BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040307
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 15/229 (6%)
Query: 71 PYTPTNIAFFPSEETLNPDIVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSF 129
P P + +F + + + GD +R+W D KS+L+ +
Sbjct: 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG----HQRTVRKV 67
Query: 130 DWAGFDTRRVATCSVDTTCVIWDIDREILE--TQLVAHDREVYDISWG-GFNVFASVSGD 186
W+ +A+ S D T IW +++ E T L H+ EV ++W N+ A+ S D
Sbjct: 68 AWSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 187 CSVRVF--DLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244
SV V+ D D+ + + QD + + W+ + +A+ D + +
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQD--VKHVVWHPSQ-ELLASASYDDTVKLYREEEDD 183
Query: 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG 293
L HE +V +++ P G+RL S +DD IW PG G
Sbjct: 184 WVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQG 231
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 89/240 (37%), Gaps = 65/240 (27%)
Query: 66 LIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSA 125
++ H ++ + PS+E L A+ D+++L+ +D + L ++++ +S A
Sbjct: 145 VLNSHTQDVKHVVWHPSQELL---ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 126 ITSFDWAGFDTRRVATCSVDTTCVIW----------------DIDREILETQLVAHDREV 169
FD +G +R+A+CS D T IW D + + T H R +
Sbjct: 202 ---FDPSG---QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255
Query: 170 YDISWGGF-NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT 228
YDI+W A+ GD ++RVF E+P D P F T
Sbjct: 256 YDIAWCQLTGALATACGDDAIRVFQ-----------EDPNSD---------PQQPTFSLT 295
Query: 229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288
+ H VN ++W P L S +DD W+ P
Sbjct: 296 AHLHQ-------------------AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFN-VFASVSGDCSVRVFD-LRDKE 198
+ S D T +WD+ + V H EVY +++ N S + +++++ L + +
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 199 RSTIIYENP------VQDCPLLRLEWNKADP--RFMATVGMDSNKVVVLDIRFPTNPVVV 250
S+ EN V+ P+++ NK P + A+VG D ++ V + F
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSA-NKVQPFAPYFASVGWDG-RLKVWNTNFQIR--YT 208
Query: 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM 310
HE +VN +S +P G+ + + D + LIW+++ Y P+ + +
Sbjct: 209 FKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTY------------PQREFDAG 255
Query: 311 AEINVVRWSPLELDWIAIA 329
+ IN + ++P +L W+A+
Sbjct: 256 STINQIAFNP-KLQWVAVG 273
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
Query: 66 LIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSA 125
++ +H ++ + PSE L ++ D++R+W+ +DD E ++LN ++ + +SS
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLAS---SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 126 ITSFDWAGFDTRRVATCSVDTTCVIWDI--DREILETQLV-------AHDREVYDISWGG 176
+ R+ + S D+T +W D E + + V H R+VY+++WG
Sbjct: 205 FDKTE----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF 260
Query: 177 FNVFASVSGDCSVRVFDLRDKE 198
+ ASV D + V++ D E
Sbjct: 261 NGLIASVGADGVLAVYEEVDGE 282
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)
Query: 136 TRRVATCSVDTTCVIW----DIDREILETQLVA----HDREVYDISWGGFNVF-ASVSGD 186
T +A S D+T IW DR E L+A H+ EV ++W + A+ S D
Sbjct: 70 TSLLAAGSFDSTVSIWAKEESADR-TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD 128
Query: 187 CSVRVF--DLRDKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243
SV ++ D +E I + + QD + W+ ++ +A+ D + D
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVK--HVIWHPSEA-LLASSSYDDTVRIWKDYDD 185
Query: 244 PTNPVVVLSKHEGSVNGISWAPLYGR-----RLCSVADDSRALIWEVVG 287
V VL+ HEG+V W+ + + RLCS +DDS +W+ +G
Sbjct: 186 DWECVAVLNGHEGTV----WSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 14/204 (6%)
Query: 131 WAGFDTRRVATCSVDTTCVIWDIDREILETQLV-------AHDREVYDISWGGFN--VFA 181
W + + + S D T +WDI+ E ++V H V D++W + +F
Sbjct: 187 WNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFG 246
Query: 182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241
SV+ D + ++D R S + + L +N +AT D V + D+
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 305
Query: 242 RFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301
R + H+ + + W+P L S D R +W++ G + + D
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG-EEQSAEDAEDG 364
Query: 302 EPELCY---QSMAEINVVRWSPLE 322
PEL + A+I+ W+P E
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNE 388
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 90 IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149
+ A+ ++ LW+I+ E K + + S+ + W + + D
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLX 255
Query: 150 IWDIDREILE--TQLV-AHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKERSTIIY 204
IWD + LV AH EV +S+ ++ F A+ S D +V ++DLR+ + +
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTNPVVVL 251
E+ + + ++ W+ + +A+ G D ++ V D+ P + +
Sbjct: 316 ESHKDE--IFQVHWSPHNETILASSGTD-RRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284
H ++ SW P +CSV++D+ IW+
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 175 GGFNVFASVSG--DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232
G F F SV+G +C ++ I +E V R + +P +AT
Sbjct: 105 GEFGGFGSVTGKIECEIK-----------INHEGEVN-----RARYXPQNPHIIATKTPS 148
Query: 233 SNKVVVLDIRFPT--------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284
S+ +V + P NP + L H+ G+SW L S +DD +W+
