Query 040307
Match_columns 339
No_of_seqs 577 out of 1826
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 07:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.2E-52 2.6E-57 328.4 25.9 285 15-338 113-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-49 5.4E-54 313.3 21.8 282 16-338 174-458 (459)
3 KOG0290 Conserved WD40 repeat- 100.0 6.4E-45 1.4E-49 275.6 27.8 325 6-339 33-364 (364)
4 KOG0315 G-protein beta subunit 100.0 9.9E-44 2.2E-48 263.5 27.7 270 32-339 10-287 (311)
5 KOG0271 Notchless-like WD40 re 100.0 4.9E-44 1.1E-48 280.2 23.1 240 68-339 112-438 (480)
6 KOG0286 G-protein beta subunit 100.0 9E-42 2E-46 258.6 30.6 281 15-338 53-343 (343)
7 KOG0284 Polyadenylation factor 100.0 9.7E-44 2.1E-48 280.5 17.6 279 16-338 95-378 (464)
8 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-43 9.4E-48 278.0 19.8 247 9-284 208-458 (459)
9 KOG0279 G protein beta subunit 100.0 1.8E-40 3.9E-45 250.0 32.1 293 15-339 13-312 (315)
10 KOG0645 WD40 repeat protein [G 100.0 5.3E-40 1.1E-44 246.5 31.4 290 15-339 12-310 (312)
11 KOG0273 Beta-transducin family 100.0 7.5E-41 1.6E-45 268.8 26.8 287 13-339 174-481 (524)
12 KOG0277 Peroxisomal targeting 100.0 5.9E-41 1.3E-45 249.5 22.0 291 18-338 9-307 (311)
13 KOG0273 Beta-transducin family 100.0 1.2E-39 2.6E-44 261.8 29.8 277 17-339 235-522 (524)
14 KOG0295 WD40 repeat-containing 100.0 2.9E-40 6.2E-45 257.4 24.2 282 15-338 106-404 (406)
15 KOG0279 G protein beta subunit 100.0 4.6E-39 1E-43 242.4 27.3 243 68-339 12-261 (315)
16 KOG0264 Nucleosome remodeling 100.0 3.7E-39 8E-44 258.2 28.3 319 10-339 33-403 (422)
17 KOG0263 Transcription initiati 100.0 6.7E-40 1.5E-44 278.7 24.2 276 9-339 369-648 (707)
18 KOG0286 G-protein beta subunit 100.0 7.3E-39 1.6E-43 242.9 26.7 242 18-284 98-343 (343)
19 KOG0265 U5 snRNP-specific prot 100.0 8.7E-39 1.9E-43 243.3 26.4 285 10-336 40-334 (338)
20 KOG0291 WD40-repeat-containing 100.0 4.6E-38 9.9E-43 266.1 32.1 280 18-339 266-549 (893)
21 PLN00181 protein SPA1-RELATED; 100.0 1.8E-37 4E-42 288.1 39.6 297 16-339 482-792 (793)
22 KOG0266 WD40 repeat-containing 100.0 7E-38 1.5E-42 271.7 32.0 283 17-338 159-452 (456)
23 KOG0313 Microtubule binding pr 100.0 5E-38 1.1E-42 246.2 25.4 291 6-338 94-416 (423)
24 cd00200 WD40 WD40 domain, foun 100.0 1.3E-36 2.7E-41 251.0 35.5 280 15-338 7-289 (289)
25 KOG0285 Pleiotropic regulator 100.0 1.1E-37 2.5E-42 242.6 23.8 286 15-338 149-437 (460)
26 KOG0284 Polyadenylation factor 100.0 9.3E-39 2E-43 252.5 14.4 246 13-289 134-383 (464)
27 KOG0296 Angio-associated migra 100.0 5.5E-36 1.2E-40 233.7 28.4 287 11-339 57-397 (399)
28 KOG0318 WD40 repeat stress pro 100.0 1.5E-35 3.3E-40 241.5 31.8 293 16-339 189-559 (603)
