Query 040304
Match_columns 1000
No_of_seqs 475 out of 3940
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 11:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.7E-52 1.6E-56 508.3 26.6 639 285-987 69-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 5E-45 1.7E-49 446.1 31.0 585 294-963 51-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.8E-39 9.5E-44 392.5 39.9 577 296-963 7-620 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 9.4E-39 3.2E-43 387.9 35.9 555 293-944 25-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.1E-37 1.1E-41 369.4 34.5 274 687-970 278-564 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 7.2E-37 2.5E-41 366.2 32.1 499 293-964 32-557 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-36 5.9E-41 362.9 30.6 500 279-917 42-558 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.7E-36 1.3E-40 360.1 31.8 99 294-393 34-135 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-34 5.1E-39 357.3 38.1 263 683-964 286-559 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-34 1.2E-38 353.9 33.6 512 292-945 23-563 (844)
11 4eco_A Uncharacterized protein 100.0 4.1E-34 1.4E-38 341.2 22.0 151 325-534 192-364 (636)
12 2z81_A CD282 antigen, TOLL-lik 100.0 6.2E-33 2.1E-37 328.0 31.4 461 293-888 26-508 (549)
13 4ecn_A Leucine-rich repeat pro 100.0 3.2E-33 1.1E-37 337.5 25.8 158 318-534 425-606 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 2.6E-32 9E-37 324.5 29.1 99 293-392 28-129 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 2.9E-32 1E-36 324.1 25.7 468 281-915 40-529 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.5E-32 1.5E-36 318.0 26.2 243 685-963 218-479 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-31 3.6E-36 317.4 29.0 456 281-869 38-514 (549)
18 4eco_A Uncharacterized protein 100.0 2.4E-32 8.1E-37 325.9 20.4 360 490-966 239-633 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 1E-30 3.5E-35 315.5 27.4 99 293-393 52-154 (635)
20 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-29 1.2E-33 302.3 31.5 507 279-890 62-580 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-29 9.9E-34 294.1 29.3 229 293-604 21-267 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 1.5E-29 5E-34 305.6 26.4 334 490-940 481-838 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-29 9.5E-34 296.6 27.9 96 292-392 30-126 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8E-28 2.7E-32 284.1 27.5 243 293-615 52-312 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 2E-27 7E-32 270.3 21.9 404 292-942 10-429 (454)
26 1jl5_A Outer protein YOPM; leu 99.9 1.3E-27 4.5E-32 271.8 18.9 353 479-963 75-427 (454)
27 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-26 5.2E-31 263.3 24.5 96 288-392 37-132 (457)
28 2a5y_B CED-4; apoptosis; HET: 99.9 2E-27 6.7E-32 277.0 10.5 196 4-210 263-473 (549)
29 3v47_A TOLL-like receptor 5B a 99.9 1.2E-25 4.1E-30 258.8 22.9 106 687-792 275-380 (455)
30 1o6v_A Internalin A; bacterial 99.9 2E-24 6.8E-29 248.5 26.9 340 293-793 46-385 (466)
31 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-25 1.1E-29 252.3 19.9 170 309-597 35-204 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 7.4E-25 2.5E-29 252.2 22.3 384 479-963 14-406 (455)
33 1o6v_A Internalin A; bacterial 99.9 1.4E-23 4.9E-28 241.3 28.0 317 289-721 64-385 (466)
34 2id5_A Lingo-1, leucine rich r 99.9 4E-23 1.4E-27 238.9 23.9 83 296-381 14-97 (477)
35 4fmz_A Internalin; leucine ric 99.9 1.2E-22 4.1E-27 224.4 22.6 98 289-392 40-137 (347)
36 2id5_A Lingo-1, leucine rich r 99.9 3.4E-22 1.2E-26 231.1 25.0 180 731-916 148-332 (477)
37 3o6n_A APL1; leucine-rich repe 99.9 4E-22 1.4E-26 223.9 20.7 91 291-382 43-135 (390)
38 4fmz_A Internalin; leucine ric 99.9 6.1E-22 2.1E-26 218.7 21.2 236 710-963 109-344 (347)
39 3o6n_A APL1; leucine-rich repe 99.9 2E-22 6.8E-27 226.3 17.6 285 282-636 58-349 (390)
40 3oja_B Anopheles plasmodium-re 99.9 3.6E-22 1.2E-26 236.8 18.8 288 281-637 63-356 (597)
41 1ogq_A PGIP-2, polygalacturona 99.9 2E-22 6.9E-27 218.0 12.4 212 286-602 69-286 (313)
42 4fcg_A Uncharacterized protein 99.9 4.9E-22 1.7E-26 216.2 14.6 219 292-605 80-298 (328)
43 4fcg_A Uncharacterized protein 99.9 2.1E-22 7.3E-27 219.1 11.6 243 236-592 58-310 (328)
44 3oja_B Anopheles plasmodium-re 99.9 2E-21 6.7E-26 230.5 20.5 90 292-382 50-141 (597)
45 2ft3_A Biglycan; proteoglycan, 99.8 3E-20 1E-24 203.4 21.0 87 294-383 34-121 (332)
46 1xku_A Decorin; proteoglycan, 99.8 1.4E-19 4.8E-24 198.0 23.2 94 294-392 32-126 (330)
47 1vt4_I APAF-1 related killer D 99.8 3E-21 1E-25 225.9 9.4 165 5-201 264-436 (1221)
48 3sfz_A APAF-1, apoptotic pepti 99.8 1.3E-20 4.4E-25 245.5 14.2 186 4-208 255-452 (1249)
49 3ogk_B Coronatine-insensitive 99.8 5.4E-21 1.8E-25 228.0 6.6 89 286-374 66-175 (592)
50 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-20 1.1E-24 200.6 11.5 248 688-965 51-304 (313)
51 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-18 4.3E-23 190.4 22.9 266 687-963 54-331 (332)
52 1xku_A Decorin; proteoglycan, 99.8 1.8E-18 6E-23 189.2 22.8 82 709-793 74-155 (330)
53 3g06_A SSPH2 (leucine-rich rep 99.8 9.9E-18 3.4E-22 196.1 22.4 79 293-381 40-118 (622)
54 3ogk_B Coronatine-insensitive 99.8 3.5E-20 1.2E-24 221.0 1.4 396 519-945 69-528 (592)
55 2z80_A TOLL-like receptor 2, v 99.8 2.4E-18 8.2E-23 190.0 16.0 96 294-392 32-129 (353)
56 2z66_A Variable lymphocyte rec 99.8 1.1E-18 3.9E-23 188.6 12.6 98 293-392 28-131 (306)
57 3zyi_A Leucine-rich repeat-con 99.8 1.3E-17 4.4E-22 190.8 22.0 223 709-940 73-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 2E-17 7E-22 188.4 22.4 230 700-940 55-290 (440)
59 2z80_A TOLL-like receptor 2, v 99.8 5.2E-18 1.8E-22 187.3 16.8 265 689-963 33-312 (353)
60 2z66_A Variable lymphocyte rec 99.8 4.5E-18 1.5E-22 183.9 14.8 225 296-601 10-240 (306)
61 1z6t_A APAF-1, apoptotic prote 99.7 3.7E-18 1.3E-22 202.5 13.9 183 4-206 255-450 (591)
62 3zyi_A Leucine-rich repeat-con 99.7 7.3E-18 2.5E-22 192.8 15.3 100 293-393 75-177 (452)
63 2p1m_B Transport inhibitor res 99.7 6.3E-20 2.1E-24 218.9 -2.6 87 499-594 65-167 (594)
64 3zyj_A Leucine-rich repeat-con 99.7 1.6E-17 5.6E-22 189.2 16.3 100 293-393 64-166 (440)
65 3g06_A SSPH2 (leucine-rich rep 99.7 5.6E-17 1.9E-21 189.7 19.5 59 316-381 40-98 (622)
66 1z7x_W Ribonuclease inhibitor; 99.7 6.2E-20 2.1E-24 211.4 -6.3 99 293-392 3-118 (461)
67 3o53_A Protein LRIM1, AGAP0063 99.7 3.5E-18 1.2E-22 185.3 7.4 78 294-373 11-90 (317)
68 1ozn_A Reticulon 4 receptor; N 99.7 7.6E-17 2.6E-21 172.1 17.4 81 293-373 32-115 (285)
69 2xwt_C Thyrotropin receptor; s 99.7 6.2E-17 2.1E-21 167.7 15.4 131 827-965 103-239 (239)
70 3o53_A Protein LRIM1, AGAP0063 99.7 1.5E-17 5.1E-22 180.3 10.4 212 709-939 32-247 (317)
71 1z7x_W Ribonuclease inhibitor; 99.7 2.6E-19 8.8E-24 206.3 -5.9 60 315-374 2-67 (461)
72 2o6q_A Variable lymphocyte rec 99.7 2.5E-16 8.6E-21 166.3 17.5 81 293-373 37-119 (270)
73 1ozn_A Reticulon 4 receptor; N 99.7 3.1E-16 1.1E-20 167.3 17.9 85 709-793 30-115 (285)
74 2p1m_B Transport inhibitor res 99.7 7.3E-19 2.5E-23 209.7 -3.2 424 471-939 62-541 (594)
75 3rfs_A Internalin B, repeat mo 99.7 8.8E-17 3E-21 170.0 12.5 207 289-607 37-245 (272)
76 3oja_A Leucine-rich immune mol 99.7 1.5E-16 5.1E-21 182.7 13.7 214 710-963 33-248 (487)
77 1wwl_A Monocyte differentiatio 99.7 1.8E-17 6.3E-22 179.1 5.7 131 826-963 170-307 (312)
78 2xwt_C Thyrotropin receptor; s 99.7 6.5E-16 2.2E-20 160.0 16.4 208 699-941 22-238 (239)
79 2z62_A TOLL-like receptor 4, v 99.7 4.4E-16 1.5E-20 165.3 13.5 99 293-392 28-129 (276)
80 1wwl_A Monocyte differentiatio 99.6 1.6E-16 5.4E-21 171.8 7.6 223 295-565 65-308 (312)
81 1h6u_A Internalin H; cell adhe 99.6 1E-15 3.4E-20 164.8 13.4 97 290-392 38-134 (308)
82 1p9a_G Platelet glycoprotein I 99.6 3.6E-15 1.2E-19 158.7 17.5 198 732-963 7-206 (290)
83 1p9a_G Platelet glycoprotein I 99.6 2.6E-15 9E-20 159.7 16.3 99 289-392 6-105 (290)
84 2z62_A TOLL-like receptor 4, v 99.6 2.7E-15 9.3E-20 159.2 16.3 205 709-941 26-236 (276)
85 2o6q_A Variable lymphocyte rec 99.6 7.2E-15 2.4E-19 155.1 18.5 176 759-963 37-216 (270)
86 4ay9_X Follicle-stimulating ho 99.6 5.8E-15 2E-19 162.2 17.8 226 699-938 20-255 (350)
87 3oja_A Leucine-rich immune mol 99.6 2.8E-15 9.7E-20 172.0 12.5 234 684-937 31-270 (487)
88 4ay9_X Follicle-stimulating ho 99.6 4.6E-14 1.6E-18 155.0 20.0 237 714-963 12-257 (350)
89 3rfs_A Internalin B, repeat mo 99.6 8.2E-15 2.8E-19 154.8 13.3 173 289-565 59-234 (272)
90 2ast_B S-phase kinase-associat 99.6 3.3E-16 1.1E-20 171.8 1.3 233 293-605 70-314 (336)
91 1h6u_A Internalin H; cell adhe 99.6 1.5E-14 5.3E-19 155.5 14.2 171 288-534 58-228 (308)
92 4glp_A Monocyte differentiatio 99.6 1.4E-14 4.7E-19 156.5 13.7 55 904-963 251-305 (310)
93 4glp_A Monocyte differentiatio 99.6 1.7E-14 5.8E-19 155.7 13.5 198 712-940 92-305 (310)
94 3m19_A Variable lymphocyte rec 99.5 5.1E-14 1.8E-18 146.7 15.4 96 294-392 15-112 (251)
95 2ast_B S-phase kinase-associat 99.5 4.9E-15 1.7E-19 162.4 4.6 155 733-888 91-258 (336)
96 2ca6_A RAN GTPase-activating p 99.5 3.9E-15 1.3E-19 166.4 2.0 89 286-374 25-133 (386)
97 1h6t_A Internalin B; cell adhe 99.5 1.2E-13 4.1E-18 147.1 11.3 97 290-392 43-139 (291)
98 4ezg_A Putative uncharacterize 99.5 6.6E-14 2.3E-18 139.8 8.6 101 290-392 41-141 (197)
99 3m19_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 140.3 14.0 99 293-392 35-136 (251)
100 3goz_A Leucine-rich repeat-con 99.5 2.9E-14 1E-18 157.5 5.6 110 282-392 11-143 (362)
101 2ca6_A RAN GTPase-activating p 99.4 2E-15 6.7E-20 168.9 -4.3 101 293-394 9-129 (386)
102 3cvr_A Invasion plasmid antige 99.4 2.2E-13 7.6E-18 157.2 12.3 87 293-392 59-145 (571)
103 2o6s_A Variable lymphocyte rec 99.4 9.6E-13 3.3E-17 132.7 12.9 76 296-373 10-86 (208)
104 1m9s_A Internalin B; cell inva 99.4 3.9E-13 1.3E-17 157.1 11.0 97 290-392 40-136 (605)
105 2v9t_B SLIT homolog 2 protein 99.4 1E-12 3.5E-17 133.4 12.4 93 296-391 14-108 (220)
106 3e6j_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 135.4 11.1 99 293-392 40-140 (229)
107 1m9s_A Internalin B; cell inva 99.4 6.5E-13 2.2E-17 155.2 10.4 93 294-392 22-114 (605)
108 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.8E-17 137.2 10.9 85 289-379 37-121 (263)
109 3cvr_A Invasion plasmid antige 99.4 2E-12 7E-17 149.1 14.1 180 736-945 60-246 (571)
110 3goz_A Leucine-rich repeat-con 99.4 1.3E-13 4.6E-18 152.2 3.4 81 297-378 2-94 (362)
111 2v70_A SLIT-2, SLIT homolog 2 99.4 2.7E-12 9.1E-17 130.3 12.1 94 296-392 14-110 (220)
112 3e6j_A Variable lymphocyte rec 99.4 3E-12 1E-16 130.9 12.4 146 295-534 21-170 (229)
113 4ezg_A Putative uncharacterize 99.3 2.6E-12 8.9E-17 128.1 11.2 148 758-939 43-191 (197)
114 1h6t_A Internalin B; cell adhe 99.3 2.3E-12 8E-17 137.1 11.1 173 757-946 44-216 (291)
115 2o6s_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 128.6 10.8 178 319-608 10-189 (208)
116 1xeu_A Internalin C; cellular 99.3 5.6E-13 1.9E-17 139.4 4.8 86 291-381 17-102 (263)
117 2v9t_B SLIT homolog 2 protein 99.3 2.8E-12 9.5E-17 130.2 8.9 114 280-394 43-159 (220)
118 1dce_A Protein (RAB geranylger 99.3 5.8E-14 2E-18 163.2 -5.5 199 313-611 346-566 (567)
119 1dce_A Protein (RAB geranylger 99.3 1.3E-13 4.3E-18 160.4 -3.5 99 479-589 467-566 (567)
120 2ell_A Acidic leucine-rich nuc 99.3 4.5E-12 1.5E-16 122.9 7.7 100 291-392 22-125 (168)
121 2xot_A Amphoterin-induced prot 99.3 6.2E-12 2.1E-16 138.6 9.5 75 297-373 22-98 (361)
122 2xot_A Amphoterin-induced prot 99.3 4.9E-12 1.7E-16 139.4 8.1 99 293-392 39-141 (361)
123 2v70_A SLIT-2, SLIT homolog 2 99.2 2.2E-11 7.4E-16 123.6 8.5 108 286-394 50-160 (220)
124 2wfh_A SLIT homolog 2 protein 99.2 7E-11 2.4E-15 116.9 11.4 82 296-380 13-94 (193)
125 1w8a_A SLIT protein; signaling 99.2 5.8E-11 2E-15 117.6 10.1 93 296-391 11-106 (192)
126 3sb4_A Hypothetical leucine ri 99.2 1.8E-11 6.1E-16 133.1 6.1 100 851-958 225-327 (329)
127 2je0_A Acidic leucine-rich nuc 99.2 3.1E-11 1.1E-15 114.2 6.8 105 286-393 35-146 (149)
128 2wfh_A SLIT homolog 2 protein 99.2 4E-11 1.4E-15 118.6 7.9 101 293-394 31-133 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.2 2E-11 7E-16 119.1 5.6 101 289-392 15-118 (176)
130 2je0_A Acidic leucine-rich nuc 99.2 2.6E-11 8.9E-16 114.7 6.2 101 292-394 16-120 (149)
131 4b8c_D Glucose-repressible alc 99.2 4.4E-12 1.5E-16 152.4 1.0 107 284-392 215-321 (727)
132 4b8c_D Glucose-repressible alc 99.1 4E-11 1.4E-15 144.0 8.9 95 289-384 243-337 (727)
133 2ell_A Acidic leucine-rich nuc 99.1 4.6E-11 1.6E-15 115.7 7.5 109 286-397 42-157 (168)
134 1a9n_A U2A', U2A'; complex (nu 99.1 1.1E-10 3.8E-15 113.8 8.8 102 292-396 41-149 (176)
135 1w8a_A SLIT protein; signaling 99.1 6.8E-11 2.3E-15 117.0 7.3 101 294-394 30-133 (192)
136 1ds9_A Outer arm dynein; leuci 99.0 4.5E-12 1.6E-16 126.5 -4.6 73 305-380 37-109 (198)
137 2o6r_A Variable lymphocyte rec 99.0 6.6E-10 2.3E-14 108.5 10.2 83 295-380 9-92 (177)
138 2o6r_A Variable lymphocyte rec 99.0 5.3E-10 1.8E-14 109.2 9.3 101 293-394 28-131 (177)
139 3sb4_A Hypothetical leucine ri 99.0 1.6E-09 5.5E-14 117.6 13.3 95 292-392 48-153 (329)
140 2r9u_A Variable lymphocyte rec 99.0 5.9E-10 2E-14 108.0 8.5 80 293-373 33-115 (174)
141 3g39_A Variable lymphocyte rec 99.0 6.8E-10 2.3E-14 107.2 8.0 94 296-392 12-107 (170)
142 1ds9_A Outer arm dynein; leuci 99.0 8.2E-12 2.8E-16 124.6 -5.8 104 286-393 41-146 (198)
143 2r9u_A Variable lymphocyte rec 99.0 6.3E-10 2.1E-14 107.8 7.4 98 296-397 15-115 (174)
144 4fdw_A Leucine rich hypothetic 99.0 4.1E-08 1.4E-12 108.7 22.0 249 688-981 136-395 (401)
145 3g39_A Variable lymphocyte rec 98.9 1.9E-09 6.7E-14 104.0 8.2 82 293-374 30-113 (170)
146 2ifg_A High affinity nerve gro 98.7 1.2E-08 4.3E-13 111.6 7.8 81 299-381 14-97 (347)
147 4fdw_A Leucine rich hypothetic 98.7 4.3E-07 1.5E-11 100.5 18.2 209 736-962 136-355 (401)
148 4fs7_A Uncharacterized protein 98.6 1.6E-06 5.4E-11 96.5 22.0 300 621-962 66-376 (394)
149 2ifg_A High affinity nerve gro 98.6 5.5E-08 1.9E-12 106.4 9.4 84 289-374 27-114 (347)
150 4fs7_A Uncharacterized protein 98.6 2.4E-06 8.3E-11 94.9 21.2 274 621-939 89-376 (394)
151 3e4g_A ATP synthase subunit S, 98.2 5.2E-07 1.8E-11 85.2 3.9 90 852-944 61-154 (176)
152 4gt6_A Cell surface protein; l 98.2 8.2E-05 2.8E-09 82.5 20.7 59 730-792 155-214 (394)
153 3un9_A NLR family member X1; l 98.1 3.3E-07 1.1E-11 100.4 0.2 100 292-392 71-188 (372)
154 4gt6_A Cell surface protein; l 98.1 0.00049 1.7E-08 76.2 24.7 122 827-960 263-386 (394)
155 3rw6_A Nuclear RNA export fact 97.9 7.8E-06 2.7E-10 83.6 6.1 80 313-394 167-258 (267)
156 2ra8_A Uncharacterized protein 97.9 5.1E-06 1.7E-10 90.0 3.9 17 777-793 166-182 (362)
157 4h09_A Hypothetical leucine ri 97.8 0.0021 7.3E-08 70.6 24.1 103 827-938 238-342 (379)
158 3rw6_A Nuclear RNA export fact 97.8 5E-06 1.7E-10 85.0 2.2 82 288-370 165-258 (267)
159 2ra8_A Uncharacterized protein 97.8 1E-05 3.5E-10 87.6 4.2 16 851-866 278-293 (362)
160 3e4g_A ATP synthase subunit S, 97.8 2.5E-05 8.6E-10 73.7 6.0 88 711-798 61-154 (176)
161 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.8E-10 78.5 3.6 108 285-393 28-157 (185)
162 4h09_A Hypothetical leucine ri 97.7 0.0033 1.1E-07 69.1 22.3 123 827-960 215-341 (379)
163 3un9_A NLR family member X1; l 97.6 1.5E-05 5E-10 87.2 1.9 59 315-373 154-221 (372)
164 1io0_A Tropomodulin; LRR prote 97.3 0.00011 3.8E-09 71.3 4.2 91 284-374 56-162 (185)
165 2qen_A Walker-type ATPase; unk 97.0 0.0072 2.5E-07 65.4 14.9 170 5-202 163-349 (350)
166 2fna_A Conserved hypothetical 96.8 0.011 3.8E-07 64.1 14.0 169 5-200 169-355 (357)
167 3rfe_A Platelet glycoprotein I 96.5 0.0032 1.1E-07 56.5 6.0 54 296-351 11-67 (130)
168 1w5s_A Origin recognition comp 96.0 0.019 6.6E-07 63.7 10.0 160 6-184 179-371 (412)
169 3rfe_A Platelet glycoprotein I 94.1 0.054 1.9E-06 48.4 5.2 54 856-915 12-66 (130)
170 1pgv_A TMD-1, tropomodulin TMD 93.7 0.061 2.1E-06 51.6 5.1 89 285-373 33-136 (197)
171 2qby_B CDC6 homolog 3, cell di 91.5 2.8 9.4E-05 45.4 15.4 159 5-184 163-339 (384)
172 1hqc_A RUVB; extended AAA-ATPa 91.0 0.81 2.8E-05 48.4 10.2 74 6-83 138-214 (324)
173 1pgv_A TMD-1, tropomodulin TMD 91.0 0.17 5.9E-06 48.5 4.3 89 285-373 62-167 (197)
174 2v1u_A Cell division control p 88.7 3.1 0.00011 45.0 12.9 161 5-184 166-351 (387)
175 1njg_A DNA polymerase III subu 86.3 1.5 5E-05 43.8 7.9 76 4-83 154-231 (250)
176 2qby_A CDC6 homolog 1, cell di 85.5 9.7 0.00033 40.9 14.6 162 5-184 162-348 (386)
177 1fnn_A CDC6P, cell division co 81.1 20 0.00068 38.4 14.8 163 5-184 158-351 (389)
178 2chg_A Replication factor C sm 63.6 15 0.00052 35.4 7.6 73 4-80 130-204 (226)
179 1sxj_B Activator 1 37 kDa subu 44.4 38 0.0013 35.0 7.2 73 5-81 136-211 (323)
180 3bos_A Putative DNA replicatio 33.5 86 0.0029 30.3 7.5 68 8-79 140-216 (242)
181 2vda_B Maltoporin; sugar trans 30.5 26 0.00088 19.9 1.5 19 68-86 7-25 (28)
182 1iqp_A RFCS; clamp loader, ext 25.6 1.5E+02 0.0053 30.2 8.2 73 5-81 139-213 (327)
183 2lz0_A Uncharacterized protein 24.5 79 0.0027 26.0 4.3 19 868-886 11-29 (100)
184 2lz0_A Uncharacterized protein 23.6 90 0.0031 25.6 4.5 40 898-939 14-53 (100)
185 2z4s_A Chromosomal replication 22.2 1.3E+02 0.0044 32.7 6.9 68 5-76 226-302 (440)
186 3pfi_A Holliday junction ATP-d 21.3 4.3E+02 0.015 27.0 10.7 67 7-79 155-226 (338)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-52 Score=508.28 Aligned_cols=639 Identities=15% Similarity=0.105 Sum_probs=434.6
Q ss_pred hhhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCccc-ccch--hhhccCCCcEEeccCCcCcccCChhh-h
Q 040304 285 ISDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIK-CLPE--AITSLFNLEILILSDCRLLLKLPSSI-G 360 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i-~ 360 (1000)
++..+..++.|++++++.+.+..+|..|+.+++|++|+|++|.+. .+|. .++++++|++|+|++|.+.+.+|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 566788999999999999999888899999999999999999887 4777 89999999999999999878888765 8
Q ss_pred ccccccceeecCcccccccccc---ccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhh
Q 040304 361 NLVNLYHLDIDGANRLCELPLG---MKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALL 437 (1000)
Q Consensus 361 ~L~~L~~L~L~~~~~l~~ip~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 437 (1000)
++++|++|++++|...+..|.. +.++++|++|+........... .
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------------~ 196 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--------------------------------V 196 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--------------------------------C
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--------------------------------c
Confidence 8999999999999655555655 7888888888532211110000 1
Q ss_pred ccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCC-CCCcccCCCCCCceeEEEEcCCCCCCCC
Q 040304 438 RVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGT-RFPSWIGDPSFSNVAVLILKNCRRSTSL 516 (1000)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l 516 (1000)
..+++|+.|+++++.... ....+..+++|++|+++++... .+|.++.. +++|++|++++|.+.+.+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~-----------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFST-----------GIPFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGPI 263 (768)
T ss_dssp TTCTTCCEEECCSSCCCS-----------CCCBCTTCCSCCEEECCSSCCCSCHHHHTTT--CSSCCEEECCSSCCEESC
T ss_pred ccCCcCCEEECcCCcCCC-----------CCcccccCCCCCEEECcCCcCCCcccHHHhc--CCCCCEEECCCCcccCcc
Confidence 234556666665433210 0112455666677777666654 23444443 667777777777666555
Q ss_pred CCCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCccc
Q 040304 517 PSLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKL 596 (1000)
Q Consensus 517 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 596 (1000)
|.. .+++|++|++++|...+.++..+.. .+++|+.|++++|.. .+..+..++.+++|++|++++ +.+
T Consensus 264 ~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~l------~~~~p~~~~~l~~L~~L~L~~-n~l 330 (768)
T 3rgz_A 264 PPL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNHF------YGAVPPFFGSCSLLESLALSS-NNF 330 (768)
T ss_dssp CCC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSEE------EECCCGGGGGCTTCCEEECCS-SEE
T ss_pred Ccc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCCcC------CCccchHHhcCCCccEEECCC-Ccc
Confidence 544 6667777777766554444443322 136677777777665 223344556667777777776 355
Q ss_pred ccCCC----CCCCCccEEEEecccccc---ccCCCCC-cceEEEEcCCCCcc--cccccC--CCCcceEEecCCcccccc
Q 040304 597 SGRLP----NHLPSLEKIVITECRQLV---ISLPSVP-ALCKLKIDGCKRLV--CDGLSE--SKSLNKMTLWNISEFENW 664 (1000)
Q Consensus 597 ~~~~p----~~l~~L~~L~l~~~~~l~---~~~~~l~-~L~~L~l~~~~~~~--~~~~~~--~~~L~~L~l~~~~~l~~~ 664 (1000)
++.+| ..+++|++|++.+|.... ..+..++ +|+.|++++|.... ...+.. +++|+.|+++++......
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 55555 235666677666664221 1111233 67777777765322 122222 566777777776544343
Q ss_pred c--cccccccceeEEecCCC-------CCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCcc
Q 040304 665 S--SQKFQNVEHLEIVGCEG-------SSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPV 735 (1000)
Q Consensus 665 ~--~~~~~~L~~L~l~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 735 (1000)
+ +..+++|+.|++++|.. +..+++|+.|++++|...+.+|.....+++|+.|++++|.....+|..+..++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 3 45667777777777653 34677888888888887777777767778888888888877777888888888
Q ss_pred ccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCC-CCCceE---
Q 040304 736 AIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALP-SSVVDV--- 811 (1000)
Q Consensus 736 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L--- 811 (1000)
+|++|++++|.....+|.++..+++|++|++++|...+.+|..+..+++|+.|++++|+....+|...+. ..+..+
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 8888888888777778888888888888888888777788888888888888888887655566654322 111111
Q ss_pred ------eeccccC------------ccCCCCC--CCccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccc
Q 040304 812 ------SIEECDK------------LKGPLPT--GKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVN 870 (1000)
Q Consensus 812 ------~l~~~~~------------l~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~ 870 (1000)
.+.+... +.+..+. ..++.++.++++.+...+.+|.. +.+++|++|+|++|.+.+.+|.
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence 1111100 1111111 14555666677766656666665 7789999999999999998887
Q ss_pred cccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCcc-ccCccccCCCCccccccccCCCCCcCCCCCC
Q 040304 871 WGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLE-RLSSKGFHYLVSLESLEVFSCPNFTSFPEAG 949 (1000)
Q Consensus 871 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 949 (1000)
.++.+++|+.|++++|...+.+|.. +..+++|+.|++++| +++ .+| ..+..+++|+.|++++|+..+.+|..+
T Consensus 651 -~l~~l~~L~~L~Ls~N~l~g~ip~~---l~~L~~L~~LdLs~N-~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 651 -EIGSMPYLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSN-KLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp -GGGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSS-CCEECCC-GGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred -HHhccccCCEEeCcCCccCCCCChH---HhCCCCCCEEECCCC-cccCcCC-hHHhCCCCCCEEECcCCcccccCCCch
Confidence 6999999999999998777788873 346799999999999 555 566 789999999999999998888999877
Q ss_pred CCCCcceEeecCCchhh----HhhhccCCCCCccccCCceEE
Q 040304 950 FPSSLLSLKIIGCPLLG----NKCRKDKGQEWPKIAHIPYVV 987 (1000)
Q Consensus 950 ~~~sL~~L~l~~c~~l~----~~~~~~~~~~~~~~~~~~~~~ 987 (1000)
.+.++....+.+||.+= ..|....+++|+||+|++.++
T Consensus 725 ~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 78888888888886442 279999999999999999865
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-45 Score=446.13 Aligned_cols=585 Identities=16% Similarity=0.083 Sum_probs=343.9
Q ss_pred cceEEEcCCccccc----ccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCCh--hhhccccccc
Q 040304 294 KLRVLSLGRYRISE----VPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPS--SIGNLVNLYH 367 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~----lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~ 367 (1000)
+++.|+|+++.+.. +|+++..+++|++++++.+.+..+|+.|+++++|++|||++|.+.+.+|. .++++++|++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 130 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCE
T ss_pred cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCE
Confidence 56899999998873 88899999999999999999988889999999999999999998888888 8999999999
Q ss_pred eeecCccccccccccc-cCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCcee
Q 040304 368 LDIDGANRLCELPLGM-KELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVL 446 (1000)
Q Consensus 368 L~L~~~~~l~~ip~~i-~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 446 (1000)
|++++|...+.+|..+ .++++|++|+... +.+.... ......+..+++|+.|
T Consensus 131 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~------------------------n~l~~~~---~~~~~~~~~l~~L~~L 183 (768)
T 3rgz_A 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSA------------------------NSISGAN---VVGWVLSDGCGELKHL 183 (768)
T ss_dssp EECCSSEEECCSSCCSCCCCTTCSEEECCS------------------------SCCEEET---HHHHHHTTCCTTCCEE
T ss_pred EECcCCccCCcCCHHHhccCCCCCEEECCC------------------------CccCCcC---ChhhhhhccCCCCCEE
Confidence 9999996666777665 7888888884311 1111100 0000113344555555
Q ss_pred EEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCC
Q 040304 447 KLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLK 526 (1000)
Q Consensus 447 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~ 526 (1000)
+++ ++......+. ..+++|++|++++|.+.+.+|.++.+++|+
T Consensus 184 ~Ls----------------------------------~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 226 (768)
T 3rgz_A 184 AIS----------------------------------GNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226 (768)
T ss_dssp ECC----------------------------------SSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred ECC----------------------------------CCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence 554 3332221111 124555555555555554444455555555
Q ss_pred eEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCC--
Q 040304 527 DLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHL-- 604 (1000)
Q Consensus 527 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l-- 604 (1000)
+|++++|...+.++..+. .+++|+.|++++|....... . ..+++|++|++++ +.+++.+|..+
T Consensus 227 ~L~Ls~n~l~~~~~~~l~------~l~~L~~L~Ls~n~l~~~~~------~--~~l~~L~~L~L~~-n~l~~~ip~~~~~ 291 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAIS------TCTELKLLNISSNQFVGPIP------P--LPLKSLQYLSLAE-NKFTGEIPDFLSG 291 (768)
T ss_dssp EEECCSSCCCSCHHHHTT------TCSSCCEEECCSSCCEESCC------C--CCCTTCCEEECCS-SEEEESCCCCSCT
T ss_pred EEECcCCcCCCcccHHHh------cCCCCCEEECCCCcccCccC------c--cccCCCCEEECcC-CccCCccCHHHHh
Confidence 555555543333333322 24555555555554321111 0 1345555555555 24444444332
Q ss_pred --CCccEEEEecccc---ccccCCCCCcceEEEEcCCCCc-cc--ccccCCCCcceEEecCCccccccc--ccccc-ccc
Q 040304 605 --PSLEKIVITECRQ---LVISLPSVPALCKLKIDGCKRL-VC--DGLSESKSLNKMTLWNISEFENWS--SQKFQ-NVE 673 (1000)
Q Consensus 605 --~~L~~L~l~~~~~---l~~~~~~l~~L~~L~l~~~~~~-~~--~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~-~L~ 673 (1000)
++|++|++.+|.. ....+..+++|+.|++++|... .. ..+..+++|++|+++++......+ ...+. +|+
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 4455555554431 1122334555555555555432 11 124555555555555543222222 12222 555
Q ss_pred eeEEecCCC-------CC--ccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecC
Q 040304 674 HLEIVGCEG-------SS--TCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISN 744 (1000)
Q Consensus 674 ~L~l~~~~~-------~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~ 744 (1000)
.|++++|.. .. .+++|++|++++|.....+|.....+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 555555432 11 144555555555555544554444455566666655544445555555555666666665
Q ss_pred CCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCC-CCCCCCceEeeccccCccCCC
Q 040304 745 CSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPED-ALPSSVVDVSIEECDKLKGPL 823 (1000)
Q Consensus 745 ~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~ 823 (1000)
|.....+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|.....+|.. +..++|+.|++++|.. ++.+
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~ 530 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNI 530 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EEEC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc-cCcC
Confidence 5544455555555555666666665555555555555666666666654433333332 1224555555555432 2223
Q ss_pred CC--CCccccceeccccCCCccccCCC-C----------------------------------------------CCCCc
Q 040304 824 PT--GKISSLQELSLKKCPGIVFFPEE-G----------------------------------------------LSTNL 854 (1000)
Q Consensus 824 ~~--~~l~~L~~L~l~~~~~~~~~~~~-~----------------------------------------------~l~~L 854 (1000)
|. ..+++|++|++++|+..+.+|.. . .++.+
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 32 25555666666655544444432 1 12223
Q ss_pred cEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccc
Q 040304 855 TYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESL 934 (1000)
Q Consensus 855 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L 934 (1000)
+.++++.|.+.+.+|. .+..+++|+.|++++|...+.+|.. +..+++|+.|++++|.--..+| ..++.+++|+.|
T Consensus 611 ~~~~l~~~~~~g~~~~-~~~~l~~L~~LdLs~N~l~g~ip~~---l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~L 685 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIPKE---IGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNIL 685 (768)
T ss_dssp CCSCTTSCEEEEECCC-SCSSSBCCCEEECCSSCCBSCCCGG---GGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEE
T ss_pred cccccccceecccCch-hhhccccccEEECcCCcccccCCHH---HhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEE
Confidence 3344444555565555 5788999999999998777788863 3467999999999994444666 789999999999
Q ss_pred cccCCCCCcCCCCC-CCCCCcceEeecCCc
Q 040304 935 EVFSCPNFTSFPEA-GFPSSLLSLKIIGCP 963 (1000)
Q Consensus 935 ~l~~c~~l~~l~~~-~~~~sL~~L~l~~c~ 963 (1000)
|+++|...+.+|.. ..+++|+.|++++|+
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 99999776788853 347899999999995
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.8e-39 Score=392.54 Aligned_cols=577 Identities=15% Similarity=0.091 Sum_probs=323.4
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceeecCcc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
++++++++.++.+|..+. +++++|+|++|.++.+|.. |+++++|++|++++|.+.+..|..|+++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN- 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-
Confidence 345555555555555443 4555555555555555543 555555555555555544444455555555555555555
Q ss_pred cccccccc-ccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecC
Q 040304 375 RLCELPLG-MKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRAR 453 (1000)
Q Consensus 375 ~l~~ip~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 453 (1000)
.+..+|.. ++++++|++|+... +.+..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~------------------------n~l~~~~-------------------------- 113 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMS------------------------NSIQKIK-------------------------- 113 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCS------------------------SCCCCCC--------------------------
T ss_pred ccCccChhhhccCCCCCEEECCC------------------------CccCccC--------------------------
Confidence 34444442 45555555442110 0000000
Q ss_pred CCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCC-CcccCCCCCCceeEEEEcCCCCCCCCC-C--CCCcCCCCeEE
Q 040304 454 RDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRF-PSWIGDPSFSNVAVLILKNCRRSTSLP-S--LGQLCSLKDLT 529 (1000)
Q Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~~l~-~--~~~l~~L~~L~ 529 (1000)
...+..+++|++|+++++..... |..+. .+++|++|++++|.+.+..+ . ...+++|+.|+
T Consensus 114 --------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 114 --------------NNPFVKQKNLITLDLSHNGLSSTKLGTQV--QLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp --------------SCTTTTCTTCCEEECCSSCCSCCCCCSSS--CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred --------------hhHccccCCCCEEECCCCcccccCchhhc--ccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 00112233344444444444333 23333 37888888888887765544 2 23457888888
Q ss_pred EeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCC----
Q 040304 530 IVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLP---- 605 (1000)
Q Consensus 530 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~---- 605 (1000)
+++|......+..+ ..+++|+.|++.++........ ..... ...++|++|++++ +.+.+..|..+.
T Consensus 178 L~~n~l~~~~~~~~------~~l~~L~~L~l~~~~l~~~~~~--~~~~~-l~~~~L~~L~L~~-n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 178 LSSNQIKEFSPGCF------HAIGRLFGLFLNNVQLGPSLTE--KLCLE-LANTSIRNLSLSN-SQLSTTSNTTFLGLKW 247 (680)
T ss_dssp CTTCCCCCBCTTGG------GGSSEECEEECTTCCCHHHHHH--HHHHH-HTTSCCCEEECTT-SCCCEECTTTTGGGGG
T ss_pred CCCCcccccChhhh------hhhhhhhhhhccccccChhhHH--HHHHH-hhhccccEEEccC-CcccccChhHhhccCc
Confidence 88875443333333 2367788888877654211100 00000 1247888888888 466655565542
Q ss_pred -CccEEEEecccccc---ccCCCCCcceEEEEcCCCCccc--ccccCCCCcceEEecCCccccccccccccccceeEEec
Q 040304 606 -SLEKIVITECRQLV---ISLPSVPALCKLKIDGCKRLVC--DGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVG 679 (1000)
Q Consensus 606 -~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~ 679 (1000)
+|++|++.+|.... ..+..+++|+.|++++|..... ..+..+++|+.|+++++..-..++...++.+.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~------ 321 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID------ 321 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC------
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC------
Confidence 37788877775321 2355677788888887754332 35667777777777653211111100000000
Q ss_pred CCCCCccCCcceeEeccCCCccccccCCCCCccccEEEEecccC-ceeccc-cccC--ccccceEeecCCCchhhhhhhc
Q 040304 680 CEGSSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYN-FKVLTS-ECQL--PVAIEALTISNCSNLESIAERF 755 (1000)
Q Consensus 680 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~-~~~~--~~~L~~L~L~~~~~l~~l~~~~ 755 (1000)
...+..+++|++|++++|......+..+..+++|++|++++|.. ...++. .+.. .++|+.|++++|......+..+
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence 00123445556666665555444444344455666666665532 122221 1111 1356666666655444445555
Q ss_pred CCcccccceeecccccccccc-ccccCCCCcceEeecCCCCccccCCCCC--CCCCceEeeccccCcc-CCCC--CCCcc
Q 040304 756 YDDACLRSILISSCDNLKSLP-IGLNNLSHLHRISIEGCHNLVSLPEDAL--PSSVVDVSIEECDKLK-GPLP--TGKIS 829 (1000)
Q Consensus 756 ~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~-~~~~--~~~l~ 829 (1000)
..+++|+.|++++|...+.+| ..+..+++|+.|++++|. +..++...+ .++|+.|++++|..-. +.+| ...++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 556666666666665544444 456666666777766643 333433322 2566666666654211 1122 34788
Q ss_pred ccceeccccCCCccccCCC-CCCCCccEEEeccccCcccc-------cccccccCCccceEEECCCCCcccccccccccc
Q 040304 830 SLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPL-------VNWGFHKLTSLRKLCINGCSDAASFPEVEKGVI 901 (1000)
Q Consensus 830 ~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~-------~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 901 (1000)
+|++|++++|......+.. ..+++|++|++++|.+.+.. +...+.++++|+.|++++| .++.+|. ..+.
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~--~~~~ 557 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV--EVFK 557 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT--TTTT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH--HHcc
Confidence 8888888888744333333 66788888888888876521 1123678888888888886 4666664 2345
Q ss_pred CCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCC---CCCCcceEeecCCc
Q 040304 902 LPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAG---FPSSLLSLKIIGCP 963 (1000)
Q Consensus 902 ~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~sL~~L~l~~c~ 963 (1000)
.+++|+.|++++| +++.++...+..+++|+.|++++| .++.++... .+++|+.|++++||
T Consensus 558 ~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 558 DLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred cccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 6788888888888 788888777888888999999888 677776532 35788888888887
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.4e-39 Score=387.88 Aligned_cols=555 Identities=15% Similarity=0.093 Sum_probs=302.5
Q ss_pred CcceEEEcCCcccccccc-cccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCCh-hhhcccccccee
Q 040304 293 KKLRVLSLGRYRISEVPT-SIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPS-SIGNLVNLYHLD 369 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 369 (1000)
+.+++|+|++|.++.+|. .|.++++|++|+|++|.+..++ ..|+++++|++|++++|. +..+|. .|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEE
Confidence 466777777777776643 4677777777777777766653 446777777777777766 334443 467777777777
Q ss_pred ecCcccccccc-ccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEE
Q 040304 370 IDGANRLCELP-LGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKL 448 (1000)
Q Consensus 370 L~~~~~l~~ip-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 448 (1000)
+++| .+..+| ..++++++|++|+.... .+....
T Consensus 104 L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n------------------------~l~~~~--------------------- 137 (680)
T 1ziw_A 104 LMSN-SIQKIKNNPFVKQKNLITLDLSHN------------------------GLSSTK--------------------- 137 (680)
T ss_dssp CCSS-CCCCCCSCTTTTCTTCCEEECCSS------------------------CCSCCC---------------------
T ss_pred CCCC-ccCccChhHccccCCCCEEECCCC------------------------cccccC---------------------
Confidence 7776 344444 34666666666632111 110000
Q ss_pred EeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcc-cCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCC
Q 040304 449 EWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSW-IGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLK 526 (1000)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~ 526 (1000)
...+..+++|+.|+++++....++.. +.....++|++|++++|.+.+..| .+..+++|+
T Consensus 138 -------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 138 -------------------LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp -------------------CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred -------------------chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhh
Confidence 00122233444444444444433321 111123566666666665554444 345556666
Q ss_pred eEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCC--ccceEEecCCcccccCCCC--
Q 040304 527 DLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFP--RLQKLFIHKCPKLSGRLPN-- 602 (1000)
Q Consensus 527 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~~~p~-- 602 (1000)
.|++.++.........+... ...++|+.|++++|.. .+..+..+..++ +|++|++++| .+++..|.