Sbjct: 149 SDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD 208
Query: 285 V-VGP 288
+ GP
Sbjct: 209 INAGP 213
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 99/233 (42%), Gaps = 23/233 (9%)
Query: 90 IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149
+ A+ ++ LW+I E K + + ++ + W + + D +
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 150 IWDI---DREILETQLVAHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKERSTIIY 204
IWD + + AH EV +S+ ++ F A+ S D +V ++DLR+ + +
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTNPVVVL 251
E+ + + +++W+ + +A+ G D ++ V D+ P + +
Sbjct: 314 ESHKDE--IFQVQWSPHNETILASSGTD-RRLNVWDLSKIGEEQSPEDAEDGPPELLFIH 370
Query: 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304
H ++ SW P +CSV++D+ +W++ Y + P G V+PE
Sbjct: 371 GGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED--PEGSVDPE 421
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 166 DREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF 225
D YD G F F SVSG + + I +E V R + +P
Sbjct: 94 DASHYDSEKGEFGGFGSVSGKIEIEI---------KINHEGEVN-----RARYMPQNPCI 139
Query: 226 MATVGMDSNKVVVLDIRFPT--------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277
+AT S+ +V + P+ NP + L H+ G+SW P L S +DD
Sbjct: 140 IATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDD 199
Query: 278 SRALIWEV 285
+W++
Sbjct: 200 HTICLWDI 207
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN-GGPSGDVEPELCY 307
+ + H V +SW L+ SVADD + +IW+ RS N PS V+
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDT-----RSNNTSKPSHSVDAH--- 272
Query: 308 QSMAEINVVRWSP 320
AE+N + ++P
Sbjct: 273 --TAEVNCLSFNP 283
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 103/239 (43%), Gaps = 30/239 (12%)
Query: 86 LNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144
LN +++ S D ++ LW+I+ E + + N + ++ + W + +
Sbjct: 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252
Query: 145 DTTCVIWDI---DREILETQLVAHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKER 199
D +IWD + + AH EV +S+ ++ F A+ S D +V ++DLR+ +
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTN 246
+E+ + + +++W+ + +A+ G D ++ V D+ P
Sbjct: 313 KLHSFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPE 369
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305
+ + H ++ SW P +CSV++D+ +W++ Y D EPE+
Sbjct: 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN--------DEEPEI 420
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 26/141 (18%)
Query: 157 ILETQLVAHDREV----YDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCP 212
I QL + D + YD G F F SV G + + I +E V
Sbjct: 85 IASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEI---------KINHEGEVN--- 132
Query: 213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV--------VVLSKHEGSVNGISWA 264
R + + +AT S+ +V + P+ P + L H+ G+SW
Sbjct: 133 --RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN 190
Query: 265 PLYGRRLCSVADDSRALIWEV 285
P L S +DD +W++
Sbjct: 191 PNLNGYLLSASDDHTICLWDI 211
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN-GGPSGDVEPELCYQ 308
+ + H V ++W L+ SVADD + +IW+ R+ N PS V+
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAH---- 276
Query: 309 SMAEINVVRWSP 320
AE+N + ++P
Sbjct: 277 -TAEVNCLSFNP 287
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 103/239 (43%), Gaps = 30/239 (12%)
Query: 86 LNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144
LN +++ S D ++ LW+I+ E + + N + ++ + W + +
Sbjct: 195 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 254
Query: 145 DTTCVIWDI---DREILETQLVAHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKER 199
D +IWD + + AH EV +S+ ++ F A+ S D +V ++DLR+ +
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTN 246
+E+ + + +++W+ + +A+ G D ++ V D+ P
Sbjct: 315 KLHSFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPE 371
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305
+ + H ++ SW P +CSV++D+ +W++ Y D EPE+
Sbjct: 372 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN--------DEEPEI 422
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 26/141 (18%)
Query: 157 ILETQLVAHDREV----YDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCP 212
I QL + D + YD G F F SV G + + I +E V
Sbjct: 87 IASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEI---------KINHEGEVN--- 134
Query: 213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV--------VVLSKHEGSVNGISWA 264
R + + +AT S+ +V + P+ P + L H+ G+SW
Sbjct: 135 --RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN 192
Query: 265 PLYGRRLCSVADDSRALIWEV 285
P L S +DD +W++
Sbjct: 193 PNLNGYLLSASDDHTICLWDI 213
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN-GGPSGDVEPELCYQ 308
+ + H V ++W L+ SVADD + +IW+ R+ N PS V+
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAH---- 278
Query: 309 SMAEINVVRWSP 320
AE+N + ++P
Sbjct: 279 -TAEVNCLSFNP 289
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90 IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
IV +SGD+ LW+I + ++ S A DTR + + D +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 208
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
+WD+ + H+ ++ I + N FA+ S D + R+FDLR D+E T ++N
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
+ C + + ++K+ +A G D V D + VL+ H+ V+