29 KOG0265 U5 snRNP-specific prot 100.0 1.5E-36 3.3E-41 231.1 24.1 243 67-339 43-295 (338)
30 KOG0282 mRNA splicing factor [ 100.0 1.4E-37 3.1E-42 250.7 19.4 292 7-338 203-503 (503)
31 KOG0277 Peroxisomal targeting 100.0 2.7E-37 5.9E-42 230.0 19.3 253 9-285 52-308 (311)
32 KOG0293 WD40 repeat-containing 100.0 1.1E-36 2.5E-41 241.2 23.7 282 15-338 222-511 (519)
33 KOG0315 G-protein beta subunit 100.0 1.4E-35 3E-40 220.3 27.5 272 7-318 29-308 (311)
34 KOG0292 Vesicle coat complex C 100.0 1.7E-36 3.7E-41 260.9 25.9 281 17-339 9-320 (1202)
35 KOG0291 WD40-repeat-containing 100.0 3.1E-35 6.6E-40 249.1 32.6 298 11-339 300-611 (893)
36 KOG0318 WD40 repeat stress pro 100.0 6.6E-35 1.4E-39 237.7 31.5 286 15-338 57-390 (603)
37 KOG0281 Beta-TrCP (transducin 100.0 2.3E-37 5E-42 240.3 16.0 276 16-339 196-476 (499)
38 KOG0645 WD40 repeat protein [G 100.0 7.6E-35 1.6E-39 218.9 28.8 239 68-338 11-259 (312)
39 KOG0310 Conserved WD40 repeat- 100.0 1.2E-35 2.6E-40 240.0 24.3 277 16-336 25-305 (487)
40 KOG0316 Conserved WD40 repeat- 100.0 8.3E-35 1.8E-39 214.6 25.4 275 10-332 9-292 (307)
41 KOG0319 WD40-repeat-containing 100.0 1.3E-35 2.8E-40 250.7 23.9 285 16-339 104-576 (775)
42 KOG0278 Serine/threonine kinas 100.0 3.5E-36 7.7E-41 223.7 17.2 287 8-339 5-296 (334)
43 KOG0772 Uncharacterized conser 100.0 3.7E-35 8.1E-40 238.7 24.0 294 16-337 166-484 (641)
44 KOG0276 Vesicle coat complex C 100.0 1.1E-34 2.4E-39 241.1 26.4 274 16-333 12-291 (794)
45 KOG0263 Transcription initiati 100.0 2.6E-35 5.7E-40 250.9 23.0 207 7-243 441-650 (707)
46 KOG0319 WD40-repeat-containing 100.0 1.5E-34 3.2E-39 244.4 25.1 279 17-338 323-617 (775)
47 KOG0641 WD40 repeat protein [G 100.0 2.6E-32 5.6E-37 200.6 31.6 299 11-339 26-348 (350)
48 KOG0285 Pleiotropic regulator 100.0 2.1E-34 4.6E-39 224.5 21.6 237 68-338 148-387 (460)
49 KOG0264 Nucleosome remodeling 100.0 3.8E-34 8.2E-39 229.5 23.7 261 8-287 115-405 (422)
50 KOG0268 Sof1-like rRNA process 100.0 3.8E-35 8.3E-40 228.9 16.7 276 14-338 63-343 (433)
51 KOG0973 Histone transcription 100.0 1.6E-33 3.4E-38 248.0 28.6 291 17-338 13-353 (942)
52 KOG0275 Conserved WD40 repeat- 100.0 8.1E-35 1.8E-39 224.5 17.8 288 13-338 209-507 (508)
53 KOG0640 mRNA cleavage stimulat 100.0 2E-33 4.3E-38 215.4 22.8 296 8-338 103-424 (430)
54 KOG1407 WD40 repeat protein [F 100.0 2E-32 4.4E-37 204.9 27.2 272 15-330 18-292 (313)
55 KOG0305 Anaphase promoting com 100.0 4.3E-33 9.4E-38 233.1 25.7 270 23-339 183-460 (484)
56 KOG0288 WD40 repeat protein Ti 100.0 1.3E-34 2.9E-39 229.4 15.7 281 15-338 173-459 (459)
57 KOG0276 Vesicle coat complex C 100.0 1.9E-33 4.1E-38 233.7 23.3 241 68-338 10-255 (794)
58 PLN00181 protein SPA1-RELATED; 100.0 2E-32 4.2E-37 254.6 32.6 246 68-338 480-736 (793)