T Consensus 199 ~L~l~~~~l~~~~~~~~~~~---l~~~~L~~L~L~~n~l------~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~ 268 (680)
T 1ziw_A 199 GLFLNNVQLGPSLTEKLCLE---LANTSIRNLSLSNSQL------STTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSF 268 (680)
T ss_dssp EEECTTCCCHHHHHHHHHHH---HTTSCCCEEECTTSCC------CEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTT
T ss_pred hhhccccccChhhHHHHHHH---hhhccccEEEccCCcc------cccChhHhhccCcCCCCEEECCCC-CcCccCcccc
Confidence 66655543221111100000 0125566666666544 122222333333 2666666663 44433332
Q ss_pred -CCCCccEEEEecccccc---ccCCCCCcceEEEEcCCCCc-----------ccccccCCCCcceEEecCCccccccccc
Q 040304 603 -HLPSLEKIVITECRQLV---ISLPSVPALCKLKIDGCKRL-----------VCDGLSESKSLNKMTLWNISEFENWSSQ 667 (1000)
Q Consensus 603 -~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 667 (1000)
.+++|++|++.++.... ..+..+++|+.|+++++... ....+..+++|++|+++++... ..+..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~ 347 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSN 347 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC-CCCTT
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC-CCChh
Confidence 34556666666554221 24556778888888765321 1123555666666666654322 11100
Q ss_pred cccccceeEEecCCCCCccCCcceeEeccCCCc-cccccC-C--CCCccccEEEEecccCceeccccccCccccceEeec
Q 040304 668 KFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLL-TCLWTG-G--WLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTIS 743 (1000)
Q Consensus 668 ~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~-~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~ 743 (1000)
.+..+++|++|++++|... ..++.. + ...++|+.|++++|......+..+..+++|+.|+++
T Consensus 348 --------------~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 348 --------------MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp --------------TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred --------------HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 0223444555555444321 111111 0 011356666666665555555556666666666666
Q ss_pred CCCchhhhh-hhcCCcccccceeeccccccccccccccCCCCcceEeecCCCC--ccccCCC-CCCCCCceEeeccccCc
Q 040304 744 NCSNLESIA-ERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHN--LVSLPED-ALPSSVVDVSIEECDKL 819 (1000)
Q Consensus 744 ~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~--l~~l~~~-~~~~~L~~L~l~~~~~l 819 (1000)
+|.....++ ..+..+++|++|++++|......+..+..+++|+.|++++|.. +..+|.. ...++|+.|++++|. +
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l 492 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-I 492 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-C
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-C
Confidence 655443343 3445556666666666654444455566666666666666432 1222221 122466666666643 3
Q ss_pred cCCCC--CCCccccceeccccCCCcccc----CC-----CCCCCCccEEEeccccCcccccccccccCCccceEEECCCC
Q 040304 820 KGPLP--TGKISSLQELSLKKCPGIVFF----PE-----EGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCS 888 (1000)
Q Consensus 820 ~~~~~--~~~l~~L~~L~l~~~~~~~~~----~~-----~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 888 (1000)
++..+ ...+++|++|++++|...... |. ...+++|++|+|++|.+.. +|...|.++++|+.|++++|
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N- 570 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLN- 570 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS-
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHHHcccccCcceeECCCC-
Confidence 33122 246788888888888643321 11 2557888888888888774 66656888888888888875
Q ss_pred CccccccccccccCCCCcCeEEeccCCCccccCccccC-CCCccccccccCCCCCcC
Q 040304 889 DAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFH-YLVSLESLEVFSCPNFTS 944 (1000)
Q Consensus 889 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~l~~L~~L~l~~c~~l~~ 944 (1000)
.++.+|. ..+..+++|+.|++++| .++.+++..+. .+++|+.|++++||-..+
T Consensus 571 ~l~~l~~--~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 571 NLNTLPA--SVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCCCCCT--TTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCcCCH--hHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccC
Confidence 5666665 23345688888888888 78887766666 688888888888865443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-37 Score=369.37 Aligned_cols=274 Identities=17% Similarity=0.119 Sum_probs=160.9
Q ss_pred CCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhh-cCCccccccee
Q 040304 687 LDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAER-FYDDACLRSIL 765 (1000)
Q Consensus 687 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~ 765 (1000)
++|++|++++|... .+|.....+++|++|++++|......+..+..+++|+.|++++|.....++.. +..+++|++|+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 34444444444322 33333333445555555555433333444555555555555555433333322 44455555555
Q ss_pred eccccccccc--cccccCCCCcceEeecCCCCccccCCCCC--CCCCceEeeccccCccCCCC---CCCccccceecccc
Q 040304 766 ISSCDNLKSL--PIGLNNLSHLHRISIEGCHNLVSLPEDAL--PSSVVDVSIEECDKLKGPLP---TGKISSLQELSLKK 838 (1000)
Q Consensus 766 l~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~ 838 (1000)
+++|...... +..+..+++|+.|++++|. +..+++..+ .++|+.|++++|..... .+ ...+++|++|++++
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVK-DAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECC-TTCCTTTTCTTCCEEECTT
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCc-ccchhhhCcccCCEEECCC
Confidence 5555433222 3445555666666666532 333322222 24566666655432221 22 34788888888888
Q ss_pred CCCccccCCC-CCCCCccEEEeccccCccc-cc-ccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCC
Q 040304 839 CPGIVFFPEE-GLSTNLTYLEISGANIYKP-LV-NWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFP 915 (1000)
Q Consensus 839 ~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~-~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 915 (1000)
|......+.. ..+++|++|++++|.+.+. ++ ...+..+++|++|++++|. ++.++. ..+..+++|+.|++++|
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~Ls~N- 510 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ--HAFTSLKMMNHVDLSHN- 510 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEECCSS-
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccCh--hhhccccCCCEEECCCC-
Confidence 8765555554 6788899999999888762 22 1357888899999999875 444432 13346688999999988
Q ss_pred CccccCccccCCCCccccccccCCCCCcCCCCCC--CCCCcceEeecCCchhhHhhh
Q 040304 916 KLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAG--FPSSLLSLKIIGCPLLGNKCR 970 (1000)
Q Consensus 916 ~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~l~~c~~l~~~~~ 970 (1000)
.++.++...+..+++| .|++++| .++.++... .+++|+.|++++||- ...|.
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~c~ 564 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL-DCTCS 564 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE-ECSGG
T ss_pred ccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc-cccCC
Confidence 6776666788888999 9999998 566665432 267889999999873 33344
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.2e-37 Score=366.21 Aligned_cols=499 Identities=16% Similarity=0.109 Sum_probs=260.1
Q ss_pred CcceEEEcCCccccccc-ccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.|++|+|++|.++.++ ..|.++++|++|+|++|.+..++ ..|+++++|++|+|++|.+....|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 46677777777776663 36667777777777777766663 34667777777777776654444666777777777777
Q ss_pred cCcccccccc-ccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEE
Q 040304 371 DGANRLCELP-LGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLE 449 (1000)
Q Consensus 371 ~~~~~l~~ip-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 449 (1000)
++| .+..+| ..++++++|++|
T Consensus 112 ~~n-~l~~~~~~~~~~l~~L~~L--------------------------------------------------------- 133 (606)
T 3vq2_A 112 VET-KLASLESFPIGQLITLKKL--------------------------------------------------------- 133 (606)
T ss_dssp TTS-CCCCSSSSCCTTCTTCCEE---------------------------------------------------------
T ss_pred cCC-ccccccccccCCCCCCCEE---------------------------------------------------------
Confidence 766 344433 334444444443
Q ss_pred eecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCC--CCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCC
Q 040304 450 WRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGT--RFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLK 526 (1000)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~ 526 (1000)
+++++... .+|..+.. +++|++|++++|.+.+..+ .++.+++|+
T Consensus 134 -------------------------------~L~~n~l~~~~lp~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 134 -------------------------------NVAHNFIHSCKLPAYFSN--LTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp -------------------------------ECCSSCCCCCCCCGGGGT--CTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred -------------------------------eCCCCcccceechHhHhh--cCCCCEEEccCCcceecChhhhhhhhccc
Confidence 33333332 25666654 7777778877777665444 455554443
Q ss_pred ----eEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCC
Q 040304 527 ----DLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPN 602 (1000)
Q Consensus 527 ----~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 602 (1000)
+|++++|... .++..... ..+|+.|++++|.... ...+..+..++.|+.+.+.. ..+.+.
T Consensus 181 ~~l~~L~l~~n~l~-~~~~~~~~------~~~L~~L~L~~n~~~~-----~~~~~~~~~l~~L~~l~l~~-~~~~~~--- 244 (606)
T 3vq2_A 181 QVNLSLDMSLNPID-FIQDQAFQ------GIKLHELTLRGNFNSS-----NIMKTCLQNLAGLHVHRLIL-GEFKDE--- 244 (606)
T ss_dssp TCCCEEECTTCCCC-EECTTTTT------TCEEEEEEEESCCSCH-----HHHHHHHHTTTTCEEEEEEE-ECCTTS---
T ss_pred cccceeeccCCCcc-eeCccccc------CceeeeeeccCCccch-----hHHHHHhccccccccccccc-cccccC---
Confidence 6777666533 33322211 2356666666664311 11222334555555555543 111100
Q ss_pred CCCCccEEEEeccccccccCCCC--CcceEEEEcCCCCcc--cccccCCCCcceEEecCCccccccccccccccceeEEe
Q 040304 603 HLPSLEKIVITECRQLVISLPSV--PALCKLKIDGCKRLV--CDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIV 678 (1000)
Q Consensus 603 ~l~~L~~L~l~~~~~l~~~~~~l--~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~ 678 (1000)
..+..+. ...+..+ -.++.+.+..+..+. ...+.. +++|+.|++.
T Consensus 245 --~~l~~~~-------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~----------------------l~~L~~L~l~ 293 (606)
T 3vq2_A 245 --RNLEIFE-------PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC----------------------LANVSAMSLA 293 (606)
T ss_dssp --CCCSCCC-------GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGG----------------------GTTCSEEEEE
T ss_pred --CcccccC-------hHHhhhhhhccHhheecccccccccccccccc----------------------CCCCCEEEec
Confidence 0000000 0000000 023334442222111 011223 3333333333
Q ss_pred cCCC-----CCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhh--h
Q 040304 679 GCEG-----SSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLES--I 751 (1000)
Q Consensus 679 ~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~--l 751 (1000)
++.. +..+++|+.|++++|.. +.+|.. ..++|+.|++++|...... .+..+++|++|++++|..... +
T Consensus 294 ~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 294 GVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp SCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred CccchhhhhccccccCCEEEcccccC-cccccC--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch
Confidence 3322 22334445555555444 333321 3345555555555433322 233444555555554332111 1
Q ss_pred hhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCC---CCCc
Q 040304 752 AERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLP---TGKI 828 (1000)
Q Consensus 752 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~---~~~l 828 (1000)
+..+..+++|++|++++|. +..+|..+..+++|+.|++++ |..... .+ ...+
T Consensus 369 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~-----------------------n~l~~~-~~~~~~~~l 423 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQH-----------------------STLKRV-TEFSAFLSL 423 (606)
T ss_dssp CHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTT-----------------------SEEEST-TTTTTTTTC
T ss_pred hhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCC-----------------------CccCCc-cChhhhhcc
Confidence 3333344455555555443 333444444455555555554 332211 22 2367
Q ss_pred cccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcC
Q 040304 829 SSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLT 907 (1000)
Q Consensus 829 ~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 907 (1000)
++|++|++++|......|.. ..+++|++|++++|.+.+.+....+..+++|+.|++++|......|. .+..+++|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~ 500 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG---VFDTLHRLQ 500 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT---TTTTCTTCC
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh---hhcccccCC
Confidence 77888888877765555554 66778888888888777643333577778888888887643332232 234567788
Q ss_pred eEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCC--CCCCcceEeecCCch
Q 040304 908 WIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAG--FPSSLLSLKIIGCPL 964 (1000)
Q Consensus 908 ~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~l~~c~~ 964 (1000)
.|++++| .++.+.+..+..+++|+.|++++| .++.+|... ++.+|+.|++++||-
T Consensus 501 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 501 LLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 8888888 666654467778888888888888 467777531 234688888887763
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-36 Score=362.92 Aligned_cols=500 Identities=14% Similarity=0.075 Sum_probs=277.9
Q ss_pred CCCchhhhhhhcCCCcceEEEcCCcccccc-cccccCCCCccEeecCCCccccc-chhhhccCCCcEEeccCCcCcccCC
Q 040304 279 YISPMVISDLLPKCKKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLLKLP 356 (1000)
Q Consensus 279 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp 356 (1000)
+....+++..|.++++|++|+|++|.++.+ |.+|.++++|++|+|++|.+..+ |..|+++++|++|++++|.+....|
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence 334566677899999999999999999988 67899999999999999999988 6779999999999999999655555
Q ss_pred hhhhccccccceeecCccccc-cccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHH
Q 040304 357 SSIGNLVNLYHLDIDGANRLC-ELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEA 435 (1000)
Q Consensus 357 ~~i~~L~~L~~L~L~~~~~l~-~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~ 435 (1000)
..|+++++|++|++++|.... .+|..++++++|++|+.. .+.+......
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls------------------------~n~l~~~~~~------ 171 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS------------------------YNYIQTITVN------ 171 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC------------------------SSCCCEECTT------
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc------------------------CCcceecChh------
Confidence 779999999999999995333 578899999999988431 1111111000
Q ss_pred hhccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCC-CcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCC
Q 040304 436 LLRVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHG-NIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRST 514 (1000)
Q Consensus 436 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~ 514 (1000)
.+..+..++ .+..|+++++....+|..... ..+|++|++++|.+.+
T Consensus 172 -------------------------------~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~ 218 (606)
T 3vq2_A 172 -------------------------------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSS 218 (606)
T ss_dssp -------------------------------TTHHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCH
T ss_pred -------------------------------hhhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCccch
Confidence 000111111 245788888887777766554 3478888888887653
Q ss_pred -CCC-CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecC
Q 040304 515 -SLP-SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHK 592 (1000)
Q Consensus 515 -~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 592 (1000)
.+| .++.+++|+.+.+........ ..+..+.- .....+..+ .++++++..
T Consensus 219 ~~~~~~~~~l~~L~~l~l~~~~~~~~--------------~~l~~~~~-------------~~~~~l~~l-~l~~l~l~~ 270 (606)
T 3vq2_A 219 NIMKTCLQNLAGLHVHRLILGEFKDE--------------RNLEIFEP-------------SIMEGLCDV-TIDEFRLTY 270 (606)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTS--------------CCCSCCCG-------------GGGTTGGGS-EEEEEEECC
T ss_pred hHHHHHhccccccccccccccccccC--------------CcccccCh-------------HHhhhhhhc-cHhheeccc
Confidence 222 466777777777654321110 00000000 000000111 344555544
Q ss_pred CcccccCCCC--CCCCccEEEEecccccc-ccCCCCCcceEEEEcCCCCcccccccCCCCcceEEecCCccccccccccc
Q 040304 593 CPKLSGRLPN--HLPSLEKIVITECRQLV-ISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEFENWSSQKF 669 (1000)
Q Consensus 593 c~~l~~~~p~--~l~~L~~L~l~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 669 (1000)
++.+.+.+|. .+++|+.+++.++.... ..++.+++|+.|++++|.....+.+ .+++|+.|+++++..+...+
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~---- 345 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFK---- 345 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECC----
T ss_pred cccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccchh----
Confidence 4444443332 12333333333332100 0233345555555555543222222 33344444443332222111
Q ss_pred cccceeEEecCCCCCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCcee--ccccccCccccceEeecCCCc
Q 040304 670 QNVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKV--LTSECQLPVAIEALTISNCSN 747 (1000)
Q Consensus 670 ~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~L~~~~~ 747 (1000)
+..++ +|+.|++++|..... .+..+..+++|+.|++++|.
T Consensus 346 -------------~~~l~------------------------~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~- 387 (606)
T 3vq2_A 346 -------------KVALP------------------------SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG- 387 (606)
T ss_dssp -------------CCCCT------------------------TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-
T ss_pred -------------hccCC------------------------CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-
Confidence 11233 444444444422111 13344445555555555533
Q ss_pred hhhhhhhcCCcccccceeecccccccccc-ccccCCCCcceEeecCCCCccccCCC-CCCCCCceEeeccccCccC--CC
Q 040304 748 LESIAERFYDDACLRSILISSCDNLKSLP-IGLNNLSHLHRISIEGCHNLVSLPED-ALPSSVVDVSIEECDKLKG--PL 823 (1000)
Q Consensus 748 l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~~--~~ 823 (1000)
+..++..+..+++|+.|++++|...+..| ..+..+++|+.|++++|......|.. ...++|+.|++++|..... +.
T Consensus 388 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 33344444455555555555554443333 34555555555555554322222211 1113444444444322111 11
Q ss_pred CCCCccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccC
Q 040304 824 PTGKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVIL 902 (1000)
Q Consensus 824 ~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 902 (1000)
....+++|++|++++|...+..|.. ..+++|++|+|++|.+.+..|. .+..+++|+.|++++|. ++.+|.. +..
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~---~~~ 542 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKGI---LQH 542 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSC-CCCEESC---GGG
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCc-CcccCHh---Hhh
Confidence 2236677777777777655544444 6677777777777777764444 57777777777777764 5566652 223
Q ss_pred C-CCcCeEEeccCCCc
Q 040304 903 P-TSLTWIRISDFPKL 917 (1000)
Q Consensus 903 ~-~~L~~L~l~~~~~l 917 (1000)
+ ++|+.|++++||-.
T Consensus 543 l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SCTTCCEEECCSCCCC
T ss_pred hcccCcEEEccCCCcc
Confidence 3 35777777777443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-36 Score=360.06 Aligned_cols=99 Identities=17% Similarity=0.267 Sum_probs=84.1
Q ss_pred cceEEEcCCcccccc-cccccCCCCccEeecCCCccccc-chhhhccCCCcEEeccCCcCcccCChhhhccccccceeec
Q 040304 294 KLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDID 371 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~ 371 (1000)
.+++|+|++|.++.+ |.+|.++++|++|+|++|.+..+ |..|+++++|++|++++|.+....|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 689999999999988 67899999999999999998877 5669999999999999998777778889999999999999
Q ss_pred Cccccccc-cccccCCcccCccC
Q 040304 372 GANRLCEL-PLGMKELKCLRTLT 393 (1000)
Q Consensus 372 ~~~~l~~i-p~~i~~L~~L~~L~ 393 (1000)
+| .+..+ |..++++++|++|+
T Consensus 114 ~n-~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 114 QT-GISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TS-CCSCGGGSCCTTCTTCCEEE
T ss_pred cc-CcccCCcchhccCCcccEEE
Confidence 99 45555 55677888887773
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=357.29 Aligned_cols=263 Identities=17% Similarity=0.114 Sum_probs=201.1
Q ss_pred CCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhh-hhhcCCcccc
Q 040304 683 SSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESI-AERFYDDACL 761 (1000)
Q Consensus 683 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L 761 (1000)
+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|. +..+ +..+..+++|
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKL 364 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCC
Confidence 4456788888888888777666666777899999999997666668888999999999999975 4444 4456778999
Q ss_pred cceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCC----CCccccceeccc
Q 040304 762 RSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPT----GKISSLQELSLK 837 (1000)
Q Consensus 762 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~----~~l~~L~~L~l~ 837 (1000)
++|++++|. ++.++ .+++|+.|++++ +.+..+|.. ..+++.++++++. +++ ++. ..+++|++|+++
T Consensus 365 ~~L~Ls~N~-l~~i~----~~~~L~~L~l~~-N~l~~l~~~--~~~l~~L~ls~N~-l~~-l~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 365 QTLDLRDNA-LTTIH----FIPSIPDIFLSG-NKLVTLPKI--NLTANLIHLSENR-LEN-LDILYFLLRVPHLQILILN 434 (844)
T ss_dssp CEEEEETCC-SCCCS----SCCSCSEEEEES-CCCCCCCCC--CTTCCEEECCSCC-CCS-STTHHHHTTCTTCCEEEEE
T ss_pred CEEECCCCC-CCccc----CCCCcchhccCC-CCccccccc--ccccceeecccCc-ccc-CchhhhhhcCCccceeeCC
Confidence 999999974 44443 388999999999 456667654 4588999998854 443 222 378999999999
Q ss_pred cCCCccccCCC--CCCCCccEEEeccccCccc----ccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEe
Q 040304 838 KCPGIVFFPEE--GLSTNLTYLEISGANIYKP----LVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRI 911 (1000)
Q Consensus 838 ~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 911 (1000)
+|......+.. ..+++|++|++++|.+... .+...|..+++|+.|++++| .++.++. ..+..+++|+.|++
T Consensus 435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP--GVFSHLTALRGLSL 511 (844)
T ss_dssp SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT--TSSSSCCSCSEEEE
T ss_pred CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccCh--hHccchhhhheeEC
Confidence 99855433322 4579999999999998642 22235888999999999997 5666664 23456799999999
Q ss_pred ccCCCccccCccccCCCCccccccccCCCCCcCCCCCCCCCCcceEeecCCch
Q 040304 912 SDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGFPSSLLSLKIIGCPL 964 (1000)
Q Consensus 912 ~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~ 964 (1000)
++| +++.++...+. ++|+.|++++| .++.++.. .+.+|+.|++++||-
T Consensus 512 s~N-~l~~l~~~~~~--~~L~~L~Ls~N-~l~~~~~~-~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 512 NSN-RLTVLSHNDLP--ANLEILDISRN-QLLAPNPD-VFVSLSVLDITHNKF 559 (844)
T ss_dssp ESC-CCSSCCCCCCC--SCCCEEEEEEE-CCCCCCSC-CCSSCCEEEEEEECC
T ss_pred CCC-CCCccChhhhh--ccccEEECCCC-cCCCCChh-HhCCcCEEEecCCCc
Confidence 999 88888866666 89999999999 55555543 456899999998773
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=353.94 Aligned_cols=512 Identities=15% Similarity=0.089 Sum_probs=310.0
Q ss_pred CCcceEEEcCCcccccc-cccccCCCCccEeecCCC-ccccc-chhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 292 CKKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSES-WIKCL-PEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n-~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
.+.|++|+|++|.++.+ |.+|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.+....|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 35789999999999877 678899999999999998 55567 5669999999999999998767778889999999999
Q ss_pred eecCcccccccccc--ccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCcee
Q 040304 369 DIDGANRLCELPLG--MKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVL 446 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~--i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 446 (1000)
++++|.....+|.. ++++++|++|+.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~L---------------------------------------------------- 130 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDL---------------------------------------------------- 130 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEE----------------------------------------------------
T ss_pred eCcCCCCCcccccCccccccCCCCEEEC----------------------------------------------------
Confidence 99988544445554 666666666632
Q ss_pred EEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCC--CcccCCCCCCceeEEEEcCCCCCCCCC-CCCCc-
Q 040304 447 KLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRF--PSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQL- 522 (1000)
Q Consensus 447 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l- 522 (1000)
+++....+ +..+. .+++|++|++++|.+.+..+ .++.+
T Consensus 131 ------------------------------------s~N~l~~~~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 131 ------------------------------------SKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp ------------------------------------ESCCCCCCCCCGGGG--TCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ------------------------------------CCCcccccccchhHh--hCCCCCEEECCCCcCCeeCHHHccccc
Confidence 22211111 11122 14444444444444433322 22323
Q ss_pred -CCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCcccc---ccCCccceEEecCCccccc
Q 040304 523 -CSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHV---QAFPRLQKLFIHKCPKLSG 598 (1000)
Q Consensus 523 -~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~ 598 (1000)
++|+.|++++|......+..+...........|+.|++++|...... +..+ ...+.++.|.+..+ .+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~~l~~~~l~~L~l~~~-~~~~ 245 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI------TGNFSNAISKSQAFSLILAHH-IMGA 245 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT------TSGGGGTSCSCCBSEEECCSS-CCBC
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhH------HHHHHhhcCcccccceecccc-cccc
Confidence 44444444444333222222111000000112455555544321110 0000 01234445554421 1110
Q ss_pred CCCCCCCCccEEEEeccccccccCCC--CCcceEEEEcCCCCcc--cccccCCCCcceEEecCCccccccccccccccce
Q 040304 599 RLPNHLPSLEKIVITECRQLVISLPS--VPALCKLKIDGCKRLV--CDGLSESKSLNKMTLWNISEFENWSSQKFQNVEH 674 (1000)
Q Consensus 599 ~~p~~l~~L~~L~l~~~~~l~~~~~~--l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~ 674 (1000)
.+. ..++.. .. ...+.. .++|+.|++++|.... ...+..+++|+.|+++++. +.....
T Consensus 246 ~~~--~~~l~~-----~~--~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-------- 307 (844)
T 3j0a_A 246 GFG--FHNIKD-----PD--QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIAD-------- 307 (844)
T ss_dssp SSS--CSSSTT-----GG--GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECT--------
T ss_pred ccc--ccccCC-----CC--hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCCh--------
Confidence 000 000000 00 001111 2345555555543222 1223444444444444422 111110
Q ss_pred eEEecCCCCCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhh
Q 040304 675 LEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAER 754 (1000)
Q Consensus 675 L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~ 754 (1000)
..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|. +..++
T Consensus 308 ------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~-- 378 (844)
T 3j0a_A 308 ------EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH-- 378 (844)
T ss_dssp ------TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS--
T ss_pred ------HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc--
Confidence 113355677788888877766556666777899999999996544555678889999999999965 44333
Q ss_pred cCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCC---CCCCCCceEeeccccCccCCCC---CCCc
Q 040304 755 FYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPED---ALPSSVVDVSIEECDKLKGPLP---TGKI 828 (1000)
Q Consensus 755 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~~~---~~~l 828 (1000)
.+++|+.|++++|. +..+|.. ..+++.|++++ +.++.++.. ...++|+.|++++|.. ++..+ ...+
T Consensus 379 --~~~~L~~L~l~~N~-l~~l~~~---~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~ 450 (844)
T 3j0a_A 379 --FIPSIPDIFLSGNK-LVTLPKI---NLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSEN 450 (844)
T ss_dssp --SCCSCSEEEEESCC-CCCCCCC---CTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESCCC-CCCCSSSSSCSC
T ss_pred --CCCCcchhccCCCC-ccccccc---ccccceeeccc-CccccCchhhhhhcCCccceeeCCCCcc-cccccccccccC
Confidence 25899999999974 5566643 57899999999 456655432 2347999999999753 33111 2368
Q ss_pred cccceeccccCCCcccc-----CCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccC
Q 040304 829 SSLQELSLKKCPGIVFF-----PEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVIL 902 (1000)
Q Consensus 829 ~~L~~L~l~~~~~~~~~-----~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 902 (1000)
++|++|++++|...... +.. ..+++|++|+|++|.+.+ ++...|..+++|+.|++++| .++.+|... .
T Consensus 451 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~----~ 524 (844)
T 3j0a_A 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LPPGVFSHLTALRGLSLNSN-RLTVLSHND----L 524 (844)
T ss_dssp TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT-CCTTSSSSCCSCSEEEEESC-CCSSCCCCC----C
T ss_pred CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc-cChhHccchhhhheeECCCC-CCCccChhh----h
Confidence 99999999999754221 222 567999999999999987 55557899999999999997 577776511 3
Q ss_pred CCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCC
Q 040304 903 PTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSF 945 (1000)
Q Consensus 903 ~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l 945 (1000)
.++|+.|++++| +++.+++.. +++|+.|++++||...+-
T Consensus 525 ~~~L~~L~Ls~N-~l~~~~~~~---~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 525 PANLEILDISRN-QLLAPNPDV---FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CSCCCEEEEEEE-CCCCCCSCC---CSSCCEEEEEEECCCCSS
T ss_pred hccccEEECCCC-cCCCCChhH---hCCcCEEEecCCCccccc
Confidence 389999999999 777765443 468999999999765443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-34 Score=341.18 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=101.2
Q ss_pred CCcccccchhhhccCCCcEEeccCCcCccc-----------------CChhhh--ccccccceeecCccccccccccccC
Q 040304 325 ESWIKCLPEAITSLFNLEILILSDCRLLLK-----------------LPSSIG--NLVNLYHLDIDGANRLCELPLGMKE 385 (1000)
Q Consensus 325 ~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~-----------------lp~~i~--~L~~L~~L~L~~~~~l~~ip~~i~~ 385 (1000)
+|.++.+|..++++++|++|+|++|.+.+. +|..++ ++++|++|++++|...+.+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 467778999999999999999999986664 899888 9999999999999778889988999
Q ss_pred CcccCccCceEecCCCC-CChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecCCCCCCcchHHH
Q 040304 386 LKCLRTLTNFIVGKDSG-CALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRARRDGDSVDEVRE 464 (1000)
Q Consensus 386 L~~L~~L~~~~~~~~~~-~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 464 (1000)
+++|++|+...+....+ ..+..+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~-------------------------------------------------------- 295 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDW-------------------------------------------------------- 295 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHH--------------------------------------------------------
T ss_pred CCCCCEEECcCCCCCccccchHHH--------------------------------------------------------
Confidence 99988884311100000 000000
Q ss_pred HHHHhhcCCCCCcceEEEeeeCCCCCCc--ccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeEEEeecc
Q 040304 465 KNILDMLKPHGNIKRLVINSYGGTRFPS--WIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDLTIVRMS 534 (1000)
Q Consensus 465 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 534 (1000)
..+..+..+++|+.|+++++....+|. .+.. +++|++|++++|.+.+.+|.++.+++|++|++++|.
T Consensus 296 -~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 296 -QALADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp -HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred -HhhhccccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 011112233556666666666666666 5553 667777777777666556666666666666666654
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.2e-33 Score=327.96 Aligned_cols=461 Identities=18% Similarity=0.146 Sum_probs=227.7
Q ss_pred CcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.|++|+|++|.++.+ |.+|..+++|++|+|++|.+..+| ..|+++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5677777777777766 456777777777777777777666 44777777777777777744444445777777777777
Q ss_pred cCcccccc--ccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEE
Q 040304 371 DGANRLCE--LPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKL 448 (1000)
Q Consensus 371 ~~~~~l~~--ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 448 (1000)
++| .+.. +|..++++++|+
T Consensus 106 s~n-~l~~~~~~~~~~~l~~L~---------------------------------------------------------- 126 (549)
T 2z81_A 106 MGN-PYQTLGVTSLFPNLTNLQ---------------------------------------------------------- 126 (549)
T ss_dssp TTC-CCSSSCSSCSCTTCTTCC----------------------------------------------------------
T ss_pred CCC-cccccchhhhhhccCCcc----------------------------------------------------------
Confidence 777 3332 233344443333
Q ss_pred EeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeC-CCCCC-cccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCC
Q 040304 449 EWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYG-GTRFP-SWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSL 525 (1000)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p-~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L 525 (1000)
.|+++++. ...+| ..+. .+++|++|++++|.+.+..| .++.+++|
T Consensus 127 ------------------------------~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 127 ------------------------------TLRIGNVETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp ------------------------------EEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ------------------------------EEECCCCccccccCHhhhh--cccccCeeeccCCcccccChhhhhccccC
Confidence 33444443 33344 2344 37889999999988877665 67888888
Q ss_pred CeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCC
Q 040304 526 KDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLP 605 (1000)
Q Consensus 526 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~ 605 (1000)
++|+++++.. ..++..+. ..+++|+.|++++|........ .......+++|++|+++++ .+++..+..
T Consensus 175 ~~L~l~~n~~-~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-- 242 (549)
T 2z81_A 175 HHLTLHLSES-AFLLEIFA-----DILSSVRYLELRDTNLARFQFS---PLPVDEVSSPMKKLAFRGS-VLTDESFNE-- 242 (549)
T ss_dssp EEEEEECSBS-TTHHHHHH-----HSTTTBSEEEEESCBCTTCCCC---CCSSCCCCCCCCEEEEESC-EEEHHHHHH--
T ss_pred ceEecccCcc-cccchhhH-----hhcccccEEEccCCcccccccc---ccchhhhhhcccceecccc-ccchhHHHH--
Confidence 8888887753 22222221 1267777777777765221000 0011134566777777663 443211100
Q ss_pred CccEEEEeccccccccCCCCCcceEEEEcCCCCccc--------ccccCCCCcceEEecCCccccccccccccccceeEE
Q 040304 606 SLEKIVITECRQLVISLPSVPALCKLKIDGCKRLVC--------DGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEI 677 (1000)
Q Consensus 606 ~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l 677 (1000)
+...+..+++|+.+++++|..... ..+..+++++.|.+.++..-.......+..+
T Consensus 243 ------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~----- 305 (549)
T 2z81_A 243 ------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV----- 305 (549)
T ss_dssp ------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH-----
T ss_pred ------------HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh-----
Confidence 000111233344444444331110 1122233333333333210000000000000
Q ss_pred ecCCCCCccCCcceeEeccCCCccccccCC-CCCccccEEEEecccCceecc---ccccCccccceEeecCCCchhhhh-
Q 040304 678 VGCEGSSTCLDLESLSVFRCPLLTCLWTGG-WLPVTLKRLEIWCCYNFKVLT---SECQLPVAIEALTISNCSNLESIA- 752 (1000)
Q Consensus 678 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~L~~~~~l~~l~- 752 (1000)
....++|+.|++++|.. +.+|... ..+++|+.|++++|.....++ ..+..+++|+.|++++|. +..++
T Consensus 306 -----~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 378 (549)
T 2z81_A 306 -----YSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQK 378 (549)
T ss_dssp -----HHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHH
T ss_pred -----hhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-cccccc
Confidence 00123344444444432 2222221 123455555555554433332 223445556666665543 22222
Q ss_pred --hhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccc
Q 040304 753 --ERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISS 830 (1000)
Q Consensus 753 --~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~ 830 (1000)
..+..+++|++|++++| .++.+|..+..+++|+.|++++| .++.++.. .+++|+.|++++|. +++ ++ ..+++
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N~-l~~-~~-~~l~~ 452 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNNN-LDS-FS-LFLPR 452 (549)
T ss_dssp HHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSSC-CSC-CC-CCCTT
T ss_pred chhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccch-hcCCceEEECCCCC-hhh-hc-ccCCh
Confidence 23444556666666665 34455555555666666666663 24444322 23455555555542 332 11 24455
Q ss_pred cceeccccCCCccccCCCCCCCCccEEEeccccCcccccccccccCCccceEEECCCC
Q 040304 831 LQELSLKKCPGIVFFPEEGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCS 888 (1000)
Q Consensus 831 L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 888 (1000)
|++|++++|. +..+|....+++|++|+|++|.+.+. +...+..+++|+.|++++|+
T Consensus 453 L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 453 LQELYISRNK-LKTLPDASLFPVLLVMKISRNQLKSV-PDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSSC-CSSCCCGGGCTTCCEEECCSSCCCCC-CTTGGGGCTTCCEEECCSSC
T ss_pred hcEEECCCCc-cCcCCCcccCccCCEEecCCCccCCc-CHHHHhcCcccCEEEecCCC
Confidence 5555555553 22444434445555555555555442 22234455555555555544
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-33 Score=337.46 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=107.1
Q ss_pred ccEeecCC--CcccccchhhhccCCCcEEeccCCcCcc-----------------cCChhhh--ccccccceeecCcccc
Q 040304 318 LRYLNFSE--SWIKCLPEAITSLFNLEILILSDCRLLL-----------------KLPSSIG--NLVNLYHLDIDGANRL 376 (1000)
Q Consensus 318 L~~L~Ls~--n~i~~lp~~i~~L~~L~~L~L~~~~~~~-----------------~lp~~i~--~L~~L~~L~L~~~~~l 376 (1000)
++.+.+.. |.++.+|..|+++++|++|+|++|.+.+ .+|..++ ++++|++|++++|...
T Consensus 425 l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred hhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 33444433 6777799999999999999999999666 3898877 9999999999999778
Q ss_pred ccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecCCCC
Q 040304 377 CELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRARRDG 456 (1000)
Q Consensus 377 ~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 456 (1000)
+.+|..++++++|++|+...+.. +.. ....
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~-----------------------lsg-----~~iP---------------------- 534 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRG-----------------------ISA-----AQLK---------------------- 534 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTT-----------------------SCH-----HHHH----------------------
T ss_pred ccChHHHhCCCCCCEEECcCCCC-----------------------ccc-----ccch----------------------
Confidence 89999899999998884311100 000 0000
Q ss_pred CCcchHHHHHHH-hhcCCCCCcceEEEeeeCCCCCCc--ccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeEEEeec
Q 040304 457 DSVDEVREKNIL-DMLKPHGNIKRLVINSYGGTRFPS--WIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDLTIVRM 533 (1000)
Q Consensus 457 ~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~ 533 (1000)
.....+ ..+..+++|+.|+++++....+|. .+.. +++|+.|+|++|.+. .+|.++.+++|+.|++++|
T Consensus 535 ------~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 535 ------ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp ------HHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSS
T ss_pred ------HHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCC
Confidence 000011 134445667777777777777776 5653 677777777777766 6666666777777777666
Q ss_pred c
Q 040304 534 S 534 (1000)
Q Consensus 534 ~ 534 (1000)
.
T Consensus 606 ~ 606 (876)
T 4ecn_A 606 Q 606 (876)
T ss_dssp C
T ss_pred c
Confidence 4
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=324.50 Aligned_cols=99 Identities=23% Similarity=0.231 Sum_probs=66.9
Q ss_pred CcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.+++|+|++|.++.+ +.+|..+++|++|+|++|.+..+|. .|+++++|++|++++|.+....|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4677788888877766 3467777888888888877777754 4777888888888877754544566777788888887
Q ss_pred cCccccccccc-cccCCcccCcc
Q 040304 371 DGANRLCELPL-GMKELKCLRTL 392 (1000)
Q Consensus 371 ~~~~~l~~ip~-~i~~L~~L~~L 392 (1000)
++| .+..+|. .++++++|++|
T Consensus 108 ~~n-~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 108 VET-NLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TTS-CCCCSTTCSCTTCTTCCEE
T ss_pred ccc-ccccCCCccccccccccEE
Confidence 777 4454443 24444433333
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=324.06 Aligned_cols=468 Identities=17% Similarity=0.144 Sum_probs=254.5
Q ss_pred CchhhhhhhcCCCcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCCh-
Q 040304 281 SPMVISDLLPKCKKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPS- 357 (1000)
Q Consensus 281 ~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~- 357 (1000)
...+.+..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.+..+| ..|+++++|++|++++|. +..+|.
T Consensus 40 l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~ 118 (570)
T 2z63_A 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENF 118 (570)
T ss_dssp CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTC
T ss_pred cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCc
Confidence 3455667899999999999999999988 567999999999999999999887 569999999999999998 455554
Q ss_pred hhhccccccceeecCccccc-cccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHh
Q 040304 358 SIGNLVNLYHLDIDGANRLC-ELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEAL 436 (1000)
Q Consensus 358 ~i~~L~~L~~L~L~~~~~l~-~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 436 (1000)
.|+++++|++|++++|.... .+|..++++++|++|+. ..+.+.....
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l------------------------~~n~l~~~~~-------- 166 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL------------------------SSNKIQSIYC-------- 166 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC------------------------TTSCCCEECG--------
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeC------------------------cCCccceecH--------
Confidence 69999999999999994333 47888999999998842 1111111100
Q ss_pred hccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCc----ceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCC
Q 040304 437 LRVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNI----KRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRR 512 (1000)
Q Consensus 437 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~ 512 (1000)
..+..+.+| ..|+++++....+++.... ..+|++|++++|..
T Consensus 167 --------------------------------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 167 --------------------------------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFD 212 (570)
T ss_dssp --------------------------------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCS
T ss_pred --------------------------------HHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccc
Confidence 001111223 5777777776666554433 33688888887743
Q ss_pred CC-CCC-CCCCcCCCCeEEEeeccc-----ceeecccccCCCCCCCCC--CcceeeccCcccccccCCCCCCccccccCC
Q 040304 513 ST-SLP-SLGQLCSLKDLTIVRMSA-----LKGIGSEINGECCSKPFP--SLQTLYFEDLQVWEKWEPNTENDEHVQAFP 583 (1000)
Q Consensus 513 ~~-~l~-~~~~l~~L~~L~L~~~~~-----l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 583 (1000)
.. .++ .++.+++++.+.+..... +..+.... ...++ .++.+++.++..+ ....+..+..++
T Consensus 213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~-----~~~l~~l~l~~l~l~~~~~~-----~~~~~~~~~~l~ 282 (570)
T 2z63_A 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA-----LEGLCNLTIEEFRLAYLDYY-----LDDIIDLFNCLT 282 (570)
T ss_dssp CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT-----TGGGGGSEEEEEEEEETTEE-----ESCSTTTTGGGT
T ss_pred cccchhhhhcCccccceeeeccccccCchhhhhcchhh-----hccccccchhhhhhhcchhh-----hhhchhhhcCcC
Confidence 21 112 344555555554432210 00000000 00001 1122222222111 111122233344
Q ss_pred ccceEEecCCcccccCCCCCCCCccEEEEeccccccccCCCCCcceEEEEcCCCCcccccccCCCCcceEEecCCccccc
Q 040304 584 RLQKLFIHKCPKLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEFEN 663 (1000)
Q Consensus 584 ~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 663 (1000)
+|++|++++| .++ .+|. .+..+ +|+.|++++|... .
T Consensus 283 ~L~~L~l~~~-~l~-~l~~------------------~~~~~-~L~~L~l~~n~~~-----------------------~ 318 (570)
T 2z63_A 283 NVSSFSLVSV-TIE-RVKD------------------FSYNF-GWQHLELVNCKFG-----------------------Q 318 (570)
T ss_dssp TCSEEEEESC-EEC-SCCB------------------CCSCC-CCSEEEEESCBCS-----------------------S
T ss_pred cccEEEecCc-cch-hhhh------------------hhccC-CccEEeeccCccc-----------------------c
Confidence 4444444442 222 2222 11222 4444555444321 2
Q ss_pred cccccccccceeEEecCCCCCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCcee--ccccccCccccceEe
Q 040304 664 WSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKV--LTSECQLPVAIEALT 741 (1000)
Q Consensus 664 ~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~ 741 (1000)
++...+++|+.|++.+| ......+. ..+++|+.|++++|..... .+..+..+++|++|+
T Consensus 319 l~~~~l~~L~~L~l~~n-----------------~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 319 FPTLKLKSLKRLTFTSN-----------------KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CCBCBCSSCCEEEEESC-----------------BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred cCcccccccCEEeCcCC-----------------cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 22223333333333333 22222211 2234555555555533222 144555667777777
Q ss_pred ecCCCchhhhhhhcCCcccccceeecccccccccc-ccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCcc
Q 040304 742 ISNCSNLESIAERFYDDACLRSILISSCDNLKSLP-IGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLK 820 (1000)
Q Consensus 742 L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~ 820 (1000)
+++|. +..++..+..+++|++|++++|......+ ..+..+++|+.|++++|......+. .
T Consensus 380 l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~----------------- 440 (570)
T 2z63_A 380 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-I----------------- 440 (570)
T ss_dssp CCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT-T-----------------
T ss_pred CCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh-h-----------------
Confidence 77754 33344446666777888887765544444 3567778888888887543222221 1
Q ss_pred CCCCCCCccccceeccccCCCc-cccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccc
Q 040304 821 GPLPTGKISSLQELSLKKCPGI-VFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEK 898 (1000)
Q Consensus 821 ~~~~~~~l~~L~~L~l~~~~~~-~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 898 (1000)
...+++|++|++++|... ..+|.. ..+++|++|++++|.+.+..|. .+..+++|++|++++| .++.++. .
T Consensus 441 ----~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--~ 512 (570)
T 2z63_A 441 ----FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMASN-QLKSVPD--G 512 (570)
T ss_dssp ----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCSCCCT--T
T ss_pred ----hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccCCCEEeCCCC-cCCCCCH--H
Confidence 124555666666665533 234433 4556666666666665553333 4556666666666665 3333332 1
Q ss_pred cccCCCCcCeEEeccCC
Q 040304 899 GVILPTSLTWIRISDFP 915 (1000)
Q Consensus 899 ~~~~~~~L~~L~l~~~~ 915 (1000)
.+..+++|+.|++++|+
T Consensus 513 ~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhhcccCCcEEEecCCc
Confidence 22344566666666663
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=317.96 Aligned_cols=243 Identities=15% Similarity=0.078 Sum_probs=159.0
Q ss_pred ccCCcceeEeccCCCccccccC---CCCCccccEEEEecccCceeccccc-----cCccccceEeecCCCchhhhh-hhc
Q 040304 685 TCLDLESLSVFRCPLLTCLWTG---GWLPVTLKRLEIWCCYNFKVLTSEC-----QLPVAIEALTISNCSNLESIA-ERF 755 (1000)
Q Consensus 685 ~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~~-----~~~~~L~~L~L~~~~~l~~l~-~~~ 755 (1000)
.+++|+.|++++|......... ....++|+.|++++|...+.+|..+ ..+++|+.++++++.. .+| ..+
T Consensus 218 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~ 295 (520)
T 2z7x_B 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI 295 (520)
T ss_dssp GCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred cccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence 4567777877776543321110 0012367777777775444556555 5566666666665443 232 111
Q ss_pred CCc---ccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCC--CCCccc
Q 040304 756 YDD---ACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLP--TGKISS 830 (1000)
Q Consensus 756 ~~l---~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~--~~~l~~ 830 (1000)
..+ .+|+.|++++|... .++ ....+++|++|++++| . +++.+| ...+++
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~Ls~n-----------------------~-l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMV-HML-CPSKISPFLHLDFSNN-----------------------L-LTDTVFENCGHLTE 349 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCC-CCC-CCSSCCCCCEEECCSS-----------------------C-CCTTTTTTCCCCSS
T ss_pred hcccccCceeEEEcCCCccc-ccc-chhhCCcccEEEeECC-----------------------c-cChhhhhhhccCCC
Confidence 111 34556666555322 111 1134555555555553 2 222122 247889
Q ss_pred cceeccccCCCcc--ccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcC
Q 040304 831 LQELSLKKCPGIV--FFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLT 907 (1000)
Q Consensus 831 L~~L~l~~~~~~~--~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 907 (1000)
|++|++++|.... .+|.. ..+++|++|++++|.+.+.+|...+..+++|+.|++++|.....+|. ..+++|+
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~l~~~L~ 424 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-----CLPPRIK 424 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-----SCCTTCC
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh-----hhcccCC
Confidence 9999999997543 33433 77899999999999998877776688899999999999865555554 2347999
Q ss_pred eEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCC--CCCCcceEeecCCc
Q 040304 908 WIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAG--FPSSLLSLKIIGCP 963 (1000)
Q Consensus 908 ~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~l~~c~ 963 (1000)
.|++++| .++.+| ..+..+++|+.|++++| .++.+|... .+++|+.|++++||
T Consensus 425 ~L~Ls~N-~l~~ip-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 425 VLDLHSN-KIKSIP-KQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EEECCSS-CCCCCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-cccccc-hhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 9999999 888888 45559999999999999 788998742 37899999999987
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-31 Score=317.40 Aligned_cols=456 Identities=16% Similarity=0.105 Sum_probs=286.7
Q ss_pred CchhhhhhhcCCCcceEEEcCCccccccc-ccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcc-cCCh
Q 040304 281 SPMVISDLLPKCKKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLL-KLPS 357 (1000)
Q Consensus 281 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~-~lp~ 357 (1000)
...+++..|.++++|++|+|++|.++.++ .+|..+++|++|+|++|.+..+|.. |+++++|++|++++|.+.. ..|.
