Query 040306
Match_columns 139
No_of_seqs 19 out of 21
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 07:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03208 PRA1: PRA1 family pro 99.2 3.1E-11 6.6E-16 89.4 4.2 52 86-139 5-56 (153)
2 KOG3142 Prenylated rab accepto 97.2 0.0003 6.6E-09 57.1 3.7 43 90-134 38-80 (187)
3 COG5130 YIP3 Prenylated rab ac 89.6 0.42 9.2E-06 38.8 3.5 39 93-132 32-70 (169)
4 COG5144 TFB2 RNA polymerase II 59.2 3 6.6E-05 38.0 -0.1 27 1-31 48-74 (447)
5 PF14664 RICTOR_N: Rapamycin-i 42.6 23 0.00049 31.0 2.7 54 83-136 266-331 (371)
6 PF03374 ANT: Phage antirepres 39.7 18 0.00038 25.4 1.3 20 12-31 34-53 (111)
7 PF10092 DUF2330: Uncharacteri 32.8 24 0.00052 31.2 1.3 12 17-28 139-150 (348)
8 PF10489 RFPL3_antisense: Ret 32.6 17 0.00038 28.3 0.4 42 75-124 3-44 (124)
9 PF15178 TOM_sub5: Mitochondri 29.1 79 0.0017 21.5 3.0 27 108-134 12-38 (51)
10 COG3645 Uncharacterized phage- 28.5 32 0.00068 27.3 1.2 20 13-32 58-77 (135)
11 TIGR02366 DHAK_reg probable di 27.5 24 0.00053 25.6 0.4 25 65-89 9-33 (176)
12 PF11639 HapK: REDY-like prote 27.5 26 0.00056 26.7 0.5 16 13-28 13-28 (104)
13 KOG3471 RNA polymerase II tran 26.8 21 0.00045 33.2 -0.0 30 1-34 55-84 (465)
14 PRK10699 phosphatidylglyceroph 26.0 31 0.00068 29.0 0.8 25 88-112 142-166 (244)
15 PF08260 Kinin: Insect kinin p 25.7 14 0.0003 16.9 -0.7 7 16-22 1-7 (8)
16 PF09921 DUF2153: Uncharacteri 25.5 34 0.00074 26.9 0.9 9 17-25 47-55 (126)
17 TIGR02742 TrbC_Ftype type-F co 24.5 42 0.00091 25.7 1.2 17 10-26 5-21 (130)
18 TIGR03162 ribazole_cobC alpha- 24.2 45 0.00098 24.3 1.3 48 79-127 86-135 (177)
19 PF09673 TrbC_Ftype: Type-F co 24.1 44 0.00095 24.4 1.2 17 10-26 4-20 (113)
20 PF01277 Oleosin: Oleosin; In 24.1 63 0.0014 24.9 2.1 23 105-127 89-114 (118)
21 PF10905 DUF2695: Protein of u 23.6 52 0.0011 22.1 1.4 16 13-28 29-44 (53)
22 TIGR03687 pupylate_cterm ubiqu 21.8 61 0.0013 20.3 1.3 14 115-128 15-28 (33)
23 cd03385 PAP2_BcrC_like PAP2_li 21.4 1.6E+02 0.0035 21.5 3.8 14 99-112 73-86 (144)
24 KOG4050 Glutamate transporter 20.8 94 0.002 25.9 2.6 44 94-137 23-68 (188)
25 PF02791 DDT: DDT domain; Int 20.4 66 0.0014 21.0 1.4 26 58-86 7-32 (61)
No 1
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=99.16 E-value=3.1e-11 Score=89.40 Aligned_cols=52 Identities=33% Similarity=0.583 Sum_probs=47.8
Q ss_pred CCCCCCcchhhhccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHHHHHhhcC
Q 040306 86 SANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL 139 (139)
Q Consensus 86 ~~~t~~Wtr~F~g~~~SYSfP~s~~qarlRv~ENvkrYarNYa~L~il~FAc~L 139 (139)
..+..|| +||+ +.++|+.|++..|++.|+.+|+.+|..||+.+++++++++|
T Consensus 5 ~~~~Rpw-~eF~-~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~l 56 (153)
T PF03208_consen 5 LSPLRPW-REFF-DTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFL 56 (153)
T ss_pred cCCCCCH-HHHh-CccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899 9999 78999999999999999999999999999999999988764
No 2
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0003 Score=57.12 Aligned_cols=43 Identities=23% Similarity=0.501 Sum_probs=37.5
Q ss_pred CCcchhhhccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHHHH
Q 040306 90 PSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILF 134 (139)
Q Consensus 90 ~~Wtr~F~g~~~SYSfP~s~~qarlRv~ENvkrYarNYa~L~il~ 134 (139)
.|| +||+- ..+.|.|++..+|..||--|+.+|--||+.++.++
T Consensus 38 RpW-~ef~d-~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~ 80 (187)
T KOG3142|consen 38 RPW-SEFFD-RSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAIL 80 (187)
T ss_pred CCH-HHHHc-ccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 349 99984 57899999999999999999999999999877554
No 3
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=89.60 E-value=0.42 Score=38.80 Aligned_cols=39 Identities=33% Similarity=0.598 Sum_probs=33.4
Q ss_pred chhhhccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHH
Q 040306 93 TREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFI 132 (139)
Q Consensus 93 tr~F~g~~~SYSfP~s~~qarlRv~ENvkrYarNYa~L~i 132 (139)
+||||-. +--|-|....+|+.||--|.+|+--||..+..