Sbjct: 269 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 316
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVF 192
D ++ T S DTTC +WDI+ T H +V +S +F S + D S +++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 193 DLRD 196
D+R+
Sbjct: 212 DVRE 215
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90 IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
IV +SGD+ LW+I + ++ S A DTR + + D +
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 219
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
+WD+ + H+ ++ I + N FA+ S D + R+FDLR D+E T ++N
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 279
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
+ C + + ++K+ +A G D V D + VL+ H+ V+
Sbjct: 280 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 327
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVF 192
D ++ T S DTTC +WDI+ T H +V +S +F S + D S +++
Sbjct: 163 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Query: 193 DLRD 196
D+R+
Sbjct: 223 DVRE 226
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90 IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
IV +SGD+ LW+I + ++ S A DTR + + D +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 208
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
+WD+ + H+ ++ I + N FA+ S D + R+FDLR D+E T ++N
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
+ C + + ++K+ +A G D V D + VL+ H+ V+
Sbjct: 269 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 316
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVF 192
D ++ T S DTTC +WDI+ T H +V +S +F S + D S +++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 193 DLRD 196
D+R+
Sbjct: 212 DVRE 215
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90 IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
IV +SGD+ LW+I + ++ S A DTR + + D +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 208
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
+WD+ + H+ ++ I + N FA+ S D + R+FDLR D+E T ++N
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
+ C + + ++K+ +A G D V D + VL+ H+ V+
Sbjct: 269 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 316
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVF 192
D ++ T S DTTC +WDI+ T H +V +S +F S + D S +++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 193 DLRD 196
D+R+
Sbjct: 212 DVRE 215
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 90 IVATSGDS-LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148
IV +SGD+ LW+I + ++ S A DTR + + D +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--------DTRLFVSGACDASA 208
Query: 149 VIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLR-DKERSTIIYEN 206
+WD+ + H+ ++ I + N FA+ S D + R+FDLR D+E T ++N
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN 259
+ C + + ++K+ +A G D V D + VL+ H+ V+
Sbjct: 269 II--CGITSVSFSKSGRLLLA--GYDDFNCNVWDA-LKADRAGVLAGHDNRVS 316
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVF 192
D ++ T S DTTC +WDI+ T H +V +S +F S + D S +++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 193 DLRD 196
D+R+
Sbjct: 212 DVRE 215
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 130 DWAGFDTRRVATCSVDTTCVIWDIDR-EILET-QLVAHDREVYDISW-GGFNVFASVSGD 186
DW+ + VA +D + +W +IL+ Q+ + ++W N A +
Sbjct: 123 DWSSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 179
Query: 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246
V+++D++ ++R + + + + L WN ++ + G S + D+R +
Sbjct: 180 AEVQLWDVQQQKRLRNMTSHSAR---VGSLSWNS----YILSSGSRSGHIHHHDVRVAEH 232
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306
V LS H V G+ WAP GR L S +D+ +W G G V +
Sbjct: 233 HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 283
Query: 307 YQSMAEINVVRWSPLELDWIAIA 329
Q + V W P + + +A
Sbjct: 284 TQHQGAVKAVAWCPWQSNVLATG 306
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 130 DWAGFDTRRVATCSVDTTCVIWDIDR-EILET-QLVAHDREVYDISW-GGFNVFASVSGD 186
DW+ + VA +D + +W +IL+ Q+ + ++W N A +
Sbjct: 112 DWSSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168
Query: 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246
V+++D++ ++R + + + + L WN ++ + G S + D+R +
Sbjct: 169 AEVQLWDVQQQKRLRNMTSHSAR---VGSLSWNS----YILSSGSRSGHIHHHDVRVAEH 221
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306
V LS H V G+ WAP GR L S +D+ +W G G V +
Sbjct: 222 HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 272
Query: 307 YQSMAEINVVRWSPLELDWIAIA 329
Q + V W P + + +A
Sbjct: 273 TQHQGAVKAVAWCPWQSNVLATG 295
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 90 IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149
+ A+ ++ LW+I+ E K + + S+ + W + + D +
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 255
Query: 150 IWDIDREILE--TQLV-AHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKERSTIIY 204
IWD + LV AH EV +S+ ++ F A+ S D +V ++DLR+ + +
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTNPVVVL 251
E+ + + ++ W+ + +A+ G D ++ V D+ P + +
Sbjct: 316 ESHKDE--IFQVHWSPHNETILASSGTD-RRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286
H ++ SW P +CSV++D+ IW++
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 175 GGFNVFASVSG--DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232
G F F SV+G +C +++ + R+ + +NP +AT
Sbjct: 105 GEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNP----------------HIIATKTPS 148
