Query 040304
Match_columns 1000
No_of_seqs 475 out of 3940
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.4E-55 7.4E-60 515.7 28.3 350 4-373 287-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.9E-51 4.1E-56 514.3 35.4 355 4-393 322-687 (1153)
3 PLN00113 leucine-rich repeat r 100.0 4.1E-41 8.9E-46 423.9 27.3 526 236-921 55-588 (968)
4 PLN00113 leucine-rich repeat r 100.0 3.6E-38 7.9E-43 397.2 26.4 531 293-965 69-607 (968)
5 KOG0618 Serine/threonine phosp 99.9 5.5E-29 1.2E-33 276.0 -3.1 263 687-964 219-488 (1081)
6 KOG0472 Leucine-rich repeat pr 99.9 3E-29 6.5E-34 252.1 -12.4 172 781-963 360-539 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 5.7E-29 1.2E-33 250.1 -11.4 245 289-637 64-308 (565)
8 KOG4194 Membrane glycoprotein 99.9 1.3E-25 2.9E-30 236.1 8.4 200 294-597 79-282 (873)
9 KOG4194 Membrane glycoprotein 99.9 6.6E-25 1.4E-29 231.0 7.7 339 499-888 77-427 (873)
10 KOG0618 Serine/threonine phosp 99.9 1E-24 2.2E-29 242.4 -4.3 106 285-392 37-142 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.1E-21 6.7E-26 242.7 22.7 243 686-944 656-908 (1153)
12 KOG0444 Cytoskeletal regulator 99.9 1.4E-24 3.1E-29 229.6 -6.7 370 292-800 6-379 (1255)
13 PF00931 NB-ARC: NB-ARC domain 99.9 4.5E-23 9.8E-28 221.8 4.6 154 4-158 127-285 (287)
14 KOG0444 Cytoskeletal regulator 99.9 1.1E-23 2.5E-28 222.8 -3.9 370 314-921 5-379 (1255)
15 KOG4237 Extracellular matrix p 99.7 1.7E-18 3.7E-23 175.1 -5.0 115 279-394 77-195 (498)
16 KOG4237 Extracellular matrix p 99.6 4.2E-16 9.1E-21 158.0 -0.5 78 296-373 70-150 (498)
17 PRK15387 E3 ubiquitin-protein 99.5 6.2E-14 1.4E-18 163.2 14.2 79 293-381 201-279 (788)
18 PRK15387 E3 ubiquitin-protein 99.5 6.8E-14 1.5E-18 162.8 14.3 74 853-940 383-456 (788)
19 KOG0617 Ras suppressor protein 99.5 1.6E-15 3.5E-20 135.6 -4.2 102 290-392 30-132 (264)
20 PRK15370 E3 ubiquitin-protein 99.4 5.4E-13 1.2E-17 156.7 13.2 244 689-965 180-428 (754)
21 KOG0617 Ras suppressor protein 99.4 3.3E-15 7.2E-20 133.6 -4.7 108 285-393 48-156 (264)
22 PRK15370 E3 ubiquitin-protein 99.4 7.5E-13 1.6E-17 155.5 9.8 83 293-383 178-260 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.2 1.3E-11 2.9E-16 147.3 6.0 122 292-414 544-670 (889)
24 cd00116 LRR_RI Leucine-rich re 99.0 9.5E-11 2.1E-15 128.5 2.6 88 287-374 17-119 (319)
25 cd00116 LRR_RI Leucine-rich re 99.0 4E-11 8.7E-16 131.5 -1.0 97 297-393 2-114 (319)
26 KOG4341 F-box protein containi 98.8 1.5E-10 3.2E-15 119.5 -6.9 286 626-945 138-442 (483)
27 KOG4341 F-box protein containi 98.7 5.6E-10 1.2E-14 115.2 -4.0 271 605-892 138-441 (483)
28 PRK15386 type III secretion pr 98.7 5.9E-08 1.3E-12 103.8 10.7 161 782-967 51-215 (426)
29 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.4E-13 115.4 4.3 103 289-393 112-215 (394)
30 KOG0532 Leucine-rich repeat (L 98.6 1.7E-09 3.7E-14 115.8 -3.9 98 293-393 75-172 (722)
31 KOG0532 Leucine-rich repeat (L 98.6 2.5E-09 5.5E-14 114.6 -3.4 105 285-392 90-194 (722)
32 PLN03150 hypothetical protein; 98.6 6.4E-08 1.4E-12 114.1 7.6 91 295-385 420-512 (623)
33 PF14580 LRR_9: Leucine-rich r 98.6 5.2E-08 1.1E-12 93.0 5.0 99 290-392 16-118 (175)
34 PF14580 LRR_9: Leucine-rich r 98.6 7.5E-08 1.6E-12 92.0 5.8 105 291-398 40-151 (175)
35 PF13855 LRR_8: Leucine rich r 98.6 6.9E-08 1.5E-12 75.4 4.3 58 293-350 1-60 (61)
36 KOG3207 Beta-tubulin folding c 98.5 9.3E-09 2E-13 107.0 -1.6 132 806-939 197-336 (505)
37 KOG1259 Nischarin, modulator o 98.5 2.2E-08 4.8E-13 98.6 0.3 101 289-393 280-380 (490)
38 KOG1259 Nischarin, modulator o 98.5 2.4E-08 5.2E-13 98.4 0.0 125 827-963 282-410 (490)
39 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.5E-12 107.2 5.2 95 296-392 96-191 (394)
40 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 4E-12 73.0 3.6 59 316-374 1-60 (61)
41 KOG3207 Beta-tubulin folding c 98.4 6.7E-08 1.4E-12 100.8 0.9 206 731-964 117-338 (505)
42 PRK15386 type III secretion pr 98.4 1.2E-06 2.5E-11 94.1 9.6 60 687-752 52-111 (426)
43 PLN03150 hypothetical protein; 98.3 1.1E-06 2.3E-11 103.9 7.8 98 283-380 432-532 (623)
44 KOG1909 Ran GTPase-activating 98.2 3E-07 6.5E-12 93.5 -1.0 253 288-593 25-308 (382)
45 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.7E-11 59.8 3.7 38 294-331 2-39 (44)
46 PF12799 LRR_4: Leucine Rich r 98.0 8.1E-06 1.8E-10 58.0 4.0 40 316-356 1-40 (44)
47 KOG2120 SCF ubiquitin ligase, 98.0 2E-07 4.3E-12 92.2 -5.9 183 711-915 185-374 (419)
48 KOG2120 SCF ubiquitin ligase, 97.9 3.5E-07 7.5E-12 90.5 -5.2 156 779-939 206-373 (419)
49 KOG0531 Protein phosphatase 1, 97.9 2E-06 4.2E-11 97.1 -0.8 100 289-392 91-191 (414)
50 KOG4579 Leucine-rich repeat (L 97.8 3.6E-06 7.7E-11 73.7 -0.1 92 289-382 49-141 (177)
51 KOG0531 Protein phosphatase 1, 97.7 7.4E-06 1.6E-10 92.5 -0.7 100 291-394 70-169 (414)
52 KOG1909 Ran GTPase-activating 97.6 1.1E-05 2.4E-10 82.4 -0.6 65 499-565 240-310 (382)
53 KOG4579 Leucine-rich repeat (L 97.6 8.1E-06 1.8E-10 71.5 -2.0 99 293-393 27-129 (177)
54 KOG2982 Uncharacterized conser 97.5 5.3E-05 1.2E-09 75.5 2.1 39 551-589 247-285 (418)
55 KOG1859 Leucine-rich repeat pr 97.4 1.3E-05 2.7E-10 89.2 -3.6 96 294-394 165-261 (1096)
56 COG5238 RNA1 Ran GTPase-activa 97.3 8.3E-05 1.8E-09 73.1 1.4 90 290-380 27-136 (388)
57 KOG1859 Leucine-rich repeat pr 97.2 4.3E-05 9.4E-10 85.1 -2.1 85 285-373 179-264 (1096)
58 KOG2982 Uncharacterized conser 97.1 0.00021 4.5E-09 71.4 1.7 83 291-373 69-156 (418)
59 PRK04841 transcriptional regul 97.1 0.006 1.3E-07 77.4 14.8 171 5-205 151-332 (903)
60 KOG1947 Leucine rich repeat pr 96.9 4.8E-05 1.1E-09 88.8 -5.7 61 909-970 381-445 (482)
61 KOG1644 U2-associated snRNP A' 96.8 0.0013 2.9E-08 62.3 4.5 99 293-394 42-147 (233)
62 KOG1947 Leucine rich repeat pr 96.7 0.00019 4.1E-09 83.9 -2.9 141 827-970 267-419 (482)
63 KOG3665 ZYG-1-like serine/thre 96.6 0.0012 2.6E-08 78.0 2.6 78 293-372 122-204 (699)
64 KOG1644 U2-associated snRNP A' 96.5 0.0025 5.4E-08 60.5 3.6 85 288-373 59-150 (233)
65 KOG3665 ZYG-1-like serine/thre 96.5 0.0011 2.3E-08 78.4 1.4 104 806-914 122-230 (699)
66 KOG2123 Uncharacterized conser 96.2 0.0002 4.4E-09 70.8 -5.2 102 828-935 18-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.2 0.0023 5E-08 37.6 1.2 19 318-336 2-20 (22)
68 KOG2123 Uncharacterized conser 95.9 0.00073 1.6E-08 67.0 -3.1 101 293-396 19-126 (388)
69 KOG2739 Leucine-rich acidic nu 95.8 0.0039 8.4E-08 62.0 1.4 111 827-941 41-155 (260)
70 KOG2739 Leucine-rich acidic nu 95.5 0.0072 1.6E-07 60.2 2.1 59 314-373 41-101 (260)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0074 1.6E-07 35.5 1.3 22 294-315 1-22 (22)
72 KOG0473 Leucine-rich repeat pr 94.8 0.0014 3E-08 63.2 -5.0 84 290-374 39-122 (326)
73 PF13306 LRR_5: Leucine rich r 94.1 0.082 1.8E-06 48.5 5.2 101 285-392 4-108 (129)
74 KOG3864 Uncharacterized conser 94.0 0.0081 1.7E-07 57.3 -1.7 90 853-944 102-191 (221)
75 PF13504 LRR_7: Leucine rich r 93.9 0.039 8.3E-07 30.0 1.4 16 317-332 2-17 (17)
76 TIGR00635 ruvB Holliday juncti 93.3 0.56 1.2E-05 50.6 10.8 154 6-184 130-289 (305)
77 PF13504 LRR_7: Leucine rich r 92.5 0.077 1.7E-06 28.8 1.3 17 293-309 1-17 (17)
78 PRK00080 ruvB Holliday junctio 92.4 0.97 2.1E-05 49.3 11.1 154 6-184 151-310 (328)
79 KOG0473 Leucine-rich repeat pr 92.2 0.01 2.2E-07 57.6 -4.1 87 305-393 30-117 (326)
80 PF13306 LRR_5: Leucine rich r 91.6 0.3 6.5E-06 44.7 5.1 100 283-389 25-128 (129)
81 COG5238 RNA1 Ran GTPase-activa 89.5 0.46 1E-05 47.7 4.4 45 311-356 87-136 (388)
82 smart00369 LRR_TYP Leucine-ric 89.4 0.3 6.6E-06 30.0 2.0 19 316-334 2-20 (26)
83 smart00370 LRR Leucine-rich re 89.4 0.3 6.6E-06 30.0 2.0 19 316-334 2-20 (26)
84 KOG3864 Uncharacterized conser 89.4 0.095 2.1E-06 50.2 -0.4 87 877-966 101-190 (221)
85 PRK06893 DNA replication initi 84.0 4.2 9.1E-05 41.6 8.2 71 5-79 123-203 (229)
86 COG3903 Predicted ATPase [Gene 83.6 1.2 2.7E-05 47.9 4.1 192 4-207 115-316 (414)
87 COG2909 MalT ATP-dependent tra 82.9 4.4 9.5E-05 48.0 8.4 174 4-207 158-340 (894)
88 smart00369 LRR_TYP Leucine-ric 82.7 0.95 2E-05 27.7 1.7 20 292-311 1-20 (26)
89 smart00370 LRR Leucine-rich re 82.7 0.95 2E-05 27.7 1.7 20 292-311 1-20 (26)
90 smart00367 LRR_CC Leucine-rich 77.9 1.3 2.7E-05 27.2 1.1 15 929-943 2-16 (26)
91 smart00364 LRR_BAC Leucine-ric 73.4 2.1 4.5E-05 26.2 1.2 17 317-333 3-19 (26)
92 PF01637 Arch_ATPase: Archaeal 67.6 16 0.00034 37.3 7.2 70 6-78 156-233 (234)
93 smart00365 LRR_SD22 Leucine-ri 66.2 4.6 0.0001 24.8 1.6 15 316-330 2-16 (26)
94 TIGR03015 pepcterm_ATPase puta 60.2 20 0.00044 37.6 6.5 58 26-83 185-242 (269)
95 PRK00411 cdc6 cell division co 58.6 1.5E+02 0.0032 33.2 13.5 162 9-183 176-357 (394)
96 PF13516 LRR_6: Leucine Rich r 57.6 6 0.00013 23.5 1.1 13 316-328 2-14 (24)
97 PRK09087 hypothetical protein; 57.4 41 0.00089 34.2 7.8 70 5-78 116-194 (226)
98 COG3899 Predicted ATPase [Gene 54.3 89 0.0019 38.9 11.3 162 25-205 211-386 (849)
99 smart00368 LRR_RI Leucine rich 46.6 14 0.00031 23.0 1.6 13 317-329 3-15 (28)
100 TIGR03420 DnaA_homol_Hda DnaA 44.8 1E+02 0.0022 31.2 8.6 72 6-81 123-203 (226)
101 TIGR02928 orc1/cdc6 family rep 41.6 5E+02 0.011 28.5 14.1 147 26-184 192-350 (365)
102 PRK08727 hypothetical protein; 37.7 1.5E+02 0.0032 30.4 8.3 68 5-76 125-201 (233)
103 KOG4308 LRR-containing protein 35.1 4.3 9.2E-05 46.3 -3.7 174 283-489 105-304 (478)
104 PRK08084 DNA replication initi 33.2 2E+02 0.0044 29.4 8.5 68 7-78 132-208 (235)
105 KOG3763 mRNA export factor TAP 30.1 23 0.0005 40.0 1.0 36 827-862 216-254 (585)
106 KOG3763 mRNA export factor TAP 29.5 16 0.00034 41.3 -0.4 87 499-589 217-307 (585)
107 PRK06620 hypothetical protein; 29.5 1.7E+02 0.0036 29.5 6.9 66 5-74 112-184 (214)
108 PRK05642 DNA replication initi 23.7 3.2E+02 0.0069 27.9 7.9 71 5-79 129-208 (234)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-55 Score=515.75 Aligned_cols=350 Identities=33% Similarity=0.538 Sum_probs=287.3
Q ss_pred CCCcEEEEEcCChHHHhh-cCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhh
Q 040304 4 APGSRIIVTTRSRDVASK-MGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGL 82 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~ 82 (1000)
.+||||++|||++.||.. |++...+++++|..+|||+||++.||..... .++.++++|++|+++|+|||||++++|+.
T Consensus 287 ~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ 365 (889)
T KOG4658|consen 287 ENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGL 365 (889)
T ss_pred cCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 478999999999999999 8888899999999999999999999876432 33459999999999999999999999999
Q ss_pred hccCCcHHHHHHHhhhccccCCC-----CCCchHHHHHhhccCchhHHHHhhhhcccCCCCCCChHHHHHHHHHcCCCcc
Q 040304 83 LGSKQRVDEWRAILDSKIWDLED-----ETEVPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGLIQQ 157 (1000)
Q Consensus 83 L~~~~~~~~w~~~l~~~~~~~~~-----~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~ 157 (1000)
|+.|++.++|+++.+...+.... .+.++.+|++|||.||++.|.||+|||+||+||.|+++.++.+|+||||+.+
T Consensus 366 ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~ 445 (889)
T KOG4658|consen 366 LACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDP 445 (889)
T ss_pred hcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCc
Confidence 99999999999999876555221 2379999999999999889999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhcccccccC--CCCCeEEEchHHHHHHHHhhc-----cceeeecC--cccccccccccccc
Q 040304 158 SKDRKQADDLGSEYFHDLLSRSLFQKSS--NSGSKFVMHDLVHDLAQWASG-----ETCFRLDD--QFSADRQSNVFEKV 228 (1000)
Q Consensus 158 ~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~~mhdlv~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~ 228 (1000)
.+.+..+++.|+.|+.+||+++|+...+ .....|+|||+||+||.++++ ++...... .....+....+..+
T Consensus 446 ~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~ 525 (889)
T KOG4658|consen 446 LDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSV 525 (889)
T ss_pred cccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhhe
Confidence 7778899999999999999999999865 234689999999999999999 44332222 11112333445678
Q ss_pred eEEEEEecCCCCCCCccccccccccccccccCccccccccccccccCCCCCCCchhhhhhhcCCCcceEEEcCCcc-ccc
Q 040304 229 RHSSYVRSGDCDGMGVRCDGMNKFKVLDKVENLRTFLPIFVEECFFSPAGYISPMVISDLLPKCKKLRVLSLGRYR-ISE 307 (1000)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~ 307 (1000)
|++++..+..+. .......++|++|.+..... ....+...+|..++.||+|||++|. +.+
T Consensus 526 rr~s~~~~~~~~-----------~~~~~~~~~L~tLll~~n~~--------~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 526 RRMSLMNNKIEH-----------IAGSSENPKLRTLLLQRNSD--------WLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred eEEEEeccchhh-----------ccCCCCCCccceEEEeecch--------hhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 888888765321 11222334678876654321 1234456678889999999999775 678
Q ss_pred ccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCc
Q 040304 308 VPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 308 lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~ 373 (1000)
+|++++.|-+||||+|+++.+..+|..+++|..|.+||+..+.....+|..+..|++||+|.+...
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 999999999999999999999999999999999999999998867777776777999999998765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-51 Score=514.26 Aligned_cols=355 Identities=20% Similarity=0.253 Sum_probs=266.6
Q ss_pred CCCcEEEEEcCChHHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhhh
Q 040304 4 APGSRIIVTTRSRDVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 83 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~L 83 (1000)
++||+||||||+++++..+++.++|+|+.|++++||+||+++||+...+ .+++.+++++|+++|+|+||||+++|++|
T Consensus 322 ~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L 399 (1153)
T PLN03210 322 GSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYL 399 (1153)
T ss_pred CCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 6899999999999999988888899999999999999999999976533 35789999999999999999999999999
Q ss_pred ccCCcHHHHHHHhhhccccCCCCCCchHHHHHhhccCch-hHHHHhhhhcccCCCCCCChHHHHHHHHHcCCCccCcccc
Q 040304 84 GSKQRVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPS-HLKRCFAYCAILPKDYEFQEEELVLLWIAEGLIQQSKDRK 162 (1000)
Q Consensus 84 ~~~~~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~ 162 (1000)
+++ +.++|++++++..... ..++..+|++||++|++ ..|.||+++|+||.++.+ +.+..|.+.+.+.