T Consensus 32 ~~eFfni-~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia 70 (169)
T COG5130 32 TREFFNI-GRISVPQNFNEAQSRVFANLDRFSSNYLAIIA 70 (169)
T ss_pred HHHHhcc-ccccCCcchHHHHHHHHhhHHHHhhhHHHHHH
Confidence 5899964 34688999999999999999999999987654
No 4
>COG5144 TFB2 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]
Probab=59.21 E-value=3 Score=37.99 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCCcccCCCcccccCchHHHHHhhhcCchhh
Q 040306 1 MGKVFASNPLSLNVTDPAFESWLRDSGYLES 31 (139)
Q Consensus 1 mgm~Fs~NPLSLSvp~~afe~WlrDsGyLe~ 31 (139)
|.|.|++||.||+ +++.|++.++-+-.
T Consensus 48 m~mlfn~~~v~ll----d~d~wik~~~Ki~~ 74 (447)
T COG5144 48 MDMLFNSHSVSLL----DEDEWIKETLKILL 74 (447)
T ss_pred HHHHcCCCCcchh----hHHHHHhhhhHHHH
Confidence 7899999998775 89999999886543
No 5
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=42.63 E-value=23 Score=30.99 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=34.7
Q ss_pred cccCCCCCCcchhhhccCccccCCCChhhhhhh---------hh---hhHHHHhhhhHHHHHHHHh
Q 040306 83 DDFSANTPSWTREFIGALGSYSFPSSPHTLKLR---------VH---ENVKRYARNYASLFILFFA 136 (139)
Q Consensus 83 dDl~~~t~~Wtr~F~g~~~SYSfP~s~~qarlR---------v~---ENvkrYarNYa~L~il~FA 136 (139)
|=|.-++|+|+.+|....+.-.+.+-..+++++ .. ++-.....||.+|.+.+|.
T Consensus 266 dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili 331 (371)
T PF14664_consen 266 DLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILI 331 (371)
T ss_pred HHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHH
Confidence 346678899999999755554444433333333 11 1345678899999988874
No 6
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=39.70 E-value=18 Score=25.36 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.6
Q ss_pred cccCchHHHHHhhhcCchhh
Q 040306 12 LNVTDPAFESWLRDSGYLES 31 (139)
Q Consensus 12 LSvp~~afe~WlrDsGyLe~ 31 (139)
|.+++..|-+||||.|++-.
T Consensus 34 L~i~~~~l~~~Lr~~g~l~~ 53 (111)
T PF03374_consen 34 LGIGRNKLFQWLREKGWLYR 53 (111)
T ss_pred hCCCHHHHHHHHHhCCceEE
Confidence 47888999999999999876
No 7
>PF10092 DUF2330: Uncharacterized protein conserved in bacteria (DUF2330); InterPro: IPR019283 Members of this family of hypothetical bacterial proteins have no known function.
