)
Q Consensus 160 L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l--~-~lp~~i~~--------------------------l~~L~~L 208 (552)
|++|++++|.+.. ...+.++ +|++|++++|.+ . ..|..+.. +++|+.|
T Consensus 148 L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 226 (562)
T 3a79_B 148 LTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226 (562)
T ss_dssp CCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred ccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence 9999999999876 3444444 459999999977 3 33444433 4567777
Q ss_pred eccCCC----CCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC-cCCCcc--
Q 040303 209 DLRDCD----RLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN-TLPKGL-- 281 (552)
Q Consensus 209 ~l~~~~----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~~-- 281 (552)
++++|. .+...... +..+++|+.|++.+....... .. .........+|++|++++|.+. .+|..+
T Consensus 227 ~l~~n~~~~~~l~~~~~~-l~~l~~L~~L~L~~~~l~~~~------~~-~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 227 NIKLNDENCQRLMTFLSE-LTRGPTLLNVTLQHIETTWKC------SV-KLFQFFWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp EEECCSTTHHHHHHHHHH-HHSCSSCEEEEEEEEEECHHH------HH-HHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred cccccccccchHHHHHHH-HhccCcceEEEecCCcCcHHH------HH-HHHHhhhcccccEEEEeccEeeccccchhhh
Confidence 777653 11112223 577888888887633221000 00 0111223347888888877744 666654
Q ss_pred -cccCCceEEEEecccccCCCCC--------CcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccc
Q 040303 282 -FFEKLERYRICIGRWCWEDTSP--------TCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNK 352 (552)
Q Consensus 282 -~l~~L~~L~l~~~~~~~~~~~~--------~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 352 (552)
...+|+.|.+........ ..+ ...+...+.+..+.-.... ....+++|+.|++.++.-.. ..+.
T Consensus 299 ~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~--~~~~-- 371 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTD--SVFQ-- 371 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT--TTTT--
T ss_pred cccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcccc--chhh--
Confidence 124455544433221000 000 0011122222211111110 00235677777777655311 1111
Q ss_pred cCcccccccEEEeecCC-CCCC---cchhhhhhc----ccccccce-eeeccCCCCCccccccccCCCcccccccceeee
Q 040303 353 LGSYSSQLKHLWVEGCQ-APSP---KESKRCKES----TSEMRSNE-IILEDHVNVPNTFFLKGGLPNLETLELYNVNVE 423 (552)
Q Consensus 353 ~~~~~~~L~~L~l~~c~-~~lp---~~~~~~~~L----i~~c~l~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 423 (552)
....+++|+.|++++|. ..+| ..+..+++| ++.+.+.. +. ......+++|+.|++++|.+.
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY----------DRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS----------SCCCCCCTTCCEEECCSSCCC
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC----------hhhhcCcccCCEEECCCCCCC
Confidence 23456777777777776 2222 222333333 22222222 11 012346789999999999765
Q ss_pred EeccCCCCcccccc-CcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEec
Q 040303 424 RIWKSQLPAMSCGI-QTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMV 502 (552)
Q Consensus 424 ~~~~~~~~~~~~~l-~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 502 (552)
..... .+ ++|+.|+++++ +++.+|.. +..+++|++|++.++. ++.++. + ....+++|+.|++.
T Consensus 442 ~~~~~-------~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N~-l~~l~~--~---~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 442 GSVFR-------CLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASNQ-LKSVPD--G---VFDRLTSLQYIWLH 505 (562)
T ss_dssp GGGGS-------SCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSSC-CCCCCT--T---STTTCTTCCCEECC
T ss_pred cchhh-------hhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCCC-CCCCCH--H---HHhcCCCCCEEEec
Confidence 32111 33 69999999986 88888873 5589999999999974 666532 1 13458999999999
Q ss_pred ccc
Q 040303 503 DLE 505 (552)
Q Consensus 503 ~c~ 505 (552)
+++
T Consensus 506 ~N~ 508 (562)
T 3a79_B 506 DNP 508 (562)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.5e-22 Score=216.79 Aligned_cols=144 Identities=24% Similarity=0.293 Sum_probs=118.9
Q ss_pred EEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCC
Q 040303 90 SIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCS 168 (552)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~ 168 (552)
+.+-++..+.. +|... -+.+++|++++|.+. .+|+..|.++++|++|+|++|.++.+|+ .++++++|++|+|++|
T Consensus 35 ~~~c~~~~l~~-vP~~l-p~~~~~LdLs~N~i~--~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYK-IPDNL-PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSS-CCSSS-CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCc-cCCCC-CcCCCEEEeeCCCCC--CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 34444445555 66432 147999999999876 7888778999999999999999998865 5899999999999999
Q ss_pred CCCC-h-hhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCc--cCcccccCCCCCcEEEccccc
Q 040303 169 ELQD-I-AVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQV--IPPNVLSNLSHLEELYIRSFN 239 (552)
Q Consensus 169 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~ 239 (552)
.++. | ..|.++.+|++|++++|+++.+|.. ++++++|++|++++|. +.. .|.. ++.+++|++|+++++.
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcc
Confidence 9987 4 6789999999999999999998875 8999999999999987 443 3444 7899999999998543
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.6e-22 Score=207.37 Aligned_cols=366 Identities=17% Similarity=0.185 Sum_probs=242.0
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccc-cc-cchhcCCCCCcEEEcc
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLS-LL-PSSLGLLTNLRTLCLY 166 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~ 166 (552)
+.++..++.+.. +|. -.++|++|++++|... .++...|.++++|++|++++|.+. .+ |..++++++|++|+++
T Consensus 13 ~~~~c~~~~l~~-lp~--l~~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE--LPAHVNYVDLSLNSIA--ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSS-CCC--CCTTCCEEECCSSCCC--EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCccc-CCC--CCCccCEEEecCCccC--cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 445666666666 666 3378999999988765 554455688999999999999775 44 4568889999999999
Q ss_pred CCCCCC--hhhhcCCCCccEEEecCCcCcc-cchh--hccCCCCCEEeccCCCCCCcc-CcccccCCCCCcEEEcccccc
Q 040303 167 CSELQD--IAVIGELKNLEILCLRGSYIEQ-LPVE--IGQLTRLRSLDLRDCDRLQVI-PPNVLSNLSHLEELYIRSFNK 240 (552)
Q Consensus 167 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 240 (552)
+|.+.. |..++++++|++|++++|.++. .|.. +.++++|++|++++|. +..+ |...++++++|++|+++++..
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcc
Confidence 998776 6788999999999999998874 4444 8888999999999887 4444 554468889999998875433
Q ss_pred chhhhhhhcccccChhhhcCC--CCCcEEEccCCCCCcCCCcc-cccCCceEEEEecccccCCCCCCcccceeeecCccc
Q 040303 241 WEVEVEAAGVKNASLEELKRL--PNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDN 317 (552)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~ 317 (552)
.......+..+ .+|+.|+++.+.+..++... ...
T Consensus 167 ----------~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~--------------------------------- 203 (455)
T 3v47_A 167 ----------KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE--------------------------------- 203 (455)
T ss_dssp ----------SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH---------------------------------
T ss_pred ----------cccChhhhhccccccccccccccCcccccchhhcccc---------------------------------
Confidence 11122333333 57788888877766554321 000
Q ss_pred ccccchhHHHHhchheeeeecCCCCCcceeeeccc-cCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccC
Q 040303 318 CISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNK-LGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDH 396 (552)
Q Consensus 318 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~ 396 (552)
.......+++|+.|+++++.- ....+..+ .....++|+.|++++|....... ....+...
T Consensus 204 ----~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~----- 264 (455)
T 3v47_A 204 ----KCGNPFKNTSITTLDLSGNGF--KESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------GHTNFKDP----- 264 (455)
T ss_dssp ----HHCCTTTTCEEEEEECTTSCC--CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------TCCSSCCC-----
T ss_pred ----ccccccccceeeeEecCCCcc--cccchhhhhccccccceeeEeecccccccccc--------chhhhccC-----
Confidence 000001236788888887654 11111111 01123789999999886110000 00000000
Q ss_pred CCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCc
Q 040303 397 VNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPI 476 (552)
Q Consensus 397 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~ 476 (552)
..........++|+.|+++++.+..+...... .+++|++|++.+| .+..+++ ..+..+++|++|++.+|.
T Consensus 265 ---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 265 ---DNFTFKGLEASGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp ---CTTTTGGGTTSCCCEEECCSSCCCEECTTTTT----TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-
T ss_pred ---cccccccccccCceEEEecCccccccchhhcc----cCCCCCEEECCCC-cccccCh-hHhcCcccCCEEECCCCc-
Confidence 00111112357999999999988776544443 7899999999986 5666654 257889999999999985
Q ss_pred hhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecCCCcchhhccc
Q 040303 477 LEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRCPEFLLTAHDL 540 (552)
Q Consensus 477 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~ 540 (552)
++.+.. . ....+++|++|++.++ .++.+....+. .+++|++|+++++ +++.+|.+.
T Consensus 335 l~~~~~-~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~ 390 (455)
T 3v47_A 335 LGSIDS-R----MFENLDKLEVLDLSYN-HIRALGDQSFL-GLPNLKELALDTN-QLKSVPDGI 390 (455)
T ss_dssp CCEECG-G----GGTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCSCCCTTT
T ss_pred cCCcCh-h----HhcCcccCCEEECCCC-cccccChhhcc-ccccccEEECCCC-ccccCCHhH
Confidence 444421 1 2345899999999998 56666544443 7899999999996 577776543
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.5e-23 Score=213.68 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=51.3
Q ss_pred CcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCC-------------ccEEEeecccccccc
Q 040303 86 KFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQ-------------VRVLDLTYMHLSLLP 151 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~-------------Lr~L~l~~~~~~~lp 151 (552)
..+++++++++.+.. +|..+ .+++|++|++++|.... .+|.++ +++++ +++|+++++.++.+|
T Consensus 11 ~~L~~L~l~~n~l~~-iP~~i~~L~~L~~L~l~~n~~~~-~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWER-NAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHH-TSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccCchhh-CChhHhcccchhhhhccCCcccc-cCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 445566666665533 55333 55666666655544322 344433 33333 255555555555444
Q ss_pred chhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCC
Q 040303 152 SSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHL 230 (552)
Q Consensus 152 ~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 230 (552)
.. .++|++|++++|.++. |.. +.+|++|++++|.++.+|.. .++|++|++++|. +..+| + ++++++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCC
Confidence 41 2445555555555444 221 24444455544444443321 1344455544443 33344 2 4444455
Q ss_pred cEEEcc
Q 040303 231 EELYIR 236 (552)
Q Consensus 231 ~~L~l~ 236 (552)
++|+++
T Consensus 156 ~~L~l~ 161 (454)
T 1jl5_A 156 KIIDVD 161 (454)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 555444
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.1e-22 Score=207.30 Aligned_cols=298 Identities=17% Similarity=0.132 Sum_probs=216.1
Q ss_pred cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEE
Q 040303 106 LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEIL 185 (552)
Q Consensus 106 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L 185 (552)
..+++|++|+++++... .+| + +..+++|++|++++|.++.+| ++.+++|++|++++|.+...+ ++++++|++|
T Consensus 39 ~~l~~L~~L~Ls~n~l~--~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L 111 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSIT--DMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYL 111 (457)
T ss_dssp HHHTTCCEEECCSSCCC--CCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEE
T ss_pred hHcCCCCEEEccCCCcc--cCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEE
Confidence 36889999999998765 566 3 588999999999999998886 889999999999999988843 8899999999
Q ss_pred EecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCc
Q 040303 186 CLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLT 265 (552)
Q Consensus 186 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 265 (552)
++++|.++.+| ++++++|++|++++|. +..++ ++.+++|++|+++++... . . ..++.+++|+
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~----------~-~-~~~~~l~~L~ 173 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI----------T-K-LDVTPQTQLT 173 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC----------C-C-CCCTTCTTCC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc----------c-c-cccccCCcCC
Confidence 99999999886 8899999999999987 66664 688999999999855321 0 1 1477889999
Q ss_pred EEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcc
Q 040303 266 TLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDI 345 (552)
Q Consensus 266 ~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 345 (552)
.|++++|.+..+| ... +++|+.|++.++.-..+
T Consensus 174 ~L~ls~n~l~~l~-l~~----------------------------------------------l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 174 TLDCSFNKITELD-VSQ----------------------------------------------NKLLNRLNCDTNNITKL 206 (457)
T ss_dssp EEECCSSCCCCCC-CTT----------------------------------------------CTTCCEEECCSSCCSCC
T ss_pred EEECCCCccceec-ccc----------------------------------------------CCCCCEEECcCCcCCee
Confidence 9999998877654 112 35666666666543222
Q ss_pred eeeeccccCcccccccEEEeecCC-CCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceeeeE
Q 040303 346 IELVNNKLGSYSSQLKHLWVEGCQ-APSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVER 424 (552)
Q Consensus 346 ~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 424 (552)
....+++|+.|++++|. ..+| .+.+++|+.|+++++.+..
T Consensus 207 -------~l~~l~~L~~L~Ls~N~l~~ip--------------------------------~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 207 -------DLNQNIQLTFLDCSSNKLTEID--------------------------------VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp -------CCTTCTTCSEEECCSSCCSCCC--------------------------------CTTCTTCSEEECCSSCCSC
T ss_pred -------ccccCCCCCEEECcCCcccccC--------------------------------ccccCCCCEEEeeCCcCCC
Confidence 13578999999999987 1111 2568899999999997766
Q ss_pred eccCCCCccccccCcc----------eEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccc-cccc-cccc
Q 040303 425 IWKSQLPAMSCGIQTL----------TRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVID-QQER-KNVV 492 (552)
Q Consensus 425 ~~~~~~~~~~~~l~~L----------~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~~~-~~~~ 492 (552)
++.. .+++| +.|++.+|..+..+| .+.+++|+.|++.+|..+..++... .... .+..
T Consensus 248 ~~~~-------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 248 LDVS-------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp CCCT-------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred cCHH-------HCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 5422 34444 455566666565564 3578999999999998777663210 0000 2233
Q ss_pred cCCccEEEeccccccccccCCcccccCCCccEEEeecC
Q 040303 493 FPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRC 530 (552)
Q Consensus 493 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C 530 (552)
.++|+.|++.++ +++.++ + ..+++|+.|++++.
T Consensus 317 ~~~L~~L~L~~N-~l~~l~---l-~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 317 NPKLVYLYLNNT-ELTELD---V-SHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCEEECTTC-CCSCCC---C-TTCTTCSEEECCSS
T ss_pred cccCCEEECCCC-cccccc---c-ccCCcCcEEECCCC
Confidence 566666666665 455542 2 26788999988654
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.2e-21 Score=191.80 Aligned_cols=156 Identities=17% Similarity=0.307 Sum_probs=106.1
Q ss_pred CceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEE
Q 040303 110 QLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILC 186 (552)
Q Consensus 110 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~ 186 (552)
++++++++++... .+|..+ .+.|++|++++|.++.++. .++++++|++|++++|.+.. |..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc--ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 5666666655433 555533 3567777777777776655 57777788888887777665 56777788888888
Q ss_pred ecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcE
Q 040303 187 LRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTT 266 (552)
Q Consensus 187 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 266 (552)
+++|.++.+|..+. ++|++|++++|. +..++...++++++|++|+++++.... .......+..+++|+.
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS--------SGIENGAFQGMKKLSY 175 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG--------GGBCTTGGGGCTTCCE
T ss_pred CCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc--------cCcChhhccCCCCcCE
Confidence 88877777776654 678888887776 566666556778888888877443210 1123456777888888
Q ss_pred EEccCCCCCcCCCcc
Q 040303 267 LELCIPDVNTLPKGL 281 (552)
Q Consensus 267 L~l~~~~~~~~p~~~ 281 (552)
|++++|.+..+|..+
T Consensus 176 L~l~~n~l~~l~~~~ 190 (330)
T 1xku_A 176 IRIADTNITTIPQGL 190 (330)
T ss_dssp EECCSSCCCSCCSSC
T ss_pred EECCCCccccCCccc
Confidence 888888777666543
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=5.6e-22 Score=194.34 Aligned_cols=164 Identities=18% Similarity=0.285 Sum_probs=105.5
Q ss_pred CceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEE
Q 040303 110 QLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILC 186 (552)
Q Consensus 110 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~ 186 (552)
+++.++++++... .+|..+ .++|++|++++|.+..++ ..++++++|++|++++|.+.. |..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc--ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 4666666665443 566543 356777777777776653 467777777777777777665 56677777777777
Q ss_pred ecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcE
Q 040303 187 LRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTT 266 (552)
Q Consensus 187 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 266 (552)
+++|.++.+|..+. ++|++|++++|. +..++...++.+++|++|+++++.... .......+..+ +|+.
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN--------SGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG--------GGSCTTSSCSC-CCSC
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc--------CCCCcccccCC-ccCE
Confidence 77777777776655 677777777766 566666556777777777776443310 01133445555 7777
Q ss_pred EEccCCCCCcCCCcccccCCceEEE
Q 040303 267 LELCIPDVNTLPKGLFFEKLERYRI 291 (552)
Q Consensus 267 L~l~~~~~~~~p~~~~l~~L~~L~l 291 (552)
|++++|.+..+|..+. ++|+.|.+
T Consensus 177 L~l~~n~l~~l~~~~~-~~L~~L~l 200 (332)
T 2ft3_A 177 LRISEAKLTGIPKDLP-ETLNELHL 200 (332)
T ss_dssp CBCCSSBCSSCCSSSC-SSCSCCBC
T ss_pred EECcCCCCCccCcccc-CCCCEEEC
Confidence 7787777776665442 34444443
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=4.5e-22 Score=202.76 Aligned_cols=362 Identities=15% Similarity=0.062 Sum_probs=196.3
Q ss_pred CCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccc-cccchhcCCCCC-------------cEEEccCC
Q 040303 103 PEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLS-LLPSSLGLLTNL-------------RTLCLYCS 168 (552)
Q Consensus 103 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L-------------~~L~l~~~ 168 (552)
|...+...|++|.++++... .+|.++ +++++|++|++++|.+. .+|.+++++.+| ++|++++|
T Consensus 5 p~~~~~~~L~~L~l~~n~l~--~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLT--EMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccccccchhhhcccCchh--hCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 34456789999999998773 899886 99999999999999876 799999998875 99999999
Q ss_pred CCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhh
Q 040303 169 ELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEA 247 (552)
Q Consensus 169 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 247 (552)
.++. |. + .++|++|++++|.++.+|.. +++|++|++++|. +..++.. .++|++|+++++..
T Consensus 82 ~l~~lp~-~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l------- 143 (454)
T 1jl5_A 82 GLSSLPE-L--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQL------- 143 (454)
T ss_dssp CCSCCCS-C--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCC-------
T ss_pred ccccCCC-C--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCC-------
Confidence 9887 44 2 47999999999999998854 4889999999986 6666642 27999999985543
Q ss_pred hcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHH
Q 040303 248 AGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIV 327 (552)
Q Consensus 248 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 327 (552)
. .+.+++.+++|+.|++++|.+..+|... .+|+.|.+..+................+.+..+.....+.
T Consensus 144 ---~--~lp~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~---- 212 (454)
T 1jl5_A 144 ---E--KLPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD---- 212 (454)
T ss_dssp ---S--SCCCCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC----
T ss_pred ---C--CCcccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCC----
Confidence 1 1225889999999999999988887654 5888888877664333222233333444444332222221
Q ss_pred HhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC-CCCCcchhhhhhc-ccccccceee----------ecc
Q 040303 328 QLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ-APSPKESKRCKES-TSEMRSNEII----------LED 395 (552)
Q Consensus 328 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~lp~~~~~~~~L-i~~c~l~~l~----------~~~ 395 (552)
..++|+.|++.++.- ..++. ...+++|++|++++|. ..+|....++..| +..+.+..+. ...
T Consensus 213 ~~~~L~~L~l~~n~l---~~lp~---~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 213 LPLSLESIVAGNNIL---EELPE---LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp CCTTCCEEECCSSCC---SSCCC---CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred CcCcccEEECcCCcC---Ccccc---cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEECcC
Confidence 124778888877654 23331 3467888888888876 3444433333333 3333322211 100
Q ss_pred CCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCC
Q 040303 396 HVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECP 475 (552)
Q Consensus 396 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~ 475 (552)
. ....+. ...++|+.|+++++.+..+.. ..++|++|+++++ ++..+|. .+++|++|++.+|.
T Consensus 287 N-~l~~l~---~~~~~L~~L~l~~N~l~~i~~--------~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 287 N-IFSGLS---ELPPNLYYLNASSNEIRSLCD--------LPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFNH 348 (454)
T ss_dssp S-CCSEES---CCCTTCCEEECCSSCCSEECC--------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred C-ccCccc---CcCCcCCEEECcCCcCCcccC--------CcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCCc
Confidence 0 000000 112345555555554443211 1246777777763 5666654 25777777777763
Q ss_pred chhhhhccccccccccccCCccEEEecccccccc---ccCCcc-----------cccCCCccEEEeecCC
Q 040303 476 ILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTS---FCTGDV-----------HIEFPTLETLEVIRCP 531 (552)
Q Consensus 476 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~---~~~~~~-----------~~~~~~L~~L~i~~C~ 531 (552)
++.++. .+++|++|++.+++ ++. +|.... +..+++|+.|++++++
T Consensus 349 -l~~lp~---------~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 349 -LAEVPE---------LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp -CSCCCC---------CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC---------------------
T ss_pred -cccccc---------hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 544421 26778888887764 333 332210 0112677777777764
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=7.7e-22 Score=192.51 Aligned_cols=90 Identities=26% Similarity=0.418 Sum_probs=76.5
Q ss_pred CCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEecc
Q 040303 133 KLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLR 211 (552)
Q Consensus 133 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (552)
...++++|+++++.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4577888888888888888888888888888888888777 777888888999999888888888888889999999998
Q ss_pred CCCCCCccCcc
Q 040303 212 DCDRLQVIPPN 222 (552)
Q Consensus 212 ~~~~~~~~~~~ 222 (552)
+|...+.+|..
T Consensus 159 ~n~~~~~~p~~ 169 (328)
T 4fcg_A 159 ACPELTELPEP 169 (328)
T ss_dssp EETTCCCCCSC
T ss_pred CCCCccccChh
Confidence 88777777765
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=5.7e-21 Score=186.34 Aligned_cols=180 Identities=25% Similarity=0.326 Sum_probs=141.8
Q ss_pred cCcccEEEeecCCCcccCCC-ccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 85 LKFYTSIVLHDSKMNVLLPE-VLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
..+++.|+++++.+.. +|. ...+++|++|++++|... .+|..+ .++++|++|++++|.+..+|..++++++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~--~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM--ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC--CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc--chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 4678889999988886 665 447889999999988766 677765 78899999999999888888889999999999
Q ss_pred EccCCCCC-C-hhhhcC---------CCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcE
Q 040303 164 CLYCSELQ-D-IAVIGE---------LKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEE 232 (552)
Q Consensus 164 ~l~~~~~~-~-~~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 232 (552)
++++|.+. . |..++. +++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++.+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCE
Confidence 99987743 3 665554 889999999999888888888899999999998887 6678776 788899999
Q ss_pred EEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCC-CCcCCCc
Q 040303 233 LYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPD-VNTLPKG 280 (552)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~~ 280 (552)
|+++++.. ....+..++.+++|+.|++++|. .+.+|..
T Consensus 234 L~Ls~n~~----------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 234 LDLRGCTA----------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp EECTTCTT----------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred EECcCCcc----------hhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 98875443 22345567888888888888765 4444443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.4e-20 Score=184.38 Aligned_cols=291 Identities=17% Similarity=0.143 Sum_probs=203.3
Q ss_pred CCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEecc
Q 040303 135 TQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLR 211 (552)
Q Consensus 135 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~ 211 (552)
.++++++++++.++.+|..+. .+|++|++++|.+.. +..+.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999998774 799999999999887 56899999999999999999876 6789999999999999
Q ss_pred CCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcC---CCcccccCCce
Q 040303 212 DCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTL---PKGLFFEKLER 288 (552)
Q Consensus 212 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---p~~~~l~~L~~ 288 (552)
+|. +..+|.. +. ++|++|+++++.. .......+..+++|+.|++++|.+... +..+.
