BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040306
         (139 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
          Length = 241

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 14/149 (9%)

Query: 5   FASNPLSLNVTDPAFESWLRDSGYLESLDTATTTSATAVTTASTKETA----------TA 54
           F+ NPLSL+V DPAFESWLRDSGYLE LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT NPF+KL+ DDFS +T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSL 139
             ++RVHEN+KR+ARNYA+LFI+FFAC+L
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACAL 151


>sp|A8G4Z1|ACSF_PROM2 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
           OS=Prochlorococcus marinus (strain MIT 9215) GN=acsF
           PE=3 SV=1
          Length = 390

 Score = 35.4 bits (80), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 19  FESWLRDSG-YLESLDTATTTSATAVTTASTKETATATTITHSLLHYLYTFISLLTANPF 77
           FE+W +D   + +  D        +V + S K T   +T TH L  Y + F   L  +PF
Sbjct: 204 FENWCQDENRHGDFFDALMKAQPRSVKSLSNKITIGGSTFTHPLFDYFHRFRYFLNNHPF 263

Query: 78  A 78
            
Sbjct: 264 V 264


>sp|Q6Y5M6|PMIP_COPDI Mitochondrial intermediate peptidase OS=Coprinellus disseminatus
           GN=OCT1 PE=3 SV=1
          Length = 773

 Score = 32.3 bits (72), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 43  VTTASTKETATATTITHSLLHYLYTFISLLTANPFAKLTTDDFSANTPSWTREFIGALGS 102
           +  AS   T    ++  +LL        L+    FA LT DD  A TP     F+ AL  
Sbjct: 297 IYIASNSSTPEQISVLEALLRKRAELAQLIGRPSFAHLTLDDKMAKTPENVSNFLDALMD 356

Query: 103 YSFP---SSPHTLKLR--VHENV 120
           ++ P    + HTL  R   H N+
Sbjct: 357 HTRPFARRALHTLAQRKQAHHNL 379


>sp|Q12335|PST2_YEAST Protoplast secreted protein 2 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=PST2 PE=1 SV=1
          Length = 198

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 60  SLLHYLYTFISLLTANPFAKLTT-DDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
           +L H+   F+ L   N FA+LT  D+    +P       G+ GS     SP  L+L+VHE
Sbjct: 130 TLAHHGIIFVPLGYKNVFAELTNMDEVHGGSPWGAGTIAGSDGS----RSPSALELQVHE 185


>sp|Q54XK1|PRAFA_DICDI PRA1 family protein 1 OS=Dictyostelium discoideum GN=prafA PE=3
           SV=1
          Length = 235

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 89  TPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILF 134
           T  W R F+G+   Y  P+   T   R+ ENV  +  NY  LF+ F
Sbjct: 100 TRDW-RSFVGSRQQYGLPNIKDTTS-RIKENVVYFQSNYLILFLCF 143


>sp|A2C7T5|CHLB_PROM3 Light-independent protochlorophyllide reductase subunit B
           OS=Prochlorococcus marinus (strain MIT 9303) GN=chlB
           PE=3 SV=1
          Length = 536

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 75  NPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYAR 125
           NP  +  TD  S  +P WT E     G       P  ++ +V  N ++YAR
Sbjct: 470 NPSTQSNTDSSSEESPLWTPE-----GEAELAKIPFFVRGKVRRNTEKYAR 515


>sp|Q6VMB4|PMIP_LEUGO Mitochondrial intermediate peptidase OS=Leucoagaricus gongylophorus
           GN=OCT1 PE=3 SV=1
          Length = 760

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 71  LLTANPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLK 113
           L+  + FA +T DD  A TP     F+GAL   + P +   LK
Sbjct: 311 LVGRSSFAHMTLDDKMAKTPENVMNFLGALIGQTRPFARRALK 353


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.127    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,674,116
Number of Sequences: 539616
Number of extensions: 1539375
Number of successful extensions: 6960
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 6424
Number of HSP's gapped (non-prelim): 446
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)