Query 040305
Match_columns 80
No_of_seqs 83 out of 85
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 11:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh6a_ a.6.1.7 (A:) Excisiona 9.7 78 0.0057 16.9 1.8 12 18-29 16-27 (55)
2 d2vv5a2 d.58.43.1 (A:180-280) 5.6 1.2E+02 0.0089 16.0 1.4 29 35-63 2-30 (101)
3 d1d4ua2 g.39.1.5 (A:1-36) DNA 5.1 1.3E+02 0.0098 14.7 1.2 10 2-11 18-27 (36)
4 d1ds6b_ b.1.18.8 (B:) Rho GDP- 5.0 1.3E+02 0.0094 19.2 1.4 13 18-30 19-31 (179)
5 d1x1ga1 b.55.1.1 (A:8-123) Ple 4.3 2.2E+02 0.016 14.4 1.9 13 17-29 99-111 (116)
6 d1eaza_ b.55.1.1 (A:) Tapp1 {H 4.2 2.7E+02 0.02 13.7 2.4 19 18-36 83-101 (103)
7 d2ot9a1 c.52.1.33 (A:2-180) Hy 4.1 1.8E+02 0.013 18.5 1.6 34 18-51 32-65 (179)
8 d2go8a1 d.58.4.5 (A:3-110) Hyp 4.0 2E+02 0.014 16.5 1.6 13 18-30 64-76 (108)
9 d2v7qi1 a.137.8.1 (I:1-47) Eps 3.8 66 0.0048 16.7 -0.7 7 26-33 4-10 (47)
10 d1fs1a1 a.158.1.1 (A:109-149) 3.8 1.7E+02 0.012 13.4 1.0 8 23-30 28-35 (41)
No 1
>d1rh6a_ a.6.1.7 (A:) Excisionase Xis {Bacteriophage lambda [TaxId: 10710]}
Probab=9.69 E-value=78 Score=16.87 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHh
Q 040305 18 PSEEALKRWRSA 29 (80)
Q Consensus 18 ~s~ealrRWR~A 29 (80)
||..+|++|-++
T Consensus 16 Ps~~TL~~~ak~ 27 (55)
T d1rh6a_ 16 RSLETVRRWVRE 27 (55)
T ss_dssp CCHHHHHHHHHT
T ss_pred CCHHHHHHHHHc
Confidence 788999999998
No 2
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.57 E-value=1.2e+02 Score=16.01 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=17.8
Q ss_pred hccccccccccccchhhHHHhHHHHHHhh
Q 040305 35 NRRRRFCMVTNLANHAEARDHKLKIQVLF 63 (80)
Q Consensus 35 N~~RRFr~~adL~k~~~~~~~rr~i~~ki 63 (80)
++.||..+...+......+..+.-+.+-+
T Consensus 2 ~~~RR~~~~i~v~y~~d~~~v~~il~~~~ 30 (101)
T d2vv5a2 2 EPVRRNEFIIGVAYDSDIDQVKQILTNII 30 (101)
T ss_dssp SSEEEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEccCCCHHHHHHHHHHHH
Confidence 56777777777766666555555444433
No 3
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.14 E-value=1.3e+02 Score=14.68 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=7.1
Q ss_pred CCCCCCccCC
Q 040305 2 FFNSEDFDVQ 11 (80)
Q Consensus 2 ~~~~~~Fdv~ 11 (80)
+||+.+||.+
T Consensus 18 SYL~~~Fd~~ 27 (36)
T d1d4ua2 18 SYLMDHFDLP 27 (36)
T ss_dssp SSSTTTTSCC
T ss_pred HHHHHcCCch
Confidence 4677788865
No 4
>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.01 E-value=1.3e+02 Score=19.23 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHhh
Q 040305 18 PSEEALKRWRSAC 30 (80)
Q Consensus 18 ~s~ealrRWR~A~ 30 (80)
...|+|+||.++.
T Consensus 19 ~~DESL~kwKe~L 31 (179)
T d1ds6b_ 19 KDDESLIKYKKTL 31 (179)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cChhHHHHHHHHh
Confidence 3558999999984
No 5
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.28 E-value=2.2e+02 Score=14.36 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHh
Q 040305 17 HPSEEALKRWRSA 29 (80)
Q Consensus 17 ~~s~ealrRWR~A 29 (80)
|++++...+|-+|
T Consensus 99 a~s~ee~~~Wi~a 111 (116)
T d1x1ga1 99 ASSKAERAEWIEA 111 (116)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4678889999888
No 6
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.21 E-value=2.7e+02 Score=13.72 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHhhhhhhhc
Q 040305 18 PSEEALKRWRSACAIVKNR 36 (80)
Q Consensus 18 ~s~ealrRWR~A~~lViN~ 36 (80)
.+++....|=.|..-++.+
T Consensus 83 ~s~~e~~~W~~aI~~ai~~ 101 (103)
T d1eaza_ 83 DSPEEMHSWIKAVSGAIVA 101 (103)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5788889998886444443
No 7
>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=4.14 E-value=1.8e+02 Score=18.52 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHhhhhhhhccccccccccccchhh
Q 040305 18 PSEEALKRWRSACAIVKNRRRRFCMVTNLANHAE 51 (80)
Q Consensus 18 ~s~ealrRWR~A~~lViN~~RRFr~~adL~k~~~ 51 (80)
|||..-|=+-+..+..+|+.=+.-++-.|.-..|
T Consensus 32 PSEt~eRmm~RlLAfal~a~e~L~FtkGLs~~dE 65 (179)
T d2ot9a1 32 PSETEERMTVRLLAYAFWYNEQLAFGRGLSDVDE 65 (179)
T ss_dssp TTSCHHHHHHHHHHHHHTCCTTEEECCGGGCTTS
T ss_pred CCccHHHHHHHHHHHHhcccccccccCCCCCCCC
Confidence 6666655576766799999998888877665544
No 8
>d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus subtilis [TaxId: 1423]}
Probab=4.03 E-value=2e+02 Score=16.53 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHhh
Q 040305 18 PSEEALKRWRSAC 30 (80)
Q Consensus 18 ~s~ealrRWR~A~ 30 (80)
.+++++..||.-.
T Consensus 64 ~d~~ai~~Wr~~~ 76 (108)
T d2go8a1 64 DSMDAINHWRHHT 76 (108)
T ss_dssp SCHHHHHHHHHHC
T ss_pred CCHHHHHHHHhCH
Confidence 3789999999874
No 9
>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.83 E-value=66 Score=16.66 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=4.3
Q ss_pred HHHhhhhh
Q 040305 26 WRSACAIV 33 (80)
Q Consensus 26 WR~A~~lV 33 (80)
||+| |+.
T Consensus 4 WR~A-Gls 10 (47)
T d2v7qi1 4 WRQA-GLS 10 (47)
T ss_dssp TTTT-TCC
T ss_pred HHHh-hhh
Confidence 7777 543
No 10
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.81 E-value=1.7e+02 Score=13.42 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=5.8
Q ss_pred HHHHHHhh
Q 040305 23 LKRWRSAC 30 (80)
Q Consensus 23 lrRWR~A~ 30 (80)
=|+|++++
T Consensus 28 cr~w~~l~ 35 (41)
T d1fs1a1 28 CKRWYRLA 35 (41)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHh
Confidence 37798874
Done!