T Consensus 111 ~n~-l~~l~~~-~~--~~L~~L~l~~n~i----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------ 170 (332)
T 2ft3_A 111 KNH-LVEIPPN-LP--SSLVELRIHDNRI----------RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD------ 170 (332)
T ss_dssp SSC-CCSCCSS-CC--TTCCEEECCSSCC----------CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC------
T ss_pred CCc-CCccCcc-cc--ccCCEEECCCCcc----------CccCHhHhCCCccCCEEECCCCccccCCCCccccc------
Confidence 987 7788876 33 8999999985543 112334578899999999998876531 11110
Q ss_pred EEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecC
Q 040303 289 YRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGC 368 (552)
Q Consensus 289 L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 368 (552)
.+ +|+.|++.++.- ..++.. .+++|++|+++++
T Consensus 171 ---------------------------------------~l-~L~~L~l~~n~l---~~l~~~----~~~~L~~L~l~~n 203 (332)
T 2ft3_A 171 ---------------------------------------GL-KLNYLRISEAKL---TGIPKD----LPETLNELHLDHN 203 (332)
T ss_dssp ---------------------------------------SC-CCSCCBCCSSBC---SSCCSS----SCSSCSCCBCCSS
T ss_pred ---------------------------------------CC-ccCEEECcCCCC---CccCcc----ccCCCCEEECCCC
Confidence 11 455555555443 222221 2368888888887
Q ss_pred CCCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecC
Q 040303 369 QAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGC 448 (552)
Q Consensus 369 ~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C 448 (552)
. +..+. ......+++|+.|+++++.+..+...... .+++|++|++.+|
T Consensus 204 ~------------------i~~~~----------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N 251 (332)
T 2ft3_A 204 K------------------IQAIE----------LEDLLRYSKLYRLGLGHNQIRMIENGSLS----FLPTLRELHLDNN 251 (332)
T ss_dssp C------------------CCCCC----------TTSSTTCTTCSCCBCCSSCCCCCCTTGGG----GCTTCCEEECCSS
T ss_pred c------------------CCccC----------HHHhcCCCCCCEEECCCCcCCcCChhHhh----CCCCCCEEECCCC
Confidence 6 11110 01235678999999999977765443332 7899999999986
Q ss_pred CCccccccchhHhhhcccceEEEecCCchhhhhccccccc-cccccCCccEEEeccccccc-cccCCcccccCCCccEEE
Q 040303 449 GELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQER-KNVVFPQLQFLKMVDLEKLT-SFCTGDVHIEFPTLETLE 526 (552)
Q Consensus 449 ~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~L~-~~~~~~~~~~~~~L~~L~ 526 (552)
+++.+|. .+..+++|++|++.++. ++.+....-... ....+++|+.|++.+++-.. .+....+ ..+++|+.++
T Consensus 252 -~l~~lp~--~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~-~~l~~L~~l~ 326 (332)
T 2ft3_A 252 -KLSRVPA--GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDRLAIQ 326 (332)
T ss_dssp -CCCBCCT--TGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG-TTBCCSTTEE
T ss_pred -cCeecCh--hhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccc-cccchhhhhh
Confidence 7788876 47889999999999875 555522110000 11126789999999987432 3333333 3678899999
Q ss_pred eecCC
Q 040303 527 VIRCP 531 (552)
Q Consensus 527 i~~C~ 531 (552)
+.++.
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 88875
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.6e-21 Score=187.66 Aligned_cols=243 Identities=18% Similarity=0.157 Sum_probs=184.6
Q ss_pred CcccEEEeecCCCcc--cCCCcc-CCCCceEEEeec-CCCCCcccChhHhhCCCCccEEEeeccccc-cccchhcCCCCC
Q 040303 86 KFYTSIVLHDSKMNV--LLPEVL-ECPQLQLLSLWT-EKSSLITLPDNFFRKLTQVRVLDLTYMHLS-LLPSSLGLLTNL 160 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~--~~~~~~-~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L 160 (552)
.++++|+++++.+.+ .+|..+ .+++|++|++++ +.... .+|..+ .++++|++|++++|.+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 579999999999986 566555 899999999995 65543 667665 89999999999999997 789999999999
Q ss_pred cEEEccCCCCCC--hhhhcCCCCccEEEecCCcCc-ccchhhccCC-CCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 161 RTLCLYCSELQD--IAVIGELKNLEILCLRGSYIE-QLPVEIGQLT-RLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 161 ~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
++|++++|.+.. |..+.++++|++|++++|.+. .+|..+++++ +|++|++++|...+.+|.. ++.++ |+.|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 999999999874 789999999999999999998 8999999998 9999999998854566766 78887 9999998
Q ss_pred ccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccCCceEEEEecccccCCCCCCcccceeeecCc
Q 040303 237 SFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGT 315 (552)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~ 315 (552)
++.. .......+..+++|+.|++++|.+...+..+ .+++|+.|.++.+....
T Consensus 206 ~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~----------------- 258 (313)
T 1ogq_A 206 RNML----------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG----------------- 258 (313)
T ss_dssp SSEE----------EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-----------------
T ss_pred CCcc----------cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC-----------------
Confidence 5543 1235567889999999999999865443333 66777777765443110
Q ss_pred ccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC
Q 040303 316 DNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
........+++|+.|++.++.- ....+.. ..+++|+.|++.+++
T Consensus 259 -----~~p~~l~~l~~L~~L~Ls~N~l---~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 259 -----TLPQGLTQLKFLHSLNVSFNNL---CGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp -----CCCGGGGGCTTCCEEECCSSEE---EEECCCS--TTGGGSCGGGTCSSS
T ss_pred -----cCChHHhcCcCCCEEECcCCcc---cccCCCC--ccccccChHHhcCCC
Confidence 1111223457777777776653 3222221 567777777777765
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=3.7e-20 Score=181.24 Aligned_cols=295 Identities=15% Similarity=0.153 Sum_probs=203.9
Q ss_pred CCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEec
Q 040303 134 LTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDL 210 (552)
Q Consensus 134 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l 210 (552)
..++++++++++.+..+|..+. .+|++|++++|.+.. +..++++++|++|++++|.+..+ |..++++++|++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3478999999999999998764 699999999999887 45799999999999999999877 778999999999999
Q ss_pred cCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEE
Q 040303 211 RDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYR 290 (552)
Q Consensus 211 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~ 290 (552)
++|. +..+|.. +. ++|++|+++++.. .......+..+++|+.|++++|.+...+..
T Consensus 108 s~n~-l~~l~~~-~~--~~L~~L~l~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------- 163 (330)
T 1xku_A 108 SKNQ-LKELPEK-MP--KTLQELRVHENEI----------TKVRKSVFNGLNQMIVVELGTNPLKSSGIE---------- 163 (330)
T ss_dssp CSSC-CSBCCSS-CC--TTCCEEECCSSCC----------CBBCHHHHTTCTTCCEEECCSSCCCGGGBC----------
T ss_pred CCCc-CCccChh-hc--ccccEEECCCCcc----------cccCHhHhcCCccccEEECCCCcCCccCcC----------
Confidence 9987 7788876 33 7999999985543 122445688999999999998876431100
Q ss_pred EEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCC
Q 040303 291 ICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQA 370 (552)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (552)
......+++|+.|++.++.- ..++. ..+++|++|++++|.
T Consensus 164 --------------------------------~~~~~~l~~L~~L~l~~n~l---~~l~~----~~~~~L~~L~l~~n~- 203 (330)
T 1xku_A 164 --------------------------------NGAFQGMKKLSYIRIADTNI---TTIPQ----GLPPSLTELHLDGNK- 203 (330)
T ss_dssp --------------------------------TTGGGGCTTCCEEECCSSCC---CSCCS----SCCTTCSEEECTTSC-
T ss_pred --------------------------------hhhccCCCCcCEEECCCCcc---ccCCc----cccccCCEEECCCCc-
Confidence 00111346667777766543 22222 123788888888876
Q ss_pred CCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCC
Q 040303 371 PSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGE 450 (552)
Q Consensus 371 ~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~ 450 (552)
+..+. ......+++|+.|+++++.+..+...... .+++|++|++++| .
T Consensus 204 -----------------l~~~~----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N-~ 251 (330)
T 1xku_A 204 -----------------ITKVD----------AASLKGLNNLAKLGLSFNSISAVDNGSLA----NTPHLRELHLNNN-K 251 (330)
T ss_dssp -----------------CCEEC----------TGGGTTCTTCCEEECCSSCCCEECTTTGG----GSTTCCEEECCSS-C
T ss_pred -----------------CCccC----------HHHhcCCCCCCEEECCCCcCceeChhhcc----CCCCCCEEECCCC-c
Confidence 11111 11235678899999998877776543333 7789999999886 6
Q ss_pred ccccccchhHhhhcccceEEEecCCchhhhhcccccc-ccccccCCccEEEeccccccc-cccCCcccccCCCccEEEee
Q 040303 451 LRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQE-RKNVVFPQLQFLKMVDLEKLT-SFCTGDVHIEFPTLETLEVI 528 (552)
Q Consensus 451 L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~L~-~~~~~~~~~~~~~L~~L~i~ 528 (552)
+..+|. .+..+++|++|++.+|. ++.+....... ......++|+.|++.+.|--. .++...+ ..+++|+.++++
T Consensus 252 l~~lp~--~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f-~~~~~l~~l~L~ 327 (330)
T 1xku_A 252 LVKVPG--GLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLG 327 (330)
T ss_dssp CSSCCT--TTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG-TTCCCGGGEEC-
T ss_pred CccCCh--hhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCcccc-ccccceeEEEec
Confidence 778876 47788999999999875 55542211100 011235788899999887321 2333333 256778888877
Q ss_pred cC
Q 040303 529 RC 530 (552)
Q Consensus 529 ~C 530 (552)
++
T Consensus 328 ~N 329 (330)
T 1xku_A 328 NY 329 (330)
T ss_dssp --
T ss_pred cc
Confidence 64
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.1e-20 Score=183.32 Aligned_cols=154 Identities=17% Similarity=0.208 Sum_probs=123.6
Q ss_pred CCceEEEeecCCCCCc-ccChhHhhCCCCccEEEeec-cccc-cccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCcc
Q 040303 109 PQLQLLSLWTEKSSLI-TLPDNFFRKLTQVRVLDLTY-MHLS-LLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLE 183 (552)
Q Consensus 109 ~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~ 183 (552)
.+++.|+++++..... .+|..+ .++++|++|++++ +.+. .+|..++++++|++|++++|.+.. |..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 6899999999876521 466654 8899999999995 7665 689999999999999999999874 78899999999
Q ss_pred EEEecCCcCc-ccchhhccCCCCCEEeccCCCCCCccCcccccCCC-CCcEEEccccccchhhhhhhcccccChhhhcCC
Q 040303 184 ILCLRGSYIE-QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLS-HLEELYIRSFNKWEVEVEAAGVKNASLEELKRL 261 (552)
Q Consensus 184 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 261 (552)
+|++++|.+. .+|..+.++++|++|++++|...+.+|.. ++.++ +|++|+++++.. ....+..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l----------~~~~~~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL----------TGKIPPTFANL 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE----------EEECCGGGGGC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee----------eccCChHHhCC
Confidence 9999999888 78889999999999999998844477776 78887 899999875433 12244556666
Q ss_pred CCCcEEEccCCCCC
Q 040303 262 PNLTTLELCIPDVN 275 (552)
Q Consensus 262 ~~L~~L~l~~~~~~ 275 (552)
+ |+.|++++|.+.
T Consensus 198 ~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 198 N-LAFVDLSRNMLE 210 (313)
T ss_dssp C-CSEEECCSSEEE
T ss_pred c-ccEEECcCCccc
Confidence 6 888888877644
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=184.84 Aligned_cols=172 Identities=22% Similarity=0.257 Sum_probs=103.7
Q ss_pred EEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCCcEEEccCC
Q 040303 90 SIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLRTLCLYCS 168 (552)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~ 168 (552)
..+.+++.+.. +|... .++|++|++++|... .++...|.++++|++|++++|.++.++ ..++++++|++|++++|
T Consensus 35 ~c~~~~~~l~~-iP~~~-~~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNS-IPSGL-TEAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSS-CCTTC-CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCccc-ccccc-cccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 35555566555 55422 246777777766544 455544566777777777777666553 45667777777777777
Q ss_pred CCCC-h-hhhcCCCCccEEEecCCcCcccch--hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 169 ELQD-I-AVIGELKNLEILCLRGSYIEQLPV--EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 169 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
.+.. + ..++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...++.+++|++|+++++..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l---- 186 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL---- 186 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC----
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc----
Confidence 6665 3 336677777777777776666665 4666777777777766445555544456666666666653322
Q ss_pred hhhhcccccChhhhcCCCCCcEEEccCCCCC
Q 040303 245 VEAAGVKNASLEELKRLPNLTTLELCIPDVN 275 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 275 (552)
.......++.+++|++|++++|.+.
T Consensus 187 ------~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 187 ------QSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp ------CEECTTTTTTCSEEEEEEEECSCST
T ss_pred ------CccCHHHHhccccCCeecCCCCccc
Confidence 1112344555666666666655543
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=3e-21 Score=204.84 Aligned_cols=178 Identities=17% Similarity=0.118 Sum_probs=112.7
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhC-CC-CccEEEeeccc-cc--cccchhcCCCCCcEEEccCCCCCC------hhh
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRK-LT-QVRVLDLTYMH-LS--LLPSSLGLLTNLRTLCLYCSELQD------IAV 175 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~-l~-~Lr~L~l~~~~-~~--~lp~~i~~l~~L~~L~l~~~~~~~------~~~ 175 (552)
.+++|++|+++++.... ..+..+ .. ++ +|++|++++|. +. .++..+..+++|++|++++|.+.+ +..
T Consensus 110 ~~~~L~~L~L~~~~i~~-~~~~~l-~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSD-LDLDRL-AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCH-HHHHHH-HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecH-HHHHHH-HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 57888888888774432 122222 33 33 48888888775 22 344445578888888888887543 134
Q ss_pred hcCCCCccEEEecCCcCc-----ccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcc
Q 040303 176 IGELKNLEILCLRGSYIE-----QLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGV 250 (552)
Q Consensus 176 i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 250 (552)
..++++|++|+++++.+. .++..+.++++|++|++++|. +..++.. ++.+++|++|++..+... ..
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~-------~~ 258 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNED-------IG 258 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCC-------TT
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccc-------cc
Confidence 567788888888887664 344456677888888888876 5556644 677888888887632210 00
Q ss_pred cccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccCCceEEEEecc
Q 040303 251 KNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGR 295 (552)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~ 295 (552)
.......+..+++|+.|+++.+....+|..+ .+++|+.|.++++.
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 1223445666777777777766555566555 56777777776544
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=3.5e-19 Score=186.98 Aligned_cols=255 Identities=22% Similarity=0.230 Sum_probs=178.9
Q ss_pred CcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEc
Q 040303 86 KFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCL 165 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l 165 (552)
.+++.|+++++.+.. +|.... ++|++|++++|... .+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~-~~L~~L~L~~N~l~--~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP-AHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC-TTCSEEEECSCCCS--CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCc-cChhhC-CCCcEEEecCCCCC--CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 357899999999886 776443 89999999998765 6775 57899999999999998887 7899999999
Q ss_pred cCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 166 YCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 166 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
++|.+.. |. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|.. +++|+.|++.++...
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~----~~~L~~L~L~~N~l~--- 174 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT--- 174 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS---
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc----cCCCCEEECCCCCCC---
Confidence 9999887 44 678899999999999988864 4889999999986 6677652 467888888754431
Q ss_pred hhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchh
Q 040303 245 VEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSG 324 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 324 (552)
.+. ..+++|+.|++++|.+..+|...
T Consensus 175 ---------~l~--~~~~~L~~L~Ls~N~l~~l~~~~------------------------------------------- 200 (622)
T 3g06_A 175 ---------SLP--MLPSGLQELSVSDNQLASLPTLP------------------------------------------- 200 (622)
T ss_dssp ---------CCC--CCCTTCCEEECCSSCCSCCCCCC-------------------------------------------
T ss_pred ---------CCc--ccCCCCcEEECCCCCCCCCCCcc-------------------------------------------
Confidence 111 45678999999988877766432
Q ss_pred HHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCcccc
Q 040303 325 HIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFF 404 (552)
Q Consensus 325 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~ 404 (552)
++|+.|.+.++.- ..++ ..+++|+.|++++|. +..+ +
T Consensus 201 -----~~L~~L~L~~N~l---~~l~-----~~~~~L~~L~Ls~N~------------------L~~l--------p---- 237 (622)
T 3g06_A 201 -----SELYKLWAYNNRL---TSLP-----ALPSGLKELIVSGNR------------------LTSL--------P---- 237 (622)
T ss_dssp -----TTCCEEECCSSCC---SSCC-----CCCTTCCEEECCSSC------------------CSCC--------C----
T ss_pred -----chhhEEECcCCcc---cccC-----CCCCCCCEEEccCCc------------------cCcC--------C----
Confidence 3444444444332 2222 123667777777665 1110 0
Q ss_pred ccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCC
Q 040303 405 LKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECP 475 (552)
Q Consensus 405 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~ 475 (552)
..+++|+.|++++|.+..++. .+++|+.|++++| +++.+|. .+..+++|+.|++.+++
T Consensus 238 --~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred --CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 235667777777776654332 3467777777775 5666664 36677777777777765
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=184.60 Aligned_cols=172 Identities=20% Similarity=0.329 Sum_probs=135.4
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCcc
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLE 183 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~ 183 (552)
.++...+.+.+++... .+|.++ .++|++|++++|.++.+|. .++++++|++|++++|.+.. +..+.++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~--~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN--SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS--SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc--cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 4555666777766555 788765 3589999999999998876 79999999999999999887 56799999999
Q ss_pred EEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCc-ccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCC
Q 040303 184 ILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPP-NVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRL 261 (552)
Q Consensus 184 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 261 (552)
+|++++|.++.+|.. ++++++|++|++++|. +..+|. ..++.+++|++|+++++... .......++.+
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~---------~~~~~~~~~~l 173 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTF---------TKIQRKDFAGL 173 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC---------CEECTTTTTTC
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccc---------cccCHHHccCC
Confidence 999999999999887 8899999999999987 778887 45789999999999855321 11234567889
Q ss_pred CCCcEEEccCCCCCcC-CCcc-cccCCceEEEEe
Q 040303 262 PNLTTLELCIPDVNTL-PKGL-FFEKLERYRICI 293 (552)
Q Consensus 262 ~~L~~L~l~~~~~~~~-p~~~-~l~~L~~L~l~~ 293 (552)
++|+.|++++|.+..+ |..+ .+++|+.|.+..
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 9999999999887655 3333 455555555543
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1.4e-19 Score=173.24 Aligned_cols=201 Identities=23% Similarity=0.349 Sum_probs=162.6
Q ss_pred cccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccc-cccc-cchhcCCCC
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMH-LSLL-PSSLGLLTN 159 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~i~~l~~ 159 (552)
..++++++|+++++.+....+..+ .+++|++|++++|... .++...|.++++|++|++++|. +..+ |..+..+++
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 356789999999999887443433 8899999999988765 5655556889999999999996 7776 677899999
Q ss_pred CcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 160 LRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 160 L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
|++|++++|.+.. +..+.++++|++|++++|.+..+|.. ++++++|++|++++|. +..++...+..+++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence 9999999999876 57789999999999999999888765 7889999999999986 777877667889999999998
Q ss_pred ccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc-c-cccCCceEEEEeccc
Q 040303 237 SFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG-L-FFEKLERYRICIGRW 296 (552)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~-~l~~L~~L~l~~~~~ 296 (552)
++.. .......+..+++|+.|++++|.+..++.. + .+++|+.|.+.++.|
T Consensus 186 ~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 186 QNRV----------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSCC----------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCcc----------cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 5543 122356678899999999999998888765 3 678888888866653
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.3e-21 Score=207.68 Aligned_cols=202 Identities=18% Similarity=0.140 Sum_probs=124.9
Q ss_pred cCcccEEEeecCCCcccC---C------------Ccc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecc-cc
Q 040303 85 LKFYTSIVLHDSKMNVLL---P------------EVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYM-HL 147 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~---~------------~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~ 147 (552)
.+++++|++.++.....+ | ... .+++|+.|+++++.... ..+..+...+++|++|++++| .+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCCC
Confidence 467888888876422101 1 111 57889999999876442 233334336889999999988 55
Q ss_pred cc--ccchhcCCCCCcEEEccCCCCCC--hhhhc----CCCCccEEEecCCc--Cc--ccchhhccCCCCCEEeccCCCC
Q 040303 148 SL--LPSSLGLLTNLRTLCLYCSELQD--IAVIG----ELKNLEILCLRGSY--IE--QLPVEIGQLTRLRSLDLRDCDR 215 (552)
Q Consensus 148 ~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~i~----~L~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~ 215 (552)
.. ++..+.++++|++|++++|.+.+ +..+. .+++|++|++++|. +. .++.-+.++++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 55666688999999999888654 33333 66789999998885 32 2333345678999999998865
Q ss_pred CCccCcccccCCCCCcEEEcccccc-chhhhhhhcccccChhhhcCCCCCcEE-EccCCCCCcCCCcc-cccCCceEEEE
Q 040303 216 LQVIPPNVLSNLSHLEELYIRSFNK-WEVEVEAAGVKNASLEELKRLPNLTTL-ELCIPDVNTLPKGL-FFEKLERYRIC 292 (552)
Q Consensus 216 ~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~p~~~-~l~~L~~L~l~ 292 (552)
+..++.. +..+++|++|++..+.. .... ........+.++++|+.| .+.......++..+ .+++|+.|.+.
T Consensus 224 ~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~-----~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 224 LEKLATL-LQRAPQLEELGTGGYTAEVRPD-----VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp HHHHHHH-HHHCTTCSEEECSBCCCCCCHH-----HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECT
T ss_pred HHHHHHH-HhcCCcceEcccccccCccchh-----hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEcc
Confidence 6666654 67888899998763321 0000 001122355666677766 34333333344333 45666666654
Q ss_pred e
Q 040303 293 I 293 (552)
Q Consensus 293 ~ 293 (552)
+
T Consensus 298 ~ 298 (594)
T 2p1m_B 298 Y 298 (594)
T ss_dssp T
T ss_pred C
Confidence 3
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.4e-19 Score=173.47 Aligned_cols=224 Identities=20% Similarity=0.144 Sum_probs=117.4
Q ss_pred cCcccEEEeecCCCcccCCC-c-cCCCCceEEEeecCCCCCc-ccChhHhhCCCCccEEEeeccccccccchhcCCCCCc
Q 040303 85 LKFYTSIVLHDSKMNVLLPE-V-LECPQLQLLSLWTEKSSLI-TLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLR 161 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~-~-~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 161 (552)
.+++++|+++++.+.. ++. . ..+++|++|++++|..... ..+..+ ..+++|++|++++|.+..+|..+..+++|+
T Consensus 27 ~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCC
Confidence 3456666666665554 332 2 2556666666665544310 112332 445666666666665555555555666666
Q ss_pred EEEccCCCCCC-h--hhhcCCCCccEEEecCCcCcc-cchhhccCCCCCEEeccCCCCCC-ccCcccccCCCCCcEEEcc
Q 040303 162 TLCLYCSELQD-I--AVIGELKNLEILCLRGSYIEQ-LPVEIGQLTRLRSLDLRDCDRLQ-VIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 162 ~L~l~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~ 236 (552)
+|++++|.+.. + ..+.++++|++|++++|.+.. .|..+..+++|++|++++|...+ .+|.. ++.+++|++|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEECC
Confidence 66666655544 2 345556666666666655543 23335555666666665554222 13333 4555666666655
Q ss_pred ccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcc
Q 040303 237 SFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTD 316 (552)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~ 316 (552)
++.. .......+..+++|+.|++++|.+..++..
T Consensus 184 ~n~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------------------ 217 (306)
T 2z66_A 184 QCQL----------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------------------------------------ 217 (306)
T ss_dssp TSCC----------CEECTTTTTTCTTCCEEECTTSCCSBCCSG------------------------------------
T ss_pred CCCc----------CCcCHHHhcCCCCCCEEECCCCccCccChh------------------------------------
Confidence 3322 111233445555566666655554443321
Q ss_pred cccccchhHHHHhchheeeeecCCCCCcceeeeccccCccc-ccccEEEeecCC
Q 040303 317 NCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYS-SQLKHLWVEGCQ 369 (552)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~ 369 (552)
....+++|+.|++.++.- ....+. ....+ ++|++|++++++
T Consensus 218 --------~~~~l~~L~~L~L~~N~l---~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 218 --------PYKCLNSLQVLDYSLNHI---MTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp --------GGTTCTTCCEEECTTSCC---CBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred --------hccCcccCCEeECCCCCC---cccCHH-HHHhhhccCCEEEccCCC
Confidence 112356788888877654 222221 22345 489999999987
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=1.7e-21 Score=200.22 Aligned_cols=394 Identities=15% Similarity=0.047 Sum_probs=222.1
Q ss_pred cCcccEEEeecCCCcccC-CC-ccCCCCceEEEeecCCCCCc---ccChhHhhCCCCccEEEeecccccc-ccchh-cCC
Q 040303 85 LKFYTSIVLHDSKMNVLL-PE-VLECPQLQLLSLWTEKSSLI---TLPDNFFRKLTQVRVLDLTYMHLSL-LPSSL-GLL 157 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~-~~-~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i-~~l 157 (552)
++++++|+++++.+.... .. +..+++|++|++++|..... .++. .+..+++|++|++++|.+.. -+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 356788888888876522 12 22678899999988865421 2233 34778889999999888754 12222 334
Q ss_pred C----CCcEEEccCCCCCC------hhhhcCCCCccEEEecCCcCccc-chhhc-----cCCCCCEEeccCCCCCCc---
Q 040303 158 T----NLRTLCLYCSELQD------IAVIGELKNLEILCLRGSYIEQL-PVEIG-----QLTRLRSLDLRDCDRLQV--- 218 (552)
Q Consensus 158 ~----~L~~L~l~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~~~~--- 218 (552)
. +|++|++++|.+.. +..+.++++|++|++++|.+... +..+. ..++|++|++++|. +..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence 4 69999999988763 56788888999999998877621 22222 25679999998886 333
Q ss_pred --cCcccccCCCCCcEEEccccccchhhhhhhcccccChhhh-cCCCCCcEEEccCCCCCc-----CCCcc-cccCCceE
Q 040303 219 --IPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEEL-KRLPNLTTLELCIPDVNT-----LPKGL-FFEKLERY 289 (552)
Q Consensus 219 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~-----~p~~~-~l~~L~~L 289 (552)
++.. ++.+++|++|+++++...... .......+ ...++|+.|++++|.+.. ++..+ .+++|+.|
T Consensus 160 ~~l~~~-l~~~~~L~~L~L~~n~i~~~~------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 160 EPLASV-LRAKPDFKELTVSNNDINEAG------VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp HHHHHH-HHHCTTCCEEECCSSBCHHHH------HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHH-HhhCCCCCEEECcCCCcchHH------HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 2333 567788999998755431110 00011112 145688899998887665 23333 56777777
Q ss_pred EEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcce--eeeccccCcccccccEEEeec
Q 040303 290 RICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDII--ELVNNKLGSYSSQLKHLWVEG 367 (552)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~ 367 (552)
.++.+..... ............+++|+.|++.++.-.... .++. ....+++|++|++++
T Consensus 233 ~Ls~n~l~~~-----------------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 233 ALGSNKLGDV-----------------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAG 293 (461)
T ss_dssp ECCSSBCHHH-----------------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTT
T ss_pred eccCCcCChH-----------------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCC
Confidence 7644321000 000001111123567888888776431100 0121 123467888888888
Q ss_pred CCCCCCcchhhhhhcccccccceeeeccCCCCCccccc-cccCCCcccccccceeeeEeccCCCCccccccCcceEEEEe
Q 040303 368 CQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFL-KGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVY 446 (552)
Q Consensus 368 c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~ 446 (552)
|. + ...+...+ ... ....++|+.|++++|.+........+.....+++|++|+++
T Consensus 294 n~--i-----------~~~~~~~l-----------~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 294 NE--L-----------GDEGARLL-----------CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp CC--C-----------HHHHHHHH-----------HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred CC--C-----------chHHHHHH-----------HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 75 0 00000000 000 02346889999998876542111111111156889999998
Q ss_pred cCCCccccccchhHhh----hcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCC----ccccc
Q 040303 447 GCGELRCLFSSSIVNS----FIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTG----DVHIE 518 (552)
Q Consensus 447 ~C~~L~~lp~~~~~~~----l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~~ 518 (552)
+| .+........... .++|++|++.+|. ++.... ......+..+++|++|++++++ +...... .++..