Query: 233 SNKVVVLDIRFPT--------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284
S+ +V + P NP + L H+ G+SW L S +DD +W+
Sbjct: 149 SDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD 208
Query: 285 V-VGP 288
+ GP
Sbjct: 209 INAGP 213
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 25/225 (11%)
Query: 65 RLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSS 124
+ + H + +AF P +T+ A+ +++LW + +L L + +S +
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTI---ASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGV 145
Query: 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV 183
A + D + +A+ S D T +W+ + ++L+T L H V+ +++ AS
Sbjct: 146 AFSP------DGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIASA 198
Query: 184 SGDCSVRVFDLRDKERSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242
S D +V++++ + T+ + + V+ D + +A+ D K V L R
Sbjct: 199 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF------SPDGQTIASASDD--KTVKLWNR 250
Query: 243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287
+ L+ H SVNG+++ P G+ + S +DD +W G
Sbjct: 251 NG-QLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNG 293
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 25/225 (11%)
Query: 65 RLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSS 124
+ + H + +AF P +T+ A+ +++LW + +L L + +S
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTI---ASASDDKTVKLWNRNG---QLLQTLTGHSSSVNGV 268
Query: 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV 183
A D + +A+ S D T +W+ + ++L+T L H V+ +++ AS
Sbjct: 269 AFRP------DGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIASA 321
Query: 184 SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIR 242
S D +V++++ + T+ + W A P +K V L R
Sbjct: 322 SDDKTVKLWNRNGQHLQTLTGHSSS--------VWGVAFSPDGQTIASASDDKTVKLWNR 373
Query: 243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287
+ L+ H SV G++++P G+ + S +DD +W G
Sbjct: 374 NG-QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG 416
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFD 193
D + +A+ S D T +W+ + ++L+T L H V+ +++ AS S D +V++++
Sbjct: 27 DGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 194 LRDKERSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252
+ T+ + + V+ D + +A+ D K V L R + L+
Sbjct: 86 RNGQLLQTLTGHSSSVRGVAF------SPDGQTIASASDD--KTVKLWNRNG-QLLQTLT 136
Query: 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287
H SV G++++P G+ + S +DD +W G
Sbjct: 137 GHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG 170
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 65 RLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSS 124
+ + H + +AF P +T+ A+ +++LW + +L L + +S +
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTI---ASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGV 432
Query: 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV 183
A + D + +A+ S D T +W+ + ++L+T L H V +++ AS
Sbjct: 433 AFSP------DDQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPDGQTIASA 485
Query: 184 SGDCSVRVFDLRDKERSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242
S D +V++++ + T+ + + V+ D + +A+ D K V L R
Sbjct: 486 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF------SPDGQTIASASDD--KTVKLWNR 537
Query: 243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284
+ L+ H SV G++++P G+ + S + D +W
Sbjct: 538 NG-QLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 97/220 (44%), Gaps = 22/220 (10%)
Query: 86 LNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144
LN +++ S D ++ LW+I+ E + + N + ++ + W + +
Sbjct: 197 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 256
Query: 145 DTTCVIWDI---DREILETQLVAHDREVYDISWGGFNVF--ASVSGDCSVRVFDLRDKER 199
D +IWD + + AH EV +S+ ++ F A+ S D +V ++DLR+ +
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-------------FPTN 246
+E+ + + +++W+ + +A+ G D ++ V D+ P
Sbjct: 317 KLHSFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPE 373
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286
+ + H ++ SW P +CSV++D+ +W++
Sbjct: 374 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 26/141 (18%)
Query: 157 ILETQLVAHDREV----YDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCP 212
I QL + D + YD G F F SV G + + I +E V
Sbjct: 89 IASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEI---------KINHEGEVN--- 136
Query: 213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV--------VVLSKHEGSVNGISWA 264
R + + +AT S+ +V + P+ P + L H+ G+SW
Sbjct: 137 --RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN 194
Query: 265 PLYGRRLCSVADDSRALIWEV 285
P L S +DD +W++
Sbjct: 195 PNLNGYLLSASDDHTICLWDI 215
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN-GGPSGDVEPELCYQ 308
+ + H V ++W L+ SVADD + +IW+ R+ N PS V+
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAH---- 280
Query: 309 SMAEINVVRWSP 320
AE+N + ++P
Sbjct: 281 -TAEVNCLSFNP 291
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 130 DWAGFDTRRVATCSVDTTCVIWDIDR-EILET-QLVAHDREVYDISW-GGFNVFASVSGD 186
DW+ + VA +D + +W +IL+ Q+ + ++W N A +
Sbjct: 32 DWSSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88
Query: 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246
V+++D++ ++R + + + + L WN ++ + G S + D+R +
Sbjct: 89 AEVQLWDVQQQKRLRNMTSHSAR---VGSLSWNS----YILSSGSRSGHIHHHDVRVAEH 141