T Consensus 38 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 38 ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 34556678999999999999999999884 7899999999999999999999876 9999999999999998554 4577
Q ss_pred hhhccccccceeecCccccccccc-cccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHh
Q 040304 358 SIGNLVNLYHLDIDGANRLCELPL-GMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEAL 436 (1000)
Q Consensus 358 ~i~~L~~L~~L~L~~~~~l~~ip~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 436 (1000)
.++++++|++|++++|..++.+|. .++++++|++|
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L-------------------------------------------- 153 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL-------------------------------------------- 153 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE--------------------------------------------
T ss_pred hhhccCCccEEECCCCccccccCHhhhhcccccCee--------------------------------------------
Confidence 799999999999999965666663 45555544444
Q ss_pred hccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCC-CCcccCCCCCCceeEEEEcCCCCCCC
Q 040304 437 LRVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTR-FPSWIGDPSFSNVAVLILKNCRRSTS 515 (1000)
Q Consensus 437 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~L~~~~~~~~ 515 (1000)
+++++.... .|.++.. +++|++|++++|.....
T Consensus 154 --------------------------------------------~L~~n~l~~~~~~~l~~--l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 154 --------------------------------------------EIKALSLRNYQSQSLKS--IRDIHHLTLHLSESAFL 187 (549)
T ss_dssp --------------------------------------------EEEETTCCEECTTTTTT--CSEEEEEEEECSBSTTH
T ss_pred --------------------------------------------eccCCcccccChhhhhc--cccCceEecccCccccc
Confidence 333333333 4556654 89999999999976432
Q ss_pred CC-CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCc
Q 040304 516 LP-SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCP 594 (1000)
Q Consensus 516 l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 594 (1000)
.+ .++.+++|++|++++|...+...... .....+++|+.|+++++........ .....+..+++|+.+++++|
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~~~~~~~~L~~l~l~~~- 261 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPL---PVDEVSSPMKKLAFRGSVLTDESFN--ELLKLLRYILELSEVEFDDC- 261 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCC---SSCCCCCCCCEEEEESCEEEHHHHH--HHHGGGGGCTTCCEEEEESC-
T ss_pred chhhHhhcccccEEEccCCcccccccccc---chhhhhhcccceeccccccchhHHH--HHHHHhhhhccccccccccc-
Confidence 22 23568999999999987544211000 0113478999999999865322110 11122356789999999996
Q ss_pred ccccCCCCCCCCccEEEEeccccccccCCCCCcceEEEEcCCCCccccc-------ccCCCCcceEEecCCccccccccc
Q 040304 595 KLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCKRLVCDG-------LSESKSLNKMTLWNISEFENWSSQ 667 (1000)
Q Consensus 595 ~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~~L~~L~l~~~~~l~~~~~~ 667 (1000)
.+.+ ++.. +.. ....+..+++++.|.+.++..-.... +...++|+.|+++++. +..++..
T Consensus 262 ~~~~-~~~~-~~~----------~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~ 328 (549)
T 2z81_A 262 TLNG-LGDF-NPS----------ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCS 328 (549)
T ss_dssp EEEC-CSCC-CCC----------TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHH
T ss_pred cccc-cccc-ccc----------chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHH
Confidence 3432 1110 000 00012234444455554443211111 1112344445544422 2222211
Q ss_pred cccccceeEEecCCCCCccCCcceeEeccCCCccccc---cCCCCCccccEEEEecccCceecc---ccccCccccceEe
Q 040304 668 KFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLW---TGGWLPVTLKRLEIWCCYNFKVLT---SECQLPVAIEALT 741 (1000)
Q Consensus 668 ~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~ 741 (1000)
. +..+++|++|++++|...+.++ ......++|+.|++++|.. +.++ ..+..+++|++|+
T Consensus 329 ~--------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 329 F--------------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp H--------------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEE
T ss_pred H--------------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCEEE
Confidence 0 0124455555555555544332 1123345666666666643 2222 3355667777777
Q ss_pred ecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccC
Q 040304 742 ISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKG 821 (1000)
Q Consensus 742 L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~ 821 (1000)
+++| .++.+|..+..+++|++|++++|. ++.+|..+ .++|+.|++++| .++.++ ...++|++|++++| .++.
T Consensus 394 Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~--~~~L~~L~Ls~N-~l~~~~--~~l~~L~~L~Ls~N-~l~~ 465 (549)
T 2z81_A 394 ISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLEVLDVSNN-NLDSFS--LFLPRLQELYISRN-KLKT 465 (549)
T ss_dssp CTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTS--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSS
T ss_pred CCCC-CCccCChhhcccccccEEECCCCC-cccccchh--cCCceEEECCCC-Chhhhc--ccCChhcEEECCCC-ccCc
Confidence 7775 445666666666777777777764 44554333 357777777775 444443 23457777887775 3444
Q ss_pred CCCC-CCccccceeccccCCCccccCCC-CCCCCccEEEeccccCccccc
Q 040304 822 PLPT-GKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLV 869 (1000)
Q Consensus 822 ~~~~-~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~ 869 (1000)
+|. ..+++|++|++++|...+..+.. ..+++|++|++++|++.+..+
T Consensus 466 -ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 466 -LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -CCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -CCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 543 37889999999999765554543 778999999999999877554
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=2.4e-32 Score=325.92 Aligned_cols=360 Identities=17% Similarity=0.165 Sum_probs=197.6
Q ss_pred CCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEEeecc-cce-eecccccCCCCCCCCCCcceeeccCcccc
Q 040304 490 FPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTIVRMS-ALK-GIGSEINGECCSKPFPSLQTLYFEDLQVW 566 (1000)
Q Consensus 490 ~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~-~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 566 (1000)
+|..+.-..+++|++|++++|.+.+.+| .++++++|++|++++|. ... .++..+..-.....+++|+.|++++|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l- 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL- 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-
Confidence 6776661127889999999998888777 68888889999888886 332 3444332100001136677777766654
Q ss_pred cccCCCCCCcc--ccccCCccceEEecCCcccccCCCCCCCCccEEEEeccccccccCCCCCcceEEEEcCCCCcccccc
Q 040304 567 EKWEPNTENDE--HVQAFPRLQKLFIHKCPKLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCKRLVCDGL 644 (1000)
Q Consensus 567 ~~~~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 644 (1000)
. ..+. .++.+++|++|++++ +.++|.+| .+.. +++|+.|++++|...
T Consensus 318 -----~-~ip~~~~l~~l~~L~~L~L~~-N~l~g~ip-~~~~------------------l~~L~~L~L~~N~l~----- 366 (636)
T 4eco_A 318 -----K-TFPVETSLQKMKKLGMLECLY-NQLEGKLP-AFGS------------------EIKLASLNLAYNQIT----- 366 (636)
T ss_dssp -----S-SCCCHHHHTTCTTCCEEECCS-CCCEEECC-CCEE------------------EEEESEEECCSSEEE-----
T ss_pred -----C-ccCchhhhccCCCCCEEeCcC-CcCccchh-hhCC------------------CCCCCEEECCCCccc-----
Confidence 1 2223 455666666666666 35554454 2211 123333333333200
Q ss_pred cCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCC-cceeEeccCCCccccccCCCCCccccEEEEecccC
Q 040304 645 SESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLD-LESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYN 723 (1000)
Q Consensus 645 ~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 723 (1000)
.++ ..+..+++ |+.|++++|...
T Consensus 367 ------------------~lp---------------~~l~~l~~~L~~L~Ls~N~l~----------------------- 390 (636)
T 4eco_A 367 ------------------EIP---------------ANFCGFTEQVENLSFAHNKLK----------------------- 390 (636)
T ss_dssp ------------------ECC---------------TTSEEECTTCCEEECCSSCCS-----------------------
T ss_pred ------------------ccc---------------HhhhhhcccCcEEEccCCcCc-----------------------
Confidence 000 00111223 344444443322
Q ss_pred ceeccccccCc--cccceEeecCCCchhhhhhhcC-------Ccccccceeecccccccccccc-ccCCCCcceEeecCC
Q 040304 724 FKVLTSECQLP--VAIEALTISNCSNLESIAERFY-------DDACLRSILISSCDNLKSLPIG-LNNLSHLHRISIEGC 793 (1000)
Q Consensus 724 l~~l~~~~~~~--~~L~~L~L~~~~~l~~l~~~~~-------~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c 793 (1000)
.+|..+... ++|+.|++++|.....+|..+. .+++|++|++++|. +..+|.. +..+++|+.|++++|
T Consensus 391 --~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 391 --YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp --SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSS
T ss_pred --ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCC
Confidence 333333322 2455555555544444444333 44577777777764 3355543 445777888888774
Q ss_pred CCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCC-C--CCCCccEEEeccccCcccccc
Q 040304 794 HNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE-G--LSTNLTYLEISGANIYKPLVN 870 (1000)
Q Consensus 794 ~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~--~l~~L~~L~L~~n~~~~~~~~ 870 (1000)
.++.+|...+... . ....++++|++|++++|... .+|.. . .+++|++|+|++|.+.+ +|.
T Consensus 468 -~l~~i~~~~~~~~------------~--~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 530 (636)
T 4eco_A 468 -MLTEIPKNSLKDE------------N--ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530 (636)
T ss_dssp -CCSBCCSSSSEET------------T--EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred -CCCCcCHHHhccc------------c--ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh
Confidence 4445554332100 0 00113457888888887644 56654 4 67888888888888777 665
Q ss_pred cccccCCccceEEECC------CCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcC
Q 040304 871 WGFHKLTSLRKLCING------CSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTS 944 (1000)
Q Consensus 871 ~~~~~l~~L~~L~l~~------~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 944 (1000)
.+..+++|+.|++++ |...+.+|. .+..+++|+.|++++| .++.+|.. +. ++|+.|++++|+ +..
T Consensus 531 -~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N-~l~~ip~~-~~--~~L~~L~Ls~N~-l~~ 601 (636)
T 4eco_A 531 -QPLNSSTLKGFGIRNQRDAQGNRTLREWPE---GITLCPSLTQLQIGSN-DIRKVNEK-IT--PNISVLDIKDNP-NIS 601 (636)
T ss_dssp -GGGGCSSCCEEECCSCBCTTCCBCCCCCCT---TGGGCSSCCEEECCSS-CCCBCCSC-CC--TTCCEEECCSCT-TCE
T ss_pred -hhhcCCCCCEEECCCCcccccCcccccChH---HHhcCCCCCEEECCCC-cCCccCHh-Hh--CcCCEEECcCCC-Ccc
Confidence 467788888888854 333444554 2334677777777777 55667633 33 677777777774 334
Q ss_pred CCCCCC----------CCCcceEeecCCchhh
Q 040304 945 FPEAGF----------PSSLLSLKIIGCPLLG 966 (1000)
Q Consensus 945 l~~~~~----------~~sL~~L~l~~c~~l~ 966 (1000)
++...+ +...+..++.+||.++
T Consensus 602 ~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 602 IDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp EECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred ccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 332111 1233456777787664
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1e-30 Score=315.52 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=79.1
Q ss_pred CcceEEEcCCccccccc-ccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCC-hhhhcccccccee
Q 040304 293 KKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLP-SSIGNLVNLYHLD 369 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~ 369 (1000)
+.+++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|+. |++|++|++|+|++|+ +..+| ..|+++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 36788999999988885 5788889999999999988888764 8889999999999887 44454 5588889999999
Q ss_pred ecCcccccccccc-ccCCcccCccC
Q 040304 370 IDGANRLCELPLG-MKELKCLRTLT 393 (1000)
Q Consensus 370 L~~~~~l~~ip~~-i~~L~~L~~L~ 393 (1000)
+++| .+..+|.. |+++++|++|+
T Consensus 131 Ls~N-~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 131 AVET-NLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTS-CCCCSTTCCCTTCTTCCEEE
T ss_pred CCCC-cCCCCChhhhhcCcccCeec
Confidence 9888 56666654 77888888774
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.4e-29 Score=302.27 Aligned_cols=507 Identities=16% Similarity=0.053 Sum_probs=268.9
Q ss_pred CCCchhhhhhhcCCCcceEEEcCCccccccc-ccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCC
Q 040304 279 YISPMVISDLLPKCKKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLP 356 (1000)
Q Consensus 279 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp 356 (1000)
+....+++..|.++++|++|+|++|.|+.+| .+|.++++|++|+|++|.++.+|.. |+++++|++|+|++|.+....+
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 4456677888999999999999999999995 5799999999999999999999865 8999999999999998544444
Q ss_pred hhhhccccccceeecCccccc--cccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhH
Q 040304 357 SSIGNLVNLYHLDIDGANRLC--ELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANE 434 (1000)
Q Consensus 357 ~~i~~L~~L~~L~L~~~~~l~--~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~ 434 (1000)
..|+++++|++|++++|. +. .+|..++.+++|++|+...+. ........+..+..+..
T Consensus 142 ~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~------------------ 201 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPL------------------ 201 (635)
T ss_dssp CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTT------------------
T ss_pred hhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhh------------------
Confidence 569999999999999994 44 457778999999998542211 11111222222222210
Q ss_pred HhhccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCC
Q 040304 435 ALLRVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRST 514 (1000)
Q Consensus 435 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~ 514 (1000)
....+.++.+....++..... ...+..+.+.++....
T Consensus 202 -----------------------------------------~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 202 -----------------------------------------LNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSL 238 (635)
T ss_dssp -----------------------------------------CCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSH
T ss_pred -----------------------------------------hhhhhhcccCcccccCccccc--chhhhhhhhhcccccc
Confidence 001112222222222222111 2233444444443211
Q ss_pred CCC--CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecC
Q 040304 515 SLP--SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHK 592 (1000)
Q Consensus 515 ~l~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 592 (1000)
.++ .+..++.++...+........................+....+..+.... ........+..+.+++.+.+.+
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY---YLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS---CEEECTTTTGGGTTCSEEEEES
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc---cccchhhhhhhhcccccccccc
Confidence 111 12223333333222111100000000000000001111111111110000 0000011112333444444444
Q ss_pred CcccccCCC-CCCCCccEEEEeccccccccCCCCCcceEEEEcCCCCcccccccCCCCcceEEecCCccccccc-ccccc
Q 040304 593 CPKLSGRLP-NHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEFENWS-SQKFQ 670 (1000)
Q Consensus 593 c~~l~~~~p-~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~ 670 (1000)
+ .+....+ ....+++.+++.+|.........+..|+.+.+.++..........+++|+.++++.+....... ...
T Consensus 316 ~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-- 392 (635)
T 4g8a_A 316 V-TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-- 392 (635)
T ss_dssp C-EEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH--
T ss_pred c-ccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc--
Confidence 2 1211100 1223344444444432222222344455555555543333334445555555555432211100 000
Q ss_pred ccceeEEecCCCCCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceecc-ccccCccccceEeecCCCchh
Q 040304 671 NVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLT-SECQLPVAIEALTISNCSNLE 749 (1000)
Q Consensus 671 ~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~L~~~~~l~ 749 (1000)
...+.+|+.+++..+.... .+......++|+.+++.++......+ ..+..+++++.++++.+....
T Consensus 393 ------------~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 393 ------------DFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp ------------HHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ------------hhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 0122344444444443322 12222344566666666554433322 345667778888888766555
Q ss_pred hhhhhcCCcccccceeecccccccc-ccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCc
Q 040304 750 SIAERFYDDACLRSILISSCDNLKS-LPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKI 828 (1000)
Q Consensus 750 ~l~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l 828 (1000)
..+..+..+++|+.|++++|..... +|..+..+++|+.|++++| .++.+++.. +.++
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~---------------------f~~l 517 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA---------------------FNSL 517 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT---------------------TTTC
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHH---------------------HcCC
Confidence 5566666678888888888775554 4667888888999999885 455554322 2367
Q ss_pred cccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccC-CccceEEECCCCCc
Q 040304 829 SSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKL-TSLRKLCINGCSDA 890 (1000)
Q Consensus 829 ~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~l~~~~~l 890 (1000)
++|++|+|++|......+.. ..+++|++|+|++|.+.+..+. .+..+ ++|++|++++|+..
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS-CTTCCCTTCCEEECTTCCBC
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH-HHHhhhCcCCEEEeeCCCCc
Confidence 77888888887643333333 6678888888888888774443 57776 57888888887643
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=294.09 Aligned_cols=229 Identities=20% Similarity=0.174 Sum_probs=137.7
Q ss_pred CcceEEEcCCccccccc-ccccCCCCccEeecCCCccccc-chhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
++|++|+|++|.++.++ ..|..+++|++|+|++|.++.+ |..|+++++|++|+|++|. +..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 57777777777777664 5677777777777777777766 4557777777777777776 4456664 6777777777
Q ss_pred cCccccc-cccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEE
Q 040304 371 DGANRLC-ELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLE 449 (1000)
Q Consensus 371 ~~~~~l~-~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 449 (1000)
++|...+ .+|..++++++|++|+...... ..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l------------------------~~------------------------ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHL------------------------EK------------------------ 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSC------------------------CG------------------------
T ss_pred cCCccccccchhhhccCCcceEEEecCccc------------------------ch------------------------
Confidence 7773322 3556677777777664322110 00
Q ss_pred eecCCCCCCcchHHHHHHHhhcCCCCCc--ceEEEeeeCC---CCCCcccCCCCCC-ceeEEEEcCCCCCCCCC--CCCC
Q 040304 450 WRARRDGDSVDEVREKNILDMLKPHGNI--KRLVINSYGG---TRFPSWIGDPSFS-NVAVLILKNCRRSTSLP--SLGQ 521 (1000)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~~~-~L~~L~L~~~~~~~~l~--~~~~ 521 (1000)
..+..+++| +.|+++++.. ...|.++.. +. ....+++++|...+.++ .+..
T Consensus 130 -------------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 130 -------------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKT 188 (520)
T ss_dssp -------------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTT
T ss_pred -------------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhc
Confidence 011112233 5666666554 234555443 22 34567777887776665 5678
Q ss_pred cCCCCeEEEeecc-------cceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCc
Q 040304 522 LCSLKDLTIVRMS-------ALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCP 594 (1000)
Q Consensus 522 l~~L~~L~L~~~~-------~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 594 (1000)
+++|+.|++++|. ..+.++ .+ ..+++|+.|+++++........ ...+ ....++|++|++++ +
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~-~l------~~l~~L~~L~l~~~~l~~~~~~-~~~~--~~~~~~L~~L~l~~-n 257 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILA-KL------QTNPKLSNLTLNNIETTWNSFI-RILQ--LVWHTTVWYFSISN-V 257 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHH-GG------GGCTTCCEEEEEEEEEEHHHHH-HHHH--HHHTSSCSEEEEEE-E
T ss_pred ccceeeccccccccccccceeecchh-hh------ccccchhhccccccccCHHHHH-HHHH--HhhhCcccEEEeec-c
Confidence 8999999998875 222222 22 2378888888887764221110 0000 01245889999988 4
Q ss_pred ccccCCCCCC
Q 040304 595 KLSGRLPNHL 604 (1000)
Q Consensus 595 ~l~~~~p~~l 604 (1000)
+++|.+|..+
T Consensus 258 ~l~~~~p~~~ 267 (520)
T 2z7x_B 258 KLQGQLDFRD 267 (520)
T ss_dssp EEESCCCCCC
T ss_pred cccCccccch
Confidence 6777777654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.5e-29 Score=305.63 Aligned_cols=334 Identities=16% Similarity=0.164 Sum_probs=191.0
Q ss_pred CCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEEeecccce--eecccccCCC-CCCCCCCcceeeccCccc
Q 040304 490 FPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTIVRMSALK--GIGSEINGEC-CSKPFPSLQTLYFEDLQV 565 (1000)
Q Consensus 490 ~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~--~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 565 (1000)
+|..+.-..+++|++|+|++|.+.+.+| .++++++|+.|++++|..+. .++..+.... ....+++|+.|++++|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 6666541127888888888888877777 67888888888888886333 2443322100 112355666666666654
Q ss_pred ccccCCCCCCcc--ccccCCccceEEecCCcccccCCCCCCCCccEEEEeccccccccCCCCCcceEEEEcCCCCccccc
Q 040304 566 WEKWEPNTENDE--HVQAFPRLQKLFIHKCPKLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCKRLVCDG 643 (1000)
Q Consensus 566 l~~~~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 643 (1000)
. ..+. .++.+++|+.|++++ +.++ .+| .+ ..+++|+.|++++|...
T Consensus 561 ~-------~ip~~~~l~~L~~L~~L~Ls~-N~l~-~lp-~~------------------~~L~~L~~L~Ls~N~l~---- 608 (876)
T 4ecn_A 561 E-------EFPASASLQKMVKLGLLDCVH-NKVR-HLE-AF------------------GTNVKLTDLKLDYNQIE---- 608 (876)
T ss_dssp C-------BCCCHHHHTTCTTCCEEECTT-SCCC-BCC-CC------------------CTTSEESEEECCSSCCS----
T ss_pred C-------ccCChhhhhcCCCCCEEECCC-CCcc-cch-hh------------------cCCCcceEEECcCCccc----
Confidence 2 2222 445666666666666 3444 444 11 22233444444443311
Q ss_pred ccCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCC-cceeEeccCCCccccccCCCCCccccEEEEeccc
Q 040304 644 LSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLD-LESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCY 722 (1000)
Q Consensus 644 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 722 (1000)
.++ ..+..+++ |+.|++++|...
T Consensus 609 -------------------~lp---------------~~l~~l~~~L~~L~Ls~N~L~---------------------- 632 (876)
T 4ecn_A 609 -------------------EIP---------------EDFCAFTDQVEGLGFSHNKLK---------------------- 632 (876)
T ss_dssp -------------------CCC---------------TTSCEECTTCCEEECCSSCCC----------------------
T ss_pred -------------------cch---------------HHHhhccccCCEEECcCCCCC----------------------
Confidence 000 00112233 444444444322
Q ss_pred CceeccccccCcc--ccceEeecCCCchhhhhh---hc--CCcccccceeeccccccccccccc-cCCCCcceEeecCCC
Q 040304 723 NFKVLTSECQLPV--AIEALTISNCSNLESIAE---RF--YDDACLRSILISSCDNLKSLPIGL-NNLSHLHRISIEGCH 794 (1000)
Q Consensus 723 ~l~~l~~~~~~~~--~L~~L~L~~~~~l~~l~~---~~--~~l~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~c~ 794 (1000)
.+|..+...+ +|+.|++++|.....+|. .. ..+++|+.|++++|. +..+|..+ ..+++|+.|++++|
T Consensus 633 ---~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N- 707 (876)
T 4ecn_A 633 ---YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN- 707 (876)
T ss_dssp ---SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-
T ss_pred ---cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-
Confidence 3333333332 255555555443322221 11 123578888888865 44666554 47888889998884
Q ss_pred CccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCC-C--CCCCccEEEeccccCccccccc
Q 040304 795 NLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE-G--LSTNLTYLEISGANIYKPLVNW 871 (1000)
Q Consensus 795 ~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~--~l~~L~~L~L~~n~~~~~~~~~ 871 (1000)
.+..+|...+.. .. ....++++|++|++++|... .+|.. . .+++|+.|+|++|.+.+ +|.
T Consensus 708 ~L~~ip~~~~~~------------~~--~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~- 770 (876)
T 4ecn_A 708 LMTSIPENSLKP------------KD--GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT- 770 (876)
T ss_dssp CCSCCCTTSSSC------------TT--SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC-
T ss_pred cCCccChHHhcc------------cc--ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch-
Confidence 555666543210 00 00125668999999998644 66655 4 78999999999999887 665
Q ss_pred ccccCCccceEEECCC------CCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCC
Q 040304 872 GFHKLTSLRKLCINGC------SDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCP 940 (1000)
Q Consensus 872 ~~~~l~~L~~L~l~~~------~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 940 (1000)
.+..+++|+.|++++| .....+|. .+..+++|+.|++++| .++.+|.. +. ++|+.|++++|+
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~---~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPT---GITTCPSLIQLQIGSN-DIRKVDEK-LT--PQLYILDIADNP 838 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCT---TGGGCSSCCEEECCSS-CCCBCCSC-CC--SSSCEEECCSCT
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChH---HHhcCCCCCEEECCCC-CCCccCHh-hc--CCCCEEECCCCC
Confidence 5778999999999874 33344443 2334677777777777 45667633 33 577777777774
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.8e-29 Score=296.56 Aligned_cols=96 Identities=22% Similarity=0.201 Sum_probs=78.1
Q ss_pred CCcceEEEcCCcccccccccccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 292 CKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+...+++++++|.++.+|..+. ++|++|+|++|.+..+|. .|+++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3445899999999999998765 899999999999998874 6999999999999999866666788999999999999
Q ss_pred cCccccccccccccCCcccCcc
Q 040304 371 DGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 371 ~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
++| .+..+|.. .+++|++|
T Consensus 108 s~N-~l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 108 SHN-RLQNISCC--PMASLRHL 126 (562)
T ss_dssp TTS-CCCEECSC--CCTTCSEE
T ss_pred CCC-cCCccCcc--ccccCCEE
Confidence 999 56677765 45555444
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=8e-28 Score=284.09 Aligned_cols=243 Identities=20% Similarity=0.161 Sum_probs=156.8
Q ss_pred CcceEEEcCCccccccc-ccccCCCCccEeecCCCccccc-chhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.|++|+|++|.++.+| .+|..+++|++|+|++|.++.+ |..|+++++|++|++++|. +..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 68999999999999885 6899999999999999999988 4569999999999999998 5578876 8999999999
Q ss_pred cCccccccc--cccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEE
Q 040304 371 DGANRLCEL--PLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKL 448 (1000)
Q Consensus 371 ~~~~~l~~i--p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 448 (1000)
++| .+..+ |..++++++|++|+..... +... .+..+++|
T Consensus 129 s~N-~l~~l~~p~~~~~l~~L~~L~L~~n~------------------------l~~~---------~~~~l~~L----- 169 (562)
T 3a79_B 129 SFN-DFDVLPVCKEFGNLTKLTFLGLSAAK------------------------FRQL---------DLLPVAHL----- 169 (562)
T ss_dssp CSS-CCSBCCCCGGGGGCTTCCEEEEECSB------------------------CCTT---------TTGGGTTS-----
T ss_pred CCC-CccccCchHhhcccCcccEEecCCCc------------------------cccC---------chhhhhhc-----
Confidence 999 45554 4678888888888432211 1000 01111111
Q ss_pred EeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCC--C-CCCcccCCCCCCceeEEEEcCCCCCCCCC--CCCCcC
Q 040304 449 EWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGG--T-RFPSWIGDPSFSNVAVLILKNCRRSTSLP--SLGQLC 523 (1000)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~--~~~~l~ 523 (1000)
+|+.|+++++.. . ..|.++..... ..-.+++++|.+...++ .+..++
T Consensus 170 ---------------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~ 221 (562)
T 3a79_B 170 ---------------------------HLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALG 221 (562)
T ss_dssp ---------------------------CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEE
T ss_pred ---------------------------eeeEEEeecccccccccCcccccccCc-ceEEEEecCccchhhhhhhcccccc
Confidence 235555655544 2 23444432111 22256777887766665 466788
Q ss_pred CCCeEEEeeccc----ceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccC
Q 040304 524 SLKDLTIVRMSA----LKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGR 599 (1000)
Q Consensus 524 ~L~~L~L~~~~~----l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 599 (1000)
+|+.|++++|.. +......+ ...++|+.|++.++........ ... . ....++|++|++++ +.++|.
T Consensus 222 ~L~~L~l~~n~~~~~~l~~~~~~l------~~l~~L~~L~L~~~~l~~~~~~-~~~-~-~~~~~~L~~L~l~~-n~l~~~ 291 (562)
T 3a79_B 222 HLQLSNIKLNDENCQRLMTFLSEL------TRGPTLLNVTLQHIETTWKCSV-KLF-Q-FFWPRPVEYLNIYN-LTITER 291 (562)
T ss_dssp EEEEEEEECCSTTHHHHHHHHHHH------HSCSSCEEEEEEEEEECHHHHH-HHH-H-HHTTSSEEEEEEEE-EEECSC
T ss_pred eEEEecccccccccchHHHHHHHH------hccCcceEEEecCCcCcHHHHH-HHH-H-hhhcccccEEEEec-cEeecc
Confidence 899999887631 11111222 2267788888877654211100 000 0 11235899999998 477777
Q ss_pred CCCCC-----CCccEEEEecc
Q 040304 600 LPNHL-----PSLEKIVITEC 615 (1000)
Q Consensus 600 ~p~~l-----~~L~~L~l~~~ 615 (1000)
+|..+ ++|+.|.+.++
T Consensus 292 ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 292 IDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp CCCCCCCCCSCSCCEEEEEEE
T ss_pred ccchhhhcccccchheehhhc
Confidence 88765 55555555443
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2e-27 Score=270.28 Aligned_cols=404 Identities=21% Similarity=0.180 Sum_probs=177.4
Q ss_pred CCcceEEEcCCcccccccccccCCCCccEeecCCCccc-ccchhhhccCCC-------------cEEeccCCcCcccCCh
Q 040304 292 CKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIK-CLPEAITSLFNL-------------EILILSDCRLLLKLPS 357 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L-------------~~L~L~~~~~~~~lp~ 357 (1000)
.++|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++.+| ++|++++|. +..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 46888899998888888888888999999999888776 788888888876 444444444 233333
Q ss_pred hhhccccccceeecCccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhh
Q 040304 358 SIGNLVNLYHLDIDGANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALL 437 (1000)
Q Consensus 358 ~i~~L~~L~~L~L~~~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 437 (1000)
. .++|++|++++| .+..+|..+
T Consensus 89 ~---~~~L~~L~l~~n-~l~~lp~~~------------------------------------------------------ 110 (454)
T 1jl5_A 89 L---PPHLESLVASCN-SLTELPELP------------------------------------------------------ 110 (454)
T ss_dssp C---CTTCSEEECCSS-CCSSCCCCC------------------------------------------------------
T ss_pred C---cCCCCEEEccCC-cCCcccccc------------------------------------------------------
Confidence 1 234444444444 223333211
Q ss_pred ccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC
Q 040304 438 RVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP 517 (1000)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~ 517 (1000)
++|+.|+++++....+|.. .++|++|++++|.+.+ +|
T Consensus 111 -------------------------------------~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 111 -------------------------------------QSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp -------------------------------------TTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CC
T ss_pred -------------------------------------CCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-Cc
Confidence 2344445555544444432 2578888888887665 66
Q ss_pred CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccc
Q 040304 518 SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLS 597 (1000)
Q Consensus 518 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 597 (1000)
.++.+++|++|++++|... .++. .+++|+.|++++|... +. + .++.+++|++|++++ ++++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~-~lp~---------~~~~L~~L~L~~n~l~------~l-~-~~~~l~~L~~L~l~~-N~l~ 208 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLK-KLPD---------LPPSLEFIAAGNNQLE------EL-P-ELQNLPFLTAIYADN-NSLK 208 (454)
T ss_dssp CCTTCTTCCEEECCSSCCS-CCCC---------CCTTCCEEECCSSCCS------SC-C-CCTTCTTCCEEECCS-SCCS
T ss_pred ccCCCCCCCEEECCCCcCc-ccCC---------CcccccEEECcCCcCC------cC-c-cccCCCCCCEEECCC-CcCC
Confidence 7778888888888877532 2321 1357778888777652 11 1 356777888888877 4555
Q ss_pred cCCCCCCCCccEEEEeccccccccCCCCCcceEEEEcCCCCcccccccCCCCcceEEecCCccccccccccccccceeEE
Q 040304 598 GRLPNHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEI 677 (1000)
Q Consensus 598 ~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l 677 (1000)
.+|...+ +|+.|++++|.......+
T Consensus 209 -~l~~~~~---------------------~L~~L~l~~n~l~~lp~~--------------------------------- 233 (454)
T 1jl5_A 209 -KLPDLPL---------------------SLESIVAGNNILEELPEL--------------------------------- 233 (454)
T ss_dssp -SCCCCCT---------------------TCCEEECCSSCCSSCCCC---------------------------------
T ss_pred -cCCCCcC---------------------cccEEECcCCcCCccccc---------------------------------
Confidence 3454333 333444444321111011
Q ss_pred ecCCCCCccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCC
Q 040304 678 VGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYD 757 (1000)
Q Consensus 678 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 757 (1000)
..+++|++|++++|.... ++. .+++|+.|++++|. +..+|.. +++|+.|++++
T Consensus 234 ------~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~------------- 286 (454)
T 1jl5_A 234 ------QNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSE------------- 286 (454)
T ss_dssp ------TTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCS-------------
T ss_pred ------CCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCc-ccccCcc---cCcCCEEECcC-------------
Confidence 123445555555544322 221 23566666666653 2223321 23444444444
Q ss_pred cccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccc
Q 040304 758 DACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLK 837 (1000)
Q Consensus 758 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~ 837 (1000)
|. +..+|.. .++|+.|++++| .++.++. .+++|+.|++++| .+++ +|. .+++|++|+++
T Consensus 287 -----------N~-l~~l~~~---~~~L~~L~l~~N-~l~~i~~--~~~~L~~L~Ls~N-~l~~-lp~-~~~~L~~L~L~ 345 (454)
T 1jl5_A 287 -----------NI-FSGLSEL---PPNLYYLNASSN-EIRSLCD--LPPSLEELNVSNN-KLIE-LPA-LPPRLERLIAS 345 (454)
T ss_dssp -----------SC-CSEESCC---CTTCCEEECCSS-CCSEECC--CCTTCCEEECCSS-CCSC-CCC-CCTTCCEEECC
T ss_pred -----------Cc-cCcccCc---CCcCCEEECcCC-cCCcccC--CcCcCCEEECCCC-cccc-ccc-cCCcCCEEECC
Confidence 32 2222211 145555555553 3333331 2345566666553 3333 333 35778888888
Q ss_pred cCCCccccCCCCCCCCccEEEeccccCcc--cccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCC
Q 040304 838 KCPGIVFFPEEGLSTNLTYLEISGANIYK--PLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFP 915 (1000)
Q Consensus 838 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 915 (1000)
+|. +..+|. .+++|++|++++|.+.+ .+|. .+. .| +.|.....+|. .+++|+.|++++|
T Consensus 346 ~N~-l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~-~l~------~L--~~n~~~~~i~~------~~~~L~~L~ls~N- 406 (454)
T 1jl5_A 346 FNH-LAEVPE--LPQNLKQLHVEYNPLREFPDIPE-SVE------DL--RMNSHLAEVPE------LPQNLKQLHVETN- 406 (454)
T ss_dssp SSC-CSCCCC--CCTTCCEEECCSSCCSSCCCCCT-TCC------EE--ECCC---------------------------
T ss_pred CCc-cccccc--hhhhccEEECCCCCCCcCCCChH-HHH------hh--hhccccccccc------ccCcCCEEECCCC-
Confidence 775 345555 56788888888888777 4443 122 22 23444455554 3567777777777
Q ss_pred CccccCccccCCCCccccccccCCCCC
Q 040304 916 KLERLSSKGFHYLVSLESLEVFSCPNF 942 (1000)
Q Consensus 916 ~l~~l~~~~~~~l~~L~~L~l~~c~~l 942 (1000)
.++.++ .+. ++++.|.+.+|...
T Consensus 407 ~l~~~~--~iP--~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 407 PLREFP--DIP--ESVEDLRMNSERVV 429 (454)
T ss_dssp ---------------------------
T ss_pred cCCccc--cch--hhHhheeCcCcccC
Confidence 344322 011 45667777776433
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.3e-27 Score=271.82 Aligned_cols=353 Identities=20% Similarity=0.225 Sum_probs=172.8
Q ss_pred eEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCccee
Q 040304 479 RLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTL 558 (1000)
Q Consensus 479 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L 558 (1000)
+|+++++....+|.. .++|++|++++|.+.+ +|. .+++|++|++++|... .++. ..++|++|
T Consensus 75 ~L~l~~~~l~~lp~~-----~~~L~~L~l~~n~l~~-lp~--~~~~L~~L~l~~n~l~-~l~~---------~~~~L~~L 136 (454)
T 1jl5_A 75 ELELNNLGLSSLPEL-----PPHLESLVASCNSLTE-LPE--LPQSLKSLLVDNNNLK-ALSD---------LPPLLEYL 136 (454)
T ss_dssp EEECTTSCCSCCCSC-----CTTCSEEECCSSCCSS-CCC--CCTTCCEEECCSSCCS-CCCS---------CCTTCCEE
T ss_pred EEEecCCccccCCCC-----cCCCCEEEccCCcCCc-ccc--ccCCCcEEECCCCccC-cccC---------CCCCCCEE
Confidence 334444444444442 3566777777766654 442 2366777777666422 2211 12567777
Q ss_pred eccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCccEEEEeccccccccCCCCCcceEEEEcCCCC
Q 040304 559 YFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCKR 638 (1000)
Q Consensus 559 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~ 638 (1000)
++++|... +. + .++.+++|++|++++ ++++ .+|..+++|++|++ ++|..
T Consensus 137 ~L~~n~l~------~l-p-~~~~l~~L~~L~l~~-N~l~-~lp~~~~~L~~L~L---------------------~~n~l 185 (454)
T 1jl5_A 137 GVSNNQLE------KL-P-ELQNSSFLKIIDVDN-NSLK-KLPDLPPSLEFIAA---------------------GNNQL 185 (454)
T ss_dssp ECCSSCCS------SC-C-CCTTCTTCCEEECCS-SCCS-CCCCCCTTCCEEEC---------------------CSSCC
T ss_pred ECcCCCCC------CC-c-ccCCCCCCCEEECCC-CcCc-ccCCCcccccEEEC---------------------cCCcC
Confidence 77777542 11 1 356778888888887 4666 46654444444443 33321
Q ss_pred cccccccCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCCcceeEeccCCCccccccCCCCCccccEEEE
Q 040304 639 LVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEI 718 (1000)
Q Consensus 639 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 718 (1000)
.....+.. +++|+.|++++|...+ ++ ..+++|+.|++
T Consensus 186 ~~l~~~~~---------------------------------------l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l 222 (454)
T 1jl5_A 186 EELPELQN---------------------------------------LPFLTAIYADNNSLKK-LP---DLPLSLESIVA 222 (454)
T ss_dssp SSCCCCTT---------------------------------------CTTCCEEECCSSCCSS-CC---CCCTTCCEEEC
T ss_pred CcCccccC---------------------------------------CCCCCEEECCCCcCCc-CC---CCcCcccEEEC
Confidence 11111222 2333444444433221 11 12246666776
Q ss_pred ecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccc
Q 040304 719 WCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVS 798 (1000)
Q Consensus 719 ~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~ 798 (1000)
++|. +..+|. +..+++|++|++++|. +..+|.. +++|++|++++|. +..+|.. +++|+.|++++| .++.
T Consensus 223 ~~n~-l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N-~l~~ 291 (454)
T 1jl5_A 223 GNNI-LEELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN-IFSG 291 (454)
T ss_dssp CSSC-CSSCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSE
T ss_pred cCCc-CCcccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCc-ccccCcc---cCcCCEEECcCC-ccCc
Confidence 6663 335553 6677778888887753 3444432 2678888888864 4556643 478899999885 4555
Q ss_pred cCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCCCCCCCccEEEeccccCcccccccccccCCc
Q 040304 799 LPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEEGLSTNLTYLEISGANIYKPLVNWGFHKLTS 878 (1000)
Q Consensus 799 l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 878 (1000)
++. .+++|+.|++++|. +++ ++. ..++|++|++++|... .+|. .+++|++|++++|.+.+ +|. .+++
T Consensus 292 l~~--~~~~L~~L~l~~N~-l~~-i~~-~~~~L~~L~Ls~N~l~-~lp~--~~~~L~~L~L~~N~l~~-lp~----~l~~ 358 (454)
T 1jl5_A 292 LSE--LPPNLYYLNASSNE-IRS-LCD-LPPSLEELNVSNNKLI-ELPA--LPPRLERLIASFNHLAE-VPE----LPQN 358 (454)
T ss_dssp ESC--CCTTCCEEECCSSC-CSE-ECC-CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSC-CCC----CCTT
T ss_pred ccC--cCCcCCEEECcCCc-CCc-ccC-CcCcCCEEECCCCccc-cccc--cCCcCCEEECCCCcccc-ccc----hhhh
Confidence 543 34678888887754 332 221 1247888888877643 3443 25778888888887764 554 3677
Q ss_pred cceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCCCCCCcceEe
Q 040304 879 LRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGFPSSLLSLK 958 (1000)
Q Consensus 879 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~ 958 (1000)
|++|++++|+ +..+|. .+..+..|.. +.....+|. .+++|+.|++++| .+..+|. .+++|+.|+
T Consensus 359 L~~L~L~~N~-l~~l~~------ip~~l~~L~~--n~~~~~i~~----~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~ 422 (454)
T 1jl5_A 359 LKQLHVEYNP-LREFPD------IPESVEDLRM--NSHLAEVPE----LPQNLKQLHVETN-PLREFPD--IPESVEDLR 422 (454)
T ss_dssp CCEEECCSSC-CSSCCC------CCTTCCEEEC--CC-------------------------------------------
T ss_pred ccEEECCCCC-CCcCCC------ChHHHHhhhh--ccccccccc----ccCcCCEEECCCC-cCCcccc--chhhHhhee
Confidence 8888888764 444332 2334444432 323333441 3489999999999 4565554 567899999
Q ss_pred ecCCc
Q 040304 959 IIGCP 963 (1000)
Q Consensus 959 l~~c~ 963 (1000)
+.+|.
T Consensus 423 ~~~~~ 427 (454)
T 1jl5_A 423 MNSER 427 (454)
T ss_dssp -----
T ss_pred CcCcc
Confidence 98874
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.5e-26 Score=263.30 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=81.1
Q ss_pred hhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccc
Q 040304 288 LLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYH 367 (1000)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 367 (1000)
.+.++++|++|++++|.++.+| .+..+++|++|+|++|.++.+| ++.+++|++|++++|.+ ..+| ++.+++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l-~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC-SCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCC-ceee--cCCCCcCCE
Confidence 4567889999999999999887 6899999999999999999986 89999999999999984 4455 889999999
Q ss_pred eeecCccccccccccccCCcccCcc
Q 040304 368 LDIDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 368 L~L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
|++++| .+..+| ++.+++|++|
T Consensus 111 L~L~~N-~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 111 LNCDTN-KLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp EECCSS-CCSCCC--CTTCTTCCEE
T ss_pred EECCCC-cCCeec--CCCCCcCCEE
Confidence 999999 566665 6666666666
No 28
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.94 E-value=2e-27 Score=277.05 Aligned_cols=196 Identities=17% Similarity=0.274 Sum_probs=156.7
Q ss_pred CCCcEEEEEcCChHHHhhcC-CCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhh
Q 040304 4 APGSRIIVTTRSRDVASKMG-PVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGL 82 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~ 82 (1000)
.+||+||||||++.|+..++ ...+|+|++|+.+|||+||.++||+... ++++++++++|+++|+|+||||+++|+.
T Consensus 263 ~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~ 339 (549)
T 2a5y_B 263 ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKS 339 (549)
T ss_dssp HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 37999999999999999886 4467999999999999999999986532 3578899999999999999999999999
Q ss_pred hccCCcHHHHHHHhhhccccCCCCCCchHHHHHhhccCchhHHHHhh-----------hhcccCCCCCCChHHHHHHHHH
Q 040304 83 LGSKQRVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFA-----------YCAILPKDYEFQEEELVLLWIA 151 (1000)
Q Consensus 83 L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl-----------~~~~f~~~~~i~~~~l~~~w~~ 151 (1000)
|+.+ .++ |...+....+.. ...++..++++||++||++.|.||+ |||+||+++.|+ +..|+|
T Consensus 340 l~~~-~w~-~~~~l~~~l~~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a 412 (549)
T 2a5y_B 340 CEPK-TFE-KMAQLNNKLESR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSC 412 (549)
T ss_dssp CCSS-SHH-HHHHHHHHHHHH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHH
T ss_pred hccc-hHH-HHHHhHHHhhcc-cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeee
Confidence 9877 333 334444332222 2346889999999999999999999 999999999988 889999
Q ss_pred c--CCCccCcccchHHHHHHHHHHHHHhcccccccCC-CCCeEEEchHHHHHHHHhhcccee
Q 040304 152 E--GLIQQSKDRKQADDLGSEYFHDLLSRSLFQKSSN-SGSKFVMHDLVHDLAQWASGETCF 210 (1000)
Q Consensus 152 ~--g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mhdlv~~~~~~~~~~~~~ 210 (1000)
+ ||+.........++.++ ++++|+++||++.... ...+|+|||++|+||+.++.++++
T Consensus 413 ~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 413 VIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9 99987543455667777 9999999999997643 345799999999999999887654
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.2e-25 Score=258.79 Aligned_cols=106 Identities=10% Similarity=-0.060 Sum_probs=56.1
Q ss_pred CCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceee
Q 040304 687 LDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILI 766 (1000)
Q Consensus 687 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l 766 (1000)
++|+.|++++|......+.....+++|+.|++++|......+..+..+++|++|++++|...+..+..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 34555555555554444444444455666666555544444555555566666666654432222444455556666666
Q ss_pred ccccccccccccccCCCCcceEeecC
Q 040304 767 SSCDNLKSLPIGLNNLSHLHRISIEG 792 (1000)
Q Consensus 767 ~~~~~l~~~~~~~~~l~~L~~L~l~~ 792 (1000)
++|......|..+..+++|++|++++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCcccccChhhccccccccEEECCC
Confidence 66544333345555556666666655
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2e-24 Score=248.46 Aligned_cols=340 Identities=15% Similarity=0.191 Sum_probs=181.4
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
++|+.|+++++.+..+|. +..+++|++|+|++|.+..+|. ++++++|++|++++|. +..+|. ++++++|++|++++
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCS
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCC
Confidence 456666666666666654 5666666777776666666665 6666667777776665 333443 66666677776666
Q ss_pred ccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeec
Q 040304 373 ANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRA 452 (1000)
Q Consensus 373 ~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 452 (1000)
| .+..+|. +.++++|++|+...... ..