T Consensus 350 ~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~-~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 350 NN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSC-SSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQP 425 (461)
T ss_dssp SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHH-HHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTST
T ss_pred CC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhH-HHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccC
Confidence 87 5655432111121 5689999999884 442100 0001123447899999999884 3332111 12223
Q ss_pred CCCccEEEeecCCCcc
Q 040303 519 FPTLETLEVIRCPEFL 534 (552)
Q Consensus 519 ~~~L~~L~i~~C~~L~ 534 (552)
.+.|+.|.+.++..-.
T Consensus 426 ~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TCCCCEEECTTCCCCH
T ss_pred CcchhheeecccccCH
Confidence 4578888888775543
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.1e-18 Score=183.09 Aligned_cols=255 Identities=19% Similarity=0.148 Sum_probs=185.3
Q ss_pred CCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEe
Q 040303 109 PQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCL 187 (552)
Q Consensus 109 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l 187 (552)
.++++|+++++... .+|..++ ++|++|++++|.++.+|. .+++|++|++++|.++. |. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC--ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 35888888887765 7777652 788999999998888887 57889999999888877 44 7788899999
Q ss_pred cCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEE
Q 040303 188 RGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTL 267 (552)
Q Consensus 188 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 267 (552)
++|.++.+|. .+++|++|++++|. +..+|.. +++|++|+++++.... .. ....+|+.|
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~-----------l~---~~~~~L~~L 166 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS-----------LP---ALPSELCKL 166 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC-----------CC---CCCTTCCEE
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC-----------cC---CccCCCCEE
Confidence 8888888876 66788888888876 6777753 3788888887443300 11 134578888
Q ss_pred EccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCccee
Q 040303 268 ELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIE 347 (552)
Q Consensus 268 ~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 347 (552)
++++|.+..+|. .+++|+.|++.++.- ..
T Consensus 167 ~L~~N~l~~l~~------------------------------------------------~~~~L~~L~Ls~N~l---~~ 195 (622)
T 3g06_A 167 WAYNNQLTSLPM------------------------------------------------LPSGLQELSVSDNQL---AS 195 (622)
T ss_dssp ECCSSCCSCCCC------------------------------------------------CCTTCCEEECCSSCC---SC
T ss_pred ECCCCCCCCCcc------------------------------------------------cCCCCcEEECCCCCC---CC
Confidence 888777666552 135666777766543 23
Q ss_pred eeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceeeeEecc
Q 040303 348 LVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWK 427 (552)
Q Consensus 348 ~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 427 (552)
++ ..+++|+.|++++|. +..+. ..+++|+.|++++|.+..++
T Consensus 196 l~-----~~~~~L~~L~L~~N~------------------l~~l~--------------~~~~~L~~L~Ls~N~L~~lp- 237 (622)
T 3g06_A 196 LP-----TLPSELYKLWAYNNR------------------LTSLP--------------ALPSGLKELIVSGNRLTSLP- 237 (622)
T ss_dssp CC-----CCCTTCCEEECCSSC------------------CSSCC--------------CCCTTCCEEECCSSCCSCCC-
T ss_pred CC-----CccchhhEEECcCCc------------------ccccC--------------CCCCCCCEEEccCCccCcCC-
Confidence 22 135789999999886 11111 13588999999999877654
Q ss_pred CCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccccCCccEEEecccc
Q 040303 428 SQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLE 505 (552)
Q Consensus 428 ~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 505 (552)
. .+++|+.|+++++ +++.+|. .+++|++|++.+| .++.++ . ....+++|+.|++.+++
T Consensus 238 ---~----~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp--~----~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 ---V----LPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLP--E----SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ---C----CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCC--G----GGGGSCTTCEEECCSCC
T ss_pred ---C----CCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCC--H----HHhhccccCEEEecCCC
Confidence 1 6689999999996 7888875 5689999999998 466652 3 24458999999999986
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.5e-18 Score=176.77 Aligned_cols=240 Identities=21% Similarity=0.312 Sum_probs=148.9
Q ss_pred ccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCCcEEEcc
Q 040303 88 YTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLRTLCLY 166 (552)
Q Consensus 88 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 166 (552)
.+.++..+..+.. +|... .++++.|++++|... .++...|.++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~-iP~~~-~~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGI-STNTRLLNLHENQIQ--IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSS-CCSCC-CTTCSEEECCSCCCC--EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCc-CCCCC-CCCCcEEEccCCcCC--eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3455555555555 55433 256777777776554 455445567777777777777766554 456677777777777
Q ss_pred CCCCCC-h-hhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchh
Q 040303 167 CSELQD-I-AVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 167 ~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
+|.+.. + ..+.++++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+..+++|++|+++++...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--
Confidence 777665 3 456777777777777777766654 46667777777777766666666655667777777777644321
Q ss_pred hhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc-c-cccCCceEEEEecccccCCCCCCcccceeeecCccccccc
Q 040303 244 EVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG-L-FFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISF 321 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 321 (552)
....+..+++|+.|++++|.+..++.. + .+++|+.|.+..+... ..
T Consensus 199 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~----------------------~~ 246 (440)
T 3zyj_A 199 ----------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ----------------------VI 246 (440)
T ss_dssp ----------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----------------------EE
T ss_pred ----------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee----------------------EE
Confidence 223466667777777777776655433 3 5666666665433210 11
Q ss_pred chhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC
Q 040303 322 KSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 322 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
+......+++|+.|++.++.- ..++.. .+..+++|+.|++++++
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l---~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNL---TLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCC---CCCCTT-TTSSCTTCCEEECCSSC
T ss_pred ChhhhcCCCCCCEEECCCCCC---CccChh-HhccccCCCEEEcCCCC
Confidence 112222467888888887654 333322 34568999999999987
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=9.4e-19 Score=178.92 Aligned_cols=240 Identities=20% Similarity=0.250 Sum_probs=156.8
Q ss_pred ccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCCcEEEcc
Q 040303 88 YTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLRTLCLY 166 (552)
Q Consensus 88 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 166 (552)
.+.++..+..+.. +|... .+++++|++++|... .++...|.++++|++|++++|.+..++ ..+.++.+|++|+++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~-~~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI-PSNTRYLNLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCc-cCCCC-CCCccEEECcCCcCc--eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456666555555 55322 257777777777654 455555577777888888777776654 567777778888887
Q ss_pred CCCCCC-h-hhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchh
Q 040303 167 CSELQD-I-AVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 167 ~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
+|.+.. + ..+.++++|++|++++|.+..+|. .+.++++|++|++++|..++.++...+..+++|+.|+++++...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 209 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-- 209 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS--
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc--
Confidence 777666 3 457777778888887777776665 46677778888877766677777665677777888877644330
Q ss_pred hhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc-c-cccCCceEEEEecccccCCCCCCcccceeeecCccccccc
Q 040303 244 EVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG-L-FFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISF 321 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 321 (552)
....+..+++|+.|++++|.+..++.. + .+++|+.|.+..+... ..
T Consensus 210 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~----------------------~~ 257 (452)
T 3zyi_A 210 ----------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS----------------------LI 257 (452)
T ss_dssp ----------SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC----------------------EE
T ss_pred ----------ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc----------------------eE
Confidence 223466777777888877776666443 3 6667777766433211 11
Q ss_pred chhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC
Q 040303 322 KSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 322 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
+......+++|+.|++.++.- ..++.. .+..+++|+.|++++++
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l---~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNL---SSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCC---SCCCTT-SSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcC---CccChH-HhccccCCCEEEccCCC
Confidence 112223467888888887653 333322 34568899999999987
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=4.3e-20 Score=179.49 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=81.5
Q ss_pred ccChhHhhCCCCccEEEeecccccccc-chhcCCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCC
Q 040303 125 TLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLT 203 (552)
Q Consensus 125 ~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~ 203 (552)
..+..++..+++|++|++++|.+..++ ..++++++|++|++++|.+.....+.++++|++|++++|.++.+| ..+
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~ 99 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGP 99 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECT
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCC
Confidence 344455566667777777777776654 467777777777777777765223777777777777777776655 236
Q ss_pred CCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC
Q 040303 204 RLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN 275 (552)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 275 (552)
+|++|++++|. +..++. ..+++|++|+++++... ......++.+++|+.|++++|.+.
T Consensus 100 ~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~----------~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 100 SIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKIT----------MLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp TCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCC----------SGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCC----------CccchhhhccCCCCEEECCCCCCC
Confidence 77777777765 455443 23566666666533321 011223445556666666655443
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=4e-21 Score=197.37 Aligned_cols=366 Identities=21% Similarity=0.192 Sum_probs=231.9
Q ss_pred CCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccc-----cccchhcCCCCCcEEEccCCCCCC--hhhh-cCCC
Q 040303 109 PQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLS-----LLPSSLGLLTNLRTLCLYCSELQD--IAVI-GELK 180 (552)
Q Consensus 109 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~~~i-~~L~ 180 (552)
++|++|+++++.... .....++..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCH-HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCc-hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 578999999887652 223344688999999999999887 567889999999999999999876 4444 3465
Q ss_pred ----CccEEEecCCcCc-----ccchhhccCCCCCEEeccCCCCCCcc-C----cccccCCCCCcEEEccccccchhhhh
Q 040303 181 ----NLEILCLRGSYIE-----QLPVEIGQLTRLRSLDLRDCDRLQVI-P----PNVLSNLSHLEELYIRSFNKWEVEVE 246 (552)
Q Consensus 181 ----~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~-~----~~~l~~l~~L~~L~l~~~~~~~~~~~ 246 (552)
+|++|++++|.+. .+|..+.++++|++|++++|. +... + .......++|++|+++++.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--- 157 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--- 157 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH---
Confidence 7999999999887 467889999999999999987 4322 1 12123367899999985543110
Q ss_pred hhcccccChhhhcCCCCCcEEEccCCCCCcCCCc-c------cccCCceEEEEecccccCCCCCCcccceeeecCccccc
Q 040303 247 AAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG-L------FFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCI 319 (552)
Q Consensus 247 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 319 (552)
........+..+++|++|++++|.+...... + ..++|+.|.+.++..... .+.
T Consensus 158 ---~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----------------~~~ 217 (461)
T 1z7x_W 158 ---SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-----------------NCR 217 (461)
T ss_dssp ---GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-----------------HHH
T ss_pred ---HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-----------------HHH
Confidence 0111345577789999999999886542211 1 144788777644321000 000
Q ss_pred ccchhHHHHhchheeeeecCCCCCcc--eeeeccccCcccccccEEEeecCCCCCCcchhhhhhcccccccceeeeccCC
Q 040303 320 SFKSGHIVQLQRIEDLCLSGLPDQDI--IELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTSEMRSNEIILEDHV 397 (552)
Q Consensus 320 ~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~~c~l~~l~~~~~~ 397 (552)
. -......+++|+.|++.++.-... ..+.. .....+++|++|++++|.- ....
T Consensus 218 ~-l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~~~~~~~~L~~L~L~~n~l------------------~~~~----- 272 (461)
T 1z7x_W 218 D-LCGIVASKASLRELALGSNKLGDVGMAELCP-GLLHPSSRLRTLWIWECGI------------------TAKG----- 272 (461)
T ss_dssp H-HHHHHHHCTTCCEEECCSSBCHHHHHHHHHH-HHTSTTCCCCEEECTTSCC------------------CHHH-----
T ss_pred H-HHHHHHhCCCccEEeccCCcCChHHHHHHHH-HHhcCCCCceEEECcCCCC------------------CHHH-----
Confidence 0 122334568899999988753110 00111 1122478999999998860 0000
Q ss_pred CCCccccccccCCCcccccccceeeeEeccCCCCc-cccccCcceEEEEecCCCcccccc---chhHhhhcccceEEEec
Q 040303 398 NVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPA-MSCGIQTLTRLIVYGCGELRCLFS---SSIVNSFIRLQHLEIDE 473 (552)
Q Consensus 398 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~~l~~L~~L~i~~C~~L~~lp~---~~~~~~l~~L~~L~i~~ 473 (552)
...+......+++|+.|+++++.+.......... .....++|++|++.+|. ++.... ...+..+++|++|++++
T Consensus 273 -~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 273 -CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp -HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred -HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccC
Confidence 0001112345889999999999764321111100 00033799999999985 443211 12466789999999999
Q ss_pred CCchhhhhcccccccccc-ccCCccEEEeccccccc-----cccCCcccccCCCccEEEeecCC
Q 040303 474 CPILEEIIVIDQQERKNV-VFPQLQFLKMVDLEKLT-----SFCTGDVHIEFPTLETLEVIRCP 531 (552)
Q Consensus 474 c~~l~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~L~-----~~~~~~~~~~~~~L~~L~i~~C~ 531 (552)
|. +...... ....... ..++|++|++.+| .++ .++.. + ..+++|++|++++|+
T Consensus 351 n~-i~~~~~~-~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~-l-~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 351 NR-LEDAGVR-ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAAT-L-LANHSLRELDLSNNC 409 (461)
T ss_dssp SB-CHHHHHH-HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHH-H-HHCCCCCEEECCSSS
T ss_pred Cc-cccccHH-HHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHH-H-HhCCCccEEECCCCC
Confidence 84 5443111 0000111 2679999999999 455 33322 2 257999999999985
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.9e-18 Score=176.67 Aligned_cols=198 Identities=19% Similarity=0.268 Sum_probs=165.4
Q ss_pred cccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCC
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNL 160 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L 160 (552)
...+++++|++++|.+....+..+ .+++|+.|++++|... .++...|.++++|++|++++|.+..+|.. ++.+++|
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--CcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 356789999999999988555544 8999999999999766 67766679999999999999999988765 8889999
Q ss_pred cEEEccCCCCCC--hhhhcCCCCccEEEecCC-cCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 161 RTLCLYCSELQD--IAVIGELKNLEILCLRGS-YIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 161 ~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
++|++++|.+.. +..+.++++|++|+++++ .+..+|.. +..+++|++|++++|. +..+|. +..+++|++|+++
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELEMS 226 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEECT
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEECc
Confidence 999999999887 457899999999999996 77777764 8889999999999987 777875 7899999999998
Q ss_pred ccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc-c-cccCCceEEEEecc
Q 040303 237 SFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG-L-FFEKLERYRICIGR 295 (552)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~-~l~~L~~L~l~~~~ 295 (552)
++.. .......+..+++|+.|++++|.+..++.. + .+++|+.|+++.+.
T Consensus 227 ~N~l----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 227 GNHF----------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TSCC----------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcC----------cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 5543 222456788999999999999998777554 3 78899999887654
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=175.64 Aligned_cols=204 Identities=20% Similarity=0.293 Sum_probs=167.6
Q ss_pred cccccCccccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-h
Q 040303 76 SREWLDEGALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-S 153 (552)
Q Consensus 76 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~ 153 (552)
....|. ...++++.|++++|.+....+..+ .+++|++|++++|... .++...|.++++|++|++++|.++.+|. .
T Consensus 55 l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 55 LREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC--EECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred cCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC--ccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 344443 456789999999999988444444 8999999999998765 6777778999999999999999998876 5
Q ss_pred hcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCC-cCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCC
Q 040303 154 LGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGS-YIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSH 229 (552)
Q Consensus 154 i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 229 (552)
+..+++|++|++++|.+.. +..+.++++|++|+++++ .+..+|. .+.++++|++|++++|. +..+|. +..+++
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~ 208 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIK 208 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSS
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcc
Confidence 8999999999999999887 457899999999999996 6777766 48889999999999987 778885 789999
Q ss_pred CcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc--cccCCceEEEEecc
Q 040303 230 LEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL--FFEKLERYRICIGR 295 (552)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~--~l~~L~~L~l~~~~ 295 (552)
|++|+++++.. .......+..+++|+.|++++|.+..++... .+++|+.|+++.+.
T Consensus 209 L~~L~Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 209 LDELDLSGNHL----------SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CCEEECTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred cCEEECCCCcc----------CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 99999986543 1224567888999999999999988776653 77889888886554
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=6.1e-18 Score=161.79 Aligned_cols=191 Identities=21% Similarity=0.242 Sum_probs=156.0
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 167 (552)
++++..++.+.. +|.. ..++|+.|+++++... .++...|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~-~~~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG-IPAASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTT-CCTTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcC-CCCCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 677888777776 6643 3579999999998766 67776679999999999999999876 77899999999999999
Q ss_pred CC-CCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchh
Q 040303 168 SE-LQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 168 ~~-~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
|. +.. +..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++.+++|++|+++++...
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-- 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS-- 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc--
Confidence 97 776 67899999999999999999877 4568899999999999987 77777766899999999999855431
Q ss_pred hhhhhcccccChhhhcCCCCCcEEEccCCCCCcC-CCcc-cccCCceEEEEec
Q 040303 244 EVEAAGVKNASLEELKRLPNLTTLELCIPDVNTL-PKGL-FFEKLERYRICIG 294 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~~-~l~~L~~L~l~~~ 294 (552)
......+..+++|+.|++++|.+..+ |..+ .+++|+.|.+..+
T Consensus 167 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 167 --------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp --------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 11234578899999999999997776 4444 6778888877544
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=5.2e-18 Score=162.24 Aligned_cols=197 Identities=25% Similarity=0.273 Sum_probs=165.6
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
...+++.+++.++.+.. +|... .++++.|++++|... .++...|..+++|++|++++|.++.++.. +.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~-~~~l~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCS--EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCC-CCCCCEEEcCCCcCC--ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 35678999999998887 66544 378999999998875 56666679999999999999999988765 899999999
Q ss_pred EccCCCCCC-hhhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccc
Q 040303 164 CLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKW 241 (552)
Q Consensus 164 ~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (552)
++++|.+.. |..+.++++|++|++++|+++.+|. .+..+++|++|++++|. +..+|...+..+++|+.|+++++..
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l- 160 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL- 160 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC-
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcC-
Confidence 999999888 7888999999999999999998874 58899999999999987 7788887678999999999985543
Q ss_pred hhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc-cccCCceEEEEeccc
Q 040303 242 EVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL-FFEKLERYRICIGRW 296 (552)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~~ 296 (552)
.......+..+++|+.|++++|.+..+|..+ ....|+.+.+.+++|
T Consensus 161 ---------~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 161 ---------TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ---------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ---------CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 1112344678999999999999999999886 677899888877664
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=8.6e-18 Score=159.29 Aligned_cols=196 Identities=30% Similarity=0.430 Sum_probs=154.2
Q ss_pred CcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchh-cCCCCCcEEE
Q 040303 86 KFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSL-GLLTNLRTLC 164 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~l~~L~~L~ 164 (552)
...++++++++.+.. +|... .++++.|+++++... .++...|.++++|++|++++|.+..+|..+ .++++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 346788888888876 66533 267899999988765 677666788999999999999888887764 7899999999
Q ss_pred ccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccc
Q 040303 165 LYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKW 241 (552)
Q Consensus 165 l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (552)
+++|.+.. +..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...++.+++|++|+++++..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l- 169 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL- 169 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcC-
Confidence 99998877 35678899999999999988877654 6889999999999887 7778776678899999999875533
Q ss_pred hhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc--cccCCceEEEEeccc
Q 040303 242 EVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL--FFEKLERYRICIGRW 296 (552)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~--~l~~L~~L~l~~~~~ 296 (552)
.......+..+++|+.|++++|.+..+|... .+++|+.|.+.+++|
T Consensus 170 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 170 ---------KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ---------SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ---------cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 1112345778889999999999988888763 678888888876654
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=5e-20 Score=179.05 Aligned_cols=216 Identities=16% Similarity=0.131 Sum_probs=135.8
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEE
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILC 186 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~ 186 (552)
.+++|+.|++++|... .++...|.++++|++|++++|.+...+. ++.+++|++|++++|.+... ...++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred cCCCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEE
Confidence 4567777777777655 5565556778888888888887766554 77778888888887776551 1337778888
Q ss_pred ecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhh-cCCCCCc
Q 040303 187 LRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEEL-KRLPNLT 265 (552)
Q Consensus 187 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~ 265 (552)
+++|.+..++.. .+++|++|++++|. +..+++..++.+++|++|+++++... ......+ ..+++|+
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID----------TVNFAELAASSDTLE 172 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC----------EEEGGGGGGGTTTCC
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC----------cccHHHHhhccCcCC
Confidence 888777766543 36778888887776 55555544677778888887744331 1112233 3567788
Q ss_pred EEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcc
Q 040303 266 TLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDI 345 (552)
Q Consensus 266 ~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 345 (552)
.|++++|.+..++....+++|+.|.++.+... ..+.. ...+++|+.|++.++.-
T Consensus 173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~----------------------~l~~~-~~~l~~L~~L~L~~N~l--- 226 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA----------------------FMGPE-FQSAAGVTWISLRNNKL--- 226 (317)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCCC----------------------EECGG-GGGGTTCSEEECTTSCC---
T ss_pred EEECCCCcCcccccccccccCCEEECCCCcCC----------------------cchhh-hcccCcccEEECcCCcc---
Confidence 88888877776665555666666665433210 01111 22456777777776643
Q ss_pred eeeeccccCcccccccEEEeecCC
Q 040303 346 IELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 346 ~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
..++.. ...+++|+.|++++|+
T Consensus 227 ~~l~~~--~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 227 VLIEKA--LRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CEECTT--CCCCTTCCEEECTTCC
T ss_pred cchhhH--hhcCCCCCEEEccCCC
Confidence 333332 2456777777777776
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=9.8e-18 Score=161.94 Aligned_cols=192 Identities=21% Similarity=0.264 Sum_probs=165.5
Q ss_pred cccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcE
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRT 162 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 162 (552)
...+++++|++.++.+.. ++....+++|++|++++|... .++. +..+++|++|++++|.+..+| .++.+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~--~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQIT--DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCC--CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCC--CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 347789999999999887 777778999999999998765 5665 589999999999999998876 6899999999
Q ss_pred EEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccch
Q 040303 163 LCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWE 242 (552)
Q Consensus 163 L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 242 (552)
|++++|.+...+.+.++++|++|++++|.+..+|. +..+++|++|++++|. +..++. +..+++|+.|+++++...