Query: 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306
V LS H V G+ WAP GR L S +D+ +W G G V +
Sbjct: 142 HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSA--------PGEGGWVPLQTF 192
Query: 307 YQSMAEINVVRWSPLELDWIAIA 329
Q + V W P + + +A
Sbjct: 193 TQHQGAVKAVAWCPWQSNVLATG 215
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 18/166 (10%)
Query: 164 AHDREVYDISWGGFNV-FASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222
AH+ ++D + A+ S D ++++F++ + E +I + P+ R++W A
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDW--AH 63
Query: 223 PRF---MATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL-YGRRLCSVADDS 278
P+F +A+ D ++ + + + V + H SVN + WAP YG L + D
Sbjct: 64 PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG 123
Query: 279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324
+ + E +G P + +N W+P ++
Sbjct: 124 KVSVVEF----------KENGTTSPIIIDAHAIGVNSASWAPATIE 159
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 135 DTRRVATCSVDTTCVIW----DIDREILETQLVAHDREVYDISWGGF----NVFASVSGD 186
++R+ T D IW D +LE+ L H V D++W + ASVS D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Query: 187 CSVRVFDLRDKE---RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV 238
+ ++ +++ + T++ E D L R W+ + +A G D NKV +
Sbjct: 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDV-LWRASWSLSG-NVLALSGGD-NKVTL 280
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 180 FASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF---MATVGMDSNKV 236
A+ S D ++++F++ + E +I + P+ R++W A P+F +A+ D +
Sbjct: 26 LATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDW--AHPKFGTILASCSYDGKVL 82
Query: 237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPL-YGRRLCSVADDSRALIWEVVGPGYRSGNG 295
+ + + + V + H SVN + WAP YG L + D + + E
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF---------- 132
Query: 296 GPSGDVEPELCYQSMAEINVVRWSPLELD 324
+G P + +N W+P ++
Sbjct: 133 KENGTTSPIIIDAHAIGVNSASWAPATIE 161
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 180 FASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF---MATVGMDSNKV 236
A+ S D ++++F++ + E +I + P+ R++W A P+F +A+ D +
Sbjct: 24 LATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDW--AHPKFGTILASCSYDGKVL 80
Query: 237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPL-YGRRLCSVADDSRALIWEVVGPGYRSGNG 295
+ + + + V + H SVN + WAP YG L + D + + E
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF---------- 130
Query: 296 GPSGDVEPELCYQSMAEINVVRWSPLELD 324
+G P + +N W+P ++
Sbjct: 131 KENGTTSPIIIDAHAIGVNSASWAPATIE 159
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 135 DTRRVATCSVDTTCVIW----DIDREILETQLVAHDREVYDISWGGF----NVFASVSGD 186
++R+ T D IW D +LE+ L H V D++W + ASVS D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 187 CSVRVFDLRDKE---RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV 238
+ ++ +++ + T++ E D L R W+ + +A G D NKV +
Sbjct: 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDV-LWRASWSLSG-NVLALSGGD-NKVTL 280
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 181 ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF---MATVGMDSNKVV 237
A+ S D ++++F++ + E +I + P+ R++W A P+F +A+ D +
Sbjct: 25 ATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDW--AHPKFGTILASCSYDGKVXI 81
Query: 238 VLDIRFPTNPVVVLSKHEGSVNGISWAPL-YGRRLCSVADDSRALIWEVVGPGYRSGNGG 296
+ + + V + H SVN + WAP YG L + D + + E
Sbjct: 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEF----------K 131
Query: 297 PSGDVEPELCYQSMAEINVVRWSPLELD 324
+G P + +N W+P ++
Sbjct: 132 ENGTTSPIIIDAHAIGVNSASWAPATIE 159
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 18/166 (10%)
Query: 164 AHDREVYDISWGGFNV-FASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222
AH+ ++D + A+ S D ++++F++ + E +I + P+ R++W A
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDW--AH 63
Query: 223 PRF---MATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL-YGRRLCSVADDS 278
P+F +A+ D ++ + + + V + H SVN + WAP YG L + D
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123
Query: 279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324
+ + E +G P + +N W+P ++
Sbjct: 124 KVSVVEF----------KENGTTSPIIIDAHAIGVNSASWAPATIE 159
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 138 RVATCSVDTTCVIWDIDR----EILETQL-VAHDREVYDISWGGFNVFASVSGDC--SVR 190
R+ T S D TCV+WD+ I ++ H +V +S N +SG C +VR
Sbjct: 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 191 VFDLRDKERSTIIYENPVQD 210
++DLR R+ Y D
Sbjct: 232 LWDLRITSRAVRTYHGHEGD 251
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFD 193
D + +AT + D IWDI+ + L H++++Y + + + S SGD +VR++D
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 194 LRDKERS-TIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232
LR + S T+ E+ V + + D +++A +D
Sbjct: 194 LRTGQCSLTLSIEDGVTTVAV-----SPGDGKYIAAGSLD 228
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 17/161 (10%)
Query: 129 FDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY--DISWGGFNVFASVS-G 185
DW+ + V +++ +W+ D + + L D Y + W F SV G
Sbjct: 99 LDWSNLN---VVAVALERNVYVWNADSGSV-SALAETDESTYVASVKWSHDGSFLSVGLG 154
Query: 186 DCSVRVFDLRDKER-STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244
+ V ++D+ + + T+ C L WN R + + G S + D+R