T Consensus 122 n-~l~~~~~-~~~l~~L~~L~l~~n~l------------------------~~--------------------------- 148 (466)
T 1o6v_A 122 N-QITDIDP-LKNLTNLNRLELSSNTI------------------------SD--------------------------- 148 (466)
T ss_dssp S-CCCCCGG-GTTCTTCSEEEEEEEEE------------------------CC---------------------------
T ss_pred C-CCCCChH-HcCCCCCCEEECCCCcc------------------------CC---------------------------
Confidence 6 4444443 55555555543221110 00
Q ss_pred CCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeEEEee
Q 040304 453 RRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDLTIVR 532 (1000)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~ 532 (1000)
...+..+++|+.|.+.+ ....++. +. .+++|++|++++|.+.. ++.+..+++|++|++++
T Consensus 149 ---------------~~~~~~l~~L~~L~l~~-~~~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 149 ---------------ISALSGLTSLQQLSFGN-QVTDLKP-LA--NLTTLERLDISSNKVSD-ISVLAKLTNLESLIATN 208 (466)
T ss_dssp ---------------CGGGTTCTTCSEEEEEE-SCCCCGG-GT--TCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCS
T ss_pred ---------------ChhhccCCcccEeecCC-cccCchh-hc--cCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecC
Confidence 00122233444444432 2222322 33 37888888888887543 45677778888888887
Q ss_pred cccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCccEEEE
Q 040304 533 MSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLEKIVI 612 (1000)
Q Consensus 533 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l 612 (1000)
|......+ + ..+++|+.|++++|.... ...+..+++|++|++++| .+++ ++
T Consensus 209 n~l~~~~~--~------~~l~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~l~~n-~l~~-~~----------- 259 (466)
T 1o6v_A 209 NQISDITP--L------GILTNLDELSLNGNQLKD--------IGTLASLTNLTDLDLANN-QISN-LA----------- 259 (466)
T ss_dssp SCCCCCGG--G------GGCTTCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSS-CCCC-CG-----------
T ss_pred Cccccccc--c------cccCCCCEEECCCCCccc--------chhhhcCCCCCEEECCCC-cccc-ch-----------
Confidence 75433222 1 236777777777775421 123456677777777774 3331 11
Q ss_pred eccccccccCCCCCcceEEEEcCCCCcccccccCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCCccee
Q 040304 613 TECRQLVISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESL 692 (1000)
Q Consensus 613 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L 692 (1000)
.+..+++|+.|++++|.......+..+++|+.|+++++
T Consensus 260 --------~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n---------------------------------- 297 (466)
T 1o6v_A 260 --------PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN---------------------------------- 297 (466)
T ss_dssp --------GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS----------------------------------
T ss_pred --------hhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC----------------------------------
Confidence 13345666666666665433333444444444444443
Q ss_pred EeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeecccccc
Q 040304 693 SVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNL 772 (1000)
Q Consensus 693 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l 772 (1000)
......+ ...+++|+.|++++|......+ +..+++|+.|++++|. +..+ ..+..+++|+.|++++|...
T Consensus 298 -----~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 298 -----QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK-VSDV-SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp -----CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred -----cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc-cCCc-hhhccCCCCCEEeCCCCccC
Confidence 2211111 1222344444444443222222 3455566666666643 2333 23445566777777766544
Q ss_pred ccccccccCCCCcceEeecCC
Q 040304 773 KSLPIGLNNLSHLHRISIEGC 793 (1000)
Q Consensus 773 ~~~~~~~~~l~~L~~L~l~~c 793 (1000)
+..| +..+++|+.|++++|
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCE
T ss_pred ccch--hhcCCCCCEEeccCC
Confidence 4333 666777777777764
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.3e-25 Score=252.31 Aligned_cols=170 Identities=19% Similarity=0.169 Sum_probs=116.5
Q ss_pred cccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCccccccccccccCCcc
Q 040304 309 PTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLGMKELKC 388 (1000)
Q Consensus 309 p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~i~~L~~ 388 (1000)
+..++.+++|++|++++|.++.+| .++.+++|++|++++|. +..+| ++.+++|++|++++| .+..+| ++++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCC-CCceee--cCCCCc
Confidence 456788999999999999999997 69999999999999998 44565 889999999999999 455554 555555
Q ss_pred cCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecCCCCCCcchHHHHHHH
Q 040304 389 LRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRARRDGDSVDEVREKNIL 468 (1000)
Q Consensus 389 L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 468 (1000)
|++|
T Consensus 108 L~~L---------------------------------------------------------------------------- 111 (457)
T 3bz5_A 108 LTYL---------------------------------------------------------------------------- 111 (457)
T ss_dssp CCEE----------------------------------------------------------------------------
T ss_pred CCEE----------------------------------------------------------------------------
Confidence 5555
Q ss_pred hhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeEEEeecccceeecccccCCCC
Q 040304 469 DMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDLTIVRMSALKGIGSEINGECC 548 (1000)
Q Consensus 469 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 548 (1000)
+++++....+| +. .+++|++|++++|.+.+. .++.+++|++|++++|..++.++ +
T Consensus 112 ------------~L~~N~l~~l~--~~--~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~--~----- 166 (457)
T 3bz5_A 112 ------------NCDTNKLTKLD--VS--QNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLD--V----- 166 (457)
T ss_dssp ------------ECCSSCCSCCC--CT--TCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCC--C-----
T ss_pred ------------ECCCCcCCeec--CC--CCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccc--c-----
Confidence 22223333332 22 367777777777776552 36677777777777775444431 1
Q ss_pred CCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccc
Q 040304 549 SKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLS 597 (1000)
Q Consensus 549 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 597 (1000)
..+++|+.|++++|.... .. +..+++|++|++++ ++++
T Consensus 167 -~~l~~L~~L~ls~n~l~~------l~---l~~l~~L~~L~l~~-N~l~ 204 (457)
T 3bz5_A 167 -TPQTQLTTLDCSFNKITE------LD---VSQNKLLNRLNCDT-NNIT 204 (457)
T ss_dssp -TTCTTCCEEECCSSCCCC------CC---CTTCTTCCEEECCS-SCCS
T ss_pred -ccCCcCCEEECCCCccce------ec---cccCCCCCEEECcC-CcCC
Confidence 236677777777765421 11 35667777777777 3454
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=7.4e-25 Score=252.15 Aligned_cols=384 Identities=14% Similarity=0.067 Sum_probs=191.2
Q ss_pred eEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcce
Q 040304 479 RLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQT 557 (1000)
Q Consensus 479 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~ 557 (1000)
.++..+.....+|. + .++|++|+|++|.+.+..| .++.+++|++|++++|.....++.... ..+++|++
T Consensus 14 ~~~c~~~~l~~lp~-l----~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~-----~~l~~L~~ 83 (455)
T 3v47_A 14 NAICINRGLHQVPE-L----PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF-----RGLSSLII 83 (455)
T ss_dssp EEECCSSCCSSCCC-C----CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT-----TTCTTCCE
T ss_pred ccCcCCCCcccCCC-C----CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc-----cccccCCE
Confidence 34445555666666 2 3678888888888776555 678888888888888865444433221 23677777
Q ss_pred eeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCccEEEEeccccccccCCCCCcceEEEEcCCC
Q 040304 558 LYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLEKIVITECRQLVISLPSVPALCKLKIDGCK 637 (1000)
Q Consensus 558 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 637 (1000)
|++++|.. ....+..++.+++|++|++++| .+++.+|.. ..+..+++|+.|++++|.
T Consensus 84 L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~----------------~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 84 LKLDYNQF------LQLETGAFNGLANLEVLTLTQC-NLDGAVLSG----------------NFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp EECTTCTT------CEECTTTTTTCTTCCEEECTTS-CCBTHHHHS----------------STTTTCTTCCEEECCSSB
T ss_pred EeCCCCcc------CccChhhccCcccCCEEeCCCC-CCCccccCc----------------ccccCcccCCEEECCCCc
Confidence 77777765 2233444566677777777763 443222210 012334444455554443
Q ss_pred CcccccccCCCCcceEEecCCccccccccccccccceeEEecCCCCCccCCcceeEeccCCCccccccCCCCC--ccccE
Q 040304 638 RLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLLTCLWTGGWLP--VTLKR 715 (1000)
Q Consensus 638 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~ 715 (1000)
..... +.. .+..+++|++|++++|......+...... .+|+.
T Consensus 141 l~~~~----------------------~~~--------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 141 IKKIQ----------------------PAS--------------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCSCC----------------------CCG--------------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred cCccC----------------------ccc--------------ccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 11100 000 01123445555555554433322221111 34555
Q ss_pred EEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccC---CCCcceEeecC
Q 040304 716 LEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNN---LSHLHRISIEG 792 (1000)
Q Consensus 716 L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---l~~L~~L~l~~ 792 (1000)
|++++|......+..+. .........+++|++|++++|.....+|..+.. .++|+.|++++
T Consensus 185 L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp EECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cccccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 55554432211111000 000011223355666666665544444433322 25666666666
Q ss_pred CCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCC-CCCCCccEEEeccccCccccccc
Q 040304 793 CHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNW 871 (1000)
Q Consensus 793 c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~ 871 (1000)
|.......... .+.... ...+.....++|++|++++|.....++.. ..+++|++|++++|.+.+..+.
T Consensus 249 ~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 317 (455)
T 3v47_A 249 SYNMGSSFGHT---NFKDPD-------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN- 317 (455)
T ss_dssp CTTTSCCTTCC---SSCCCC-------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-
T ss_pred ccccccccchh---hhccCc-------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-
Confidence 53322111000 000000 00000012356666666666654444443 5566666666666666653332
Q ss_pred ccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCC--
Q 040304 872 GFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAG-- 949 (1000)
Q Consensus 872 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-- 949 (1000)
.|..+++|++|++++|. ++.++. ..+..+++|+.|++++| .++.+++..+..+++|++|++++| .++.+|...
T Consensus 318 ~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 392 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNF-LGSIDS--RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFD 392 (455)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECG--GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred HhcCcccCCEEECCCCc-cCCcCh--hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhc
Confidence 46666666666666653 333322 12234566666666666 555554456666677777777666 556666432
Q ss_pred CCCCcceEeecCCc
Q 040304 950 FPSSLLSLKIIGCP 963 (1000)
Q Consensus 950 ~~~sL~~L~l~~c~ 963 (1000)
.+++|+.|++++||
T Consensus 393 ~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 393 RLTSLQKIWLHTNP 406 (455)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCcccEEEccCCC
Confidence 25666777776654
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.4e-23 Score=241.30 Aligned_cols=317 Identities=17% Similarity=0.213 Sum_probs=211.2
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+..+++|++|+|++|.++.+|. +..+++|++|++++|.+..+|. ++++++|++|++++|. +..+|. +..+++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEE
Confidence 6778999999999999999987 9999999999999999999987 9999999999999998 555665 9999999999
Q ss_pred eecCccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEE
Q 040304 369 DIDGANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKL 448 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 448 (1000)
++++| .+..+| .++.+++|+.|+.. .. +..
T Consensus 140 ~l~~n-~l~~~~-~~~~l~~L~~L~l~-~~------------------------~~~----------------------- 169 (466)
T 1o6v_A 140 ELSSN-TISDIS-ALSGLTSLQQLSFG-NQ------------------------VTD----------------------- 169 (466)
T ss_dssp EEEEE-EECCCG-GGTTCTTCSEEEEE-ES------------------------CCC-----------------------
T ss_pred ECCCC-ccCCCh-hhccCCcccEeecC-Cc------------------------ccC-----------------------
Confidence 99999 567776 47788888877431 00 000
Q ss_pred EeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeE
Q 040304 449 EWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDL 528 (1000)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L 528 (1000)
...+..+++|+.|+++++....++. +. .+++|++|++++|.+.+..+ ++.+++|++|
T Consensus 170 -------------------~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 226 (466)
T 1o6v_A 170 -------------------LKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP-LGILTNLDEL 226 (466)
T ss_dssp -------------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred -------------------chhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc-ccccCCCCEE
Confidence 0113445667777777776665543 33 38999999999998776544 7889999999
Q ss_pred EEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCcc
Q 040304 529 TIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLE 608 (1000)
Q Consensus 529 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 608 (1000)
++++|... .++ .+ ..+++|+.|++++|... ... .+..+++|++|++++| .++ .+|.
T Consensus 227 ~l~~n~l~-~~~-~l------~~l~~L~~L~l~~n~l~------~~~--~~~~l~~L~~L~l~~n-~l~-~~~~------ 282 (466)
T 1o6v_A 227 SLNGNQLK-DIG-TL------ASLTNLTDLDLANNQIS------NLA--PLSGLTKLTELKLGAN-QIS-NISP------ 282 (466)
T ss_dssp ECCSSCCC-CCG-GG------GGCTTCSEEECCSSCCC------CCG--GGTTCTTCSEEECCSS-CCC-CCGG------
T ss_pred ECCCCCcc-cch-hh------hcCCCCCEEECCCCccc------cch--hhhcCCCCCEEECCCC-ccC-cccc------
Confidence 99998643 332 22 34899999999999762 121 2578999999999994 565 2321
Q ss_pred EEEEeccccccccCCCCCcceEEEEcCCCCcccccccCCCCcceEEecCCccccccccccccccceeEEecCCC-----C
Q 040304 609 KIVITECRQLVISLPSVPALCKLKIDGCKRLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIVGCEG-----S 683 (1000)
Q Consensus 609 ~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~-----~ 683 (1000)
+..+++|+.|++++|.......+..+++|+.|+++++......+...+++|+.|++++|.. +
T Consensus 283 -------------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l 349 (466)
T 1o6v_A 283 -------------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSL 349 (466)
T ss_dssp -------------GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred -------------ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhh
Confidence 2234455555555554443344555566666666654332222233444444444444432 2
Q ss_pred CccCCcceeEeccCCCccccccCCCCCccccEEEEecc
Q 040304 684 STCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCC 721 (1000)
Q Consensus 684 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 721 (1000)
..+++|+.|++++|......+ ...+++|+.|++++|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 234444444444444433222 122334444444444
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=4e-23 Score=238.94 Aligned_cols=83 Identities=31% Similarity=0.416 Sum_probs=56.8
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCcc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
+.++.+++.++.+|..+. .++++|+|++|.++.++ ..|.++++|++|+|++|.+....|..|+++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 456677777777776553 56777777777777764 34777777777777777655555666777777777777777
Q ss_pred ccccccc
Q 040304 375 RLCELPL 381 (1000)
Q Consensus 375 ~l~~ip~ 381 (1000)
.+..+|.
T Consensus 91 ~l~~~~~ 97 (477)
T 2id5_A 91 RLKLIPL 97 (477)
T ss_dssp CCCSCCT
T ss_pred cCCccCc
Confidence 4555543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.2e-22 Score=224.43 Aligned_cols=98 Identities=18% Similarity=0.362 Sum_probs=77.4
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+..+++|++|+++++.+..+|. +..+++|++|++++|.+..+|. +.++++|++|++++|. +..+| .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEE
Confidence 3456788999999999888875 8888999999999999988877 8899999999999987 45555 48889999999
Q ss_pred eecCccccccccccccCCcccCcc
Q 040304 369 DIDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
++++| .+..+|. +..+++|++|
T Consensus 116 ~l~~n-~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 116 YLNED-NISDISP-LANLTKMYSL 137 (347)
T ss_dssp ECTTS-CCCCCGG-GTTCTTCCEE
T ss_pred ECcCC-cccCchh-hccCCceeEE
Confidence 99888 4555554 5555555555
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.4e-22 Score=231.06 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=113.1
Q ss_pred ccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCC-CCCc
Q 040304 731 CQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALP-SSVV 809 (1000)
Q Consensus 731 ~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~L~ 809 (1000)
+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|+.+..++...+. .+|+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 333444444444443222112223444556666666665443333445666677777777776666666554332 3666
Q ss_pred eEeeccccCccCCCC---CCCccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEEC
Q 040304 810 DVSIEECDKLKGPLP---TGKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCIN 885 (1000)
Q Consensus 810 ~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 885 (1000)
.|++++|. ++. ++ ...+++|++|++++|......+.. ..+++|++|+|++|.+.+..+. .|..+++|+.|+++
T Consensus 228 ~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 228 SLSITHCN-LTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVS 304 (477)
T ss_dssp EEEEESSC-CCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECC
T ss_pred EEECcCCc-ccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH-HhcCcccCCEEECC
Confidence 66666653 333 44 247889999999998744433333 6788999999999998874444 68889999999999
Q ss_pred CCCCccccccccccccCCCCcCeEEeccCCC
Q 040304 886 GCSDAASFPEVEKGVILPTSLTWIRISDFPK 916 (1000)
Q Consensus 886 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 916 (1000)
+| .++.++. ..+..+++|+.|++++|+-
T Consensus 305 ~N-~l~~~~~--~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 305 GN-QLTTLEE--SVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SS-CCSCCCG--GGBSCGGGCCEEECCSSCE
T ss_pred CC-cCceeCH--hHcCCCcccCEEEccCCCc
Confidence 86 5666664 2334568899999998853
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4e-22 Score=223.86 Aligned_cols=91 Identities=15% Similarity=0.285 Sum_probs=76.3
Q ss_pred CCCcceEEEcCCccccccccc-ccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 291 KCKKLRVLSLGRYRISEVPTS-IGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 291 ~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
.++++++|++++|.++.+|.. |..+++|++|+|++|.+..+|. .|+.+++|++|++++|.+....|..|+.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 357899999999999999765 6889999999999999998875 69999999999999998666556678999999999
Q ss_pred eecCcccccccccc
Q 040304 369 DIDGANRLCELPLG 382 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~ 382 (1000)
++++| .+..+|..
T Consensus 123 ~L~~n-~l~~l~~~ 135 (390)
T 3o6n_A 123 VLERN-DLSSLPRG 135 (390)
T ss_dssp ECCSS-CCCCCCTT
T ss_pred ECCCC-ccCcCCHH
Confidence 99998 55566544
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=6.1e-22 Score=218.73 Aligned_cols=236 Identities=14% Similarity=0.111 Sum_probs=156.0
Q ss_pred CccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEe
Q 040304 710 PVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRIS 789 (1000)
Q Consensus 710 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 789 (1000)
+++|++|++++|.. ..++. +..+++|+.|++++|..+..++. +..+++|++|++++|.. ..++. +..+++|+.|+
T Consensus 109 l~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 109 LTNLRELYLNEDNI-SDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLS 183 (347)
T ss_dssp CTTCSEEECTTSCC-CCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEE
T ss_pred CCcCCEEECcCCcc-cCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEE
Confidence 34555555555532 22222 45566666666666655554433 45556667777666543 33332 55667777777
Q ss_pred ecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCCCCCCCccEEEeccccCccccc
Q 040304 790 IEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEEGLSTNLTYLEISGANIYKPLV 869 (1000)
Q Consensus 790 l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 869 (1000)
+++| .+..++.....++|+.+++++|. +++..+...+++|++|++++|... .++....+++|++|++++|.+.+ ++
T Consensus 184 l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~ 259 (347)
T 4fmz_A 184 LNYN-QIEDISPLASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISD-IN 259 (347)
T ss_dssp CTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCC-CG
T ss_pred ccCC-cccccccccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCCccCC-Ch
Confidence 7764 34444443344567777776643 333233557888999999888643 34435678899999999998876 43
Q ss_pred ccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCC
Q 040304 870 NWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAG 949 (1000)
Q Consensus 870 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 949 (1000)
.+..+++|+.|++++| .++.++. +..+++|+.|++++| .++..+...+..+++|+.|++++|+ ++.++...
T Consensus 260 --~~~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~ 330 (347)
T 4fmz_A 260 --AVKDLTKLKMLNVGSN-QISDISV----LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLA 330 (347)
T ss_dssp --GGTTCTTCCEEECCSS-CCCCCGG----GGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGG
T ss_pred --hHhcCCCcCEEEccCC-ccCCChh----hcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChh
Confidence 4788899999999987 4555542 346788999999999 6666655778889999999999995 66665545
Q ss_pred CCCCcceEeecCCc
Q 040304 950 FPSSLLSLKIIGCP 963 (1000)
Q Consensus 950 ~~~sL~~L~l~~c~ 963 (1000)
.+++|++|++++|+
T Consensus 331 ~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 331 SLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEESSSCC-
T ss_pred hhhccceeehhhhc
Confidence 57899999999886
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2e-22 Score=226.30 Aligned_cols=285 Identities=16% Similarity=0.174 Sum_probs=200.2
Q ss_pred chhhhhhhcCCCcceEEEcCCccccccc-ccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChh-
Q 040304 282 PMVISDLLPKCKKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSS- 358 (1000)
Q Consensus 282 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~- 358 (1000)
..+++..|..+++|++|++++|.++.++ ..|..+++|++|+|++|.+..+|.. ++++++|++|++++|. +..+|..
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 136 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI 136 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHH
Confidence 4556677889999999999999999885 5899999999999999999988755 8999999999999998 5567765
Q ss_pred hhccccccceeecCccccccc-cccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhh
Q 040304 359 IGNLVNLYHLDIDGANRLCEL-PLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALL 437 (1000)
Q Consensus 359 i~~L~~L~~L~L~~~~~l~~i-p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 437 (1000)
|+.+++|++|++++|. +..+ |..++.+++|++|+.... .+... .+
T Consensus 137 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n------------------------~l~~~---------~~ 182 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN------------------------RLTHV---------DL 182 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS------------------------CCSBC---------CG
T ss_pred hcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC------------------------cCCcc---------cc
Confidence 6899999999999994 5555 455889999998843221 11111 02
Q ss_pred ccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC
Q 040304 438 RVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP 517 (1000)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~ 517 (1000)
..+++|+.|+++.+.. ..+...++|+.|+++++....+|... +++|++|++++|.+.+ .+
T Consensus 183 ~~l~~L~~L~l~~n~l---------------~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~-~~ 242 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLL---------------STLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD-TA 242 (390)
T ss_dssp GGCTTCSEEECCSSCC---------------SEEECCSSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCCCC-CG
T ss_pred ccccccceeecccccc---------------cccCCCCcceEEECCCCeeeeccccc----cccccEEECCCCCCcc-cH
Confidence 3345666776654321 22344567888888888877776543 5789999999998764 46
Q ss_pred CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccc
Q 040304 518 SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLS 597 (1000)
Q Consensus 518 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 597 (1000)
.++.+++|++|++++|......+..+. .+++|+.|++++|.... + +..+..+++|++|++++| .++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~-~------~~~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFV------KMQRLERLYISNNRLVA-L------NLYGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGT------TCSSCCEEECCSSCCCE-E------ECSSSCCTTCCEEECCSS-CCC
T ss_pred HHcCCCCccEEECCCCcCCCcChhHcc------ccccCCEEECCCCcCcc-c------CcccCCCCCCCEEECCCC-cce
Confidence 788889999999998875555454443 37889999998887532 1 222356888999999884 666
Q ss_pred cCCCCC---CCCccEEEEeccccccccCCCCCcceEEEEcCC
Q 040304 598 GRLPNH---LPSLEKIVITECRQLVISLPSVPALCKLKIDGC 636 (1000)
Q Consensus 598 ~~~p~~---l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~ 636 (1000)
.+|.. +++|++|++.+|......+..+++|+.|++++|
T Consensus 309 -~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 309 -HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred -ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCC
Confidence 55532 345555555554432223333444444444444
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.6e-22 Score=236.83 Aligned_cols=288 Identities=16% Similarity=0.153 Sum_probs=202.6
Q ss_pred CchhhhhhhcCCCcceEEEcCCccccccc-ccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChh
Q 040304 281 SPMVISDLLPKCKKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSS 358 (1000)
Q Consensus 281 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~ 358 (1000)
...+++..|..+++|++|+|++|.++.+| ..|+.+++|++|+|++|.+..+|.. |+++++|++|+|++|. +..+|..
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~ 141 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRG 141 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHH
Confidence 34566777889999999999999999885 5899999999999999999988765 7999999999999998 4466655
Q ss_pred -hhccccccceeecCccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhh
Q 040304 359 -IGNLVNLYHLDIDGANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALL 437 (1000)
Q Consensus 359 -i~~L~~L~~L~L~~~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 437 (1000)
|+.+++|++|++++|...+..|..++.+++|++|+.. .+.+..+. +
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~------------------------~N~l~~~~---------~ 188 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS------------------------SNRLTHVD---------L 188 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT------------------------TSCCSBCC---------G
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc------------------------CCCCCCcC---------h
Confidence 6899999999999995444445568899999988432 12222111 2
Q ss_pred ccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC
Q 040304 438 RVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP 517 (1000)
Q Consensus 438 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~ 517 (1000)
..+++|+.|+++++.. ..+..+++|+.|+++++....+|..+ .++|+.|++++|.+.+ ++
T Consensus 189 ~~l~~L~~L~l~~n~l---------------~~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~-~~ 248 (597)
T 3oja_B 189 SLIPSLFHANVSYNLL---------------STLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD-TA 248 (597)
T ss_dssp GGCTTCSEEECCSSCC---------------SEEECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCC-CG
T ss_pred hhhhhhhhhhcccCcc---------------ccccCCchhheeeccCCccccccccc----CCCCCEEECCCCCCCC-Ch
Confidence 3355677777654321 23345667889999888887776554 4689999999998765 46
Q ss_pred CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccc
Q 040304 518 SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLS 597 (1000)
Q Consensus 518 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 597 (1000)
.++.+++|+.|++++|......+..+. .+++|+.|++++|.... .+..+..+++|++|++++ +.++
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~L~Ls~N~l~~-------l~~~~~~l~~L~~L~Ls~-N~l~ 314 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFV------KMQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSH-NHLL 314 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGT------TCSSCCEEECTTSCCCE-------EECSSSCCTTCCEEECCS-SCCC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhc------CccCCCEEECCCCCCCC-------CCcccccCCCCcEEECCC-CCCC
Confidence 788889999999998876655555553 37889999999887532 122335688999999988 4666
Q ss_pred cCCCCC---CCCccEEEEeccccccccCCCCCcceEEEEcCCC
Q 040304 598 GRLPNH---LPSLEKIVITECRQLVISLPSVPALCKLKIDGCK 637 (1000)
Q Consensus 598 ~~~p~~---l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 637 (1000)
.+|.. +++|+.|++.+|......+..+++|+.|++++|+
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred -ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 55543 3455555555544332233334444444444443
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2e-22 Score=217.99 Aligned_cols=212 Identities=19% Similarity=0.274 Sum_probs=114.3
Q ss_pred hhhhcCCCcceEEEcCC-cccc-cccccccCCCCccEeecCCCccc-ccchhhhccCCCcEEeccCCcCcccCChhhhcc
Q 040304 286 SDLLPKCKKLRVLSLGR-YRIS-EVPTSIGCLKHLRYLNFSESWIK-CLPEAITSLFNLEILILSDCRLLLKLPSSIGNL 362 (1000)
Q Consensus 286 ~~~~~~l~~L~~L~L~~-n~l~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 362 (1000)
+..|.++++|++|++++ |.+. .+|..|..+++|++|+|++|.+. .+|..++++++|++|++++|.+.+.+|..++.+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 34455555555555553 5444 34555555555555555555555 455555555555555555555444555555555
Q ss_pred ccccceeecCccccccccccccCCc-ccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhcccc
Q 040304 363 VNLYHLDIDGANRLCELPLGMKELK-CLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKK 441 (1000)
Q Consensus 363 ~~L~~L~L~~~~~l~~ip~~i~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 441 (1000)
++|++|++++|...+.+|..+.+++ +|++|
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L------------------------------------------------- 179 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSM------------------------------------------------- 179 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEE-------------------------------------------------
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEE-------------------------------------------------
Confidence 5555555555533334554444443 33333
Q ss_pred CCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCC-CCCcccCCCCCCceeEEEEcCCCCCCCCC-CC
Q 040304 442 DLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGT-RFPSWIGDPSFSNVAVLILKNCRRSTSLP-SL 519 (1000)
Q Consensus 442 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~ 519 (1000)
+++++... .+|..+.. ++ |++|++++|.+.+..| .+
T Consensus 180 ---------------------------------------~L~~N~l~~~~~~~~~~--l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 180 ---------------------------------------TISRNRLTGKIPPTFAN--LN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp ---------------------------------------ECCSSEEEEECCGGGGG--CC-CSEEECCSSEEEECCGGGC
T ss_pred ---------------------------------------ECcCCeeeccCChHHhC--Cc-ccEEECcCCcccCcCCHHH
Confidence 22222222 24444443 33 7777777777665555 56
Q ss_pred CCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccC
Q 040304 520 GQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGR 599 (1000)
Q Consensus 520 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 599 (1000)
..+++|+.|++++|......+. + ..+++|++|++++|.. .+..+..+..+++|++|++++ +.+++.
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~------~~l~~L~~L~Ls~N~l------~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ 283 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-V------GLSKNLNGLDLRNNRI------YGTLPQGLTQLKFLHSLNVSF-NNLCGE 283 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-C------CCCTTCCEEECCSSCC------EECCCGGGGGCTTCCEEECCS-SEEEEE
T ss_pred hcCCCCCEEECCCCceeeecCc-c------cccCCCCEEECcCCcc------cCcCChHHhcCcCCCEEECcC-Cccccc
Confidence 6777777777777654322222 2 2256667777766665 223344455666666666666 455555
Q ss_pred CCC
Q 040304 600 LPN 602 (1000)
Q Consensus 600 ~p~ 602 (1000)
+|.
T Consensus 284 ip~ 286 (313)
T 1ogq_A 284 IPQ 286 (313)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=4.9e-22 Score=216.18 Aligned_cols=219 Identities=23% Similarity=0.309 Sum_probs=170.1
Q ss_pred CCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeec
Q 040304 292 CKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDID 371 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~ 371 (1000)
...+++|+|++|.++.+|..+..+++|++|+|++|.+..+|..++++++|++|+|++|.+ ..+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECC
Confidence 468899999999999999999999999999999999999999999999999999999984 5899999999999999999
Q ss_pred CccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEee
Q 040304 372 GANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWR 451 (1000)
Q Consensus 372 ~~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 451 (1000)
+|+..+.+|..+....-.
T Consensus 159 ~n~~~~~~p~~~~~~~~~-------------------------------------------------------------- 176 (328)
T 4fcg_A 159 ACPELTELPEPLASTDAS-------------------------------------------------------------- 176 (328)
T ss_dssp EETTCCCCCSCSEEEC-C--------------------------------------------------------------
T ss_pred CCCCccccChhHhhccch--------------------------------------------------------------
Confidence 987888888766541100
Q ss_pred cCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeEEEe
Q 040304 452 ARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDLTIV 531 (1000)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~ 531 (1000)
..+..+++|+.|+++++....+|.++.. +++|++|++++|.+.+..+.++.+++|++|+++
T Consensus 177 -----------------~~~~~l~~L~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 177 -----------------GEHQGLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp -----------------CCEEESTTCCEEEEEEECCCCCCGGGGG--CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred -----------------hhhccCCCCCEEECcCCCcCcchHhhcC--CCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 0012234566666677777777777664 778888888888877655577788888888888
Q ss_pred ecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCC
Q 040304 532 RMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLP 605 (1000)
Q Consensus 532 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~ 605 (1000)
+|...+.++..+. .+++|+.|++++|.... ..+..+..+++|++|++++|+.+ +.+|..+.
T Consensus 238 ~n~~~~~~p~~~~------~l~~L~~L~L~~n~~~~------~~p~~~~~l~~L~~L~L~~n~~~-~~iP~~l~ 298 (328)
T 4fcg_A 238 GCTALRNYPPIFG------GRAPLKRLILKDCSNLL------TLPLDIHRLTQLEKLDLRGCVNL-SRLPSLIA 298 (328)
T ss_dssp TCTTCCBCCCCTT------CCCCCCEEECTTCTTCC------BCCTTGGGCTTCCEEECTTCTTC-CCCCGGGG
T ss_pred CCcchhhhHHHhc------CCCCCCEEECCCCCchh------hcchhhhcCCCCCEEeCCCCCch-hhccHHHh
Confidence 8877776665543 37888888888877633 33445677888888888886544 47776443
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.1e-22 Score=219.06 Aligned_cols=243 Identities=19% Similarity=0.238 Sum_probs=184.0
Q ss_pred cCCCCCCCccccccccccccccccCccccccccccccccCCCCCCCchhhhhhhcCCCcceEEEcCCcccccccccccCC
Q 040304 236 SGDCDGMGVRCDGMNKFKVLDKVENLRTFLPIFVEECFFSPAGYISPMVISDLLPKCKKLRVLSLGRYRISEVPTSIGCL 315 (1000)
Q Consensus 236 ~~~~~~~~v~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l 315 (1000)
...|.|.|+.|..............++.|.+.. +... .+|..+..+++|++|+|++|.++.+|..++.+
T Consensus 58 ~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~----------n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l 126 (328)
T 4fcg_A 58 PQIETRTGRALKATADLLEDATQPGRVALELRS----------VPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQF 126 (328)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES----------SCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGG
T ss_pred ccccccCCcchhhhHHHHhcccccceeEEEccC----------CCch-hcChhhhhCCCCCEEECCCCCccchhHHHhcc
Confidence 456889999887554332233344555553322 1112 23445677999999999999999999999999
Q ss_pred CCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhc---------cccccceeecCccccccccccccCC
Q 040304 316 KHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGN---------LVNLYHLDIDGANRLCELPLGMKEL 386 (1000)
Q Consensus 316 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~---------L~~L~~L~L~~~~~l~~ip~~i~~L 386 (1000)
++|++|+|++|.+..+|..++++++|++|++++|...+.+|..++. +++|++|++++| .+..+|..++++
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l 205 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANL 205 (328)
T ss_dssp TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGC
T ss_pred CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCC
Confidence 9999999999999999999999999999999999889999987765 999999999998 566888777666
Q ss_pred cccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecCCCCCCcchHHHHH
Q 040304 387 KCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRARRDGDSVDEVREKN 466 (1000)
Q Consensus 387 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 466 (1000)
++|++|
T Consensus 206 ~~L~~L-------------------------------------------------------------------------- 211 (328)
T 4fcg_A 206 QNLKSL-------------------------------------------------------------------------- 211 (328)
T ss_dssp TTCCEE--------------------------------------------------------------------------
T ss_pred CCCCEE--------------------------------------------------------------------------
Confidence 655555
Q ss_pred HHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEEeecccceeecccccC
Q 040304 467 ILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTIVRMSALKGIGSEING 545 (1000)
Q Consensus 467 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 545 (1000)
+++++....+|..+.. +++|++|++++|.+.+.+| .++.+++|++|++++|...+.++..+..
T Consensus 212 --------------~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 212 --------------KIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp --------------EEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred --------------EccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 3444444556665553 7788888888888777776 5778888888888888777777665533
Q ss_pred CCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecC
Q 040304 546 ECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHK 592 (1000)
Q Consensus 546 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 592 (1000)
+++|+.|++++|.. .+..|..++.+++|+.+++..
T Consensus 276 ------l~~L~~L~L~~n~~------~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 276 ------LTQLEKLDLRGCVN------LSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ------CTTCCEEECTTCTT------CCCCCGGGGGSCTTCEEECCG
T ss_pred ------CCCCCEEeCCCCCc------hhhccHHHhhccCceEEeCCH
Confidence 78888888888876 345556677888888888875
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2e-21 Score=230.45 Aligned_cols=90 Identities=16% Similarity=0.288 Sum_probs=75.4
Q ss_pred CCcceEEEcCCccccccccc-ccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 292 CKKLRVLSLGRYRISEVPTS-IGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
+..+++|++++|.++.+|.. |..+++|++|+|++|.+..+|. .|+.+++|++|+|++|.+.+..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56889999999999998765 6889999999999999998875 699999999999999986666666689999999999
Q ss_pred ecCcccccccccc
Q 040304 370 IDGANRLCELPLG 382 (1000)
Q Consensus 370 L~~~~~l~~ip~~ 382 (1000)
+++| .+..+|..
T Consensus 130 L~~n-~l~~l~~~ 141 (597)
T 3oja_B 130 LERN-DLSSLPRG 141 (597)
T ss_dssp CCSS-CCCCCCTT
T ss_pred eeCC-CCCCCCHH
Confidence 9998 45566543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=3e-20 Score=203.39 Aligned_cols=87 Identities=23% Similarity=0.317 Sum_probs=75.5
Q ss_pred cceEEEcCCcccccccccccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 294 KLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
++++++++++.++.+|..+. ++|++|+|++|.+..+|. .|+++++|++|++++|.+....|..|+++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 68999999999999998774 789999999999998865 699999999999999986666688899999999999999
Q ss_pred ccccccccccc
Q 040304 373 ANRLCELPLGM 383 (1000)
Q Consensus 373 ~~~l~~ip~~i 383 (1000)
| .+..+|..+
T Consensus 112 n-~l~~l~~~~ 121 (332)
T 2ft3_A 112 N-HLVEIPPNL 121 (332)
T ss_dssp S-CCCSCCSSC
T ss_pred C-cCCccCccc
Confidence 8 566776544
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.4e-19 Score=197.97 Aligned_cols=94 Identities=28% Similarity=0.392 Sum_probs=67.3
Q ss_pred cceEEEcCCcccccccccccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 294 KLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
++++++++++.++.+|..+. ++|++|+|++|.++.+|. .|+++++|++|++++|.+....|..|+.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 56778888887777776654 577888888888877765 477888888888888775555577777888888888877
Q ss_pred ccccccccccccCCcccCcc
Q 040304 373 ANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 373 ~~~l~~ip~~i~~L~~L~~L 392 (1000)
| .+..+|..+. ++|++|
T Consensus 110 n-~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 110 N-QLKELPEKMP--KTLQEL 126 (330)
T ss_dssp S-CCSBCCSSCC--TTCCEE
T ss_pred C-cCCccChhhc--ccccEE
Confidence 7 4666665543 444444
No 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.83 E-value=3e-21 Score=225.90 Aligned_cols=165 Identities=16% Similarity=0.243 Sum_probs=136.6
Q ss_pred CCcEEEEEcCChHHHhhcCCCceEeCC------CCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHH
Q 040304 5 PGSRIIVTTRSRDVASKMGPVKYYGLK------LLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARA 78 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v~~~~~~~~~~~l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~ 78 (1000)
+|||||||||++.++..+.....|+++ +|+.+|||+||+++. +.. ..+++.++ |+|+||||++
T Consensus 264 pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkL 332 (1221)
T 1vt4_I 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSI 332 (1221)
T ss_dssp SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHH
T ss_pred CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHH
Confidence 799999999999999765444467777 999999999999984 321 12334443 9999999999
Q ss_pred HHhhhccCC-cHHHHHHHhhhccccCCCCCCchHHHHHhhccCchhH-HHHhhhhcccCCCCCCChHHHHHHHHHcCCCc
Q 040304 79 LGGLLGSKQ-RVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHL-KRCFAYCAILPKDYEFQEEELVLLWIAEGLIQ 156 (1000)
Q Consensus 79 ~g~~L~~~~-~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~~~ 156 (1000)
+|++|+.+. ..+.|+.. ....+..+|++||+.|+++. |+||++||+||+++.|+.+.++..|+++|
T Consensus 333 aGs~Lr~k~~s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG--- 400 (1221)
T 1vt4_I 333 IAESIRDGLATWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--- 400 (1221)
T ss_dssp HHHHHHHSCSSHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---
T ss_pred HHHHHhCCCCCHHHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---
Confidence 999999885 47889764 12368999999999999998 99999999999999999999999998876
Q ss_pred cCcccchHHHHHHHHHHHHHhcccccccCCCCCeEEEchHHHHHH
Q 040304 157 QSKDRKQADDLGSEYFHDLLSRSLFQKSSNSGSKFVMHDLVHDLA 201 (1000)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~mhdlv~~~~ 201 (1000)
++.++.++++|+++||++.. .+..+|+|||++++++
T Consensus 401 --------eedAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 --------KSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp --------SHHHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred --------HHHHHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHh
Confidence 12478899999999999985 2356899999999865
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.83 E-value=1.3e-20 Score=245.54 Aligned_cols=186 Identities=20% Similarity=0.352 Sum_probs=153.5
Q ss_pred CCCcEEEEEcCChHHHhh-cCCCceEeCCC-CChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHh
Q 040304 4 APGSRIIVTTRSRDVASK-MGPVKYYGLKL-LSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGG 81 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~-~~~~~~~~l~~-L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~ 81 (1000)
++|||||||||++.|+.. ++....+++++ |+++|||+||...++.. .+++++++++|+++|+|+||||+++|+
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~ 329 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGA 329 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHH
Confidence 689999999999999965 45667899996 99999999999998532 234567899999999999999999999
Q ss_pred hhccCCcHHHHHHHhhhccccC----CC---C--CCchHHHHHhhccCchhHHHHhhhhcccCCCCCCChHHHHHHHHHc
Q 040304 82 LLGSKQRVDEWRAILDSKIWDL----ED---E--TEVPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAE 152 (1000)
Q Consensus 82 ~L~~~~~~~~w~~~l~~~~~~~----~~---~--~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~ 152 (1000)
+|+.+. ..|+.+++...... .. . ..+..+|++||+.|+++.|.||+|||+||+++.|+++.++..|.++
T Consensus 330 ~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 330 LLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp HHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred HhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 999875 45777665432111 11 1 1588999999999999999999999999999999999999999543
Q ss_pred CCCccCcccchHHHHHHHHHHHHHhcccccccCCC-CCeEEEchHHHHHHHHhhccc
Q 040304 153 GLIQQSKDRKQADDLGSEYFHDLLSRSLFQKSSNS-GSKFVMHDLVHDLAQWASGET 208 (1000)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~-~~~~~mhdlv~~~~~~~~~~~ 208 (1000)
++.++.++++|++++|++....+ ..+|+|||++|+|++..+.++
T Consensus 408 ------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 46688999999999999976432 335999999999999987765
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=5.4e-21 Score=227.97 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=51.8
Q ss_pred hhhhcCCCcceEEEcCCccc----cccccccc------------CCCCccEeecCCCccccc-chhhhcc--CCCcEEec
Q 040304 286 SDLLPKCKKLRVLSLGRYRI----SEVPTSIG------------CLKHLRYLNFSESWIKCL-PEAITSL--FNLEILIL 346 (1000)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n~l----~~lp~~~~------------~l~~L~~L~Ls~n~i~~l-p~~i~~L--~~L~~L~L 346 (1000)
+..+..+++|+.|+|+++.. ..+|..++ .+++|++|+|++|.+... +..+..+ .+|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 44556677788888877542 12232222 567777777777766532 3335443 34777777
Q ss_pred cCCcCcc--cCChhhhccccccceeecCcc
Q 040304 347 SDCRLLL--KLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 347 ~~~~~~~--~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
++|.... .++..+..+++|++|++++|.
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESS 175 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence 7765211 122223467777777777773
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=3.3e-20 Score=200.58 Aligned_cols=248 Identities=16% Similarity=0.097 Sum_probs=146.4
Q ss_pred CcceeEeccCCCcc--ccccCCCCCccccEEEEec-ccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccce
Q 040304 688 DLESLSVFRCPLLT--CLWTGGWLPVTLKRLEIWC-CYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSI 764 (1000)
Q Consensus 688 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 764 (1000)
+++.|++++|...+ .++......++|++|++++ +.....+|..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555544 4444445556677777764 43334566666666777777777655544566666666677777
Q ss_pred eeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCcc-ccceeccccCCCcc
Q 040304 765 LISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKIS-SLQELSLKKCPGIV 843 (1000)
Q Consensus 765 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~-~L~~L~l~~~~~~~ 843 (1000)
++++|...+.+|..+..+++|++|++++|.....+|.. ...++ +|++|++++|...+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----------------------l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS----------------------YGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG----------------------GGCCCTTCCEEECCSSEEEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH----------------------HhhhhhcCcEEECcCCeeec
Confidence 77776555566666666777777777764322233321 12344 66666666665444
Q ss_pred ccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCcc-ccC
Q 040304 844 FFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLE-RLS 921 (1000)
Q Consensus 844 ~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~ 921 (1000)
.+|.. ..+. |++|++++|.+.+..+. .+..+++|+.|++++|.....++. +..+++|+.|++++| .++ .+|
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~N-~l~~~~p 261 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNN-RIYGTLP 261 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSS-CCEECCC
T ss_pred cCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcCC-cccCcCC
Confidence 44444 3333 77777777766654443 466677777777776543222222 234566777777776 444 344
Q ss_pred ccccCCCCccccccccCCCCCcCCCCCCCCCCcceEeecCCchh
Q 040304 922 SKGFHYLVSLESLEVFSCPNFTSFPEAGFPSSLLSLKIIGCPLL 965 (1000)
Q Consensus 922 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~l 965 (1000)
.++..+++|+.|++++|+..+.+|....+++|+.|++++||.+
T Consensus 262 -~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 262 -QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred -hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 5666777777777777754446666555667777777777643
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.3e-18 Score=190.45 Aligned_cols=266 Identities=16% Similarity=0.083 Sum_probs=137.6
Q ss_pred CCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceee
Q 040304 687 LDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILI 766 (1000)
Q Consensus 687 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l 766 (1000)
++++.|++++|......+..+...++|++|++++|......+..+..+++|++|++++|. +..+|.... ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEEC
Confidence 345555555555443333344455666677766665444446666666777777776643 445554443 56777777
Q ss_pred ccccccccccccccCCCCcceEeecCCCCcc--ccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccc
Q 040304 767 SSCDNLKSLPIGLNNLSHLHRISIEGCHNLV--SLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVF 844 (1000)
Q Consensus 767 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~ 844 (1000)
++|......+..+..+++|+.|++++|..-. ..+......+|+.|++++|. +++ +|..-.++|++|++++|.....