59 KOG0313 Microtubule binding pr 100.0 9.5E-33 2.1E-37 216.7 25.4 260 7-287 133-419 (423)
60 KOG0295 WD40 repeat-containing 100.0 9.6E-34 2.1E-38 221.1 19.2 241 68-339 105-363 (406)
61 KOG0266 WD40 repeat-containing 100.0 2.3E-32 5E-37 237.3 29.6 242 69-339 157-408 (456)
62 KOG0643 Translation initiation 100.0 6.2E-33 1.4E-37 208.3 21.9 292 10-338 3-315 (327)
63 KOG0281 Beta-TrCP (transducin 100.0 1.6E-34 3.5E-39 224.6 11.7 229 70-339 196-427 (499)
64 PTZ00421 coronin; Provisional 100.0 5.4E-31 1.2E-35 228.0 34.0 226 68-322 72-315 (493)
65 KOG0316 Conserved WD40 repeat- 100.0 2.6E-32 5.6E-37 201.4 21.7 236 68-339 14-256 (307)
66 KOG0292 Vesicle coat complex C 100.0 6E-33 1.3E-37 239.2 20.6 241 70-339 8-279 (1202)
67 KOG0283 WD40 repeat-containing 100.0 2.3E-32 4.9E-37 234.8 23.3 289 15-339 265-575 (712)
68 cd00200 WD40 WD40 domain, foun 100.0 9.6E-31 2.1E-35 215.9 31.7 239 68-339 6-248 (289)
69 KOG0639 Transducin-like enhanc 100.0 1.3E-32 2.9E-37 223.4 19.4 290 9-339 411-703 (705)
70 KOG0306 WD40-repeat-containing 100.0 1.2E-31 2.7E-36 227.3 25.9 278 13-338 369-662 (888)
71 KOG1446 Histone H3 (Lys4) meth 100.0 4.8E-30 1E-34 197.4 32.3 278 16-337 13-300 (311)
72 KOG0647 mRNA export protein (c 100.0 6.1E-31 1.3E-35 200.8 26.8 276 16-331 26-315 (347)
73 KOG0299 U3 snoRNP-associated p 100.0 5.7E-31 1.2E-35 211.5 26.2 286 11-334 136-450 (479)
74 KOG0305 Anaphase promoting com 100.0 1.9E-31 4E-36 223.3 24.4 247 11-289 212-464 (484)
75 KOG0306 WD40-repeat-containing 100.0 6.1E-31 1.3E-35 223.1 27.3 288 12-338 315-620 (888)
76 KOG0269 WD40 repeat-containing 100.0 4.4E-32 9.6E-37 230.6 19.7 287 16-335 38-335 (839)
77 KOG0300 WD40 repeat-containing 100.0 7.5E-31 1.6E-35 202.1 22.6 286 16-339 147-475 (481)
78 KOG0270 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 209.0 24.2 295 22-339 130-448 (463)
79 KOG1332 Vesicle coat complex C 100.0 3.1E-31 6.8E-36 196.7 19.5 253 66-338 6-284 (299)
80 KOG1036 Mitotic spindle checkp 100.0 7.8E-30 1.7E-34 195.4 26.6 268 16-329 12-293 (323)
81 KOG0274 Cdc4 and related F-box 100.0 3.7E-30 8.1E-35 223.2 27.6 271 16-339 207-481 (537)
82 KOG0269 WD40 repeat-containing 100.0 1.7E-31 3.7E-36 227.1 17.7 248 70-339 38-295 (839)
83 KOG0310 Conserved WD40 repeat- 100.0 1.1E-30 2.4E-35 211.4 20.7 239 70-339 25-267 (487)
84 KOG2055 WD40 repeat protein [G 100.0 8E-30 1.7E-34 205.1 24.7 285 17-339 213-511 (514)
85 PTZ00420 coronin; Provisional 100.0 1.2E-28 2.5E-33 214.6 33.7 248 44-323 52-319 (568)
86 PTZ00421 coronin; Provisional 100.0 5.4E-29 1.2E-33 215.7 31.4 240 72-339 21-289 (493)
87 KOG0302 Ribosome Assembly prot 100.0 5.3E-30 1.1E-34 201.3 22.3 258 68-337 148-435 (440)