Probab=32.78 E-value=24 Score=31.23 Aligned_cols=12 Identities=50% Similarity=1.293 Sum_probs=11.1
Q ss_pred hHHHHHhhhcCc
Q 040306 17 PAFESWLRDSGY 28 (139)
Q Consensus 17 ~afe~WlrDsGy 28 (139)
.++++||+|+||
T Consensus 139 ~gL~~WL~~ngY 150 (348)
T PF10092_consen 139 DGLRTWLRDNGY 150 (348)
T ss_pred HHHHHHHHHcCC
Confidence 579999999999
No 8
>PF10489 RFPL3_antisense: Ret finger protein-like 3 antisense; InterPro: IPR019524 This short transcript is purported to be the antisense protein of exon 2 of the ret-finger protein-like 3 (RFPL3) gene, however this was not confirmed. Since RFPL3 is expressed in testis, the suggestion is that it may have a role in the antisense regulation of the RFPL genes. RFPL transcripts encode proteins with tripartite structure of RING finger, coiled-coil, and B30-2 domains, which are characteristic of the RING-B30 family. Each of these domains is thought to mediate protein-protein interactions by promoting homo- or heterodimerisation [].
Probab=32.62 E-value=17 Score=28.33 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=26.6
Q ss_pred CcCccccccccCCCCCCcchhhhccCccccCCCChhhhhhhhhhhHHHHh
Q 040306 75 NPFAKLTTDDFSANTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYA 124 (139)
Q Consensus 75 nPfa~LT~dDl~~~t~~Wtr~F~g~~~SYSfP~s~~qarlRv~ENvkrYa 124 (139)
||...|- +|-++|.+-|-++ +-||-- ...-+--++||++||+
T Consensus 3 ~~~g~iK-gDskkpSKk~vkr-----~PyStT--kVTs~sTiNEilRRYa 44 (124)
T PF10489_consen 3 SPAGCIK-GDSKKPSKKHVKR-----EPYSTT--KVTSGSTINEILRRYA 44 (124)
T ss_pred Ccccccc-ccccCchHHHhhc-----CCccee--eeccCcchhhhhhhhe
Confidence 3444443 6889999999433 445432 2233456899999997
No 9
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=29.06 E-value=79 Score=21.49 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.0
Q ss_pred ChhhhhhhhhhhHHHHhhhhHHHHHHH
Q 040306 108 SPHTLKLRVHENVKRYARNYASLFILF 134 (139)
Q Consensus 108 s~~qarlRv~ENvkrYarNYa~L~il~ 134 (139)
.+.+.|.||.|.|---.||++..+.+.
T Consensus 12 DPeE~k~kmR~dvissvrnFliyVALl 38 (51)
T PF15178_consen 12 DPEEMKRKMREDVISSVRNFLIYVALL 38 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999888765
No 10
>COG3645 Uncharacterized phage-encoded protein [Function unknown]
Probab=28.47 E-value=32 Score=27.26 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=16.8
Q ss_pred ccCchHHHHHhhhcCchhhh
Q 040306 13 NVTDPAFESWLRDSGYLESL 32 (139)
Q Consensus 13 Svp~~afe~WlrDsGyLe~l 32 (139)
.+.+..|-.||||+||+=..
T Consensus 58 kige~~l~~~L~e~~~l~~~ 77 (135)
T COG3645 58 KIGENRLFAWLRENKYLIKR 77 (135)
T ss_pred ccCHHHHHHHHHHCCEEEEc
Confidence 46778899999999998665
No 11
>TIGR02366 DHAK_reg probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.
Probab=27.53 E-value=24 Score=25.64 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=21.2
Q ss_pred HHHHHhhhhcCcCccccccccCCCC
Q 040306 65 LYTFISLLTANPFAKLTTDDFSANT 89 (139)
Q Consensus 65 ~~t~~sl~tlnPfa~LT~dDl~~~t 89 (139)
..++..||.-.||.++|++|+.+..
T Consensus 9 ~~a~~~Ll~~k~~~~ITV~~I~~~A 33 (176)
T TIGR02366 9 AKAFKDLMEVQAFSKISVSDIMSTA 33 (176)
T ss_pred HHHHHHHHHHCCCccCCHHHHHHHh
Confidence 3567899999999999999997754
No 12
>PF11639 HapK: REDY-like protein HapK; InterPro: IPR021667 This family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY. The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C-terminal tail which it uses for dimer formation []. The surface of HapK has a deep cavity with consists of a kinked helix and a beta-four strand. HapK could be involved in prodigiosin biosynthesis, specifically the binding of a bipyrrole intermediate such as HBM or MBM []. ; PDB: 2JDJ_B.