T Consensus 400 ~~k-~~~~W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------ 467 (1153)
T PLN03210 400 RGR-DKEDWMDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------ 467 (1153)
T ss_pred cCC-CHHHHHHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------
Confidence 987 6799999998854432 23799999999999987 499999999999988654 3466777766542
Q ss_pred hHHHHHHHHHHHHHhcccccccCCCCCeEEEchHHHHHHHHhhccceeeecCc---ccccc------cccccccceEEEE
Q 040304 163 QADDLGSEYFHDLLSRSLFQKSSNSGSKFVMHDLVHDLAQWASGETCFRLDDQ---FSADR------QSNVFEKVRHSSY 233 (1000)
Q Consensus 163 ~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~mhdlv~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~ 233 (1000)
++..++.|++++|++... .+++|||++|+||+++++++.-..... +.... .....+.++.+++
T Consensus 468 -----~~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l 539 (1153)
T PLN03210 468 -----VNIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITL 539 (1153)
T ss_pred -----chhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEe
Confidence 223488999999998753 379999999999999997763110000 00000 0011123444444
Q ss_pred EecCCCCCCCccccccccccccccccCccccccccccccccCCCCCCCchhhhhhhcCC-CcceEEEcCCcccccccccc
Q 040304 234 VRSGDCDGMGVRCDGMNKFKVLDKVENLRTFLPIFVEECFFSPAGYISPMVISDLLPKC-KKLRVLSLGRYRISEVPTSI 312 (1000)
Q Consensus 234 ~~~~~~~~~~v~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~lp~~~ 312 (1000)
..... . .......++..|.+|+.|.+..... ...... ...+|..|..+ ..||.|++.++.++.+|..|
T Consensus 540 ~~~~~------~-~~~i~~~aF~~m~~L~~L~~~~~~~---~~~~~~-~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f 608 (1153)
T PLN03210 540 DIDEI------D-ELHIHENAFKGMRNLLFLKFYTKKW---DQKKEV-RWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF 608 (1153)
T ss_pred ccCcc------c-eeeecHHHHhcCccccEEEEecccc---cccccc-eeecCcchhhcCcccEEEEecCCCCCCCCCcC
Confidence 32220 0 0011223466788888876533210 000011 11123334444 46999999999999999887
Q ss_pred cCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCccccccccccccCCcccCcc
Q 040304 313 GCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 313 ~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
...+|++|+|++|.+..+|..+..+++|++|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+.|
T Consensus 609 -~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred -CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 57899999999999999999999999999999999887888886 8889999999999998888899888888888777
Q ss_pred C
Q 040304 393 T 393 (1000)
Q Consensus 393 ~ 393 (1000)
+
T Consensus 687 ~ 687 (1153)
T PLN03210 687 D 687 (1153)
T ss_pred e
Confidence 3
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-41 Score=423.88 Aligned_cols=526 Identities=20% Similarity=0.225 Sum_probs=291.1
Q ss_pred cCCCCCCCccccccccccccccccCccccccccccccccCCCCCCCchhhhhhhcCCCcceEEEcCCcccc-cccccc-c
Q 040304 236 SGDCDGMGVRCDGMNKFKVLDKVENLRTFLPIFVEECFFSPAGYISPMVISDLLPKCKKLRVLSLGRYRIS-EVPTSI-G 313 (1000)
Q Consensus 236 ~~~~~~~~v~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~-~ 313 (1000)
.++|.|.||.|.....+. .+.+ .+ +.....++..|..+++|++|+|++|.+. .+|..+ .
T Consensus 55 ~~~c~w~gv~c~~~~~v~---------~L~L---~~-------~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~ 115 (968)
T PLN00113 55 ADVCLWQGITCNNSSRVV---------SIDL---SG-------KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT 115 (968)
T ss_pred CCCCcCcceecCCCCcEE---------EEEe---cC-------CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc
Confidence 468999999997543222 2211 11 1112234567889999999999999987 688765 4
Q ss_pred CCCCccEeecCCCccc-ccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCccccccccccccCCcccCcc
Q 040304 314 CLKHLRYLNFSESWIK-CLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 314 ~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
.+++|++|+|++|.+. .+|. +.+++|++|+|++|.+.+.+|..++++++|++|++++|...+.+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 8999999999999886 4553 578999999999999878899999999999999999996667888888888888888
Q ss_pred CceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecCCCCCCcchHHHHHHHhhcC
Q 040304 393 TNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLK 472 (1000)
Q Consensus 393 ~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 472 (1000)
+...+ .+... ....+.
T Consensus 194 ~L~~n------------------------~l~~~----------------------------------------~p~~l~ 209 (968)
T PLN00113 194 TLASN------------------------QLVGQ----------------------------------------IPRELG 209 (968)
T ss_pred eccCC------------------------CCcCc----------------------------------------CChHHc
Confidence 43211 00000 001112
Q ss_pred CCCCcceEEEeeeCCC-CCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEEeecccceeecccccCCCCCC
Q 040304 473 PHGNIKRLVINSYGGT-RFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTIVRMSALKGIGSEINGECCSK 550 (1000)
Q Consensus 473 ~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 550 (1000)
.+++|+.|+++++... .+|..+.. +++|++|++++|.+.+.+| .++.+++|++|++++|...+.++..+.
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~------ 281 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEIGG--LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF------ 281 (968)
T ss_pred CcCCccEEECcCCccCCcCChhHhc--CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh------
Confidence 2233333333333322 23444332 4555555555555444444 444555555555555443322222221
Q ss_pred CCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCccEEEEeccccccccCCCCCcceE
Q 040304 551 PFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCK 630 (1000)
Q Consensus 551 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~ 630 (1000)
.+++|+.|++++|.. .+..+..+..+++|++|++++ +.+.+.+|.. +..+++|+.
T Consensus 282 ~l~~L~~L~Ls~n~l------~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~------------------~~~l~~L~~ 336 (968)
T PLN00113 282 SLQKLISLDLSDNSL------SGEIPELVIQLQNLEILHLFS-NNFTGKIPVA------------------LTSLPRLQV 336 (968)
T ss_pred hccCcCEEECcCCee------ccCCChhHcCCCCCcEEECCC-CccCCcCChh------------------HhcCCCCCE
Confidence 134444444444432 111222233344444444444 2232222221 112233333
Q ss_pred EEEcCCCCcccccccCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCCcceeEeccCCCccccccCCCCC
Q 040304 631 LKIDGCKRLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLP 710 (1000)
Q Consensus 631 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 710 (1000)
|++++|. .....+ ..+..+++|+.|++++|.....+|......
T Consensus 337 L~L~~n~----------------------l~~~~p---------------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 337 LQLWSNK----------------------FSGEIP---------------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred EECcCCC----------------------CcCcCC---------------hHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 3333332 111111 001233556666666666655555554555
Q ss_pred ccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEee
Q 040304 711 VTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISI 790 (1000)
Q Consensus 711 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 790 (1000)
++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 67777777777666666766777777777777776665566666666777777777777666666666666777777777
Q ss_pred cCCCCccccCCCCCCCCCceEeeccccCccCCCCC--CCccccceeccccCCCccccCCC-CCCCCccEEEeccccCccc
Q 040304 791 EGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPT--GKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKP 867 (1000)
Q Consensus 791 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~ 867 (1000)
++|.....+|.....++|+.|++++|. +++.+|. .++++|++|++++|...+.+|.. ..+++|++|+|++|.+.+.
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCc-cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence 776555555544333455555555543 2222332 24555555555555544444444 4455555555555555554
Q ss_pred ccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccC
Q 040304 868 LVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLS 921 (1000)
Q Consensus 868 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 921 (1000)
+|. .+..+++|+.|++++|.....+|. .+..+++|+.|++++|+....+|
T Consensus 539 ~p~-~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 539 IPA-SFSEMPVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCh-hHhCcccCCEEECCCCcccccCCh---hHhcCcccCEEeccCCcceeeCC
Confidence 443 355555555555555544444443 11223444444444443333333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-38 Score=397.16 Aligned_cols=531 Identities=17% Similarity=0.155 Sum_probs=380.4
Q ss_pred CcceEEEcCCcccc-cccccccCCCCccEeecCCCccc-ccchhhh-ccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 293 KKLRVLSLGRYRIS-EVPTSIGCLKHLRYLNFSESWIK-CLPEAIT-SLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
.+++.|+|++|.+. .+|..|..+++|++|+|++|.+. .+|..+. .+++|++|+|++|.+.+.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 47899999999988 45788999999999999999987 7898754 999999999999998888885 5689999999
Q ss_pred ecCccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEE
Q 040304 370 IDGANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLE 449 (1000)
Q Consensus 370 L~~~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 449 (1000)
+++|...+.+|..++++++|++|+...+ .+..
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n------------------------~l~~------------------------ 178 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGN------------------------VLVG------------------------ 178 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccC------------------------cccc------------------------
Confidence 9999666688888888888888743111 0000
Q ss_pred eecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCC-CCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCe
Q 040304 450 WRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGT-RFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKD 527 (1000)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~ 527 (1000)
.....+..+++|+.|+++++... .+|..+.. +++|++|++++|.+.+.+| .++.+++|++
T Consensus 179 ----------------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 179 ----------------KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ--MKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred ----------------cCChhhhhCcCCCeeeccCCCCcCcCChHHcC--cCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 00111223344445555444432 24444442 5666666666666655555 4556666666
Q ss_pred EEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCc
Q 040304 528 LTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSL 607 (1000)
Q Consensus 528 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L 607 (1000)
|++++|.....++..+. .+++|+.|++++|... +..+..+..+++|++|++++| .+.+.+|..
T Consensus 241 L~L~~n~l~~~~p~~l~------~l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~---- 303 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLG------NLKNLQYLFLYQNKLS------GPIPPSIFSLQKLISLDLSDN-SLSGEIPEL---- 303 (968)
T ss_pred EECcCceeccccChhHh------CCCCCCEEECcCCeee------ccCchhHhhccCcCEEECcCC-eeccCCChh----
Confidence 66666554333333332 2455555555555431 222333344555555555552 344344432
Q ss_pred cEEEEeccccccccCCCCCcceEEEEcCCCCcccccccCCCCcceEEecCCccccccccccccccceeEEecCCCCCccC
Q 040304 608 EKIVITECRQLVISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCL 687 (1000)
Q Consensus 608 ~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~ 687 (1000)
+..+++|+.|++++|... ...+ ..+..++
T Consensus 304 --------------~~~l~~L~~L~l~~n~~~----------------------~~~~---------------~~~~~l~ 332 (968)
T PLN00113 304 --------------VIQLQNLEILHLFSNNFT----------------------GKIP---------------VALTSLP 332 (968)
T ss_pred --------------HcCCCCCcEEECCCCccC----------------------CcCC---------------hhHhcCC
Confidence 122334444444444311 1110 0122456
Q ss_pred CcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeec
Q 040304 688 DLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILIS 767 (1000)
Q Consensus 688 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 767 (1000)
+|+.|++++|.....+|......++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 78888888888777777666667899999999998777889888889999999999988777888888889999999999
Q ss_pred cccccccccccccCCCCcceEeecCCCCccccCCC-CCCCCCceEeeccccCccCCCCCC-CccccceeccccCCCcccc
Q 040304 768 SCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPED-ALPSSVVDVSIEECDKLKGPLPTG-KISSLQELSLKKCPGIVFF 845 (1000)
Q Consensus 768 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~-~l~~L~~L~l~~~~~~~~~ 845 (1000)
+|+..+.+|..+..++.|+.|++++|.....++.. ...++|+.|++++|..... +|.. ..++|++|++++|...+.+
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG-LPDSFGSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee-cCcccccccceEEECcCCccCCcc
Confidence 99888888989999999999999997544444432 2347899999999875443 5443 6789999999999877777
Q ss_pred CCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccc
Q 040304 846 PEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKG 924 (1000)
Q Consensus 846 ~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 924 (1000)
|.. ..+++|+.|+|++|.+.+.+|. .+..+++|++|++++|...+.+|.. +..+++|+.|++++|.....+| ..
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p-~~ 566 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPAS---FSEMPVLSQLDLSQNQLSGEIP-KN 566 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcccccCChh---HhCcccCCEEECCCCcccccCC-hh
Confidence 766 7789999999999999987776 6889999999999998776677752 3466899999999996555677 67
Q ss_pred cCCCCccccccccCCCCCcCCCCCCCCCCcceEeecCCchh
Q 040304 925 FHYLVSLESLEVFSCPNFTSFPEAGFPSSLLSLKIIGCPLL 965 (1000)
Q Consensus 925 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~l 965 (1000)
+..+++|+.|++++|+..+.+|..+.+.++....+.++|.+
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 88899999999999998889998766667777777777754
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=5.5e-29 Score=276.00 Aligned_cols=263 Identities=22% Similarity=0.238 Sum_probs=206.0
Q ss_pred CCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceee
Q 040304 687 LDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILI 766 (1000)
Q Consensus 687 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l 766 (1000)
++|+.|...+|...+... ...|.+|++++++.+ .+..+|.....+.+|+.+...+ +.+..+|.....+++|+.|.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV--HPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeecc--ccccccceeeecchh-hhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHh
Confidence 556677777776663222 245678999999887 4667788889999999999988 556889999999999999999
Q ss_pred ccccccccccccccCCCCcceEeecCCCCccccCCCCCC---CCCceEeeccccCccCC-CCCCCccccceeccccCCCc
Q 040304 767 SSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALP---SSVVDVSIEECDKLKGP-LPTGKISSLQELSLKKCPGI 842 (1000)
Q Consensus 767 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~---~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~~ 842 (1000)
.+| .+..+|.....+++|+.|++.. +++.++|...+. .++..++.+.+..-+.+ .....++.|+.|.+.+|...
T Consensus 295 ~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhh-hhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 985 6889998999999999999999 788888885544 24556665543322221 11227889999999999855
Q ss_pred cc-cCCCCCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccC
Q 040304 843 VF-FPEEGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLS 921 (1000)
Q Consensus 843 ~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 921 (1000)
.. +|.......|+.|+|++|++.. +|+..+.++..|++|++|+| +++.+|+.. ..++.|++|...+| .+..+|
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~tv---a~~~~L~tL~ahsN-~l~~fP 446 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGN-KLTTLPDTV---ANLGRLHTLRAHSN-QLLSFP 446 (1081)
T ss_pred ccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccc-hhhhhhHHH---HhhhhhHHHhhcCC-ceeech
Confidence 43 4444788999999999999866 88888999999999999995 788888633 35689999999998 899998
Q ss_pred ccccCCCCccccccccCCCCCcCCC-CCCCC-CCcceEeecCCch
Q 040304 922 SKGFHYLVSLESLEVFSCPNFTSFP-EAGFP-SSLLSLKIIGCPL 964 (1000)
Q Consensus 922 ~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~-~sL~~L~l~~c~~ 964 (1000)
.+..+++|+.+|++.| .+..+. ....+ ++|+.||++||+.
T Consensus 447 --e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 --ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred --hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 7888999999999887 565543 22345 8999999999985
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=3e-29 Score=252.11 Aligned_cols=172 Identities=19% Similarity=0.295 Sum_probs=118.6
Q ss_pred CCCCcceEeecCCCCccccCCCCCCC----CCceEeeccccCccCCCCCC--CccccceeccccCCCccccCCC-CCCCC
Q 040304 781 NLSHLHRISIEGCHNLVSLPEDALPS----SVVDVSIEECDKLKGPLPTG--KISSLQELSLKKCPGIVFFPEE-GLSTN 853 (1000)
Q Consensus 781 ~l~~L~~L~l~~c~~l~~l~~~~~~~----~L~~L~l~~~~~l~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~-~~l~~ 853 (1000)
..-+.+.|++++ ..++.+|...|.. -...++++++. +.. +|.+ .+..+.+.-+..+..+..+|.. ..+++
T Consensus 360 ~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNq-L~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 360 AIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCE-LPKRLVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred hhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccch-Hhh-hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 356778888888 7778887765542 24455666533 332 4443 4555555444455556666655 77899
Q ss_pred ccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCcccc
Q 040304 854 LTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLES 933 (1000)
Q Consensus 854 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~ 933 (1000)
|+.|++++|.+.. +|. .++.+..|+.|+++.| ....+|+.- ..+..|+.+-.+++ .+..+++.+++++.+|..
T Consensus 437 Lt~L~L~NN~Ln~-LP~-e~~~lv~Lq~LnlS~N-rFr~lP~~~---y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 437 LTFLDLSNNLLND-LPE-EMGSLVRLQTLNLSFN-RFRMLPECL---YELQTLETLLASNN-QIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred ceeeecccchhhh-cch-hhhhhhhhheeccccc-ccccchHHH---hhHHHHHHHHhccc-cccccChHHhhhhhhcce
Confidence 9999999887665 776 4778888999999987 444555411 12234555555555 888888778899999999
Q ss_pred ccccCCCCCcCCCC-CCCCCCcceEeecCCc
Q 040304 934 LEVFSCPNFTSFPE-AGFPSSLLSLKIIGCP 963 (1000)
Q Consensus 934 L~l~~c~~l~~l~~-~~~~~sL~~L~l~~c~ 963 (1000)
||+.+| .+..+|. .+.+++|++|+++|+|
T Consensus 510 LDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eccCCC-chhhCChhhccccceeEEEecCCc
Confidence 999888 6778874 4568999999999987
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=5.7e-29 Score=250.13 Aligned_cols=245 Identities=27% Similarity=0.335 Sum_probs=180.1
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+.++..|.+|++++|.+..+|++++.+..++.|+.++|.+.++|+.++++.+|+.|+.++|. ..++|++|+.+..|+.|
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhh
Confidence 56777888999999999999988998999999999999999999999999999999999887 77788888888899998
Q ss_pred eecCccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEE
Q 040304 369 DIDGANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKL 448 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 448 (1000)
+..+| .+..+|.+++.+.+|..|...+.. +....
