BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040305
         (80 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1W|B Chain B, The Solution Structure Of Soybean Calmodulin Isoform 4
          Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
          Length = 25

 Score = 35.4 bits (80), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 21/25 (84%)

Query: 22 ALKRWRSACAIVKNRRRRFCMVTNL 46
          A +RWRS+ +IVKNR RRF M++NL
Sbjct: 1  ARQRWRSSVSIVKNRARRFRMISNL 25


>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
           Dehydrogenase From Bacillus Halodurans
 pdb|3QAN|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
           Dehydrogenase From Bacillus Halodurans
 pdb|3QAN|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
           Dehydrogenase From Bacillus Halodurans
          Length = 538

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 5   SEDFDVQPWRSVHPSEEALKRWRSACAIVKNRRRRF 40
           S D   Q WR+V+P E A    ++A AI++ R+  F
Sbjct: 82  SADEAFQTWRNVNPEERANILVKAA-AIIRRRKHEF 116


>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
           Pyrobaculum Aerophilum
 pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
           Pyrobaculum Aerophilum
          Length = 303

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 12  PWRSVHPSEEALKRWRSA-CAIVKNRRRR 39
           PWR  +  EEAL+  R+A CA+  N+  R
Sbjct: 161 PWRFTNSLEEALREARAAVCALPLNKHTR 189


>pdb|3RPF|C Chain C, Protein-Protein Complex Of Subunit 1 And 2 Of
          Molybdopterin-Converting Factor From Helicobacter
          Pylori 26695
 pdb|3RPF|D Chain D, Protein-Protein Complex Of Subunit 1 And 2 Of
          Molybdopterin-Converting Factor From Helicobacter
          Pylori 26695
          Length = 74

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 9  DVQPWRSVHPSEEALKRWRSACAIVKN 35
          D++  R++   +E LK W   CAI  N
Sbjct: 22 DLKELRAILQEKEGLKEWLGVCAIALN 48


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.134    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,760,884
Number of Sequences: 62578
Number of extensions: 44612
Number of successful extensions: 142
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 4
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)