Query 040306
Match_columns 139
No_of_seqs 19 out of 21
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 11:13:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eap_A Lymphocyte cytosolic pr 81.0 0.75 2.6E-05 33.2 2.0 32 2-33 7-43 (90)
2 1vyk_A Oxygen-evolving enhance 30.6 35 0.0012 25.8 2.9 26 105-130 41-80 (149)
3 3fpn_B Geobacillus stearotherm 25.7 32 0.0011 23.8 1.8 27 4-30 9-39 (106)
4 2jdj_A HAPK, REDY-like protein 25.7 18 0.00063 26.3 0.5 16 13-28 13-28 (105)
5 2ovg_A Phage lambda CRO; trans 24.3 24 0.00081 22.7 0.8 20 12-31 23-42 (66)
6 1ci4_A Protein (barrier-TO-aut 19.1 36 0.0012 24.2 0.9 19 10-28 50-69 (89)
7 2hba_A BL17, 50S ribosomal pro 18.0 31 0.001 22.0 0.3 7 122-128 24-30 (52)
8 1rij_A E6APN1 peptide; Trp-CAG 16.2 53 0.0018 18.7 1.0 12 16-27 3-14 (26)
9 3cxj_A Uncharacterized protein 13.9 62 0.0021 25.0 1.2 17 11-29 2-18 (165)
10 1btq_A BAND 3 anion transport 13.8 83 0.0028 17.6 1.4 12 128-139 4-15 (26)
No 1
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.97 E-value=0.75 Score=33.16 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCcccCCCccccc---CchHHHHHhhhcCc--hhhhh
Q 040306 2 GKVFASNPLSLNV---TDPAFESWLRDSGY--LESLD 33 (139)
Q Consensus 2 gm~Fs~NPLSLSv---p~~afe~WlrDsGy--Le~ld 33 (139)
||+|..=|.-..| -..++..|||+.|| .|.+-
T Consensus 7 ~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~cd~lv 43 (90)
T 2eap_A 7 GMALRNVPFRSEVLGWDPDSLADYFKKLNYKDCEKAV 43 (90)
T ss_dssp CSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHHHHHHH
T ss_pred cccccccccCccccccCHHHHHHHHHHcCCchHHHHH
Confidence 7887765554444 35789999999999 55553
No 2
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=30.59 E-value=35 Score=25.78 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.8
Q ss_pred CCCChhhhhhhhhhhHHH--------------HhhhhHHH
Q 040306 105 FPSSPHTLKLRVHENVKR--------------YARNYASL 130 (139)
Q Consensus 105 fP~s~~qarlRv~ENvkr--------------YarNYa~L 130 (139)
=|-++.+|.-|+.|+.++ |+|||+.+
T Consensus 41 ~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~ 80 (149)
T 1vyk_A 41 QPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL 80 (149)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 367899999999999987 88888765
No 3
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=25.75 E-value=32 Score=23.80 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=20.0
Q ss_pred cccCCCcccccCc----hHHHHHhhhcCchh
Q 040306 4 VFASNPLSLNVTD----PAFESWLRDSGYLE 30 (139)
Q Consensus 4 ~Fs~NPLSLSvp~----~afe~WlrDsGyLe 30 (139)
.|..++|.|.+.+ .++.+||.+.||-.