T Consensus 143 ~~~~N-~i~slp~~~~~~~~l~~l~~~~n~------------------------l~~l~--------------------- 176 (565)
T KOG0472|consen 143 DATNN-QISSLPEDMVNLSKLSKLDLEGNK------------------------LKALP--------------------- 176 (565)
T ss_pred hcccc-ccccCchHHHHHHHHHHhhccccc------------------------hhhCC---------------------
Confidence 88877 678888888888777766321110 00000
Q ss_pred EeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeE
Q 040304 449 EWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDL 528 (1000)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L 528 (1000)
+....+..|++|+...+....+|+.++. +.+|..|+|..|++. .+|.|+.+..|++|
T Consensus 177 --------------------~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki~-~lPef~gcs~L~El 233 (565)
T KOG0472|consen 177 --------------------ENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKIR-FLPEFPGCSLLKEL 233 (565)
T ss_pred --------------------HHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhcccc-cCCCCCccHHHHHH
Confidence 0000123455667777777888988885 889999999999864 56788889999999
Q ss_pred EEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCcc
Q 040304 529 TIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLE 608 (1000)
Q Consensus 529 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 608 (1000)
+++.| .++.++.+... .++++..|++.+|+. ...|+.+..+.+|++||+++ +.++ .+|..+++
T Consensus 234 h~g~N-~i~~lpae~~~-----~L~~l~vLDLRdNkl-------ke~Pde~clLrsL~rLDlSN-N~is-~Lp~sLgn-- 296 (565)
T KOG0472|consen 234 HVGEN-QIEMLPAEHLK-----HLNSLLVLDLRDNKL-------KEVPDEICLLRSLERLDLSN-NDIS-SLPYSLGN-- 296 (565)
T ss_pred Hhccc-HHHhhHHHHhc-----ccccceeeecccccc-------ccCchHHHHhhhhhhhcccC-Cccc-cCCccccc--
Confidence 98876 46666655442 378888888888875 23344445677788888887 6776 66654443
Q ss_pred EEEEeccccccccCCCCCcceEEEEcCCC
Q 040304 609 KIVITECRQLVISLPSVPALCKLKIDGCK 637 (1000)
Q Consensus 609 ~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 637 (1000)
+ +|+.|.+.||+
T Consensus 297 ----------------l-hL~~L~leGNP 308 (565)
T KOG0472|consen 297 ----------------L-HLKFLALEGNP 308 (565)
T ss_pred ----------------c-eeeehhhcCCc
Confidence 3 45666777776
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-25 Score=236.11 Aligned_cols=200 Identities=22% Similarity=0.246 Sum_probs=144.1
Q ss_pred cceEEEcCCcccccc-cccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 294 KLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
..+.||+++|.+..+ +..|.++++|+.+++..|.++.+|...+...+|+.|+|.+|.+...-.+++..++.||.|||+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 457899999999877 6678899999999999999999998777778899999999874444445688888999999998
Q ss_pred cccccccccc-ccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEee
Q 040304 373 ANRLCELPLG-MKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWR 451 (1000)
Q Consensus 373 ~~~l~~ip~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 451 (1000)
| .+.++|.. +.+
T Consensus 159 N-~is~i~~~sfp~------------------------------------------------------------------ 171 (873)
T KOG4194|consen 159 N-LISEIPKPSFPA------------------------------------------------------------------ 171 (873)
T ss_pred c-hhhcccCCCCCC------------------------------------------------------------------
Confidence 8 56666532 211
Q ss_pred cCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEE
Q 040304 452 ARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTI 530 (1000)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L 530 (1000)
..++++|++++|.++.+-..-++ .+.+|.+|.|+.|.++...+ .|.++++|+.|+|
T Consensus 172 ----------------------~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 172 ----------------------KVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred ----------------------CCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 23455556666666555443333 47789999999998775544 6778999999999
Q ss_pred eecccceee-cccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccc
Q 040304 531 VRMSALKGI-GSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLS 597 (1000)
Q Consensus 531 ~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 597 (1000)
..|.. +.+ +..| .++++|+.|.+..|.. ....++.|..+.++++|+|.. |+++
T Consensus 229 nrN~i-rive~ltF------qgL~Sl~nlklqrN~I------~kL~DG~Fy~l~kme~l~L~~-N~l~ 282 (873)
T KOG4194|consen 229 NRNRI-RIVEGLTF------QGLPSLQNLKLQRNDI------SKLDDGAFYGLEKMEHLNLET-NRLQ 282 (873)
T ss_pred cccce-eeehhhhh------cCchhhhhhhhhhcCc------ccccCcceeeecccceeeccc-chhh
Confidence 88853 333 4344 4488888888888776 344455666777777777777 5554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.6e-25 Score=230.96 Aligned_cols=339 Identities=16% Similarity=0.140 Sum_probs=211.8
Q ss_pred CCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCcc
Q 040304 499 FSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDE 577 (1000)
Q Consensus 499 ~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 577 (1000)
++.-+.|++++|.+...-+ .+.++++|+++++.+|. +..++... ....+|+.|+|.+|.+ .....+
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~------~~sghl~~L~L~~N~I------~sv~se 143 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFG------HESGHLEKLDLRHNLI------SSVTSE 143 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccccc------ccccceeEEeeecccc------ccccHH
Confidence 4567789999998866444 68899999999998885 55555432 1246799999999987 556667
Q ss_pred ccccCCccceEEecCCcccccCCCCCCCCccEEEEeccccccccCCCCCcceEEEEcCCCCcc--cccccCCCCcceEEe
Q 040304 578 HVQAFPRLQKLFIHKCPKLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCKRLV--CDGLSESKSLNKMTL 655 (1000)
Q Consensus 578 ~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l 655 (1000)
.+..+|.|+.|||+. |.++ .+|.. .+|.-+++++|++++|.... ...|.++.+|..|.+
T Consensus 144 ~L~~l~alrslDLSr-N~is-~i~~~-----------------sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 144 ELSALPALRSLDLSR-NLIS-EIPKP-----------------SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred HHHhHhhhhhhhhhh-chhh-cccCC-----------------CCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 778899999999999 6776 66632 44555677888888876433 335666666666666
Q ss_pred cCCccccccccccccccceeEEecCCCCCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCcc
Q 040304 656 WNISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPV 735 (1000)
Q Consensus 656 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 735 (1000)
+. ++++.+|...|. .+++|+.|++..|..-..-+..+..+++|+.|.+..|..-+--.+.|-.+.
T Consensus 205 sr-NrittLp~r~Fk--------------~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 205 SR-NRITTLPQRSFK--------------RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred cc-CcccccCHHHhh--------------hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec
Confidence 65 344444422222 235555555555544333344445556666666666654444445566677
Q ss_pred ccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCC--CCCceEee
Q 040304 736 AIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALP--SSVVDVSI 813 (1000)
Q Consensus 736 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l 813 (1000)
++++|+|..+....--..+.+++++|+.|++|+|..-..-+.++..+++|++|+|++ +.++.++++.+- ..|++|++
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcc
Confidence 778888877543333355667778888888888755554566778888888888887 667777665543 45555555
Q ss_pred ccccCccCCCC---CCCccccceeccccCCCccccCCC----CCCCCccEEEeccccCcccccccccccCCccceEEECC
Q 040304 814 EECDKLKGPLP---TGKISSLQELSLKKCPGIVFFPEE----GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCING 886 (1000)
Q Consensus 814 ~~~~~l~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 886 (1000)
+++. ++. +. +..+.+|++|||++|.....+.+. ..+++|+.|++.||++.. ++..+|.++.+|+.|++.+
T Consensus 349 s~Ns-i~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 349 SHNS-IDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred cccc-hHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhhhccCcccceecCCC
Confidence 5522 222 11 124556666666665543333322 225566666666665543 5555566666666666665
Q ss_pred CC
Q 040304 887 CS 888 (1000)
Q Consensus 887 ~~ 888 (1000)
|.
T Consensus 426 Na 427 (873)
T KOG4194|consen 426 NA 427 (873)
T ss_pred Cc
Confidence 43
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1e-24 Score=242.36 Aligned_cols=106 Identities=35% Similarity=0.505 Sum_probs=92.0
Q ss_pred hhhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccc
Q 040304 285 ISDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVN 364 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 364 (1000)
|-++..+..+|++||+++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+|. +..+|.++..+++
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKN 115 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhc
Confidence 334555666799999999999999999999999999999999999999999999999999999887 8889999999999
Q ss_pred ccceeecCccccccccccccCCcccCcc
Q 040304 365 LYHLDIDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 365 L~~L~L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
|+.|++++| ....+|.-+..++.+..+
T Consensus 116 l~~LdlS~N-~f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 116 LQYLDLSFN-HFGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred ccccccchh-ccCCCchhHHhhhHHHHH
Confidence 999999999 678888877777666555
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=3.1e-21 Score=242.73 Aligned_cols=243 Identities=19% Similarity=0.318 Sum_probs=105.1
Q ss_pred cCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCccccccee
Q 040304 686 CLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSIL 765 (1000)
Q Consensus 686 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~ 765 (1000)
+++|+.|++++|..+..+|.....+++|+.|++++|..++.+|... .+++|+.|++++|..+..+|.. .++|+.|+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~ 731 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLD 731 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeee
Confidence 3444455555554444444444444455555555555555544433 3445555555555544444422 13455555
Q ss_pred eccccccccccccccCCCCcceEeecCCCCcc------ccCC--CCCCCCCceEeeccccCccCCCCC--CCccccceec
Q 040304 766 ISSCDNLKSLPIGLNNLSHLHRISIEGCHNLV------SLPE--DALPSSVVDVSIEECDKLKGPLPT--GKISSLQELS 835 (1000)
Q Consensus 766 l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~------~l~~--~~~~~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~ 835 (1000)
++++. ++.+|..+ .+++|+.|.+.+|.... .++. ...+++|+.|++++|+.+.. +|. +++++|+.|+
T Consensus 732 L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 732 LDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLE 808 (1153)
T ss_pred cCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEE
Confidence 55432 33444322 34445555444432110 0000 01123444444444443333 222 2444455555
Q ss_pred cccCCCccccCCCCCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCC
Q 040304 836 LKKCPGIVFFPEEGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFP 915 (1000)
Q Consensus 836 l~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 915 (1000)
+++|..++.+|....+++|+.|++++|.....+|. ..++|+.|++++| .++.+|.. +..+++|+.|++.+|+
T Consensus 809 Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n-~i~~iP~s---i~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRT-GIEEVPWW---IEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CCCCCCcCeeCCCCCccccCEEECCCCCccccccc----cccccCEeECCCC-CCccChHH---HhcCCCCCEEECCCCC
Confidence 54444444444443444445555554444333322 1234444444442 33444431 1233445555555554
Q ss_pred CccccCccccCCCCccccccccCCCCCcC
Q 040304 916 KLERLSSKGFHYLVSLESLEVFSCPNFTS 944 (1000)
Q Consensus 916 ~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 944 (1000)
+++.++ .....+++|+.+++++|+.++.
T Consensus 881 ~L~~l~-~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 881 NLQRVS-LNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CcCccC-cccccccCCCeeecCCCccccc
Confidence 444444 2334444444555555544443
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.4e-24 Score=229.61 Aligned_cols=370 Identities=19% Similarity=0.222 Sum_probs=244.0
Q ss_pred CCcceEEEcCCcccc--cccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 292 CKKLRVLSLGRYRIS--EVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
++..|-.|+++|.++ .+|.....++.++.|.|..+.+..+|+.++.|.+|++|.+++|+ +..+...+..|++||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHh
Confidence 445666777777766 55777777777777777777777777777777777777777776 444444566777777777
Q ss_pred ecCcccc-ccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEE
Q 040304 370 IDGANRL-CELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKL 448 (1000)
Q Consensus 370 L~~~~~l-~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 448 (1000)
+..|+.. ..+|.++.+|..|..|+ ++.+.+..+..
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lD------------------------LShNqL~EvP~-------------------- 120 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILD------------------------LSHNQLREVPT-------------------- 120 (1255)
T ss_pred hhccccccCCCCchhcccccceeee------------------------cchhhhhhcch--------------------
Confidence 7666321 35677777776666663 22222222211
Q ss_pred EeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeE
Q 040304 449 EWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDL 528 (1000)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L 528 (1000)
.+..-.++-.|+++++++.++|..+.. .++.|-.|+|++|.+....|.+..+..|++|
T Consensus 121 ---------------------~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 121 ---------------------NLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ---------------------hhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 111122344667777778888876554 4788889999999877666688899999999
Q ss_pred EEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCcc
Q 040304 529 TIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLE 608 (1000)
Q Consensus 529 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 608 (1000)
.|++|+....--... ..+++|+.|.+++.+..- ...|.++..+.+|..++++. |.+. .+|..+
T Consensus 179 ~Ls~NPL~hfQLrQL------PsmtsL~vLhms~TqRTl-----~N~Ptsld~l~NL~dvDlS~-N~Lp-~vPecl---- 241 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQL------PSMTSLSVLHMSNTQRTL-----DNIPTSLDDLHNLRDVDLSE-NNLP-IVPECL---- 241 (1255)
T ss_pred hcCCChhhHHHHhcC------ccchhhhhhhcccccchh-----hcCCCchhhhhhhhhccccc-cCCC-cchHHH----
Confidence 999987532221111 225566667776655431 23345557788999999987 6666 566432
Q ss_pred EEEEeccccccccCCCCCcceEEEEcCCCCcccccccCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCC
Q 040304 609 KIVITECRQLVISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLD 688 (1000)
Q Consensus 609 ~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~ 688 (1000)
..+++|+.|++++|.... |.+. . ....+
T Consensus 242 --------------y~l~~LrrLNLS~N~ite------------L~~~----~----------------------~~W~~ 269 (1255)
T KOG0444|consen 242 --------------YKLRNLRRLNLSGNKITE------------LNMT----E----------------------GEWEN 269 (1255)
T ss_pred --------------hhhhhhheeccCcCceee------------eecc----H----------------------HHHhh
Confidence 223555556666654211 1110 0 12235
Q ss_pred cceeEeccCCCccccccCCCCCccccEEEEecccC-ceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeec
Q 040304 689 LESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYN-FKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILIS 767 (1000)
Q Consensus 689 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 767 (1000)
|++|+++.|+ ++.+|.....+++|++|.+.+|.. .+.+|++++.+.+|+.+..++ +.++-+|.+...+..|+.|.++
T Consensus 270 lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 270 LETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccc
Confidence 6666666654 345666666677888887766643 346888888888888888776 6788889888888999999888
Q ss_pred cccccccccccccCCCCcceEeecCCCCccccC
Q 040304 768 SCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLP 800 (1000)
Q Consensus 768 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 800 (1000)
.| .+-++|.++.-++.|+.||+..++++.--|
T Consensus 348 ~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 348 HN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 75 566788888889999999999988887554
No 13
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.87 E-value=4.5e-23 Score=221.75 Aligned_cols=154 Identities=38% Similarity=0.658 Sum_probs=124.6
Q ss_pred CCCcEEEEEcCChHHHhhcCC-CceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhh
Q 040304 4 APGSRIIVTTRSRDVASKMGP-VKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGL 82 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~~~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~ 82 (1000)
..|||||||||+..++..++. ...|++++|+.+||++||++.++... ....+..++.+++|+++|+|+||||+++|++
T Consensus 127 ~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~ 205 (287)
T PF00931_consen 127 SSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASY 205 (287)
T ss_dssp HSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 458999999999999987754 57899999999999999999998655 2233456789999999999999999999999
Q ss_pred hccCCcHHHHHHHhhhccccCC----CCCCchHHHHHhhccCchhHHHHhhhhcccCCCCCCChHHHHHHHHHcCCCccC
Q 040304 83 LGSKQRVDEWRAILDSKIWDLE----DETEVPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGLIQQS 158 (1000)
Q Consensus 83 L~~~~~~~~w~~~l~~~~~~~~----~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~~ 158 (1000)
|+.+.+..+|+.+++....... ....++.++..||+.|+++.|+||+|||+||+++.|+++.++.+|+++||+...
T Consensus 206 l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 206 LRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9777677899998876433332 123799999999999999999999999999999999999999999999999753
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.1e-23 Score=222.81 Aligned_cols=370 Identities=18% Similarity=0.234 Sum_probs=213.9
Q ss_pred CCCCccEeecCCCccc--ccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCccccccccccccCCcccCc
Q 040304 314 CLKHLRYLNFSESWIK--CLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLGMKELKCLRT 391 (1000)
Q Consensus 314 ~l~~L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~i~~L~~L~~ 391 (1000)
-|+-.|=.|+++|.++ ..|.++..++.++-|.|..++ +..+|+.++.|.+|++|.+++| .+..+-..++.|++|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHH
Confidence 4555677788888776 688888888999999888876 7888888989999999999888 45555555555555554
Q ss_pred cCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecCCCCCCcchHHHHHHHhhc
Q 040304 392 LTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRARRDGDSVDEVREKNILDML 471 (1000)
Q Consensus 392 L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 471 (1000)
+.. .-+++
T Consensus 83 v~~------------------------R~N~L------------------------------------------------ 90 (1255)
T KOG0444|consen 83 VIV------------------------RDNNL------------------------------------------------ 90 (1255)
T ss_pred Hhh------------------------hcccc------------------------------------------------
Confidence 411 00000
Q ss_pred CCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeEEEeecccceeecccccCCCCCCC
Q 040304 472 KPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDLTIVRMSALKGIGSEINGECCSKP 551 (1000)
Q Consensus 472 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 551 (1000)
....+|..++. +..|+.|+|++|++.+....+....++-.|+|++|+ ++.++...+
T Consensus 91 --------------KnsGiP~diF~--l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf------- 146 (1255)
T KOG0444|consen 91 --------------KNSGIPTDIFR--LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF------- 146 (1255)
T ss_pred --------------ccCCCCchhcc--cccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-------
Confidence 11236777664 888999999999877655577788888888888774 445443322
Q ss_pred CCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCccEEEEeccccccccCCCCCcceEE
Q 040304 552 FPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCKL 631 (1000)
Q Consensus 552 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L 631 (1000)
..+..|-.|++++ |++. .+|+... .+..|+.|
T Consensus 147 ----------------------------inLtDLLfLDLS~-NrLe-~LPPQ~R------------------RL~~LqtL 178 (1255)
T KOG0444|consen 147 ----------------------------INLTDLLFLDLSN-NRLE-MLPPQIR------------------RLSMLQTL 178 (1255)
T ss_pred ----------------------------HhhHhHhhhcccc-chhh-hcCHHHH------------------HHhhhhhh
Confidence 2344455555655 4554 4553211 12334444
Q ss_pred EEcCCCCcccccccCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCCcceeEeccCCCccccccCCCCCc
Q 040304 632 KIDGCKRLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLPV 711 (1000)
Q Consensus 632 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 711 (1000)
++++|+..- ..+.. +| .++
T Consensus 179 ~Ls~NPL~h---------------------------------------------------fQLrQ------LP----smt 197 (1255)
T KOG0444|consen 179 KLSNNPLNH---------------------------------------------------FQLRQ------LP----SMT 197 (1255)
T ss_pred hcCCChhhH---------------------------------------------------HHHhc------Cc----cch
Confidence 444443100 00000 00 002
Q ss_pred cccEEEEecccC-ceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEee
Q 040304 712 TLKRLEIWCCYN-FKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISI 790 (1000)
Q Consensus 712 ~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 790 (1000)
+|+.|.+++... +..+|.++..+.+|..++++. +++..+|.....+.+|+.|++|+| .++.+........+|+.|++
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNL 275 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcc
Confidence 333333333222 123455455555555555544 334444444444455555555553 33333333334444444444
Q ss_pred cCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCC-ccccCCC-CCCCCccEEEeccccCcccc
Q 040304 791 EGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPG-IVFFPEE-GLSTNLTYLEISGANIYKPL 868 (1000)
Q Consensus 791 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~-~~l~~L~~L~L~~n~~~~~~ 868 (1000)
|. +.++.+|... -.+++|+.|.+.+|.. ..-+|.+ +.+.+|+++..++|.+.- +
T Consensus 276 Sr-NQLt~LP~av----------------------cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-V 331 (1255)
T KOG0444|consen 276 SR-NQLTVLPDAV----------------------CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-V 331 (1255)
T ss_pred cc-chhccchHHH----------------------hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-C
Confidence 44 2333332211 1577788887777753 3446665 778888888887776543 5
Q ss_pred cccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccC
Q 040304 869 VNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLS 921 (1000)
Q Consensus 869 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 921 (1000)
|. ++..|+.|+.|.+++| .+..+|+ ++..++-|..|++.++|+|.--|
T Consensus 332 PE-glcRC~kL~kL~L~~N-rLiTLPe---aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 332 PE-GLCRCVKLQKLKLDHN-RLITLPE---AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ch-hhhhhHHHHHhccccc-ceeechh---hhhhcCCcceeeccCCcCccCCC
Confidence 54 6788888888888875 4555665 44566778888888887776433
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.66 E-value=1.7e-18 Score=175.08 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=96.2
Q ss_pred CCCchhhhhhhcCCCcceEEEcCCcccccc-cccccCCCCccEeecCC-Ccccccchh-hhccCCCcEEeccCCcCcccC
Q 040304 279 YISPMVISDLLPKCKKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSE-SWIKCLPEA-ITSLFNLEILILSDCRLLLKL 355 (1000)
Q Consensus 279 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~-n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~l 355 (1000)
+....+|+.+|..+++||.|||++|.|+.| |.+|..+..|-.|-+.+ |+|+.+|.. |++|..|+.|.+.-|++.-..