88 KOG0282 mRNA splicing factor [ 100.0 6.1E-31 1.3E-35 212.6 16.5 241 68-338 211-460 (503)
89 KOG0293 WD40 repeat-containing 100.0 2.2E-30 4.8E-35 205.7 19.2 245 16-288 268-515 (519)
90 KOG0296 Angio-associated migra 100.0 2.5E-29 5.4E-34 196.7 24.6 238 68-339 61-355 (399)
91 KOG0289 mRNA splicing factor [ 100.0 3.8E-29 8.1E-34 199.8 25.8 279 18-339 220-505 (506)
92 KOG0278 Serine/threonine kinas 100.0 1E-30 2.2E-35 194.8 15.6 250 6-289 47-300 (334)
93 PTZ00420 coronin; Provisional 100.0 1.8E-28 3.9E-33 213.4 31.1 216 97-339 55-292 (568)
94 KOG0640 mRNA cleavage stimulat 100.0 1E-29 2.2E-34 195.1 19.3 255 9-286 163-426 (430)
95 KOG0294 WD40 repeat-containing 100.0 1.8E-28 4E-33 188.4 26.2 264 34-339 3-280 (362)
96 KOG0643 Translation initiation 100.0 9.6E-29 2.1E-33 185.8 23.7 233 67-329 6-250 (327)
97 KOG1446 Histone H3 (Lys4) meth 100.0 8.6E-28 1.9E-32 185.0 28.3 238 69-339 12-261 (311)
98 KOG0307 Vesicle coat complex C 100.0 2.3E-30 4.9E-35 229.3 15.1 297 20-339 9-326 (1049)
99 KOG0321 WD40 repeat-containing 100.0 1E-28 2.2E-33 206.1 23.7 293 19-339 51-390 (720)
100 KOG0308 Conserved WD40 repeat- 100.0 2E-29 4.3E-34 210.8 19.0 281 22-338 29-325 (735)
101 KOG1007 WD repeat protein TSSC 100.0 3.8E-28 8.2E-33 184.7 23.5 291 32-338 26-359 (370)
102 KOG0641 WD40 repeat protein [G 100.0 5.8E-27 1.3E-31 172.5 28.9 248 16-286 88-349 (350)
103 KOG0289 mRNA splicing factor [ 100.0 2.1E-28 4.6E-33 195.6 22.7 238 72-338 220-460 (506)
104 KOG0288 WD40 repeat protein Ti 100.0 3.7E-30 8.1E-35 204.2 12.7 240 68-339 172-416 (459)
105 KOG1407 WD40 repeat protein [F 100.0 2.6E-28 5.6E-33 182.9 21.7 237 68-336 17-257 (313)
106 KOG1332 Vesicle coat complex C 100.0 8.4E-29 1.8E-33 183.9 17.7 253 13-289 7-289 (299)
107 KOG0647 mRNA export protein (c 100.0 2.1E-27 4.6E-32 181.6 24.2 240 68-338 24-279 (347)
108 KOG0294 WD40 repeat-containing 100.0 6.2E-27 1.3E-31 180.1 25.4 243 11-289 36-284 (362)
109 KOG1539 WD repeat protein [Gen 100.0 8.4E-27 1.8E-31 200.3 29.0 295 7-338 233-646 (910)
110 KOG0300 WD40 repeat-containing 100.0 6E-28 1.3E-32 186.1 19.6 239 68-339 145-427 (481)
111 KOG2096 WD40 repeat protein [G 100.0 1.2E-26 2.6E-31 178.9 25.7 291 16-338 85-400 (420)
112 KOG0646 WD40 repeat protein [G 100.0 2.8E-27 6E-32 190.8 22.8 252 32-324 50-333 (476)
113 KOG2445 Nuclear pore complex c 100.0 1.5E-26 3.1E-31 177.5 25.3 256 15-289 11-321 (361)
114 KOG2445 Nuclear pore complex c 100.0 2.1E-26 4.6E-31 176.6 26.0 260 67-338 9-316 (361)
115 KOG1408 WD40 repeat protein [F 100.0 7.3E-27 1.6E-31 197.8 24.5 300 6-339 358-712 (1080)
116 KOG0301 Phospholipase A2-activ 100.0 8E-27 1.7E-31 196.6 24.5 271 15-338 12-286 (745)
117 KOG0268 Sof1-like rRNA process 100.0 3.2E-28 6.9E-33 190.4 14.9 235 68-339 63-301 (433)