Probab=27.49 E-value=26 Score=26.73 Aligned_cols=16 Identities=44% Similarity=1.020 Sum_probs=14.0
Q ss_pred ccCchHHHHHhhhcCc
Q 040306 13 NVTDPAFESWLRDSGY 28 (139)
Q Consensus 13 Svp~~afe~WlrDsGy 28 (139)
.+...+||.|+|++-|
T Consensus 13 gv~~~~fe~Wv~~tDy 28 (104)
T PF11639_consen 13 GVDPAAFERWVRETDY 28 (104)
T ss_dssp GGGHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHhcch
Confidence 4678899999999887
No 13
>KOG3471 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription; Replication, recombination and repair]
Probab=26.85 E-value=21 Score=33.21 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=24.6
Q ss_pred CCCcccCCCcccccCchHHHHHhhhcCchhhhhh
Q 040306 1 MGKVFASNPLSLNVTDPAFESWLRDSGYLESLDT 34 (139)
Q Consensus 1 mgm~Fs~NPLSLSvp~~afe~WlrDsGyLe~ld~ 34 (139)
|-|.|+++| ||..+++.|++-+|-.|.-+.
T Consensus 55 m~MLf~~~p----VP~a~~~~Wv~~~~tk~q~ea 84 (465)
T KOG3471|consen 55 MQMLFKDQP----VPLADVDLWVKVEETKEQEEA 84 (465)
T ss_pred HHHHhcCCC----ccHHHHHHHhhhhhHHHHHHH
Confidence 568899887 688899999999888776554
No 14
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=26.04 E-value=31 Score=29.00 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=20.0
Q ss_pred CCCCcchhhhccCccccCCCChhhh
Q 040306 88 NTPSWTREFIGALGSYSFPSSPHTL 112 (139)
Q Consensus 88 ~t~~Wtr~F~g~~~SYSfP~s~~qa 112 (139)
+.|+|-++---...+|||||+-++.
T Consensus 142 ~~~~w~~~hw~~~~gySFPSGHa~~ 166 (244)
T PRK10699 142 NIPQWLRSHWQKETGFAFPSGHTMF 166 (244)
T ss_pred cCCHHHHhccCCCCCCCCChHHHHH
Confidence 6788866665667899999998884
No 15
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=25.72 E-value=14 Score=16.90 Aligned_cols=7 Identities=86% Similarity=1.853 Sum_probs=4.9
Q ss_pred chHHHHH
Q 040306 16 DPAFESW 22 (139)
Q Consensus 16 ~~afe~W 22 (139)
+|+|.+|
T Consensus 1 ~pafnsw 7 (8)
T PF08260_consen 1 DPAFNSW 7 (8)
T ss_pred Ccccccc
Confidence 4677777
No 16
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.51 E-value=34 Score=26.88 Aligned_cols=9 Identities=56% Similarity=1.335 Sum_probs=8.2
Q ss_pred hHHHHHhhh
Q 040306 17 PAFESWLRD 25 (139)
Q Consensus 17 ~afe~WlrD 25 (139)
.|||+||.|
T Consensus 47 KaFd~WLqd 55 (126)
T PF09921_consen 47 KAFDQWLQD 55 (126)
T ss_pred HHHHHHHcC
Confidence 589999999
No 17
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=24.48 E-value=42 Score=25.71 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=15.6
Q ss_pred cccccCchHHHHHhhhc
Q 040306 10 LSLNVTDPAFESWLRDS 26 (139)
Q Consensus 10 LSLSvp~~afe~WlrDs 26 (139)
.|+|.|++.+.+|++|.
T Consensus 5 vS~SMP~~~Lk~l~~~a 21 (130)
T TIGR02742 5 VSFSMPEPLLKQLLDQA 21 (130)
T ss_pred EEcCCCHHHHHHHHHHH
Confidence 48999999999999994
No 18
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=24.21 E-value=45 Score=24.33 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=30.3
Q ss_pred cccccccCCCCCCcchhhhccCccccCC--CChhhhhhhhhhhHHHHhhhh
Q 040306 79 KLTTDDFSANTPSWTREFIGALGSYSFP--SSPHTLKLRVHENVKRYARNY 127 (139)
Q Consensus 79 ~LT~dDl~~~t~~Wtr~F~g~~~SYSfP--~s~~qarlRv~ENvkrYarNY 127 (139)
.++.+++.+.-|.| ..|.-....|.+| .|..|++.||..-+++....+
T Consensus 86 g~~~~~~~~~~~~~-~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~ 135 (177)
T TIGR03162 86 GRSWDEIPEAYPEL-DAWAADWQHARPPGGESFADFYQRVSEFLEELLKAH 135 (177)
T ss_pred CCCHHHHHHhCHHH-HHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44555555443334 3344333345555 789999999999998887543
No 19
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=24.12 E-value=44 Score=24.41 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=15.4
Q ss_pred cccccCchHHHHHhhhc
Q 040306 10 LSLNVTDPAFESWLRDS 26 (139)
Q Consensus 10 LSLSvp~~afe~WlrDs 26 (139)
.|+|+|++++.++++|.