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~- 186 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS- 186 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC-
Confidence 99999999885569999999999999999998875 8999999999999987 677776 799999999999855431
Q ss_pred hhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEeccc
Q 040303 243 VEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRW 296 (552)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~ 296 (552)
....+..+++|+.|++++|.+..++....+++|+.|.+.++.+
T Consensus 187 -----------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 187 -----------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -----------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred -----------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 2234889999999999999988888644889999999987764
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=9e-20 Score=193.58 Aligned_cols=198 Identities=19% Similarity=0.140 Sum_probs=132.7
Q ss_pred ccCcccEEEeecCCCcccCCCcc--CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc-----ccchhcC
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVL--ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL-----LPSSLGL 156 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~ 156 (552)
..+++++|+++++.+.+...... .+++|++|++.+|..........++.++++|++|++++|.+.. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 35689999999988765333222 6899999999988422112233445689999999999998653 4444457
Q ss_pred CCCCcEEEccCCC--CCC--h-hhhcCCCCccEEEecCC-cCcccchhhccCCCCCEEeccCCCC------CCccCcccc
Q 040303 157 LTNLRTLCLYCSE--LQD--I-AVIGELKNLEILCLRGS-YIEQLPVEIGQLTRLRSLDLRDCDR------LQVIPPNVL 224 (552)
Q Consensus 157 l~~L~~L~l~~~~--~~~--~-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~------~~~~~~~~l 224 (552)
+++|++|++++|. +.. . ..+.++++|++|++++| .+..+|..+.++++|++|++..+.. +..++.. +
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA-L 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH-H
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH-H
Confidence 8899999999997 322 2 33466899999999999 6677888899999999999776531 2234444 6
Q ss_pred cCCCCCcEEE-ccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCc--CCCcc-cccCCceEEEEe
Q 040303 225 SNLSHLEELY-IRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNT--LPKGL-FFEKLERYRICI 293 (552)
Q Consensus 225 ~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~p~~~-~l~~L~~L~l~~ 293 (552)
+++++|+.|. +.... .......+..+++|++|++++|.+.. ++..+ .+++|+.|.+..
T Consensus 262 ~~~~~L~~Ls~~~~~~-----------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAV-----------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp HTCTTCCEEECCBTCC-----------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred hcCCCcccccCCcccc-----------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 7788888883 22111 11122333466788888888777432 11111 567777777754
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=5.6e-17 Score=156.80 Aligned_cols=199 Identities=24% Similarity=0.296 Sum_probs=160.8
Q ss_pred cccCcccEEEeecCCCccc--CC-CccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc--hhcCC
Q 040303 83 GALKFYTSIVLHDSKMNVL--LP-EVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS--SLGLL 157 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~--~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~i~~l 157 (552)
...+++++|++++|.+... .+ ....+++|++|++++|... .+|..+ ..+++|++|++++|.+..++. .+..+
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSL 125 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE--EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc--cChhhc-CCCCCCCEEECCCCcccccccchhhhhc
Confidence 4578899999999988752 12 3337899999999998765 677664 889999999999999988764 78999
Q ss_pred CCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcc--cchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEE
Q 040303 158 TNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQ--LPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEEL 233 (552)
Q Consensus 158 ~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 233 (552)
++|++|++++|.+.. +..+.++++|++|++++|.+.. +|..+..+++|++|++++|. +..+++..++.+++|++|
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEE
Confidence 999999999999775 6778999999999999998875 78889999999999999987 666655558999999999
Q ss_pred EccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCC-cc-cc-cCCceEEEEecc
Q 040303 234 YIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPK-GL-FF-EKLERYRICIGR 295 (552)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~-~l-~~L~~L~l~~~~ 295 (552)
+++++.. .......+..+++|+.|++++|.+...+. .+ .+ ++|+.|.++++.
T Consensus 205 ~L~~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 205 NMSHNNF----------FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCC----------SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCcc----------CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 9985543 11233457889999999999999766544 33 44 478888876554
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=7.7e-19 Score=170.23 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=105.8
Q ss_pred CCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccc--cccchhc-------CCCCCcEEEccCCCCCC--hhhh
Q 040303 108 CPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLS--LLPSSLG-------LLTNLRTLCLYCSELQD--IAVI 176 (552)
Q Consensus 108 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~-------~l~~L~~L~l~~~~~~~--~~~i 176 (552)
.++|+.|++.++.. .+|..+... |++|+++++.+. .+|..+. ++.+|++|++++|.+.. |..+
T Consensus 42 ~~~L~~l~l~~n~l---~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE---ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCCTT---CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCCceeEeeccccc---ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34566666666654 567666433 778888888774 3666655 68888888888888764 6555
Q ss_pred --cCCCCccEEEecCCcCcccchhhccC-----CCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhc
Q 040303 177 --GELKNLEILCLRGSYIEQLPVEIGQL-----TRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAG 249 (552)
Q Consensus 177 --~~L~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 249 (552)
..+++|++|++++|.+..+|..++.+ ++|++|++++|. +..+++..++.+++|++|+++++.....
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE------ 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH------
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc------
Confidence 78888888888888888777777766 888888888877 5666644478888888888875542100
Q ss_pred ccccChhhh--cCCCCCcEEEccCCCCC
Q 040303 250 VKNASLEEL--KRLPNLTTLELCIPDVN 275 (552)
Q Consensus 250 ~~~~~~~~l--~~l~~L~~L~l~~~~~~ 275 (552)
...+..+ +.+++|+.|++++|.+.
T Consensus 189 --~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 189 --RGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp --HHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred --hHHHHHHHhccCCCCCEEECCCCcCc
Confidence 0012233 67788888888877654
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.4e-17 Score=158.38 Aligned_cols=199 Identities=23% Similarity=0.251 Sum_probs=160.5
Q ss_pred ccCcccEEEeecCCCcccCC-CccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLP-EVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~ 161 (552)
..+++++|+++++.+....+ .+..+++|++|++++|... .++...|.++++|++|++++|.+..++ ..++++++|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 45689999999999988444 3348999999999998765 677766799999999999999998766 5789999999
Q ss_pred EEEccCCCCCC--hhhhcCCCCccEEEecCCcCcc--cchhhccCCCCCEEeccCCCCCCccCcccccCCCCCc----EE
Q 040303 162 TLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQ--LPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLE----EL 233 (552)
Q Consensus 162 ~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L 233 (552)
+|++++|.+.. +..++++++|++|++++|.+.. +|..+.++++|++|++++|. +..++...+..+++|+ .|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 99999999887 3469999999999999998886 78899999999999999987 6777655466666666 78
Q ss_pred EccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc--cccCCceEEEEeccc
Q 040303 234 YIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL--FFEKLERYRICIGRW 296 (552)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~--~l~~L~~L~l~~~~~ 296 (552)
+++++... ..........+|+.|++++|.+..+|... .+++|+.|.+.++.|
T Consensus 183 ~ls~n~l~-----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 183 DLSLNPMN-----------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp ECCSSCCC-----------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ecCCCccc-----------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 88744331 11222333448999999999999998874 688999999877654
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=5.8e-17 Score=153.53 Aligned_cols=179 Identities=26% Similarity=0.327 Sum_probs=151.4
Q ss_pred ccCcccEEEeecCCCcccCCC-ccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLPE-VLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~ 161 (552)
.+.++++|+++++.+....+. +..+++|++|++++|... .++..+|.++++|++|++++|.+..+|.. +..+++|+
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 457899999999999883333 348999999999998766 78888889999999999999999988754 68999999
Q ss_pred EEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 162 TLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 162 ~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
+|++++|.+.. +..+.++++|++|++++|.+..+|.. +..+++|++|++++|. +..++...+..+++|++|+++++
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC
Confidence 99999999887 46689999999999999999988876 7889999999999987 77788766889999999999855
Q ss_pred ccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC
Q 040303 239 NKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN 275 (552)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 275 (552)
.. .......+..+++|+.|++++|...
T Consensus 192 ~l----------~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 192 QL----------KRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CC----------SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cC----------CcCCHHHhccccCCCEEEecCCCee
Confidence 43 1112345788999999999998754
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=2.1e-18 Score=182.95 Aligned_cols=387 Identities=15% Similarity=0.095 Sum_probs=227.0
Q ss_pred CcccEEEeecCCC-cc-cCCCcc-CCCCceEEEeecCCCCCcc--cChhHhhCCCCccEEEeeccccc-----cccchhc
Q 040303 86 KFYTSIVLHDSKM-NV-LLPEVL-ECPQLQLLSLWTEKSSLIT--LPDNFFRKLTQVRVLDLTYMHLS-----LLPSSLG 155 (552)
Q Consensus 86 ~~lr~L~l~~~~~-~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~ 155 (552)
.++++|++.++.. .. .++... .+++|++|++.+|...... ....++..+++|++|+++++.+. .++..+.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 3489999987752 11 122222 6889999999988543111 01234467889999999988775 4566677
Q ss_pred CCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcC----cccchhhccCCCCCEEeccCCCCCCccCcccccCCCCC
Q 040303 156 LLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYI----EQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHL 230 (552)
Q Consensus 156 ~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l----~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 230 (552)
++++|++|++++|.+.. +..+.++++|++|+++++.. ...+..+..+++|+.|++..+. ...+|.. +..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCC
Confidence 88999999999988777 77888899999999975421 2344567788889999888753 4556654 6788899
Q ss_pred cEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCC-CcCCCcc-cccCCceEEEEecccccCCCCCCcccc
Q 040303 231 EELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDV-NTLPKGL-FFEKLERYRICIGRWCWEDTSPTCSRT 308 (552)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~p~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~ 308 (552)
++|+++++.. ... .....+..+++|+.|++..+-. ..++... .+++|+.|++..+.. ...
T Consensus 296 ~~L~Ls~~~l-~~~--------~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~----~~~----- 357 (592)
T 3ogk_B 296 RKLDLLYALL-ETE--------DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD----EQG----- 357 (592)
T ss_dssp CEEEETTCCC-CHH--------HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCC----SST-----
T ss_pred cEEecCCCcC-CHH--------HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcc----ccc-----
Confidence 9999885542 111 1223467888999998873321 1122222 567899998873100 000
Q ss_pred eeeecCccccccc----chhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCcchhhhhhccc
Q 040303 309 FRLLLGTDNCISF----KSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPKESKRCKESTS 384 (552)
Q Consensus 309 ~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~~~~~~~~Li~ 384 (552)
..+.|... ...+...+++|++|.+.. .. +...........+++|++|++++|..
T Consensus 358 -----~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~--l~~~~~~~l~~~~~~L~~L~l~~~~~-------------- 415 (592)
T 3ogk_B 358 -----MEDEEGLVSQRGLIALAQGCQELEYMAVYV-SD--ITNESLESIGTYLKNLCDFRLVLLDR-------------- 415 (592)
T ss_dssp -----TSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SC--CCHHHHHHHHHHCCSCCEEEEEECSC--------------
T ss_pred -----cccccCccCHHHHHHHHhhCccCeEEEeec-CC--ccHHHHHHHHhhCCCCcEEEEeecCC--------------
Confidence 00000011 112234578899998833 22 22211111123478899999985430
Q ss_pred ccc-cceeeeccCCCCCccccccccCCCccccccccee--eeEeccCCCCccccccCcceEEEEecCCCccccccchhHh
Q 040303 385 EMR-SNEIILEDHVNVPNTFFLKGGLPNLETLELYNVN--VERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVN 461 (552)
Q Consensus 385 ~c~-l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~ 461 (552)
|+ +...... ..+......+++|+.|++++|. +.... .......+++|++|++.+|. ++.......+.
T Consensus 416 -~n~l~~~p~~-----~~~~~~~~~~~~L~~L~L~~~~~~l~~~~---~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~ 485 (592)
T 3ogk_B 416 -EERITDLPLD-----NGVRSLLIGCKKLRRFAFYLRQGGLTDLG---LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSR 485 (592)
T ss_dssp -CSCCSSCCCH-----HHHHHHHHHCTTCCEEEEECCGGGCCHHH---HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHT
T ss_pred -CccccCchHH-----HHHHHHHHhCCCCCEEEEecCCCCccHHH---HHHHHHhCccceEeeccCCC-CCHHHHHHHHh
Confidence 00 0000000 0000112357888888887652 22110 11111146888888888764 44321112456
Q ss_pred hhcccceEEEecCCchhhhhccccccccccccCCccEEEeccccccccccCCcccccCCCccEEEeecC
Q 040303 462 SFIRLQHLEIDECPILEEIIVIDQQERKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEVIRC 530 (552)
Q Consensus 462 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C 530 (552)
.+++|++|+|.+|+ ++...... ....+++|++|++++|. ++......+...+|.++...+...
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~----~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAA----AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHH----HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCcccCeeeccCCC-CcHHHHHH----HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 77888999999887 43321111 23347888999999887 655544445556777777666553
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=2.1e-18 Score=167.12 Aligned_cols=242 Identities=15% Similarity=0.115 Sum_probs=138.1
Q ss_pred CcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHh------hCCCCccEEEeeccccc-cccchh--c
Q 040303 86 KFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFF------RKLTQVRVLDLTYMHLS-LLPSSL--G 155 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~------~~l~~Lr~L~l~~~~~~-~lp~~i--~ 155 (552)
++++.++++++.+ . +|... .. |+.|++.++......+|..+. .++++|++|++++|.+. .+|..+ +
T Consensus 43 ~~L~~l~l~~n~l-~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3455566666666 2 44322 21 666666655443224444431 15677777777777765 466655 6
Q ss_pred CCCCCcEEEccCCCCCC-hhhhcCC-----CCccEEEecCCcCcccc-hhhccCCCCCEEeccCCCCCCc--cCccc-cc
Q 040303 156 LLTNLRTLCLYCSELQD-IAVIGEL-----KNLEILCLRGSYIEQLP-VEIGQLTRLRSLDLRDCDRLQV--IPPNV-LS 225 (552)
Q Consensus 156 ~l~~L~~L~l~~~~~~~-~~~i~~L-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--~~~~~-l~ 225 (552)
.+++|++|++++|.+.. |..++++ ++|++|++++|.+..+| ..++++++|++|++++|...+. ++... ++
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 77777777777777665 5555555 67777777777776655 4567777777777777653332 22220 26
Q ss_pred CCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCC-c--ccccCCceEEEEecccccCCCC
Q 040303 226 NLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPK-G--LFFEKLERYRICIGRWCWEDTS 302 (552)
Q Consensus 226 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~--~~l~~L~~L~l~~~~~~~~~~~ 302 (552)
.+++|++|+++++...... ......+..+++|+.|++++|.+...+. . ..+++|+.|.++.+...
T Consensus 199 ~l~~L~~L~L~~N~l~~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~----- 266 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPS-------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK----- 266 (312)
T ss_dssp SCTTCCEEECTTSCCCCHH-------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-----
T ss_pred cCCCCCEEECCCCcCcchH-------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-----
Confidence 6777777777644331000 0011223466777777777777655431 1 14566666666443311
Q ss_pred CCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC
Q 040303 303 PTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 303 ~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
..+.++ .++|+.|+++++.- ..++. ...+++|++|++++++
T Consensus 267 -----------------~ip~~~---~~~L~~L~Ls~N~l---~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 -----------------QVPKGL---PAKLSVLDLSYNRL---DRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp -----------------SCCSSC---CSEEEEEECCSSCC---CSCCC---TTTSCEEEEEECTTCT
T ss_pred -----------------hhhhhc---cCCceEEECCCCCC---CCChh---HhhCCCCCEEeccCCC
Confidence 011111 15778888877654 33332 3578899999999876
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=5e-17 Score=151.08 Aligned_cols=198 Identities=14% Similarity=0.257 Sum_probs=160.5
Q ss_pred ccccCccccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCC-CCCcccChhHhhCCCCccEEEeec-cccccccc-
Q 040303 77 REWLDEGALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEK-SSLITLPDNFFRKLTQVRVLDLTY-MHLSLLPS- 152 (552)
Q Consensus 77 ~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~-~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp~- 152 (552)
..+|. ...++++|+++++.+....+..+ .+++|++|++++|. .. .++...|.++++|++|++++ +.++.+|.
T Consensus 24 ~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 24 QRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 34444 56689999999999988333334 89999999999986 54 77877779999999999998 89988874
Q ss_pred hhcCCCCCcEEEccCCCCCChhhhcCCCCcc---EEEecCC-cCcccchh-hccCCCCC-EEeccCCCCCCccCcccccC
Q 040303 153 SLGLLTNLRTLCLYCSELQDIAVIGELKNLE---ILCLRGS-YIEQLPVE-IGQLTRLR-SLDLRDCDRLQVIPPNVLSN 226 (552)
Q Consensus 153 ~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~~~~~~~~~l~~ 226 (552)
.+.++++|++|++++|.+...+.+.++.+|+ +|++++| .++.+|.. +..+++|+ +|++++|. +..+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 6889999999999999988833388888888 9999999 99988865 88899999 99999987 67888874444
Q ss_pred CCCCcEEEccccc-cchhhhhhhcccccChhhhcCC-CCCcEEEccCCCCCcCCCcccccCCceEEE
Q 040303 227 LSHLEELYIRSFN-KWEVEVEAAGVKNASLEELKRL-PNLTTLELCIPDVNTLPKGLFFEKLERYRI 291 (552)
Q Consensus 227 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l 291 (552)
++|++|+++++. . .......+..+ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus 179 -~~L~~L~L~~n~~l----------~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYL----------TVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp -CEEEEEECTTCTTC----------CEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred -CCCCEEEcCCCCCc----------ccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 899999998653 2 11133557788 9999999999999988877 6778888875
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=9.9e-18 Score=172.36 Aligned_cols=235 Identities=18% Similarity=0.129 Sum_probs=132.7
Q ss_pred CccEEEeecccccccc-chhcCCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCC
Q 040303 136 QVRVLDLTYMHLSLLP-SSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCD 214 (552)
Q Consensus 136 ~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 214 (552)
+|++|++++|.+..++ ..++.+++|++|++++|.+.....++.+++|++|++++|.++.+|.. ++|++|++++|.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCc
Confidence 6777777777666543 45667777777777777666522266677777777777766655532 667777777665
Q ss_pred CCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEec
Q 040303 215 RLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIG 294 (552)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~ 294 (552)
+..++. ..+++|+.|+++++.. .......++.+++|+.|++++|.+...+.
T Consensus 111 -l~~~~~---~~l~~L~~L~L~~N~l----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------- 161 (487)
T 3oja_A 111 -ISRVSC---SRGQGKKNIYLANNKI----------TMLRDLDEGCRSRVQYLDLKLNEIDTVNF--------------- 161 (487)
T ss_dssp -CCCEEE---CCCSSCEEEECCSSCC----------CSGGGBCGGGGSSEEEEECTTSCCCEEEG---------------
T ss_pred -CCCCCc---cccCCCCEEECCCCCC----------CCCCchhhcCCCCCCEEECCCCCCCCcCh---------------
Confidence 444443 2356666666664332 11122345556666667766665443211
Q ss_pred ccccCCCCCCcccceeeecCcccccccchhHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCCCCCCc
Q 040303 295 RWCWEDTSPTCSRTFRLLLGTDNCISFKSGHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQAPSPK 374 (552)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~lp~ 374 (552)
..+...+++|+.|+++++.- ..++.. ..+++|+.|++++|.
T Consensus 162 ----------------------------~~l~~~l~~L~~L~Ls~N~l---~~~~~~---~~l~~L~~L~Ls~N~----- 202 (487)
T 3oja_A 162 ----------------------------AELAASSDTLEHLNLQYNFI---YDVKGQ---VVFAKLKTLDLSSNK----- 202 (487)
T ss_dssp ----------------------------GGGGGGTTTCCEEECTTSCC---CEEECC---CCCTTCCEEECCSSC-----
T ss_pred ----------------------------HHHhhhCCcccEEecCCCcc---cccccc---ccCCCCCEEECCCCC-----
Confidence 01111235556666655543 222211 246777777777765
Q ss_pred chhhhhhcccccccceeeeccCCCCCccccccccCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCc-cc
Q 040303 375 ESKRCKESTSEMRSNEIILEDHVNVPNTFFLKGGLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGEL-RC 453 (552)
Q Consensus 375 ~~~~~~~Li~~c~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L-~~ 453 (552)
+..+ +.....+++|+.|++++|.+..++.... .+++|+.|++.+++-. ..
T Consensus 203 -------------l~~~-----------~~~~~~l~~L~~L~Ls~N~l~~lp~~l~-----~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 203 -------------LAFM-----------GPEFQSAAGVTWISLRNNKLVLIEKALR-----FSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp -------------CCEE-----------CGGGGGGTTCSEEECTTSCCCEECTTCC-----CCTTCCEEECTTCCBCHHH
T ss_pred -------------CCCC-----------CHhHcCCCCccEEEecCCcCcccchhhc-----cCCCCCEEEcCCCCCcCcc
Confidence 1111 1122456778888888887766554322 6688888888876443 23
Q ss_pred cccchhHhhhcccceEEEec
Q 040303 454 LFSSSIVNSFIRLQHLEIDE 473 (552)
Q Consensus 454 lp~~~~~~~l~~L~~L~i~~ 473 (552)
+|. .+..++.|+.+.+..
T Consensus 254 ~~~--~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 254 LRD--FFSKNQRVQTVAKQT 271 (487)
T ss_dssp HHH--HHTTCHHHHHHHHHH
T ss_pred hHH--HHHhCCCCcEEeccc
Confidence 332 456666666666653
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1.5e-17 Score=157.79 Aligned_cols=174 Identities=28% Similarity=0.369 Sum_probs=113.5
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCcE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLRT 162 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~ 162 (552)
..++++.|++.++.+.. ++....+++|++|++++|... .++ . +..+++|++|++++|.+..+|.. ++++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~--~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLH--DIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCC--CCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCC--Cch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 46667777777777665 555556777777777776654 332 2 46777777777777777665544 567777777
Q ss_pred EEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccc
Q 040303 163 LCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFN 239 (552)
Q Consensus 163 L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (552)
|++++|.+.. +..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...++.+++|++|+++++.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc
Confidence 7777777665 34467777777777777777766654 4667777777777765 556665545677777777776443
Q ss_pred cchhhhhhhcccccChhhhcCCCCCcEEEccCCC
Q 040303 240 KWEVEVEAAGVKNASLEELKRLPNLTTLELCIPD 273 (552)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 273 (552)
. .......++.+++|+.|++++|.
T Consensus 193 l----------~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 L----------KSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp C----------SCCCTTTTTTCTTCCEEECCSSC
T ss_pred C----------CccCHHHHhCCcCCCEEEccCCC
Confidence 2 11122335666777777776664
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=2.7e-16 Score=149.09 Aligned_cols=191 Identities=24% Similarity=0.301 Sum_probs=141.9
Q ss_pred EEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCC
Q 040303 90 SIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSE 169 (552)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 169 (552)
.+.+..+.+.. ......+++|+.|.+.++... .++. +..+++|++|++++|.+..++ .++.+++|++|++++|.
T Consensus 23 ~l~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~--~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 23 KANLKKKSVTD-AVTQNELNSIDQIIANNSDIK--SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTCSCTTS-EECHHHHTTCCEEECTTSCCC--CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC
T ss_pred HHHhcCccccc-ccccccccceeeeeeCCCCcc--cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc
Confidence 33444444443 233346788889988887654 4443 478889999999998887764 68888999999999988
Q ss_pred CCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhh
Q 040303 170 LQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVE 246 (552)
Q Consensus 170 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 246 (552)
+.. +..++++++|++|++++|.+..+|.. ++++++|++|++++|. +..++...++.+++|++|+++++..
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l------ 169 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQL------ 169 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC------
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCc------
Confidence 877 34578889999999999888877765 6788899999998886 6777776568889999999885543
Q ss_pred hhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc--cccCCceEEEEecccc
Q 040303 247 AAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL--FFEKLERYRICIGRWC 297 (552)
Q Consensus 247 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~--~l~~L~~L~l~~~~~~ 297 (552)
.......++.+++|+.|++++|.+..++... .+++|+.|.+..+.|.
T Consensus 170 ----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 170 ----QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 1112344678889999999988887777653 6888888888776643
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.1e-16 Score=152.35 Aligned_cols=191 Identities=23% Similarity=0.296 Sum_probs=143.3
Q ss_pred EEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCC
Q 040303 91 IVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSE 169 (552)
Q Consensus 91 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 169 (552)
++..+..+.. +|... .++|++|++++|... .++...|.++++|++|++++|.+..++. .++++++|++|++++|.
T Consensus 12 ~~c~~~~l~~-ip~~l-~~~l~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFYK-IPDNL-PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCSS-CCSSS-CTTCCEEECTTCCCC--EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCccc-cCCCC-CCCccEEECCCCccc--ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3334444444 55433 257999999998765 6676567899999999999999987765 68999999999999999
Q ss_pred CCC--hhhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCc--cCcccccCCCCCcEEEccccccchhh
Q 040303 170 LQD--IAVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQV--IPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 170 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
+.. +..+.++++|++|++++|.+..++. .++++++|++|++++|. +.. +|.. ++.+++|++|+++++....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~-- 163 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS-- 163 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE--
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCc--
Confidence 887 5789999999999999999887766 58899999999999987 554 5665 8999999999998554311
Q ss_pred hhhhcccccChhhhcCCCCCc-EEEccCCCCCcCCCcc-cccCCceEEEEec
Q 040303 245 VEAAGVKNASLEELKRLPNLT-TLELCIPDVNTLPKGL-FFEKLERYRICIG 294 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~ 294 (552)
........+..++.|. .|++++|.+..++... ...+|+.|.++++
T Consensus 164 -----~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 164 -----IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210 (276)
T ss_dssp -----ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred -----CCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence 1111234445555555 8999999988877664 4446766666433
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=3.9e-17 Score=167.93 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=109.2
Q ss_pred cccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEc
Q 040303 87 FYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCL 165 (552)
Q Consensus 87 ~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l 165 (552)
++++|++++|.+....+..+ .+++|++|++++|... ..++ +..+++|++|++++|.+..+|. .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY--ETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE--EEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC--CCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 55666666665555222222 5555666666555443 2222 3555556666666555554442 255566666
Q ss_pred cCCCCCC-hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchh
Q 040303 166 YCSELQD-IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 166 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
++|.+.. +. ..+++|++|++++|.+..+ |..++.+++|++|++++|...+..|..+.+.+++|++|+++++...