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~-l~~-l~~~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTG-IPKDLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSB-CSS-CCSSSCSSCSCCBCCSSCCCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCC-CCc-cCccccCCCCEEECCCCcCCcc
Confidence 7654332223346667777777777643211 11111111256666666543 333 4444445666666666653333
Q ss_pred cCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCcc
Q 040304 845 FPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSK 923 (1000)
Q Consensus 845 ~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 923 (1000)
.+.. ..+++|++|++++|.+.+ ++...+..+++|+.|++++| .++.+|. .+..+++|+.|++++| .++.++..
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~lp~---~l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNN-KLSRVPA---GLPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSS-CCCBCCT---TGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred CHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCC-cCeecCh---hhhcCccCCEEECCCC-CCCccChh
Confidence 3222 455666666666666655 32224566666666666664 3445554 1234566666666666 55555544
Q ss_pred ccCC------CCccccccccCCCCCc-CCCCC--CCCCCcceEeecCCc
Q 040304 924 GFHY------LVSLESLEVFSCPNFT-SFPEA--GFPSSLLSLKIIGCP 963 (1000)
Q Consensus 924 ~~~~------l~~L~~L~l~~c~~l~-~l~~~--~~~~sL~~L~l~~c~ 963 (1000)
.+.. .++|+.|++++|+... .++.. ..+++|+.+++++|.
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4432 3456666666664321 22221 124556666666553
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.8e-18 Score=189.20 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=41.1
Q ss_pred CCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceE
Q 040304 709 LPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRI 788 (1000)
Q Consensus 709 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 788 (1000)
..++|++|++++|......|..+..+++|++|++++|. +..+|..+. ++|++|++++|......+..+..+++|+.|
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 34455555555554333334555555555555555532 334444333 456666666554333333345556666666
Q ss_pred eecCC
Q 040304 789 SIEGC 793 (1000)
Q Consensus 789 ~l~~c 793 (1000)
++++|
T Consensus 151 ~l~~n 155 (330)
T 1xku_A 151 ELGTN 155 (330)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 66653
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=9.9e-18 Score=196.05 Aligned_cols=79 Identities=25% Similarity=0.337 Sum_probs=68.5
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
..+++|++++|.++.+|..+. ++|++|+|++|.++.+|. .+++|++|+|++|. +..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 358999999999999998776 899999999999999987 68999999999998 667887 779999999999
Q ss_pred ccccccccc
Q 040304 373 ANRLCELPL 381 (1000)
Q Consensus 373 ~~~l~~ip~ 381 (1000)
| .+..+|.
T Consensus 111 N-~l~~l~~ 118 (622)
T 3g06_A 111 N-PLTHLPA 118 (622)
T ss_dssp C-CCCCCCC
T ss_pred C-cCCCCCC
Confidence 8 5666665
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=3.5e-20 Score=220.96 Aligned_cols=396 Identities=12% Similarity=0.025 Sum_probs=205.2
Q ss_pred CCCcCCCCeEEEeecccceee---cccccCCC------CCCCCCCcceeeccCcccccccCCCCCCcccccc-CCc-cce
Q 040304 519 LGQLCSLKDLTIVRMSALKGI---GSEINGEC------CSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQA-FPR-LQK 587 (1000)
Q Consensus 519 ~~~l~~L~~L~L~~~~~l~~~---~~~~~~~~------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~~-L~~ 587 (1000)
+..+++|+.|++++|+..... +..+.+.. ....+++|++|++++|... ......+.. ++. |++
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~------~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS------DLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC------HHHHHHHHHHHGGGCCE
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec------HHHHHHHHHhccccCcE
Confidence 456788999999988654322 11111100 0013667777777776431 111111222 444 777
Q ss_pred EEecCCccccc-CCC---CCCCCccEEEEeccccc-------cccCCCCCcceEEEEcCCCCc--ccc----cccCCCCc
Q 040304 588 LFIHKCPKLSG-RLP---NHLPSLEKIVITECRQL-------VISLPSVPALCKLKIDGCKRL--VCD----GLSESKSL 650 (1000)
Q Consensus 588 L~l~~c~~l~~-~~p---~~l~~L~~L~l~~~~~l-------~~~~~~l~~L~~L~l~~~~~~--~~~----~~~~~~~L 650 (1000)
|++++|..+.. .++ ..+++|++|++.+|... ......+++|+.|+++++... ... .+..+++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 77777653321 111 23456666666665421 111123455555555555422 111 12234445
Q ss_pred ceEEecCCccccccccccccccceeEEecCCCCCccCCcceeEeccCCCc---cccccCCCCCccccEEEEecccCceec
Q 040304 651 NKMTLWNISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCPLL---TCLWTGGWLPVTLKRLEIWCCYNFKVL 727 (1000)
Q Consensus 651 ~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~l 727 (1000)
+.|+++++.. ..++. .+..+++|+.|+++.+... ...+.....+++|+.|.++++ ....+
T Consensus 223 ~~L~L~~~~~-~~l~~---------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l 285 (592)
T 3ogk_B 223 VSVKVGDFEI-LELVG---------------FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEM 285 (592)
T ss_dssp CEEECSSCBG-GGGHH---------------HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTG
T ss_pred cEEeccCccH-HHHHH---------------HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHH
Confidence 5555544321 11110 0223455555555543222 112222344567777777664 33455
Q ss_pred cccccCccccceEeecCCCchhh--hhhhcCCcccccceeeccccccccccccccCCCCcceEeecC----------CCC
Q 040304 728 TSECQLPVAIEALTISNCSNLES--IAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEG----------CHN 795 (1000)
Q Consensus 728 ~~~~~~~~~L~~L~L~~~~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~----------c~~ 795 (1000)
+..+..+++|++|++++|. +.. +...+..+++|++|+++++..-..++.....+++|++|++++ |+.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 6666677778888888776 322 223345667888888874433333444445677788888884 665
Q ss_pred ccccCC---CCCCCCCceEeeccccCccCCCCC--C-Cccccceecccc---CCCccccCCC-------CCCCCccEEEe
Q 040304 796 LVSLPE---DALPSSVVDVSIEECDKLKGPLPT--G-KISSLQELSLKK---CPGIVFFPEE-------GLSTNLTYLEI 859 (1000)
Q Consensus 796 l~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~--~-~l~~L~~L~l~~---~~~~~~~~~~-------~~l~~L~~L~L 859 (1000)
++.... ....++|+.|++ .|+.+++.... . .+++|++|++++ |..++..|.. ..+++|++|++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 553211 112357777777 44555431111 1 367788888863 3344433211 33678888888
Q ss_pred cccc--CcccccccccccCCccceEEECCCCCccc--cccccccccCCCCcCeEEeccCCCcccc-CccccCCCCccccc
Q 040304 860 SGAN--IYKPLVNWGFHKLTSLRKLCINGCSDAAS--FPEVEKGVILPTSLTWIRISDFPKLERL-SSKGFHYLVSLESL 934 (1000)
Q Consensus 860 ~~n~--~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~l~~L~~L 934 (1000)
++|. +.+.........+++|+.|++++|. ++. ++. .+..+++|+.|++++|+ ++.- .......+++|++|
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~---~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME---FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH---HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHH---HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 7544 4443332223447788888888765 322 221 11345778888888885 4431 11233567888888
Q ss_pred cccCCCCCcCC
Q 040304 935 EVFSCPNFTSF 945 (1000)
Q Consensus 935 ~l~~c~~l~~l 945 (1000)
++++|+ ++..
T Consensus 519 ~ls~n~-it~~ 528 (592)
T 3ogk_B 519 WVQGYR-ASMT 528 (592)
T ss_dssp EEESCB-CCTT
T ss_pred ECcCCc-CCHH
Confidence 888885 5443
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=190.04 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=53.8
Q ss_pred cceEEEcCCcccccccccccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 294 KLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
...+.+++++.++.+|..+. ++|++|+|++|.++.+|. .+.++++|++|++++|.+....|..|+++++|++|++++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 33445666666666665443 356666666666666554 366666666666666654444444566666666666666
Q ss_pred cccccccccc-ccCCcccCcc
Q 040304 373 ANRLCELPLG-MKELKCLRTL 392 (1000)
Q Consensus 373 ~~~l~~ip~~-i~~L~~L~~L 392 (1000)
| .+..+|.. ++++++|++|
T Consensus 110 n-~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 110 N-YLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp S-CCSSCCHHHHTTCTTCSEE
T ss_pred C-cCCcCCHhHhCCCccCCEE
Confidence 6 34444443 4444444444
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.1e-18 Score=188.55 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=77.0
Q ss_pred CcceEEEcCCccccccccc-ccCCCCccEeecCCCccccc---chhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 293 KKLRVLSLGRYRISEVPTS-IGCLKHLRYLNFSESWIKCL---PEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+.|++|+|++|.++.+|.. |..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 4788888988888888764 68888899999988888765 5677788889999998887 55677778888889999
Q ss_pred eecCccccccccc--cccCCcccCcc
Q 040304 369 DIDGANRLCELPL--GMKELKCLRTL 392 (1000)
Q Consensus 369 ~L~~~~~l~~ip~--~i~~L~~L~~L 392 (1000)
++++| .+..+|. .+..+++|++|
T Consensus 107 ~l~~n-~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 107 DFQHS-NLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp ECTTS-EEESSTTTTTTTTCTTCCEE
T ss_pred ECCCC-cccccccchhhhhccCCCEE
Confidence 98888 5666553 46666666666
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.3e-17 Score=190.76 Aligned_cols=223 Identities=21% Similarity=0.227 Sum_probs=154.7
Q ss_pred CCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeecccccccccc-ccccCCCCcce
Q 040304 709 LPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLP-IGLNNLSHLHR 787 (1000)
Q Consensus 709 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~ 787 (1000)
++++++.|++++|......+..+..+++|+.|+|++|..-...+..+..+++|++|++++|. ++.++ ..+..+++|++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCE
Confidence 45677888887776555556677777888888887764433334566667788888888765 44443 44677888888
Q ss_pred EeecCCCCccccCCCCC--CCCCceEeeccccCccCCCC---CCCccccceeccccCCCccccCCCCCCCCccEEEeccc
Q 040304 788 ISIEGCHNLVSLPEDAL--PSSVVDVSIEECDKLKGPLP---TGKISSLQELSLKKCPGIVFFPEEGLSTNLTYLEISGA 862 (1000)
Q Consensus 788 L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n 862 (1000)
|++++| .++.++...+ .++|+.|++++|+.+.. ++ +..+++|++|++++|. +..+|....+++|++|+|++|
T Consensus 152 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 152 LWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp EECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTS
T ss_pred EECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc-cChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCC
Confidence 888873 4566665443 35777777777776665 33 2367888888888886 445565577788888888888
Q ss_pred cCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCC
Q 040304 863 NIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCP 940 (1000)
Q Consensus 863 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 940 (1000)
.+.+..+. .|..+++|+.|++++|. +..++. ..+..+++|+.|++++| +++.++...+..+++|+.|++++||
T Consensus 229 ~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 229 HFPEIRPG-SFHGLSSLKKLWVMNSQ-VSLIER--NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSEECGG-GGTTCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccCcc-cccCccCCCEEEeCCCc-CceECH--HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 88774343 67888888888888864 444432 23345678888888888 7777776777788888888888775
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=2e-17 Score=188.37 Aligned_cols=230 Identities=19% Similarity=0.180 Sum_probs=153.8
Q ss_pred ccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeecccccccccc-cc
Q 040304 700 LTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLP-IG 778 (1000)
Q Consensus 700 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~ 778 (1000)
++.+|. .++++++.|++++|......+..+..+++|++|+|++|......+..+..+++|++|++++|. ++.++ ..
T Consensus 55 l~~iP~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 131 (440)
T 3zyj_A 55 LREVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGA 131 (440)
T ss_dssp CSSCCS--CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTT
T ss_pred cCcCCC--CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhH
Confidence 344443 345677777777776555555667777778888877765333334556667778888887764 44444 35
Q ss_pred ccCCCCcceEeecCCCCccccCCCCC--CCCCceEeeccccCccCCCC---CCCccccceeccccCCCccccCCCCCCCC
Q 040304 779 LNNLSHLHRISIEGCHNLVSLPEDAL--PSSVVDVSIEECDKLKGPLP---TGKISSLQELSLKKCPGIVFFPEEGLSTN 853 (1000)
Q Consensus 779 ~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 853 (1000)
+..+++|+.|++++ +.++.++...+ .++|+.|++++|+.+.. ++ +.++++|++|++++|. +..+|....+++
T Consensus 132 ~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~ 208 (440)
T 3zyj_A 132 FVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIK 208 (440)
T ss_dssp SCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSS
T ss_pred hhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCc-CccccccCCCcc
Confidence 77777888888877 44556655433 25777777777666654 22 2367788888888875 455665677778
Q ss_pred ccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCcccc
Q 040304 854 LTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLES 933 (1000)
Q Consensus 854 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~ 933 (1000)
|++|+|++|.+.+..+ ..|..+++|+.|++++|. ++.++. ..+..+++|+.|++++| +++.++...+..+++|+.
T Consensus 209 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQ-IQVIER--NAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCC-CCEECT--TSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCE
T ss_pred cCEEECCCCccCccCh-hhhccCccCCEEECCCCc-eeEECh--hhhcCCCCCCEEECCCC-CCCccChhHhccccCCCE
Confidence 8888888887776333 367788888888888763 444443 23445677888888887 777777677777888888
Q ss_pred ccccCCC
Q 040304 934 LEVFSCP 940 (1000)
Q Consensus 934 L~l~~c~ 940 (1000)
|++++||
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 8888775
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=187.30 Aligned_cols=265 Identities=16% Similarity=0.093 Sum_probs=184.2
Q ss_pred cceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeecc
Q 040304 689 LESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISS 768 (1000)
Q Consensus 689 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~ 768 (1000)
....+.+++ .++.+|. ..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 33 ~~~c~~~~~-~l~~iP~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSG-SLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCST-TCSSCCT--TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCC-Ccccccc--cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 333444433 2344443 2446788888888764444444677888888888888643333355677778888888888
Q ss_pred cccccccccc-ccCCCCcceEeecCCCCccccCC-CC--CCCCCceEeeccccCccCCCC--CCCccccceeccccCCCc
Q 040304 769 CDNLKSLPIG-LNNLSHLHRISIEGCHNLVSLPE-DA--LPSSVVDVSIEECDKLKGPLP--TGKISSLQELSLKKCPGI 842 (1000)
Q Consensus 769 ~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~-~~--~~~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~~ 842 (1000)
|. ++.++.. +..+++|++|++++| .++.++. .. ..++|+.|++++|+.++...+ ...+++|++|++++|...
T Consensus 110 n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 110 NY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred Cc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 64 4455543 778888888888884 5566665 22 346888888888766655222 347899999999999866
Q ss_pred cccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCcccccccc-ccccCCCCcCeEEeccCCCccc-
Q 040304 843 VFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVE-KGVILPTSLTWIRISDFPKLER- 919 (1000)
Q Consensus 843 ~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~- 919 (1000)
...+.. ..+++|++|++++|.+.. ++...+..+++|+.|++++|. ++.++... ......+.++.++++++ .+..
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~ 264 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNV-KITDE 264 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESC-BCCHH
T ss_pred ccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccc-cccCc
Confidence 655655 778999999999999855 555456678999999999974 44443211 11224567888888888 4433
Q ss_pred ----cCccccCCCCccccccccCCCCCcCCCCCC--CCCCcceEeecCCc
Q 040304 920 ----LSSKGFHYLVSLESLEVFSCPNFTSFPEAG--FPSSLLSLKIIGCP 963 (1000)
Q Consensus 920 ----l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~l~~c~ 963 (1000)
+| .++..+++|+.|++++| .++.+|... .+++|++|++++||
T Consensus 265 ~l~~l~-~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 265 SLFQVM-KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHH-HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhhH-HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 44 46778999999999999 788999753 47899999999986
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=4.5e-18 Score=183.86 Aligned_cols=225 Identities=18% Similarity=0.121 Sum_probs=146.9
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCc--ccCChhhhccccccceeecC
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLL--LKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~--~~lp~~i~~L~~L~~L~L~~ 372 (1000)
+.++++++.++.+|..+. ++|++|+|++|.++.+|.. ++++++|++|++++|.+. +..|..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 578999999999998665 7999999999999999976 799999999999999844 23367788899999999999
Q ss_pred ccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeec
Q 040304 373 ANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRA 452 (1000)
Q Consensus 373 ~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 452 (1000)
| .+..+|..+..+++|++|+.. .+.+.....
T Consensus 88 n-~i~~l~~~~~~l~~L~~L~l~------------------------~n~l~~~~~------------------------ 118 (306)
T 2z66_A 88 N-GVITMSSNFLGLEQLEHLDFQ------------------------HSNLKQMSE------------------------ 118 (306)
T ss_dssp C-SEEEEEEEEETCTTCCEEECT------------------------TSEEESSTT------------------------
T ss_pred C-ccccChhhcCCCCCCCEEECC------------------------CCccccccc------------------------
Confidence 9 677888888888888888321 111100000
Q ss_pred CCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCC-cccCCCCCCceeEEEEcCCCCCC-CCC-CCCCcCCCCeEE
Q 040304 453 RRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFP-SWIGDPSFSNVAVLILKNCRRST-SLP-SLGQLCSLKDLT 529 (1000)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~~~~L~~L~L~~~~~~~-~l~-~~~~l~~L~~L~ 529 (1000)
...+..+++|+.|+++++.....+ ..+. .+++|++|++++|.+.+ .+| .+..+++|++|+
T Consensus 119 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 119 ---------------FSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp ---------------TTTTTTCTTCCEEECTTSCCEECSTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred ---------------chhhhhccCCCEEECCCCcCCccchhhcc--cCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 011233445555555555444332 2232 36677777777776554 233 566677777777
Q ss_pred EeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCC
Q 040304 530 IVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLP 601 (1000)
Q Consensus 530 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p 601 (1000)
+++|......+..+ ..+++|+.|++++|.. ....+..+..+++|++|++++ +.+++..|
T Consensus 182 Ls~n~l~~~~~~~~------~~l~~L~~L~L~~N~l------~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~ 240 (306)
T 2z66_A 182 LSQCQLEQLSPTAF------NSLSSLQVLNMSHNNF------FSLDTFPYKCLNSLQVLDYSL-NHIMTSKK 240 (306)
T ss_dssp CTTSCCCEECTTTT------TTCTTCCEEECTTSCC------SBCCSGGGTTCTTCCEEECTT-SCCCBCSS
T ss_pred CCCCCcCCcCHHHh------cCCCCCCEEECCCCcc------CccChhhccCcccCCEeECCC-CCCcccCH
Confidence 77665433323333 2256777777777664 222333445667777777776 35554444
No 61
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=202.47 Aligned_cols=183 Identities=20% Similarity=0.349 Sum_probs=145.5
Q ss_pred CCCcEEEEEcCChHHHhhcCCCceEeC---CCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHH
Q 040304 4 APGSRIIVTTRSRDVASKMGPVKYYGL---KLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALG 80 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~~~~~~~~~l---~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g 80 (1000)
++||+||||||+..++..++ ...+++ ++|+.+||++||...++.. .....+.+++|+++|+|+||||+++|
T Consensus 255 ~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a 328 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIG 328 (591)
T ss_dssp CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHH
Confidence 57999999999999987654 234444 6899999999999998642 12334678999999999999999999
Q ss_pred hhhccCCcHHHHHHHhhhccccC----C-----CCCCchHHHHHhhccCchhHHHHhhhhcccCCCCCCChHHHHHHHHH
Q 040304 81 GLLGSKQRVDEWRAILDSKIWDL----E-----DETEVPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIA 151 (1000)
Q Consensus 81 ~~L~~~~~~~~w~~~l~~~~~~~----~-----~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~ 151 (1000)
++|+.+. ..|+.+++...... . ....+..++..||+.|+++.|.||+++|+||+|+.|+.+.+...|.+
T Consensus 329 ~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~ 406 (591)
T 1z6t_A 329 ALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM 406 (591)
T ss_dssp HHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTC
T ss_pred HHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhcc
Confidence 9998874 36877665422111 1 11268899999999999999999999999999999999999999843
Q ss_pred cCCCccCcccchHHHHHHHHHHHHHhcccccccCC-CCCeEEEchHHHHHHHHhhc
Q 040304 152 EGLIQQSKDRKQADDLGSEYFHDLLSRSLFQKSSN-SGSKFVMHDLVHDLAQWASG 206 (1000)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mhdlv~~~~~~~~~ 206 (1000)
. .+.+..++++|++++|++.... ...+|+||+++|++++....
T Consensus 407 ~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 407 E------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp C------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred C------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 2 2447889999999999986532 23479999999999998743
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=7.3e-18 Score=192.83 Aligned_cols=100 Identities=22% Similarity=0.269 Sum_probs=82.5
Q ss_pred CcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.+++|+|++|.++.+ |..|.++++|++|+|++|.+..++ ..|.++++|++|+|++|.+....+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5789999999999987 678999999999999999999887 45999999999999999854444455888999999999
Q ss_pred cCccccccccc-cccCCcccCccC
Q 040304 371 DGANRLCELPL-GMKELKCLRTLT 393 (1000)
Q Consensus 371 ~~~~~l~~ip~-~i~~L~~L~~L~ 393 (1000)
++| .+..+|. .+.++++|+.|+
T Consensus 155 ~~N-~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 155 RNN-PIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CSC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCC-CcceeCHhHHhcCCcccEEe
Confidence 999 5666665 477777777773
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=6.3e-20 Score=218.92 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCceeEEEEcCCCCCCCCC----C------------CCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccC
Q 040304 499 FSNVAVLILKNCRRSTSLP----S------------LGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFED 562 (1000)
Q Consensus 499 ~~~L~~L~L~~~~~~~~l~----~------------~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 562 (1000)
+++|++|++++|.....+. . ...+++|++|++++|.........+. ..+++|++|++++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~-----~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA-----KSFKNFKVLVLSS 139 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-----HHCTTCCEEEEES
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH-----HhCCCCcEEeCCC
Confidence 6778888888776432211 1 12456677777776643222222221 1256677777766
Q ss_pred cccccccCCCCCCccccccCCccceEEecCCc
Q 040304 563 LQVWEKWEPNTENDEHVQAFPRLQKLFIHKCP 594 (1000)
Q Consensus 563 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 594 (1000)
|..+.... .+.....+++|++|++++|.
T Consensus 140 ~~~~~~~~----l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 140 CEGFSTDG----LAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp CEEEEHHH----HHHHHHHCTTCCEEECTTCE
T ss_pred cCCCCHHH----HHHHHHhCCCCCEEeCcCCc
Confidence 64322110 01111356667777776653
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=189.19 Aligned_cols=100 Identities=27% Similarity=0.344 Sum_probs=82.1
Q ss_pred CcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.+++|+|++|.++.+ +..|.++++|++|+|++|.+..++ ..|.++++|++|+|++|.+....+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 5789999999999988 478999999999999999999887 45999999999999999844433446899999999999
Q ss_pred cCccccccccc-cccCCcccCccC
Q 040304 371 DGANRLCELPL-GMKELKCLRTLT 393 (1000)
Q Consensus 371 ~~~~~l~~ip~-~i~~L~~L~~L~ 393 (1000)
++| .+..+|. .+.++++|++|+
T Consensus 144 ~~N-~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 144 RNN-PIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCC-cccccCHHHhhhCcccCEeC
Confidence 999 5666665 477777777773
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=5.6e-17 Score=189.71 Aligned_cols=59 Identities=29% Similarity=0.486 Sum_probs=50.9
Q ss_pred CCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCccccccccc
Q 040304 316 KHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPL 381 (1000)
Q Consensus 316 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ip~ 381 (1000)
.++++|++++|.++.+|..+. ++|++|++++|. +..+|. .+++|++|++++| .+..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-QLTSLPV 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCSCCCC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCC-cCCcCCC
Confidence 469999999999999998776 899999999998 667887 5789999999999 5667765
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=6.2e-20 Score=211.42 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=67.7
Q ss_pred CcceEEEcCCccccccc--ccccCCCCccEeecCCCccc-----ccchhhhccCCCcEEeccCCcCcccCChhhh-ccc-
Q 040304 293 KKLRVLSLGRYRISEVP--TSIGCLKHLRYLNFSESWIK-----CLPEAITSLFNLEILILSDCRLLLKLPSSIG-NLV- 363 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~-~L~- 363 (1000)
+.|++|+|++|.++..+ ..+..+++|++|+|++|.+. .+|..+..+++|++|++++|.+....+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788888888877543 33677788888888888877 4566777888888888888874443333333 355
Q ss_pred ---cccceeecCccccc-----cccccccCCcccCcc
Q 040304 364 ---NLYHLDIDGANRLC-----ELPLGMKELKCLRTL 392 (1000)
Q Consensus 364 ---~L~~L~L~~~~~l~-----~ip~~i~~L~~L~~L 392 (1000)
+|++|++++|. +. .+|..+.++++|++|
T Consensus 83 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L 118 (461)
T 1z7x_W 83 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQEL 118 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEE
T ss_pred CCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEE
Confidence 68888888884 33 345556666666666
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=3.5e-18 Score=185.25 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=43.1
Q ss_pred cceEEEcCCccccccc-ccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChhhhccccccceeec
Q 040304 294 KLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDID 371 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~ 371 (1000)
.++.++++.+.+...+ ..+..+++|++|+|++|.++.++ ..|+++++|++|++++|.+.+.. + +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h-hhhcCCCCEEECc
Confidence 3455555555555442 22344556666666666666554 34666666666666666533322 2 5566666666666
Q ss_pred Cc
Q 040304 372 GA 373 (1000)
Q Consensus 372 ~~ 373 (1000)
+|
T Consensus 89 ~n 90 (317)
T 3o53_A 89 NN 90 (317)
T ss_dssp SS
T ss_pred CC
Confidence 66
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=7.6e-17 Score=172.10 Aligned_cols=81 Identities=30% Similarity=0.320 Sum_probs=49.4
Q ss_pred CcceEEEcCCccccccc-ccccCCCCccEeecCCCccccc-chhhhccCCCcEEeccCCcCcccC-Chhhhcccccccee
Q 040304 293 KKLRVLSLGRYRISEVP-TSIGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLLKL-PSSIGNLVNLYHLD 369 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~ 369 (1000)
+.|++|++++|.++.+| ..|..+++|++|+|++|.++.+ |..++++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45666666666666654 3466666666666666666655 344666666666666666533333 45566666666666
Q ss_pred ecCc
Q 040304 370 IDGA 373 (1000)
Q Consensus 370 L~~~ 373 (1000)
+++|
T Consensus 112 l~~n 115 (285)
T 1ozn_A 112 LDRC 115 (285)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 6666
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=6.2e-17 Score=167.72 Aligned_cols=131 Identities=17% Similarity=0.104 Sum_probs=91.2
Q ss_pred CccccceeccccCCCccccCCCCCCCCcc---EEEeccc-cCcccccccccccCCccc-eEEECCCCCcccccccccccc
Q 040304 827 KISSLQELSLKKCPGIVFFPEEGLSTNLT---YLEISGA-NIYKPLVNWGFHKLTSLR-KLCINGCSDAASFPEVEKGVI 901 (1000)
Q Consensus 827 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~L~~n-~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~ 901 (1000)
.+++|++|++++|.. ..+|....+++|+ +|++++| .+.+ ++...|..+++|+ +|++++| .++.+|. ..+
T Consensus 103 ~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n-~l~~i~~--~~~- 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNN-GFTSVQG--YAF- 176 (239)
T ss_dssp CCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSC-CCCEECT--TTT-
T ss_pred CCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCC-CCcccCH--hhc-
Confidence 456666666666652 3344444455555 7788877 5544 5554677788888 8888875 4556665 122
Q ss_pred CCCCcCeEEeccCCCccccCccccCCC-CccccccccCCCCCcCCCCCCCCCCcceEeecCCchh
Q 040304 902 LPTSLTWIRISDFPKLERLSSKGFHYL-VSLESLEVFSCPNFTSFPEAGFPSSLLSLKIIGCPLL 965 (1000)
Q Consensus 902 ~~~~L~~L~l~~~~~l~~l~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~~l 965 (1000)
..++|+.|++++|+.++.++...+..+ ++|+.|++++| .++.+|.. .+++|+.|++++++.|
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 226788888888866888877788888 99999999998 67888874 6789999999988754
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=1.5e-17 Score=180.30 Aligned_cols=212 Identities=16% Similarity=0.134 Sum_probs=95.9
Q ss_pred CCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceE
Q 040304 709 LPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRI 788 (1000)
Q Consensus 709 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 788 (1000)
.+++|+.|++++|......+..+..+++|++|++++|......+ +..+++|++|++++|. ++.++ ..++|+.|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEE----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-ccccc----CCCCcCEE
Confidence 34456666666664433334455556666666666544322222 4445566666666543 33332 22556666
Q ss_pred eecCCCCccccCCCCCCCCCceEeeccccCccCCC--CCCCccccceeccccCCCccccCCC--CCCCCccEEEeccccC
Q 040304 789 SIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPL--PTGKISSLQELSLKKCPGIVFFPEE--GLSTNLTYLEISGANI 864 (1000)
Q Consensus 789 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~--~~l~~L~~L~L~~n~~ 864 (1000)
++++| .++.++... .++|+.|++++|. +++.. ....+++|++|++++|......+.. ..+++|++|++++|.+
T Consensus 105 ~l~~n-~l~~~~~~~-~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANN-NISRVSCSR-GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSS-CCSEEEECC-CSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCC-ccCCcCccc-cCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 66653 333333222 2345555555432 22211 1124455555555555433222221 2344555555555554
Q ss_pred cccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCC
Q 040304 865 YKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSC 939 (1000)
Q Consensus 865 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 939 (1000)
.+ ++. ...+++|++|++++| .++.+|.. +..+++|+.|++++| .++.+| ..+..+++|+.|++++|
T Consensus 182 ~~-~~~--~~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~L~~N-~l~~l~-~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 182 YD-VKG--QVVFAKLKTLDLSSN-KLAFMGPE---FQSAAGVTWISLRNN-KLVLIE-KALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CE-EEC--CCCCTTCCEEECCSS-CCCEECGG---GGGGTTCSEEECTTS-CCCEEC-TTCCCCTTCCEEECTTC
T ss_pred cc-ccc--ccccccCCEEECCCC-cCCcchhh---hcccCcccEEECcCC-cccchh-hHhhcCCCCCEEEccCC
Confidence 44 221 223455555555553 23333331 223445555555555 444444 23444555555555555
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=2.6e-19 Score=206.26 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=47.6
Q ss_pred CCCccEeecCCCcccccch--hhhccCCCcEEeccCCcCcc----cCChhhhccccccceeecCcc
Q 040304 315 LKHLRYLNFSESWIKCLPE--AITSLFNLEILILSDCRLLL----KLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 315 l~~L~~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
+++|++|+|++|.+...+. .+..+++|++|++++|.+.. .+|..+..+++|++|++++|.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 67 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc
Confidence 3578999999999876552 37889999999999998442 456667888999999999883
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.5e-16 Score=166.34 Aligned_cols=81 Identities=28% Similarity=0.415 Sum_probs=51.1
Q ss_pred CcceEEEcCCcccccccc-cccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEVPT-SIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.|++|+|++|.++.+|. .|..+++|++|+|++|.++.+|.. |.++++|++|++++|.+....+..|..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 356667777777666643 566667777777777766666655 466667777777766633333334566666777766
Q ss_pred cCc
Q 040304 371 DGA 373 (1000)
Q Consensus 371 ~~~ 373 (1000)
++|
T Consensus 117 ~~n 119 (270)
T 2o6q_A 117 DRN 119 (270)
T ss_dssp CSS
T ss_pred CCC
Confidence 666
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=3.1e-16 Score=167.32 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccc-cccccCCCCcce
Q 040304 709 LPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSL-PIGLNNLSHLHR 787 (1000)
Q Consensus 709 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~ 787 (1000)
.+++|+.|++++|......+..+..+++|++|+++++......+..+..+++|++|++++|..++.+ +..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 4567777777776544444455666667777777665433222455555666666666666544444 445666666666
Q ss_pred EeecCC
Q 040304 788 ISIEGC 793 (1000)
Q Consensus 788 L~l~~c 793 (1000)
|++++|
T Consensus 110 L~l~~n 115 (285)
T 1ozn_A 110 LHLDRC 115 (285)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 666663
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=7.3e-19 Score=209.66 Aligned_cols=424 Identities=17% Similarity=0.137 Sum_probs=201.7
Q ss_pred cCCCCCcceEEEeeeCCCC----CCc-c-------cC--CCCCCceeEEEEcCCCCCCCCC-CCC-CcCCCCeEEEeecc
Q 040304 471 LKPHGNIKRLVINSYGGTR----FPS-W-------IG--DPSFSNVAVLILKNCRRSTSLP-SLG-QLCSLKDLTIVRMS 534 (1000)
Q Consensus 471 l~~~~~L~~L~l~~~~~~~----~p~-~-------~~--~~~~~~L~~L~L~~~~~~~~l~-~~~-~l~~L~~L~L~~~~ 534 (1000)
+..+++|+.|.+.++.... .|. | +. ...+++|++|++++|.+.+..+ .+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3446789999999864211 111 1 10 0136799999999997654322 333 58999999999986
Q ss_pred cceeec-ccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCc-cccc----CCCCCCCCcc
Q 040304 535 ALKGIG-SEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCP-KLSG----RLPNHLPSLE 608 (1000)
Q Consensus 535 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~----~~p~~l~~L~ 608 (1000)
.+.... ..+. ..+++|++|++++|..... ... ........+++|++|++++|. .+.. .+...+++|+
T Consensus 142 ~~~~~~l~~~~-----~~~~~L~~L~L~~~~i~~~-~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 142 GFSTDGLAAIA-----ATCRNLKELDLRESDVDDV-SGH-WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EEEHHHHHHHH-----HHCTTCCEEECTTCEEECC-CGG-GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHH-----HhCCCCCEEeCcCCccCCc-chH-HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 544321 1111 1379999999999874211 100 011112467799999999874 1110 0112246677
Q ss_pred EEEEeccccccc---cCCCCCcceEEEEcCCCC-cc-------cccccCCCCcceE-EecCCccccccccccccccceeE
Q 040304 609 KIVITECRQLVI---SLPSVPALCKLKIDGCKR-LV-------CDGLSESKSLNKM-TLWNISEFENWSSQKFQNVEHLE 676 (1000)
Q Consensus 609 ~L~l~~~~~l~~---~~~~l~~L~~L~l~~~~~-~~-------~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~L~~L~ 676 (1000)
+|++.+|..+.. .+..+++|+.|++..+.. +. ...+..+++|+.| .+.+... ..++.
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~---------- 283 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPA---------- 283 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGG----------
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHH----------
Confidence 777766643221 122355566666554432 00 0012233333333 1111000 00000
Q ss_pred EecCCCCCccCCcceeEeccCCCccc-cccCCCCCccccEEEEecccCceeccccccCccccceEeecC--------CCc
Q 040304 677 IVGCEGSSTCLDLESLSVFRCPLLTC-LWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISN--------CSN 747 (1000)
Q Consensus 677 l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~--------~~~ 747 (1000)
....+++|++|++++|..... +.......++|+.|++++|.....++.....+++|++|++.+ |..
T Consensus 284 -----~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 284 -----VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp -----GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred -----HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 001345555555555552111 111012235566666665522112222233455566666632 222
Q ss_pred hhhhh--hhcCCcccccceeecccccccc-ccccc-cCCCCcceEeec-----CCCCccccCCCCCCCCCceEeeccccC
Q 040304 748 LESIA--ERFYDDACLRSILISSCDNLKS-LPIGL-NNLSHLHRISIE-----GCHNLVSLPEDALPSSVVDVSIEECDK 818 (1000)
Q Consensus 748 l~~l~--~~~~~l~~L~~L~l~~~~~l~~-~~~~~-~~l~~L~~L~l~-----~c~~l~~l~~~~~~~~L~~L~l~~~~~ 818 (1000)
+.... .....+++|++|.++.+ .++. ....+ ..+++|+.|+++ +|+.++..|...
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~--------------- 422 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI--------------- 422 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH---------------
T ss_pred CCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh---------------
Confidence 22211 11112345555544332 2222 11112 235555666655 333333222100
Q ss_pred ccCCCC--CCCccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCcccccc
Q 040304 819 LKGPLP--TGKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPE 895 (1000)
Q Consensus 819 l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 895 (1000)
+ ++ ...+++|++|+++++-....++.. ..+++|++|+|++|.+.+.........+++|++|++++|+. +....
T Consensus 423 --~-~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~ 498 (594)
T 2p1m_B 423 --G-FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL 498 (594)
T ss_dssp --H-HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHH
T ss_pred --H-HHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHH
Confidence 0 00 125677888888652111111111 23677888888888876533332235678888888888764 22111
Q ss_pred ccccccCCCCcCeEEeccCCCccccCcccc-CCCCccccccccCC
Q 040304 896 VEKGVILPTSLTWIRISDFPKLERLSSKGF-HYLVSLESLEVFSC 939 (1000)
Q Consensus 896 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~l~~L~~L~l~~c 939 (1000)
......+++|+.|++++|+. +.-....+ ..+|.|+...+..+
T Consensus 499 -~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 499 -LANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp -HHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECSS
T ss_pred -HHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecCC
Confidence 11122457888888888854 22111112 34566655555444
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=8.8e-17 Score=169.95 Aligned_cols=207 Identities=23% Similarity=0.229 Sum_probs=132.5
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+..++.|+.|++++|.++.++. +..+++|++|+|++|.+..++ .++++++|++|++++|.+.+..|..++.+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3456778888888888877654 778888888888888888765 68888888888888887554444557888888888
Q ss_pred eecCcccccccccc-ccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeE
Q 040304 369 DIDGANRLCELPLG-MKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLK 447 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 447 (1000)
++++| .+..+|.. ++.+++|++|
T Consensus 115 ~L~~n-~l~~~~~~~~~~l~~L~~L------------------------------------------------------- 138 (272)
T 3rfs_A 115 VLVEN-QLQSLPDGVFDKLTNLTYL------------------------------------------------------- 138 (272)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEE-------------------------------------------------------
T ss_pred ECCCC-cCCccCHHHhccCCCCCEE-------------------------------------------------------
Confidence 88888 45555443 4555555554
Q ss_pred EEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCC
Q 040304 448 LEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLK 526 (1000)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~ 526 (1000)
+++++....+|..... .+++|++|++++|.+.+..+ .++.+++|+
T Consensus 139 ---------------------------------~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 139 ---------------------------------NLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp ---------------------------------ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ---------------------------------ECCCCccCccCHHHhc-cCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 2223333333332211 25666777777776654443 356667777
Q ss_pred eEEEeecccceeecccccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCC
Q 040304 527 DLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPS 606 (1000)
Q Consensus 527 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~ 606 (1000)
+|++++|......+..+ ..+++|+.|++++|+.. +.+|+|+.|++.. +.++|.+|.++.+
T Consensus 185 ~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~-------------~~~~~l~~l~~~~-n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVF------DRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWI-NKHSGVVRNSAGS 244 (272)
T ss_dssp EEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBC-------------CCTTTTHHHHHHH-HHTGGGBBCTTSC
T ss_pred EEECCCCcCCccCHHHH------hCCcCCCEEEccCCCcc-------------ccCcHHHHHHHHH-HhCCCcccCcccc
Confidence 77777665433222212 23667777777776541 3466777777776 5677777766554
Q ss_pred c
Q 040304 607 L 607 (1000)
Q Consensus 607 L 607 (1000)
+
T Consensus 245 ~ 245 (272)
T 3rfs_A 245 V 245 (272)
T ss_dssp B
T ss_pred c
Confidence 4
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.5e-16 Score=182.68 Aligned_cols=214 Identities=12% Similarity=0.109 Sum_probs=103.4
Q ss_pred CccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEe
Q 040304 710 PVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRIS 789 (1000)
Q Consensus 710 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 789 (1000)
+++|+.|++++|......|..+..+++|+.|+|++|......+ +..+++|++|++++|. ++.+|. .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEE
Confidence 3466666666665444444555666666666666644322222 4445566666666542 333331 25555555
Q ss_pred ecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccc
Q 040304 790 IEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPL 868 (1000)
Q Consensus 790 l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~ 868 (1000)
+++| .+..++. ..+++|++|++++|......|.. +.+++|++|+|++|.+.+..
T Consensus 106 L~~N-~l~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 106 AANN-NISRVSC------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp CCSS-CCCCEEE------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CcCC-cCCCCCc------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 5553 2333322 23445555555555433333322 44555555555555555533
Q ss_pred cccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCC
Q 040304 869 VNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEA 948 (1000)
Q Consensus 869 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 948 (1000)
+......+++|+.|++++|. ++.++. ...+++|+.|++++| .++.+++ .+..+++|+.|++++| .+..+|..
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~-l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNF-IYDVKG----QVVFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSC-CCEEEC----CCCCTTCCEEECCSS-CCCEECG-GGGGGTTCSEEECTTS-CCCEECTT
T ss_pred hHHHhhhCCcccEEecCCCc-cccccc----cccCCCCCEEECCCC-CCCCCCH-hHcCCCCccEEEecCC-cCcccchh
Confidence 33212245555555555543 333322 112455555555555 4455442 2455555555555555 34444432
Q ss_pred -CCCCCcceEeecCCc
Q 040304 949 -GFPSSLLSLKIIGCP 963 (1000)
Q Consensus 949 -~~~~sL~~L~l~~c~ 963 (1000)
..+++|+.|++++|+
T Consensus 233 l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCCCTTCCEEECTTCC
T ss_pred hccCCCCCEEEcCCCC
Confidence 224555555555554
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.8e-17 Score=179.12 Aligned_cols=131 Identities=16% Similarity=0.125 Sum_probs=87.9
Q ss_pred CCccccceeccccCCCcccc---CCC--CCCCCccEEEeccccCcc--cccccccccCCccceEEECCCCCccccccccc
Q 040304 826 GKISSLQELSLKKCPGIVFF---PEE--GLSTNLTYLEISGANIYK--PLVNWGFHKLTSLRKLCINGCSDAASFPEVEK 898 (1000)
Q Consensus 826 ~~l~~L~~L~l~~~~~~~~~---~~~--~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 898 (1000)
+.+++|++|++++|...+.+ +.. ..+++|++|++++|.+.+ .++...+..+++|++|++++|. ++..+. ..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~ 247 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAG-AP 247 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCC-CS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccc-hh
Confidence 36778888888888754431 122 567788888888888764 2333345667888888888864 433321 12
Q ss_pred cccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCCCCCCcceEeecCCc
Q 040304 899 GVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGFPSSLLSLKIIGCP 963 (1000)
Q Consensus 899 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~ 963 (1000)
.+..+++|+.|++++| .++.+|. .+. ++|++|++++| .++.+|....+++|+.|++++|+
T Consensus 248 ~~~~l~~L~~L~Ls~N-~l~~ip~-~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFT-GLKQVPK-GLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCCTTCCEEECTTS-CCSSCCS-SCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred hhhhcCCCCEEECCCC-ccChhhh-hcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 2234578888888888 6777773 333 78888888888 67777764457888888888775
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=6.5e-16 Score=160.00 Aligned_cols=208 Identities=18% Similarity=0.163 Sum_probs=136.4
Q ss_pred CccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhh-hcCCcccccceeecccccccccc-
Q 040304 699 LLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAE-RFYDDACLRSILISSCDNLKSLP- 776 (1000)
Q Consensus 699 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~- 776 (1000)
.++.+|. .+++|+.|++++|......+..+..+++|++|++++|..++.++. .+..+++|++|++++|+.++.++
T Consensus 22 ~l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3555554 556888888888764444444677788888888888665666554 55667788888888755566665
Q ss_pred ccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccc---eeccccCCCccccCCC--CCC
Q 040304 777 IGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQ---ELSLKKCPGIVFFPEE--GLS 851 (1000)
Q Consensus 777 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~--~~l 851 (1000)
..+..+++|+.|++++| .++.+|. ...+++|+ +|++++|+.+..++.. ..+
T Consensus 99 ~~f~~l~~L~~L~l~~n-~l~~lp~-----------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNT-GLKMFPD-----------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp TSEECCTTCCEEEEEEE-CCCSCCC-----------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred HHhCCCCCCCEEeCCCC-CCccccc-----------------------cccccccccccEEECCCCcchhhcCcccccch
Confidence 45677788888888774 3444442 12344444 7777777445555543 557
Q ss_pred CCcc-EEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCC-CCcCeEEeccCCCccccCccccCCCC
Q 040304 852 TNLT-YLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILP-TSLTWIRISDFPKLERLSSKGFHYLV 929 (1000)
Q Consensus 852 ~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~l~ 929 (1000)
++|+ +|++++|.+. .++...|.. ++|+.|++++|..++.++. ..+..+ ++|+.|+++++ .++.+|.. .++
T Consensus 155 ~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~--~~~~~l~~~L~~L~l~~N-~l~~l~~~---~~~ 226 (239)
T 2xwt_C 155 CNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSLLDVSQT-SVTALPSK---GLE 226 (239)
T ss_dssp BSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECT--TTTTTCSBCCSEEECTTC-CCCCCCCT---TCT
T ss_pred hcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCH--HHhhccccCCcEEECCCC-ccccCChh---Hhc
Confidence 7777 8888887776 366555555 7788888887755666654 223345 77888888887 66777633 567
Q ss_pred ccccccccCCCC
Q 040304 930 SLESLEVFSCPN 941 (1000)
Q Consensus 930 ~L~~L~l~~c~~ 941 (1000)
+|+.|+++++..