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 445778889999999999999999999988 88999999887777666 899999976 999999999999988855555
Q ss_pred ChhhhccccccceeecCccccccccc-cccCCcccCccCc
Q 040304 356 PSSIGNLVNLYHLDIDGANRLCELPL-GMKELKCLRTLTN 394 (1000)
Q Consensus 356 p~~i~~L~~L~~L~L~~~~~l~~ip~-~i~~L~~L~~L~~ 394 (1000)
.+.|..|++|..|.+..| .+..++. .+..+..++++..
T Consensus 157 ~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HHHHHHhhhcchhcccch-hhhhhccccccchhccchHhh
Confidence 567899999999999888 6788887 4888888888754
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=4.2e-16 Score=157.99 Aligned_cols=78 Identities=28% Similarity=0.445 Sum_probs=40.1
Q ss_pred eEEEcCCccccccc-ccccCCCCccEeecCCCccccc-chhhhccCCCcEEeccCCcCcccCChh-hhccccccceeecC
Q 040304 296 RVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLLKLPSS-IGNLVNLYHLDIDG 372 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~ 372 (1000)
..++|..|.|+.|| .+|+.+++||.||||+|+|+.| |..|.+|..|-.|-+-+++.+..+|.. |++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 45555555555553 3455555555555555555554 233555555544444442224455533 55555555555544
Q ss_pred c
Q 040304 373 A 373 (1000)
Q Consensus 373 ~ 373 (1000)
|
T Consensus 150 n 150 (498)
T KOG4237|consen 150 N 150 (498)
T ss_pred h
Confidence 4
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=6.2e-14 Score=163.15 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=63.1
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
..-.+|+|+++.++.+|..+. .+|+.|++++|+++.+|. .+++|++|++++|+ +..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence 456789999999999998776 489999999999999986 35789999999987 5567753 46788888888
Q ss_pred ccccccccc
Q 040304 373 ANRLCELPL 381 (1000)
Q Consensus 373 ~~~l~~ip~ 381 (1000)
| .+..+|.
T Consensus 272 N-~L~~Lp~ 279 (788)
T PRK15387 272 N-PLTHLPA 279 (788)
T ss_pred C-chhhhhh
Confidence 8 4556654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=6.8e-14 Score=162.83 Aligned_cols=74 Identities=26% Similarity=0.360 Sum_probs=31.9
Q ss_pred CccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccc
Q 040304 853 NLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLE 932 (1000)
Q Consensus 853 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~ 932 (1000)
+|+.|++++|.+.. +|. ..++|+.|++++| .+..+|. .+.+|+.|++++| +++.+| ..+..+++|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~----l~s~L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~N-qLt~LP-~sl~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPV----LPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLP-ESLIHLSSET 448 (788)
T ss_pred ccceEEecCCcccC-CCC----cccCCCEEEccCC-cCCCCCc------chhhhhhhhhccC-cccccC-hHHhhccCCC
Confidence 44455555444433 322 1234444555543 2333443 2234444444444 444444 2344444455
Q ss_pred cccccCCC
Q 040304 933 SLEVFSCP 940 (1000)
Q Consensus 933 ~L~l~~c~ 940 (1000)
.|++++|+
T Consensus 449 ~LdLs~N~ 456 (788)
T PRK15387 449 TVNLEGNP 456 (788)
T ss_pred eEECCCCC
Confidence 55554443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.6e-15 Score=135.56 Aligned_cols=102 Identities=33% Similarity=0.409 Sum_probs=83.8
Q ss_pred cCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 290 PKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
..+..++.|-|++|.++.+|+.+..+.+|++|++++|+|+++|.+++.+++|++|+++-|+ +..+|..|+.++.|++||
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence 3456778888999999999888999999999999999999999999999999999999887 778898899999999999
Q ss_pred ecCcccc-ccccccccCCcccCcc
Q 040304 370 IDGANRL-CELPLGMKELKCLRTL 392 (1000)
Q Consensus 370 L~~~~~l-~~ip~~i~~L~~L~~L 392 (1000)
+.+|+.. ..+|..|..|+.|+.|
T Consensus 109 ltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred ccccccccccCCcchhHHHHHHHH
Confidence 9888532 3466666666655554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=5.4e-13 Score=156.70 Aligned_cols=244 Identities=21% Similarity=0.266 Sum_probs=173.4
Q ss_pred cceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeecc
Q 040304 689 LESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISS 768 (1000)
Q Consensus 689 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~ 768 (1000)
...|+++++. ++.+|. .+++.|+.|++++| .++.+|..+. ++|+.|++++| .++.+|..+. .+|+.|++++
T Consensus 180 ~~~L~L~~~~-LtsLP~--~Ip~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILG-LTTIPA--CIPEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCC-cCcCCc--ccccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 3455555543 334443 24567888888877 4556665443 57888888875 4667776554 4788999998
Q ss_pred ccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCC
Q 040304 769 CDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE 848 (1000)
Q Consensus 769 ~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 848 (1000)
|. +..+|..+ .++|+.|++++ +.++.+|.. ++.+|+.|++++| .++. +|..-.++|+.|++++|.. ..+|..
T Consensus 251 N~-L~~LP~~l--~s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N-~Lt~-LP~~lp~sL~~L~Ls~N~L-t~LP~~ 322 (754)
T PRK15370 251 NR-ITELPERL--PSALQSLDLFH-NKISCLPEN-LPEELRYLSVYDN-SIRT-LPAHLPSGITHLNVQSNSL-TALPET 322 (754)
T ss_pred Cc-cCcCChhH--hCCCCEEECcC-CccCccccc-cCCCCcEEECCCC-cccc-CcccchhhHHHHHhcCCcc-ccCCcc
Confidence 75 55777655 35789999986 577777753 4568999999886 4555 5544446899999999874 445543
Q ss_pred CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCC
Q 040304 849 GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYL 928 (1000)
Q Consensus 849 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l 928 (1000)
..++|+.|++++|.+.+ +|.. + .++|+.|++++| .+..+|. ..+++|+.|++++| .++.+|. .+.
T Consensus 323 -l~~sL~~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N-~L~~LP~-----~lp~~L~~LdLs~N-~Lt~LP~-~l~-- 387 (754)
T PRK15370 323 -LPPGLKTLEAGENALTS-LPAS-L--PPELQVLDVSKN-QITVLPE-----TLPPTITTLDVSRN-ALTNLPE-NLP-- 387 (754)
T ss_pred -ccccceeccccCCcccc-CChh-h--cCcccEEECCCC-CCCcCCh-----hhcCCcCEEECCCC-cCCCCCH-hHH--
Confidence 34789999999998876 6642 3 379999999997 4677775 34689999999999 7888874 333
Q ss_pred CccccccccCCCCCcCCCCCC-----CCCCcceEeecCCchh
Q 040304 929 VSLESLEVFSCPNFTSFPEAG-----FPSSLLSLKIIGCPLL 965 (1000)
Q Consensus 929 ~~L~~L~l~~c~~l~~l~~~~-----~~~sL~~L~l~~c~~l 965 (1000)
.+|+.|++++| ++..+|... ..+++..|++.+||.-
T Consensus 388 ~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 47999999998 678888521 2467889999999853
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=3.3e-15 Score=133.59 Aligned_cols=108 Identities=31% Similarity=0.399 Sum_probs=99.8
Q ss_pred hhhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCc-ccCChhhhccc
Q 040304 285 ISDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLL-LKLPSSIGNLV 363 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~-~~lp~~i~~L~ 363 (1000)
.|..+..+.+|++|++.+|++.++|.+++.++.||.|+++.|++..+|..||.++.|++|||++|.+. ..+|..|..++
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999854 57899999999
Q ss_pred cccceeecCccccccccccccCCcccCccC
Q 040304 364 NLYHLDIDGANRLCELPLGMKELKCLRTLT 393 (1000)
Q Consensus 364 ~L~~L~L~~~~~l~~ip~~i~~L~~L~~L~ 393 (1000)
.|+-|+++.| ....+|.++++|++||.|.
T Consensus 128 tlralyl~dn-dfe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 128 TLRALYLGDN-DFEILPPDVGKLTNLQILS 156 (264)
T ss_pred HHHHHHhcCC-CcccCChhhhhhcceeEEe
Confidence 9999999999 6889999999999999883
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=7.5e-13 Score=155.51 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=67.3
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
.+..+|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 356889999999999988764 589999999999999998765 589999999987 567887654 4799999999
Q ss_pred ccccccccccc
Q 040304 373 ANRLCELPLGM 383 (1000)
Q Consensus 373 ~~~l~~ip~~i 383 (1000)
| .+..+|..+
T Consensus 251 N-~L~~LP~~l 260 (754)
T PRK15370 251 N-RITELPERL 260 (754)
T ss_pred C-ccCcCChhH
Confidence 8 566777544
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-11 Score=147.34 Aligned_cols=122 Identities=34% Similarity=0.439 Sum_probs=94.4
Q ss_pred CCcceEEEcCCcc--ccccccc-ccCCCCccEeecCCC-cccccchhhhccCCCcEEeccCCcCcccCChhhhccccccc
Q 040304 292 CKKLRVLSLGRYR--ISEVPTS-IGCLKHLRYLNFSES-WIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYH 367 (1000)
Q Consensus 292 l~~L~~L~L~~n~--l~~lp~~-~~~l~~L~~L~Ls~n-~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 367 (1000)
.+.|++|-+.+|. +..++.. |..++.|++|||++| .+..+|++|++|.+||||+++++. +..+|..+++|+.|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhhe
Confidence 4478999998886 6677554 788999999999977 678999999999999999999987 7789999999999999
Q ss_pred eeecCccccccccccccCCcccCccCceEec-CCCCCChhhccchhhh
Q 040304 368 LDIDGANRLCELPLGMKELKCLRTLTNFIVG-KDSGCALKDLKNWKFL 414 (1000)
Q Consensus 368 L~L~~~~~l~~ip~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L~~L 414 (1000)
|++..+..+..+|.....|++|++|..+... ..+...+.++.+|++|
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 9999887666776666679999999766554 2223334444443333
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=9.5e-11 Score=128.54 Aligned_cols=88 Identities=25% Similarity=0.231 Sum_probs=63.7
Q ss_pred hhhcCCCcceEEEcCCcccc-----cccccccCCCCccEeecCCCcccc-------cchhhhccCCCcEEeccCCcCccc
Q 040304 287 DLLPKCKKLRVLSLGRYRIS-----EVPTSIGCLKHLRYLNFSESWIKC-------LPEAITSLFNLEILILSDCRLLLK 354 (1000)
Q Consensus 287 ~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~Ls~n~i~~-------lp~~i~~L~~L~~L~L~~~~~~~~ 354 (1000)
..|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+.+|+.|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34555667888888888873 356667777788888888876652 344577788888888888876555
Q ss_pred CChhhhcccc---ccceeecCcc
Q 040304 355 LPSSIGNLVN---LYHLDIDGAN 374 (1000)
Q Consensus 355 lp~~i~~L~~---L~~L~L~~~~ 374 (1000)
.+..+..+.+ |++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc
Confidence 6666666666 8888888874
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=4e-11 Score=131.50 Aligned_cols=97 Identities=20% Similarity=0.079 Sum_probs=68.5
Q ss_pred EEEcCCcccc--cccccccCCCCccEeecCCCccc-----ccchhhhccCCCcEEeccCCcCc------ccCChhhhccc
Q 040304 297 VLSLGRYRIS--EVPTSIGCLKHLRYLNFSESWIK-----CLPEAITSLFNLEILILSDCRLL------LKLPSSIGNLV 363 (1000)
Q Consensus 297 ~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~~------~~lp~~i~~L~ 363 (1000)
.|+|.++.++ ..+..+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777775 34556677788999999999884 46777888889999999998743 12344577788
Q ss_pred cccceeecCccccccccccccCCcc---cCccC
Q 040304 364 NLYHLDIDGANRLCELPLGMKELKC---LRTLT 393 (1000)
Q Consensus 364 ~L~~L~L~~~~~l~~ip~~i~~L~~---L~~L~ 393 (1000)
+|+.|++++|......+..+..+.+ |++|+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 114 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELK 114 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEE
Confidence 9999999998543344444444443 66553
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=1.5e-10 Score=119.47 Aligned_cols=286 Identities=16% Similarity=0.212 Sum_probs=131.5
Q ss_pred CcceEEEEcCCCCcccccc----cCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCCcceeEeccCCCcc
Q 040304 626 PALCKLKIDGCKRLVCDGL----SESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLLT 701 (1000)
Q Consensus 626 ~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~ 701 (1000)
..|+.|.+.+|..+....+ ...++++.|.+.+|..+++.....+ ...|++|+++++..|..++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl-------------a~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL-------------ARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH-------------HHhcchhhhhhhcccchhH
Confidence 3567788888876655443 3455666666666665555331110 1134444555555544444
Q ss_pred cccc--CCCCCccccEEEEecccCcee--ccccccCccccceEeecCCCchh--hhhhhcCCcccccceeeccccccccc
Q 040304 702 CLWT--GGWLPVTLKRLEIWCCYNFKV--LTSECQLPVAIEALTISNCSNLE--SIAERFYDDACLRSILISSCDNLKSL 775 (1000)
Q Consensus 702 ~~~~--~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~~ 775 (1000)
.... .....++|++++++.|+.+.. +.....++..++.+.+.||..++ .+-.....+.-+.++++..|..++..
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 2211 112334555555555554432 22223334445555555554432 22222222334555555566555443
Q ss_pred cc--cccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccC---CCCC
Q 040304 776 PI--GLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFP---EEGL 850 (1000)
Q Consensus 776 ~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~ 850 (1000)
.. .-..+..|+.|+.++|..+++.+...+- .+.++|++|-++.|+..++.. ....
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--------------------~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALG--------------------QHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--------------------cCCCceEEEeccccchhhhhhhhhhhcC
Confidence 21 1223556666666666554443321110 133444444444444322211 1133
Q ss_pred CCCccEEEeccccCccc--ccccccccCCccceEEECCCCCcccccc--ccccccCCCCcCeEEeccCCCccccCccccC
Q 040304 851 STNLTYLEISGANIYKP--LVNWGFHKLTSLRKLCINGCSDAASFPE--VEKGVILPTSLTWIRISDFPKLERLSSKGFH 926 (1000)
Q Consensus 851 l~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 926 (1000)
.+.|+.+++.++..... +.. .-.+++.|+.|.+++|..++.-.. ..........|+.+.+.+||.+++-.-+.+.
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~s-ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLAS-LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred ChhhhhhcccccceehhhhHhh-hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 44455555554443221 111 123456666666666655543210 0001112345666666666665553333445
Q ss_pred CCCccccccccCCCCCcCC
Q 040304 927 YLVSLESLEVFSCPNFTSF 945 (1000)
Q Consensus 927 ~l~~L~~L~l~~c~~l~~l 945 (1000)
.+++|+.+++.+|..+..-
T Consensus 424 ~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKE 442 (483)
T ss_pred hCcccceeeeechhhhhhh
Confidence 5666666666666555443
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=5.6e-10 Score=115.25 Aligned_cols=271 Identities=17% Similarity=0.270 Sum_probs=159.6
Q ss_pred CCccEEEEeccccccc-----cCCCCCcceEEEEcCCCCcccccc----cCCCCcceEEecCCccccccc----cccccc
Q 040304 605 PSLEKIVITECRQLVI-----SLPSVPALCKLKIDGCKRLVCDGL----SESKSLNKMTLWNISEFENWS----SQKFQN 671 (1000)
Q Consensus 605 ~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~----~~~~~~ 671 (1000)
..|+++.+.+|..... ....+|+++.|.+.+|..++...+ ...+.|+.+++..|..+++.. ...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4578888998875433 334589999999999997776544 345678888888887777654 234555
Q ss_pred cceeEEecCCCCCccCCcceeEeccCCCccc--cccCCCCCccccEEEEecccCce--eccccccCccccceEeecCCCc
Q 040304 672 VEHLEIVGCEGSSTCLDLESLSVFRCPLLTC--LWTGGWLPVTLKRLEIWCCYNFK--VLTSECQLPVAIEALTISNCSN 747 (1000)
Q Consensus 672 L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~L~~~~~ 747 (1000)
|++++++.| +.... +.........++.+...+|...+ .+-..-..+..+.++++.+|..
T Consensus 218 L~~lNlSwc-----------------~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 218 LKYLNLSWC-----------------PQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred HHHhhhccC-----------------chhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 555555544 43332 00001222345566556665543 2333344556677778888877
Q ss_pred hhhhhhh--cCCcccccceeeccccccccccc--cccCCCCcceEeecCCCCccccCCCC---CCCCCceEeeccccCcc
Q 040304 748 LESIAER--FYDDACLRSILISSCDNLKSLPI--GLNNLSHLHRISIEGCHNLVSLPEDA---LPSSVVDVSIEECDKLK 820 (1000)
Q Consensus 748 l~~l~~~--~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~~~~l~ 820 (1000)
+++...+ ...+..|++++.++|..++..+. --++.++|+.+.+++|..+++..-.. ..+.|+.+++..|....
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 7665432 23457889999999887665432 23567899999999988765443211 22466666666666544
Q ss_pred CC-C--CCCCccccceeccccCCCcccc-----CCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCcc
Q 040304 821 GP-L--PTGKISSLQELSLKKCPGIVFF-----PEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAA 891 (1000)
Q Consensus 821 ~~-~--~~~~l~~L~~L~l~~~~~~~~~-----~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 891 (1000)
+. + ...+++.|++|.+++|..+++- ... .....|+.+.+++|+....-.-..+..+++|+.+++-+|..++
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 31 1 1126677777777777655443 111 2345566666666655443222234455555555555555444
Q ss_pred c
Q 040304 892 S 892 (1000)
Q Consensus 892 ~ 892 (1000)
.
T Consensus 441 k 441 (483)
T KOG4341|consen 441 K 441 (483)
T ss_pred h
Confidence 3
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.72 E-value=5.9e-08 Score=103.81 Aligned_cols=161 Identities=25% Similarity=0.470 Sum_probs=79.7
Q ss_pred CCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCCCCCCCccEEEecc
Q 040304 782 LSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEEGLSTNLTYLEISG 861 (1000)
Q Consensus 782 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~ 861 (1000)
+.+++.|++++| .++.+| .+|.+|+.|.+.+|+.++. +|..-.++|+.|++++|..+..+| .+|+.|++++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLts-LP~~LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTT-LPGSIPEGLEKLTVCHCPEISGLP-----ESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCccc-CCchhhhhhhheEccCcccccccc-----cccceEEeCC
Confidence 344555555554 444454 3445555555555555543 333223456666666665444443 3466666654
Q ss_pred ccCcccccccccccC-CccceEEECCCCCc--cccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccC
Q 040304 862 ANIYKPLVNWGFHKL-TSLRKLCINGCSDA--ASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFS 938 (1000)
Q Consensus 862 n~~~~~~~~~~~~~l-~~L~~L~l~~~~~l--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 938 (1000)
+.... +..+ ++|+.|.+.+++.. ..++. ..|++|+.|++.+|..+. +| ..+. .+|+.|+++.