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-- 182 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-- 182 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC--
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc--
Confidence 5555554 22 1345555566655555543 3345555556666655554222233331124555555555533220
Q ss_pred hhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecccccCCCCCCcccceeeecCcccccccch
Q 040303 244 EVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGRWCWEDTSPTCSRTFRLLLGTDNCISFKS 323 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 323 (552)
.......+++|+.|++++|.+..+|..+
T Consensus 183 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------------ 210 (487)
T 3oja_A 183 ----------DVKGQVVFAKLKTLDLSSNKLAFMGPEF------------------------------------------ 210 (487)
T ss_dssp ----------EEECCCCCTTCCEEECCSSCCCEECGGG------------------------------------------
T ss_pred ----------cccccccCCCCCEEECCCCCCCCCCHhH------------------------------------------
Confidence 0122223555555555555544433221
Q ss_pred hHHHHhchheeeeecCCCCCcceeeeccccCcccccccEEEeecCC
Q 040303 324 GHIVQLQRIEDLCLSGLPDQDIIELVNNKLGSYSSQLKHLWVEGCQ 369 (552)
Q Consensus 324 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 369 (552)
..+++|+.|+++++.- ..++.. ...+++|+.|++++|+
T Consensus 211 ---~~l~~L~~L~Ls~N~l---~~lp~~--l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 211 ---QSAAGVTWISLRNNKL---VLIEKA--LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ---GGGTTCSEEECTTSCC---CEECTT--CCCCTTCCEEECTTCC
T ss_pred ---cCCCCccEEEecCCcC---cccchh--hccCCCCCEEEcCCCC
Confidence 2357778888877654 344432 3567899999999987
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=4.5e-16 Score=145.68 Aligned_cols=175 Identities=27% Similarity=0.398 Sum_probs=134.7
Q ss_pred CcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEE
Q 040303 86 KFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLC 164 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~ 164 (552)
...++++++++.+.. +|.... +.++.|++.++... .++...|.++++|++|++++|.+..++. .+.++++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~-~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP-ADTEKLDLQSTGLA--TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC-TTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccc-cCCCCC-CCCCEEEccCCCcC--ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 345678888888776 665432 68889999888765 5666556888999999999998877654 478899999999
Q ss_pred ccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccc
Q 040303 165 LYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKW 241 (552)
Q Consensus 165 l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (552)
+++|.+.. +..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|++|+++++..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l- 167 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQL- 167 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcC-
Confidence 99998877 45678899999999999988888776 5788999999998886 7777775578888899998875543
Q ss_pred hhhhhhhcccccChhhhcCCCCCcEEEccCCCCC
Q 040303 242 EVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN 275 (552)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 275 (552)
.......+..+++|+.|++++|.+.
T Consensus 168 ---------~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 168 ---------QSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ---------SCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ---------CccCHHHHhCCCCCCEEEeeCCcee
Confidence 1112345777888888888887754
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.8e-16 Score=151.57 Aligned_cols=173 Identities=27% Similarity=0.352 Sum_probs=123.7
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
..+++++|+++++.+.. ++....+++|++|++++|... .++. +.++++|++|++++|.+..+|. ++.+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~~~~~l~~L~~L~L~~n~l~--~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLT--DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-ChhHhcCCCCCEEEccCCccC--CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 45677888888887776 566557788888888877655 4444 4778888888888887777654 7778888888
Q ss_pred EccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchh
Q 040303 164 CLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEV 243 (552)
Q Consensus 164 ~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (552)
++++|.+..++.+.++++|++|++++|.++.+ ..+..+++|++|++++|. +..+++ +..+++|+.|+++++...
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~-- 191 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS-- 191 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC--
Confidence 88888777766777788888888888877776 467778888888887776 556654 677788888887744330
Q ss_pred hhhhhcccccChhhhcCCCCCcEEEccCCCCCcCC
Q 040303 244 EVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLP 278 (552)
Q Consensus 244 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p 278 (552)
....+..+++|+.|++++|.+...|
T Consensus 192 ----------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 ----------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ----------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ----------CChhhccCCCCCEEECcCCcccCCc
Confidence 1234677777777777777654433
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2.3e-16 Score=150.80 Aligned_cols=170 Identities=26% Similarity=0.310 Sum_probs=138.1
Q ss_pred cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCCCcEEEccCCCCCChhhhcCCCCccE
Q 040303 106 LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEI 184 (552)
Q Consensus 106 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~ 184 (552)
..+++++.+++.++... .+|..+ .+.+++|++++|.+..+ |..+..+++|++|++++|.+......+.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~--~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT--ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS--SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred cccCCccEEECCCCCCC--cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 36788999999987765 788765 37899999999999876 4679999999999999999888444489999999
Q ss_pred EEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCC
Q 040303 185 LCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNL 264 (552)
Q Consensus 185 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 264 (552)
|++++|.+..+|..+..+++|++|++++|. +..+++..++.+++|++|+++++.. .......+..+++|
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l----------~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNEL----------KTLPPGLLTPTPKL 150 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCC----------CCCCTTTTTTCTTC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCC----------CccChhhcccccCC
Confidence 999999999999999999999999999987 7788876689999999999985543 11233456789999
Q ss_pred cEEEccCCCCCcCCCcc--cccCCceEEE
Q 040303 265 TTLELCIPDVNTLPKGL--FFEKLERYRI 291 (552)
Q Consensus 265 ~~L~l~~~~~~~~p~~~--~l~~L~~L~l 291 (552)
+.|++++|.+..+|..+ .+++|+.|.+
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 99999999988887654 3444444443
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=3.7e-16 Score=150.84 Aligned_cols=181 Identities=21% Similarity=0.300 Sum_probs=153.3
Q ss_pred cccCccccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCC
Q 040303 78 EWLDEGALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLL 157 (552)
Q Consensus 78 ~~~~~~~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l 157 (552)
.++.....+++++|++++|.+.. ++....+++|++|++++|... .++ . +..+++|++|++++|.+..+|. ++.+
T Consensus 55 ~l~~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~l~--~~~-~-~~~l~~L~~L~l~~n~l~~~~~-l~~l 128 (308)
T 1h6u_A 55 TIEGVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGNPLK--NVS-A-IAGLQSIKTLDLTSTQITDVTP-LAGL 128 (308)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCCCS--CCG-G-GTTCTTCCEEECTTSCCCCCGG-GTTC
T ss_pred CchhhhccCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCcCC--Cch-h-hcCCCCCCEEECCCCCCCCchh-hcCC
Confidence 33444567899999999999988 666669999999999999865 454 3 5899999999999999998875 8999
Q ss_pred CCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccc
Q 040303 158 TNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRS 237 (552)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (552)
++|++|++++|.+.....++++++|++|++++|.++.++. +..+++|++|++++|. +..++. +..+++|++|++++
T Consensus 129 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTT
T ss_pred CCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccC
Confidence 9999999999999885559999999999999999998876 8999999999999987 777776 78999999999985
Q ss_pred cccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc
Q 040303 238 FNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG 280 (552)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~ 280 (552)
+... ....+..+++|+.|++++|.+...|..
T Consensus 205 N~l~------------~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 205 NQIS------------DVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp SCCC------------BCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CccC------------ccccccCCCCCCEEEccCCeeecCCee
Confidence 5431 122588999999999999987766643
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=4.8e-16 Score=144.42 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=129.1
Q ss_pred CcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccc-cccccc-hhcCCCCCcEEEccC-CCCCC--
Q 040303 98 MNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMH-LSLLPS-SLGLLTNLRTLCLYC-SELQD-- 172 (552)
Q Consensus 98 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~-- 172 (552)
+.. +|. -.++++.|++.++... .+|...|.++++|++|++++|. ++.+|. .++++++|++|++++ +.++.
T Consensus 23 l~~-ip~--~~~~l~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQR-IPS--LPPSTQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSS-CCC--CCTTCCEEEEESCCCS--EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccc-cCC--CCCcccEEEEeCCcce--EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 444 666 3458999999998766 7777677899999999999996 888776 688999999999998 78877
Q ss_pred hhhhcCCCCccEEEecCCcCcccchhhccCCCCC---EEeccCCCCCCccCcccccCCCCCc-EEEccccccchhhhhhh
Q 040303 173 IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLR---SLDLRDCDRLQVIPPNVLSNLSHLE-ELYIRSFNKWEVEVEAA 248 (552)
Q Consensus 173 ~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~ 248 (552)
+..+.++++|++|++++|.++.+|. +..+++|+ +|++++|..+..++...+..+++|+ +|+++++.....
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i----- 171 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV----- 171 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-----
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-----
Confidence 4678899999999999999998886 78888888 9999998448888877678899999 999874433110
Q ss_pred cccccChhhhcCCCCCcEEEccCCC-CCcCCCc
Q 040303 249 GVKNASLEELKRLPNLTTLELCIPD-VNTLPKG 280 (552)
Q Consensus 249 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~~ 280 (552)
....+.. ++|+.|++++|. +..+|..
T Consensus 172 -----~~~~~~~-~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 172 -----QGYAFNG-TKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp -----CTTTTTT-CEEEEEECTTCTTCCEECTT
T ss_pred -----CHhhcCC-CCCCEEEcCCCCCcccCCHH
Confidence 1122333 688899998884 7666543
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=1.8e-16 Score=151.71 Aligned_cols=185 Identities=21% Similarity=0.198 Sum_probs=152.5
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCS 168 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 168 (552)
.++.+....+.+ +.....+++|+.|+++++... .++. +..+++|++|++++|.+..++. ++++++|++|++++|
T Consensus 27 ~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~--~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK--SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTS-EECHHHHHTCCEEECTTSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCccc-ccchhhcCcccEEEccCCCcc--cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 333444444444 333347889999999998765 5554 5889999999999999998877 999999999999999
Q ss_pred CCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhh
Q 040303 169 ELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAA 248 (552)
Q Consensus 169 ~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 248 (552)
.+..++.+.++++|++|++++|.+..++ .+..+++|++|++++|. +..++ . ++.+++|++|+++++...
T Consensus 101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~------- 169 (291)
T 1h6t_A 101 KVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQIS------- 169 (291)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCC-------
T ss_pred cCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCccc-------
Confidence 9999777999999999999999999884 78999999999999987 66674 3 899999999999855431
Q ss_pred cccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecc
Q 040303 249 GVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGR 295 (552)
Q Consensus 249 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~ 295 (552)
....+..+++|+.|++++|.+..++....+++|+.|.+.++.
T Consensus 170 -----~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 170 -----DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -----CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred -----cchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 122388999999999999999888765588999999998765
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=3.5e-15 Score=146.85 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=39.4
Q ss_pred CCcccccccce-eeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccc
Q 040303 410 PNLETLELYNV-NVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQER 488 (552)
Q Consensus 410 ~~L~~L~l~~~-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 488 (552)
.+|+.|.+.++ .++.++..... .+++|+.|+++++ +++.+|. ..+.+|++|.+.++.+++.++.
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~----~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~~l~~lP~------ 241 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFH----GASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTYNLKKLPT------ 241 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTT----TEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCTTCCCCCC------
T ss_pred cchhHHhhccCCcccCCCHHHhc----cCcccchhhcCCC-CcCccCh----hhhccchHhhhccCCCcCcCCC------
Confidence 34555555443 44444333222 5566666666653 5666654 1245555555555655555532
Q ss_pred cccccCCccEEEec
Q 040303 489 KNVVFPQLQFLKMV 502 (552)
Q Consensus 489 ~~~~l~~L~~L~l~ 502 (552)
...|++|+.+++.
T Consensus 242 -l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 -LEKLVALMEASLT 254 (350)
T ss_dssp -TTTCCSCCEEECS
T ss_pred -chhCcChhhCcCC
Confidence 2235666666654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=2.8e-15 Score=140.21 Aligned_cols=153 Identities=24% Similarity=0.329 Sum_probs=132.7
Q ss_pred ccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~ 161 (552)
...++++|+++++.+....+..+ .+++|++|++++|... .++...|..+++|++|++++|.+..+|. .++.+++|+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 45789999999999988555434 8999999999998776 6777767999999999999999988775 568999999
Q ss_pred EEEccCCCCCC-h-hhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 162 TLCLYCSELQD-I-AVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 162 ~L~l~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
+|++++|.+.. + ..+.++++|++|++++|.++.+|. .++.+++|++|++++|. +..++...+..+++|+.|++.++
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 99999999887 4 457999999999999999998887 58899999999999987 77887766899999999999854
Q ss_pred c
Q 040303 239 N 239 (552)
Q Consensus 239 ~ 239 (552)
.
T Consensus 190 ~ 190 (251)
T 3m19_A 190 Q 190 (251)
T ss_dssp C
T ss_pred c
Confidence 3
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=1.4e-15 Score=159.45 Aligned_cols=175 Identities=27% Similarity=0.348 Sum_probs=147.2
Q ss_pred cccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcE
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRT 162 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 162 (552)
..+++++.|+++++.+.. ++.+..+++|+.|++++|... .++. +..+++|++|+|++|.+..+| .++.+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~Ls~N~l~--~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLT--DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CTTGGGCTTCCEEECTTSCCC--CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-ChHHccCCCCCEEEeeCCCCC--CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 356788999999998887 777778999999999998765 5555 589999999999999998876 6899999999
Q ss_pred EEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccch
Q 040303 163 LCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWE 242 (552)
Q Consensus 163 L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 242 (552)
|++++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +..+++ +..+++|+.|+++++...
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~- 188 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS- 188 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC-
Confidence 999999998877899999999999999999888 578999999999999987 666665 789999999999855431
Q ss_pred hhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCC
Q 040303 243 VEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPK 279 (552)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~ 279 (552)
.+..+..+++|+.|++++|.+...|.
T Consensus 189 -----------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 -----------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -----------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred -----------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23568899999999999888665543
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=4.5e-15 Score=133.30 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=111.9
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc-ccchhcCCCCCcE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL-LPSSLGLLTNLRT 162 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~~ 162 (552)
..+++++|+++++.+.. ++....+++|++|++++|... .++ . +..+++|++|++++|.+.. .|..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~n~~~--~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHAT--NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSC-CTTGGGCTTCSEEEEESCCCS--CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccC-hHHHhcCCCCCEEEccCCCCC--cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 46678888888888876 676668888888888887433 333 3 4778888888888888764 6777888888888
Q ss_pred EEccCCCCCC--hhhhcCCCCccEEEecCCc-CcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 163 LCLYCSELQD--IAVIGELKNLEILCLRGSY-IEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 163 L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
|++++|.+.. +..++++++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++.++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCc
Confidence 8888888776 7778888888888888886 77776 67888888888888876 566662 677788888877644
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=2.6e-16 Score=154.33 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=98.2
Q ss_pred CceEEEeecCCCCCcccChhHhhCC--CCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC---hhhhcCCCCccE
Q 040303 110 QLQLLSLWTEKSSLITLPDNFFRKL--TQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD---IAVIGELKNLEI 184 (552)
Q Consensus 110 ~Lr~L~l~~~~~~~~~~~~~~~~~l--~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~~~i~~L~~L~~ 184 (552)
.++.++++++.. .+..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. +..+.++++|++
T Consensus 48 ~~~~l~l~~~~~-----~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNL-----HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBC-----CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccC-----CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 467777776533 23444666 78888888888877666667778888888888887653 466778888888
Q ss_pred EEecCCcCc-ccchhhccCCCCCEEeccCCCCCCc--cCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCC
Q 040303 185 LCLRGSYIE-QLPVEIGQLTRLRSLDLRDCDRLQV--IPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRL 261 (552)
Q Consensus 185 L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 261 (552)
|++++|.+. ..|..++++++|++|++++|..+.. ++.. ++.+++|++|+++++..... ......+..+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~--------~~~~~~~~~l 193 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE--------KHVQVAVAHV 193 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH--------HHHHHHHHHS
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh--------HHHHHHHHhc
Confidence 888888766 5666777788888888887743442 4433 56677777777764422110 0122335556
Q ss_pred C-CCcEEEccCC
Q 040303 262 P-NLTTLELCIP 272 (552)
Q Consensus 262 ~-~L~~L~l~~~ 272 (552)
+ +|++|++++|
T Consensus 194 ~~~L~~L~l~~~ 205 (336)
T 2ast_B 194 SETITQLNLSGY 205 (336)
T ss_dssp CTTCCEEECCSC
T ss_pred ccCCCEEEeCCC
Confidence 6 6666666654
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=3.7e-16 Score=153.18 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=62.6
Q ss_pred CCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc--ccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccE
Q 040303 109 PQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL--LPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEI 184 (552)
Q Consensus 109 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~ 184 (552)
++++.|.+.++... ..+..+ .++++|++|++++|.+.. +|..+..+++|++|++++|.+.. +..++++++|++
T Consensus 70 ~~l~~L~l~~n~l~--~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMD--QPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEEC--SCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCcccc--ccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 45555555554332 222222 345555555555555432 45555555555555555555443 455555555555
Q ss_pred EEecCC-cCc--ccchhhccCCCCCEEeccCCCCCCc--cCcccccCCC-CCcEEEccc
Q 040303 185 LCLRGS-YIE--QLPVEIGQLTRLRSLDLRDCDRLQV--IPPNVLSNLS-HLEELYIRS 237 (552)
Q Consensus 185 L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~-~L~~L~l~~ 237 (552)
|++++| .++ .+|..+.++++|++|++++|..+.. ++.. +..++ +|++|++++
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSG 204 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCS
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCC
Confidence 555555 444 2444455555555555555522332 2222 44555 555555553
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=3e-15 Score=144.80 Aligned_cols=195 Identities=16% Similarity=0.115 Sum_probs=139.1
Q ss_pred CcccEEEeecCCCcccCCCc---cCCCCceEEEeecCCCCCcccC---hhHhhCCCCccEEEeecccccccc-chhcCCC
Q 040303 86 KFYTSIVLHDSKMNVLLPEV---LECPQLQLLSLWTEKSSLITLP---DNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLT 158 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~---~~~~~Lr~L~l~~~~~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~ 158 (552)
.++++|++++|.+.+..+.. ..+++|++|++++|.... ..+ ...+..+++|++|++++|.+..++ ..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 45888899888887655544 568889999998887653 222 122356888999999998887655 5678889
Q ss_pred CCcEEEccCCCCCC----h--hhhcCCCCccEEEecCCcCcccchh----hccCCCCCEEeccCCCCCCccCcccccCC-
Q 040303 159 NLRTLCLYCSELQD----I--AVIGELKNLEILCLRGSYIEQLPVE----IGQLTRLRSLDLRDCDRLQVIPPNVLSNL- 227 (552)
Q Consensus 159 ~L~~L~l~~~~~~~----~--~~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~~~~~l~~l- 227 (552)
+|++|++++|.+.. + ..++++++|++|++++|+++.+|.. +..+++|++|++++|......|.. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 99999999888643 1 2346888899999999888766653 467888999999888733333655 5555
Q ss_pred --CCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecc
Q 040303 228 --SHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGR 295 (552)
Q Consensus 228 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~ 295 (552)
++|++|+++++... ..+..+. ++|+.|++++|.+..+|....+++|+.|.++++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-----------~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-----------QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSCCC-----------SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCCCC-----------chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 68899988755431 1222232 6888999998888877665577888888776554
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=3.1e-15 Score=135.65 Aligned_cols=171 Identities=25% Similarity=0.334 Sum_probs=122.7
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~ 167 (552)
+.++..++.+.. +|... .++|+.|+++++... .++..+|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~-~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI-PAQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCCC-CCCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 455566565555 44322 457888888887665 66776677888888888888888877664 57888888888888
Q ss_pred CCCCC-h-hhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 168 SELQD-I-AVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 168 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
|.+.. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++|. +..++...+..+++|+.|++.++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~---- 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW---- 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe----
Confidence 88776 3 4568888888888888888877765 5778888888888876 6677766577888888888874432
Q ss_pred hhhhcccccChhhhcCCCCCcEEEccCCC-CCcCCCcc
Q 040303 245 VEAAGVKNASLEELKRLPNLTTLELCIPD-VNTLPKGL 281 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~~~ 281 (552)
.+.+++|+.|+++.|. .+.+|.++
T Consensus 161 -------------~~~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 161 -------------DCTCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp -------------CCCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred -------------ecCCCCHHHHHHHHHhCCceeeccC
Confidence 2345677777777665 33555543
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=8.4e-16 Score=161.15 Aligned_cols=189 Identities=20% Similarity=0.186 Sum_probs=154.9
Q ss_pred cCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEE
Q 040303 85 LKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLC 164 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 164 (552)
+..+..+.+..+.+.. +.....+++|+.|.+.++... .++. +..+++|++|+|++|.+..+|. ++.+++|++|+
T Consensus 20 l~~l~~l~l~~~~i~~-~~~~~~L~~L~~L~l~~n~i~--~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK--SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTS-EECHHHHTTCCCCBCTTCCCC--CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCccc-ccchhcCCCCCEEECcCCCCC--CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEE
Confidence 3344445555555554 334447889999999988765 5653 5899999999999999998877 99999999999
Q ss_pred ccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 165 LYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 165 l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
|++|.+..++.+.++++|++|++++|.+..+| .+..+++|+.|++++|. +..++. ++.+++|+.|+++++...
T Consensus 94 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~--- 166 (605)
T 1m9s_A 94 LDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS--- 166 (605)
T ss_dssp CCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC---
T ss_pred CcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC---
Confidence 99999998778999999999999999999875 69999999999999987 666643 899999999999855431
Q ss_pred hhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcccccCCceEEEEecc
Q 040303 245 VEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGLFFEKLERYRICIGR 295 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~l~~L~~L~l~~~~ 295 (552)
....+..+++|+.|++++|.+..+|....+++|+.|.+..+.
T Consensus 167 ---------~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 167 ---------DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---------CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred ---------CchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 122388999999999999999888755588999999987665
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=1.6e-14 Score=132.99 Aligned_cols=146 Identities=27% Similarity=0.332 Sum_probs=116.1
Q ss_pred ccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCcEEEcc
Q 040303 88 YTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLRTLCLY 166 (552)
Q Consensus 88 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 166 (552)
.+.++.+++.+.. +|... .++|++|++++|... .++...|..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~-~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGI-PTNAQILYLHDNQIT--KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCc-cCCCC-CCCCCEEEcCCCccC--ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4567777777766 66433 378999999988766 56555568889999999999988888754 5889999999999
Q ss_pred CCCCCC-h-hhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 167 CSELQD-I-AVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 167 ~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
+|.+.. + ..+..+++|++|++++|+++.+|..+..+++|++|++++|. +..++...+..+++|+.|++.++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 998877 3 45788999999999999888999888899999999998876 67777665777888888887644
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.7e-14 Score=140.55 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=126.3
Q ss_pred ccCcccEEEeecCCCcccCCC-cc-CCCCceEEEeecCCCCCcccChhHhhCCCCccE-EEeecccccccc-chhcCCCC
Q 040303 84 ALKFYTSIVLHDSKMNVLLPE-VL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRV-LDLTYMHLSLLP-SSLGLLTN 159 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~-L~l~~~~~~~lp-~~i~~l~~ 159 (552)
.++++++|++++|.+.. ++. .+ .+++|++|++++|.... .+|.++|.++.+++. +.+.++.+..+| ..+..+++
T Consensus 28 l~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp CCTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred cCCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 45678888888888877 553 33 78888888888876542 567767777777664 556667777764 45778888
Q ss_pred CcEEEccCCCCCC-h-hhhcCCCCccEEEecCC-cCcccchh-hccC-CCCCEEeccCCCCCCccCcccccCCCCCcEEE
Q 040303 160 LRTLCLYCSELQD-I-AVIGELKNLEILCLRGS-YIEQLPVE-IGQL-TRLRSLDLRDCDRLQVIPPNVLSNLSHLEELY 234 (552)
Q Consensus 160 L~~L~l~~~~~~~-~-~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 234 (552)
|++|++++|.+.. + ..+....++.+|++.++ .+..+|.. +..+ ..+++|++++|. ++.++.. .....+|++|+
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~f~~~~L~~l~ 183 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-AFNGTQLDELN 183 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-SSTTEEEEEEE
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-hccccchhHHh
Confidence 8888888888776 3 34455667778888665 67777654 3444 357888888876 7777776 45667788888
Q ss_pred ccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc
Q 040303 235 IRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG 280 (552)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~ 280 (552)
+.++... .......++.+++|+.|++++|.+..+|..