T Consensus 227 ~L~~L~l~~~~~ 238 (239)
T 2xwt_C 227 HLKELIARNTWT 238 (239)
T ss_dssp TCSEEECTTC--
T ss_pred cCceeeccCccC
Confidence 788888877754
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=4.4e-16 Score=165.30 Aligned_cols=99 Identities=23% Similarity=0.236 Sum_probs=79.4
Q ss_pred CcceEEEcCCcccccccc-cccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEVPT-SIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.|++|++++|.++.++. .|..+++|++|+|++|.+..++. .+.++++|++|++++|.+....|..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 478999999999998865 78999999999999999998876 5899999999999999866666677899999999999
Q ss_pred cCccccccccc-cccCCcccCcc
Q 040304 371 DGANRLCELPL-GMKELKCLRTL 392 (1000)
Q Consensus 371 ~~~~~l~~ip~-~i~~L~~L~~L 392 (1000)
++| .+..++. .++++++|++|
T Consensus 108 ~~n-~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 108 VET-NLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp TTS-CCCCSTTCCCTTCTTCCEE
T ss_pred CCC-CccccCchhcccCCCCCEE
Confidence 988 4444443 35555555554
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.6e-16 Score=171.78 Aligned_cols=223 Identities=16% Similarity=0.095 Sum_probs=123.1
Q ss_pred ceEEEcCCccccc--cccccc-------CCCCccEeecCCCccc-ccchhh--hccCCCcEEeccCCcCcccCChhhhcc
Q 040304 295 LRVLSLGRYRISE--VPTSIG-------CLKHLRYLNFSESWIK-CLPEAI--TSLFNLEILILSDCRLLLKLPSSIGNL 362 (1000)
Q Consensus 295 L~~L~L~~n~l~~--lp~~~~-------~l~~L~~L~Ls~n~i~-~lp~~i--~~L~~L~~L~L~~~~~~~~lp~~i~~L 362 (1000)
|++|+|++|.++. +|..+. .+++|++|+|++|.+. .+|..+ +.+++|++|++++|.+.+. |..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 5666666666642 344443 5666666666666665 455544 5666666666666653333 5555555
Q ss_pred -----ccccceeecCcccccccc-ccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHH-
Q 040304 363 -----VNLYHLDIDGANRLCELP-LGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEA- 435 (1000)
Q Consensus 363 -----~~L~~L~L~~~~~l~~ip-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~- 435 (1000)
++|++|++++|. +..+| ..++++++|++|+...+. +. .......
T Consensus 144 ~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~------------------------l~----~~~~~~~~ 194 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNP------------------------EL----GERGLISA 194 (312)
T ss_dssp HTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCT------------------------TC----HHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCC------------------------cC----cchHHHHH
Confidence 666666666663 33333 456666666665321110 00 0000000
Q ss_pred -hhccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCC
Q 040304 436 -LLRVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRST 514 (1000)
Q Consensus 436 -~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~ 514 (1000)
.+..+++|+.|+++.+.. .. ........+..+++|+.|+++++.....++......+++|++|++++|.+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l------~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGM------ET-PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp SCTTSCTTCCEEECTTSCC------CC-HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred HHhccCCCCCEEECCCCcC------cc-hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 114455566666543322 00 001112233456778888888887766542111113688899999998877
Q ss_pred CCC-CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcceeeccCccc
Q 040304 515 SLP-SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQV 565 (1000)
Q Consensus 515 ~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 565 (1000)
.+| .+. ++|++|++++|... .++. + ..+++|+.|++++|+.
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~------~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLD-RNPS-P------DELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCC-SCCC-T------TTSCEEEEEECTTCTT
T ss_pred hhhhhcc--CCceEEECCCCCCC-CChh-H------hhCCCCCEEeccCCCC
Confidence 455 343 78899999888643 3332 3 3478899999988875
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1e-15 Score=164.82 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=77.6
Q ss_pred cCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 290 PKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
..+++|++|++++|.++.+| .+..+++|++|+|++|.+..+|. +..+++|++|++++|. +..+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 34668899999999998887 58889999999999999998887 8999999999999988 55565 488899999999
Q ss_pred ecCccccccccccccCCcccCcc
Q 040304 370 IDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 370 L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
+++| .+..+|. +..+++|++|
T Consensus 114 l~~n-~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 114 LTST-QITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp CTTS-CCCCCGG-GTTCTTCCEE
T ss_pred CCCC-CCCCchh-hcCCCCCCEE
Confidence 9988 4566653 5555555555
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=3.6e-15 Score=158.66 Aligned_cols=198 Identities=17% Similarity=0.186 Sum_probs=122.4
Q ss_pred cCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceE
Q 040304 732 QLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDV 811 (1000)
Q Consensus 732 ~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 811 (1000)
..+++++.+++++ ..+..+|..+. ++++.|++++|......+..+..+++|+.|+++++ .++.++..
T Consensus 7 ~~l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--------- 73 (290)
T ss_dssp ECSTTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC---------
T ss_pred cccCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC---------
Confidence 4456677777766 44566665554 57888888887654444567788888888888884 44444332
Q ss_pred eeccccCccCCCCCCCccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCc
Q 040304 812 SIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDA 890 (1000)
Q Consensus 812 ~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l 890 (1000)
+.+++|++|++++|. +..+|.. ..+++|++|++++|.+.+ ++...|..+++|++|++++| .+
T Consensus 74 --------------~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N-~l 136 (290)
T 1p9a_G 74 --------------GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGN-EL 136 (290)
T ss_dssp --------------SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTS-CC
T ss_pred --------------CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCC-CC
Confidence 245556666666664 3344443 556666666666666655 44335666667777777665 34
Q ss_pred cccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCCC-CCCcceEeecCCc
Q 040304 891 ASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGF-PSSLLSLKIIGCP 963 (1000)
Q Consensus 891 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~sL~~L~l~~c~ 963 (1000)
+.++. ..+..+++|+.|++++| .++.++...+..+++|+.|++++| .++.+|...+ ..+|+.|++++||
T Consensus 137 ~~~~~--~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 137 KTLPP--GLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCT--TTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CccCh--hhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 44443 12234566677777666 666666556667777777777777 5667765433 4567777777665
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.6e-15 Score=159.74 Aligned_cols=99 Identities=24% Similarity=0.304 Sum_probs=73.5
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChhhhccccccc
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYH 367 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 367 (1000)
+.++++++.++++++.++.+|..+. +++++|+|++|.+..++ ..|.++++|++|++++|. +..+|. .+.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC-CCCCCcCCE
Confidence 4567788888888888888887664 67888888888888775 458888888888888887 444554 367888888
Q ss_pred eeecCccccccccccccCCcccCcc
Q 040304 368 LDIDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 368 L~L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
|++++| .+..+|..+..+++|++|
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEE
T ss_pred EECCCC-cCCcCchhhccCCCCCEE
Confidence 888888 566777666666665555
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=2.7e-15 Score=159.17 Aligned_cols=205 Identities=18% Similarity=0.180 Sum_probs=128.3
Q ss_pred CCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceE
Q 040304 709 LPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRI 788 (1000)
Q Consensus 709 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 788 (1000)
++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45667777777775444444466667777777777753322223345556677777777665443334556666777777
Q ss_pred eecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCcc-ccCCC-CCCCCccEEEeccccCcc
Q 040304 789 SIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIV-FFPEE-GLSTNLTYLEISGANIYK 866 (1000)
Q Consensus 789 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~-~~l~~L~~L~L~~n~~~~ 866 (1000)
++++| .+..++. .+...+++|++|++++|.... .+|.. ..+++|++|++++|.+.+
T Consensus 106 ~l~~n-~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 106 VAVET-NLASLEN---------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp ECTTS-CCCCSTT---------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ECCCC-CccccCc---------------------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 77663 2222221 123467788888888876433 23444 667888888888888776
Q ss_pred cccccccccCCccc----eEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCC
Q 040304 867 PLVNWGFHKLTSLR----KLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPN 941 (1000)
Q Consensus 867 ~~~~~~~~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~ 941 (1000)
++...+..+++|+ .|++++| .++.++... ....+|+.|++++| .++.++...+..+++|+.|++++|+-
T Consensus 164 -~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~---~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 164 -IYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA---FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp -ECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTS---SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred -CCHHHhhhhhhccccceeeecCCC-cccccCccc---cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence 3333566666666 7888875 355554411 23347888888888 57777766677788888888888754
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=7.2e-15 Score=155.14 Aligned_cols=176 Identities=21% Similarity=0.254 Sum_probs=77.0
Q ss_pred ccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceecccc
Q 040304 759 ACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKK 838 (1000)
Q Consensus 759 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~ 838 (1000)
+++++|++++|......+..+..+++|++|+++++ .++.++...+ ..+++|++|++++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~---------------------~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIF---------------------KELKNLETLWVTD 94 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTT---------------------SSCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhh---------------------cCCCCCCEEECCC
Confidence 35566666654322222234556666666666663 3334433221 1334444444444
Q ss_pred CCCccccCCC--CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCC
Q 040304 839 CPGIVFFPEE--GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPK 916 (1000)
Q Consensus 839 ~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 916 (1000)
|... .++.. ..+++|++|++++|.+.+ ++...|..+++|++|++++| .++.++. ..+..+++|+.|++++| .
T Consensus 95 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~ 168 (270)
T 2o6q_A 95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYN-ELQSLPK--GVFDKLTSLKELRLYNN-Q 168 (270)
T ss_dssp SCCC-CCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS-C
T ss_pred CcCC-cCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCC-cCCccCH--hHccCCcccceeEecCC-c
Confidence 4322 22211 334444444444444443 22223444444444444443 2333332 11223344444444444 4
Q ss_pred ccccCccccCCCCccccccccCCCCCcCCCCCCC--CCCcceEeecCCc
Q 040304 917 LERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGF--PSSLLSLKIIGCP 963 (1000)
Q Consensus 917 l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~l~~c~ 963 (1000)
++.++...+..+++|+.|++++| .++.+|...+ +++|+.|++++||
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 44444344445555555555555 3444443222 3455555555544
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=5.8e-15 Score=162.23 Aligned_cols=226 Identities=22% Similarity=0.185 Sum_probs=147.6
Q ss_pred CccccccCCCCCccccEEEEecccCceecc-ccccCccccceEeecCCCchhhhhh-hcCCcccccceeeccccccccc-
Q 040304 699 LLTCLWTGGWLPVTLKRLEIWCCYNFKVLT-SECQLPVAIEALTISNCSNLESIAE-RFYDDACLRSILISSCDNLKSL- 775 (1000)
Q Consensus 699 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~- 775 (1000)
.++.+|.. +++++++|++++|. ++.+| ..|.++++|++|+|++|..++.++. .|..+++++.+.+.+++.+..+
T Consensus 20 ~Lt~iP~~--l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 20 KVTEIPSD--LPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TCCSCCTT--CCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCccCcC--cCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 34555543 46788999998875 45555 4678888999999998877776654 4556777777666666667766
Q ss_pred cccccCCCCcceEeecCCCCccccCCCCCC--CCCceEeeccccCccCCCCCC---Cc-cccceeccccCCCccccCCC-
Q 040304 776 PIGLNNLSHLHRISIEGCHNLVSLPEDALP--SSVVDVSIEECDKLKGPLPTG---KI-SSLQELSLKKCPGIVFFPEE- 848 (1000)
Q Consensus 776 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~---~l-~~L~~L~l~~~~~~~~~~~~- 848 (1000)
|..+..+++|+.|++++ +.+..++...+. .++..+++.+++.+.. ++.. .+ ..+++|++++|. ++.++..
T Consensus 97 ~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~ 173 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNG-IQEIHNSA 173 (350)
T ss_dssp TTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSC-CCEECTTS
T ss_pred chhhhhccccccccccc-cccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhcccccc-ccCCChhh
Confidence 45678889999999988 456666654443 3555666666665554 3322 22 356667777765 3444443
Q ss_pred CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCC
Q 040304 849 GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYL 928 (1000)
Q Consensus 849 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l 928 (1000)
....+|++|++++|+..+.++...|..+++|+.|++++| .++.+|. ..+.+|+.|++.++.+++.+| .+..+
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP--~l~~l 245 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS-----YGLENLKKLRARSTYNLKKLP--TLEKL 245 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS-----SSCTTCCEEECTTCTTCCCCC--CTTTC
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh-----hhhccchHhhhccCCCcCcCC--CchhC
Confidence 445667777777655555566656677777777777775 4666665 235667777777776677666 46666
Q ss_pred CccccccccC
Q 040304 929 VSLESLEVFS 938 (1000)
Q Consensus 929 ~~L~~L~l~~ 938 (1000)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 6777766654
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=2.8e-15 Score=172.01 Aligned_cols=234 Identities=10% Similarity=0.071 Sum_probs=164.1
Q ss_pred CccCCcceeEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhcCCcccccc
Q 040304 684 STCLDLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERFYDDACLRS 763 (1000)
Q Consensus 684 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 763 (1000)
..+++|+.|++++|......+..+..+++|+.|++++|......+ +..+++|++|++++| .+..++. .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCE
Confidence 356789999999998877666667778899999999997555444 888999999999996 4555542 279999
Q ss_pred eeeccccccccccccccCCCCcceEeecCCCCccccCCCC--CCCCCceEeeccccCccCCCCC--C-Cccccceecccc
Q 040304 764 ILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDA--LPSSVVDVSIEECDKLKGPLPT--G-KISSLQELSLKK 838 (1000)
Q Consensus 764 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~--~-~l~~L~~L~l~~ 838 (1000)
|++++|... .++. ..+++|+.|++++| .++.+++.. ..++|+.|++++|. +++..|. . .+++|++|++++
T Consensus 104 L~L~~N~l~-~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 104 LHAANNNIS-RVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EECCSSCCC-CEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTT
T ss_pred EECcCCcCC-CCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCC
Confidence 999998644 4432 34789999999995 455444332 24678888887754 3332222 1 567888888888
Q ss_pred CCCccccCCCCCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCc-
Q 040304 839 CPGIVFFPEEGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKL- 917 (1000)
Q Consensus 839 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l- 917 (1000)
|. +..++....+++|+.|+|++|.+.+ ++. .+..+++|+.|++++| .+..+|. .+..+++|+.|++++|+..
T Consensus 179 N~-l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N-~l~~lp~---~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 179 NF-IYDVKGQVVFAKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNN-KLVLIEK---ALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp SC-CCEEECCCCCTTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTS-CCCEECT---TCCCCTTCCEEECTTCCBCH
T ss_pred Cc-cccccccccCCCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCC-cCcccch---hhccCCCCCEEEcCCCCCcC
Confidence 76 3344545567888888888888776 444 3777888888888875 4555665 2345577888888887544
Q ss_pred cccCccccCCCCcccccccc
Q 040304 918 ERLSSKGFHYLVSLESLEVF 937 (1000)
Q Consensus 918 ~~l~~~~~~~l~~L~~L~l~ 937 (1000)
..++ .++..++.|+.+++.
T Consensus 252 ~~~~-~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLR-DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHH-HHHTTCHHHHHHHHH
T ss_pred cchH-HHHHhCCCCcEEecc
Confidence 2333 556677777777775
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=4.6e-14 Score=155.05 Aligned_cols=237 Identities=20% Similarity=0.201 Sum_probs=182.8
Q ss_pred cEEEEecccCceeccccccCccccceEeecCCCchhhhhh-hcCCcccccceeeccccccccccc-cccCCCCcceEeec
Q 040304 714 KRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAE-RFYDDACLRSILISSCDNLKSLPI-GLNNLSHLHRISIE 791 (1000)
Q Consensus 714 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~ 791 (1000)
+.++.+++ .++.+|..+ .+++++|+|+++ .++.++. .|..+++|++|++++|..++.+|. .|.+++++.++.+.
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34555443 567777654 468999999995 5777775 577899999999999988887764 57889999988887
Q ss_pred CCCCccccCCCCCC--CCCceEeeccccCccCCCCC--CCccccceeccccCCCccccCCC---CCCCCccEEEeccccC
Q 040304 792 GCHNLVSLPEDALP--SSVVDVSIEECDKLKGPLPT--GKISSLQELSLKKCPGIVFFPEE---GLSTNLTYLEISGANI 864 (1000)
Q Consensus 792 ~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~---~~l~~L~~L~L~~n~~ 864 (1000)
+++.++.+++..+. ++|+.|++++|. ++...+. ....++..|++.++..+..++.. +....++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 77899999876654 799999999865 4442222 25667888999887778877765 3345799999999998
Q ss_pred cccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcC
Q 040304 865 YKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTS 944 (1000)
Q Consensus 865 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 944 (1000)
.. ++...| ..++|++|++++++.++.+|. ..+..+++|+.|++++| +++.+|...+. +|+.|.+.+|..++.
T Consensus 167 ~~-i~~~~f-~~~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs~N-~l~~lp~~~~~---~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 167 QE-IHNSAF-NGTQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRT-RIHSLPSYGLE---NLKKLRARSTYNLKK 238 (350)
T ss_dssp CE-ECTTSS-TTEEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECTTS-CCCCCCSSSCT---TCCEEECTTCTTCCC
T ss_pred cC-CChhhc-cccchhHHhhccCCcccCCCH--HHhccCcccchhhcCCC-CcCccChhhhc---cchHhhhccCCCcCc
Confidence 76 666444 567999999999999999986 34557799999999999 89999865554 556666666778899
Q ss_pred CCCCCCCCCcceEeecCCc
Q 040304 945 FPEAGFPSSLLSLKIIGCP 963 (1000)
Q Consensus 945 l~~~~~~~sL~~L~l~~c~ 963 (1000)
+|....+++|+.+++.+..
T Consensus 239 lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 239 LPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCTTTCCSCCEEECSCHH
T ss_pred CCCchhCcChhhCcCCCCc
Confidence 9976678999999997643
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=8.2e-15 Score=154.80 Aligned_cols=173 Identities=21% Similarity=0.249 Sum_probs=131.8
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccc
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYH 367 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 367 (1000)
+..+++|++|++++|.++.++ .+..+++|++|+|++|.++.+|.. ++++++|++|++++|.+....|..++.+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 677899999999999999875 689999999999999999998866 799999999999999965555556899999999
Q ss_pred eeecCcccccccccc-ccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCcee
Q 040304 368 LDIDGANRLCELPLG-MKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVL 446 (1000)
Q Consensus 368 L~L~~~~~l~~ip~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 446 (1000)
|++++| .+..+|.. ++.+++|++|
T Consensus 138 L~L~~n-~l~~~~~~~~~~l~~L~~L------------------------------------------------------ 162 (272)
T 3rfs_A 138 LNLAHN-QLQSLPKGVFDKLTNLTEL------------------------------------------------------ 162 (272)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEE------------------------------------------------------
T ss_pred EECCCC-ccCccCHHHhccCccCCEE------------------------------------------------------
Confidence 999999 56666543 4555555544
Q ss_pred EEEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCC
Q 040304 447 KLEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSL 525 (1000)
Q Consensus 447 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L 525 (1000)
+++++....+|..... .+++|++|++++|.+.+..+ .++.+++|
T Consensus 163 ----------------------------------~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 163 ----------------------------------DLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp ----------------------------------ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------------ECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 3333334444443221 37788888888888776655 46788888
Q ss_pred CeEEEeecccceeecccccCCCCCCCCCCcceeeccCccc
Q 040304 526 KDLTIVRMSALKGIGSEINGECCSKPFPSLQTLYFEDLQV 565 (1000)
Q Consensus 526 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 565 (1000)
+.|++++|+.. ..+++|+.|+++.|..
T Consensus 208 ~~L~l~~N~~~-------------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 208 QYIWLHDNPWD-------------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp CEEECCSSCBC-------------CCTTTTHHHHHHHHHT
T ss_pred CEEEccCCCcc-------------ccCcHHHHHHHHHHhC
Confidence 99988888532 1267888888877765
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=3.3e-16 Score=171.80 Aligned_cols=233 Identities=17% Similarity=0.170 Sum_probs=149.3
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccc--cchhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKC--LPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.+++|++++|.+...+..+..+++|++|+|++|.+.. +|..+..+++|++|++++|.+....|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 68899999999998876667789999999999998874 7778999999999999999866677888889999999999
Q ss_pred cCccccc--cccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEE
Q 040304 371 DGANRLC--ELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKL 448 (1000)
Q Consensus 371 ~~~~~l~--~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 448 (1000)
++|..+. .+|..+.++++|++|+..... .+ ........+..++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-----------------------~l-----~~~~~~~~~~~l~------- 194 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCF-----------------------DF-----TEKHVQVAVAHVS------- 194 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------------TC-----CHHHHHHHHHHSC-------
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----------------------Cc-----ChHHHHHHHHhcc-------
Confidence 9984444 355556677777776321110 00 0001111223333
Q ss_pred EeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeC--C--CCCCcccCCCCCCceeEEEEcCCC-CCC-CCCCCCCc
Q 040304 449 EWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYG--G--TRFPSWIGDPSFSNVAVLILKNCR-RST-SLPSLGQL 522 (1000)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~--~~~p~~~~~~~~~~L~~L~L~~~~-~~~-~l~~~~~l 522 (1000)
++|++|+++++. . ..+|..+. .+++|++|++++|. +.. .++.+..+
T Consensus 195 --------------------------~~L~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 195 --------------------------ETITQLNLSGYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp --------------------------TTCCEEECCSCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred --------------------------cCCCEEEeCCCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 044455554442 1 12333333 26778888888887 332 33467778
Q ss_pred CCCCeEEEeecccceeecc-cccCCCCCCCCCCcceeeccCcccccccCCCCCCccccccC-CccceEEecCCcccccCC
Q 040304 523 CSLKDLTIVRMSALKGIGS-EINGECCSKPFPSLQTLYFEDLQVWEKWEPNTENDEHVQAF-PRLQKLFIHKCPKLSGRL 600 (1000)
Q Consensus 523 ~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~ 600 (1000)
++|++|++++|..+....- .+ ..+++|+.|++++| . . ...+..+ ..+..|++++ +++++..
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l------~~~~~L~~L~l~~~-i-~--------~~~~~~l~~~l~~L~l~~-n~l~~~~ 309 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLEL------GEIPTLKTLQVFGI-V-P--------DGTLQLLKEALPHLQINC-SHFTTIA 309 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGG------GGCTTCCEEECTTS-S-C--------TTCHHHHHHHSTTSEESC-CCSCCTT
T ss_pred CCCCEeeCCCCCCCCHHHHHHH------hcCCCCCEEeccCc-c-C--------HHHHHHHHhhCcceEEec-ccCcccc
Confidence 8888888888863221111 11 23788888888887 1 1 1111223 3466666764 7888777
Q ss_pred CCCCC
Q 040304 601 PNHLP 605 (1000)
Q Consensus 601 p~~l~ 605 (1000)
|....
T Consensus 310 ~~~~~ 314 (336)
T 2ast_B 310 RPTIG 314 (336)
T ss_dssp CSSCS
T ss_pred CCccc
Confidence 76544
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=1.5e-14 Score=155.49 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=126.4
Q ss_pred hhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccc
Q 040304 288 LLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYH 367 (1000)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 367 (1000)
.+..+++|++|+|++|.++.++. +..+++|++|+|++|.+..+| .+..+++|++|++++|. +..+|. +..+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCE
Confidence 36789999999999999999987 999999999999999999986 69999999999999998 555665 999999999
Q ss_pred eeecCccccccccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeE
Q 040304 368 LDIDGANRLCELPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLK 447 (1000)
Q Consensus 368 L~L~~~~~l~~ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 447 (1000)
|++++| .+..+|. ++.+++|+.|+.. .+.+...
T Consensus 134 L~l~~n-~l~~~~~-l~~l~~L~~L~l~------------------------~n~l~~~--------------------- 166 (308)
T 1h6u_A 134 LYLDLN-QITNISP-LAGLTNLQYLSIG------------------------NAQVSDL--------------------- 166 (308)
T ss_dssp EECCSS-CCCCCGG-GGGCTTCCEEECC------------------------SSCCCCC---------------------
T ss_pred EECCCC-ccCcCcc-ccCCCCccEEEcc------------------------CCcCCCC---------------------
Confidence 999999 5666665 6677777766321 1111000
Q ss_pred EEeecCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCe
Q 040304 448 LEWRARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKD 527 (1000)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~ 527 (1000)
..+..+++|+.|+++++....++. +. .+++|++|++++|.+.+.. .+..+++|+.
T Consensus 167 ---------------------~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~ 221 (308)
T 1h6u_A 167 ---------------------TPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLFI 221 (308)
T ss_dssp ---------------------GGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCCE
T ss_pred ---------------------hhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCCE
Confidence 013345566666666666665554 22 3677777777777765433 4667777777
Q ss_pred EEEeecc
Q 040304 528 LTIVRMS 534 (1000)
Q Consensus 528 L~L~~~~ 534 (1000)
|++++|.
T Consensus 222 L~l~~N~ 228 (308)
T 1h6u_A 222 VTLTNQT 228 (308)
T ss_dssp EEEEEEE
T ss_pred EEccCCe
Confidence 7777775
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=156.46 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=27.4
Q ss_pred CCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCCCCCCcceEeecCCc
Q 040304 904 TSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGFPSSLLSLKIIGCP 963 (1000)
Q Consensus 904 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~~c~ 963 (1000)
++|+.|++++| .++.+|. .+. ++|+.|++++| .++.+|....+++|+.|++++|+
T Consensus 251 ~~L~~L~Ls~N-~l~~lp~-~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQVPK-GLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTCCCEECCSS-CCCSCCS-CCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCCEEECCCC-CCCchhh-hhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 44555555554 4444442 221 45555566555 44554443334556666666554
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=155.72 Aligned_cols=198 Identities=16% Similarity=0.129 Sum_probs=135.4
Q ss_pred cccEEEEecccCceeccccc--cCccccceEeecCCCchhhhh----hhcCCcccccceeeccccccccccccccCCCCc
Q 040304 712 TLKRLEIWCCYNFKVLTSEC--QLPVAIEALTISNCSNLESIA----ERFYDDACLRSILISSCDNLKSLPIGLNNLSHL 785 (1000)
Q Consensus 712 ~L~~L~l~~~~~l~~l~~~~--~~~~~L~~L~L~~~~~l~~l~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 785 (1000)
+|++|++++|......|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 46666666665444555554 566677777777755433221 233356788888888876655555677788888
Q ss_pred ceEeecCCCCccc--cCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCC-----CCCCCccEEE
Q 040304 786 HRISIEGCHNLVS--LPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE-----GLSTNLTYLE 858 (1000)
Q Consensus 786 ~~L~l~~c~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~l~~L~~L~ 858 (1000)
++|++++|..... ++.. .....+++|++|++++|.. +.++.. ..+++|++|+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~--------------------~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAA--------------------LCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp CEEECCSCTTCHHHHHHTT--------------------SCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEE
T ss_pred CEEECCCCCCccchhhhHH--------------------HhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEE
Confidence 8888888543221 1110 1123678899999999864 333321 4568999999
Q ss_pred eccccCcccccccccccC---CccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCcccccc
Q 040304 859 ISGANIYKPLVNWGFHKL---TSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLE 935 (1000)
Q Consensus 859 L~~n~~~~~~~~~~~~~l---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~ 935 (1000)
|++|.+.+..|. .+..+ ++|++|++++| .++.+|. ..+++|+.|++++| +++.+| .+..+++|+.|+
T Consensus 231 Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N-~l~~lp~-----~~~~~L~~L~Ls~N-~l~~~~--~~~~l~~L~~L~ 300 (310)
T 4glp_A 231 LSHNSLRATVNP-SAPRCMWSSALNSLNLSFA-GLEQVPK-----GLPAKLRVLDLSSN-RLNRAP--QPDELPEVDNLT 300 (310)
T ss_dssp CTTSCCCCCCCS-CCSSCCCCTTCCCEECCSS-CCCSCCS-----CCCSCCSCEECCSC-CCCSCC--CTTSCCCCSCEE
T ss_pred CCCCCCCccchh-hHHhccCcCcCCEEECCCC-CCCchhh-----hhcCCCCEEECCCC-cCCCCc--hhhhCCCccEEE
Confidence 999998886554 34554 79999999986 4667776 23589999999999 788776 367889999999
Q ss_pred ccCCC
Q 040304 936 VFSCP 940 (1000)
Q Consensus 936 l~~c~ 940 (1000)
+++|+
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 99995
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=5.1e-14 Score=146.74 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=63.3
Q ss_pred cceEEEcCCcccccccccccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 294 KLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
..++++++++.++.+|..+. .+|++|+|++|.+..++. .++++++|++|+|++|.+....|..|..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45677777777777776655 577777777777777664 377777777777777775555555577777777777777
Q ss_pred cccccccccc-ccCCcccCcc
Q 040304 373 ANRLCELPLG-MKELKCLRTL 392 (1000)
Q Consensus 373 ~~~l~~ip~~-i~~L~~L~~L 392 (1000)
| .+..+|.. +..+++|++|
T Consensus 93 n-~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 93 N-QLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp S-CCCCCCTTTTTTCTTCCEE
T ss_pred C-cccccChhHhcccCCCCEE
Confidence 7 34444432 3444444333
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=4.9e-15 Score=162.42 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=65.4
Q ss_pred CccccceEeecCCCchhh-hhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccc--cCC-CCCCCCC
Q 040304 733 LPVAIEALTISNCSNLES-IAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVS--LPE-DALPSSV 808 (1000)
Q Consensus 733 ~~~~L~~L~L~~~~~l~~-l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~-~~~~~~L 808 (1000)
.+++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..++. ++. ....++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 344555555555442222 444444455555555555543333444455555555555555433331 111 0001222
Q ss_pred ceEeeccccCccCC-CC--CCCcc-ccceeccccCC-Cc--cccCCC-CCCCCccEEEecccc-CcccccccccccCCcc
Q 040304 809 VDVSIEECDKLKGP-LP--TGKIS-SLQELSLKKCP-GI--VFFPEE-GLSTNLTYLEISGAN-IYKPLVNWGFHKLTSL 879 (1000)
Q Consensus 809 ~~L~l~~~~~l~~~-~~--~~~l~-~L~~L~l~~~~-~~--~~~~~~-~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L 879 (1000)
++|++++|..+++. ++ ...++ +|++|++++|. .+ ..++.. ..+++|++|++++|. +.+..+. .+..+++|
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L 249 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYL 249 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCC
Confidence 22222222111110 00 11344 55555555553 11 112222 335555555555555 3332222 34555555
Q ss_pred ceEEECCCC
Q 040304 880 RKLCINGCS 888 (1000)
Q Consensus 880 ~~L~l~~~~ 888 (1000)
++|++++|.
T Consensus 250 ~~L~l~~~~ 258 (336)
T 2ast_B 250 QHLSLSRCY 258 (336)
T ss_dssp CEEECTTCT
T ss_pred CEeeCCCCC
Confidence 555555554
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=3.9e-15 Score=166.43 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=71.6
Q ss_pred hhhhcCCCcceEEEcCCccccc-----ccccccCCCCccEeecCCCccc----ccchhh-------hccCCCcEEeccCC
Q 040304 286 SDLLPKCKKLRVLSLGRYRISE-----VPTSIGCLKHLRYLNFSESWIK----CLPEAI-------TSLFNLEILILSDC 349 (1000)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp~~i-------~~L~~L~~L~L~~~ 349 (1000)
...+..++.|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 4456778899999999999874 4455788999999999997655 345444 78899999999999
Q ss_pred cCcc----cCChhhhccccccceeecCcc
Q 040304 350 RLLL----KLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 350 ~~~~----~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
.+.. .+|..+..+++|++|++++|.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 8655 477788999999999999994
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.2e-13 Score=147.12 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=72.5
Q ss_pred cCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 290 PKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
..+++|++|++++|.+..+|. +..+++|++|+|++|.++.++. ++++++|++|++++|. +..+|. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 346678888888888887764 7778888888888888888876 8888888888888887 444554 78888888888
Q ss_pred ecCccccccccccccCCcccCcc
Q 040304 370 IDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 370 L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
+++| .+..++ .+..+++|+.|
T Consensus 119 L~~n-~i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 119 LEHN-GISDIN-GLVHLPQLESL 139 (291)
T ss_dssp CTTS-CCCCCG-GGGGCTTCCEE
T ss_pred CCCC-cCCCCh-hhcCCCCCCEE
Confidence 8888 455553 45556666655
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=6.6e-14 Score=139.76 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=79.8
Q ss_pred cCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 290 PKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
..+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+....|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 44568899999999999888 6888999999999999887765 688899999999999986666777788999999999
Q ss_pred ecCccccccccccccCCcccCcc
Q 040304 370 IDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 370 L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
+++|......|..++.+++|++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEE
Confidence 99984433455555555555554
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=3.6e-13 Score=140.28 Aligned_cols=99 Identities=23% Similarity=0.316 Sum_probs=81.2
Q ss_pred CcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.+++|+|++|.++.+ |..|..+++|++|+|++|.+..++.. +.++++|++|++++|.+....|..|..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 5799999999999988 45799999999999999999988765 899999999999999965555566899999999999
Q ss_pred cCcccccccccc-ccCCcccCcc
Q 040304 371 DGANRLCELPLG-MKELKCLRTL 392 (1000)
Q Consensus 371 ~~~~~l~~ip~~-i~~L~~L~~L 392 (1000)
++| .+..+|.. +..+++|++|
T Consensus 115 ~~N-~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 115 GGN-QLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCC-cCCCcChhHhccCCcccEE
Confidence 999 56666654 3444444444
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=2.9e-14 Score=157.52 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=82.6
Q ss_pred chhhhhhhcCCCcceEEEcCCccccccc-----ccccCCC-CccEeecCCCccccc-chhhhcc-----CCCcEEeccCC
Q 040304 282 PMVISDLLPKCKKLRVLSLGRYRISEVP-----TSIGCLK-HLRYLNFSESWIKCL-PEAITSL-----FNLEILILSDC 349 (1000)
Q Consensus 282 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~Ls~n~i~~l-p~~i~~L-----~~L~~L~L~~~ 349 (1000)
...++..+...+.|++|+|++|.++..+ ..+..++ +|++|+|++|.+... +..+..+ ++|++|+|++|
T Consensus 11 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 11 SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 3456666777777999999999999775 6678888 899999999999876 4457665 99999999999
Q ss_pred cCcccCChhhhcc-----ccccceeecCccccccccc-c----ccC-CcccCcc
Q 040304 350 RLLLKLPSSIGNL-----VNLYHLDIDGANRLCELPL-G----MKE-LKCLRTL 392 (1000)
Q Consensus 350 ~~~~~lp~~i~~L-----~~L~~L~L~~~~~l~~ip~-~----i~~-L~~L~~L 392 (1000)
.+....+..++.. ++|++|++++|. ++..+. . +.. .++|++|
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEE
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEE
Confidence 8655555555544 899999999994 555443 2 223 2466666
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=2e-15 Score=168.89 Aligned_cols=101 Identities=19% Similarity=0.102 Sum_probs=79.1
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccc-----cchhhhccCCCcEEeccCCc---CcccCChhh-----
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKC-----LPEAITSLFNLEILILSDCR---LLLKLPSSI----- 359 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~---~~~~lp~~i----- 359 (1000)
+.|++..++...+..++..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|. +.+.+|..+
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 35566566666677888889999999999999998875 44557799999999999974 234566555
Q ss_pred --hccccccceeecCcccccc-----ccccccCCcccCccCc
Q 040304 360 --GNLVNLYHLDIDGANRLCE-----LPLGMKELKCLRTLTN 394 (1000)
Q Consensus 360 --~~L~~L~~L~L~~~~~l~~-----ip~~i~~L~~L~~L~~ 394 (1000)
..+++|++|++++|. ++. +|..+.++++|++|+.
T Consensus 89 ~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L 129 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYL 129 (386)
T ss_dssp HHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEEC
T ss_pred HHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEEC
Confidence 688999999999995 444 7777888888888843
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=2.2e-13 Score=157.17 Aligned_cols=87 Identities=29% Similarity=0.427 Sum_probs=72.3
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecC
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~ 372 (1000)
.+|++|+|++|.++.+|..+. ++|++|+|++|.|+.+| +.+++|++|++++|.+ ..+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCC
Confidence 389999999999999998764 89999999999999999 5689999999999984 45888 765 999999999
Q ss_pred ccccccccccccCCcccCcc
Q 040304 373 ANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 373 ~~~l~~ip~~i~~L~~L~~L 392 (1000)
| .+..+|. .+++|+.|
T Consensus 130 N-~l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 130 N-QLTMLPE---LPALLEYI 145 (571)
T ss_dssp S-CCSCCCC---CCTTCCEE
T ss_pred C-cCCCCCC---cCccccEE
Confidence 9 5666776 34555544
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=9.6e-13 Score=132.74 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=42.8
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceeecCc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~ 373 (1000)
+.++++++.++.+|..+ .++|++|+|++|.++.+|.. ++++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555566666665443 24566666666666665544 556666666666666533222233556666666666665
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=3.9e-13 Score=157.10 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=68.7
Q ss_pred cCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 290 PKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
..++.|+.|++++|.+..+| .+..+++|++|+|++|.+..+|. +..+++|++|+|++|. +..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 45567777888888877776 47777888888888888777766 7788888888888876 44455 477788888888
Q ss_pred ecCccccccccccccCCcccCcc
Q 040304 370 IDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 370 L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
|++| .+..+| .+..+++|+.|
T Consensus 116 Ls~N-~l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 116 LEHN-GISDIN-GLVHLPQLESL 136 (605)
T ss_dssp CTTS-CCCCCG-GGGGCTTCSEE
T ss_pred ecCC-CCCCCc-cccCCCccCEE
Confidence 8777 455543 35555555555
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=1e-12 Score=133.40 Aligned_cols=93 Identities=22% Similarity=0.356 Sum_probs=61.9
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceeecCcc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
+.++++++.++.+|..+. .+|++|+|++|.|+.+|. .|..+++|++|+|++|.+....|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 467777777777776554 567777777777777765 4777777777777777755555666777777777777777
Q ss_pred cccccccc-ccCCcccCc
Q 040304 375 RLCELPLG-MKELKCLRT 391 (1000)
Q Consensus 375 ~l~~ip~~-i~~L~~L~~ 391 (1000)
.+..+|.. +..+++|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCCCCCTTTTTTCTTCCE
T ss_pred cCCccCHhHccCCCCCCE
Confidence 45555543 333443333
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=7.5e-13 Score=135.44 Aligned_cols=99 Identities=27% Similarity=0.383 Sum_probs=79.5
Q ss_pred CcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.|++|+|++|.++.+ |..|..+++|++|+|++|.+..+|.. |..+++|++|+|++|.+....+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6789999999999877 67788999999999999999988865 788999999999999854444455788999999999
Q ss_pred cCccccccccccccCCcccCcc
Q 040304 371 DGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 371 ~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
++| .+..+|..+..+++|++|
T Consensus 120 s~N-~l~~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 120 CCN-KLTELPRGIERLTHLTHL 140 (229)
T ss_dssp CSS-CCCSCCTTGGGCTTCSEE
T ss_pred cCC-cccccCcccccCCCCCEE
Confidence 988 566777666555555544
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=6.5e-13 Score=155.24 Aligned_cols=93 Identities=26% Similarity=0.308 Sum_probs=75.4
Q ss_pred cceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCc
Q 040304 294 KLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~ 373 (1000)
.+..+.+..+.+..++. +..+.+|++|++++|.+..+| .++.+++|++|+|++|. +..+|. +..+++|+.|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC
Confidence 45566677777776644 578899999999999999997 59999999999999998 455665 999999999999999
Q ss_pred cccccccccccCCcccCcc
Q 040304 374 NRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 374 ~~l~~ip~~i~~L~~L~~L 392 (1000)
.+..+| .+..+++|++|
T Consensus 98 -~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 98 -KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp -CCCCCT-TSTTCTTCCEE
T ss_pred -CCCCCh-hhccCCCCCEE
Confidence 566665 56677777766
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.1e-12 Score=137.17 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=52.3
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+..+++|++|++++|.++.+| .+..+++|++|+|++|.+..+|. ++++++|++|++++|. +..+|. +.. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEE
Confidence 445566666666666666666 46666666666666666666665 6666666666666665 344444 222 666666
Q ss_pred eecCccccccc
Q 040304 369 DIDGANRLCEL 379 (1000)
Q Consensus 369 ~L~~~~~l~~i 379 (1000)
++++| .+..+
T Consensus 112 ~L~~N-~l~~~ 121 (263)
T 1xeu_A 112 FLDNN-ELRDT 121 (263)
T ss_dssp ECCSS-CCSBS
T ss_pred EccCC-ccCCC
Confidence 66666 34444
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=2e-12 Score=149.12 Aligned_cols=180 Identities=20% Similarity=0.285 Sum_probs=109.2
Q ss_pred ccceEeecCCCchhhhhhhcCCcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeecc
Q 040304 736 AIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEE 815 (1000)
Q Consensus 736 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 815 (1000)
+++.|+++++. +..+|..+. ++|++|++++|. ++.+| ..+++|+.|++++| .++.+|. ++.+|+.|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~--l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE--LPASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch--hhcCCCEEECCC
Confidence 45555555532 334444332 466666666653 44555 34566777777763 4555655 444677777766
Q ss_pred ccCccCCCCCCCccccceeccccCCCccccCCCCCCCCccEEEeccccCcccccccccccCCccceEEECCCCCcccccc
Q 040304 816 CDKLKGPLPTGKISSLQELSLKKCPGIVFFPEEGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPE 895 (1000)
Q Consensus 816 ~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 895 (1000)
| .+++ +|. .+++|++|++++|.. ..+|. .+++|++|+|++|.+.+ +|. +. ++|+.|++++| .++.+|.
T Consensus 130 N-~l~~-lp~-~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 130 N-QLTM-LPE-LPALLEYINADNNQL-TMLPE--LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp S-CCSC-CCC-CCTTCCEEECCSSCC-SCCCC--CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSS-CCSSCCC
T ss_pred C-cCCC-CCC-cCccccEEeCCCCcc-CcCCC--cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCC-CCCchhh
Confidence 4 3444 555 677777777777763 33554 56777778887777766 554 33 77777887775 4556665
Q ss_pred ccccccCCCCc-------CeEEeccCCCccccCccccCCCCccccccccCCCCCcCC
Q 040304 896 VEKGVILPTSL-------TWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSF 945 (1000)
Q Consensus 896 ~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l 945 (1000)
. ..+| +.|++++| .++.+| ..+..+++|+.|++++|+..+.+
T Consensus 198 -~-----~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 198 -V-----PVRNHHSEETEIFFRCREN-RITHIP-ENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp -C-----C--------CCEEEECCSS-CCCCCC-GGGGGSCTTEEEECCSSSCCHHH
T ss_pred -H-----HHhhhcccccceEEecCCC-cceecC-HHHhcCCCCCEEEeeCCcCCCcC
Confidence 1 1255 77777777 677777 34555777888888777544433
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=1.3e-13 Score=152.20 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=66.0
Q ss_pred EEEcCCcccccc-cccccCCCCccEeecCCCcccccc-----hhhhccC-CCcEEeccCCcCcccCChhhhcc-----cc
Q 040304 297 VLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLP-----EAITSLF-NLEILILSDCRLLLKLPSSIGNL-----VN 364 (1000)
Q Consensus 297 ~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-----~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L-----~~ 364 (1000)
++++++|.++.. |..+...++|++|+|++|.++..+ ..+..++ +|++|+|++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467899999855 665666677999999999999887 4588898 99999999998666667777776 99
Q ss_pred ccceeecCcccccc
Q 040304 365 LYHLDIDGANRLCE 378 (1000)
Q Consensus 365 L~~L~L~~~~~l~~ 378 (1000)
|++|++++|. +..