T Consensus 122 n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~-----~LPsSLk~L~Is~c~~i~-LP-~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 122 SATDS------IKNVPNGLTSLSINSYNPENQARIDN-----LISPSLKTLSLTGCSNII-LP-EKLP--ESLQSITLHI 186 (426)
T ss_pred CCCcc------cccCcchHhheecccccccccccccc-----ccCCcccEEEecCCCccc-Cc-cccc--ccCcEEEecc
Confidence 44322 1122 35666666443211 11121 355677777777764332 22 1222 4677777765
Q ss_pred CCCC-cCCCCCCCCCCcceEeecCCchhhH
Q 040304 939 CPNF-TSFPEAGFPSSLLSLKIIGCPLLGN 967 (1000)
Q Consensus 939 c~~l-~~l~~~~~~~sL~~L~l~~c~~l~~ 967 (1000)
+... -.++...+++++ .|++.+|-.+..
T Consensus 187 n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 187 EQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred cccccccCccccccccc-EechhhhcccCH
Confidence 4211 123333455666 777777755544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.1e-08 Score=115.43 Aligned_cols=103 Identities=36% Similarity=0.542 Sum_probs=89.9
Q ss_pred hcCCCcceEEEcCCcccccccccccCCC-CccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccc
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLK-HLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYH 367 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 367 (1000)
...++.++.|++.+|.+.++|+....+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 3445789999999999999999888885 9999999999999999889999999999999998 7788887779999999
Q ss_pred eeecCccccccccccccCCcccCccC
Q 040304 368 LDIDGANRLCELPLGMKELKCLRTLT 393 (1000)
Q Consensus 368 L~L~~~~~l~~ip~~i~~L~~L~~L~ 393 (1000)
|++++| .+..+|..+..+..|++|.
T Consensus 191 L~ls~N-~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 191 LDLSGN-KISDLPPEIELLSALEELD 215 (394)
T ss_pred eeccCC-ccccCchhhhhhhhhhhhh
Confidence 999999 7889998776666677763
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=1.7e-09 Score=115.82 Aligned_cols=98 Identities=31% Similarity=0.384 Sum_probs=64.9
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
..-...||+.|++..+|..++.+..|..+.|++|.+..+|..+++|..|.+|||+.|+ +..+|..++.|+ |+.|-+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec
Confidence 3445566777777777766666666777777777777777777777777777777766 556666666665 66666666
Q ss_pred ccccccccccccCCcccCccC
Q 040304 373 ANRLCELPLGMKELKCLRTLT 393 (1000)
Q Consensus 373 ~~~l~~ip~~i~~L~~L~~L~ 393 (1000)
| +++.+|..++.+..|.+|+
T Consensus 153 N-kl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 153 N-KLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred C-ccccCCcccccchhHHHhh
Confidence 6 5666776666555555554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=2.5e-09 Score=114.57 Aligned_cols=105 Identities=31% Similarity=0.472 Sum_probs=93.6
Q ss_pred hhhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccc
Q 040304 285 ISDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVN 364 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 364 (1000)
+|..+..+..|..|.|.+|.+..+|.+++++..|.||||+.|++..+|..++.|+ |++|-+++|+ ++.+|+.++.+..
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPT 167 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchh
Confidence 3444566778899999999999999999999999999999999999999988886 8999999988 8899999999999
Q ss_pred ccceeecCccccccccccccCCcccCcc
Q 040304 365 LYHLDIDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 365 L~~L~L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
|.+||.+.| .+..+|..++.+.+|+.|
T Consensus 168 l~~ld~s~n-ei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 168 LAHLDVSKN-EIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred HHHhhhhhh-hhhhchHHhhhHHHHHHH
Confidence 999999999 688999999999888887
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=6.4e-08 Score=114.06 Aligned_cols=91 Identities=27% Similarity=0.438 Sum_probs=58.2
Q ss_pred ceEEEcCCcccc-cccccccCCCCccEeecCCCccc-ccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 295 LRVLSLGRYRIS-EVPTSIGCLKHLRYLNFSESWIK-CLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 295 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.+.+.+|+.++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 456666666665 45666666666666666666665 5666666666666666666666666666666666666666666
Q ss_pred ccccccccccccC
Q 040304 373 ANRLCELPLGMKE 385 (1000)
Q Consensus 373 ~~~l~~ip~~i~~ 385 (1000)
|...+.+|..++.
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 6555566655543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=5.2e-08 Score=93.05 Aligned_cols=99 Identities=30% Similarity=0.406 Sum_probs=28.5
Q ss_pred cCCCcceEEEcCCccccccccccc-CCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhh-hccccccc
Q 040304 290 PKCKKLRVLSLGRYRISEVPTSIG-CLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSI-GNLVNLYH 367 (1000)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~ 367 (1000)
.+...+|.|+|++|.|+.+.. ++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|. +..+++.+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 344567778888887777643 44 5677778888888777774 47777788888888777 55555544 35777888
Q ss_pred eeecCccccccccc--cccCCcccCcc
Q 040304 368 LDIDGANRLCELPL--GMKELKCLRTL 392 (1000)
Q Consensus 368 L~L~~~~~l~~ip~--~i~~L~~L~~L 392 (1000)
|++++| .+.++-. .++.+++|+.|
T Consensus 93 L~L~~N-~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 93 LYLSNN-KISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EE
T ss_pred EECcCC-cCCChHHhHHHHcCCCccee
Confidence 888777 4444321 23344444444
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.57 E-value=7.5e-08 Score=91.96 Aligned_cols=105 Identities=28% Similarity=0.406 Sum_probs=54.7
Q ss_pred CCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhh-hccCCCcEEeccCCcCcccCC--hhhhccccccc
Q 040304 291 KCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAI-TSLFNLEILILSDCRLLLKLP--SSIGNLVNLYH 367 (1000)
Q Consensus 291 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~ 367 (1000)
.+.+|++|+|++|.|+.++. +..+++|++|++++|.|+.+++.+ ..+++|+.|++++|++ ..+. ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcce
Confidence 46789999999999999864 888999999999999999997765 4799999999999984 3333 34788999999
Q ss_pred eeecCccccccccc----cccCCcccCccCceEec
Q 040304 368 LDIDGANRLCELPL----GMKELKCLRTLTNFIVG 398 (1000)
Q Consensus 368 L~L~~~~~l~~ip~----~i~~L~~L~~L~~~~~~ 398 (1000)
|++.+|. +...+. -+..+++|+.|+...+.
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 9999994 544442 27788999999765554
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=6.9e-08 Score=75.41 Aligned_cols=58 Identities=29% Similarity=0.466 Sum_probs=41.4
Q ss_pred CcceEEEcCCccccccc-ccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCc
Q 040304 293 KKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCR 350 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~ 350 (1000)
++|++|++++|+++.+| ..|..+++|++|++++|.+..+|+. |.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35677777777777775 4667777777777777777777653 7777777777777765
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.3e-09 Score=107.03 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=75.6
Q ss_pred CCCceEeeccccCccCCCCC--CCccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceE
Q 040304 806 SSVVDVSIEECDKLKGPLPT--GKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKL 882 (1000)
Q Consensus 806 ~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 882 (1000)
+.++.|.++.|...-..+.. ..+|+|+.|++.+|..+...... ..+..|+.|||++|++.+.--......++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 45555566655532110110 16788888888888533322222 5578888999998888772211246778888888
Q ss_pred EECCCCCccccccccc----cccCCCCcCeEEeccCCCccccC-ccccCCCCccccccccCC
Q 040304 883 CINGCSDAASFPEVEK----GVILPTSLTWIRISDFPKLERLS-SKGFHYLVSLESLEVFSC 939 (1000)
Q Consensus 883 ~l~~~~~l~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~l~~L~~L~l~~c 939 (1000)
+++.| .+.++..... ....+++|+.|++.+| ++...+ ...+..+++|+.|.+..+
T Consensus 277 nls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 277 NLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hcccc-CcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccc
Confidence 88885 4554432111 1134577777777777 343332 123345566666666444
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=2.2e-08 Score=98.65 Aligned_cols=101 Identities=24% Similarity=0.276 Sum_probs=81.0
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
...++.|+.|||++|.|+.+..+..-.+.+|+|++|+|.|..+.. +..|++|+.||||+|. +..+..+=.+|.+.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 345678999999999999998888889999999999999988854 8899999999999987 66666666678899999
Q ss_pred eecCccccccccccccCCcccCccC
Q 040304 369 DIDGANRLCELPLGMKELKCLRTLT 393 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~i~~L~~L~~L~ 393 (1000)
.|++| .+..+ .++++|-+|..|+
T Consensus 358 ~La~N-~iE~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 358 KLAQN-KIETL-SGLRKLYSLVNLD 380 (490)
T ss_pred ehhhh-hHhhh-hhhHhhhhheecc
Confidence 99988 45444 3466666666553
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2.4e-08 Score=98.39 Aligned_cols=125 Identities=26% Similarity=0.308 Sum_probs=91.3
Q ss_pred CccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCC
Q 040304 827 KISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTS 905 (1000)
Q Consensus 827 ~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 905 (1000)
....|++|++++|. +..+... ...|.++.|++|+|.+.. +- .++.+++|+.|++|+| .+.++..+. ..+.+
T Consensus 282 TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~-v~--nLa~L~~L~~LDLS~N-~Ls~~~Gwh---~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRT-VQ--NLAELPQLQLLDLSGN-LLAECVGWH---LKLGN 353 (490)
T ss_pred hHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceee-eh--hhhhcccceEeecccc-hhHhhhhhH---hhhcC
Confidence 45678889999886 4444444 667889999999998876 32 3677889999999985 444443211 24577
Q ss_pred cCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCC---CCCCCCcceEeecCCc
Q 040304 906 LTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPE---AGFPSSLLSLKIIGCP 963 (1000)
Q Consensus 906 L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~sL~~L~l~~c~ 963 (1000)
.+.|.+.+| .+++++ +++.+.+|..||+++| +++.+.+ .+.+|-|+.|.+.++|
T Consensus 354 IKtL~La~N-~iE~LS--GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQN-KIETLS--GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhhh-hHhhhh--hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 888888888 777775 7888888888888888 6666653 3457778888888887
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=1.1e-07 Score=107.21 Aligned_cols=95 Identities=33% Similarity=0.383 Sum_probs=75.9
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccC-CCcEEeccCCcCcccCChhhhccccccceeecCcc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLF-NLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
..|++..+.+...+..+..+..++.|++.+|.+..+|...+.+. +|+.|++++|. +..+|..++.+++|+.|++++|
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN- 173 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-
Confidence 46888888876555556677889999999999999998888885 99999999988 7778777899999999999998
Q ss_pred ccccccccccCCcccCcc
Q 040304 375 RLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 375 ~l~~ip~~i~~L~~L~~L 392 (1000)
.+.++|...+.++.|+.|
T Consensus 174 ~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhhhhhhhhhhhhhhhhe
Confidence 677777655555555544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.8e-07 Score=73.01 Aligned_cols=59 Identities=34% Similarity=0.426 Sum_probs=51.9
Q ss_pred CCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceeecCcc
Q 040304 316 KHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 316 ~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
++|++|++++|.+..+|.. |.++++|++|++++|.+...-|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5799999999999999964 8999999999999998554445679999999999999983
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.7e-08 Score=100.80 Aligned_cols=206 Identities=16% Similarity=0.098 Sum_probs=122.1
Q ss_pred ccCccccceEeecCCCchhhhh--hhcCCcccccceeecccccccc---ccccccCCCCcceEeecCCCCccccCCCCCC
Q 040304 731 CQLPVAIEALTISNCSNLESIA--ERFYDDACLRSILISSCDNLKS---LPIGLNNLSHLHRISIEGCHNLVSLPEDALP 805 (1000)
Q Consensus 731 ~~~~~~L~~L~L~~~~~l~~l~--~~~~~l~~L~~L~l~~~~~l~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 805 (1000)
..++.+|++..|.++. +...+ .....+++++.||++.|- +.. +-.....+|+|+.|+++.+ .+..+..
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~---- 189 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSN-RLSNFIS---- 189 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccc-cccCCcc----
Confidence 3445667777776643 22222 123345677777777742 222 1223456777777777773 3322211
Q ss_pred CCCceEeeccccCccCCCCCCCccccceeccccCCCc-cccCC-CCCCCCccEEEeccccCcccccccccccCCccceEE
Q 040304 806 SSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGI-VFFPE-EGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLC 883 (1000)
Q Consensus 806 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~-~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 883 (1000)
+ .....++.|+.|.++.|... .++.. ...+|+|+.|++.+|.... +.....+-+..|++|+
T Consensus 190 -----------s-----~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 190 -----------S-----NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELD 252 (505)
T ss_pred -----------c-----cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhcc
Confidence 0 11125788999999988633 11111 1457899999999996333 2223456688999999
Q ss_pred ECCCCCccccccccccccCCCCcCeEEeccCCCccccCcccc------CCCCccccccccCCCCCcCCC---CCCCCCCc
Q 040304 884 INGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGF------HYLVSLESLEVFSCPNFTSFP---EAGFPSSL 954 (1000)
Q Consensus 884 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~------~~l~~L~~L~l~~c~~l~~l~---~~~~~~sL 954 (1000)
|++|+.+. ++. ......++.|+.|.++.+ .+.++..-.. ..+++|++|++..|+ +.+.+ ....+.+|
T Consensus 253 Ls~N~li~-~~~-~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 253 LSNNNLID-FDQ-GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENL 328 (505)
T ss_pred ccCCcccc-ccc-ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchh
Confidence 99976554 221 122345688888888888 5555422122 468899999999984 44444 34456778
Q ss_pred ceEeecCCch
Q 040304 955 LSLKIIGCPL 964 (1000)
Q Consensus 955 ~~L~l~~c~~ 964 (1000)
+.|.+..++.
T Consensus 329 k~l~~~~n~l 338 (505)
T KOG3207|consen 329 KHLRITLNYL 338 (505)
T ss_pred hhhhcccccc
Confidence 8887766553
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=1.2e-06 Score=94.08 Aligned_cols=60 Identities=25% Similarity=0.440 Sum_probs=32.3
Q ss_pred CCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhh
Q 040304 687 LDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIA 752 (1000)
Q Consensus 687 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~ 752 (1000)
..+..|++++| .++.+| .+|.+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 44555555555 344444 355566666666666665555432 2455566665555444443
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=1.1e-06 Score=103.86 Aligned_cols=98 Identities=24% Similarity=0.466 Sum_probs=85.5
Q ss_pred hhhhhhhcCCCcceEEEcCCcccc-cccccccCCCCccEeecCCCccc-ccchhhhccCCCcEEeccCCcCcccCChhhh
Q 040304 283 MVISDLLPKCKKLRVLSLGRYRIS-EVPTSIGCLKHLRYLNFSESWIK-CLPEAITSLFNLEILILSDCRLLLKLPSSIG 360 (1000)
Q Consensus 283 ~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 360 (1000)
..+|..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|+.++++++|++|+|++|.+.+.+|..++
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 345667889999999999999998 78999999999999999999987 7899999999999999999998999999887
Q ss_pred cc-ccccceeecCcccccccc
Q 040304 361 NL-VNLYHLDIDGANRLCELP 380 (1000)
Q Consensus 361 ~L-~~L~~L~L~~~~~l~~ip 380 (1000)
.+ .++..+++.+|..+...|
T Consensus 512 ~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 512 GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred hccccCceEEecCCccccCCC
Confidence 64 577889999886555444
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=3e-07 Score=93.48 Aligned_cols=253 Identities=17% Similarity=0.163 Sum_probs=142.6
Q ss_pred hhcCCCcceEEEcCCcccc-----cccccccCCCCccEeecCCCc----ccccchh-------hhccCCCcEEeccCCcC
Q 040304 288 LLPKCKKLRVLSLGRYRIS-----EVPTSIGCLKHLRYLNFSESW----IKCLPEA-------ITSLFNLEILILSDCRL 351 (1000)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~Ls~n~----i~~lp~~-------i~~L~~L~~L~L~~~~~ 351 (1000)
....+..++.++|++|.+. .+...+.+.++|+.-+++.-. ..++|+. +-..++|++||||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3456778999999999986 355667788899999998742 2355543 34566999999999975
Q ss_pred cccCChh----hhccccccceeecCcccccccccc-ccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCC
Q 040304 352 LLKLPSS----IGNLVNLYHLDIDGANRLCELPLG-MKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENV 426 (1000)
Q Consensus 352 ~~~lp~~----i~~L~~L~~L~L~~~~~l~~ip~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~ 426 (1000)
--.-+.. +.++..|++|+|.+| -++..... +++ .|.+|..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~--al~~l~~-------------------------------- 149 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGR--ALFELAV-------------------------------- 149 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHH--HHHHHHH--------------------------------
Confidence 4333333 566788999999988 34433221 211 1222210
Q ss_pred CChhhhhHHhhccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCccc-----CCCCCCc
Q 040304 427 IDSQEANEALLRVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWI-----GDPSFSN 501 (1000)
Q Consensus 427 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-----~~~~~~~ 501 (1000)
.......+.|+++....+.. -+.....+-..+..++.|+.+.+..+.+.. ..+ .-..+++
T Consensus 150 -------~kk~~~~~~Lrv~i~~rNrl------en~ga~~~A~~~~~~~~leevr~~qN~I~~--eG~~al~eal~~~~~ 214 (382)
T KOG1909|consen 150 -------NKKAASKPKLRVFICGRNRL------ENGGATALAEAFQSHPTLEEVRLSQNGIRP--EGVTALAEALEHCPH 214 (382)
T ss_pred -------HhccCCCcceEEEEeecccc------ccccHHHHHHHHHhccccceEEEecccccC--chhHHHHHHHHhCCc
Confidence 00122233455554432221 111222344455556677777777665432 111 0124678
Q ss_pred eeEEEEcCCCCCCC----CC-CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCc
Q 040304 502 VAVLILKNCRRSTS----LP-SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTEND 576 (1000)
Q Consensus 502 L~~L~L~~~~~~~~----l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 576 (1000)
|+.|+|.+|.+... +. .+..+++|++|++++|..-..-...+.. .-...+|+|+.|.+.+|.....-.. ...
T Consensus 215 LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~-al~~~~p~L~vl~l~gNeIt~da~~--~la 291 (382)
T KOG1909|consen 215 LEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD-ALKESAPSLEVLELAGNEITRDAAL--ALA 291 (382)
T ss_pred ceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH-HHhccCCCCceeccCcchhHHHHHH--HHH
Confidence 88888888876432 11 4556678888888887532221111111 1112378888888888876332110 111
Q ss_pred cccccCCccceEEecCC
Q 040304 577 EHVQAFPRLQKLFIHKC 593 (1000)
Q Consensus 577 ~~~~~~~~L~~L~l~~c 593 (1000)
.++...|.|+.|+|++|
T Consensus 292 ~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHhcchhhHHhcCCcc
Confidence 22344677888888774
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.6e-06 Score=59.77 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=18.8
Q ss_pred cceEEEcCCcccccccccccCCCCccEeecCCCccccc
Q 040304 294 KLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCL 331 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l 331 (1000)
+|++|++++|+|+.+|..+++|++|++|++++|.|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555554455555555555555555444
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=8.1e-06 Score=57.96 Aligned_cols=40 Identities=35% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCC
Q 040304 316 KHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLP 356 (1000)
Q Consensus 316 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp 356 (1000)
++|++|++++|+|+.+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46888889888888888888888888888888887 44443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2e-07 Score=92.23 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=108.9
Q ss_pred ccccEEEEecccCce-eccccccCccccceEeecCCCchhhhhhhcCCcccccceeecccccccccc--ccccCCCCcce
Q 040304 711 VTLKRLEIWCCYNFK-VLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLP--IGLNNLSHLHR 787 (1000)
Q Consensus 711 ~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~ 787 (1000)
+.|+.+|+++..... .+...+.++.+|+.|.|.++.--..+...+..=.+|+.|+++.|..++... ..+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 356777776554322 344556667778888887765545554444333678888888887776542 23567888888
Q ss_pred EeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCC---C-CCCCCccEEEecccc
Q 040304 788 ISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPE---E-GLSTNLTYLEISGAN 863 (1000)
Q Consensus 788 L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~-~~l~~L~~L~L~~n~ 863 (1000)
|+++.|...+..-.. +...--+.|+.|++++|...-.... . ..+++|.+|||++|.