T Consensus 4 vS~SMP~~~L~~l~~~a 20 (113)
T PF09673_consen 4 VSFSMPDASLRNLLKQA 20 (113)
T ss_pred EECCCCHHHHHHHHHHH
Confidence 48999999999999983
No 20
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=24.08 E-value=63 Score=24.89 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=17.8
Q ss_pred CCCChhhhhhhhhh---hHHHHhhhh
Q 040306 105 FPSSPHTLKLRVHE---NVKRYARNY 127 (139)
Q Consensus 105 fP~s~~qarlRv~E---NvkrYarNY 127 (139)
-|...++||.|++| .++++++-|
T Consensus 89 ~~~q~d~Ak~ri~d~a~~v~~kake~ 114 (118)
T PF01277_consen 89 GPDQLDYAKRRIADTASYVGQKAKEV 114 (118)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788999999985 567777655
No 21
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=23.64 E-value=52 Score=22.09 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.3
Q ss_pred ccCchHHHHHhhhcCc
Q 040306 13 NVTDPAFESWLRDSGY 28 (139)
Q Consensus 13 Svp~~afe~WlrDsGy 28 (139)
+++++++..||+..|-
T Consensus 29 ~~~~~~vl~~l~~nGg 44 (53)
T PF10905_consen 29 QLDWEDVLEWLRENGG 44 (53)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 5678999999999873
No 22
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=21.76 E-value=61 Score=20.35 Aligned_cols=14 Identities=14% Similarity=0.510 Sum_probs=11.9
Q ss_pred hhhhhHHHHhhhhH
Q 040306 115 RVHENVKRYARNYA 128 (139)
Q Consensus 115 Rv~ENvkrYarNYa 128 (139)
=+.+|...|+|+|+
T Consensus 15 vLe~NAe~FV~~fV 28 (33)
T TIGR03687 15 VLESNAEEFVRGFV 28 (33)
T ss_pred HHHHhHHHHHHHHH
Confidence 36789999999996
No 23
>cd03385 PAP2_BcrC_like PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.
Probab=21.44 E-value=1.6e+02 Score=21.48 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=10.8
Q ss_pred cCccccCCCChhhh
Q 040306 99 ALGSYSFPSSPHTL 112 (139)
Q Consensus 99 ~~~SYSfP~s~~qa 112 (139)
...+|||||+-++.
T Consensus 73 ~~~~~SFPSgH~~~ 86 (144)
T cd03385 73 HAADSSFPSDHTTL 86 (144)
T ss_pred CCCCCCCCcHHHHH
Confidence 45689999987664
No 24
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=20.83 E-value=94 Score=25.92 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=32.6
Q ss_pred hhhhccCccccCCC--ChhhhhhhhhhhHHHHhhhhHHHHHHHHhh
Q 040306 94 REFIGALGSYSFPS--SPHTLKLRVHENVKRYARNYASLFILFFAC 137 (139)
Q Consensus 94 r~F~g~~~SYSfP~--s~~qarlRv~ENvkrYarNYa~L~il~FAc 137 (139)
.+|+-.++-|.=|. ....=--||-.|+--|--||...||..|+.
T Consensus 23 ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l 68 (188)
T KOG4050|consen 23 DDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLL 68 (188)
T ss_pred HHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45555555566554 344445799999999999999999988864
No 25
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=20.42 E-value=66 Score=21.02 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=21.5
Q ss_pred hhhhhhHHHHHHhhhhcCcCccccccccC
Q 040306 58 THSLLHYLYTFISLLTANPFAKLTTDDFS 86 (139)
Q Consensus 58 ~~s~~~~~~t~~sl~tlnPfa~LT~dDl~ 86 (139)
...+..++.++...|.+.|| |.|||-
T Consensus 7 ~L~v~~Fl~~F~~~L~L~~f---tlddf~ 32 (61)
T PF02791_consen 7 LLMVWEFLNTFGEVLGLSPF---TLDDFE 32 (61)
T ss_pred HHHHHHHHHHHHHHHcCCcC---CHHHHH
Confidence 44567788999999999999 888874
Done!