BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040304
(1000 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 737 IEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNL 796
+E L + C+ L + F A L+ +++ C NL +LP+ ++ L+ L ++ + GC NL
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 797 VSLP 800
LP
Sbjct: 291 SRLP 294
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 772 LKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSL 831
L++LP + +L+ L +SI C L LPE P + D S E + +L
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPE---PLASTDASGEH----------QGLVNL 185
Query: 832 QELSLKKCPGIVFFPEEGLS-TNLTYLEISGANIYKPLVNWG--FHKLTSLRKLCINGCS 888
Q L L + GI P + NL L+I + PL G H L L +L + GC+
Sbjct: 186 QSLRL-EWTGIRSLPASIANLQNLKSLKIRNS----PLSALGPAIHHLPKLEELDLRGCT 240
Query: 889 DAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPE- 947
++P + G L + + D L L H L LE L++ C N + P
Sbjct: 241 ALRNYPPIFGG---RAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 948 -AGFPSSLLSL 957
A P++ + L
Sbjct: 297 IAQLPANCIIL 307
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 45/110 (40%), Gaps = 24/110 (21%)
Query: 295 LRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAI--------------TSLFN 340
L+ L L I +P SI L++L+ L S + L AI T+L N
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 341 ----------LEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELP 380
L+ LIL DC LL LP I L L LD+ G L LP
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 298 LSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPS 357
L L + + P L HL++ + + LP+ LE L L+ L LP+
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPA 144
Query: 358 SIGNLVNLYHLDIDGANRLCELP 380
SI +L L L I L ELP
Sbjct: 145 SIASLNRLRELSIRACPELTELP 167
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 305 ISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGN--- 361
+ E+P + L L + + ++ LP +I SL L L + C L +LP + +
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 362 ------LVNLYHLDIDGANRLCELPLGMKELKCLRTL 392
LVNL L ++ + LP + L+ L++L
Sbjct: 176 SGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 285 ISDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEIL 344
IS + K L L L ++E+P I L +LR L+ S + + LP + S F L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298
Query: 345 ILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLGMKELKCL 389
D ++ LP GNL NL L ++G PL + LK L
Sbjct: 299 YFFD-NMVTTLPWEFGNLCNLQFLGVEGN------PLEKQFLKIL 336
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Query: 269 VEECFFSPAGYISPMVISDLLPKCKKLRVLSLG-RYRISEVPTSIGCLKHLRYLNFSESW 327
++E + G+ I L C +L L L Y +P+S+G L LR L W
Sbjct: 393 LQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL---W 447
Query: 328 IKCL----PEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLGM 383
+ L P+ + + LE LIL L ++PS + N NL + + E+P +
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 384 KELKCLRTL 392
L+ L L
Sbjct: 508 GRLENLAIL 516
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 308 VPTSIGCLKHLRYLNFSESWIK-CLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLY 366
+P IG + +L LN + I +P+ + L L IL LS +L ++P ++ L L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 367 HLDIDGANRLCELP 380
+D+ N +P
Sbjct: 705 EIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Query: 269 VEECFFSPAGYISPMVISDLLPKCKKLRVLSLG-RYRISEVPTSIGCLKHLRYLNFSESW 327
++E + G+ I L C +L L L Y +P+S+G L LR L W
Sbjct: 396 LQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL---W 450
Query: 328 IKCL----PEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLGM 383
+ L P+ + + LE LIL L ++PS + N NL + + E+P +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 384 KELKCLRTL 392
L+ L L
Sbjct: 511 GRLENLAIL 519
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 308 VPTSIGCLKHLRYLNFSESWIK-CLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLY 366
+P IG + +L LN + I +P+ + L L IL LS +L ++P ++ L L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 367 HLDIDGANRLCELP 380
+D+ N +P
Sbjct: 708 EIDLSNNNLSGPIP 721
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 298 LSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLP 356
L+L +R S++ T+ C L+ L+ + + +K LP + L L+ L+LS
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQ 315
Query: 357 SSIGNLVNLYHLDIDGANRLCELPLG-MKELKCLRTLT---NFIVGKDSGCALKDLKNWK 412
S N +L HL I G + L +G +++L L+TL N I D C+L+ LKN
Sbjct: 316 ISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDC-CSLQ-LKNLS 373
Query: 413 FLR 415
L+
Sbjct: 374 HLQ 376
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 296 RVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLL 353
R+L LG+ RI + HL L +E+ + + P A +LFNL L L RL L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 354 KLPSSIGNLVNLYHLDIDGANRLCELPLGMKELKCLRTL 392
