Query 040305
Match_columns 80
No_of_seqs 83 out of 85
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aqr_D Calcium-transporting AT 99.7 3.5E-19 1.2E-23 108.2 2.8 48 18-70 1-48 (57)
2 2l1w_B Vacuolar calcium ATPase 98.9 1.6E-10 5.4E-15 60.3 0.6 26 22-47 1-26 (26)
3 3kf9_B MLCK2, myosin light cha 49.9 4.5 0.00016 19.8 0.5 17 24-41 2-18 (22)
4 2r28_C Serine/threonine-protei 24.5 72 0.0025 15.9 2.5 21 54-74 3-23 (26)
5 1mxe_E CAM kinase I, target se 19.7 36 0.0012 16.2 0.8 9 22-30 6-14 (26)
6 2ld7_A Histone deacetylase com 12.2 1.6E+02 0.0056 18.4 2.6 49 18-74 27-75 (94)
7 2vy1_A Protein leafy, leafy; D 8.8 1E+02 0.0036 21.7 0.8 14 25-38 113-128 (194)
8 3jrn_A AT1G72930 protein; TIR 6.8 2.6E+02 0.0088 18.9 2.1 18 19-36 129-146 (176)
9 1xi4_J LCA, clathrin light cha 6.0 2.9E+02 0.0099 16.3 1.8 12 18-29 6-17 (70)
10 1ds6_B RHO GDP-dissociation in 5.8 2.3E+02 0.0079 19.6 1.4 13 18-30 19-31 (180)
No 1
>4aqr_D Calcium-transporting ATPase 8, plasma membrane-TY; Ca-binding protein-hydrolase complex, plasma-membrane calciu; 1.95A {Arabidopsis thaliana}
Probab=99.75 E-value=3.5e-19 Score=108.16 Aligned_cols=48 Identities=35% Similarity=0.483 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHhhhhhhhccccccccccccchhhHHHhHHHHHHhhhhhhhhH
Q 040305 18 PSEEALKRWRSACAIVKNRRRRFCMVTNLANHAEARDHKLKIQVLFYSLLSFL 70 (80)
Q Consensus 18 ~s~ealrRWR~A~~lViN~~RRFr~~adL~k~~~~~~~rr~i~~kir~~~~~~ 70 (80)
+|+|+|+|||+| +||+||+||||||+||+|+++++.+++ ||+++.+|+
T Consensus 1 ~s~e~L~rWR~a-~lVlNa~RRFR~t~dL~K~~e~~~~~r----kiR~~~~v~ 48 (57)
T 4aqr_D 1 SSIERLQQWRKA-ALVLNASRRFRYTLDLKKEQETREMRQ----KIRSHAHAL 48 (57)
T ss_dssp CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred CcHHHHHHHHHH-HHHhchHhhhhhhcchhhHHHHHHHHH----HHHHHHHHH
Confidence 478999999999 599999999999999999999999988 566666655
No 2
>2l1w_B Vacuolar calcium ATPase BCA1 peptide; calmodulin, calmodulin complex, soybean calmodulin, vacuolar ATPase, metal binding protein; NMR {Glycine max}
Probab=98.92 E-value=1.6e-10 Score=60.28 Aligned_cols=26 Identities=62% Similarity=1.006 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhhhcccccccccccc
Q 040305 22 ALKRWRSACAIVKNRRRRFCMVTNLA 47 (80)
Q Consensus 22 alrRWR~A~~lViN~~RRFr~~adL~ 47 (80)
+++|||+|+++|+|++|||+|++||+
T Consensus 1 al~rWR~a~~~v~n~~rrfr~~~~L~ 26 (26)
T 2l1w_B 1 ARQRWRSSVSIVKNRARRFRMISNLX 26 (26)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHC-
T ss_pred CchhHHHHHHHHhCcccccccccccC
Confidence 47999999889999999999999983
No 3
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=49.90 E-value=4.5 Score=19.82 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=14.0
Q ss_pred HHHHHhhhhhhhcccccc
Q 040305 24 KRWRSACAIVKNRRRRFC 41 (80)
Q Consensus 24 rRWR~A~~lViN~~RRFr 41 (80)
++|.+++ .++++..||+
T Consensus 2 ~~WkK~f-~av~Aanrl~ 18 (22)
T 3kf9_B 2 RRWKKNF-IAVSAANRFK 18 (26)
T ss_dssp HHHHHHH-HHHHHHHHHH
T ss_pred chHHHHH-HHHHHHHHHh
Confidence 6899996 8888888775
No 4
>2r28_C Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform; protein-peptide complex, acetylation, calcium, methylation; 1.86A {Homo sapiens} PDB: 2jzi_B
Probab=24.50 E-value=72 Score=15.89 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=15.8
Q ss_pred HhHHHHHHhhhhhhhhHhhhh
Q 040305 54 DHKLKIQVLFYSLLSFLLFFI 74 (80)
Q Consensus 54 ~~rr~i~~kir~~~~~~~~~~ 74 (80)
..+..++.||....-+...|-
T Consensus 3 ~r~~~ir~KI~aigkmsRmf~ 23 (26)
T 2r28_C 3 ARKEVIRNKIRAIGKMARVFS 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355668889998888887774
No 5
>1mxe_E CAM kinase I, target sequence of RAT calmodulin-dependent protein kinase I; calmodulin-pepide complex, XRAY, metal binding protein; 1.70A {Drosophila melanogaster} PDB: 2l7l_B
Probab=19.71 E-value=36 Score=16.17 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=7.1
Q ss_pred HHHHHHHhh
Q 040305 22 ALKRWRSAC 30 (80)
Q Consensus 22 alrRWR~A~ 30 (80)
+.++|++|.