T Consensus 265 LNlsWc~l~~~~Vtv--------------------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV--------------------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchhhhH--------------------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 888887433322110 0001124566667776642211111 1 557888888888887
Q ss_pred CcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCC
Q 040304 864 IYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFP 915 (1000)
Q Consensus 864 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 915 (1000)
....-....|..++.|++|.++.|..+- |+..-.+...++|..|++.+|-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 6553222356778888888888886543 3222223455788888888873
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.5e-07 Score=90.53 Aligned_cols=156 Identities=22% Similarity=0.199 Sum_probs=102.0
Q ss_pred ccCCCCcceEeecCCCCccccC--CCCCCCCCceEeeccccCccCCCCC----CCccccceeccccCCCccccCCC---C
Q 040304 779 LNNLSHLHRISIEGCHNLVSLP--EDALPSSVVDVSIEECDKLKGPLPT----GKISSLQELSLKKCPGIVFFPEE---G 849 (1000)
Q Consensus 779 ~~~l~~L~~L~l~~c~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~---~ 849 (1000)
+..|.+|+.|.+.+. .+.+-- ...-..+|+.|+++.|+.++. ... .+|+.|.+|+++-|......-.. .
T Consensus 206 Ls~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccch-hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 444555555555552 222110 011123666666666666654 222 38899999999999655433111 4
Q ss_pred CCCCccEEEeccccCcc---cccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccC
Q 040304 850 LSTNLTYLEISGANIYK---PLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFH 926 (1000)
Q Consensus 850 ~l~~L~~L~L~~n~~~~---~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 926 (1000)
--++|+.|+|+|+...- .+.. ....+++|..||+++|..++. ....++..++.|+.|.++.|..+---....+.
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~ 360 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETLLELN 360 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHeeeec
Confidence 46899999999986422 2222 356799999999999988875 33445567899999999999654322123456
Q ss_pred CCCccccccccCC
Q 040304 927 YLVSLESLEVFSC 939 (1000)
Q Consensus 927 ~l~~L~~L~l~~c 939 (1000)
..|+|.+|++.+|
T Consensus 361 s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 361 SKPSLVYLDVFGC 373 (419)
T ss_pred cCcceEEEEeccc
Confidence 7899999999988
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=2e-06 Score=97.15 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=79.3
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+..++.|+.|++.+|.|..+...+..+.+|++|+|++|.|+.+. .+..+..|+.|++++|. +..++. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchhhhcc
Confidence 56788999999999999988776888999999999999999884 47888889999999987 555554 7778999999
Q ss_pred eecCcccccccccc-ccCCcccCcc
Q 040304 369 DIDGANRLCELPLG-MKELKCLRTL 392 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~-i~~L~~L~~L 392 (1000)
++++| .+..+... ...+.+++.+
T Consensus 168 ~l~~n-~i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 168 DLSYN-RIVDIENDELSELISLEEL 191 (414)
T ss_pred cCCcc-hhhhhhhhhhhhccchHHH
Confidence 99998 56666543 3555555555
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=3.6e-06 Score=73.70 Aligned_cols=92 Identities=24% Similarity=0.257 Sum_probs=80.2
Q ss_pred hcCCCcceEEEcCCccccccccccc-CCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccc
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIG-CLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYH 367 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 367 (1000)
+.+..+|+..+|++|.++++|..|. ..+-++.|+|++|.|..+|.++..++.|+.|+++.|. +...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence 4456788899999999999998874 4458999999999999999999999999999999998 6778888989999999
Q ss_pred eeecCcccccccccc
Q 040304 368 LDIDGANRLCELPLG 382 (1000)
Q Consensus 368 L~L~~~~~l~~ip~~ 382 (1000)
|+..+| -..++|.+
T Consensus 128 Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 128 LDSPEN-ARAEIDVD 141 (177)
T ss_pred hcCCCC-ccccCcHH
Confidence 999888 56777765
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=7.4e-06 Score=92.51 Aligned_cols=100 Identities=27% Similarity=0.420 Sum_probs=80.9
Q ss_pred CCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 291 KCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 291 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
.+..++.+.+..|.+..+-..+..+.+|.+|++.+|.|..+...+..+.+|++|++++|. +..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhhee
Confidence 455677777899999886666889999999999999999997668999999999999998 555554 788889999999
Q ss_pred cCccccccccccccCCcccCccCc
Q 040304 371 DGANRLCELPLGMKELKCLRTLTN 394 (1000)
Q Consensus 371 ~~~~~l~~ip~~i~~L~~L~~L~~ 394 (1000)
++| .+..++ ++..++.|+.++.
T Consensus 148 ~~N-~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 148 SGN-LISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccC-cchhcc-CCccchhhhcccC
Confidence 999 566654 4555667766643
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.61 E-value=1.1e-05 Score=82.37 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=39.0
Q ss_pred CCceeEEEEcCCCCCCC--C---CC-CCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCccc
Q 040304 499 FSNVAVLILKNCRRSTS--L---PS-LGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQV 565 (1000)
Q Consensus 499 ~~~L~~L~L~~~~~~~~--l---~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 565 (1000)
+++|+.|.+++|.+... . .. -...|+|+.|.+.+|.....-..... .+....|.|..|++++|..
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la--~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA--ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH--HHHhcchhhHHhcCCcccc
Confidence 56778888888865331 1 11 22468888888888865443222111 1112368888888888876
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.55 E-value=8.1e-06 Score=71.52 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=83.5
Q ss_pred CcceEEEcCCccccccccc---ccCCCCccEeecCCCcccccchhhhcc-CCCcEEeccCCcCcccCChhhhccccccce
Q 040304 293 KKLRVLSLGRYRISEVPTS---IGCLKHLRYLNFSESWIKCLPEAITSL-FNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~---~~~l~~L~~L~Ls~n~i~~lp~~i~~L-~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+.+..+||+.|++..+++. +....+|...+|++|.+...|+.|... +.+++|++++|. +..+|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 4567899999998877665 466778888999999999999986654 599999999998 88999999999999999
Q ss_pred eecCccccccccccccCCcccCccC
Q 040304 369 DIDGANRLCELPLGMKELKCLRTLT 393 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~i~~L~~L~~L~ 393 (1000)
+++.| .+...|+-+..|.+|-.|+
T Consensus 106 Nl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 106 NLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ccccC-ccccchHHHHHHHhHHHhc
Confidence 99999 6777888887777776664
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=5.3e-05 Score=75.46 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=21.0
Q ss_pred CCCCcceeeccCcccccccCCCCCCccccccCCccceEE
Q 040304 551 PFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLF 589 (1000)
Q Consensus 551 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 589 (1000)
+||.|..|.+++++.++......-.---++.+++++.|+
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 477777777777776655443221111234555655554
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=1.3e-05 Score=89.24 Aligned_cols=96 Identities=27% Similarity=0.260 Sum_probs=43.9
Q ss_pred cceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChh-hhccccccceeecC
Q 040304 294 KLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSS-IGNLVNLYHLDIDG 372 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~ 372 (1000)
.|.+-+.+.|.+..+..++.-+++|+.|||++|++...- .+..|.+|++|||++|. +..+|.- ...+. |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecc
Confidence 344444555555444444545555555555555554442 44555555555555554 3334421 11122 55555554
Q ss_pred ccccccccccccCCcccCccCc
Q 040304 373 ANRLCELPLGMKELKCLRTLTN 394 (1000)
Q Consensus 373 ~~~l~~ip~~i~~L~~L~~L~~ 394 (1000)
| -++.+ .++.+|++|+.|+.
T Consensus 242 N-~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 242 N-ALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred c-HHHhh-hhHHhhhhhhccch
Confidence 4 23332 23444555555443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.32 E-value=8.3e-05 Score=73.12 Aligned_cols=90 Identities=24% Similarity=0.328 Sum_probs=68.2
Q ss_pred cCCCcceEEEcCCcccc-----cccccccCCCCccEeecCCCccc----ccc-------hhhhccCCCcEEeccCCcCcc
Q 040304 290 PKCKKLRVLSLGRYRIS-----EVPTSIGCLKHLRYLNFSESWIK----CLP-------EAITSLFNLEILILSDCRLLL 353 (1000)
Q Consensus 290 ~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~Ls~n~i~----~lp-------~~i~~L~~L~~L~L~~~~~~~ 353 (1000)
..+..++.++||+|.|. .+...+.+-.+|++.+++.-... ++| ..+-++++|+..+||.|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34778899999999986 35566778899999999875332 333 345688999999999998766
Q ss_pred cCChh----hhccccccceeecCcccccccc
Q 040304 354 KLPSS----IGNLVNLYHLDIDGANRLCELP 380 (1000)
Q Consensus 354 ~lp~~----i~~L~~L~~L~L~~~~~l~~ip 380 (1000)
..|+. |.+-+.|.+|.+++| .++.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~a 136 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIA 136 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC-CCCccc
Confidence 66654 556788999999988 555544
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.20 E-value=4.3e-05 Score=85.14 Aligned_cols=85 Identities=26% Similarity=0.395 Sum_probs=47.7
Q ss_pred hhhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccc
Q 040304 285 ISDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLV 363 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 363 (1000)
...+++-++.|+.|+|++|++++.. .+..|++|++|||++|.+..+|.- ..... |+.|.+++|. +..+-. +.+|+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g-ie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG-IENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhh-HHhhh
Confidence 3444555566666666666666554 455666666666666666666542 22222 6666666654 333333 55666
Q ss_pred cccceeecCc
Q 040304 364 NLYHLDIDGA 373 (1000)
Q Consensus 364 ~L~~L~L~~~ 373 (1000)
+|+.||+++|
T Consensus 255 sL~~LDlsyN 264 (1096)
T KOG1859|consen 255 SLYGLDLSYN 264 (1096)
T ss_pred hhhccchhHh
Confidence 6666666655
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00021 Score=71.37 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=54.6
Q ss_pred CCCcceEEEcCCccccc---ccccccCCCCccEeecCCCcccccchhh-hccCCCcEEeccCCcCcc-cCChhhhccccc
Q 040304 291 KCKKLRVLSLGRYRISE---VPTSIGCLKHLRYLNFSESWIKCLPEAI-TSLFNLEILILSDCRLLL-KLPSSIGNLVNL 365 (1000)
Q Consensus 291 ~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L 365 (1000)
.+..++.|||.+|.|+. +-..+.++++|++|+|++|.+...-.+. -.+.+|++|-|.++.+.. ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45678888888888874 3344578888888888888654221222 356788888888766432 222335667777
Q ss_pred cceeecCc
Q 040304 366 YHLDIDGA 373 (1000)
Q Consensus 366 ~~L~L~~~ 373 (1000)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 77777776
No 59
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.06 E-value=0.006 Score=77.38 Aligned_cols=171 Identities=12% Similarity=0.184 Sum_probs=109.9
Q ss_pred CCcEEEEEcCChHHH--hhc-CCCceEeCC----CCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHH
Q 040304 5 PGSRIIVTTRSRDVA--SKM-GPVKYYGLK----LLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAAR 77 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v~--~~~-~~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~ 77 (1000)
++-++|||||..--. ... ......++. +|+.+|+.++|....... . -.+.+.++.+.|+|.|+++.
T Consensus 151 ~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~-----~~~~~~~l~~~t~Gwp~~l~ 223 (903)
T PRK04841 151 ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--I-----EAAESSRLCDDVEGWATALQ 223 (903)
T ss_pred CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--C-----CHHHHHHHHHHhCChHHHHH
Confidence 456888999983211 111 112345556 999999999998765211 1 13567889999999999999
Q ss_pred HHHhhhccCCcHHHHHHHhhhccccCC--CCCCchHHHHHh-hccCchhHHHHhhhhcccCCCCCCChHHHHHHHHHcCC
Q 040304 78 ALGGLLGSKQRVDEWRAILDSKIWDLE--DETEVPSVLKLS-YHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGL 154 (1000)
Q Consensus 78 ~~g~~L~~~~~~~~w~~~l~~~~~~~~--~~~~~~~~l~~s-y~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~ 154 (1000)
.++..++...... .... +... +...+...+.-. |+.||++.+..++..|+++ .++.+-+-..
T Consensus 224 l~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------ 288 (903)
T PRK04841 224 LIALSARQNNSSL--HDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------ 288 (903)
T ss_pred HHHHHHhhCCCch--hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------
Confidence 9988875543210 0011 1111 112355554444 8899999999999999986 3443322211
Q ss_pred CccCcccchHHHHHHHHHHHHHhcccccc-cCCCCCeEEEchHHHHHHHHhh
Q 040304 155 IQQSKDRKQADDLGSEYFHDLLSRSLFQK-SSNSGSKFVMHDLVHDLAQWAS 205 (1000)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~L~~~~ll~~-~~~~~~~~~mhdlv~~~~~~~~ 205 (1000)
.+ .+.+...+++|.+++++.. .+.+..+|++|++++++.+...
T Consensus 289 ~~--------~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 289 TG--------EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cC--------CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 11 1225778999999999653 3434458999999999998765
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.90 E-value=4.8e-05 Score=88.84 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=32.7
Q ss_pred EEeccCCCcc-ccCccccCCCCccccccccCCCCCcCCCCC--CC-CCCcceEeecCCchhhHhhh
Q 040304 909 IRISDFPKLE-RLSSKGFHYLVSLESLEVFSCPNFTSFPEA--GF-PSSLLSLKIIGCPLLGNKCR 970 (1000)
Q Consensus 909 L~l~~~~~l~-~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~-~~sL~~L~l~~c~~l~~~~~ 970 (1000)
+.+.+|+.++ .+. .-......++.|+++.|..++.---. .. ..++..+++++|+.++....
T Consensus 381 ~~l~gc~~l~~~l~-~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 381 LSLRGCPNLTESLE-LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred HHhcCCcccchHHH-HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 4455666552 221 11122233777777777655443211 01 45677788888887776654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.85 E-value=0.0013 Score=62.29 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=70.6
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhc-cCCCcEEeccCCcCcccCCh--hhhcccccccee
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITS-LFNLEILILSDCRLLLKLPS--SIGNLVNLYHLD 369 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~-L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~ 369 (1000)
.....+||++|.+..++. |..++.|..|.|++|+|+.+-+.+.. +++|..|.|.+|. +..+.+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 356788889988887764 77888899999999988888766554 4568899998887 433332 266788888888
Q ss_pred ecCccccccccc----cccCCcccCccCc
Q 040304 370 IDGANRLCELPL----GMKELKCLRTLTN 394 (1000)
Q Consensus 370 L~~~~~l~~ip~----~i~~L~~L~~L~~ 394 (1000)
+-+| .+..-+. -+.++++|++|++
T Consensus 120 ll~N-pv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 120 LLGN-PVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred ecCC-chhcccCceeEEEEecCcceEeeh
Confidence 8887 3333321 2566777777754
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.68 E-value=0.00019 Score=83.87 Aligned_cols=141 Identities=23% Similarity=0.287 Sum_probs=77.1
Q ss_pred CccccceeccccCCCccccCC---CCCCCCccEEEeccccCcc--cccccccccCCccceEEECCCC---Cccccccccc
Q 040304 827 KISSLQELSLKKCPGIVFFPE---EGLSTNLTYLEISGANIYK--PLVNWGFHKLTSLRKLCINGCS---DAASFPEVEK 898 (1000)
Q Consensus 827 ~l~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~l~~~~---~l~~~~~~~~ 898 (1000)
.+++|++|.+.+|..+++-.. ...+++|++|+|++|...+ .+... ...+++|+.|.+..+. .++...- ..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l-~~ 344 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSL-SG 344 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHH-HH
Confidence 366777777766764322111 1446677777777776643 12222 3446666665554433 3433221 00
Q ss_pred cccCC-CCcCeEEeccCCCccccCccccCCCCccc-cccccCCCCC-cCCCCC-CCCCCcceEeecCCchhhHhhh
Q 040304 899 GVILP-TSLTWIRISDFPKLERLSSKGFHYLVSLE-SLEVFSCPNF-TSFPEA-GFPSSLLSLKIIGCPLLGNKCR 970 (1000)
Q Consensus 899 ~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~l~~L~-~L~l~~c~~l-~~l~~~-~~~~sL~~L~l~~c~~l~~~~~ 970 (1000)
..... ..+..+.+.+|++++.+.-...+ ..... .+.+.+|+.+ ..+... ....+++.|+++.|...+....