T Consensus 184 l~~~n~l---------~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 184 LSDNNNL---------EELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp CTTCTTC---------CCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hccCCcc---------cCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 7632221 111223467788888888888888777754
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=6.8e-15 Score=132.11 Aligned_cols=150 Identities=19% Similarity=0.290 Sum_probs=110.4
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccE
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEI 184 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~ 184 (552)
.+++|+.|+++++... .+| . +..+++|++|++++|.+..++ .++.+++|++|++++|.+.. +..++++++|++
T Consensus 42 ~l~~L~~L~l~~n~i~--~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT--DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS--CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc--ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 5678888888887665 566 3 477888888888888766554 67788888888888888775 677888888888
Q ss_pred EEecCCcCcc-cchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCC
Q 040303 185 LCLRGSYIEQ-LPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPN 263 (552)
Q Consensus 185 L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 263 (552)
|++++|.+.. .|..++++++|++|++++|..+..++. ++.+++|+.|+++++... ....+..+++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~------------~~~~l~~l~~ 182 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH------------DYRGIEDFPK 182 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC------------CCTTGGGCSS
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc------------ChHHhccCCC
Confidence 8888887774 667788888888888888765667763 678888888888744330 1236777788
Q ss_pred CcEEEccCCCCC
Q 040303 264 LTTLELCIPDVN 275 (552)
Q Consensus 264 L~~L~l~~~~~~ 275 (552)
|+.|++++|.++
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 888888877654
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.3e-15 Score=143.30 Aligned_cols=170 Identities=22% Similarity=0.186 Sum_probs=100.3
Q ss_pred cCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEE
Q 040303 85 LKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLC 164 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 164 (552)
..++..+.+.++.+.+ ++....+++|++|++++|... .++ . +..+++|++|++++|.+..+|. ++++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~~~~~l~~L~~L~l~~n~i~--~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LVSQKELSGVQNFNGDNSNIQ--SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EECHHHHTTCSEEECTTSCCC--CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccc-ccchhhcCcCcEEECcCCCcc--cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4444555555555554 443345666666666666543 444 2 3566677777777766666655 66667777777
Q ss_pred ccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 165 LYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 165 l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
+++|.+...+.+.. .+|++|++++|.++.+| .+.++++|++|++++|. +..++. ++.+++|+.|+++++...
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~--- 163 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT--- 163 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC---
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc---
Confidence 77766665333333 66777777776666654 46666677777776665 555542 566666666666643320
Q ss_pred hhhhcccccChhhhcCCCCCcEEEccCCCCCcC
Q 040303 245 VEAAGVKNASLEELKRLPNLTTLELCIPDVNTL 277 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 277 (552)
....+..+++|+.|++++|.+...
T Consensus 164 ---------~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 ---------NTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---------BCTTSTTCCCCCEEEEEEEEEECC
T ss_pred ---------chHHhccCCCCCEEeCCCCcccCC
Confidence 114455666666666666654433
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=2.8e-14 Score=130.36 Aligned_cols=145 Identities=22% Similarity=0.324 Sum_probs=100.1
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccc-cchhcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 167 (552)
+.++.+++.+.. +|... .++++.|++.+|... .++...|..+++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~-iP~~l-~~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL-PETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSS-CCSSC-CTTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCc-CCCcc-CcCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 456666666665 55433 257777777777655 56665567777888888888877765 56677778888888887
Q ss_pred CCCCC-h-hhhcCCCCccEEEecCCcCcccc-hhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 168 SELQD-I-AVIGELKNLEILCLRGSYIEQLP-VEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 168 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
|.+.. | ..+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...+..+++|+.|++.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 77776 3 34577777888888777777653 456777777777777766 56666554667777777777633
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=4e-14 Score=129.31 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=102.7
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCccc-ChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEcc
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITL-PDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLY 166 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~ 166 (552)
++++++++.+.. +|... .+.++.|++++|... .+ +..+|..+++|++|++++|.++.++. .++++.+|++|+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~-~~~~~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI-PQYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCC--EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc-CccCC-CCCCCEEEcCCCcCC--ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 477888777776 65433 345678888877665 34 34456778888888888888776655 67788888888888
Q ss_pred CCCCCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 167 CSELQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 167 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
+|.+.. +..+.++++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++.++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence 888766 45577888888888888877766 4557778888888888776 55554444677777777777633
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=2.9e-14 Score=137.89 Aligned_cols=175 Identities=17% Similarity=0.109 Sum_probs=140.8
Q ss_pred cccCcccEEEeecCCCcccCCC-----ccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc---ccc--
Q 040303 83 GALKFYTSIVLHDSKMNVLLPE-----VLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL---LPS-- 152 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~-----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~---lp~-- 152 (552)
...+++++|++++|.+....+. ...+++|++|++++|... .++...|..+++|++|++++|.+.. ++.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP--AFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC--CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc--hhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 4578899999999998864432 126899999999999875 6666667899999999999998653 433
Q ss_pred hhcCCCCCcEEEccCCCCCC-hh----hhcCCCCccEEEecCCcCccc-chhhccC---CCCCEEeccCCCCCCccCccc
Q 040303 153 SLGLLTNLRTLCLYCSELQD-IA----VIGELKNLEILCLRGSYIEQL-PVEIGQL---TRLRSLDLRDCDRLQVIPPNV 223 (552)
Q Consensus 153 ~i~~l~~L~~L~l~~~~~~~-~~----~i~~L~~L~~L~l~~~~l~~l-p~~i~~l---~~L~~L~l~~~~~~~~~~~~~ 223 (552)
.++.+++|++|++++|.++. +. .++++++|++|++++|.+..+ |..+..+ ++|++|++++|. +..+|..
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~- 269 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG- 269 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC-
T ss_pred hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh-
Confidence 34789999999999999987 33 357899999999999999876 8777777 699999999988 7788886
Q ss_pred ccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCC
Q 040303 224 LSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVN 275 (552)
Q Consensus 224 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 275 (552)
+. ++|++|+++++... ....+..+++|+.|++++|.+.
T Consensus 270 ~~--~~L~~L~Ls~N~l~------------~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 270 LP--AKLRVLDLSSNRLN------------RAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CC--SCCSCEECCSCCCC------------SCCCTTSCCCCSCEECSSTTTS
T ss_pred hc--CCCCEEECCCCcCC------------CCchhhhCCCccEEECcCCCCC
Confidence 43 89999999865441 1133678899999999999865
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.6e-15 Score=151.60 Aligned_cols=185 Identities=18% Similarity=0.126 Sum_probs=124.4
Q ss_pred cCcccEEEeecCCCccc----CCC-ccCCCCceEEEeecCCCC--CcccChhH------hhCCCCccEEEeecccccc--
Q 040303 85 LKFYTSIVLHDSKMNVL----LPE-VLECPQLQLLSLWTEKSS--LITLPDNF------FRKLTQVRVLDLTYMHLSL-- 149 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~----~~~-~~~~~~Lr~L~l~~~~~~--~~~~~~~~------~~~l~~Lr~L~l~~~~~~~-- 149 (552)
.+++++|++++|.+... ++. +..+++|++|++++|... ...+|..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 46688888888877652 111 236888888888876432 11334433 3678888889888888765
Q ss_pred ---ccchhcCCCCCcEEEccCCCCCC--hhh----hcCC---------CCccEEEecCCcCc--ccc---hhhccCCCCC
Q 040303 150 ---LPSSLGLLTNLRTLCLYCSELQD--IAV----IGEL---------KNLEILCLRGSYIE--QLP---VEIGQLTRLR 206 (552)
Q Consensus 150 ---lp~~i~~l~~L~~L~l~~~~~~~--~~~----i~~L---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~ 206 (552)
+|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 77788888888999888888764 333 3334 88888888888775 444 4567788888
Q ss_pred EEeccCCCCCCc-----cCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCc
Q 040303 207 SLDLRDCDRLQV-----IPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNT 276 (552)
Q Consensus 207 ~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 276 (552)
+|++++|. +.. +.+..+..+++|++|+++++.... . ........+..+++|+.|++++|.+..
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-~-----g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-L-----GSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-H-----HHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-H-----HHHHHHHHHccCCCcCEEECCCCCCch
Confidence 88888876 441 222126788888888887544310 0 011234567788888888888877543
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=4.4e-14 Score=132.81 Aligned_cols=146 Identities=24% Similarity=0.288 Sum_probs=128.0
Q ss_pred cccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcE
Q 040303 83 GALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRT 162 (552)
Q Consensus 83 ~~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 162 (552)
...+++++|+++++.+.. ++....+++|+.|++++|... .++. +.++++|++|++++|.++.+|.... .+|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~L~~N~i~--~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQIS--DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCC--CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhcCcCcEEECcCCCccc-chHHhhCCCCCEEECCCCccC--CChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 457889999999999987 776668999999999999766 5666 6899999999999999998876444 99999
Q ss_pred EEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccc
Q 040303 163 LCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFN 239 (552)
Q Consensus 163 L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (552)
|++++|.+..++.+.++++|++|++++|+++.+| .+..+++|++|++++|. +..++ . +..+++|+.|+++++.
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~-~-l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG-G-LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT-T-STTCCCCCEEEEEEEE
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH-H-hccCCCCCEEeCCCCc
Confidence 9999999998778999999999999999999986 79999999999999987 66663 3 8999999999998554
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.4e-13 Score=142.82 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=138.6
Q ss_pred CcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEc
Q 040303 86 KFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCL 165 (552)
Q Consensus 86 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l 165 (552)
.+++.|+++++.+.. +|... .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.+ +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~--~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI--SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS--CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc--ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 378899999999887 77644 488999999998766 677 357899999999999988888 665 9999999
Q ss_pred cCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhh
Q 040303 166 YCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVE 244 (552)
Q Consensus 166 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (552)
++|.+.. |. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. ++ ++|+.|+++++....
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~-- 194 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES-- 194 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS--
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc--
Confidence 9999887 44 78999999999999998886 67899999999987 677887 45 899999998554311
Q ss_pred hhhhcccccChhhhcCCCCC-------cEEEccCCCCCcCCCcc-cccCCceEEEEecc
Q 040303 245 VEAAGVKNASLEELKRLPNL-------TTLELCIPDVNTLPKGL-FFEKLERYRICIGR 295 (552)
Q Consensus 245 ~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~p~~~-~l~~L~~L~l~~~~ 295 (552)
.+. +.. +| +.|++++|.+..+|..+ .+++|+.|.++++.
T Consensus 195 ---------lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 195 ---------LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ---------CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred ---------hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 111 222 55 99999999999999876 78888888886654
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=6e-14 Score=127.13 Aligned_cols=143 Identities=27% Similarity=0.307 Sum_probs=121.9
Q ss_pred ccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~ 161 (552)
..+++++|+++++.+....+..+ .+++|++|++.+|... .++...|..+++|++|++++|.+..+|.. ++++++|+
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 46789999999999987344444 8999999999998766 78888789999999999999999988765 68999999
Q ss_pred EEEccCCCCCC-h-hhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 162 TLCLYCSELQD-I-AVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 162 ~L~l~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
+|++++|.+.. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++|.. .+.+++|+.|++.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEW 173 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHH
Confidence 99999999887 4 4589999999999999999988876 78899999999998742 3566778888765
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1e-13 Score=126.63 Aligned_cols=147 Identities=17% Similarity=0.281 Sum_probs=106.8
Q ss_pred eEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEec
Q 040303 112 QLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLR 188 (552)
Q Consensus 112 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~ 188 (552)
+.+++.++... .+|..+ .+.|++|++++|.+..+|. .+..+++|++|++++|.+.. |..+.++++|++|+++
T Consensus 14 ~~v~c~~~~l~--~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT--EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS--SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC--cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 45666665544 677654 2678888888888887765 67888888888888888776 5778888888888888
Q ss_pred CCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEE
Q 040303 189 GSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTL 267 (552)
Q Consensus 189 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 267 (552)
+|.++.+|.. +..+++|++|++++|. +..+++..+..+++|+.|+++++.. .......+..+++|+.|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l----------~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL----------QTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC----------SCCCTTTTTTCTTCCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC----------CEECHHHHhCCCCCCEE
Confidence 8888888776 4678888888888877 6666555577888888888874433 11122346677777888
Q ss_pred EccCCCC
Q 040303 268 ELCIPDV 274 (552)
Q Consensus 268 ~l~~~~~ 274 (552)
++++|.+
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 8777653
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=5.9e-15 Score=146.03 Aligned_cols=174 Identities=18% Similarity=0.158 Sum_probs=96.0
Q ss_pred EeecCCCcccCCCccCCC-CceEEEeecCCCCCcccCh----hHhhCCC-CccEEEeeccccccc-cchhcCC-----CC
Q 040303 92 VLHDSKMNVLLPEVLECP-QLQLLSLWTEKSSLITLPD----NFFRKLT-QVRVLDLTYMHLSLL-PSSLGLL-----TN 159 (552)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~~~~l-p~~i~~l-----~~ 159 (552)
.++.+.+.+.+|.+...+ +|+.|++++|... ..+. ..+.+++ +|++|++++|.+... +..+..+ ++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG--GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCC--hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 455566655455544333 4777777776644 4443 4456666 777777777776543 3444443 77
Q ss_pred CcEEEccCCCCCC--hhh----hcCC-CCccEEEecCCcCcccchh-----hcc-CCCCCEEeccCCCCCC-----ccCc
Q 040303 160 LRTLCLYCSELQD--IAV----IGEL-KNLEILCLRGSYIEQLPVE-----IGQ-LTRLRSLDLRDCDRLQ-----VIPP 221 (552)
Q Consensus 160 L~~L~l~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~~lp~~-----i~~-l~~L~~L~l~~~~~~~-----~~~~ 221 (552)
|++|++++|.+.. +.. +..+ ++|++|++++|.+...+.. +.. .++|++|++++|. ++ .++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHH
Confidence 7777777777654 332 3344 6777777777776654431 223 2577777777765 33 2222
Q ss_pred ccccCCC-CCcEEEccccccchhhhhhhcccccChhhhcCC-CCCcEEEccCCCCC
Q 040303 222 NVLSNLS-HLEELYIRSFNKWEVEVEAAGVKNASLEELKRL-PNLTTLELCIPDVN 275 (552)
Q Consensus 222 ~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~ 275 (552)
. +..++ +|++|+++++..... ........+... ++|+.|++++|.+.
T Consensus 161 ~-l~~~~~~L~~L~Ls~n~l~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 161 I-LAAIPANVNSLNLRGNNLASK------NCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp H-HHTSCTTCCEEECTTSCGGGS------CHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred H-HhcCCccccEeeecCCCCchh------hHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 2 34444 677777764432100 000112234444 37777777766544
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1e-15 Score=153.11 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=37.1
Q ss_pred ccCCCcccccccceeeeEeccCCCCccc--cccCcceEEEEecCCCccc-----cccchhHhhhcccceEEEecCC
Q 040303 407 GGLPNLETLELYNVNVERIWKSQLPAMS--CGIQTLTRLIVYGCGELRC-----LFSSSIVNSFIRLQHLEIDECP 475 (552)
Q Consensus 407 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~--~~l~~L~~L~i~~C~~L~~-----lp~~~~~~~l~~L~~L~i~~c~ 475 (552)
..+++|+.|++++|.+........+... +.+++|++|++++| .+.. +|. ....++++|++|++.+|+
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKT-VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHH-HHHHHCTTCCEEECTTSB
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHH-HHHhcCCCceEEEccCCc
Confidence 4567777777777765432110000000 12677778887775 3444 543 122556777888777765
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.9e-13 Score=124.77 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=112.3
Q ss_pred eEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc--hhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEe
Q 040303 112 QLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS--SLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCL 187 (552)
Q Consensus 112 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l 187 (552)
++++++++... .+|..+ ...+++|++++|.+..++. .++.+++|++|++++|.+.. +..+.++.+|++|++
T Consensus 14 ~~l~~s~n~l~--~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN--KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS--SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc--cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 47788777654 677654 3457899999998887743 47889999999999998887 457889999999999
Q ss_pred cCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcE
Q 040303 188 RGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTT 266 (552)
Q Consensus 188 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 266 (552)
++|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|+++++.. .......+..+++|+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l----------~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQI----------TTVAPGAFDTLHSLST 157 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCC----------CCBCTTTTTTCTTCCE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcC----------CEECHHHhcCCCCCCE
Confidence 99988877765 7889999999999887 6666544478888899888875443 1123456778888888
Q ss_pred EEccCCCC
Q 040303 267 LELCIPDV 274 (552)
Q Consensus 267 L~l~~~~~ 274 (552)
|++++|.+
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 88887764
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=2e-13 Score=125.60 Aligned_cols=136 Identities=28% Similarity=0.382 Sum_probs=118.7
Q ss_pred cccccCccccCcccEEEeecCCCcccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-
Q 040303 76 SREWLDEGALKFYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS- 153 (552)
Q Consensus 76 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~- 153 (552)
...++. ....++++|++++|.+....+..+ .+++|+.|++++|... .+|...|..+++|++|++++|.+..+|..
T Consensus 31 l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 344443 356889999999999998555554 8999999999999875 78888889999999999999999988765
Q ss_pred hcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCC
Q 040303 154 LGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCD 214 (552)
Q Consensus 154 i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (552)
+..+.+|++|++++|.+.. |..+.++++|++|++++|.+..+|.. +..+++|++|++.+|.
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 6899999999999999988 88999999999999999999988864 7889999999999986
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=1e-13 Score=136.95 Aligned_cols=143 Identities=23% Similarity=0.312 Sum_probs=86.1
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhh-CCCCccEEEeeccccccccc-hhcCCCCCcEEEcc
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFR-KLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLY 166 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~ 166 (552)
+.++++++.+.. +|... .+.++.|++++|.+. .++...|. ++++|++|++++|.+..++. .+.++++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 456666666655 55322 234666777766554 45555555 66677777777776666553 46667777777777
Q ss_pred CCCCCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCCCCCCccCcccc---cCCCCCcEEEcc
Q 040303 167 CSELQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDCDRLQVIPPNVL---SNLSHLEELYIR 236 (552)
Q Consensus 167 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~ 236 (552)
+|.+.. +..+.++.+|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|+.|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECC
Confidence 766665 34566667777777777666654 3456666677777776665 555655433 345555555554
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=1e-13 Score=120.99 Aligned_cols=139 Identities=23% Similarity=0.213 Sum_probs=86.5
Q ss_pred CCCccEEEeeccccc--cccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcc-cchhhccCCCCCEEec
Q 040303 134 LTQVRVLDLTYMHLS--LLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQ-LPVEIGQLTRLRSLDL 210 (552)
Q Consensus 134 l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 210 (552)
.++|++|++++|.+. .+|..+..+++|++|++++|.+.....+..+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 456677777777666 6666666777777777777766655666667777777777776665 5555556777777777
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCc
Q 040303 211 RDCDRLQVIPP-NVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKG 280 (552)
Q Consensus 211 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~ 280 (552)
++|. +..++. ..++.+++|++|+++++..... .......+..+++|+.|+++.|....+|..
T Consensus 103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNL-------NDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTS-------TTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcch-------HHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 7765 555542 2256777777777764432100 000013566777777777777776666543
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=6.4e-14 Score=138.42 Aligned_cols=159 Identities=23% Similarity=0.310 Sum_probs=132.1
Q ss_pred cccccCccccCcccEEEeecCCCcccCCCcc--CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-
Q 040303 76 SREWLDEGALKFYTSIVLHDSKMNVLLPEVL--ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS- 152 (552)
Q Consensus 76 ~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~- 152 (552)
...+|. .....++.|++++|.+....+..+ .+++|++|++++|.+. .++...|.++++|++|++++|.+..+|.
T Consensus 30 l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 30 LPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp CSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred cCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC--ccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 344443 356679999999999988444444 7999999999999776 6777777999999999999999998766
Q ss_pred hhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchhh----ccCCCCCEEeccCCCCCCccCcccccC
Q 040303 153 SLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVEI----GQLTRLRSLDLRDCDRLQVIPPNVLSN 226 (552)
Q Consensus 153 ~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~~~~~~~~~l~~ 226 (552)
.+..+.+|++|++++|.+.. +..+.++++|++|++++|.++.+|..+ ..+++|++|++++|. +..+|...+..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 185 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQK 185 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhh
Confidence 58999999999999999887 678999999999999999999999876 679999999999987 78888765777
Q ss_pred CCCC--cEEEcccc
Q 040303 227 LSHL--EELYIRSF 238 (552)
Q Consensus 227 l~~L--~~L~l~~~ 238 (552)
++.+ +.|++.++
T Consensus 186 l~~~~l~~l~l~~N 199 (361)
T 2xot_A 186 LPAWVKNGLYLHNN 199 (361)
T ss_dssp SCHHHHTTEECCSS
T ss_pred ccHhhcceEEecCC
Confidence 7763 77888743
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=1.1e-13 Score=120.72 Aligned_cols=133 Identities=25% Similarity=0.212 Sum_probs=105.6
Q ss_pred ccCcccEEEeecCCCc-ccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc-ccchhcCCCCC
Q 040303 84 ALKFYTSIVLHDSKMN-VLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL-LPSSLGLLTNL 160 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~-~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L 160 (552)
.++++++|+++++.+. +.+|..+ .+++|++|++++|... .+ ..+..+++|++|++++|.+.. +|..++.+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~--~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC--CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC--Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 3577899999999887 3367664 7888999999988765 34 335788899999999998876 77777778999
Q ss_pred cEEEccCCCCCC-h--hhhcCCCCccEEEecCCcCcccch----hhccCCCCCEEeccCCCCCCccCc
Q 040303 161 RTLCLYCSELQD-I--AVIGELKNLEILCLRGSYIEQLPV----EIGQLTRLRSLDLRDCDRLQVIPP 221 (552)
Q Consensus 161 ~~L~l~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~~~ 221 (552)
++|++++|.+.. + ..+.++++|++|++++|.+..+|. .+..+++|++|++++|. ..++|.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 999999988877 4 678888899999998888888776 67888889999888876 555554
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=2.8e-13 Score=115.51 Aligned_cols=123 Identities=24% Similarity=0.220 Sum_probs=85.4
Q ss_pred cCcccEEEeecCCCc-ccCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc-ccchhcCCCCCc
Q 040303 85 LKFYTSIVLHDSKMN-VLLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL-LPSSLGLLTNLR 161 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~-~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~ 161 (552)
.+++++|+++++.+. +.+|..+ .+++|++|++++|... .+ ..+..+++|++|++++|.+.. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC--CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC--Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 467888888888877 3366543 6777777777777554 33 234677777777777777765 666666677777
Q ss_pred EEEccCCCCCC-h--hhhcCCCCccEEEecCCcCcccch----hhccCCCCCEEecc
Q 040303 162 TLCLYCSELQD-I--AVIGELKNLEILCLRGSYIEQLPV----EIGQLTRLRSLDLR 211 (552)
Q Consensus 162 ~L~l~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~ 211 (552)
+|++++|.+.. + ..++.+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777766 3 667777777777777777776664 46667777777654
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.2e-13 Score=117.84 Aligned_cols=124 Identities=24% Similarity=0.292 Sum_probs=73.7
Q ss_pred CCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEE
Q 040303 109 PQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILC 186 (552)
Q Consensus 109 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~ 186 (552)
++++.|++++|......+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. |..++++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 556666666665431244543 35666666666666666655 556666666666666666554 34455566666666
Q ss_pred ecCCcCcccc--hhhccCCCCCEEeccCCCCCCccCc---ccccCCCCCcEEEc
Q 040303 187 LRGSYIEQLP--VEIGQLTRLRSLDLRDCDRLQVIPP---NVLSNLSHLEELYI 235 (552)
Q Consensus 187 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l 235 (552)
+++|.++.+| ..++.+++|++|++++|. +..++. ..++.+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 6666666544 556666666666666664 444444 23556666666654
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=6.7e-14 Score=138.42 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=131.5
Q ss_pred ccCcccEEEeecCCCcccCC----Ccc-CCC-CceEEEeecCCCCCcccChhHhhCC-----CCccEEEeeccccccccc
Q 040303 84 ALKFYTSIVLHDSKMNVLLP----EVL-ECP-QLQLLSLWTEKSSLITLPDNFFRKL-----TQVRVLDLTYMHLSLLPS 152 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~----~~~-~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~lp~ 152 (552)
..+++++|++++|.+....+ ..+ .++ +|++|++++|... ......+..+ ++|++|++++|.+...+.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG--GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC--HHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 34569999999999887332 233 677 8999999999765 3333333443 999999999999875433
Q ss_pred -h----hcCC-CCCcEEEccCCCCCC--hhh----hcCC-CCccEEEecCCcCc-----ccchhhccCC-CCCEEeccCC
Q 040303 153 -S----LGLL-TNLRTLCLYCSELQD--IAV----IGEL-KNLEILCLRGSYIE-----QLPVEIGQLT-RLRSLDLRDC 213 (552)
Q Consensus 153 -~----i~~l-~~L~~L~l~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~ 213 (552)
. +..+ ++|++|++++|.+.. +.. +..+ .+|++|++++|.+. .++..+..+. +|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 2 5555 899999999999876 333 4443 69999999999887 5556667776 9999999998
Q ss_pred CCCCccCccc----ccCC-CCCcEEEccccccchhhhhhhcccccChhhhcC-CCCCcEEEccCCCCCcCC
Q 040303 214 DRLQVIPPNV----LSNL-SHLEELYIRSFNKWEVEVEAAGVKNASLEELKR-LPNLTTLELCIPDVNTLP 278 (552)
Q Consensus 214 ~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~p 278 (552)
. +....... +..+ ++|++|+++++..... ........+.. .++|+.|++++|.+...+
T Consensus 178 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 178 N-LASKNCAELAKFLASIPASVTSLDLSANLLGLK------SYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS------CHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred C-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChh------HHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 7 55544321 3455 5999999985543110 01112344555 359999999999876654
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=2.2e-12 Score=133.72 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=132.4
Q ss_pred ccCcccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEE
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTL 163 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 163 (552)
..+++++|++++|.+.. +| ..+++|++|++++|.+. .+|. + .+ +|++|++++|.++.+|. .+++|++|
T Consensus 78 l~~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~--~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 78 LPPQITVLEITQNALIS-LP--ELPASLEYLDACDNRLS--TLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYI 145 (571)
T ss_dssp CCTTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS--CCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred HcCCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCC--Ccch-h-hc--CCCEEECCCCcCCCCCC---cCccccEE
Confidence 35789999999999986 77 55799999999999776 5777 4 44 99999999999999988 78999999
Q ss_pred EccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCC-------cEEEc
Q 040303 164 CLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHL-------EELYI 235 (552)
Q Consensus 164 ~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-------~~L~l 235 (552)
++++|.+.. |. .+++|++|++++|.++.+|. +. ++|++|++++|. +..+|. +.. +| +.|++
T Consensus 146 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 146 NADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEEC
T ss_pred eCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEec
Confidence 999999988 54 68899999999999999998 66 899999999987 778887 444 67 99999
Q ss_pred cccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCc
Q 040303 236 RSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNT 276 (552)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 276 (552)
+++.. ...+..+..+++|+.|++++|.+..