118 KOG0270 WD40 repeat-containing 100.0 3.5E-27 7.7E-32 189.1 21.0 255 17-289 173-452 (463)
119 KOG0772 Uncharacterized conser 100.0 1.6E-27 3.4E-32 194.5 19.3 249 17-284 214-485 (641)
120 KOG0274 Cdc4 and related F-box 100.0 1E-26 2.2E-31 201.9 24.8 236 15-289 247-485 (537)
121 KOG1034 Transcriptional repres 100.0 2.6E-27 5.6E-32 183.1 18.7 297 16-338 37-381 (385)
122 KOG0650 WD40 repeat nucleolar 100.0 1E-26 2.2E-31 193.0 23.3 301 9-337 392-732 (733)
123 KOG0275 Conserved WD40 repeat- 100.0 5E-28 1.1E-32 187.1 14.0 240 16-284 262-507 (508)
124 KOG0283 WD40 repeat-containing 100.0 3.5E-27 7.6E-32 203.1 20.3 198 122-339 266-531 (712)
125 KOG4328 WD40 protein [Function 100.0 2.1E-26 4.6E-31 185.3 23.1 291 16-338 185-493 (498)
126 KOG1274 WD40 repeat protein [G 100.0 1.2E-25 2.5E-30 195.3 28.5 268 12-325 8-285 (933)
127 KOG0302 Ribosome Assembly prot 100.0 1.5E-26 3.3E-31 181.9 20.7 249 14-279 148-432 (440)
128 KOG4283 Transcription-coupled 100.0 1.1E-25 2.3E-30 172.0 24.0 290 15-338 41-363 (397)
129 KOG1445 Tumor-specific antigen 100.0 7.5E-27 1.6E-31 195.4 19.1 115 211-338 628-748 (1012)
130 KOG0973 Histone transcription 100.0 3.9E-26 8.5E-31 201.7 24.7 254 9-289 60-358 (942)
131 KOG0308 Conserved WD40 repeat- 100.0 4.8E-27 1E-31 196.6 17.9 240 70-336 20-281 (735)
132 KOG2106 Uncharacterized conser 100.0 7.7E-25 1.7E-29 178.5 28.9 285 16-339 153-476 (626)
133 KOG1539 WD repeat protein [Gen 100.0 1.1E-25 2.3E-30 193.6 25.1 305 6-339 190-605 (910)
134 KOG0299 U3 snoRNP-associated p 99.9 6.2E-26 1.3E-30 182.8 21.3 244 68-339 139-409 (479)
135 KOG2048 WD40 repeat protein [G 99.9 1.1E-24 2.4E-29 183.4 29.4 282 16-336 24-315 (691)
136 KOG1007 WD repeat protein TSSC 99.9 1.1E-25 2.4E-30 171.3 20.4 261 16-288 62-363 (370)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.7E-24 1.2E-28 177.3 32.8 262 33-339 2-278 (300)
138 KOG1063 RNA polymerase II elon 99.9 2.6E-25 5.6E-30 187.6 23.9 296 15-339 265-647 (764)
139 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-25 2.5E-30 183.0 20.6 269 14-322 31-305 (673)
140 KOG0301 Phospholipase A2-activ 99.9 1.3E-25 2.8E-30 189.5 21.5 235 68-339 11-248 (745)
141 KOG0267 Microtubule severing p 99.9 1.7E-27 3.6E-32 201.6 9.3 229 68-329 25-257 (825)
142 KOG0646 WD40 repeat protein [G 99.9 3.9E-25 8.4E-30 178.5 22.4 274 44-339 16-306 (476)
143 KOG4328 WD40 protein [Function 99.9 2.5E-25 5.4E-30 179.2 20.8 250 68-338 183-448 (498)
144 KOG4378 Nuclear protein COP1 [ 99.9 2.1E-25 4.6E-30 181.5 20.1 263 45-339 11-279 (673)
145 KOG1036 Mitotic spindle checkp 99.9 1.6E-24 3.5E-29 166.4 23.7 240 68-339 10-261 (323)
146 KOG1009 Chromatin assembly com 99.9 1.6E-24 3.5E-29 172.1 23.9 287 16-336 12-368 (434)