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l 419 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGL 419 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccch
Confidence 00112 25677777777777775533333 33333 6788888888 333221 1233489999999987775543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.56 E-value=0.0012 Score=77.99 Aligned_cols=78 Identities=27% Similarity=0.290 Sum_probs=42.1
Q ss_pred CcceEEEcCCcccc--cccccc-cCCCCccEeecCCCccc--ccchhhhccCCCcEEeccCCcCcccCChhhhccccccc
Q 040304 293 KKLRVLSLGRYRIS--EVPTSI-GCLKHLRYLNFSESWIK--CLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYH 367 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~--~lp~~~-~~l~~L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 367 (1000)
.+|+.||++|...- .-|..+ ..|+.|+.|.+++-.+. +.-.-..++++|..||+|++. +..+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 45677777665422 112223 34666676666664332 222234566666666666665 3333 34666666666
Q ss_pred eeecC
Q 040304 368 LDIDG 372 (1000)
Q Consensus 368 L~L~~ 372 (1000)
|.+.+
T Consensus 200 L~mrn 204 (699)
T KOG3665|consen 200 LSMRN 204 (699)
T ss_pred HhccC
Confidence 66543
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.0025 Score=60.48 Aligned_cols=85 Identities=25% Similarity=0.290 Sum_probs=68.6
Q ss_pred hhcCCCcceEEEcCCcccccccccc-cCCCCccEeecCCCcccccch--hhhccCCCcEEeccCCcCcccCC----hhhh
Q 040304 288 LLPKCKKLRVLSLGRYRISEVPTSI-GCLKHLRYLNFSESWIKCLPE--AITSLFNLEILILSDCRLLLKLP----SSIG 360 (1000)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp----~~i~ 360 (1000)
.|+.++.|.+|.|++|+|+.|.+.+ ..+++|..|.|.+|.|.++.+ .+..++.|++|.+-+|.. ...+ -.+.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv-~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV-EHKKNYRLYVLY 137 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch-hcccCceeEEEE
Confidence 4778899999999999999995545 556789999999999887753 377889999999999873 3332 1378
Q ss_pred ccccccceeecCc
Q 040304 361 NLVNLYHLDIDGA 373 (1000)
Q Consensus 361 ~L~~L~~L~L~~~ 373 (1000)
++++|++||..+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 8999999998765
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.46 E-value=0.0011 Score=78.37 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=54.8
Q ss_pred CCCceEeeccccCccCCCC--C-CCccccceeccccCCCc-cccCC-CCCCCCccEEEeccccCcccccccccccCCccc
Q 040304 806 SSVVDVSIEECDKLKGPLP--T-GKISSLQELSLKKCPGI-VFFPE-EGLSTNLTYLEISGANIYKPLVNWGFHKLTSLR 880 (1000)
Q Consensus 806 ~~L~~L~l~~~~~l~~~~~--~-~~l~~L~~L~l~~~~~~-~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 880 (1000)
.+|++|++++...+...-+ . .-+|+|+.|.+++=... .++.. ...+++|..||||++++.. + .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhccccHH
Confidence 4677777776444332111 0 15677777777653211 11111 2567777777777777665 2 2566777777
Q ss_pred eEEECCCCCccccccccccccCCCCcCeEEeccC
Q 040304 881 KLCINGCSDAASFPEVEKGVILPTSLTWIRISDF 914 (1000)
Q Consensus 881 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 914 (1000)
.|.+.+-+ +..-... ..+..+++|+.||++.-
T Consensus 199 ~L~mrnLe-~e~~~~l-~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLE-FESYQDL-IDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCC-CCchhhH-HHHhcccCCCeeecccc
Confidence 77776632 2221111 11234566666666664
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.0002 Score=70.76 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=67.0
Q ss_pred ccccceeccccCCCccccCCCCCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcC
Q 040304 828 ISSLQELSLKKCPGIVFFPEEGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLT 907 (1000)
Q Consensus 828 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 907 (1000)
+.+.+.|+..+|. +.++.....++.|++|.||=|.+.+ +. .+..|++|++|+|..| .|.++.+ ...+..+++|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIss-L~--pl~rCtrLkElYLRkN-~I~sldE-L~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISS-LA--PLQRCTRLKELYLRKN-CIESLDE-LEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcccceeEEeecccccc-ch--hHHHHHHHHHHHHHhc-ccccHHH-HHHHhcCchhh
Confidence 5566777787775 6666666778888888888888776 32 3678888888888874 4666655 22334566777
Q ss_pred eEEeccCCCccccCc----cccCCCCcccccc
Q 040304 908 WIRISDFPKLERLSS----KGFHYLVSLESLE 935 (1000)
Q Consensus 908 ~L~l~~~~~l~~l~~----~~~~~l~~L~~L~ 935 (1000)
.|+|..||....-+. ..+.-||+|++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777765544321 2234566666664
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0023 Score=37.62 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=9.4
Q ss_pred ccEeecCCCcccccchhhh
Q 040304 318 LRYLNFSESWIKCLPEAIT 336 (1000)
Q Consensus 318 L~~L~Ls~n~i~~lp~~i~ 336 (1000)
|++|||++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555555554443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.00073 Score=66.97 Aligned_cols=101 Identities=20% Similarity=0.185 Sum_probs=57.0
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCCh--hhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPS--SIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L 370 (1000)
.+.+.|++-|+.+..|.- ...++.|++|.||-|.|+.+ ..+..+++|+.|+|+.|. +..+.+ -+.+|++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 344555555666554432 34566666666666666666 336666666666666665 333322 1456677777777
Q ss_pred cCcccccccccc-----ccCCcccCccCceE
Q 040304 371 DGANRLCELPLG-----MKELKCLRTLTNFI 396 (1000)
Q Consensus 371 ~~~~~l~~ip~~-----i~~L~~L~~L~~~~ 396 (1000)
..|.-.+.-+.. +.-|++|+.|++..
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 666444444332 45566676665543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.80 E-value=0.0039 Score=62.03 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=62.5
Q ss_pred CccccceeccccCCCccccCCCCCCCCccEEEeccc--cCcccccccccccCCccceEEECCCCCccccccccccccCCC
Q 040304 827 KISSLQELSLKKCPGIVFFPEEGLSTNLTYLEISGA--NIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPT 904 (1000)
Q Consensus 827 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 904 (1000)
.+..|+.|++.++. ++.+...-.+++|+.|.++.| +..+.++. ....+|+|++|++++|. +..+.. -.....+.
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nk-i~~lst-l~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNK-IKDLST-LRPLKELE 116 (260)
T ss_pred cccchhhhhhhccc-eeecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCc-cccccc-cchhhhhc
Confidence 45566666666654 233322345677888888887 44443433 34456888888888753 332222 11223456
Q ss_pred CcCeEEeccCCCcc--ccCccccCCCCccccccccCCCC
Q 040304 905 SLTWIRISDFPKLE--RLSSKGFHYLVSLESLEVFSCPN 941 (1000)
Q Consensus 905 ~L~~L~l~~~~~l~--~l~~~~~~~l~~L~~L~l~~c~~ 941 (1000)
+|.+|++.+|+-.. +--...|.-+++|++||-.++..
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 67777777774322 11224455677888887776644
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.52 E-value=0.0072 Score=60.19 Aligned_cols=59 Identities=25% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCCCccEeecCCCcccccchhhhccCCCcEEeccCC--cCcccCChhhhccccccceeecCc
Q 040304 314 CLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDC--RLLLKLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 314 ~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~L~~~ 373 (1000)
.+..|+.|++.+..++++ ..+-.|++|++|+++.| +....++.-...+++|++|++++|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 334455555555444433 22445666666666666 444444444445566777777666
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0074 Score=35.45 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=18.7
Q ss_pred cceEEEcCCcccccccccccCC
Q 040304 294 KLRVLSLGRYRISEVPTSIGCL 315 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~~~~l 315 (1000)
+|++|||++|+++.+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.80 E-value=0.0014 Score=63.24 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=71.3
Q ss_pred cCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 290 PKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
...+..++||++.|++..+-..|+-++.|..||++.|.|..+|..++.+..++.+++..|. ....|.+++.++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhh
Confidence 4456788999999988888777888888899999999999999889999889989888876 778888889999999988
Q ss_pred ecCcc
Q 040304 370 IDGAN 374 (1000)
Q Consensus 370 L~~~~ 374 (1000)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 88873
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.13 E-value=0.082 Score=48.54 Aligned_cols=101 Identities=16% Similarity=0.350 Sum_probs=56.3
Q ss_pred hhhhhcCCCcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCC-hhhhc
Q 040304 285 ISDLLPKCKKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLP-SSIGN 361 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp-~~i~~ 361 (1000)
...+|.++.+|+.+.+.. .+..+ ..+|..+.+|+.+.+..+ +..++.. |.+..+|+.+.+.. . ...++ ..|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccccc
Confidence 345677888888888874 57777 456788888888888775 7777754 77887888888865 2 33343 34667
Q ss_pred cccccceeecCcccccccccc-ccCCcccCcc
Q 040304 362 LVNLYHLDIDGANRLCELPLG-MKELKCLRTL 392 (1000)
Q Consensus 362 L~~L~~L~L~~~~~l~~ip~~-i~~L~~L~~L 392 (1000)
+++|+.+++..+ +..++.. +.+. +|+.+
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEE
Confidence 888888888654 3444443 4444 55544
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.0081 Score=57.25 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=60.3
Q ss_pred CccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccc
Q 040304 853 NLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLE 932 (1000)
Q Consensus 853 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~ 932 (1000)
.++.+|-+++.+...... .+.++++++.|.+.+|.......- +..-...++|+.|++++|+++++---.++..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHH-HHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 466677777766553322 467788888888888876654332 111125578888888888888876556677788888
Q ss_pred cccccCCCCCcC
Q 040304 933 SLEVFSCPNFTS 944 (1000)
Q Consensus 933 ~L~l~~c~~l~~ 944 (1000)
.|.+++-+.+..
T Consensus 180 ~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 180 RLHLYDLPYVAN 191 (221)
T ss_pred HHHhcCchhhhc
Confidence 888877654433
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.88 E-value=0.039 Score=29.97 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=5.5
Q ss_pred CccEeecCCCcccccc
Q 040304 317 HLRYLNFSESWIKCLP 332 (1000)
Q Consensus 317 ~L~~L~Ls~n~i~~lp 332 (1000)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 76
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.32 E-value=0.56 Score=50.64 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=88.8
Q ss_pred CcEEEEEcCChHHHhhc--CCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhhh
Q 040304 6 GSRIIVTTRSRDVASKM--GPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 83 (1000)
Q Consensus 6 gs~ilvTtR~~~v~~~~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~L 83 (1000)
.+-|.+|||...+.... .....+++++++.++..+++.+.+...+ .. --.+.+..|++.|+|.|-.+..++..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-~~---~~~~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-VE---IEPEAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-CC---cCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 55666777765443321 1134689999999999999998875322 11 123677889999999996665444432
Q ss_pred ccCCcHHHHHHHhhhccccCCCCC--CchHHHHHhhccCchhHHHHhh-hhcccCCCCCCChHHHHHHHHHcCCCccCcc
Q 040304 84 GSKQRVDEWRAILDSKIWDLEDET--EVPSVLKLSYHHLPSHLKRCFA-YCAILPKDYEFQEEELVLLWIAEGLIQQSKD 160 (1000)
Q Consensus 84 ~~~~~~~~w~~~l~~~~~~~~~~~--~~~~~l~~sy~~L~~~~k~~fl-~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~ 160 (1000)
|..+..........+. .....+...|..++++.+..+. ..+.+. +-.+..+++.... |.
T Consensus 206 --------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~-~~~~~~~~ia~~l---g~------ 267 (305)
T TIGR00635 206 --------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQ-GGPVGLKTLAAAL---GE------ 267 (305)
T ss_pred --------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhC-CCcccHHHHHHHh---CC------
Confidence 2221111000000000 2223355678888888777666 335554 3345555554432 11
Q ss_pred cchHHHHHHHHHH-HHHhccccccc
Q 040304 161 RKQADDLGSEYFH-DLLSRSLFQKS 184 (1000)
Q Consensus 161 ~~~~~~~~~~~l~-~L~~~~ll~~~ 184 (1000)
....+...++ .|++++|+...
T Consensus 268 ---~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 268 ---DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred ---CcchHHHhhhHHHHHcCCcccC
Confidence 1233566677 69999999754
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.46 E-value=0.077 Score=28.79 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=11.5
Q ss_pred CcceEEEcCCccccccc
Q 040304 293 KKLRVLSLGRYRISEVP 309 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp 309 (1000)
++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999998876
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.43 E-value=0.97 Score=49.27 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=89.7
Q ss_pred CcEEEEEcCChHHHhhc--CCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhhh
Q 040304 6 GSRIIVTTRSRDVASKM--GPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 83 (1000)
Q Consensus 6 gs~ilvTtR~~~v~~~~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~L 83 (1000)
.+-|..|||...+.... .....+++++++.++..+++.+.+...+. . --.+.+..|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~---~~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-E---IDEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 45566777754433321 11346899999999999999988754321 1 123678899999999995444333321
Q ss_pred ccCCcHHHHHHHhhhccccCCCC--CCchHHHHHhhccCchhHHHHhh-hhcccCCCCCCChHHHHHHHHHcCCCccCcc
Q 040304 84 GSKQRVDEWRAILDSKIWDLEDE--TEVPSVLKLSYHHLPSHLKRCFA-YCAILPKDYEFQEEELVLLWIAEGLIQQSKD 160 (1000)
Q Consensus 84 ~~~~~~~~w~~~l~~~~~~~~~~--~~~~~~l~~sy~~L~~~~k~~fl-~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~ 160 (1000)
..|..+.... ..... ......+...|..|++..+..+. ....|..+ .+..+.+.... |
T Consensus 227 ------~~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g------- 287 (328)
T PRK00080 227 ------RDFAQVKGDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G------- 287 (328)
T ss_pred ------HHHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C-------
Confidence 2232221110 01100 03334556677888888777775 55556544 46666654432 1
Q ss_pred cchHHHHHHHHHH-HHHhccccccc
Q 040304 161 RKQADDLGSEYFH-DLLSRSLFQKS 184 (1000)
Q Consensus 161 ~~~~~~~~~~~l~-~L~~~~ll~~~ 184 (1000)
...+.++..++ .|++++|++..
T Consensus 288 --~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 288 --EERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred --CCcchHHHHhhHHHHHcCCcccC
Confidence 11233454556 89999999754
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.18 E-value=0.01 Score=57.57 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=75.5
Q ss_pred ccccc-ccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCccccccccccc
Q 040304 305 ISEVP-TSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLGM 383 (1000)
Q Consensus 305 l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~i 383 (1000)
++.+| ..+.....-++||++.|++..+-..|..++.|..||++.|. +..+|..++.+..++.+++..| .....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccc
Confidence 33454 34667788999999999999998889999999999999987 8889999999999999999877 678899999
Q ss_pred cCCcccCccC
Q 040304 384 KELKCLRTLT 393 (1000)
Q Consensus 384 ~~L~~L~~L~ 393 (1000)
+++++++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999888874
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.60 E-value=0.3 Score=44.73 Aligned_cols=100 Identities=16% Similarity=0.312 Sum_probs=56.5
Q ss_pred hhhhhhhcCCCcceEEEcCCccccccc-ccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCC-hhh
Q 040304 283 MVISDLLPKCKKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLP-SSI 359 (1000)
Q Consensus 283 ~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp-~~i 359 (1000)
.+...+|..++.|+.+.+.++ +..++ .+|.++..|+.+.+.. .+..++.. |...++|+.+++..+ +..++ ..|
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f 100 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSF 100 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTT
T ss_pred EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhh
Confidence 344567888989999999885 77775 4688888899999976 66666655 778999999999764 34444 347
Q ss_pred hccccccceeecCcccccccccc-ccCCccc
Q 040304 360 GNLVNLYHLDIDGANRLCELPLG-MKELKCL 389 (1000)
Q Consensus 360 ~~L~~L~~L~L~~~~~l~~ip~~-i~~L~~L 389 (1000)
.+. +|+.+.+..+ +..++.. |.+.++|
T Consensus 101 ~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 101 SNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TT--T--EEE-TTB---SS----GGG-----
T ss_pred cCC-CceEEEECCC--ccEECCccccccccC
Confidence 776 8888887654 4455543 5555444
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.52 E-value=0.46 Score=47.67 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=27.1
Q ss_pred cccCCCCccEeecCCCccc-ccc----hhhhccCCCcEEeccCCcCcccCC
Q 040304 311 SIGCLKHLRYLNFSESWIK-CLP----EAITSLFNLEILILSDCRLLLKLP 356 (1000)
Q Consensus 311 ~~~~l~~L~~L~Ls~n~i~-~lp----~~i~~L~~L~~L~L~~~~~~~~lp 356 (1000)
++-.|++|+..+||.|-+. +.| +-|++-+.|.+|.+++|. ++.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 3456677777777776443 222 336667777777777776 44433
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.43 E-value=0.3 Score=29.96 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=11.0
Q ss_pred CCccEeecCCCcccccchh
Q 040304 316 KHLRYLNFSESWIKCLPEA 334 (1000)
Q Consensus 316 ~~L~~L~Ls~n~i~~lp~~ 334 (1000)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666544
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.43 E-value=0.3 Score=29.96 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=11.0
Q ss_pred CCccEeecCCCcccccchh
Q 040304 316 KHLRYLNFSESWIKCLPEA 334 (1000)
Q Consensus 316 ~~L~~L~Ls~n~i~~lp~~ 334 (1000)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666544
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.41 E-value=0.095 Score=50.23 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=53.9
Q ss_pred CccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccC-CCCccccccccCCCCCcCCCC--CCCCCC
Q 040304 877 TSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFH-YLVSLESLEVFSCPNFTSFPE--AGFPSS 953 (1000)
Q Consensus 877 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~l~~L~~L~l~~c~~l~~l~~--~~~~~s 953 (1000)
..++.++-+++. |.... ...+.-++++++|.+.+|..+.+..-+.++ -.++|+.|+|++|++|++..- ..-+++
T Consensus 101 ~~IeaVDAsds~-I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSS-IMYEG--LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCch-HHHHH--HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 345667777642 21111 112234577888888888766653222222 468899999999988887542 112688
Q ss_pred cceEeecCCchhh
Q 040304 954 LLSLKIIGCPLLG 966 (1000)
Q Consensus 954 L~~L~l~~c~~l~ 966 (1000)
|+.|.+++.|...
T Consensus 178 Lr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 178 LRRLHLYDLPYVA 190 (221)
T ss_pred hHHHHhcCchhhh
Confidence 8888888877544
No 85
>PRK06893 DNA replication initiation factor; Validated
Probab=84.04 E-value=4.2 Score=41.58 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=50.2
Q ss_pred CCcEEEEEcCC----------hHHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChh
Q 040304 5 PGSRIIVTTRS----------RDVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPL 74 (1000)
Q Consensus 5 ~gs~ilvTtR~----------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 74 (1000)
.|..|||||.+ .++..+++....++++++++++.++++.+.++..+-. . -+++..-+++++.|-.-
T Consensus 123 ~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~-l---~~~v~~~L~~~~~~d~r 198 (229)
T PRK06893 123 QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE-L---SDEVANFLLKRLDRDMH 198 (229)
T ss_pred cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHhccCCHH
Confidence 35566555443 4777777777889999999999999999998654321 1 13677888888887665
Q ss_pred hHHHH
Q 040304 75 AARAL 79 (1000)
Q Consensus 75 Al~~~ 79 (1000)
++..+
T Consensus 199 ~l~~~ 203 (229)
T PRK06893 199 TLFDA 203 (229)
T ss_pred HHHHH
Confidence 55433
No 86
>COG3903 Predicted ATPase [General function prediction only]
Probab=83.55 E-value=1.2 Score=47.94 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=120.9
Q ss_pred CCCcEEEEEcCChHHHhhcCCCceEeCCCCChH-hhHHHHHHhhcCCCC-CCCCcchHHHHHHHHHHccCChhhHHHHHh
Q 040304 4 APGSRIIVTTRSRDVASKMGPVKYYGLKLLSDD-DCWSVFVAHAFDSRD-AGTHGNFESTRQRVVEKCKGLPLAARALGG 81 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPlAl~~~g~ 81 (1000)
.+.-.|+.|+|+.-. +..+..+.+.+|+.- ++.++|...+..... ......-...+.+|.++.+|.|+||...+.