Sbjct: 155 NGLVDIYDVESQTKLRTMAGHQARVGC----LSWN----RHVLSSGSRSGAIHHHDVRIA 206
Query: 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285
+ + L H V G++W G +L S +D+ IW+
Sbjct: 207 NHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDA 246
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 23/208 (11%)
Query: 96 DSLRLWEIHDDRTELKSLLNSNKTSE--FSSAITSFDWAGFDTRRVATCSVDTTCVIWDI 153
D LRL R L LN ++ E I + D + R + + D V++D+
Sbjct: 14 DPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDL 73
Query: 154 DREILETQLVA-------------HDREVYDISW--GGFNVFASVSGDCSVRVFDLRDKE 198
+ ++ H V + W +F S S D +++V+D +
Sbjct: 74 ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133
Query: 199 RSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGS 257
+ + +E V + + + + VG KV + D++ + +L H
Sbjct: 134 TADVFNFEETVYSHHMSPV----STKHCLVAVGTRGPKVQLCDLK-SGSCSHILQGHRQE 188
Query: 258 VNGISWAPLYGRRLCSVADDSRALIWEV 285
+ +SW+P Y L + + DSR +W+V
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 138 RVATCSVDTTCVIWDIDR--EILETQLVAHDREVYDISWGG---FNVFASVSGDCSVRVF 192
R+ATCS D + I+D+ +IL L H+ V+ ++W N+ AS S D V ++
Sbjct: 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 193 DLRDK--ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV- 249
+ E+S +E+ D + + W D + G + +L V
Sbjct: 87 REENGTWEKS---HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143
Query: 250 -VLSKHEGSVNGISWAP 265
+ + H N +SWAP
Sbjct: 144 KINNAHTIGCNAVSWAP 160
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 226 MATVGMDSNKVVVLDIRFPTNPVVV-LSKHEGSVNGISWA-PLYGRRLCSVADDSRALIW 283
+AT D + V + D+R ++ L HEG V ++WA P+YG L S + D + +IW
Sbjct: 28 LATCSSDRS-VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFD 193
+D RRV + + D +WD + E L H VY + + G +V + S D S+RV+D
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSG-SLDTSIRVWD 305
Query: 194 L 194
+
Sbjct: 306 V 306
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 53/146 (36%), Gaps = 46/146 (31%)
Query: 164 AHDREVYDISWGGFN--VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221
H V DI+W N V AS S DC+V V+++ D
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGG----------------------- 115
Query: 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRAL 281
+VL +R PV+ L H V ++W P L S D+ L
Sbjct: 116 ---------------LVLPLR---EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVIL 157
Query: 282 IWEVVGPGYRSGNGGPSGDVEPELCY 307
+W+ VG G GP DV P+ Y
Sbjct: 158 VWD-VGTGAAVLTLGP--DVHPDTIY 180
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
Query: 135 DTRRVATCSVDTTCVIWD-IDREILETQLVAHDREVYDISWGGFN------VFASVSGDC 187
D R +ATCSVD IW+ + E++ T +D ++ F + A+ S DC
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHT----YDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 188 SVRVFDLRDKE-RSTII-YENPVQDC 211
++++DL KE R+T+ + N V C
Sbjct: 730 FLKLWDLNQKECRNTMFGHTNSVNHC 755
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 46/148 (31%)
Query: 162 LVAHDREVYDISWGGFN--VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219
+ H V DI+W N V AS S DC+V V+++ D
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG--------------------- 115
Query: 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR 279
+VL +R PV+ L H V ++W P L S D+
Sbjct: 116 -----------------LVLPLR---EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 280 ALIWEVVGPGYRSGNGGPSGDVEPELCY 307
L+W+ VG G GP DV P+ Y
Sbjct: 156 ILVWD-VGTGAAVLTLGP--DVHPDTIY 180
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 48/237 (20%)
Query: 58 SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNS 116
S+F+ + H T + FFPS E L +++S D L++W + D S
Sbjct: 126 SNFNLQREIDQAHVSEITKLKFFPSGEAL----ISSSQDMQLKIWSVKD---------GS 172
Query: 117 NKTSEFSSAITSFDWAGFD-TRRVATCSVDTTCVIWDIDR-EILET-------------- 160
N + T D A D R V + S+D T +W+ + T
Sbjct: 173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 232
Query: 161 -QLVAHDREVYDIS-----------WGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPV 208
V DR++++IS +G + + VSG + V ++ KE++ +
Sbjct: 233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG--VITVHNVFSKEQTIQLPSKFT 290
Query: 209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGS-VNGISWA 264
C L ++ N A+ + G ++ + D+R P PV +EG+ +N + +A
Sbjct: 291 CSCNSLTVDGNNANYIY---AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA 344
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 48/237 (20%)
Query: 58 SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNS 116
S+F+ + H T + FFPS E L +++S D L++W + D S
Sbjct: 123 SNFNLQREIDQAHVSEITKLKFFPSGEAL----ISSSQDMQLKIWSVKD---------GS 169
Query: 117 NKTSEFSSAITSFDWAGFD-TRRVATCSVDTTCVIWDIDR-EILET-------------- 160
N + T D A D R V + S+D T +W+ + T
Sbjct: 170 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 229
Query: 161 -QLVAHDREVYDIS-----------WGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPV 208
V DR++++IS +G + + VSG + V ++ KE++ +
Sbjct: 230 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG--VITVHNVFSKEQTIQLPSKFT 287
Query: 209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGS-VNGISWA 264
C L ++ N A+ + G ++ + D+R P PV +EG+ +N + +A
Sbjct: 288 CSCNSLTVDGNNANYIY---AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA 341
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFN-VFASVSGDCSVRVFD 193