L NL LDI + L ++L L++L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 34/169 (20%)
Query: 560 FEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNH--LPSLEKIVITECRQ 617
E+LQ W+ P TE+ + + PR+ +L K P L + + EK+ + E
Sbjct: 843 IEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNA 902
Query: 618 LVISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEF---------------- 661
L P + K I K ++ L + +++ NI +
Sbjct: 903 AFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELS--NIEQVVAVIDEEMCINCGKCY 960
Query: 662 -----ENWSSQKFQNVEHLEIV--GCEGSSTCLDLESLSVFRCPLLTCL 703
+ + +F HL V C G + CL + CP++ C+
Sbjct: 961 MTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSV-------CPIIDCI 1002
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 560 FEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLE---KIVITECR 616
E+LQ W+ P TE+ + + PR+ +L + +LPN P LE KI+ E
Sbjct: 843 IEELQGWDGQSPGTESHQKGKPVPRIAEL-------MGKKLPNFGPYLEQRKKIIAEEKM 895
Query: 617 QLVISLPSVPAL 628
+L + P L
Sbjct: 896 RLKEQNAAFPPL 907
>pdb|2ZOX|A Chain A, Crystal Structure Of The Covalent Intermediate Of Human
Cytosolic Beta-Glucosidase
pdb|3VKK|A Chain A, Crystal Structure Of The Covalent Intermediate Of Human
Cytosolic Beta-Glucosidase-Mannose Complex
Length = 469
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 298 LSLGRYRISEVPTSIGCLKHL--RYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKL 355
++ G Y + E + C+K L + FS SW + LP+ T N + + + + L
Sbjct: 51 VACGSYTLWE--EDLKCIKQLGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLL 108
Query: 356 PSSIGNLVNLYHLDI 370
+ + +V LYH D+
Sbjct: 109 KNGVTPIVTLYHFDL 123
>pdb|2JFE|X Chain X, The Crystal Structure Of Human Cytosolic Beta-Glucosidase
Length = 469
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 298 LSLGRYRISEVPTSIGCLKHL--RYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKL 355
++ G Y + E + C+K L + FS SW + LP+ T N + + + + L
Sbjct: 51 VACGSYTLWE--EDLKCIKQLGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLL 108
Query: 356 PSSIGNLVNLYHLDI 370
+ + +V LYH D+
Sbjct: 109 KNGVTPIVTLYHFDL 123
>pdb|2E9L|A Chain A, Crystal Structure Of Human Cytosolic Neutral
Beta-Glycosylceramidase (Klotho-Related Prote:klrp)
Complex With Glucose And Fatty Acids
pdb|2E9M|A Chain A, Crystal Structure Of Human Cytosolic Neutral Beta-
Glycosylceramidase (Klotho-Related Prote:klrp) Complex
With Galactose And Fatty Acids
Length = 469
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 298 LSLGRYRISEVPTSIGCLKHL--RYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKL 355
++ G Y + E + C+K L + FS SW + LP+ T N + + + + L
Sbjct: 51 VACGSYTLWE--EDLKCIKQLGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLL 108
Query: 356 PSSIGNLVNLYHLDI 370
+ + +V LYH D+
Sbjct: 109 KNGVTPIVTLYHFDL 123
>pdb|2X5Q|A Chain A, Crystal Structure Of Hypothetical Protein Sso1986 From
Sulfolobus Solfataricus P2
pdb|2X5Q|B Chain B, Crystal Structure Of Hypothetical Protein Sso1986 From
Sulfolobus Solfataricus P2
Length = 198
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 766 ISSCDNLK-----SLPIGLN-NLSHLHRISIEGCHNLVSLPEDALPSSVVDV--SIEECD 817
ISS DN + S+ I N N H+ +I +G HN++ L A+ S ++ + + CD
Sbjct: 20 ISSEDNNQIKIGSSVSIEYNQNGQHVSQIDDKGLHNILVLTGYAIDESTGELVPTFDPCD 79
Query: 818 KLKGPLPTGKI 828
+KG L +GKI
Sbjct: 80 YVKGILISGKI 90
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 280 ISPMVISDLLPKCK-KLRVLSLGRYRISEVPT-SIGCLKHLRYLNFSESWIKCLPEAITS 337
ISP V L C+ + ++L ++ + + + C L+ L+ + + + LP +
Sbjct: 243 ISPAVFEGL---CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG 299
Query: 338 LFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLG-MKELKCLRTL 392
L L+ L+LS + S N +L HL I G + EL G ++ L+ LR L
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 777 IGLNNLSHLHR-----ISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSL 831
+G ++ S++H+ + I+G +NL +P++ L SV I +C L +P K+ +
Sbjct: 15 LGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCGGLNVTIPY-KVEVM 73
Query: 832 QEL 834
+EL
Sbjct: 74 KEL 76
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 305 ISEVPTSIGCLKHLRYLNFSESWIK-CLPEAITSLFNLEILILSDCRLLLKLPSSIGNLV 363
+ +P +I L L YL + + + +P+ ++ + L L S L LP SI +L
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 364 NLYHLDIDGANRL 376
NL + DG NR+
Sbjct: 150 NLVGITFDG-NRI 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,354,019
Number of Sequences: 62578
Number of extensions: 1269471
Number of successful extensions: 2500
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2458
Number of HSP's gapped (non-prelim): 47
length of query: 1000
length of database: 14,973,337
effective HSP length: 108
effective length of query: 892
effective length of database: 8,214,913
effective search space: 7327702396
effective search space used: 7327702396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)