T Consensus 82 L~~L~Ls~n~-l~~ 94 (362)
T 3goz_A 82 VTSLNLSGNF-LSY 94 (362)
T ss_dssp CCEEECCSSC-GGG
T ss_pred ccEEECcCCc-CCh
Confidence 9999999994 443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=2.7e-12 Score=130.33 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=63.3
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccch--hhhccCCCcEEeccCCcCcccCChhhhccccccceeecCc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPE--AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~ 373 (1000)
+++++++|.++.+|..+. ..+++|+|++|.++.++. .|+++++|++|+|++|.+....|..|..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 477788888887777654 456788888888877742 3778888888888887754444456778888888888877
Q ss_pred ccccccccc-ccCCcccCcc
Q 040304 374 NRLCELPLG-MKELKCLRTL 392 (1000)
Q Consensus 374 ~~l~~ip~~-i~~L~~L~~L 392 (1000)
.+..+|.. +..+++|++|
T Consensus 92 -~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 92 -RLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp -CCCCCCGGGGTTCSSCCEE
T ss_pred -ccCccCHhHhcCCcCCCEE
Confidence 34444432 4444444444
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=3e-12 Score=130.89 Aligned_cols=146 Identities=24% Similarity=0.302 Sum_probs=109.9
Q ss_pred ceEEEcCCcccccccccccCCCCccEeecCCCccccc-chhhhccCCCcEEeccCCcCcccCC-hhhhccccccceeecC
Q 040304 295 LRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLLKLP-SSIGNLVNLYHLDIDG 372 (1000)
Q Consensus 295 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~ 372 (1000)
-+.++.+++.++.+|..+. ++|++|+|++|.+..+ |..|.++++|++|+|++|.+ ..+| ..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 3679999999999998765 8999999999999988 45699999999999999984 5565 4578999999999999
Q ss_pred cccccccccc-ccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEee
Q 040304 373 ANRLCELPLG-MKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWR 451 (1000)
Q Consensus 373 ~~~l~~ip~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 451 (1000)
| .+..+|.. +..+++|++|
T Consensus 98 N-~l~~l~~~~~~~l~~L~~L----------------------------------------------------------- 117 (229)
T 3e6j_A 98 N-QLTVLPSAVFDRLVHLKEL----------------------------------------------------------- 117 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEE-----------------------------------------------------------
T ss_pred C-cCCccChhHhCcchhhCeE-----------------------------------------------------------
Confidence 9 56666543 3444444443
Q ss_pred cCCCCCCcchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEE
Q 040304 452 ARRDGDSVDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTI 530 (1000)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L 530 (1000)
+++++....+|..+. .+++|++|+|++|.+....+ .+..+++|+.|++
T Consensus 118 -----------------------------~Ls~N~l~~lp~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 118 -----------------------------FMCCNKLTELPRGIE--RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp -----------------------------ECCSSCCCSCCTTGG--GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -----------------------------eccCCcccccCcccc--cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 444445555666654 37778888888887665443 4667777777777
Q ss_pred eecc
Q 040304 531 VRMS 534 (1000)
Q Consensus 531 ~~~~ 534 (1000)
++|+
T Consensus 167 ~~N~ 170 (229)
T 3e6j_A 167 FGNP 170 (229)
T ss_dssp TTSC
T ss_pred eCCC
Confidence 7765
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=2.6e-12 Score=128.13 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=86.8
Q ss_pred cccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccc
Q 040304 758 DACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLK 837 (1000)
Q Consensus 758 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~ 837 (1000)
+++|+.|++++| .+..+| .+..+++|++|++++| .+..++ +...+++|++|+++
T Consensus 43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-----------------------~l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-----------------------PISGLSNLERLRIM 96 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-----------------------GGTTCTTCCEEEEE
T ss_pred cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-----------------------hhhcCCCCCEEEeE
Confidence 356666666664 334555 4566666666666664 222221 22356777777777
Q ss_pred cCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCC
Q 040304 838 KCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPK 916 (1000)
Q Consensus 838 ~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 916 (1000)
+|......+.. ..+++|++|++++|.+.+..+. .+..+++|++|++++|..++.++. +..+++|+.|++++| .
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~~----l~~l~~L~~L~l~~n-~ 170 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNIQFD-G 170 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCGG----GGGCSSCCEEECTTB-C
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccHh----hcCCCCCCEEECCCC-C
Confidence 77644433333 6677777777777777664443 466777777777777655555542 234456666666665 4
Q ss_pred ccccCccccCCCCccccccccCC
Q 040304 917 LERLSSKGFHYLVSLESLEVFSC 939 (1000)
Q Consensus 917 l~~l~~~~~~~l~~L~~L~l~~c 939 (1000)
++.++ .+..+++|+.|++++|
T Consensus 171 i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 171 VHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCCCT--TGGGCSSCCEEEECBC
T ss_pred CcChH--HhccCCCCCEEEeeCc
Confidence 44444 4555556666666555
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=2.3e-12 Score=137.06 Aligned_cols=173 Identities=19% Similarity=0.233 Sum_probs=124.3
Q ss_pred CcccccceeeccccccccccccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceecc
Q 040304 757 DDACLRSILISSCDNLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSL 836 (1000)
Q Consensus 757 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l 836 (1000)
.+++|+.|++++| .+..++ .+..+++|+.|++++| .++.++.....++|+.|++++|. +++.-+...+++|++|++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChhhccCCCCCEEEC
Confidence 3578999999997 455665 4788999999999995 55556554445788888888754 444223457888888888
Q ss_pred ccCCCccccCCCCCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCC
Q 040304 837 KKCPGIVFFPEEGLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPK 916 (1000)
Q Consensus 837 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 916 (1000)
++|. +..++....+++|++|++++|.+.+ ++ .+..+++|+.|++++| .++.++. +..+++|+.|++++| .
T Consensus 120 ~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~L~~N-~ 189 (291)
T 1h6t_A 120 EHNG-ISDINGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDN-QISDIVP----LAGLTKLQNLYLSKN-H 189 (291)
T ss_dssp TTSC-CCCCGGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-C
T ss_pred CCCc-CCCChhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCC-ccccchh----hcCCCccCEEECCCC-c
Confidence 8886 3444444677888888888888776 32 4778888888888886 4555543 346678888888888 7
Q ss_pred ccccCccccCCCCccccccccCCCCCcCCC
Q 040304 917 LERLSSKGFHYLVSLESLEVFSCPNFTSFP 946 (1000)
Q Consensus 917 l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~ 946 (1000)
++.++ .+..+++|+.|++++| .+...|
T Consensus 190 i~~l~--~l~~l~~L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 190 ISDLR--ALAGLKNLDVLELFSQ-ECLNKP 216 (291)
T ss_dssp CCBCG--GGTTCTTCSEEEEEEE-EEECCC
T ss_pred CCCCh--hhccCCCCCEEECcCC-cccCCc
Confidence 77775 4777888888888887 344444
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=3.5e-12 Score=128.60 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=117.7
Q ss_pred cEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCcccccccccc-ccCCcccCccCceEe
Q 040304 319 RYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELPLG-MKELKCLRTLTNFIV 397 (1000)
Q Consensus 319 ~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ip~~-i~~L~~L~~L~~~~~ 397 (1000)
+.++.+++.++.+|..+ ..+|++|++++|.+....+..|+.+++|++|++++| .+..+|.. +..+++|++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L----- 81 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYL----- 81 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE-----
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEE-----
Confidence 57888999999999765 469999999999855444455889999999999999 56666654 4555555555
Q ss_pred cCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecCCCCCCcchHHHHHHHhhcCCCCCc
Q 040304 398 GKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRARRDGDSVDEVREKNILDMLKPHGNI 477 (1000)
Q Consensus 398 ~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 477 (1000)
T Consensus 82 -------------------------------------------------------------------------------- 81 (208)
T 2o6s_A 82 -------------------------------------------------------------------------------- 81 (208)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEEeecccceeecccccCCCCCCCCCCcc
Q 040304 478 KRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTIVRMSALKGIGSEINGECCSKPFPSLQ 556 (1000)
Q Consensus 478 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 556 (1000)
+++++....+|..... .+++|++|++++|.+.+..+ .+..+++|++|++++|... .++.... ..+++|+
T Consensus 82 ---~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~-----~~l~~L~ 151 (208)
T 2o6s_A 82 ---NLSTNQLQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF-----DRLTSLQ 151 (208)
T ss_dssp ---ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTT-----TTCTTCC
T ss_pred ---ECCCCcCCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHh-----ccCCCcc
Confidence 3333333334433211 36677777777776655444 3567777777777776533 3332211 2367777
Q ss_pred eeeccCcccccccCCCCCCccccccCCccceEEecCCcccccCCCCCCCCcc
Q 040304 557 TLYFEDLQVWEKWEPNTENDEHVQAFPRLQKLFIHKCPKLSGRLPNHLPSLE 608 (1000)
Q Consensus 557 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 608 (1000)
.|++++|... +.+++|++|+++. ++++|.+|.++..+.
T Consensus 152 ~L~l~~N~~~-------------~~~~~l~~L~~~~-n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 152 YIWLHDNPWD-------------CTCPGIRYLSEWI-NKHSGVVRNSAGSVA 189 (208)
T ss_dssp EEECCSCCBC-------------CCTTTTHHHHHHH-HHCTTTBBCTTSSBC
T ss_pred EEEecCCCee-------------cCCCCHHHHHHHH-HhCCceeeccCcccc
Confidence 7887777541 4567788888877 677778887665543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=5.6e-13 Score=139.43 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 291 KCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 291 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
.+..+..++++++.++.++ .+..+++|++|++++|.+..+| .++.+++|++|++++|. +..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 3556778889999999888 5888999999999999999998 68999999999999998 556666 999999999999
Q ss_pred cCccccccccc
Q 040304 371 DGANRLCELPL 381 (1000)
Q Consensus 371 ~~~~~l~~ip~ 381 (1000)
++| .+..+|.
T Consensus 93 ~~N-~l~~l~~ 102 (263)
T 1xeu_A 93 NRN-RLKNLNG 102 (263)
T ss_dssp CSS-CCSCCTT
T ss_pred CCC-ccCCcCc
Confidence 999 5666653
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=2.8e-12 Score=130.18 Aligned_cols=114 Identities=25% Similarity=0.378 Sum_probs=98.8
Q ss_pred CCchhhhhhhcCCCcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCCh
Q 040304 280 ISPMVISDLLPKCKKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPS 357 (1000)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~ 357 (1000)
....+++..|..+++|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. |.++++|++|+|++|.+....|.
T Consensus 43 ~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 43 TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 33456667889999999999999999988 78899999999999999999999977 78999999999999997666678
Q ss_pred hhhccccccceeecCcccccccccc-ccCCcccCccCc
Q 040304 358 SIGNLVNLYHLDIDGANRLCELPLG-MKELKCLRTLTN 394 (1000)
Q Consensus 358 ~i~~L~~L~~L~L~~~~~l~~ip~~-i~~L~~L~~L~~ 394 (1000)
.|..+++|++|++++| .+..+|.. +..+++|++|+.
T Consensus 123 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred HcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEe
Confidence 8999999999999999 56666654 888888888854
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=5.8e-14 Score=163.15 Aligned_cols=199 Identities=20% Similarity=0.166 Sum_probs=133.1
Q ss_pred cCCCCccEeecCCCcccccchhhhccCCCcEEeccCCc-------------CcccCChhhhcccccccee-ecCcccccc
Q 040304 313 GCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCR-------------LLLKLPSSIGNLVNLYHLD-IDGANRLCE 378 (1000)
Q Consensus 313 ~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~-------------~~~~lp~~i~~L~~L~~L~-L~~~~~l~~ 378 (1000)
..+++|+.|+|++|.++.+|++++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.| .+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH-
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc-
Confidence 56777888888888888888888888888888876653 4566778899999999998 5555 332
Q ss_pred ccccccCCcccCccCceEecCCCCCChhhccchhhhhhhhhhcCCCCCCChhhhhHHhhccccCCceeEEEeecCCCCCC
Q 040304 379 LPLGMKELKCLRTLTNFIVGKDSGCALKDLKNWKFLRGRLCISGLENVIDSQEANEALLRVKKDLEVLKLEWRARRDGDS 458 (1000)
Q Consensus 379 ip~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 458 (1000)
.|+.+.. ..+.+
T Consensus 424 ---------~L~~l~l------------------------~~n~i----------------------------------- 435 (567)
T 1dce_A 424 ---------DLRSKFL------------------------LENSV----------------------------------- 435 (567)
T ss_dssp ---------HHHHHHH------------------------HHHHH-----------------------------------
T ss_pred ---------hhhhhhh------------------------hcccc-----------------------------------
Confidence 2333310 00000
Q ss_pred cchHHHHHHHhhcCCCCCcceEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCC-CCCCcCCCCeEEEeecccce
Q 040304 459 VDEVREKNILDMLKPHGNIKRLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLP-SLGQLCSLKDLTIVRMSALK 537 (1000)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~ 537 (1000)
..+. ...|+.|+++++....+|. +. .+++|+.|+|++|.+. .+| .++.+++|+.|++++|...
T Consensus 436 -------~~l~----~~~L~~L~Ls~n~l~~lp~-~~--~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 499 (567)
T 1dce_A 436 -------LKME----YADVRVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499 (567)
T ss_dssp -------HHHH----HTTCSEEECTTSCCSSCCC-GG--GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-
T ss_pred -------cccC----ccCceEEEecCCCCCCCcC-cc--ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-
Confidence 0000 0135667777777777776 54 3788888888888877 445 6788888888888888644
Q ss_pred eecccccCCCCCCCCCCcceeeccCcccccccCCCCCC-ccccccCCccceEEecCCcccccCCCC------CCCCccEE
Q 040304 538 GIGSEINGECCSKPFPSLQTLYFEDLQVWEKWEPNTEN-DEHVQAFPRLQKLFIHKCPKLSGRLPN------HLPSLEKI 610 (1000)
Q Consensus 538 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~p~------~l~~L~~L 610 (1000)
.++ .+ ..+++|+.|++++|.. .+.. +..++.+++|+.|++++ |.+++..|. .+++|+.|
T Consensus 500 ~lp-~l------~~l~~L~~L~Ls~N~l------~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 500 NVD-GV------ANLPRLQELLLCNNRL------QQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCG-GG------TTCSSCCEEECCSSCC------CSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCc-cc------CCCCCCcEEECCCCCC------CCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCcc
Confidence 344 33 3378888888888876 3333 66778888999999988 577744442 25677766
Q ss_pred E
Q 040304 611 V 611 (1000)
Q Consensus 611 ~ 611 (1000)
+
T Consensus 566 ~ 566 (567)
T 1dce_A 566 L 566 (567)
T ss_dssp E
T ss_pred C
Confidence 4
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=1.3e-13 Score=160.35 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=58.2
Q ss_pred eEEEeeeCCCCCCcccCCCCCCceeEEEEcCCCCCCCCCCCCCcCCCCeEEEeecccceee-cccccCCCCCCCCCCcce
Q 040304 479 RLVINSYGGTRFPSWIGDPSFSNVAVLILKNCRRSTSLPSLGQLCSLKDLTIVRMSALKGI-GSEINGECCSKPFPSLQT 557 (1000)
Q Consensus 479 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~~~~~~~L~~ 557 (1000)
.|++++|....+|..+.. +++|+.|+|++|.+.+ +|.++.+++|+.|++++|...... +..+. .+++|+.
T Consensus 467 ~L~Ls~N~l~~lp~~~~~--l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~------~l~~L~~ 537 (567)
T 1dce_A 467 HLDLSHNRLRALPPALAA--LRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLV------SCPRLVL 537 (567)
T ss_dssp EEECCSSCCCCCCGGGGG--CTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGG------GCTTCCE
T ss_pred EeecCcccccccchhhhc--CCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHh------cCCCCCE
Confidence 344455555566766653 7777777777777665 567777777777777777543332 44332 3677777
Q ss_pred eeccCcccccccCCCCCCccccccCCccceEE
Q 040304 558 LYFEDLQVWEKWEPNTENDEHVQAFPRLQKLF 589 (1000)
Q Consensus 558 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 589 (1000)
|++++|....... .....+..+|+|+.|+
T Consensus 538 L~L~~N~l~~~~~---~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 538 LNLQGNSLCQEEG---IQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECTTSGGGGSSS---CTTHHHHHCTTCSEEE
T ss_pred EEecCCcCCCCcc---HHHHHHHHCcccCccC
Confidence 7777776522111 0111123467777665
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=4.5e-12 Score=122.85 Aligned_cols=100 Identities=24% Similarity=0.373 Sum_probs=84.2
Q ss_pred CCCcceEEEcCCcccc--cccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 291 KCKKLRVLSLGRYRIS--EVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 291 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
..+.|++|++++|.++ .+|..+..+++|++|+|++|.++.+ ..++.+++|++|++++|.+...+|..++.+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3478999999999998 8898889999999999999999988 679999999999999999666688878889999999
Q ss_pred eecCcccccccc--ccccCCcccCcc
Q 040304 369 DIDGANRLCELP--LGMKELKCLRTL 392 (1000)
Q Consensus 369 ~L~~~~~l~~ip--~~i~~L~~L~~L 392 (1000)
++++| .+..+| ..+..+++|++|
T Consensus 101 ~Ls~N-~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 101 NLSGN-KLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp ECBSS-SCCSSGGGGGGSSCSCCCEE
T ss_pred eccCC-ccCcchhHHHHhcCCCCCEE
Confidence 99999 566665 456666666555
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=6.2e-12 Score=138.58 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=35.5
Q ss_pred EEEcCCcccccccccccCCCCccEeecCCCcccccchh-hh-ccCCCcEEeccCCcCcccCChhhhccccccceeecCc
Q 040304 297 VLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-IT-SLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 297 ~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~ 373 (1000)
+++++++.++.+|..+. ..+++|+|++|.|+.+|.. +. ++++|++|+|++|.+....|..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 44555555555544332 2345555555555554433 33 4555555555555433322333555555555555554
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=4.9e-12 Score=139.40 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=79.8
Q ss_pred CcceEEEcCCcccccccc-ccc-CCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 293 KKLRVLSLGRYRISEVPT-SIG-CLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~-~~~-~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
+.+++|+|++|.++.++. .|. .+++|++|+|++|.|..+|. .|.++++|++|+|++|.+....+..|..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 358999999999998855 466 89999999999999999985 499999999999999985554455689999999999
Q ss_pred ecCccccccc-cccccCCcccCcc
Q 040304 370 IDGANRLCEL-PLGMKELKCLRTL 392 (1000)
Q Consensus 370 L~~~~~l~~i-p~~i~~L~~L~~L 392 (1000)
|++|. +..+ |..+..+++|++|
T Consensus 119 L~~N~-i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 119 LYNNH-IVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCc-ccEECHHHhCCcccCCEE
Confidence 99994 5444 4445555555544
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=2.2e-11 Score=123.56 Aligned_cols=108 Identities=16% Similarity=0.246 Sum_probs=94.3
Q ss_pred hhhhcCCCcceEEEcCCcccccccc-cccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccc
Q 040304 286 SDLLPKCKKLRVLSLGRYRISEVPT-SIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLV 363 (1000)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 363 (1000)
+..|..+++|++|+|++|.++.++. .|..+++|++|+|++|.++.+|.. |+++++|++|+|++|.+....|..|..++
T Consensus 50 ~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 50 TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129 (220)
T ss_dssp CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc
Confidence 3568889999999999999998854 799999999999999999998865 99999999999999997776688899999
Q ss_pred cccceeecCccccccc-cccccCCcccCccCc
Q 040304 364 NLYHLDIDGANRLCEL-PLGMKELKCLRTLTN 394 (1000)
Q Consensus 364 ~L~~L~L~~~~~l~~i-p~~i~~L~~L~~L~~ 394 (1000)
+|++|++++|. +..+ |..+..+++|+.|+.
T Consensus 130 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 130 SVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TCSEEECTTSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCc-CCEECHHHhcCCCCCCEEEe
Confidence 99999999994 5555 777899999988854
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=7e-11 Score=116.87 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=62.3
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCccc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANR 375 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~ 375 (1000)
++++++++.++.+|..+. .+|++|+|++|.++.+|..|.++++|++|+|++|.+....|..|..+++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 577888888888887654 5788888888888888877888888888888888755555556888888888888887 3
Q ss_pred ccccc
Q 040304 376 LCELP 380 (1000)
Q Consensus 376 l~~ip 380 (1000)
+..+|
T Consensus 90 l~~i~ 94 (193)
T 2wfh_A 90 LRCIP 94 (193)
T ss_dssp CCBCC
T ss_pred cCEeC
Confidence 44444
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=5.8e-11 Score=117.58 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=72.7
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccchh--hhccCCCcEEeccCCcCcccCChhhhccccccceeecCc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA--ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~ 373 (1000)
+++++++|.++.+|..+.. +|++|+|++|.+..+|.. ++++++|++|+|++|.+.+..|..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6889999999999887654 899999999999988864 889999999999999876766888999999999999998
Q ss_pred ccccccccc-ccCCcccCc
Q 040304 374 NRLCELPLG-MKELKCLRT 391 (1000)
Q Consensus 374 ~~l~~ip~~-i~~L~~L~~ 391 (1000)
.+..+|.. +..+++|++
T Consensus 89 -~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp -CCCEECSSSSTTCTTCCE
T ss_pred -cCCccCHHHhcCCCCCCE
Confidence 44444332 444433333
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.8e-11 Score=133.13 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=82.1
Q ss_pred CCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcC-eEEeccCCCccccCccccCCCC
Q 040304 851 STNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLT-WIRISDFPKLERLSSKGFHYLV 929 (1000)
Q Consensus 851 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~~l~ 929 (1000)
+++|+.|+|++|.+.. ++...|.++++|++|++.++ ++.++. .+|..+++|+ .+++.+ .++.++...|.+++
T Consensus 225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~--~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQ--RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECT--TTTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehH--HHhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence 6899999999988765 77778999999999999985 777775 5567788898 999988 78888888899999
Q ss_pred ccccccccCCCCCcCCCCCCC--CCCcceEe
Q 040304 930 SLESLEVFSCPNFTSFPEAGF--PSSLLSLK 958 (1000)
Q Consensus 930 ~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~ 958 (1000)
+|+.|+++++ .++.++...+ +++|+++.
T Consensus 298 ~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 298 NLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred cCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 9999999777 7888887555 56777664
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=3.1e-11 Score=114.20 Aligned_cols=105 Identities=24% Similarity=0.248 Sum_probs=82.9
Q ss_pred hhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccc-cchhhhccCCCcEEeccCCcCcccCC--hhhhcc
Q 040304 286 SDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKC-LPEAITSLFNLEILILSDCRLLLKLP--SSIGNL 362 (1000)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L 362 (1000)
+..+..+++|++|++++|.++.+ ..+..+++|++|+|++|.+.. +|..++++++|++|++++|.+ ..+| ..++.+
T Consensus 35 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i-~~~~~~~~~~~l 112 (149)
T 2je0_A 35 EGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI-KDLSTIEPLKKL 112 (149)
T ss_dssp CSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC-CSHHHHGGGGGC
T ss_pred HHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC-CChHHHHHHhhC
Confidence 44567788888888888888877 668888888899998888887 777777888889999988874 4443 668888
Q ss_pred ccccceeecCccccccccc----cccCCcccCccC
Q 040304 363 VNLYHLDIDGANRLCELPL----GMKELKCLRTLT 393 (1000)
Q Consensus 363 ~~L~~L~L~~~~~l~~ip~----~i~~L~~L~~L~ 393 (1000)
++|++|++++| .+..+|. .+..+++|+.|+
T Consensus 113 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 113 ENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence 88888888888 5666665 577788888774
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=4e-11 Score=118.61 Aligned_cols=101 Identities=27% Similarity=0.410 Sum_probs=88.2
Q ss_pred CcceEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceeec
Q 040304 293 KKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDID 371 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~ 371 (1000)
+.|++|+|++|.++.+|..|..+++|++|+|++|.|+.++.. |.++++|++|+|++|.+....|..|..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 478999999999999999999999999999999999998854 9999999999999999666566679999999999999
Q ss_pred Ccccccccccc-ccCCcccCccCc
Q 040304 372 GANRLCELPLG-MKELKCLRTLTN 394 (1000)
Q Consensus 372 ~~~~l~~ip~~-i~~L~~L~~L~~ 394 (1000)
+| .+..+|.. +..+++|+.|+.
T Consensus 111 ~N-~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 111 GN-DISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp SS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CC-CCCeeChhhhhcCccccEEEe
Confidence 99 57777765 788888888854
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=2e-11 Score=119.07 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=72.4
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChh-hhccccccc
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSS-IGNLVNLYH 367 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~ 367 (1000)
+..+..|++|++++|.++.+|......++|++|+|++|.++.+ ..++.+++|++|++++|.+ ..+|.. ++.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCE
Confidence 5567788888888888888765333334888888888888887 5688888888888888874 445544 488888888
Q ss_pred eeecCccccccccc--cccCCcccCcc
Q 040304 368 LDIDGANRLCELPL--GMKELKCLRTL 392 (1000)
Q Consensus 368 L~L~~~~~l~~ip~--~i~~L~~L~~L 392 (1000)
|++++| .++.+|. .+..+++|++|
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEE
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEE
Confidence 888888 4566664 34444444444
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=2.6e-11 Score=114.73 Aligned_cols=101 Identities=23% Similarity=0.288 Sum_probs=90.2
Q ss_pred CCcceEEEcCCcccc--cccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhcccccccee
Q 040304 292 CKKLRVLSLGRYRIS--EVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLD 369 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 369 (1000)
.++|+.|++++|.++ .+|..+..+++|++|++++|.+..+ ..++++++|++|++++|.+...+|..++.+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 468999999999998 8899999999999999999999998 7799999999999999996666888888899999999
Q ss_pred ecCcccccccc--ccccCCcccCccCc
Q 040304 370 IDGANRLCELP--LGMKELKCLRTLTN 394 (1000)
Q Consensus 370 L~~~~~l~~ip--~~i~~L~~L~~L~~ 394 (1000)
+++| .+..+| ..++.+++|++|+.
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeC
Confidence 9999 577765 77899999998843
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=4.4e-12 Score=152.37 Aligned_cols=107 Identities=25% Similarity=0.278 Sum_probs=87.8
Q ss_pred hhhhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccc
Q 040304 284 VISDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLV 363 (1000)
Q Consensus 284 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 363 (1000)
++++.|..++.|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|+.|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 5677788889999999999999988888888999999999999999999889999999999999988 448888899999
Q ss_pred cccceeecCccccccccccccCCcccCcc
Q 040304 364 NLYHLDIDGANRLCELPLGMKELKCLRTL 392 (1000)
Q Consensus 364 ~L~~L~L~~~~~l~~ip~~i~~L~~L~~L 392 (1000)
+|++|+|++| .++.+|..|++|++|++|
T Consensus 294 ~L~~L~L~~N-~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp TCSEEECCSS-CCCCCCSSTTSCTTCCCE
T ss_pred CCCEEECCCC-CCCccChhhhcCCCccEE
Confidence 9999999988 677888888888777777
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=4e-11 Score=144.00 Aligned_cols=95 Identities=28% Similarity=0.399 Sum_probs=75.2
Q ss_pred hcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccce
Q 040304 289 LPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHL 368 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 368 (1000)
+..+++|++|+|++|.++.+|..|+.+++|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|+.|++|++|
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEE
Confidence 34788888888888888888888888888888888888888888888888888888888887 56778778888888888
Q ss_pred eecCcccccccccccc
Q 040304 369 DIDGANRLCELPLGMK 384 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~i~ 384 (1000)
+|++|...+.+|..+.
T Consensus 322 ~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILT 337 (727)
T ss_dssp ECTTSCCCSHHHHHHH
T ss_pred eCCCCccCCCChHHHh
Confidence 8888854445555443
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=4.6e-11 Score=115.67 Aligned_cols=109 Identities=27% Similarity=0.231 Sum_probs=93.0
Q ss_pred hhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccc-cchhhhccCCCcEEeccCCcCcccCC--hhhhcc
Q 040304 286 SDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKC-LPEAITSLFNLEILILSDCRLLLKLP--SSIGNL 362 (1000)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L 362 (1000)
+..+..+++|++|++++|.++.+ ..+..+++|++|+|++|.+.. +|..++++++|++|++++|. +..+| ..++.+
T Consensus 42 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l 119 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKL 119 (168)
T ss_dssp SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSC
T ss_pred HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcC
Confidence 44567788999999999999988 778999999999999999998 77778889999999999998 55555 678999
Q ss_pred ccccceeecCccccccccc----cccCCcccCccCceEe
Q 040304 363 VNLYHLDIDGANRLCELPL----GMKELKCLRTLTNFIV 397 (1000)
Q Consensus 363 ~~L~~L~L~~~~~l~~ip~----~i~~L~~L~~L~~~~~ 397 (1000)
++|++|++++| .+..+|. .+..+++|++|+...+
T Consensus 120 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 120 ECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999999 5777776 6888999999965443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=1.1e-10 Score=113.84 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=90.3
Q ss_pred CCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCCh--hhhccccccce
Q 040304 292 CKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPS--SIGNLVNLYHL 368 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L 368 (1000)
.++|++|++++|.++.+ ..|..+++|++|+|++|.++.+|.. ++.+++|++|++++|. ++.+|. .++.+++|++|
T Consensus 41 ~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 44999999999999988 6799999999999999999999876 5999999999999998 577886 79999999999
Q ss_pred eecCcccccccccc----ccCCcccCccCceE
Q 040304 369 DIDGANRLCELPLG----MKELKCLRTLTNFI 396 (1000)
Q Consensus 369 ~L~~~~~l~~ip~~----i~~L~~L~~L~~~~ 396 (1000)
++++| .+..+|.. +..+++|+.|+...
T Consensus 119 ~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 119 CILRN-PVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECCSS-GGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred EecCC-CCCCcHhHHHHHHHHCCccceeCCCc
Confidence 99999 57788875 88899999996543
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=6.8e-11 Score=117.04 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=81.1
Q ss_pred cceEEEcCCccccccccc--ccCCCCccEeecCCCccccc-chhhhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 294 KLRVLSLGRYRISEVPTS--IGCLKHLRYLNFSESWIKCL-PEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 294 ~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
.|++|++++|.++.++.. |..+++|++|+|++|.++.+ |..|+++++|++|+|++|.+.+..|..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788889999988888653 88888999999999988877 556888999999999988866666666888889999999
Q ss_pred cCccccccccccccCCcccCccCc
Q 040304 371 DGANRLCELPLGMKELKCLRTLTN 394 (1000)
Q Consensus 371 ~~~~~l~~ip~~i~~L~~L~~L~~ 394 (1000)
++|...+..|..+..+++|++|+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEe
Confidence 888544455677888888888754
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=4.5e-12 Score=126.46 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=48.7
Q ss_pred cccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCcccccccc
Q 040304 305 ISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANRLCELP 380 (1000)
Q Consensus 305 l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~ip 380 (1000)
++.+|..+..+++|++|+|++|.+..+| .++++++|++|++++|. +..+|..+..+++|++|++++| .+..+|
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~ 109 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS 109 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC
Confidence 4445556777777777777777777776 67777777777777766 4466666666677777777776 444444
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=6.6e-10 Score=108.46 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=57.8
Q ss_pred ceEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceeecCc
Q 040304 295 LRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 295 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~ 373 (1000)
.+.++++++.++.+|..+. ++|++|++++|.+..+|.. ++++++|++|++++|.+....+..++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3677778888777775543 6788888888887777754 677888888888887744333344677888888888777
Q ss_pred ccccccc
Q 040304 374 NRLCELP 380 (1000)
Q Consensus 374 ~~l~~ip 380 (1000)
.+..+|
T Consensus 87 -~l~~~~ 92 (177)
T 2o6r_A 87 -KLQSLP 92 (177)
T ss_dssp -CCCCCC
T ss_pred -CccccC
Confidence 344444
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=5.3e-10 Score=109.15 Aligned_cols=101 Identities=25% Similarity=0.365 Sum_probs=73.4
Q ss_pred CcceEEEcCCcccccccc-cccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEVPT-SIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.|++|++++|.++.+|. .|..+++|++|+|++|.++.+|.. ++++++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 467888888888877754 467788888888888888877765 678888888888888744444444677888888888
Q ss_pred cCcccccccccc-ccCCcccCccCc
Q 040304 371 DGANRLCELPLG-MKELKCLRTLTN 394 (1000)
Q Consensus 371 ~~~~~l~~ip~~-i~~L~~L~~L~~ 394 (1000)
++| .+..+|.. +..+++|++|+.
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred cCC-cceEeCHHHhcCCcccCEEEe
Confidence 887 56666665 466777777644
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1.6e-09 Score=117.58 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=58.2
Q ss_pred CCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchh-hhc--------cCCCcEEeccCCcCcccCC-hhhhc
Q 040304 292 CKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEA-ITS--------LFNLEILILSDCRLLLKLP-SSIGN 361 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~--------L~~L~~L~L~~~~~~~~lp-~~i~~ 361 (1000)
+++|++|||++|++......-+.++.++++.+..+ .+|+. |.+ +++|+.|+|.+ . +..++ ..|..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhc
Confidence 78899999999999822111122233555555555 34433 666 78888888877 4 44454 34777
Q ss_pred cccccceeecCcccccccccc-ccCCcccCcc
Q 040304 362 LVNLYHLDIDGANRLCELPLG-MKELKCLRTL 392 (1000)
Q Consensus 362 L~~L~~L~L~~~~~l~~ip~~-i~~L~~L~~L 392 (1000)
+++|+.|++++| .+..++.. |..+.++..+
T Consensus 123 ~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 123 CDNLKICQIRKK-TAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp CTTCCEEEBCCS-SCCEECTTSSCTTTCEEEE
T ss_pred CcccceEEcCCC-CccccchhhhcCCCceEEe
Confidence 888888888777 44455443 5555444444
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=5.9e-10 Score=108.03 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=47.4
Q ss_pred CcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCCh-hhhcccccccee
Q 040304 293 KKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPS-SIGNLVNLYHLD 369 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 369 (1000)
+.|++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|.. |.++++|++|+|++|.+ ..+|. .|..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEE
Confidence 4566666666666655 44556666666666666666666554 45666666666666653 33333 356666666666
Q ss_pred ecCc
Q 040304 370 IDGA 373 (1000)
Q Consensus 370 L~~~ 373 (1000)
+++|
T Consensus 112 L~~N 115 (174)
T 2r9u_A 112 LYNN 115 (174)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 6666
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=6.8e-10 Score=107.25 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=46.2
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChhhhccccccceeecCcc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 374 (1000)
+++++++|.++.+|..+. ++|++|+|++|.|+.++ ..|+++++|++|+|++|.+....|..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N- 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN- 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence 445555555555554442 45555555555555552 23555555555555555533222223455555555555555
Q ss_pred cccccccc-ccCCcccCcc
Q 040304 375 RLCELPLG-MKELKCLRTL 392 (1000)
Q Consensus 375 ~l~~ip~~-i~~L~~L~~L 392 (1000)
.+..+|.. +..+++|++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEE
T ss_pred ccCEeCHHHhcCCCCCCEE
Confidence 34444432 4455555554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=8.2e-12 Score=124.60 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=91.3
Q ss_pred hhhhcCCCcceEEEcCCcccccccccccCCCCccEeecCCCcccccchhhhccCCCcEEeccCCcCcccCChhhhccccc
Q 040304 286 SDLLPKCKKLRVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLPEAITSLFNLEILILSDCRLLLKLPSSIGNLVNL 365 (1000)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 365 (1000)
+..+..+++|++|++++|.++.+| .+..+++|++|+|++|.+..+|..+..+++|++|++++|. +..+| .++.+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCC
Confidence 447888999999999999999998 8999999999999999999999989999999999999998 45566 59999999
Q ss_pred cceeecCccccccccc--cccCCcccCccC
Q 040304 366 YHLDIDGANRLCELPL--GMKELKCLRTLT 393 (1000)
Q Consensus 366 ~~L~L~~~~~l~~ip~--~i~~L~~L~~L~ 393 (1000)
++|++++| .+..+|. .+..+++|++|+
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEE
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEE
Confidence 99999999 5776664 577888888774
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=6.3e-10 Score=107.83 Aligned_cols=98 Identities=23% Similarity=0.395 Sum_probs=84.3
Q ss_pred eEEEcCCcccccccccccCCCCccEeecCCCcccccc-hhhhccCCCcEEeccCCcCcccCChh-hhccccccceeecCc
Q 040304 296 RVLSLGRYRISEVPTSIGCLKHLRYLNFSESWIKCLP-EAITSLFNLEILILSDCRLLLKLPSS-IGNLVNLYHLDIDGA 373 (1000)
Q Consensus 296 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~ 373 (1000)
+.+++++|.++.+|..+. .+|++|+|++|.|..++ ..|+++++|++|+|++|. +..+|.. |..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 789999999999998775 89999999999999985 569999999999999998 4556654 789999999999999
Q ss_pred ccccccccc-ccCCcccCccCceEe
Q 040304 374 NRLCELPLG-MKELKCLRTLTNFIV 397 (1000)
Q Consensus 374 ~~l~~ip~~-i~~L~~L~~L~~~~~ 397 (1000)
.+..+|.. +..+++|++|+...+
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred -ccceeCHHHhccccCCCEEEeCCC
Confidence 67788876 888999998865433
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.95 E-value=4.1e-08 Score=108.68 Aligned_cols=249 Identities=11% Similarity=0.181 Sum_probs=157.7
Q ss_pred CcceeEeccCCCccccccCCCCCccccEEEEecccCceec-cccccCccccceEeecCCCchhhhhhhcCCcccccceee
Q 040304 688 DLESLSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVL-TSECQLPVAIEALTISNCSNLESIAERFYDDACLRSILI 766 (1000)
Q Consensus 688 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l 766 (1000)
+|+.+.+.++ ++.+......-.+|+.+.+.. .++.+ ...|..+++|+.+++.+ +.+..++...+..++|+.+.+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEe
Confidence 3555555443 333332212223577776654 34433 34677777788887776 345556555555577777777
Q ss_pred cccccccccc-ccccCCCCcceEeecCCCCccccCCCCCCCCCceEeeccccCccCCCCCCCccccceeccccCCCcccc
Q 040304 767 SSCDNLKSLP-IGLNNLSHLHRISIEGCHNLVSLPEDALPSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFF 845 (1000)
Q Consensus 767 ~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~ 845 (1000)
.. .++.++ ..|.++++|+.+++.+ +++.++...|. + .+|+.+.+.++ +..+
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~---------------------~-~~L~~i~lp~~--i~~I 262 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFR---------------------E-SGITTVKLPNG--VTNI 262 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTT---------------------T-CCCSEEEEETT--CCEE
T ss_pred CC--chheehhhHhhCCCCCCEEecCC--CccCccccccc---------------------c-CCccEEEeCCC--ccEE
Confidence 64 255554 4566777777777765 34545443332 2 45666666332 4455
Q ss_pred CCC--CCCCCccEEEeccccCc----ccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccc
Q 040304 846 PEE--GLSTNLTYLEISGANIY----KPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLER 919 (1000)
Q Consensus 846 ~~~--~~l~~L~~L~L~~n~~~----~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 919 (1000)
+.. ..+++|+.+++.++... ..++...|.++++|+.+.+.+ .++.++. .+|..+++|+.+.+.+ +++.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~--~aF~~c~~L~~l~lp~--~l~~ 336 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ--GLLGGNRKVTQLTIPA--NVTQ 336 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT--TTTTTCCSCCEEEECT--TCCE
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh--hhhcCCCCccEEEECc--cccE
Confidence 444 55778888888777654 136666889999999999985 3777764 4566778999999955 4788
Q ss_pred cCccccCCCCccccccccCCCCCcCCCCCCC---CCCcceEeecCCchhhHhhhccCCCCCcccc
Q 040304 920 LSSKGFHYLVSLESLEVFSCPNFTSFPEAGF---PSSLLSLKIIGCPLLGNKCRKDKGQEWPKIA 981 (1000)
Q Consensus 920 l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~ 981 (1000)
+....|.++ +|+.+++.++ .+..++...+ +.+++.|.+-... ...|.... .|....
T Consensus 337 I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a~--~W~~f~ 395 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNAN--GWRDFT 395 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHST--TGGGGG
T ss_pred EcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhhhcc--chhhhh
Confidence 887889999 9999999988 5666665433 4678899987543 44555443 386653
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=1.9e-09 Score=103.99 Aligned_cols=82 Identities=24% Similarity=0.301 Sum_probs=73.5
Q ss_pred CcceEEEcCCcccccc-cccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcCcccCChhhhccccccceee
Q 040304 293 KKLRVLSLGRYRISEV-PTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDI 370 (1000)
Q Consensus 293 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L 370 (1000)
+.|++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|.. |.++++|++|+|++|.+....|..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6899999999999988 67799999999999999999999976 799999999999999855444445999999999999
Q ss_pred cCcc
Q 040304 371 DGAN 374 (1000)
Q Consensus 371 ~~~~ 374 (1000)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9994
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=1.2e-08 Score=111.63 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=37.1
Q ss_pred EcCCc-ccccccccccCCCCccEeecCC-Ccccccch-hhhccCCCcEEeccCCcCcccCChhhhccccccceeecCccc
Q 040304 299 SLGRY-RISEVPTSIGCLKHLRYLNFSE-SWIKCLPE-AITSLFNLEILILSDCRLLLKLPSSIGNLVNLYHLDIDGANR 375 (1000)
Q Consensus 299 ~L~~n-~l~~lp~~~~~l~~L~~L~Ls~-n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~ 375 (1000)
+++++ .++.+|. |..+.+|++|+|++ |.+..+|. .|++|++|++|+|++|.+.+..|..|++|++|++|+|++| .
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-c
Confidence 44444 4444444 44444444555543 44444442 2444444555555444433333334444444555554444 3
Q ss_pred cccccc
Q 040304 376 LCELPL 381 (1000)
Q Consensus 376 l~~ip~ 381 (1000)
+..+|.
T Consensus 92 l~~~~~ 97 (347)
T 2ifg_A 92 LESLSW 97 (347)
T ss_dssp CSCCCS
T ss_pred cceeCH
Confidence 344443
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=4.3e-07 Score=100.52 Aligned_cols=209 Identities=15% Similarity=0.186 Sum_probs=140.6
Q ss_pred ccceEeecCCCchhhhhhhcCCcccccceeecccccccccc-ccccCCCCcceEeecCCCCccccCCCCCC-CCCceEee
Q 040304 736 AIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSLP-IGLNNLSHLHRISIEGCHNLVSLPEDALP-SSVVDVSI 813 (1000)
Q Consensus 736 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l 813 (1000)
+|+.+.+... +..++...+.-.+|+.+.+.. .++.++ ..|.+|++|+.+++.+ +.++.++...+. .+|+.+.+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEe
Confidence 4555555432 444433222224566666664 444553 4566777777777766 456666655443 56666666
Q ss_pred ccccCccC--CCCCCCccccceeccccCCCccccCCC-CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCc
Q 040304 814 EECDKLKG--PLPTGKISSLQELSLKKCPGIVFFPEE-GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDA 890 (1000)
Q Consensus 814 ~~~~~l~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l 890 (1000)
... ++. .-.+.++++|+.+++..+ +..++.. -.-.+|+.+.|. +.+. .++..+|.++++|+.+.+.++...
T Consensus 211 p~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 211 PVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCC
T ss_pred CCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCcccc
Confidence 532 222 122347889999999864 5666554 223789999994 3443 476778999999999999885321
Q ss_pred ----cccccccccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCCC--CCCcceEeecCC
Q 040304 891 ----ASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGF--PSSLLSLKIIGC 962 (1000)
Q Consensus 891 ----~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~l~~c 962 (1000)
..++. ..|..+++|+.+.+.+ .++.++...|.++++|+.+.+.++ ++.++...+ + +|+.++++++
T Consensus 285 ~~~~~~I~~--~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 285 DDPEAMIHP--YCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CCTTCEECT--TTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCcccEECH--HHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 23443 4566789999999984 588898889999999999999665 788876544 5 9999999987
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.64 E-value=1.6e-06 Score=96.45 Aligned_cols=300 Identities=13% Similarity=0.098 Sum_probs=170.4
Q ss_pred cCCCCCcceEEEEcCC-CCcccccccCCCCcceEEecC-CccccccccccccccceeEEecCCCCCccCCcceeEeccCC
Q 040304 621 SLPSVPALCKLKIDGC-KRLVCDGLSESKSLNKMTLWN-ISEFENWSSQKFQNVEHLEIVGCEGSSTCLDLESLSVFRCP 698 (1000)
Q Consensus 621 ~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~L~~L~l~~~~ 698 (1000)
.|..+.+|+.+.+... ..+...+|.++++|+.+.+.+ ...+....+..+.+|+.+.+ ...