D + + S D T +WD+ + V H ++V +++ N S S D ++++++
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 194 LRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV--VLDIRFPTNPVVVL 251
+ T+ E+ + +R N ++P + + G D V + + + TN +
Sbjct: 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNP-IIVSCGWDKLVKVWNLANCKLKTNHI--- 212
Query: 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV-VGPGYRSGNGGPSGDVEPELCY 307
H G +N ++ +P G S D +A++W++ G + +G GD+ LC+
Sbjct: 213 -GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCF 264
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFN-VFASVSGDCSVRVFD 193
D + + S D T +WD+ + V H ++V +++ N S S D ++++++
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 194 LRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV--VLDIRFPTNPVVVL 251
+ T+ E+ + +R N ++P + + G D V + + + TN +
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNP-IIVSCGWDKLVKVWNLANCKLKTNHI--- 189
Query: 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV-VGPGYRSGNGGPSGDVEPELCY 307
H G +N ++ +P G S D +A++W++ G + +G GD+ LC+
Sbjct: 190 -GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCF 241
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 49/164 (29%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLV----AHDREVYDISWGG---FNVFASVSGD 186
F R VATCS D ++ +D++ +L AHD + I W + AS S D
Sbjct: 21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80
Query: 187 CSVRVFDLRDKERSTIIYENPVQ-DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245
+V++++ E+P Q +C R WNK
Sbjct: 81 KTVKLWE-----------EDPDQEECSGRR--WNK------------------------- 102
Query: 246 NPVVVLSKHEGSVNGISWAPLY-GRRLCSVADDSRALIWEVVGP 288
+ L+ +GS+ + +AP + G +L + +D +++ + P
Sbjct: 103 --LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 49/164 (29%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLV----AHDREVYDISWGG---FNVFASVSGD 186
F R VATCS D ++ +D++ +L AHD + I W + AS S D
Sbjct: 19 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 78
Query: 187 CSVRVFDLRDKERSTIIYENPVQ-DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245
+V++++ E+P Q +C R WNK
Sbjct: 79 KTVKLWE-----------EDPDQEECSGRR--WNK------------------------- 100
Query: 246 NPVVVLSKHEGSVNGISWAPLY-GRRLCSVADDSRALIWEVVGP 288
+ L+ +GS+ + +AP + G +L + +D +++ + P
Sbjct: 101 --LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 142
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 49/164 (29%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLV----AHDREVYDISWGG---FNVFASVSGD 186
F R VATCS D ++ +D++ +L AHD + I W + AS S D
Sbjct: 21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80
Query: 187 CSVRVFDLRDKERSTIIYENPVQ-DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245
+V++++ E+P Q +C R WNK
Sbjct: 81 KTVKLWE-----------EDPDQEECSGRR--WNK------------------------- 102
Query: 246 NPVVVLSKHEGSVNGISWAPLY-GRRLCSVADDSRALIWEVVGP 288
+ L+ +GS+ + +AP + G +L + +D +++ + P
Sbjct: 103 --LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 51/236 (21%)
Query: 90 IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149
+VA+ ++ LWEI + + L + + + ++ F D + + D +
Sbjct: 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS----DGTQAVSGGKDFSVK 164
Query: 150 IWDIDREILETQLVAHDREVYDISW--GGFNVFASVSGDCSVRVFDLRDKERSTII---- 203
+WD+ ++ + AH EV ++ G +F S D + ++D R + +T I
Sbjct: 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA 224
Query: 204 -------------------------------YENP-------VQDCPLLRLEWNKADPRF 225
+NP V + L ++ F
Sbjct: 225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPF 284
Query: 226 MATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRAL 281
+A++ D V VLD F + V H V G++W+PL + +V D + L
Sbjct: 285 LASISEDCT-VAVLDADF--SEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 139 VATCSVDTTCVIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLRDK 197
+ + S D T +WD + E L H V DIS+ + AS S D +++++D +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 198 E 198
E
Sbjct: 183 E 183
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 65 RLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSS 124
R + H + ++++ P+ + + + A+ ++++WE+ +T
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHI---VSASRDKTIKMWEV--------------QTGYCVK 228
Query: 125 AITSF-DWAGF-----DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFN 178
T +W D +A+CS D T +W + + + +L H V ISW +
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 179 VFASVS 184
++S+S
Sbjct: 289 SYSSIS 294
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 143 SVDTTCVIWDIDREILETQLVAHDREVYDISW-GGFNVFASVSGDCSVRVFDLRDK 197
S D T +WD+ + LV HD V + + G S + D ++RV+D ++K
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291
L +H G V GI WAP R+ + D A +W + G ++
Sbjct: 48 LKEHNGQVTGIDWAP-DSNRIVTCGTDRNAYVWTLKGRTWK 87
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 102 EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161
E+H + ++ E + +T DWA D+ R+ TC D +W + +
Sbjct: 31 EVHIYEKSGNKWVQVHELKEHNGQVTGIDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPT 89
Query: 162 LV 163
LV
Sbjct: 90 LV 91
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291
L +H G V G+ WAP R+ + D A +W + G ++
Sbjct: 48 LKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWK 87
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 102 EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161