T Consensus 115 ~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaa 191 (414)
T COG3903 115 CPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAA 191 (414)
T ss_pred chhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHH
Confidence 344567778777443 345667888888776 799999887643321 111223456888999999999999998887
Q ss_pred hhccCCc-------HHHHHHHhhhccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccCCCCCCChHHHHHHHHHcCC
Q 040304 82 LLGSKQR-------VDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGL 154 (1000)
Q Consensus 82 ~L~~~~~-------~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~ 154 (1000)
..+.-.. .+.|...-.....-..........+.+||.-|..-.+.-|--++.|.-+|... ...|.+-|-
T Consensus 192 rv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~ 267 (414)
T COG3903 192 RVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGA 267 (414)
T ss_pred HHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCC
Confidence 7665421 12233221111111111225677899999999999999999999998776544 334545443
Q ss_pred CccCcccchHHHHHHHHHHHHHhcccccccC-CCCCeEEEchHHHHHHHHhhcc
Q 040304 155 IQQSKDRKQADDLGSEYFHDLLSRSLFQKSS-NSGSKFVMHDLVHDLAQWASGE 207 (1000)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~-~~~~~~~mhdlv~~~~~~~~~~ 207 (1000)
-. ..........+..+++++++...+ .+...|+.-+-+|.|+..+..+
T Consensus 268 ~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 268 DV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred cc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 21 112334555677889999987643 2233566666677777665544
No 87
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.89 E-value=4.4 Score=48.01 Aligned_cols=174 Identities=14% Similarity=0.193 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCChHHHhhc--CC-CceEeCCC----CChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhH
Q 040304 4 APGSRIIVTTRSRDVASKM--GP-VKYYGLKL----LSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAA 76 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~~--~~-~~~~~l~~----L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl 76 (1000)
.+|-..|||||+.--.... .. +...+++. ++.+|+-++|..... .+ --...++.+.+...|=+-|+
T Consensus 158 P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~----Ld~~~~~~L~~~teGW~~al 230 (894)
T COG2909 158 PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LP----LDAADLKALYDRTEGWAAAL 230 (894)
T ss_pred CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CC----CChHHHHHHHhhcccHHHHH
Confidence 3577899999996433211 11 12344443 789999999987641 11 12356788999999999999
Q ss_pred HHHHhhhccCCcHHHHHHHhhhccccCCCCCCchHH-HHHhhccCchhHHHHhhhhcccCCCCCCChHHHHHHHHHcCCC
Q 040304 77 RALGGLLGSKQRVDEWRAILDSKIWDLEDETEVPSV-LKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGLI 155 (1000)
Q Consensus 77 ~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~ 155 (1000)
..++=.+++..+.+.--..+... ...+.+- ..-=+|.||+++|..++-+|+++.- -++|+..-
T Consensus 231 ~L~aLa~~~~~~~~q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L------ 294 (894)
T COG2909 231 QLIALALRNNTSAEQSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL------ 294 (894)
T ss_pred HHHHHHccCCCcHHHHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH------
Confidence 99988888443322221111110 0001111 1112688999999999999998642 23344322
Q ss_pred ccCcccchHHHHHHHHHHHHHhcccccc-cCCCCCeEEEchHHHHHHHHhhcc
Q 040304 156 QQSKDRKQADDLGSEYFHDLLSRSLFQK-SSNSGSKFVMHDLVHDLAQWASGE 207 (1000)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~L~~~~ll~~-~~~~~~~~~mhdlv~~~~~~~~~~ 207 (1000)
+-++.+..++++|.++++... -++++.+|+.|.++.+|.+.-...
T Consensus 295 -------tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 -------TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -------hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 113447788999999998864 355677999999999998865443
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.67 E-value=0.95 Score=27.72 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.4
Q ss_pred CCcceEEEcCCccccccccc
Q 040304 292 CKKLRVLSLGRYRISEVPTS 311 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~lp~~ 311 (1000)
+++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46889999999999999864
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.67 E-value=0.95 Score=27.72 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.4
Q ss_pred CCcceEEEcCCccccccccc
Q 040304 292 CKKLRVLSLGRYRISEVPTS 311 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~lp~~ 311 (1000)
+++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46889999999999999864
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.90 E-value=1.3 Score=27.20 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=7.1
Q ss_pred CccccccccCCCCCc
Q 040304 929 VSLESLEVFSCPNFT 943 (1000)
Q Consensus 929 ~~L~~L~l~~c~~l~ 943 (1000)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 344445555554443
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.43 E-value=2.1 Score=26.18 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=11.8
Q ss_pred CccEeecCCCcccccch
Q 040304 317 HLRYLNFSESWIKCLPE 333 (1000)
Q Consensus 317 ~L~~L~Ls~n~i~~lp~ 333 (1000)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777777765
No 92
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=67.64 E-value=16 Score=37.30 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=39.8
Q ss_pred CcEEEEEcCChHHHhh--------cCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHH
Q 040304 6 GSRIIVTTRSRDVASK--------MGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAAR 77 (1000)
Q Consensus 6 gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~ 77 (1000)
.-.+|+++.+..+... .+....+.+++|+.+++++++...+-.. ... +.-.+..++|...+||.|..|.
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 3455566666655544 1222459999999999999998875322 111 1124566999999999998775
Q ss_pred H
Q 040304 78 A 78 (1000)
Q Consensus 78 ~ 78 (1000)
-
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 3
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.15 E-value=4.6 Score=24.80 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=7.9
Q ss_pred CCccEeecCCCcccc
Q 040304 316 KHLRYLNFSESWIKC 330 (1000)
Q Consensus 316 ~~L~~L~Ls~n~i~~ 330 (1000)
.+|++|+|++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 445555555555543
No 94
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=60.23 E-value=20 Score=37.61 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=42.6
Q ss_pred ceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhhh
Q 040304 26 KYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLL 83 (1000)
Q Consensus 26 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~L 83 (1000)
..+++++++.+|..+++...+..........=-.+..+.|++.++|.|..|..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 4689999999999999887653222110111124788999999999999998888775
No 95
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=58.65 E-value=1.5e+02 Score=33.24 Aligned_cols=162 Identities=12% Similarity=0.035 Sum_probs=88.8
Q ss_pred EEEEcCChHHHhhcC-------CCceEeCCCCChHhhHHHHHHhhcCC--CCCCCCcchHHHHHHHHHHccCChhhHHHH
Q 040304 9 IIVTTRSRDVASKMG-------PVKYYGLKLLSDDDCWSVFVAHAFDS--RDAGTHGNFESTRQRVVEKCKGLPLAARAL 79 (1000)
Q Consensus 9 ilvTtR~~~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPlAl~~~ 79 (1000)
||.++....+..... ....+.++|.+.++..+++..++-.. ......+.++.+++.+....|..+.|+.++
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll 255 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLL 255 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666655433221 12468999999999999998876221 111122233344444444456788888776
Q ss_pred Hhhh--c---cC--CcHHHHHHHhhhccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccCC--CCCCChHHHHH--H
Q 040304 80 GGLL--G---SK--QRVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILPK--DYEFQEEELVL--L 148 (1000)
Q Consensus 80 g~~L--~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~--~~~i~~~~l~~--~ 148 (1000)
-.+. + +. -+.++.+.+.+.. -.....-.+..|+.+.|..+..++...+ ...+...++.. .
T Consensus 256 ~~a~~~a~~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~ 326 (394)
T PRK00411 256 RRAGLIAEREGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYK 326 (394)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 4332 1 11 1345555555442 1234455688999988876666553322 13455555553 2
Q ss_pred HHHcCCCccCcccchHHHHHHHHHHHHHhcccccc
Q 040304 149 WIAEGLIQQSKDRKQADDLGSEYFHDLLSRSLFQK 183 (1000)
Q Consensus 149 w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 183 (1000)
.+++..-.. .........++.+|.+.++|..
T Consensus 327 ~l~~~~~~~----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 327 ELCEELGYE----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHHHHcCCC----cCcHHHHHHHHHHHHhcCCeEE
Confidence 233221111 1112335668899999999885
No 96
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.56 E-value=6 Score=23.53 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=5.1
Q ss_pred CCccEeecCCCcc
Q 040304 316 KHLRYLNFSESWI 328 (1000)
Q Consensus 316 ~~L~~L~Ls~n~i 328 (1000)
++|++|+|++|.|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3444455544444
No 97
>PRK09087 hypothetical protein; Validated
Probab=57.37 E-value=41 Score=34.21 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=50.4
Q ss_pred CCcEEEEEcC---------ChHHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhh
Q 040304 5 PGSRIIVTTR---------SRDVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLA 75 (1000)
Q Consensus 5 ~gs~ilvTtR---------~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlA 75 (1000)
.|..||+|++ ..++..++....+++++++++++-.+++.+.+-.. .... -+++..-|++++.|-.-+
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l---~~ev~~~La~~~~r~~~~ 191 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR-QLYV---DPHVVYYLVSRMERSLFA 191 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHhhhhHHH
Confidence 4778999987 35566666667899999999999999999887332 1211 146777788888877666
Q ss_pred HHH
Q 040304 76 ARA 78 (1000)
Q Consensus 76 l~~ 78 (1000)
+..
T Consensus 192 l~~ 194 (226)
T PRK09087 192 AQT 194 (226)
T ss_pred HHH
Confidence 653
No 98
>COG3899 Predicted ATPase [General function prediction only]
Probab=54.34 E-value=89 Score=38.93 Aligned_cols=162 Identities=17% Similarity=0.135 Sum_probs=102.2
Q ss_pred CceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhhhccC------CcHHHHHHHhhh
Q 040304 25 VKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGLLGSK------QRVDEWRAILDS 98 (1000)
Q Consensus 25 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~L~~~------~~~~~w~~~l~~ 98 (1000)
...|.+.||+..+...+.......... ...+.++.|+++-+|.|+-+.-+-+++... .+...|..=...
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~~~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~ 285 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLGCTKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS 285 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhCCccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh
Confidence 368999999999999999877632222 234789999999999999998877777653 223344321111
Q ss_pred ccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccCCCCCCChHHHHHHHHHcCCCccCcccchHHHHHHHHHHHHHhc
Q 040304 99 KIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGLIQQSKDRKQADDLGSEYFHDLLSR 178 (1000)
Q Consensus 99 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~ 178 (1000)
. ......+++.+.+..-.+.||...|...-..||+... |+.+.|...+-. .....+...++.|...
T Consensus 286 i-~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~ 351 (849)
T COG3899 286 L-GILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEG 351 (849)
T ss_pred c-CCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhh
Confidence 0 0111111345568888999999999999999999755 556666665522 2334455566666555
Q ss_pred ccccccC-----CCC-Ce-E-EEchHHHHHHHHhh
Q 040304 179 SLFQKSS-----NSG-SK-F-VMHDLVHDLAQWAS 205 (1000)
Q Consensus 179 ~ll~~~~-----~~~-~~-~-~mhdlv~~~~~~~~ 205 (1000)
.++..++ ... .. | -.||.+++.|-...
T Consensus 352 lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 352 LILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred ceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 5554221 111 11 2 35888888776433
No 99
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.59 E-value=14 Score=23.04 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=7.1
Q ss_pred CccEeecCCCccc
Q 040304 317 HLRYLNFSESWIK 329 (1000)
Q Consensus 317 ~L~~L~Ls~n~i~ 329 (1000)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=44.77 E-value=1e+02 Score=31.18 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=47.4
Q ss_pred CcEEEEEcCCh---------HHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhH
Q 040304 6 GSRIIVTTRSR---------DVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAA 76 (1000)
Q Consensus 6 gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl 76 (1000)
+.+||+||+.. .+...+.....+++.++++++-..++...+-.. ... --.+..+.+++.++|-|..+
T Consensus 123 ~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~-~~~---~~~~~l~~L~~~~~gn~r~L 198 (226)
T TIGR03420 123 GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR-GLQ---LPDEVADYLLRHGSRDMGSL 198 (226)
T ss_pred CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHhccCCHHHH
Confidence 45888988742 233333334679999999999999988765221 111 11356778888899998877
Q ss_pred HHHHh
Q 040304 77 RALGG 81 (1000)
Q Consensus 77 ~~~g~ 81 (1000)
.-+-.
T Consensus 199 ~~~l~ 203 (226)
T TIGR03420 199 MALLD 203 (226)
T ss_pred HHHHH
Confidence 65543
No 101
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=41.65 E-value=5e+02 Score=28.53 Aligned_cols=147 Identities=13% Similarity=0.010 Sum_probs=80.3
Q ss_pred ceEeCCCCChHhhHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHccCCh-hhHHHHHhhh--c---cC--CcHHHHHHHh
Q 040304 26 KYYGLKLLSDDDCWSVFVAHAFD-SRDAGTHGNFESTRQRVVEKCKGLP-LAARALGGLL--G---SK--QRVDEWRAIL 96 (1000)
Q Consensus 26 ~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~glP-lAl~~~g~~L--~---~~--~~~~~w~~~l 96 (1000)
..++++|.+.++-.+++..++-. .......++..+.+.+++....|-| .|+.++-.+. + +. -+.++.+.+.
T Consensus 192 ~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~ 271 (365)
T TIGR02928 192 EEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQ 271 (365)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 46899999999999999887631 1111122333445556677777776 4444332221 1 11 1234444443
Q ss_pred hhccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccC--CCCCCChHHHHHHHH-HcCCCccCcccchHHHHHHHHHH
Q 040304 97 DSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILP--KDYEFQEEELVLLWI-AEGLIQQSKDRKQADDLGSEYFH 173 (1000)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~--~~~~i~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~~l~ 173 (1000)
+.. -.+...-....|+.+.|..+..++..- .+..+...++...+. ....+. .....+.....++.
T Consensus 272 ~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~l~ 339 (365)
T TIGR02928 272 EKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIG---VDPLTQRRISDLLN 339 (365)
T ss_pred HHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcC---CCCCcHHHHHHHHH
Confidence 331 123445567889888876666554322 233466666655331 111111 11223456777889
Q ss_pred HHHhccccccc
Q 040304 174 DLLSRSLFQKS 184 (1000)
Q Consensus 174 ~L~~~~ll~~~ 184 (1000)
.|...++++..
T Consensus 340 ~l~~~gli~~~ 350 (365)
T TIGR02928 340 ELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCeEEE
Confidence 99999999864
No 102
>PRK08727 hypothetical protein; Validated
Probab=37.66 E-value=1.5e+02 Score=30.39 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=46.2
Q ss_pred CCcEEEEEcCC---------hHHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhh
Q 040304 5 PGSRIIVTTRS---------RDVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLA 75 (1000)
Q Consensus 5 ~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlA 75 (1000)
+|..||+|++. .++..++.....+++++++.++-.+++.+.+...+ .. --++...-+++.++|-.-+
T Consensus 125 ~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~---l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 125 AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LA---LDEAAIDWLLTHGERELAG 200 (233)
T ss_pred cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHhCCCCHHH
Confidence 46679999874 33444444456899999999999999998775432 11 1136677788888765443
Q ss_pred H
Q 040304 76 A 76 (1000)
Q Consensus 76 l 76 (1000)
+
T Consensus 201 ~ 201 (233)
T PRK08727 201 L 201 (233)
T ss_pred H
Confidence 3
No 103
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=35.11 E-value=4.3 Score=46.33 Aligned_cols=174 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhhhhhcCCCcceEEEcCCcccc-----cccccccCC-CCccEeecCCCccc-----ccchhhhccCCCcEEeccCCcC
Q 040304 283 MVISDLLPKCKKLRVLSLGRYRIS-----EVPTSIGCL-KHLRYLNFSESWIK-----CLPEAITSLFNLEILILSDCRL 351 (1000)
Q Consensus 283 ~~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l-~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~ 351 (1000)
..+-..+.....|..|++++|.+. .+-..+... ..|++|++..|.++ .+...+.....|+.+|++.|.+
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Q ss_pred ----cccCChhhhc----cccccceeecCcccccccccc-----ccCCcc-cCccCceEecCCCCCChhhccchhhhhhh
Q 040304 352 ----LLKLPSSIGN----LVNLYHLDIDGANRLCELPLG-----MKELKC-LRTLTNFIVGKDSGCALKDLKNWKFLRGR 417 (1000)
Q Consensus 352 ----~~~lp~~i~~----L~~L~~L~L~~~~~l~~ip~~-----i~~L~~-L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 417 (1000)
...++..+.. ..++++|.+.+| .++..--. +...++ +..| .
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el------------------------~ 239 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLREL------------------------D 239 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHH------------------------H
Q ss_pred hhhcCCCCCCChhhhhHHhhccc-cCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCC
Q 040304 418 LCISGLENVIDSQEANEALLRVK-KDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTR 489 (1000)
Q Consensus 418 l~~~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 489 (1000)
+.-+.+... ........+... ..+++++++.+.. ...........+..++.++.+.+..+....
T Consensus 240 l~~n~l~d~--g~~~L~~~l~~~~~~l~~l~l~~nsi------~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 240 LASNKLGDV--GVEKLLPCLSVLSETLRVLDLSRNSI------TEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhcCcchH--HHHHHHHHhcccchhhhhhhhhcCCc------cccchHHHHHHHhhhHHHHHhhcccCcccc
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=33.16 E-value=2e+02 Score=29.40 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=47.6
Q ss_pred cEEEEEcCCh---------HHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHH
Q 040304 7 SRIIVTTRSR---------DVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAAR 77 (1000)
Q Consensus 7 s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~ 77 (1000)
.+||+||+.. ++..++....+++++++++++-.+.+.+++-..+ ... -+++..-+++.+.|-.-++.
T Consensus 132 ~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l---~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 132 TRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FEL---PEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred CeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHhhcCCHHHHH
Confidence 4799999744 5555666667899999999999999988664321 211 24678888888887655443
Q ss_pred H
Q 040304 78 A 78 (1000)
Q Consensus 78 ~ 78 (1000)
.
T Consensus 208 ~ 208 (235)
T PRK08084 208 M 208 (235)
T ss_pred H
Confidence 3
No 105
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.07 E-value=23 Score=40.00 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=17.4
Q ss_pred CccccceeccccCCCc--cccCCC-CCCCCccEEEeccc
Q 040304 827 KISSLQELSLKKCPGI--VFFPEE-GLSTNLTYLEISGA 862 (1000)
Q Consensus 827 ~l~~L~~L~l~~~~~~--~~~~~~-~~l~~L~~L~L~~n 862 (1000)
+.+.+..+++++|+.. ..+... ...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4556666666666421 111111 33455555555555
No 106
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.54 E-value=16 Score=41.27 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=41.6
Q ss_pred CCceeEEEEcCCCCCC--CCCCC-CCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCC
Q 040304 499 FSNVAVLILKNCRRST--SLPSL-GQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTEN 575 (1000)
Q Consensus 499 ~~~L~~L~L~~~~~~~--~l~~~-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 575 (1000)
++.+..+.|++|.+.. .+..+ ...|+|+.|+|++|...-....+.. ..+...|++|-+.+|+..+.......-
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~----K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD----KLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh----hhcCCCHHHeeecCCccccchhhhHHH
Confidence 5566666677766432 22222 2457777777777622211111111 123466777777777664433321110
Q ss_pred -ccccccCCccceEE
Q 040304 576 -DEHVQAFPRLQKLF 589 (1000)
Q Consensus 576 -~~~~~~~~~L~~L~ 589 (1000)
......||+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 00113566666665
No 107
>PRK06620 hypothetical protein; Validated
Probab=29.47 E-value=1.7e+02 Score=29.52 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCh-------HHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChh
Q 040304 5 PGSRIIVTTRSR-------DVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPL 74 (1000)
Q Consensus 5 ~gs~ilvTtR~~-------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 74 (1000)
.|..||+|++.. ++..++....+++++++++++-.++..+.+-.. .... -+++..-|++++.|---
T Consensus 112 ~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l~l---~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 112 KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SVTI---SRQIIDFLLVNLPREYS 184 (214)
T ss_pred cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHccCCHH
Confidence 467899998732 344445555689999999999888887776321 1111 14677778888776543
No 108
>PRK05642 DNA replication initiation factor; Validated
Probab=23.65 E-value=3.2e+02 Score=27.91 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=46.9
Q ss_pred CCcEEEEEcCChH---------HHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhh
Q 040304 5 PGSRIIVTTRSRD---------VASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLA 75 (1000)
Q Consensus 5 ~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlA 75 (1000)
.|.+||+|++..- +..++....++++++++.++-.+.+.+++...+ ..- + +++..-+++++.|-.-+
T Consensus 129 ~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l-~--~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 129 SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHL-T--DEVGHFILTRGTRSMSA 204 (234)
T ss_pred cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCC-C--HHHHHHHHHhcCCCHHH
Confidence 4678888887532 222333346799999999999999987764332 111 1 46778888888877555
Q ss_pred HHHH
Q 040304 76 ARAL 79 (1000)
Q Consensus 76 l~~~ 79 (1000)
+..+
T Consensus 205 l~~~ 208 (234)
T PRK05642 205 LFDL 208 (234)
T ss_pred HHHH
Confidence 5443
Done!