T Consensus 215 s~N~l-----------~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 215 RENRI-----------THIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CSSCC-----------CCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCcc-----------eecCHHHhcCCCCCEEEeeCCcCCC
Confidence 86543 1255667789999999999998643
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=6e-13 Score=143.11 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=98.5
Q ss_pred cCcccEEEeecCCCcccCCCccCCCCceEEEeecCCC---CCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCc
Q 040303 85 LKFYTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKS---SLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLR 161 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~---~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 161 (552)
..++++|++.++.+...........+|+.+.+..... .. .++.+.|..+..|++|+|++|.+..+|..+.++++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 4567888988887766222333444555544433211 11 3455667899999999999999999999999999999
Q ss_pred EEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccc
Q 040303 162 TLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFN 239 (552)
Q Consensus 162 ~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (552)
+|+|++|.+.. |..|++|.+|++|+|++|.++.+|..+++|++|++|++++|. ++.+|.. ++++++|++|+++++.
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCc
Confidence 99999999888 888999999999999999999999999999999999999987 7899988 8999999999998554
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=7.8e-13 Score=116.23 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=61.4
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhh-hcCCCCccE
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAV-IGELKNLEI 184 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~-i~~L~~L~~ 184 (552)
.+++|+.|++++|... .++. +....++|++|++++|.+..+ ..++.+++|++|++++|.+.. |+. +..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3444555555544333 2322 212222555555555555544 345555555555555555554 322 255555555
Q ss_pred EEecCCcCcccch--hhccCCCCCEEeccCCCCCCccCcc---cccCCCCCcEEEcc
Q 040303 185 LCLRGSYIEQLPV--EIGQLTRLRSLDLRDCDRLQVIPPN---VLSNLSHLEELYIR 236 (552)
Q Consensus 185 L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~ 236 (552)
|++++|.+..+|. .+..+++|++|++++|. +..+|.. .++.+++|+.|++.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCC
Confidence 5555555555554 45555555555555554 3344432 24555555555554
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=8.1e-13 Score=116.12 Aligned_cols=126 Identities=18% Similarity=0.219 Sum_probs=110.2
Q ss_pred ccCcccEEEeecCCCcccCCCccCCC-CceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchh-cCCCCCc
Q 040303 84 ALKFYTSIVLHDSKMNVLLPEVLECP-QLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSL-GLLTNLR 161 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~l~~L~ 161 (552)
...+++.|++++|.+.. ++....+. +|++|++++|... .++ .+..+++|++|++++|.+..+|..+ +.+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~--~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC--EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCC--ccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 46789999999999987 67666554 9999999999776 442 3589999999999999999988765 8999999
Q ss_pred EEEccCCCCCC-hh--hhcCCCCccEEEecCCcCcccchh----hccCCCCCEEeccCCC
Q 040303 162 TLCLYCSELQD-IA--VIGELKNLEILCLRGSYIEQLPVE----IGQLTRLRSLDLRDCD 214 (552)
Q Consensus 162 ~L~l~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~ 214 (552)
+|++++|.+.. |. .+.++++|++|++++|.+..+|.. ++.+++|++|+++.|.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999987 54 799999999999999999999885 8999999999998876
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=2.4e-12 Score=114.68 Aligned_cols=101 Identities=25% Similarity=0.338 Sum_probs=65.5
Q ss_pred CCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccch-hhccCCCCCEEecc
Q 040303 135 TQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPV-EIGQLTRLRSLDLR 211 (552)
Q Consensus 135 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 211 (552)
+.|++|++++|.+..+|..+.++.+|++|++++|.+.. +..+.++++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 45666666666666666666666677777776666665 3456666777777777766665554 36666677777776
Q ss_pred CCCCCCccCcccccCCCCCcEEEcc
Q 040303 212 DCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 212 ~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
+|. +..+|...+..+++|+.|++.
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCC-CCeeChhhhhcCccccEEEeC
Confidence 665 556665545666666666665
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.7e-12 Score=114.47 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=50.5
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccCh-hHhhCCCCccEEEeeccccccc-cchhcCCCCCcEEEcc
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPD-NFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLY 166 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~ 166 (552)
++++++++.+.. +|... ..++++|++.+|.+. .++. .+|..+++|++|++++|.++.+ |..++++++|++|+++
T Consensus 11 ~~l~~s~~~l~~-ip~~~-~~~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDI-PLHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSS-CCSCC-CTTCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCc-CccCC-CCCCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 445555555543 33322 124444444444332 2222 1234444444444444444433 3344444444444444
Q ss_pred CCCCCC--hhhhcCCCCccEEEecCCcCccc-chhhccCCCCCEEeccCC
Q 040303 167 CSELQD--IAVIGELKNLEILCLRGSYIEQL-PVEIGQLTRLRSLDLRDC 213 (552)
Q Consensus 167 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 213 (552)
+|.+.. +..+.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 444443 22344444444444444444422 333444444444444443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=6e-12 Score=112.17 Aligned_cols=119 Identities=19% Similarity=0.247 Sum_probs=71.7
Q ss_pred eEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch--hcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEe
Q 040303 112 QLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS--LGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCL 187 (552)
Q Consensus 112 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l 187 (552)
++++++++... .+|..++ .+|++|++++|.+..++.. ++.+++|++|++++|.+.. |..+.++++|++|++
T Consensus 11 ~~l~~s~~~l~--~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK--EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS--SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC--cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 45666665543 5665442 2666777777766666543 6666777777777666655 456666667777777
Q ss_pred cCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 188 RGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 188 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
++|+++.++.. +..+++|++|++++|. +..+++..++.+++|++|++.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECT
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeC
Confidence 66666655443 5666666666666665 444433335566666666655
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.5e-11 Score=109.58 Aligned_cols=121 Identities=24% Similarity=0.339 Sum_probs=104.7
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~ 167 (552)
++++++++.+.. +|... .++|++|++.+|.+. .+|.. |.++++|++|++++|.++.++. .+.++++|++|++++
T Consensus 13 ~~l~~~~~~l~~-ip~~~-~~~l~~L~L~~n~i~--~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI-PRDVTELYLDGNQFT--LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSS-CCSCC-CTTCCEEECCSSCCC--SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCc-CCCCC-CCCCCEEECCCCcCc--hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 578888888877 66543 468999999999876 78854 5899999999999999988764 689999999999999
Q ss_pred CCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCC
Q 040303 168 SELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCD 214 (552)
Q Consensus 168 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (552)
|.+.. +..+.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 99887 56799999999999999999999875 7889999999999876
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.6e-11 Score=107.92 Aligned_cols=122 Identities=29% Similarity=0.360 Sum_probs=76.2
Q ss_pred cEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCcEEEccC
Q 040303 89 TSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLRTLCLYC 167 (552)
Q Consensus 89 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~ 167 (552)
+.+++.++.+.. +|.. ..++|+.|+++++... .++...|..+++|++|++++|.+..+|.. ++.+++|++|++++
T Consensus 10 ~~l~~~~~~l~~-~p~~-~~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTG-IPSSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSS-CCTT-CCTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCcc-CCCC-CCCCCcEEEeCCCccc--EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456666666655 4422 2356777777766544 55555556677777777777766666544 46667777777777
Q ss_pred CCCCC-h-hhhcCCCCccEEEecCCcCcccchhh-ccCCCCCEEeccCCC
Q 040303 168 SELQD-I-AVIGELKNLEILCLRGSYIEQLPVEI-GQLTRLRSLDLRDCD 214 (552)
Q Consensus 168 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~ 214 (552)
|.+.. + ..+.++++|++|++++|.++.+|..+ ..+++|++|++++|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 66665 3 34566667777777666666666553 556666666666654
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=7.7e-12 Score=130.32 Aligned_cols=123 Identities=24% Similarity=0.259 Sum_probs=99.2
Q ss_pred CccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCC
Q 040303 136 QVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCD 214 (552)
Q Consensus 136 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 214 (552)
.|++|++++|.++.+|. ++.+++|++|++++|.+.. |..++++++|++|++++|.++.+| .++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58999999999988887 9999999999999999888 889999999999999999999988 89999999999999987
Q ss_pred CCCcc--CcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEc
Q 040303 215 RLQVI--PPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLEL 269 (552)
Q Consensus 215 ~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 269 (552)
+..+ |.. ++.+++|+.|+++++.... ........+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~-------~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQ-------EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGG-------SSSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCC-------CccHHHHHHHHCcccCccCC
Confidence 6666 555 8999999999998554311 11112233455788888864
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=4e-12 Score=136.68 Aligned_cols=112 Identities=24% Similarity=0.262 Sum_probs=102.2
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEE
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEIL 185 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L 185 (552)
.++.|++|++++|... .+|..++ ++++|++|+|++|.+..+|..+++|++|++|+|++|.+.. |..|++|.+|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~--~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF--NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS--CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC--CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 7899999999998876 7888874 8999999999999999999999999999999999999888 8899999999999
Q ss_pred EecCCcCcccchhhccCCCCCEEeccCCCCCCccCc
Q 040303 186 CLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPP 221 (552)
Q Consensus 186 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 221 (552)
++++|.+..+|.+++++++|++|++++|...+.+|.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 999999999999999999999999999984444443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=4.4e-11 Score=105.05 Aligned_cols=121 Identities=24% Similarity=0.418 Sum_probs=82.3
Q ss_pred eEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCcEEEccCCCCCC-h-hhhcCCCCccEEEec
Q 040303 112 QLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLRTLCLYCSELQD-I-AVIGELKNLEILCLR 188 (552)
Q Consensus 112 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~-~~i~~L~~L~~L~l~ 188 (552)
+.+++.++... .+|..+ .++|++|++++|.+..+|.. ++.+++|++|++++|.+.. + ..+.++++|++|+++
T Consensus 10 ~~l~~~~~~l~--~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLT--SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCS--SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCc--cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 45666655443 566533 36778888888777766654 5777788888888777766 3 446777788888887
Q ss_pred CCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcccc
Q 040303 189 GSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSF 238 (552)
Q Consensus 189 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (552)
+|.++.+|.. +..+++|++|++++|. +..+|...+..+++|++|+++++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 7777776654 5677777888777765 56666654566777777776633
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=2e-11 Score=127.19 Aligned_cols=190 Identities=20% Similarity=0.217 Sum_probs=135.9
Q ss_pred cccEEEeecCCCcccCCCcc-CCCCceEEEeecCCC-----------CCcccChhHhhCCCCccEEE-eeccccccccc-
Q 040303 87 FYTSIVLHDSKMNVLLPEVL-ECPQLQLLSLWTEKS-----------SLITLPDNFFRKLTQVRVLD-LTYMHLSLLPS- 152 (552)
Q Consensus 87 ~lr~L~l~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~-----------~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp~- 152 (552)
++++|++++|.+.. +|... .+++|+.|++.++.. .....++..++.+++|+.|+ ++.+.+..++.
T Consensus 350 ~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 34445555555443 44322 555666665533310 01123334457888899998 66654443332
Q ss_pred -----hhcC--CCCCcEEEccCCCCCChhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCccccc
Q 040303 153 -----SLGL--LTNLRTLCLYCSELQDIAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLS 225 (552)
Q Consensus 153 -----~i~~--l~~L~~L~l~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~ 225 (552)
.+.. ...|++|++++|.+...+.++++++|++|++++|.++.+|..++++++|++|++++|. +..+| . ++
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~ 505 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VA 505 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GT
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cC
Confidence 1211 1369999999999988434999999999999999999999999999999999999987 77788 4 89
Q ss_pred CCCCCcEEEccccccchhhhhhhcccccC-hhhhcCCCCCcEEEccCCCCCcCCCcc-----cccCCceEE
Q 040303 226 NLSHLEELYIRSFNKWEVEVEAAGVKNAS-LEELKRLPNLTTLELCIPDVNTLPKGL-----FFEKLERYR 290 (552)
Q Consensus 226 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~~~-----~l~~L~~L~ 290 (552)
.+++|++|+++++.. .... +..++.+++|+.|++++|.+..+|... .+++|+.|.
T Consensus 506 ~l~~L~~L~Ls~N~l----------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 506 NLPRLQELLLCNNRL----------QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCSSCCEEECCSSCC----------CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcEEECCCCCC----------CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999999999985543 1112 678999999999999999988887654 377888774
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=2.1e-13 Score=122.46 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=47.4
Q ss_pred hCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchhhccCCCCCEEec
Q 040303 132 RKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVEIGQLTRLRSLDL 210 (552)
Q Consensus 132 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (552)
..+++|++|++++|.+..+| .++.+++|++|++++|.+.. |..+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 44455555555555444444 44444555555555544444 333444444555555555444443 3444445555555
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEcc
Q 040303 211 RDCDRLQVIPP-NVLSNLSHLEELYIR 236 (552)
Q Consensus 211 ~~~~~~~~~~~-~~l~~l~~L~~L~l~ 236 (552)
++|. +..++. ..+..+++|++|++.
T Consensus 123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 123 SNNK-ITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp SEEE-CCCHHHHHHHTTTTTCSEEEEC
T ss_pred CCCc-CCchhHHHHHhcCCCCCEEEec
Confidence 4443 333322 113444555555544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=1e-13 Score=124.42 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=104.7
Q ss_pred cCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccchhcCCCCCcEEEccCCCCCChhhhcCCCCccEE
Q 040303 106 LECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQDIAVIGELKNLEIL 185 (552)
Q Consensus 106 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~~L~~L 185 (552)
..+++|++|++++|... .+| . +.++++|++|++++|.+..+|..++.+++|++|++++|.+..++.+.++++|++|
T Consensus 45 ~~l~~L~~L~ls~n~l~--~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIE--KIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEES--CCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE
T ss_pred hcCCCCCEEECCCCCCc--ccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEE
Confidence 37899999999998765 577 3 5889999999999999999999888899999999999999985579999999999
Q ss_pred EecCCcCcccch--hhccCCCCCEEeccCCCCCCccCc---------ccccCCCCCcEEE
Q 040303 186 CLRGSYIEQLPV--EIGQLTRLRSLDLRDCDRLQVIPP---------NVLSNLSHLEELY 234 (552)
Q Consensus 186 ~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~---------~~l~~l~~L~~L~ 234 (552)
++++|.+..+|. .+..+++|++|++++|......|. ..+..+++|+.|+
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999998765 689999999999999873222221 2256778888877
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.7e-10 Score=100.80 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=37.6
Q ss_pred CCccEEEeeccccccc-cchhcCCCCCcEEEccCCCCCC-hh-hhcCCCCccEEEecCCcCcccchh-hccCCCCCEEec
Q 040303 135 TQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYCSELQD-IA-VIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDL 210 (552)
Q Consensus 135 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 210 (552)
++|++|++++|.+..+ |..++++++|++|++++|.+.. |. .+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4455555555554443 3334445555555555554444 22 234445555555555544444443 444444555544
Q ss_pred cCCC
Q 040303 211 RDCD 214 (552)
Q Consensus 211 ~~~~ 214 (552)
++|.
T Consensus 113 ~~N~ 116 (174)
T 2r9u_A 113 YNNP 116 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 4443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.9e-10 Score=100.05 Aligned_cols=96 Identities=27% Similarity=0.444 Sum_probs=53.6
Q ss_pred cEEEeeccccccccchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCC
Q 040303 138 RVLDLTYMHLSLLPSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCD 214 (552)
Q Consensus 138 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 214 (552)
++++++++.++.+|..+. .+|++|++++|.+.. +..+.++.+|++|++++|+++.+|.. +.++++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 455566655555555442 556666666665554 34455666666666666666555554 3556666666666554
Q ss_pred CCCccCcccccCCCCCcEEEcc
Q 040303 215 RLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
+..++...+..+++|+.|+++
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 90 -LKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECC
T ss_pred -cCEeCHHHhcCCCCCCEEEeC
Confidence 445554434555555555554
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=3.2e-10 Score=99.02 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=92.8
Q ss_pred ccEEEeecCCCcccCCCccCCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccch-hcCCCCCcEEEcc
Q 040303 88 YTSIVLHDSKMNVLLPEVLECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPSS-LGLLTNLRTLCLY 166 (552)
Q Consensus 88 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 166 (552)
.+.++++++.+.. +|... .++|+.|++++|.+. .++...|.++++|++|++++|.+..+|.. ++++++|++|+++
T Consensus 14 ~~~l~~~~n~l~~-iP~~~-~~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGI-PTDKQRLWLNNNQIT--KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCc-cCCCc-CCCCcEEEeCCCCcc--ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3678999888877 77544 389999999999876 67666679999999999999999999876 5899999999999
Q ss_pred CCCCCC-hh-hhcCCCCccEEEecCCcCcccchhhcc
Q 040303 167 CSELQD-IA-VIGELKNLEILCLRGSYIEQLPVEIGQ 201 (552)
Q Consensus 167 ~~~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp~~i~~ 201 (552)
+|.+.. |. .+.++++|++|++++|.+...|..+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccccHHH
Confidence 999988 54 599999999999999988877665443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=1e-09 Score=95.43 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=46.7
Q ss_pred CCccEEEeeccccccc-cchhcCCCCCcEEEccCCCCCC-h-hhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEec
Q 040303 135 TQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYCSELQD-I-AVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDL 210 (552)
Q Consensus 135 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 210 (552)
+.|++|++++|.+..+ |..++++.+|++|++++|.+.. + ..+.++++|++|++++|+++.+|.. +.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4556666666655554 3345566666666666666555 2 3345666666666666666655553 556666666666
Q ss_pred cCCC
Q 040303 211 RDCD 214 (552)
Q Consensus 211 ~~~~ 214 (552)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6654
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.2e-09 Score=106.25 Aligned_cols=167 Identities=17% Similarity=0.114 Sum_probs=111.3
Q ss_pred CCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCC-------C--------
Q 040303 108 CPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSEL-------Q-------- 171 (552)
Q Consensus 108 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~-------~-------- 171 (552)
+++|+.+.+.. ... .++...|.++.+|+.+++.++.+..++. .+.++.++.++....... .
T Consensus 100 ~~~L~~l~L~~-~i~--~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK--NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCC--EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-ccc--chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77888887776 332 6777777888888888888776655433 355555555555433100 0
Q ss_pred ------------C----------------------------hhhh-cCCCCccEEEecCCcCcccchh-hccCCCCCEEe
Q 040303 172 ------------D----------------------------IAVI-GELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLD 209 (552)
Q Consensus 172 ------------~----------------------------~~~i-~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 209 (552)
. ...+ ..+.+|++++++++.++.+|.. +..+++|+.++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 0 0000 1267888888888888888765 77788888888
Q ss_pred ccCCCCCCccCcccccCCCCCc-EEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCCCcCCCcc--cccCC
Q 040303 210 LRDCDRLQVIPPNVLSNLSHLE-ELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDVNTLPKGL--FFEKL 286 (552)
Q Consensus 210 l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~--~l~~L 286 (552)
+..+ +..++...+..+++|+ .+.+.+... .-....+.++++|+.+++..+.+..++... .+++|
T Consensus 257 l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 257 LPHN--LKTIGQRVFSNCGRLAGTLELPASVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEEEECTTCC-----------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred CCcc--cceehHHHhhCChhccEEEEEcccce-----------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 8875 6778877788888888 888764211 113456788888888888888888887764 56677
Q ss_pred ceEE
Q 040303 287 ERYR 290 (552)
Q Consensus 287 ~~L~ 290 (552)
+.+.
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 6654
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=7.4e-09 Score=100.58 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=77.0
Q ss_pred CCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccc-eEEEecCCchhhhhcccccc
Q 040303 409 LPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQ-HLEIDECPILEEIIVIDQQE 487 (552)
Q Consensus 409 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~ 487 (552)
+++|+.++|.+++++.+...... .+++|++|++.+ +++.++. ..+..+++|+ .+.+.+ +++.+.. .
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~----~~~~L~~l~l~~--ni~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~-~--- 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFA----QKKYLLKIKLPH--NLKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEF-G--- 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTT----TCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEEEECT--TCCEECT-T---
T ss_pred cCCCeEEECCCCCcceecHhhhh----CCCCCCEEECCc--ccceehH-HHhhCChhccEEEEEcc--cceEEch-h---
Confidence 68899999999888888776655 788999999987 4888876 4578899999 999987 5666521 1
Q ss_pred ccccccCCccEEEeccccccccccCCcccccCCCccEEEe
Q 040303 488 RKNVVFPQLQFLKMVDLEKLTSFCTGDVHIEFPTLETLEV 527 (552)
Q Consensus 488 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i 527 (552)
.-..+++|+.+.+.+. +++.++...+. .+++|+.++.
T Consensus 292 -aF~~c~~L~~l~l~~n-~i~~I~~~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 292 -AFMGCDNLRYVLATGD-KITTLGDELFG-NGVPSKLIYK 328 (329)
T ss_dssp -TTTTCTTEEEEEECSS-CCCEECTTTTC-TTCCCCEEEC
T ss_pred -hhhCCccCCEEEeCCC-ccCccchhhhc-CCcchhhhcc
Confidence 2223788999988653 78888766553 6777777763
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.73 E-value=3.1e-09 Score=104.68 Aligned_cols=129 Identities=17% Similarity=0.134 Sum_probs=60.9
Q ss_pred cCcccEEEeecCCCcccCC----Ccc--CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc-----ccch
Q 040303 85 LKFYTSIVLHDSKMNVLLP----EVL--ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL-----LPSS 153 (552)
Q Consensus 85 ~~~lr~L~l~~~~~~~~~~----~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~ 153 (552)
.+.++.|++++|.+...-. ... ..++|+.|++++|.... .....+...+++|++|++++|.+.. +...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4556777777766543111 111 12456666666654321 1111222334456666666665542 1112
Q ss_pred h-cCCCCCcEEEccCCCCCC------hhhhcCCCCccEEEecCCcCcc-----cchhhccCCCCCEEeccCCC
Q 040303 154 L-GLLTNLRTLCLYCSELQD------IAVIGELKNLEILCLRGSYIEQ-----LPVEIGQLTRLRSLDLRDCD 214 (552)
Q Consensus 154 i-~~l~~L~~L~l~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 214 (552)
+ ....+|++|++++|.+.. ...+...++|++|++++|.+.. ++..+...++|++|++++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 2 234556666666665543 1233455556666665555441 23334445555555555554
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=3e-08 Score=97.13 Aligned_cols=97 Identities=23% Similarity=0.128 Sum_probs=65.2
Q ss_pred EEeecC-CCCCcccChhHhhCCCCccEEEeec-ccccccc-chhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEec
Q 040303 114 LSLWTE-KSSLITLPDNFFRKLTQVRVLDLTY-MHLSLLP-SSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLR 188 (552)
Q Consensus 114 L~l~~~-~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~ 188 (552)
+++.++ ... .+|. +..+.+|++|+|++ |.+..+| ..+++|.+|++|+|++|.+.. |..|.+|++|++|+|+
T Consensus 13 v~~~~~n~l~--~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALD--SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCT--TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCC--ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 344444 333 5666 46777777777775 7777665 457777777777777777766 4566777777777777
Q ss_pred CCcCcccchhhccCCCCCEEeccCCC
Q 040303 189 GSYIEQLPVEIGQLTRLRSLDLRDCD 214 (552)
Q Consensus 189 ~~~l~~lp~~i~~l~~L~~L~l~~~~ 214 (552)
+|++..+|..+.....|++|++.+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 77777777665444447777777665
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=2.8e-08 Score=97.27 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=50.4
Q ss_pred EEeecC-CCcccCCCccCCCCceEEEeec-CCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccC
Q 040303 91 IVLHDS-KMNVLLPEVLECPQLQLLSLWT-EKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYC 167 (552)
Q Consensus 91 L~l~~~-~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~ 167 (552)
++.+++ .+.. +|.+..+++|+.|++++ |.+. .++...|.++.+|++|+|++|.+..+|. .+++|++|++|+|++
T Consensus 13 v~~~~~n~l~~-ip~l~~~~~L~~L~l~~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDS-LHHLPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCc-cCCCCCCCCeeEEEccCCCCCC--CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 344444 4444 45422455556666553 4433 4554444555566666666655554433 345556666666665
Q ss_pred CCCCC-hh-hhcCCCCccEEEecCCcCc
Q 040303 168 SELQD-IA-VIGELKNLEILCLRGSYIE 193 (552)
Q Consensus 168 ~~~~~-~~-~i~~L~~L~~L~l~~~~l~ 193 (552)
|.+.. |. .+..+. |++|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55554 32 223333 556665555444
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=6.3e-07 Score=89.04 Aligned_cols=163 Identities=16% Similarity=0.160 Sum_probs=111.0
Q ss_pred CCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCccE
Q 040303 108 CPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLEI 184 (552)
Q Consensus 108 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~ 184 (552)
+..++.+.+... +..++...|.+. +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .++. ...+.++.+|+.