E+H + ++ E + +T DWA D+ R+ TC D +W + +
Sbjct: 31 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPT 89
Query: 162 LV 163
LV
Sbjct: 90 LV 91
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVF 180
+S IT F+ V T + D ++D + QL HD V+ + + +
Sbjct: 120 HMTSVITCLQ---FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 181 ASVSGDCSVRVFDLR 195
S S D +VRV+D++
Sbjct: 177 VSGSTDRTVRVWDIK 191
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDL 194
+ +R + S+DTT IWD++ L L H V + S + D S+R +D
Sbjct: 321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDA 379
Query: 195 RDKER 199
D R
Sbjct: 380 NDYSR 384
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 44/172 (25%)
Query: 115 NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174
N N T + + A+ S D+ R+ + S D T I++ ++ H + V+ + +
Sbjct: 140 NGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 198
Query: 175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233
++FAS GD ++ +++ D ++ + ++ +++
Sbjct: 199 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV---------------------- 236
Query: 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285
H GSV G++W+P G ++ S + D IW V
Sbjct: 237 -------------------AHSGSVFGLTWSP-DGTKIASASADKTIKIWNV 268
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFD 193
F+ V T + D ++D + QL HD V+ + + + S S D +VRV+D
Sbjct: 130 FEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189
Query: 194 LR 195
++
Sbjct: 190 IK 191
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 22/132 (16%)
Query: 70 HPYTPTNIAFFPSEETLNPDIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAI 126
HP T +A AT D S+ +W++ + T L++L ++ I
Sbjct: 223 HPKNSTRVA------------TATGSDNDPSILIWDLRNANTPLQTLNQGHQ-----KGI 265
Query: 127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVS 184
S DW D + + D T ++W+ + +Q A + + ++FA S
Sbjct: 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
Query: 185 GDCSVRVFDLRD 196
D + V L++
Sbjct: 326 FDNKIEVQTLQN 337
>pdb|4FQJ|A Chain A, Influenza BFLORIDA42006 HEMAGGLUTININ FAB CR8071 COMPLEX
Length = 304
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 20/127 (15%)
Query: 19 PISTVAWSVRHDRKSRLAVGSFLEDYSN-KIELVNFNPETSDFSADNRLIFDH--PYTPT 75
P+++ + + HDR + + L Y N ++ N RL P +
Sbjct: 59 PVTSGCFPIMHDRTKIRQLPNLLRGYENIRLSTQNVIDAEKAPGGPYRLGTSGSCPNATS 118
Query: 76 NIAFF-------PSEETLN---------PDIVATSGDSLRLWEIH-DDRTELKSLLNSNK 118
FF P + N P I D + +W H DD+T++K+L +
Sbjct: 119 KSGFFATMAWAVPKDNNKNATNPLTVEVPYICTEGEDQITVWGFHSDDKTQMKNLYGDSN 178
Query: 119 TSEFSSA 125
+F+S+
Sbjct: 179 PQKFTSS 185
>pdb|3QVW|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K278a
Length = 392
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 41 LEDYSNKIELVNFNPETSDFSADN---RLIFDHPYTPTNIAFFPS 82
L DY K+ N E+ SAD +++ PY+ T I +FPS
Sbjct: 257 LGDYDGKVLSARDNKESKVLSADKVLEKMLGYSPYSITEIQYFPS 301
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFD 193
+D R + T S D+T +WD++ + L+ H V + + + + S D S+ V+D
Sbjct: 181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWD 239
Query: 194 L 194
+
Sbjct: 240 M 240
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 40 FLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE-----ETLNPDIVATS 94
++ED +K + N T D +++ Y N FF SE E N + + +
Sbjct: 232 YIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLA 291
Query: 95 GDSLRLWEIHDDRT---ELKSLLNSNKTSE 121
+L + E++DD T +K L+ SN ++
Sbjct: 292 NGALGIIELNDDYTLKKVMKPLITSNTVTD 321
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 40 FLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE-----ETLNPDIVATS 94
++ED +K + N T D +++ Y N FF SE E N + + +
Sbjct: 232 YIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLA 291
Query: 95 GDSLRLWEIHDDRT---ELKSLLNSNKTSE 121
+L + E++DD T +K L+ SN ++
Sbjct: 292 NGALGIIELNDDYTLKKVMKPLITSNTVTD 321
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 40 FLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE-----ETLNPDIVATS 94
++ED +K + N T D +++ Y N FF SE E N + + +
Sbjct: 232 YIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLA 291
Query: 95 GDSLRLWEIHDDRT---ELKSLLNSNKTSE 121
+L + E++DD T +K L+ SN ++
Sbjct: 292 NGALGIIELNDDYTLKKVMKPLITSNTVTD 321
>pdb|3OM4|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
Length = 456
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 40 FLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE-----ETLNPDIVATS 94
++ED +K + N T D +++ Y N FF SE E N + + +
Sbjct: 232 YIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLA 291
Query: 95 GDSLRLWEIHDDRT---ELKSLLNSNKTSE 121
+L + E++DD T +K L+ SN ++
Sbjct: 292 NGALGIIELNDDYTLKKVMKPLITSNTVTD 321
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 40 FLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE-----ETLNPDIVATS 94
++ED +K + N T D +++ Y N FF SE E N + + +
Sbjct: 232 YIEDNGHKYLVFEANTGTEDGYQGEDSLYNRAYYGGNNPFFQSEKKKLLEGSNKEKASLA 291
Query: 95 GDSLRLWEIHDDRT---ELKSLLNSNKTSE 121
+L + E++DD T +K L+ SN ++
Sbjct: 292 NGALGIIELNDDYTLKKVMKPLITSNTVTD 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,873,502
Number of Sequences: 62578
Number of extensions: 454148
Number of successful extensions: 1118
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 176
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)