Query 040306
Match_columns 139
No_of_seqs 19 out of 21
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 11:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nzea_ a.24.18.1 (A:) Oxygen- 27.6 21 0.0015 23.7 2.9 28 103-130 2-43 (112)
2 d1x5wa1 g.37.1.1 (A:8-35) Zinc 21.5 16 0.0012 19.8 1.1 19 99-120 6-24 (28)
3 d1ngka_ a.1.1.1 (A:) Protozoan 17.3 44 0.0032 21.0 2.8 15 11-25 75-89 (126)
4 d2gycf2 d.100.1.1 (F:1-58) Rib 17.0 13 0.00095 22.5 -0.0 7 122-128 24-30 (58)
5 d2hbaa1 d.100.1.1 (A:1-52) Rib 16.6 16 0.0012 21.7 0.3 7 122-128 24-30 (52)
6 d2j01i2 d.100.1.1 (I:1-55) Rib 16.2 17 0.0012 21.9 0.3 7 122-128 24-30 (55)
7 d1bdya_ b.7.1.1 (A:) Domain fr 14.8 22 0.0016 22.8 0.7 25 73-97 23-60 (123)
8 d1q79a2 d.218.1.3 (A:19-214) P 14.1 40 0.0029 24.2 2.0 24 7-30 5-35 (196)
9 d2iida1 c.3.1.2 (A:4-319,A:433 14.0 34 0.0025 22.3 1.4 19 7-25 1-19 (370)
10 d2iw1a1 c.87.1.8 (A:2-371) Lip 13.2 37 0.0027 22.6 1.5 16 112-127 339-354 (370)
No 1
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=27.63 E-value=21 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=20.9
Q ss_pred ccCCCChhhhhhhhhhhHHH--------------HhhhhHHH
Q 040306 103 YSFPSSPHTLKLRVHENVKR--------------YARNYASL 130 (139)
Q Consensus 103 YSfP~s~~qarlRv~ENvkr--------------YarNYa~L 130 (139)
|=-|-++.+|.-|+.|+.+| |+|||+.+
T Consensus 2 ~~~~l~p~eaa~ri~~sa~~L~~l~~lI~k~~W~~v~~~Lr~ 43 (112)
T d1nzea_ 2 YLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL 43 (112)
T ss_dssp CCCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33477888999999888765 67777765
No 2
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.53 E-value=16 Score=19.84 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=13.9
Q ss_pred cCccccCCCChhhhhhhhhhhH
Q 040306 99 ALGSYSFPSSPHTLKLRVHENV 120 (139)
Q Consensus 99 ~~~SYSfP~s~~qarlRv~ENv 120 (139)
.--|||-+ ..|.|||||-|
T Consensus 6 ~ecsyscs---skaalrvh~ri 24 (28)
T d1x5wa1 6 SECSYSCS---SKAALRIHERI 24 (28)
T ss_dssp SSSSCEES---SHHHHHHHHGG
T ss_pred cccccccC---cHHHHHHhhcc
Confidence 44578765 46889999965
No 3
>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
Probab=17.28 E-value=44 Score=20.95 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=12.4
Q ss_pred ccccCchHHHHHhhh
Q 040306 11 SLNVTDPAFESWLRD 25 (139)
Q Consensus 11 SLSvp~~afe~WlrD 25 (139)
-+.+.+.+|+.||..
T Consensus 75 ~~~I~~~~fd~wl~~ 89 (126)
T d1ngka_ 75 PFRISLIERDAWLRC 89 (126)
T ss_dssp TSCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 357889999999975
No 4
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=17.02 E-value=13 Score=22.52 Aligned_cols=7 Identities=57% Similarity=1.028 Sum_probs=5.4
Q ss_pred HHhhhhH
Q 040306 122 RYARNYA 128 (139)
Q Consensus 122 rYarNYa 128 (139)
-|||||.
T Consensus 24 GyaRNyL 30 (58)
T d2gycf2 24 GYARNFL 30 (58)
T ss_dssp TTTTTTT
T ss_pred chhHHHh
Confidence 3899985
No 5
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.61 E-value=16 Score=21.74 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=5.7
Q ss_pred HHhhhhH
Q 040306 122 RYARNYA 128 (139)
Q Consensus 122 rYarNYa 128 (139)
-|||||.
T Consensus 24 GyarN~L 30 (52)
T d2hbaa1 24 GYANNFL 30 (52)
T ss_dssp HHHHHTT
T ss_pred cchhHhh
Confidence 5999985
No 6
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=16.22 E-value=17 Score=21.94 Aligned_cols=7 Identities=71% Similarity=1.156 Sum_probs=5.7
Q ss_pred HHhhhhH
Q 040306 122 RYARNYA 128 (139)
Q Consensus 122 rYarNYa 128 (139)
-|||||.
T Consensus 24 GyaRN~L 30 (55)
T d2j01i2 24 GYARNYL 30 (55)
T ss_dssp HHHHHTT
T ss_pred hhHHHHh
Confidence 5999985
No 7
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.80 E-value=22 Score=22.83 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=17.3
Q ss_pred hcCcCcccccccc-----------CCC--CCCcchhhh
Q 040306 73 TANPFAKLTTDDF-----------SAN--TPSWTREFI 97 (139)
Q Consensus 73 tlnPfa~LT~dDl-----------~~~--t~~Wtr~F~ 97 (139)
+.|||.++.+++= +++ -|-|.-+|-
T Consensus 23 ~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~ 60 (123)
T d1bdya_ 23 ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFD 60 (123)
T ss_dssp SCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEE
T ss_pred CCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEE
Confidence 4799999998663 123 389976664
No 8
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.13 E-value=40 Score=24.16 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.4
Q ss_pred CCCcccccCchH-------HHHHhhhcCchh
Q 040306 7 SNPLSLNVTDPA-------FESWLRDSGYLE 30 (139)
Q Consensus 7 ~NPLSLSvp~~a-------fe~WlrDsGyLe 30 (139)
.-|+|+..|.+. ++++|++.|..|
T Consensus 5 T~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~p 35 (196)
T d1q79a2 5 TSPISLAAPKETDCLLTQKLVETLKPFGVFE 35 (196)
T ss_dssp SCCSCCCCCCHHHHHHHHHHHHHHGGGTCSC
T ss_pred CCCcccCCCChHHHHHHHHHHHHHHHcCCCC
Confidence 469999999988 999999988743
No 9
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=14.03 E-value=34 Score=22.26 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.5
Q ss_pred CCCcccccCchHHHHHhhh
Q 040306 7 SNPLSLNVTDPAFESWLRD 25 (139)
Q Consensus 7 ~NPLSLSvp~~afe~WlrD 25 (139)
-|||+=|+-++..|+||+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (370)
T d2iida1 1 RNPLAECFQENDYEEFLEI 19 (370)
T ss_dssp CCTTGGGGCCTTHHHHHHH
T ss_pred CCchHhhcCCccHHHHHHH
Confidence 3999999999999999873
No 10
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=13.17 E-value=37 Score=22.60 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=11.5
Q ss_pred hhhhhhhhHHHHhhhh
Q 040306 112 LKLRVHENVKRYARNY 127 (139)
Q Consensus 112 arlRv~ENvkrYarNY 127 (139)
.|.++.+|.|+|+++|
T Consensus 339 ~~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 339 LRMAWAENARHYADTQ 354 (370)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3556778888888765
Done!