T Consensus 112 ~~~l~~i~ip~~---i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS---VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT---CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc---cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 456666666542 236677777775 6999998765 565554 3444 4799999876 4544 467889999999
Q ss_pred EEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCC
Q 040303 185 LCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNL 264 (552)
Q Consensus 185 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 264 (552)
+++..+.++.+|.+.-...+|+.+.+..+ +..++...+.++++|+.+.+...... -....+.+ .+|
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~-----------I~~~aF~~-~~L 250 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVST-----------IGQEAFRE-SGI 250 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCE-----------ECTTTTTT-CCC
T ss_pred eecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccC-----------cccccccc-CCc
Confidence 99998889988887666789999998753 77888777888999999988632210 01233444 578
Q ss_pred cEEEccCCCCCcCCCcc--cccCCceEEEE
Q 040303 265 TTLELCIPDVNTLPKGL--FFEKLERYRIC 292 (552)
Q Consensus 265 ~~L~l~~~~~~~~p~~~--~l~~L~~L~l~ 292 (552)
+.+.+. +.+..++... .+++|+.+.+.
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 888873 4455555543 55566666553
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=6.9e-07 Score=88.75 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=74.5
Q ss_pred CceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccccc-chhcCCCCCcEEEccCCCCCC-h-hhhcCCCCccEEE
Q 040303 110 QLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLP-SSLGLLTNLRTLCLYCSELQD-I-AVIGELKNLEILC 186 (552)
Q Consensus 110 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~i~~L~~L~~L~ 186 (552)
+|+.+.+..+ +..++...|.+. .|+.+.+.. .+..++ ..+.++.+|+.+++..+.+.. + ..+. ..+|+.+.
T Consensus 136 ~L~~i~l~~~---i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG---LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT---CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC---ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE
Confidence 5666666543 224555555553 466666654 344443 345666666666666665554 2 2333 45666666
Q ss_pred ecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCc
Q 040303 187 LRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLT 265 (552)
Q Consensus 187 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 265 (552)
+..+ ++.++.. +..+++|+.+.+..+ +..++...+.. .+|+.+.+.+... .-....+.++++|+
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~-----------~I~~~aF~~c~~L~ 274 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGVT-----------NIASRAFYYCPELA 274 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTCC-----------EECTTTTTTCTTCC
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCcc-----------EEChhHhhCCCCCC
Confidence 6533 4444432 455666666666542 45555444444 5566666542211 01223455666666
Q ss_pred EEEccCCC
Q 040303 266 TLELCIPD 273 (552)
Q Consensus 266 ~L~l~~~~ 273 (552)
.+.+..+.
T Consensus 275 ~l~l~~~~ 282 (401)
T 4fdw_A 275 EVTTYGST 282 (401)
T ss_dssp EEEEESSC
T ss_pred EEEeCCcc
Confidence 66665544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=4.2e-09 Score=103.75 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=111.7
Q ss_pred CCCceEEEeecCCCCCcc---cChhHhhCCCCccEEEeecccccc--ccchhcCCCCCcEEEccCCCCCC--hhhh----
Q 040303 108 CPQLQLLSLWTEKSSLIT---LPDNFFRKLTQVRVLDLTYMHLSL--LPSSLGLLTNLRTLCLYCSELQD--IAVI---- 176 (552)
Q Consensus 108 ~~~Lr~L~l~~~~~~~~~---~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~i---- 176 (552)
.+.|+.|++++|...... +...+....++|++|++++|.+.. +..-...+.+|++|++++|.+.+ ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 568999999998764211 111111133799999999998863 22223456789999999999876 3333
Q ss_pred -cCCCCccEEEecCCcCcc-----cchhhccCCCCCEEeccCCCCCCc-----cCcccccCCCCCcEEEccccccchhhh
Q 040303 177 -GELKNLEILCLRGSYIEQ-----LPVEIGQLTRLRSLDLRDCDRLQV-----IPPNVLSNLSHLEELYIRSFNKWEVEV 245 (552)
Q Consensus 177 -~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~ 245 (552)
....+|++|++++|.++. ++..+..+++|++|++++|. ++. ++.. +...++|++|+++++......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-
Confidence 356889999999998763 55566788999999999987 443 2333 567789999999865431110
Q ss_pred hhhcccccChhhhcCCCCCcEEEccCCCCCc
Q 040303 246 EAAGVKNASLEELKRLPNLTTLELCIPDVNT 276 (552)
Q Consensus 246 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 276 (552)
.......+...++|++|++++|.+..
T Consensus 228 -----~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 -----ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp -----HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred -----HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 11234556778899999999998754
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=1.1e-07 Score=81.45 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=9.3
Q ss_pred ccCcceEEEEecCCCccc
Q 040303 436 GIQTLTRLIVYGCGELRC 453 (552)
Q Consensus 436 ~l~~L~~L~i~~C~~L~~ 453 (552)
.+++|++|++++|..+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp TCSCCCEEEEESCTTCCH
T ss_pred CCCCCCEEEeCCCCccCH
Confidence 445555555555554444
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=6.8e-08 Score=82.72 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=69.5
Q ss_pred CcceEEEEecCCCccccccchhHhhhcccceEEEecCCchhhhhccccccccccc----cCCccEEEeccccccccccCC
Q 040303 438 QTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDECPILEEIIVIDQQERKNVV----FPQLQFLKMVDLEKLTSFCTG 513 (552)
Q Consensus 438 ~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~L~~~~~~ 513 (552)
..|++|++++|. +++.-- ..+..+++|++|++.+|..+++-. +.. +.. .++|++|+|++|+++++-...
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~g----L~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGC----LER-LSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHH----HHH-HHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHH----HHH-HHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 469999999997 655422 235789999999999999887641 111 111 357999999999999886555
Q ss_pred cccccCCCccEEEeecCCCcchh
Q 040303 514 DVHIEFPTLETLEVIRCPEFLLT 536 (552)
Q Consensus 514 ~~~~~~~~L~~L~i~~C~~L~~l 536 (552)
.+. .+++|++|++++||+++..
T Consensus 134 ~L~-~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 134 ALH-HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HGG-GCTTCCEEEEESCTTCCCH
T ss_pred HHh-cCCCCCEEECCCCCCCCch
Confidence 554 6899999999999999863
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=7.2e-07 Score=86.99 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=106.3
Q ss_pred ccCcccEEEeecCCCcc-cC-------CC-ccCCCCceEEEeecCCCC---C----cccChhHhhCCCCccEEEeecccc
Q 040303 84 ALKFYTSIVLHDSKMNV-LL-------PE-VLECPQLQLLSLWTEKSS---L----ITLPDNFFRKLTQVRVLDLTYMHL 147 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~-~~-------~~-~~~~~~Lr~L~l~~~~~~---~----~~~~~~~~~~l~~Lr~L~l~~~~~ 147 (552)
...+++.|.+....+.+ .. .. ...+++|+.|.+...... . ..-...++..+++|+.|+++++.-
T Consensus 105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 34567788877544431 11 11 225789999988654221 0 011234567889999999988742
Q ss_pred ccccchhcCCCCCcEEEccCCCCCC--hhhhc--CCCCccEEEecCC--c------Ccccchhh--ccCCCCCEEeccCC
Q 040303 148 SLLPSSLGLLTNLRTLCLYCSELQD--IAVIG--ELKNLEILCLRGS--Y------IEQLPVEI--GQLTRLRSLDLRDC 213 (552)
Q Consensus 148 ~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~--~L~~L~~L~l~~~--~------l~~lp~~i--~~l~~L~~L~l~~~ 213 (552)
..++. + .+.+|++|++..+.+.. ...+. ++++|++|+|+.+ . +..+...+ ..+++|++|++.+|
T Consensus 185 l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 34444 4 37899999998887754 44554 7899999988532 1 22222222 34678888888877
Q ss_pred CCCCccCccc--ccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCCCC
Q 040303 214 DRLQVIPPNV--LSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIPDV 274 (552)
Q Consensus 214 ~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 274 (552)
......+..+ .+.+++|++|+++.+.. ...+ .......+..+++|+.|+++.|.+
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L-~d~G-----~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVL-TDEG-----ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCC-BHHH-----HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCC-ChHH-----HHHHHhhcccCCcceEEECCCCcC
Confidence 6322222211 13567888888874332 1100 011223345677888888887654
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=6.4e-05 Score=74.59 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=15.6
Q ss_pred ccCcceEEEEecCCCccccccchhHhhhcccceEEEe
Q 040303 436 GIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEID 472 (552)
Q Consensus 436 ~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~ 472 (552)
.+.+|+.+.+.+ +++.++. ..+..+++|+.++|.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLP 328 (394)
T ss_dssp TCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCC
T ss_pred cccccccccccc--ccceech-hhhcCCCCCCEEEeC
Confidence 344555555532 3444433 224445555555553
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.19 E-value=6e-05 Score=74.82 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=36.3
Q ss_pred cCCCcccccccceeeeEeccCCCCccccccCcceEEEEecCCCccccccchhHhhhcccceEEEec
Q 040303 408 GLPNLETLELYNVNVERIWKSQLPAMSCGIQTLTRLIVYGCGELRCLFSSSIVNSFIRLQHLEIDE 473 (552)
Q Consensus 408 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~l~~L~~L~i~~ 473 (552)
.+.+|+.+.|.+. ++.+...... .+.+|+.+.+.. +++.+.. ..+..+++|+.+++..
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~----~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFR----GCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTT----TCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCCc-ccEEhHHhcc----CCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence 4566777777543 4444333332 667788887754 4677755 3467788888888864
No 152
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.09 E-value=2.1e-07 Score=96.82 Aligned_cols=64 Identities=6% Similarity=-0.084 Sum_probs=44.5
Q ss_pred Cccccc--ccccCcchHHHHHHHHHHHHHHHHhhcccccccccccCeEeccHHHHHHHHHHhhcccc
Q 040303 1 MYGMGL--GLFQGINRMEEARARVYTLVYKLKASCMLLEHGSKNEHWFSMHDVVRDVAIAIATREQN 65 (552)
Q Consensus 1 ~~Wiae--G~i~~~~~~e~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~mHdl~~dla~~i~~~e~~ 65 (552)
++|+|+ ||++........++.+. ++++|++++|++....+...+|+|||+||++|++++++++.
T Consensus 408 ~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 408 KLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 379999 99975431112455555 99999999999987644456799999999999999877653
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=7.2e-06 Score=79.91 Aligned_cols=149 Identities=16% Similarity=0.225 Sum_probs=98.3
Q ss_pred ccCcccEEEeecCCCcc---------cCCCcc-CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeecccccc-ccc
Q 040303 84 ALKFYTSIVLHDSKMNV---------LLPEVL-ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSL-LPS 152 (552)
Q Consensus 84 ~~~~lr~L~l~~~~~~~---------~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~ 152 (552)
.+++++.|.+....... .+.... .+|+|+.|.+.++... .++. + .+.+|+.|++..+.+.. -..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l--~l~~-~--~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL--SIGK-K--PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC--BCCS-C--BCTTCSEEEEECSBCCHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc--eecc-c--cCCCCcEEEEecCCCChHHHH
Confidence 46789999987543211 122222 6799999999987322 4444 2 37899999999887652 122
Q ss_pred hhc--CCCCCcEEEccCC--C------CCCh-hhh--cCCCCccEEEecCCcCcc-cchhh---ccCCCCCEEeccCCCC
Q 040303 153 SLG--LLTNLRTLCLYCS--E------LQDI-AVI--GELKNLEILCLRGSYIEQ-LPVEI---GQLTRLRSLDLRDCDR 215 (552)
Q Consensus 153 ~i~--~l~~L~~L~l~~~--~------~~~~-~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~l~~~~~ 215 (552)
.++ .+++|++|+|+.+ . +... ..+ ..+++|++|++.+|.+.. .+..+ ..+++|++|+++.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~- 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV- 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence 333 7999999998632 1 1111 122 358999999999987752 22222 357899999998876
Q ss_pred CCc-----cCcccccCCCCCcEEEccccc
Q 040303 216 LQV-----IPPNVLSNLSHLEELYIRSFN 239 (552)
Q Consensus 216 ~~~-----~~~~~l~~l~~L~~L~l~~~~ 239 (552)
++. ++.. +..+++|+.|+++.+.
T Consensus 291 L~d~G~~~L~~~-L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDH-VDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTT-HHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhh-cccCCcceEEECCCCc
Confidence 443 3333 4668999999998554
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=9.1e-06 Score=71.25 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=42.6
Q ss_pred hhCCCCccEEEeecc-ccc-----cccchhcCCCCCcEEEccCCCCCC--h----hhhcCCCCccEEEecCCcCcc----
Q 040303 131 FRKLTQVRVLDLTYM-HLS-----LLPSSLGLLTNLRTLCLYCSELQD--I----AVIGELKNLEILCLRGSYIEQ---- 194 (552)
Q Consensus 131 ~~~l~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~---- 194 (552)
+...+.|++|++++| .+. .+...+...++|++|++++|.+.+ . ..+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345556666666665 543 244445555666666666666543 1 233444556666666665542
Q ss_pred -cchhhccCCCCCEEec
Q 040303 195 -LPVEIGQLTRLRSLDL 210 (552)
Q Consensus 195 -lp~~i~~l~~L~~L~l 210 (552)
+...+...++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 3334444555555555
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=1.1e-05 Score=70.83 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=72.7
Q ss_pred CCCCceEEEeecC-CCCCc---ccChhHhhCCCCccEEEeeccccc-----cccchhcCCCCCcEEEccCCCCCC-----
Q 040303 107 ECPQLQLLSLWTE-KSSLI---TLPDNFFRKLTQVRVLDLTYMHLS-----LLPSSLGLLTNLRTLCLYCSELQD----- 172 (552)
Q Consensus 107 ~~~~Lr~L~l~~~-~~~~~---~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~----- 172 (552)
..+.|++|++++| ..... .+.. .+...+.|++|+|++|.+. .+...+...++|++|++++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 4567777777766 44310 1222 2356678888888888775 255566677888888888888765
Q ss_pred -hhhhcCCCCccEEEe--cCCcCcc-----cchhhccCCCCCEEeccCCC
Q 040303 173 -IAVIGELKNLEILCL--RGSYIEQ-----LPVEIGQLTRLRSLDLRDCD 214 (552)
Q Consensus 173 -~~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 214 (552)
...+....+|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 245667778889998 7777662 44455666788888887765
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.6e-05 Score=73.49 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=39.4
Q ss_pred CCCCCcEEEccCCCCCCh----hhhcCCCCccEEEecCCcCcccchhhccCC--CCCEEeccCCCCCCccCc------cc
Q 040303 156 LLTNLRTLCLYCSELQDI----AVIGELKNLEILCLRGSYIEQLPVEIGQLT--RLRSLDLRDCDRLQVIPP------NV 223 (552)
Q Consensus 156 ~l~~L~~L~l~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~~------~~ 223 (552)
++++|++|+|++|.+... ..+.++++|++|+|++|.+..+ ..+..+. +|++|++.+|.....+|. .+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 455555566555555441 2334555666666665555544 2333333 566666665553333331 12
Q ss_pred ccCCCCCcEEE
Q 040303 224 LSNLSHLEELY 234 (552)
Q Consensus 224 l~~l~~L~~L~ 234 (552)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45556666665
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=7.8e-06 Score=75.52 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=28.4
Q ss_pred CCCCccEEEeecccccc---ccchhcCCCCCcEEEccCCCCCChhhhcCCC--CccEEEecCCcCc
Q 040303 133 KLTQVRVLDLTYMHLSL---LPSSLGLLTNLRTLCLYCSELQDIAVIGELK--NLEILCLRGSYIE 193 (552)
Q Consensus 133 ~l~~Lr~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~~~i~~L~--~L~~L~l~~~~l~ 193 (552)
++++|+.|+|++|.+.. +|..++.+++|++|+|++|.+.....+..+. +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 34455555555554433 2233445555555555555544433333333 5555555555443
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.68 E-value=0.0043 Score=61.29 Aligned_cols=119 Identities=11% Similarity=0.175 Sum_probs=69.7
Q ss_pred CceEEEeecCCCCCcccChhHhhCCCCccEEEeeccc---cccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCcc
Q 040303 110 QLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMH---LSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLE 183 (552)
Q Consensus 110 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~ 183 (552)
.|+++.+... +..+....|.++.+|+.+.+..+. ++.+.. .+.++.+|+.+.+..+ +.. ...+..+.+|+
T Consensus 65 ~L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECCC---eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 4777777542 236667777788888888876652 444433 4566677776665443 222 34566777777
Q ss_pred EEEecCCcCcccch-hhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 184 ILCLRGSYIEQLPV-EIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 184 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
.+.+... +..++. .+..+.+|+.+.+... +..+....+. ..+|+.+.+.
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip 190 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIP 190 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEEC
T ss_pred cccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEEC
Confidence 7777543 333333 3556677777776543 4455444333 3456766664
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.99 E-value=0.024 Score=55.50 Aligned_cols=120 Identities=8% Similarity=0.117 Sum_probs=57.3
Q ss_pred CCCCceEEEeecCCCCCcccChhHhhCCCCccEEEeeccccccccc-hhcCCCCCcEEEccCCCCCC--hhhhcCCCCcc
Q 040303 107 ECPQLQLLSLWTEKSSLITLPDNFFRKLTQVRVLDLTYMHLSLLPS-SLGLLTNLRTLCLYCSELQD--IAVIGELKNLE 183 (552)
Q Consensus 107 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~ 183 (552)
...+|+.+.+.. .+..++...|.++.+|+.+++..+ ++.++. .+.++ .|+.+.+..+ ++. ...+.. .+|+
T Consensus 44 ~~~~i~~v~ip~---~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 44 DRDRISEVRVNS---GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGCSEEEECT---TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccCCEEEEeCC---CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 445666666643 223566666777777777777543 444433 23343 4555554322 222 122332 2566
Q ss_pred EEEecCCcCcccchhhccCCCCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 184 ILCLRGSYIEQLPVEIGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 184 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
.+.+..+ +..+....-.-.+|....+... +..+....+..+.+++...+.
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~ 166 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVS 166 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEEC
T ss_pred cccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccc
Confidence 6666543 3333332222234555444332 334443334555666665544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.06 E-value=0.021 Score=56.30 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=59.8
Q ss_pred hhcCCCCCcEEEccCCCCCC-hhhhcCCCCccEEEecCCcCcccchh-hccCCCCCEEeccCCCCCCccCcccccCCCCC
Q 040303 153 SLGLLTNLRTLCLYCSELQD-IAVIGELKNLEILCLRGSYIEQLPVE-IGQLTRLRSLDLRDCDRLQVIPPNVLSNLSHL 230 (552)
Q Consensus 153 ~i~~l~~L~~L~l~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 230 (552)
.+.++.+|+.+.+..+...- ...+.++.+|+.+.+.. .++.++.. +..+.+|+.+.+..+ +..+....+..+++|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCC
Confidence 35566667766665433222 34556666777776643 35555443 555667777776542 455655556667777
Q ss_pred cEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEccCC
Q 040303 231 EELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELCIP 272 (552)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 272 (552)
+.+.+..... .-....+.++.+|+.+++.++
T Consensus 337 ~~i~ip~sv~-----------~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSSVT-----------KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTTCC-----------BCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcccC-----------EEhHhHhhCCCCCCEEEECCc
Confidence 7776642211 012345666777777766654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.15 E-value=0.14 Score=50.00 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=75.1
Q ss_pred hhHhhCCCCccEEEeeccccccc-cchhcCCCCCcEEEccCCCCCC--hhhhcCCCCccEEEecCCcCcccchh-hccCC
Q 040303 128 DNFFRKLTQVRVLDLTYMHLSLL-PSSLGLLTNLRTLCLYCSELQD--IAVIGELKNLEILCLRGSYIEQLPVE-IGQLT 203 (552)
Q Consensus 128 ~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~ 203 (552)
...+.....|+.+.+..+ +..+ ...+.++..|+.+.+..+ ++. ...+.++.+|+.+.+... +..++.. +..+.
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 334456667777766543 2222 234556677777777544 332 355666777777777543 5555443 56677
Q ss_pred CCCEEeccCCCCCCccCcccccCCCCCcEEEccccccchhhhhhhcccccChhhhcCCCCCcEEEcc
Q 040303 204 RLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIRSFNKWEVEVEAAGVKNASLEELKRLPNLTTLELC 270 (552)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 270 (552)
+|+.+.+..+. +..++...+.++.+|+.+.+..... .-....+.++.+|+.+.+.
T Consensus 287 ~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~l~-----------~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 287 NLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTALK-----------TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC-----------EECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccc-cceehhhhhcCCCCCCEEEcCcccc-----------EEHHHHhhCCCCCCEEEEC
Confidence 77777776543 5666665567777777777752211 0122456677777777664
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.13 E-value=0.085 Score=42.53 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=12.5
Q ss_pred CcEEEccCCCCCC--hhhhcCCCCccEEEecCC
Q 040303 160 LRTLCLYCSELQD--IAVIGELKNLEILCLRGS 190 (552)
Q Consensus 160 L~~L~l~~~~~~~--~~~i~~L~~L~~L~l~~~ 190 (552)
|++|+|++|.++. +..+..+.+|++|+|.+|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444444444333 123334444444444444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.10 E-value=0.13 Score=41.32 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=15.2
Q ss_pred CCCEEeccCCCCCCccCcccccCCCCCcEEEcc
Q 040303 204 RLRSLDLRDCDRLQVIPPNVLSNLSHLEELYIR 236 (552)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (552)
+|++|++++|. +..++.+.+..+++|+.|++.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEec
Confidence 34555555444 444444444444445555444
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.91 E-value=0.16 Score=44.04 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=42.6
Q ss_pred hCCCCccEEEeecc-ccc-----cccchhcCCCCCcEEEccCCCCCC--h----hhhcCCCCccEEEecCCcCc-----c
Q 040303 132 RKLTQVRVLDLTYM-HLS-----LLPSSLGLLTNLRTLCLYCSELQD--I----AVIGELKNLEILCLRGSYIE-----Q 194 (552)
Q Consensus 132 ~~l~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~ 194 (552)
.+-..|+.|+|+++ .+. .+-+.+..-++|+.|+|++|.+.+ - ..+..=..|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666654 443 244455556667777776666654 1 23334455666666666554 1
Q ss_pred cchhhccCCCCCEEeccC
Q 040303 195 LPVEIGQLTRLRSLDLRD 212 (552)
Q Consensus 195 lp~~i~~l~~L~~L~l~~ 212 (552)
+-..+..-+.|++|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222233334466666554
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.52 E-value=0.1 Score=45.20 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=52.7
Q ss_pred hCCCCccEEEeeccccc-----cccchhcCCCCCcEEEccCCCCCC--h----hhhcCCCCccEEEecCCcC---c----
Q 040303 132 RKLTQVRVLDLTYMHLS-----LLPSSLGLLTNLRTLCLYCSELQD--I----AVIGELKNLEILCLRGSYI---E---- 193 (552)
Q Consensus 132 ~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~----~~i~~L~~L~~L~l~~~~l---~---- 193 (552)
..-..|+.|+|++|.+. .+.+.+..-+.|++|+|++|.+.. . +.+..=..|++|+++++.. .
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 44567888888888775 355566677788888888888765 1 3444556688888876522 2
Q ss_pred -ccchhhccCCCCCEEeccCC
Q 040303 194 -QLPVEIGQLTRLRSLDLRDC 213 (552)
Q Consensus 194 -~lp~~i~~l~~L~~L~l~~~ 213 (552)
.+-..+..-+.|+.|+++.+
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHhCCCcCeEeccCC
Confidence 12223444456777766543
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.01 E-value=0.096 Score=59.97 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhcccccccccccCeEeccHHHHHHHHHHhhcc
Q 040303 19 RARVYTLVYKLKASCMLLEHGSKNEHWFSMHDVVRDVAIAIATRE 63 (552)
Q Consensus 19 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~mHdl~~dla~~i~~~e 63 (552)
++.+.+++++|++++|++....+...+|+|||+||++|+..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 455678899999999999765223336999999999999987765
No 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=90.65 E-value=0.13 Score=56.02 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcccccccccccCeEeccHHHHHHHH
Q 040303 22 VYTLVYKLKASCMLLEHGSKNEHWFSMHDVVRDVAI 57 (552)
Q Consensus 22 ~~~~~~~L~~~~~~~~~~~~~~~~~~mHdl~~dla~ 57 (552)
+.+++++|+++|||+... ..++|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~--~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP--KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS--SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC--CCCEEEehHHHHHHhc
Confidence 567889999999999853 5678999999999763
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=81.87 E-value=1.1 Score=46.47 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcccccccccccCeEeccHHHHHHHHHHh
Q 040303 21 RVYTLVYKLKASCMLLEHGSKNEHWFSMHDVVRDVAIAIA 60 (552)
Q Consensus 21 ~~~~~~~~L~~~~~~~~~~~~~~~~~~mHdl~~dla~~i~ 60 (552)
.+.+++++|+++++++....+...+|+|||++|+++....
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 4678899999999998664233447999999999998774
Done!