T Consensus 6 Akrkwk~a~ 14 (26)
T 1mxe_E 6 AKSKWKQAF 14 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 678899984
No 6
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=12.17 E-value=1.6e+02 Score=18.38 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHhhhhhhhccccccccccccchhhHHHhHHHHHHhhhhhhhhHhhhh
Q 040305 18 PSEEALKRWRSACAIVKNRRRRFCMVTNLANHAEARDHKLKIQVLFYSLLSFLLFFI 74 (80)
Q Consensus 18 ~s~ealrRWR~A~~lViN~~RRFr~~adL~k~~~~~~~rr~i~~kir~~~~~~~~~~ 74 (80)
-+.++|+|.+....|-.+ .+..|...+...+++...----=..+|..||
T Consensus 27 L~~~tLrrY~r~y~L~~~--------~~~sK~qLa~aV~kHF~s~~VdE~evI~~Fl 75 (94)
T 2ld7_A 27 LQVNTLRRYKRHFKLPTR--------PGLNKAQLVEIVGCHFKSIPVNEKDTLTCFI 75 (94)
T ss_dssp SCHHHHHHHHHHTTCCCC--------SSCCHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCC--------CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 367899998888434222 2566666677776665432212224555555
No 7
>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription; 2.10A {Arabidopsis thaliana} PDB: 2vy2_A
Probab=8.79 E-value=1e+02 Score=21.74 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=9.2
Q ss_pred HHHHhhh--hhhhccc
Q 040305 25 RWRSACA--IVKNRRR 38 (80)
Q Consensus 25 RWR~A~~--lViN~~R 38 (80)
-|||||+ ||--+.+
T Consensus 113 aWrqAcY~pLv~iaa~ 128 (194)
T 2vy1_A 113 SWRQACYKPLVNIACR 128 (194)
T ss_dssp HHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3999997 5544443
No 8
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=6.83 E-value=2.6e+02 Score=18.86 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=12.8
Q ss_pred CHHHHHHHHHhhhhhhhc
Q 040305 19 SEEALKRWRSACAIVKNR 36 (80)
Q Consensus 19 s~ealrRWR~A~~lViN~ 36 (80)
..+..++||.|..-|-|-
T Consensus 129 ~~~~~~~Wr~AL~~va~~ 146 (176)
T 3jrn_A 129 DPEKVLKWRQALTNFAQL 146 (176)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 567889999997544443
No 9
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=6.02 E-value=2.9e+02 Score=16.31 Aligned_cols=12 Identities=25% Similarity=0.891 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHh
Q 040305 18 PSEEALKRWRSA 29 (80)
Q Consensus 18 ~s~ealrRWR~A 29 (80)
.-+++++.||.-
T Consensus 6 ~EpE~Ir~WRE~ 17 (70)
T 1xi4_J 6 SEPESIRKWREE 17 (70)
T ss_pred cCcHHHHHHHHH
Confidence 456799999986
No 10
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=5.78 E-value=2.3e+02 Score=19.57 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHhh
Q 040305 18 PSEEALKRWRSAC 30 (80)
Q Consensus 18 ~s~ealrRWR~A~ 30 (80)
...|+|+||.++.
T Consensus 19 ~~DESL~k~K~~L 31 (180)
T 1ds6_B 19 KDDESLIKYKKTL 31 (180)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHh
Confidence 3558999999984
Done!