T Consensus 66 AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~-----------------p~~- 127 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILL-----------------PLM- 127 (394)
T ss_dssp TTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCC-----------------CTT-
T ss_pred HhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcc-----------------cCc-
Confidence 5666778888888543 334445677777777777743 22333333333444433332 211
Q ss_pred CccccccC-CCCCccccEEEEecccCcee-ccccccCccccceEeecCCCchhhh-hhhcCCcccccceeeccccccccc
Q 040304 699 LLTCLWTG-GWLPVTLKRLEIWCCYNFKV-LTSECQLPVAIEALTISNCSNLESI-AERFYDDACLRSILISSCDNLKSL 775 (1000)
Q Consensus 699 ~~~~~~~~-~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~ 775 (1000)
+..+... +... .+....+ ...... -...|..+++|+.+.+.+. +..+ ...|..+++|+.+.+..+ ++.+
T Consensus 128 -l~~i~~~aF~~~-~~~~~~~--~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I 199 (394)
T 4fs7_A 128 -LKSIGVEAFKGC-DFKEITI--PEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKII 199 (394)
T ss_dssp -CCEECTTTTTTC-CCSEEEC--CTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEE
T ss_pred -eeeecceeeecc-ccccccc--CccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEe
Confidence 1111000 0000 1111111 111111 2335666777777777542 2233 234555677777777653 4444
Q ss_pred c-ccccCCCCcceEeecCCCCccccCCCCC-CCCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCC--CCC
Q 040304 776 P-IGLNNLSHLHRISIEGCHNLVSLPEDAL-PSSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE--GLS 851 (1000)
Q Consensus 776 ~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~l 851 (1000)
+ ..+.+++.|+.+.+... ...+....+ ..+|+.+.+......-+...+..+..|+.+.+..+. ..+... ..+
T Consensus 200 ~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~ 275 (394)
T 4fs7_A 200 RDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNC 275 (394)
T ss_dssp CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTC
T ss_pred CchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc--ceeeccccccc
Confidence 3 35666777777766552 222222222 246666666432211111223467788888886652 333332 556
Q ss_pred CCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccCCCCcc
Q 040304 852 TNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFHYLVSL 931 (1000)
Q Consensus 852 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L 931 (1000)
..++.+....+. ++...|..+.+|+.+.+.++ ++.++. .+|..+++|+++++.+ .++.+....|.++++|
T Consensus 276 ~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~--i~~I~~--~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 276 SGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS--VKFIGE--EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT--CCEECT--TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTC
T ss_pred cccceeccCcee----eccccccccccccccccccc--cceech--hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCC
Confidence 778887776543 44456888999999999763 666654 4556778899998854 4778887889999999
Q ss_pred ccccccCCCCCcCCCCCCC--CCCcceEeecCC
Q 040304 932 ESLEVFSCPNFTSFPEAGF--PSSLLSLKIIGC 962 (1000)
Q Consensus 932 ~~L~l~~c~~l~~l~~~~~--~~sL~~L~l~~c 962 (1000)
+.+++..+ ++.++...+ +++|+++++...
T Consensus 346 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 346 SNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 99999765 778876554 688999988643
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=5.5e-08 Score=106.42 Aligned_cols=84 Identities=24% Similarity=0.248 Sum_probs=72.9
Q ss_pred hcCCCcceEEEcCC-ccccccc-ccccCCCCccEeecCCCcccccch-hhhccCCCcEEeccCCcCcccCChh-hhcccc
Q 040304 289 LPKCKKLRVLSLGR-YRISEVP-TSIGCLKHLRYLNFSESWIKCLPE-AITSLFNLEILILSDCRLLLKLPSS-IGNLVN 364 (1000)
Q Consensus 289 ~~~l~~L~~L~L~~-n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~ 364 (1000)
+..+++|++|+|++ |.++.+| ..|..+++|++|+|++|.|+.+|. .|++|++|++|+|++|.+ ..+|.. +..+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHHHcccCC-
Confidence 78889999999996 9999986 679999999999999999999876 489999999999999984 556654 55555
Q ss_pred ccceeecCcc
Q 040304 365 LYHLDIDGAN 374 (1000)
Q Consensus 365 L~~L~L~~~~ 374 (1000)
|+.|+|.+|.
T Consensus 105 L~~l~l~~N~ 114 (347)
T 2ifg_A 105 LQELVLSGNP 114 (347)
T ss_dssp CCEEECCSSC
T ss_pred ceEEEeeCCC
Confidence 9999999983
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=2.4e-06 Score=94.94 Aligned_cols=274 Identities=18% Similarity=0.143 Sum_probs=133.0
Q ss_pred cCCCCCcceEEEEcCC-CCcccccccCCCCcceEEecCCccccccccccccccceeEEe--------cCCCCCccCCcce
Q 040304 621 SLPSVPALCKLKIDGC-KRLVCDGLSESKSLNKMTLWNISEFENWSSQKFQNVEHLEIV--------GCEGSSTCLDLES 691 (1000)
Q Consensus 621 ~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~--------~~~~~~~~~~L~~ 691 (1000)
.|..+++|+.+++..+ ..+....+..+.+|+.+.+.. .+..+....+.+.....+. +...+..|++|+.
T Consensus 89 aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~ 166 (394)
T 4fs7_A 89 AFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPL--MLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEY 166 (394)
T ss_dssp TTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCE
T ss_pred HhhCCCCCcEEEeCCCceEccchhhcccccchhhcccC--ceeeecceeeecccccccccCccccccchhhhcccCCCcE
Confidence 5677899999999654 334445677778887766543 1222222222221111111 1112444555555
Q ss_pred eEeccCCCccccccCCCCCccccEEEEecccCceeccccccCccccceEeecCCCchhhh-hhhcCCcccccceeecccc
Q 040304 692 LSVFRCPLLTCLWTGGWLPVTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESI-AERFYDDACLRSILISSCD 770 (1000)
Q Consensus 692 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~~~ 770 (1000)
+.+.+.. ..+ -...+..+++|+.+++... +..+ ...+..+..|+.+.+...
T Consensus 167 i~l~~~~--~~I-----------------------~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~- 218 (394)
T 4fs7_A 167 VSLPDSM--ETL-----------------------HNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS- 218 (394)
T ss_dssp EECCTTC--CEE-----------------------CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT-
T ss_pred EecCCcc--cee-----------------------ccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC-
Confidence 5554321 111 1223334444444444321 2222 122233344444443331
Q ss_pred ccccccccccCCCCcceEeecCCCCccccCCCCCC--CCCceEeeccccCccCCCCCCCccccceeccccCCCccccCCC
Q 040304 771 NLKSLPIGLNNLSHLHRISIEGCHNLVSLPEDALP--SSVVDVSIEECDKLKGPLPTGKISSLQELSLKKCPGIVFFPEE 848 (1000)
Q Consensus 771 ~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 848 (1000)
...+........+|+.+.+.. .+..+....+. ..++.+.+.....--+...+..+..++.+..... .++..
T Consensus 219 -~~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~ 291 (394)
T 4fs7_A 219 -LYYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV----IVPEK 291 (394)
T ss_dssp -CCEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS----EECTT
T ss_pred -ceEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceeeccccccccccceeccCce----eeccc
Confidence 222222233334455544432 22222222221 2344444432211111122234555655554432 12222
Q ss_pred --CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCCCccccCccccC
Q 040304 849 --GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFPKLERLSSKGFH 926 (1000)
Q Consensus 849 --~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 926 (1000)
..+.+|+.+.+..+ ...+...+|.++.+|+.+++.++ ++.++. .+|..+++|+++.+... ++.+....|.
T Consensus 292 ~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~--~aF~~c~~L~~i~lp~~--l~~I~~~aF~ 363 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK--RSFRGCTSLSNINFPLS--LRKIGANAFQ 363 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT--TTTTTCTTCCEECCCTT--CCEECTTTBT
T ss_pred cccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH--HhccCCCCCCEEEECcc--ccEehHHHhh
Confidence 45677777777654 23355557788888888888643 555553 44556677888877543 6777777788
Q ss_pred CCCccccccccCC
Q 040304 927 YLVSLESLEVFSC 939 (1000)
Q Consensus 927 ~l~~L~~L~l~~c 939 (1000)
++++|+.+++.++
T Consensus 364 ~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 364 GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEEEEEGG
T ss_pred CCCCCCEEEECCC
Confidence 8888888887654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=5.2e-07 Score=85.20 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=56.5
Q ss_pred CCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccC----CCCcCeEEeccCCCccccCccccCC
Q 040304 852 TNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVIL----PTSLTWIRISDFPKLERLSSKGFHY 927 (1000)
Q Consensus 852 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~l~~~~~~~ 927 (1000)
.+|++||+++|.++..... .+.++++|+.|++++|..++.-.- ..+.. .++|+.|++++|+++++-.-..+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCL--ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHH--HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHH--HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 4688888888886663333 467788888888888877764221 00111 1357777777777676633234455
Q ss_pred CCccccccccCCCCCcC
Q 040304 928 LVSLESLEVFSCPNFTS 944 (1000)
Q Consensus 928 l~~L~~L~l~~c~~l~~ 944 (1000)
+++|++|++++|+.+++
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 66666666666666654
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.17 E-value=8.2e-05 Score=82.52 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=29.1
Q ss_pred cccCccccceEeecCCCchhhhhhhcCCcccccceeeccccccccc-cccccCCCCcceEeecC
Q 040304 730 ECQLPVAIEALTISNCSNLESIAERFYDDACLRSILISSCDNLKSL-PIGLNNLSHLHRISIEG 792 (1000)
Q Consensus 730 ~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~ 792 (1000)
.+..+.+|+.+.+.+ .+..+....+....|+.+.+... +..+ ...+..+..+.......
T Consensus 155 ~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 155 MFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECC
T ss_pred ceecccccccccccc--eeeEeccccccccceeEEEECCc--ccccccchhhhccccceecccc
Confidence 445556666666643 23334333333356666666542 2222 23455566666655543
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=3.3e-07 Score=100.38 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCcceEEEcCCcccccc-----ccccc-CCCCccEeecCCCccccc--chhhhccCCCcEEeccCCcCcccCChhhh---
Q 040304 292 CKKLRVLSLGRYRISEV-----PTSIG-CLKHLRYLNFSESWIKCL--PEAITSLFNLEILILSDCRLLLKLPSSIG--- 360 (1000)
Q Consensus 292 l~~L~~L~L~~n~l~~l-----p~~~~-~l~~L~~L~Ls~n~i~~l--p~~i~~L~~L~~L~L~~~~~~~~lp~~i~--- 360 (1000)
++.|++|+|++|.++.. ...+. ...+|++|+|++|.+... ..-...+.+|++|+|++|.+...-...++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35688999999988743 22233 336899999999987642 22244567889999999874332222232
Q ss_pred --ccccccceeecCcccccc-----ccccccCCcccCcc
Q 040304 361 --NLVNLYHLDIDGANRLCE-----LPLGMKELKCLRTL 392 (1000)
Q Consensus 361 --~L~~L~~L~L~~~~~l~~-----ip~~i~~L~~L~~L 392 (1000)
..++|++|+|++|. ++. ++..+..+++|++|
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L 188 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHL 188 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEE
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEE
Confidence 34678999998883 432 33334555556555
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.08 E-value=0.00049 Score=76.19 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=62.2
Q ss_pred CccccceeccccCCCccccCCC--CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCC
Q 040304 827 KISSLQELSLKKCPGIVFFPEE--GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPT 904 (1000)
Q Consensus 827 ~l~~L~~L~l~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 904 (1000)
++..|+.+.+.+. ...+... ..+++|+.+.+.. .+ ..++...|.++.+|+.+.+..+ ++.+.. .+|..++
T Consensus 263 ~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~-~i-~~I~~~aF~~c~~L~~i~lp~~--v~~I~~--~aF~~C~ 334 (394)
T 4gt6_A 263 SCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS-RI-TELPESVFAGCISLKSIDIPEG--ITQILD--DAFAGCE 334 (394)
T ss_dssp TCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT-TC-CEECTTTTTTCTTCCEEECCTT--CCEECT--TTTTTCT
T ss_pred ecccccEEecccc--cceecCcccccccccccccCCC-cc-cccCceeecCCCCcCEEEeCCc--ccEehH--hHhhCCC
Confidence 4555555555432 2223222 3456666666642 22 2355556777777777777642 555543 3445566
Q ss_pred CcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCCCCCCcceEeec
Q 040304 905 SLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGFPSSLLSLKII 960 (1000)
Q Consensus 905 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~l~ 960 (1000)
+|+++.+-. .++.+....|.++++|+.+++.++.. .+..-....+|+.+.+.
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--QWNAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--HHHTCBCCCCC------
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--ehhhhhccCCCCEEEeC
Confidence 777777643 35666666777777777777766521 11111124556665554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=7.8e-06 Score=83.64 Aligned_cols=80 Identities=23% Similarity=0.172 Sum_probs=41.6
Q ss_pred cCCCCccEeecCCCcccccc---hhhhccCCCcEEeccCCcCcccCChhhhccc--cccceeecCccccccccc------
Q 040304 313 GCLKHLRYLNFSESWIKCLP---EAITSLFNLEILILSDCRLLLKLPSSIGNLV--NLYHLDIDGANRLCELPL------ 381 (1000)
Q Consensus 313 ~~l~~L~~L~Ls~n~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L~L~~~~~l~~ip~------ 381 (1000)
.++++|++|+|++|.|..++ ..+..+++|++|+|++|.+. .+ ..+..+. +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34556666666666555433 34556666666666666532 22 2233443 666666666643333331
Q ss_pred -cccCCcccCccCc
Q 040304 382 -GMKELKCLRTLTN 394 (1000)
Q Consensus 382 -~i~~L~~L~~L~~ 394 (1000)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2455666666643
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=5.1e-06 Score=90.00 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=11.2
Q ss_pred ccccCCCCcceEeecCC
Q 040304 777 IGLNNLSHLHRISIEGC 793 (1000)
Q Consensus 777 ~~~~~l~~L~~L~l~~c 793 (1000)
..+..+|+|+.|.+++|
T Consensus 166 ~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHHHTCTTCCEEEEECC
T ss_pred HHHhcCCCCcEEEEeCC
Confidence 34455677777777765
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.83 E-value=0.0021 Score=70.61 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=55.1
Q ss_pred CccccceeccccCCCccccCCC--CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCC
Q 040304 827 KISSLQELSLKKCPGIVFFPEE--GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPT 904 (1000)
Q Consensus 827 ~l~~L~~L~l~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 904 (1000)
++..|+.+.+..+ +..+... ..+.+|+.+.+..+ ...++...|.++++|+.+.+.++ .++.++. .+|..++
T Consensus 238 ~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~--~aF~~c~ 310 (379)
T 4h09_A 238 GMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEP--RVFMDCV 310 (379)
T ss_dssp TCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECT--TTTTTCT
T ss_pred CCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceecccccccccccccccccccc-ccceehh--hhhcCCC
Confidence 4555665555433 3333333 34556666666433 22244445666666666666542 3444443 3344556
Q ss_pred CcCeEEeccCCCccccCccccCCCCccccccccC
Q 040304 905 SLTWIRISDFPKLERLSSKGFHYLVSLESLEVFS 938 (1000)
Q Consensus 905 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 938 (1000)
+|+++.+.+ .++.+....|.++++|+.+.+.+
T Consensus 311 ~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 311 KLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred CCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 666666643 35556556666666666666643
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=5e-06 Score=85.04 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=67.2
Q ss_pred hhcCCCcceEEEcCCccccccc---ccccCCCCccEeecCCCcccccchhhhccC--CCcEEeccCCcCcccCCh-----
Q 040304 288 LLPKCKKLRVLSLGRYRISEVP---TSIGCLKHLRYLNFSESWIKCLPEAITSLF--NLEILILSDCRLLLKLPS----- 357 (1000)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lp~----- 357 (1000)
...+++.|++|+|++|.++.++ ..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.+.+.+|.
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 3457889999999999998654 5677899999999999999987 3355565 999999999997776762
Q ss_pred --hhhccccccceee
Q 040304 358 --SIGNLVNLYHLDI 370 (1000)
Q Consensus 358 --~i~~L~~L~~L~L 370 (1000)
.+..+++|+.||-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 3678899999873
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.79 E-value=1e-05 Score=87.60 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.7
Q ss_pred CCCccEEEeccccCcc
Q 040304 851 STNLTYLEISGANIYK 866 (1000)
Q Consensus 851 l~~L~~L~L~~n~~~~ 866 (1000)
+++|++|+|+.|.+.+
T Consensus 278 ~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 278 LPQLETMDISAGVLTD 293 (362)
T ss_dssp GGGCSEEECCSSCCBH
T ss_pred CCCCCEEECCCCCCCh
Confidence 4455555555544433
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=2.5e-05 Score=73.70 Aligned_cols=88 Identities=11% Similarity=0.166 Sum_probs=56.8
Q ss_pred ccccEEEEecccCceeccccccCccccceEeecCCCchhhhhhhc-CC----cccccceeecccccccccc-ccccCCCC
Q 040304 711 VTLKRLEIWCCYNFKVLTSECQLPVAIEALTISNCSNLESIAERF-YD----DACLRSILISSCDNLKSLP-IGLNNLSH 784 (1000)
Q Consensus 711 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~L~~~~~l~~l~~~~-~~----l~~L~~L~l~~~~~l~~~~-~~~~~l~~ 784 (1000)
..|+.|++++|.....--..+..+++|+.|+|++|..+++-.... .. .++|++|++++|..++.-- ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 367777777776322212234567888888888888766543221 11 2468888888887766531 23556788
Q ss_pred cceEeecCCCCccc
Q 040304 785 LHRISIEGCHNLVS 798 (1000)
Q Consensus 785 L~~L~l~~c~~l~~ 798 (1000)
|+.|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888877764
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=1.1e-05 Score=78.55 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=78.0
Q ss_pred hhhhhcCCCcceEEEcCCc-ccc-----cccccccCCCCccEeecCCCcccc-----cchhhhccCCCcEEeccCCcCcc
Q 040304 285 ISDLLPKCKKLRVLSLGRY-RIS-----EVPTSIGCLKHLRYLNFSESWIKC-----LPEAITSLFNLEILILSDCRLLL 353 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~ 353 (1000)
+...+...+.|++|+|++| .+. .+...+...++|++|+|++|.|.. +...+...+.|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4556777888999999998 776 345667778889999999998863 45567777889999999987432
Q ss_pred c----CChhhhccccccceee--cCcccccc-----ccccccCCcccCccC
Q 040304 354 K----LPSSIGNLVNLYHLDI--DGANRLCE-----LPLGMKELKCLRTLT 393 (1000)
Q Consensus 354 ~----lp~~i~~L~~L~~L~L--~~~~~l~~-----ip~~i~~L~~L~~L~ 393 (1000)
. +...+...++|++|++ ++| .++. +...+...++|++|+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEe
Confidence 2 4455667788999999 777 3433 334455567777774
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.67 E-value=0.0033 Score=69.08 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=91.0
Q ss_pred CccccceeccccCCCccccCCC--CCCCCccEEEeccccCcccccccccccCCccceEEECCCCCccccccccccccCCC
Q 040304 827 KISSLQELSLKKCPGIVFFPEE--GLSTNLTYLEISGANIYKPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPT 904 (1000)
Q Consensus 827 ~l~~L~~L~l~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 904 (1000)
.+.+|+.+.+..+ +..+... ..+.+|+.+.+..+ + ..+....|.++.+|+.+.+... +..++. ..|..++
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~--i~~i~~--~aF~~c~ 286 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK--VKTVPY--LLCSGCS 286 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-C-CEECTTTTTTCTTCCEEEECCC--CSEECT--TTTTTCT
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC-c-cEeCccccceeehhcccccccc--ceeccc--ccccccc
Confidence 5677777777543 4444443 55788999999765 3 3466668999999999999753 666654 4556779
Q ss_pred CcCeEEeccCCCccccCccccCCCCccccccccCCCCCcCCCCCCC--CCCcceEeec
Q 040304 905 SLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSCPNFTSFPEAGF--PSSLLSLKII 960 (1000)
Q Consensus 905 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~l~ 960 (1000)
+|+.+.+.++ .++.++...|.++++|+.+.+.++ ++.+....+ +++|+++.+.
T Consensus 287 ~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 287 NLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 9999999876 788888889999999999999653 677776544 5778877774
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.61 E-value=1.5e-05 Score=87.21 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=25.1
Q ss_pred CCCccEeecCCCcccc-----cchhhhccCCCcEEeccCCcCcc----cCChhhhccccccceeecCc
Q 040304 315 LKHLRYLNFSESWIKC-----LPEAITSLFNLEILILSDCRLLL----KLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 315 l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~L~~~ 373 (1000)
.++|++|+|++|.|+. ++..+...++|++|+|++|.+.. .++..+...++|++|+|++|
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 3445555555544432 23333444445555555444211 11223334444555555444
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=0.00011 Score=71.33 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=72.0
Q ss_pred hhhhhhcCCCcceEEEcCCccccc-----ccccccCCCCccEeecCCCcccc-----cchhhhccCCCcEEec--cCCcC
Q 040304 284 VISDLLPKCKKLRVLSLGRYRISE-----VPTSIGCLKHLRYLNFSESWIKC-----LPEAITSLFNLEILIL--SDCRL 351 (1000)
Q Consensus 284 ~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L--~~~~~ 351 (1000)
.+...+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|.. +...+...+.|++|+| ++|.+
T Consensus 56 ~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 56 ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 345567778899999999999873 45666777899999999999885 5677888899999999 77874
Q ss_pred ccc----CChhhhccccccceeecCcc
Q 040304 352 LLK----LPSSIGNLVNLYHLDIDGAN 374 (1000)
Q Consensus 352 ~~~----lp~~i~~L~~L~~L~L~~~~ 374 (1000)
... +...+...++|++|++++|.
T Consensus 136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 136 GNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 322 33445667899999999983
No 165
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.01 E-value=0.0072 Score=65.42 Aligned_cols=170 Identities=11% Similarity=0.075 Sum_probs=101.8
Q ss_pred CCcEEEEEcCChHHHhhc-----------CC-CceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCC
Q 040304 5 PGSRIIVTTRSRDVASKM-----------GP-VKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGL 72 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 72 (1000)
++.++|+|++...+.... +. ...+++.||+.+|+.+++.... +...... -.+.+.++.+.|+|.
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~~---~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLDV---PENEIEEAVELLDGI 238 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCCC---CHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCCC---CHHHHHHHHHHhCCC
Confidence 468899999886542211 11 2479999999999999998753 2111111 135788999999999
Q ss_pred hhhHHHHHhhhccCCcHHHHH-HHhhhccccCCCCCCchHHHHHhhccC---chhHHHHhhhhcccCCCCCCChHHHHHH
Q 040304 73 PLAARALGGLLGSKQRVDEWR-AILDSKIWDLEDETEVPSVLKLSYHHL---PSHLKRCFAYCAILPKDYEFQEEELVLL 148 (1000)
Q Consensus 73 PlAl~~~g~~L~~~~~~~~w~-~~l~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~~fl~~~~f~~~~~i~~~~l~~~ 148 (1000)
|.++..++..+....+...|- .+.+. +...+.-.+..+ ++..+..+..+|. + .++...+...
T Consensus 239 P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~ 304 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRAMKRTLEV----------AKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDY 304 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHH
T ss_pred HHHHHHHHHHHhccccHhHHHHHHHHH----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHH
Confidence 999999987653322222221 11111 111111122222 6778889998887 2 2455555544
Q ss_pred HHHcCCCccCcccchHHHHHHHHHHHHHhcccccccCCCCCeEEE-chHHHHHHH
Q 040304 149 WIAEGLIQQSKDRKQADDLGSEYFHDLLSRSLFQKSSNSGSKFVM-HDLVHDLAQ 202 (1000)
Q Consensus 149 w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~m-hdlv~~~~~ 202 (1000)
..... - + ........+++.|++++++...+ ..|++ |.+++.+.+
T Consensus 305 ~~~~~-~-~-----~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 305 LAVKG-T-K-----IPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHTT-C-C-----CCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHh-C-C-----CCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 32211 0 0 01234677899999999998652 35766 677776643
No 166
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.77 E-value=0.011 Score=64.08 Aligned_cols=169 Identities=13% Similarity=0.064 Sum_probs=101.2
Q ss_pred CCcEEEEEcCChHHHhhc-----------CC-CceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCC
Q 040304 5 PGSRIIVTTRSRDVASKM-----------GP-VKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGL 72 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 72 (1000)
++.++|+|+|.......+ +. ...++++||+.+|+.+++........ ... ++ ..+|++.|+|.
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~-~~----~~~i~~~t~G~ 242 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDF-KD----YEVVYEKIGGI 242 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCC-CC----HHHHHHHHCSC
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCC-Cc----HHHHHHHhCCC
Confidence 467899999987643211 11 25799999999999999987542111 111 12 17899999999
Q ss_pred hhhHHHHHhhhccCCcHHHHHH-HhhhccccCCCCCCchHHHH-Hhhc--cCchhHHHHhhhhcccCCCCCCChHHHHHH
Q 040304 73 PLAARALGGLLGSKQRVDEWRA-ILDSKIWDLEDETEVPSVLK-LSYH--HLPSHLKRCFAYCAILPKDYEFQEEELVLL 148 (1000)
Q Consensus 73 PlAl~~~g~~L~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~ 148 (1000)
|+++..++..+........|-. +.+.... .+...+. +.++ .+++..|..+..+|+ +. +...+...
T Consensus 243 P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~ 311 (357)
T 2fna_A 243 PGWLTYFGFIYLDNKNLDFAINQTLEYAKK------LILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRA 311 (357)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHH
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHH------HHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHH
Confidence 9999999887654333333321 1111000 0111121 1221 678889999999998 22 45554432
Q ss_pred HH-HcCCCccCcccchHHHHHHHHHHHHHhcccccccCCCCCeEEE-chHHHHH
Q 040304 149 WI-AEGLIQQSKDRKQADDLGSEYFHDLLSRSLFQKSSNSGSKFVM-HDLVHDL 200 (1000)
Q Consensus 149 w~-~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~m-hdlv~~~ 200 (1000)
.. ..|. .........+++.|++++++...+ ..|++ |++++++
T Consensus 312 ~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 312 LELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred HHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 21 1121 001234677899999999998653 35775 7788765
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0032 Score=56.54 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=46.0
Q ss_pred eEEEcCCcccc--cccccccCCCCccEeecCCCcccccchh-hhccCCCcEEeccCCcC
Q 040304 296 RVLSLGRYRIS--EVPTSIGCLKHLRYLNFSESWIKCLPEA-ITSLFNLEILILSDCRL 351 (1000)
Q Consensus 296 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~ 351 (1000)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+.+|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47889999998 8887654 5799999999999999876 88899999999999864
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.96 E-value=0.019 Score=63.70 Aligned_cols=160 Identities=11% Similarity=-0.019 Sum_probs=93.0
Q ss_pred CcEEEEEcCChHHHhhcC---------CCceEeCCCCChHhhHHHHHHhh---cCCCCCCCCcchHHHHHHHHHHcc---
Q 040304 6 GSRIIVTTRSRDVASKMG---------PVKYYGLKLLSDDDCWSVFVAHA---FDSRDAGTHGNFESTRQRVVEKCK--- 70 (1000)
Q Consensus 6 gs~ilvTtR~~~v~~~~~---------~~~~~~l~~L~~~~a~~Lf~~~~---~~~~~~~~~~~~~~~~~~i~~~c~--- 70 (1000)
...||+|||..++...+. ....+++++++.++++++|...+ |.... --.+.+..+++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV-----WEPRHLELISDVYGEDK 253 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS-----CCHHHHHHHHHHHCGGG
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHhc
Confidence 345888888665432111 12349999999999999997653 32111 11367788899999
Q ss_pred ---CChhhHHHHHhh-h--c---cC--CcHHHHHHHhhhccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccC--CC
Q 040304 71 ---GLPLAARALGGL-L--G---SK--QRVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILP--KD 137 (1000)
Q Consensus 71 ---glPlAl~~~g~~-L--~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~--~~ 137 (1000)
|.|..+..+... . + +. -+.+.+..+...... ...+.-.++.|++..|.++..+|.+. .+
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 999655444332 1 1 11 123444444333110 22344467889999999999898764 23
Q ss_pred CCCChHHHHHHHH--H---cCCCccCcccchHHHHHHHHHHHHHhccccccc
Q 040304 138 YEFQEEELVLLWI--A---EGLIQQSKDRKQADDLGSEYFHDLLSRSLFQKS 184 (1000)
Q Consensus 138 ~~i~~~~l~~~w~--~---~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 184 (1000)
..++..++...+. + .|. . .........++++|.+.+++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNV-K-----PRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCC-C-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHHHHHHhhcCC-C-----CCCHHHHHHHHHHHHhCCCEEee
Confidence 3466655554332 1 121 0 01124466789999999999864
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.10 E-value=0.054 Score=48.41 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=26.4
Q ss_pred EEEeccccCc-ccccccccccCCccceEEECCCCCccccccccccccCCCCcCeEEeccCC
Q 040304 856 YLEISGANIY-KPLVNWGFHKLTSLRKLCINGCSDAASFPEVEKGVILPTSLTWIRISDFP 915 (1000)
Q Consensus 856 ~L~L~~n~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 915 (1000)
.++-+++.+. ..+|.. --++|+.|+|++| .++.++. ..+..+++|+.|+|.+||
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N-~l~~l~~--~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGN-NLTALPP--GLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTS-CCSSCCT--TTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCC-cCCccCh--hhhhhccccCEEEecCCC
Confidence 4555555554 124431 1235666666664 4555553 223344556666666654
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.73 E-value=0.061 Score=51.60 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=63.0
Q ss_pred hhhhhcCCCcceEEEcCCc-ccc-----cccccccCCCCccEeecCCCccc-----ccchhhhccCCCcEEeccCCcCcc
Q 040304 285 ISDLLPKCKKLRVLSLGRY-RIS-----EVPTSIGCLKHLRYLNFSESWIK-----CLPEAITSLFNLEILILSDCRLLL 353 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~~~ 353 (1000)
+...+.+-+.|+.|+|++| .|. .+-.++..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3444566678999999985 765 34566777788999999999887 345566777889999999988432
Q ss_pred ----cCChhhhccccccceeecCc
Q 040304 354 ----KLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 354 ----~lp~~i~~L~~L~~L~L~~~ 373 (1000)
.+-+.+..-+.|++|+|+++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 12223444456888888765
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.45 E-value=2.8 Score=45.41 Aligned_cols=159 Identities=11% Similarity=-0.036 Sum_probs=92.5
Q ss_pred CCcEEEEEcCChHH--------HhhcCCCceEeCCCCChHhhHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHcc---CC
Q 040304 5 PGSRIIVTTRSRDV--------ASKMGPVKYYGLKLLSDDDCWSVFVAHAFD-SRDAGTHGNFESTRQRVVEKCK---GL 72 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---gl 72 (1000)
.+.+||+||+.... ...++ ..+++++++.++..++|...+-. ....... .+..+.+++.|+ |-
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~ 237 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGD 237 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCC
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCC
Confidence 46789999987532 22222 38999999999999999987531 1111111 245677778887 87
Q ss_pred hh-hHHHHHhhh--c---cCCcHHHHHHHhhhccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccCCCCCCChHHHH
Q 040304 73 PL-AARALGGLL--G---SKQRVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELV 146 (1000)
Q Consensus 73 Pl-Al~~~g~~L--~---~~~~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~ 146 (1000)
|- |+.++..+. + ..-+.++++.++.... ...+.-+++.|+++.|..+..++....+.++. +...
T Consensus 238 ~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~---------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~ 307 (384)
T 2qby_B 238 ARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE---------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYT 307 (384)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH---------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh---------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHH
Confidence 76 444433322 1 1224677777665521 24567788999988887777777511100110 1111
Q ss_pred HHHHHcCCCccCcccchHHHHHHHHHHHHHhccccccc
Q 040304 147 LLWIAEGLIQQSKDRKQADDLGSEYFHDLLSRSLFQKS 184 (1000)
Q Consensus 147 ~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 184 (1000)
..--..| ... ........++..|.++++++..
T Consensus 308 ~~~~~~g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 308 DLCNKFK-QKP-----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcC-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 1111223 111 1234567789999999999864
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.01 E-value=0.81 Score=48.36 Aligned_cols=74 Identities=11% Similarity=-0.033 Sum_probs=48.3
Q ss_pred CcEEEEEcCChHHHhh-c--CCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHhh
Q 040304 6 GSRIIVTTRSRDVASK-M--GPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGGL 82 (1000)
Q Consensus 6 gs~ilvTtR~~~v~~~-~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~~ 82 (1000)
+.++|.||........ . .....+++++++.+|..+++.+.+..... .. -.+..+.++++++|.|-.+..+...
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3567776665432211 1 11257999999999999999887743221 11 1367788999999999877665544
Q ss_pred h
Q 040304 83 L 83 (1000)
Q Consensus 83 L 83 (1000)
+
T Consensus 214 ~ 214 (324)
T 1hqc_A 214 V 214 (324)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.99 E-value=0.17 Score=48.45 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=64.5
Q ss_pred hhhhhcCCCcceEEEcCCcccc-----cccccccCCCCccEeecCCCcccc-----cchhhhccCCCcEEeccCCcC--c
Q 040304 285 ISDLLPKCKKLRVLSLGRYRIS-----EVPTSIGCLKHLRYLNFSESWIKC-----LPEAITSLFNLEILILSDCRL--L 352 (1000)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~--~ 352 (1000)
+-.++..-..|+.|+|++|.|. .|...+..-+.|++|+|++|.|.. +-+.+..-+.|++|+|++|.. +
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 4455666788999999999987 345556667889999999999873 445566667899999987531 2
Q ss_pred c-----cCChhhhccccccceeecCc
Q 040304 353 L-----KLPSSIGNLVNLYHLDIDGA 373 (1000)
Q Consensus 353 ~-----~lp~~i~~L~~L~~L~L~~~ 373 (1000)
+ .+-..+..-+.|+.|+++.+
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2 12233445567888888766
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.71 E-value=3.1 Score=44.95 Aligned_cols=161 Identities=12% Similarity=0.002 Sum_probs=92.8
Q ss_pred CCcEEEEEcCChH--------HHhhcCCCceEeCCCCChHhhHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHcc---CC
Q 040304 5 PGSRIIVTTRSRD--------VASKMGPVKYYGLKLLSDDDCWSVFVAHAFD-SRDAGTHGNFESTRQRVVEKCK---GL 72 (1000)
Q Consensus 5 ~gs~ilvTtR~~~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---gl 72 (1000)
.+..+|+||+... +..+++. ..+++++++.++..+++...+-. .......+ +..+.++++++ |-
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~ 241 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLGE-VELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGD 241 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTTS-EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCC
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCCC-eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccC
Confidence 4567888887763 2222221 47999999999999999887421 01111112 35667777777 99
Q ss_pred h-hhHHHHHhhhc-----c--CCcHHHHHHHhhhccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccCCC-CCCChH
Q 040304 73 P-LAARALGGLLG-----S--KQRVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILPKD-YEFQEE 143 (1000)
Q Consensus 73 P-lAl~~~g~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~-~~i~~~ 143 (1000)
| .|+.++..+.. + .-+.+.++.++... ....+.-++..|+++.+..++.++....+ ..+...
T Consensus 242 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~ 312 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAERRREERVRREHVYSARAEI---------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTG 312 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 8 44443333221 1 12356666665542 12356667889999888877777744333 234444
Q ss_pred HHHHHH----HHcCCCccCcccchHHHHHHHHHHHHHhccccccc
Q 040304 144 ELVLLW----IAEGLIQQSKDRKQADDLGSEYFHDLLSRSLFQKS 184 (1000)
Q Consensus 144 ~l~~~w----~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 184 (1000)
++.+.. -..| ..+ .....+..+++.|...++++..
T Consensus 313 ~~~~~~~~~~~~~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 313 EIYERYKELTSTLG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 333322 1223 111 1235577889999999999873
No 175
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.33 E-value=1.5 Score=43.77 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=53.1
Q ss_pred CCCcEEEEEcCChHHHhh--cCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHh
Q 040304 4 APGSRIIVTTRSRDVASK--MGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGG 81 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~--~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~ 81 (1000)
..+.++|+||+....... ......+++++++.++.++++...+..... . --.+..+.+++.|+|.|..+..+..
T Consensus 154 ~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 154 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-A---HEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-C---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356788998877542221 122357999999999999999987743221 1 1135678899999999998877654
Q ss_pred hh
Q 040304 82 LL 83 (1000)
Q Consensus 82 ~L 83 (1000)
.+
T Consensus 230 ~~ 231 (250)
T 1njg_A 230 QA 231 (250)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.45 E-value=9.7 Score=40.89 Aligned_cols=162 Identities=9% Similarity=-0.011 Sum_probs=90.2
Q ss_pred CCcEEEEEcCChHHHhhcCC-------CceEeCCCCChHhhHHHHHHhhcCC-CCCCCCcchHHHHHHHHHHcc---CCh
Q 040304 5 PGSRIIVTTRSRDVASKMGP-------VKYYGLKLLSDDDCWSVFVAHAFDS-RDAGTHGNFESTRQRVVEKCK---GLP 73 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v~~~~~~-------~~~~~l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---glP 73 (1000)
.+..+|+||+.......+.. ...+++++++.++.++++...+... .... --.+..+.+++.++ |-|
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGV---LPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSC---SCHHHHHHHHHHHHHTTCCH
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHhcCCH
Confidence 35667888887654332221 1479999999999999998864211 1111 12356677777777 988
Q ss_pred hh-HHHHHhhhc-----c--CCcHHHHHHHhhhccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccCC-C-CCCChH
Q 040304 74 LA-ARALGGLLG-----S--KQRVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILPK-D-YEFQEE 143 (1000)
Q Consensus 74 lA-l~~~g~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~-~-~~i~~~ 143 (1000)
.. +.++..+.. + .-+.+.++.++... ....+.-.+..+++..+..+..++.+.+ + ..+...
T Consensus 239 r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~ 309 (386)
T 2qby_A 239 RRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI---------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTG 309 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHH
Confidence 74 433332221 1 11345555554432 1245666788898888887777775432 2 123343
Q ss_pred HHHHHH----HHcCCCccCcccchHHHHHHHHHHHHHhccccccc
Q 040304 144 ELVLLW----IAEGLIQQSKDRKQADDLGSEYFHDLLSRSLFQKS 184 (1000)
Q Consensus 144 ~l~~~w----~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 184 (1000)
++.+.. -..| +.+ ........+++.|.++++++..
T Consensus 310 ~l~~~~~~~~~~~g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 310 AVYETYLNICKKLG-VEA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHHHHHT-CCC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 332221 1112 111 1123466789999999999763
No 177
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.09 E-value=20 Score=38.44 Aligned_cols=163 Identities=11% Similarity=0.048 Sum_probs=92.3
Q ss_pred CCcEEEEEcCChHHHhhcC-------CCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHc--------
Q 040304 5 PGSRIIVTTRSRDVASKMG-------PVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKC-------- 69 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c-------- 69 (1000)
.+..||+||+...+..... ....++++|++.++..+++...+........ --.+..+.+++.+
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGS--YSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTS--SCHHHHHHHHHHHSBSSTTCT
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHhhcccCCC
Confidence 4678888888775544322 1136999999999999999887532100001 1135677888888
Q ss_pred -cCChhhH-HHHHhhhc-----cC--CcHHHHHHHhhhccccCCCCCCchHHHHHhhccCchhHHHHhhhhcccC---CC
Q 040304 70 -KGLPLAA-RALGGLLG-----SK--QRVDEWRAILDSKIWDLEDETEVPSVLKLSYHHLPSHLKRCFAYCAILP---KD 137 (1000)
Q Consensus 70 -~glPlAl-~~~g~~L~-----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~---~~ 137 (1000)
+|-|-.+ .++..+.. +. -+.+....+..... ...+.-.++.|+.+.|.++..++.+. .+
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~---------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~ 306 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL---------FGISEEVLIGLPLHEKLFLLAIVRSLKISHT 306 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS---------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh---------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccC
Confidence 6876443 33322221 11 11233333332211 01123346778888888877777654 23
Q ss_pred CCCChHHHHHHHHH----cCCCccCcccchHHHHHHHHHHHHHhccccccc
Q 040304 138 YEFQEEELVLLWIA----EGLIQQSKDRKQADDLGSEYFHDLLSRSLFQKS 184 (1000)
Q Consensus 138 ~~i~~~~l~~~w~~----~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 184 (1000)
..+...++...+.. .|... ........++.+|.++++|...
T Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 307 PYITFGDAEESYKIVCEEYGERP------RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp SCEEHHHHHHHHHHHHHHTTCCC------CCHHHHHHHHHHHHHTTSSEEE
T ss_pred CCccHHHHHHHHHHHHHHcCCCC------CCHHHHHHHHHHHHhCCCeEEe
Confidence 24556666554433 23111 1134467789999999999874
No 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=63.62 E-value=15 Score=35.42 Aligned_cols=73 Identities=8% Similarity=-0.040 Sum_probs=48.8
Q ss_pred CCCcEEEEEcCChHHHhh--cCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHH
Q 040304 4 APGSRIIVTTRSRDVASK--MGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALG 80 (1000)
Q Consensus 4 ~~gs~ilvTtR~~~v~~~--~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g 80 (1000)
..+.++|+||+....... ......+++++++.++..+++.+.+...... --.+..+.+++.++|.|..+..+.
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 356788999887542211 1122479999999999999998876432211 113567788899999998655443
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.41 E-value=38 Score=35.00 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=48.0
Q ss_pred CCcEEEEEcCChHHH-hhc-CCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChh-hHHHHHh
Q 040304 5 PGSRIIVTTRSRDVA-SKM-GPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPL-AARALGG 81 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v~-~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-Al~~~g~ 81 (1000)
+++++|+||+...-. ... .....+++++++.++..+++...+...+ ... -.+.+..+++.|+|-|. |+..+..
T Consensus 136 ~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED-VKY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567888888764321 111 2234899999999999999988763221 111 13567889999999995 4544443
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=33.53 E-value=86 Score=30.32 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=44.3
Q ss_pred EEEEEcCC---------hHHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHH
Q 040304 8 RIIVTTRS---------RDVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARA 78 (1000)
Q Consensus 8 ~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~ 78 (1000)
+||+||+. ..+..++.....+++++++.++..+++...+.... ... -.+....+++.++|-+-.+..
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~---~~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQL---PEDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCC---CHHHHHHHHHHTTTCHHHHHH
T ss_pred eEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHccCCHHHHHH
Confidence 47777763 22333332236799999999999999988763221 111 135677888999998766544
Q ss_pred H
Q 040304 79 L 79 (1000)
Q Consensus 79 ~ 79 (1000)
+
T Consensus 216 ~ 216 (242)
T 3bos_A 216 V 216 (242)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=30.47 E-value=26 Score=19.94 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=14.8
Q ss_pred HccCChhhHHHHHhhhccC
Q 040304 68 KCKGLPLAARALGGLLGSK 86 (1000)
Q Consensus 68 ~c~glPlAl~~~g~~L~~~ 86 (1000)
+-.-+|||..++|+.+..+
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 3456999999999987654
No 182
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=25.59 E-value=1.5e+02 Score=30.19 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=48.0
Q ss_pred CCcEEEEEcCChHHHh-hc-CCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHHHh
Q 040304 5 PGSRIIVTTRSRDVAS-KM-GPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARALGG 81 (1000)
Q Consensus 5 ~gs~ilvTtR~~~v~~-~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~g~ 81 (1000)
.++++|+||+...-.. .. .....+++.+++.++..+++...+...+ .. --.+..+.+++.++|-|-++..+..
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LE---LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT-CE---ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcC-CC---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 5678888887653211 10 1124799999999999999988764322 11 1135678889999999986654433
No 183
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.50 E-value=79 Score=26.00 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=13.3
Q ss_pred ccccccccCCccceEEECC
Q 040304 868 LVNWGFHKLTSLRKLCING 886 (1000)
Q Consensus 868 ~~~~~~~~l~~L~~L~l~~ 886 (1000)
|....|.++.+|+.+.|..
T Consensus 11 I~~~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQP 29 (100)
T ss_dssp SCSCTTTTCTTCCCEEECT
T ss_pred ecHHHhcCCCCCcEEEcCC
Confidence 4445677778888777775
No 184
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.61 E-value=90 Score=25.64 Aligned_cols=40 Identities=18% Similarity=-0.006 Sum_probs=29.8
Q ss_pred ccccCCCCcCeEEeccCCCccccCccccCCCCccccccccCC
Q 040304 898 KGVILPTSLTWIRISDFPKLERLSSKGFHYLVSLESLEVFSC 939 (1000)
Q Consensus 898 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 939 (1000)
.+|..+++|+++.|-.. ++.+....|.++.+|+.+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 45567788888888654 56666678888888888888653
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=22.22 E-value=1.3e+02 Score=32.72 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=46.4
Q ss_pred CCcEEEEEcCC---------hHHHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhh
Q 040304 5 PGSRIIVTTRS---------RDVASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLA 75 (1000)
Q Consensus 5 ~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlA 75 (1000)
.|..||+||.. ..+..++....++++++++.++-.+++.+.+-... ...++ +....|++.++|-+-.
T Consensus 226 ~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~-~~i~~---e~l~~la~~~~gn~R~ 301 (440)
T 2z4s_A 226 SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEH-GELPE---EVLNFVAENVDDNLRR 301 (440)
T ss_dssp TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHT-CCCCT---THHHHHHHHCCSCHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCH---HHHHHHHHhcCCCHHH
Confidence 57789998876 34444454446789999999999999988763221 11112 3466788888887754
Q ss_pred H
Q 040304 76 A 76 (1000)
Q Consensus 76 l 76 (1000)
+
T Consensus 302 l 302 (440)
T 2z4s_A 302 L 302 (440)
T ss_dssp H
T ss_pred H
Confidence 4
No 186
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=21.30 E-value=4.3e+02 Score=26.95 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=43.4
Q ss_pred cEEEEEcCChH-----HHhhcCCCceEeCCCCChHhhHHHHHHhhcCCCCCCCCcchHHHHHHHHHHccCChhhHHHH
Q 040304 7 SRIIVTTRSRD-----VASKMGPVKYYGLKLLSDDDCWSVFVAHAFDSRDAGTHGNFESTRQRVVEKCKGLPLAARAL 79 (1000)
Q Consensus 7 s~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlAl~~~ 79 (1000)
-++|.+|.... +..+ ....+++++++.++..+++.+.+-... . .--.+..+.+++.++|.|-.+..+
T Consensus 155 ~~~i~atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~~~~-~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAALKLN-K---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHTT-C---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 45666665533 2222 235799999999999999988763221 1 112356778888999998555433
Done!