T Consensus 9 ~~~~~~l~l~~G~~i~~~~l~~~L~~~GY~r 39 (106)
T 3fpn_B 9 EYRELVVSLRVGMEIERNALLRRLVDIQYDR 39 (106)
T ss_dssp ----CCEEEETTCBCCHHHHHHHHHHTTCEE
T ss_pred HHhhCCeEEECCCCcCHHHHHHHHHHcCCEE
Confidence 4778999998776 79999999999953
No 4
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=25.75 E-value=18 Score=26.26 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=14.0
Q ss_pred ccCchHHHHHhhhcCc
Q 040306 13 NVTDPAFESWLRDSGY 28 (139)
Q Consensus 13 Svp~~afe~WlrDsGy 28 (139)
.++..+||+|.|+..|
T Consensus 13 g~d~~aFe~w~~evD~ 28 (105)
T 2jdj_A 13 VAQADAFEFWVQNVDY 28 (105)
T ss_dssp GGGHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHhchh
Confidence 5678999999999877
No 5
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=24.28 E-value=24 Score=22.70 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=16.9
Q ss_pred cccCchHHHHHhhhcCchhh
Q 040306 12 LNVTDPAFESWLRDSGYLES 31 (139)
Q Consensus 12 LSvp~~afe~WlrDsGyLe~ 31 (139)
|.|.++++..|+|+.+.+++
T Consensus 23 L~vtQ~AVS~~ir~~r~v~L 42 (66)
T 2ovg_A 23 LGVYPSSINQAIHAGRKIFL 42 (66)
T ss_dssp HTSCHHHHHHHHHHTCEEEE
T ss_pred hCCCHHHHHHHHHhCCCcee
Confidence 78999999999998766655
No 6
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=19.06 E-value=36 Score=24.19 Aligned_cols=19 Identities=37% Similarity=0.807 Sum_probs=15.2
Q ss_pred cccccCchHHHHHhhhc-Cc
Q 040306 10 LSLNVTDPAFESWLRDS-GY 28 (139)
Q Consensus 10 LSLSvp~~afe~WlrDs-Gy 28 (139)
|.|.=+++-|..||+|. |.
T Consensus 50 L~l~kd~~~F~~WLk~~~ga 69 (89)
T 1ci4_A 50 LVLKKDEDLFREWLKDTCGA 69 (89)
T ss_dssp HHTTTCHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHhCc
Confidence 45566799999999997 65
No 7
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=18.03 E-value=31 Score=22.00 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=5.6
Q ss_pred HHhhhhH
Q 040306 122 RYARNYA 128 (139)
Q Consensus 122 rYarNYa 128 (139)
-|||||.
T Consensus 24 GYaRN~L 30 (52)
T 2hba_A 24 GYANNFL 30 (52)
T ss_dssp HHHHHTT
T ss_pred Cceehhh
Confidence 4999985
No 8
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=16.17 E-value=53 Score=18.65 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=9.1
Q ss_pred chHHHHHhhhcC
Q 040306 16 DPAFESWLRDSG 27 (139)
Q Consensus 16 ~~afe~WlrDsG 27 (139)
++-+-+||+|-|
T Consensus 3 qellgqwlkdgg 14 (26)
T 1rij_A 3 QELLGQWLKDGG 14 (26)
T ss_dssp HHHHHHHHHTTG
T ss_pred HHHHHHHHHcCC
Confidence 355779999976
No 9
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=13.90 E-value=62 Score=24.96 Aligned_cols=17 Identities=35% Similarity=0.894 Sum_probs=13.9
Q ss_pred ccccCchHHHHHhhhcCch
Q 040306 11 SLNVTDPAFESWLRDSGYL 29 (139)
Q Consensus 11 SLSvp~~afe~WlrDsGyL 29 (139)
||+ |..+..||+|.|..
T Consensus 2 ~~~--~~~I~~WL~eeG~~ 18 (165)
T 3cxj_A 2 SLS--QEMIKKWLDEEGFL 18 (165)
T ss_dssp -CH--HHHHHHHHHHTTCE
T ss_pred Ccc--HHHHHHHHHHcCce
Confidence 444 99999999999974
No 10
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=13.79 E-value=83 Score=17.64 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=8.7
Q ss_pred HHHHHHHHhhcC
Q 040306 128 ASLFILFFACSL 139 (139)
Q Consensus 128 a~L~il~FAc~L 139 (139)
++.++++|||.+
T Consensus 4 aa~~FlyFa~l~ 15 (26)
T 1btq_A 4 AAVIFIYFAALS 15 (26)
T ss_pred HHHHHHHHHHHc
Confidence 456788899863
Done!