147 KOG2106 Uncharacterized conser 99.9 2.4E-23 5.3E-28 169.9 31.0 279 16-338 199-519 (626)
148 KOG1063 RNA polymerase II elon 99.9 1.1E-24 2.3E-29 184.0 23.5 301 15-339 189-601 (764)
149 KOG4283 Transcription-coupled 99.9 4.4E-25 9.6E-30 168.6 17.7 209 124-339 44-275 (397)
150 KOG1273 WD40 repeat protein [G 99.9 4E-24 8.8E-29 164.8 22.9 286 9-339 16-321 (405)
151 KOG0307 Vesicle coat complex C 99.9 7.3E-26 1.6E-30 201.0 14.7 260 9-289 56-330 (1049)
152 KOG1408 WD40 repeat protein [F 99.9 9.1E-25 2E-29 185.2 19.3 251 13-288 455-715 (1080)
153 KOG2919 Guanine nucleotide-bin 99.9 9E-24 1.9E-28 163.4 23.1 285 20-332 52-361 (406)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.7E-22 8.1E-27 166.3 33.3 268 7-320 20-300 (300)
155 KOG1274 WD40 repeat protein [G 99.9 2.6E-23 5.6E-28 180.9 25.4 239 68-339 10-261 (933)
156 KOG0290 Conserved WD40 repeat- 99.9 2.2E-23 4.7E-28 159.0 19.2 246 13-277 92-357 (364)
157 KOG2096 WD40 repeat protein [G 99.9 7.9E-23 1.7E-27 158.0 22.3 254 68-338 83-358 (420)
158 KOG1034 Transcriptional repres 99.9 9.9E-24 2.2E-28 163.4 17.4 249 16-286 88-383 (385)
159 KOG0303 Actin-binding protein 99.9 8.4E-23 1.8E-27 162.0 22.8 209 68-289 78-297 (472)
160 KOG0321 WD40 repeat-containing 99.9 3.5E-23 7.6E-28 173.4 20.3 257 15-289 98-394 (720)
161 KOG0639 Transducin-like enhanc 99.9 1.1E-23 2.4E-28 171.9 16.6 239 16-286 464-704 (705)
162 KOG0267 Microtubule severing p 99.9 5.9E-25 1.3E-29 186.3 9.4 230 16-277 27-259 (825)
163 KOG2919 Guanine nucleotide-bin 99.9 7.3E-23 1.6E-27 158.4 19.7 255 8-277 95-361 (406)
164 KOG1273 WD40 repeat protein [G 99.9 2.1E-22 4.6E-27 155.4 21.1 247 69-338 22-278 (405)
165 KOG2048 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 164.5 26.3 239 70-338 24-273 (691)
166 KOG1538 Uncharacterized conser 99.9 3.1E-22 6.7E-27 168.9 21.9 277 13-338 8-291 (1081)
167 KOG1587 Cytoplasmic dynein int 99.9 3.5E-21 7.6E-26 166.4 27.1 270 46-339 222-515 (555)
168 KOG0649 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 141.0 25.0 281 18-338 11-314 (325)
169 KOG4227 WD40 repeat protein [G 99.9 4.8E-22 1E-26 157.9 18.5 246 68-339 53-321 (609)
170 KOG0303 Actin-binding protein 99.9 2.9E-21 6.3E-26 153.3 21.0 242 73-339 29-293 (472)
171 KOG2055 WD40 repeat protein [G 99.9 3.2E-21 7E-26 155.9 21.6 243 70-339 212-466 (514)
172 KOG4227 WD40 repeat protein [G 99.9 2.2E-20 4.7E-25 148.6 22.6 302 15-338 54-385 (609)
173 KOG0650 WD40 repeat nucleolar 99.9 1.3E-20 2.7E-25 157.2 20.6 238 68-338 397-678 (733)
174 COG2319 FOG: WD40 repeat [Gene 99.9 3.4E-18 7.4E-23 149.2 36.3 286 13-339 61-358 (466)
175 KOG1188 WD40 repeat protein [G 99.9 4.6E-20 1E-24 144.0 21.3 281 32-339 40-345 (376)
176 KOG1188 WD40 repeat protein [G 99.9 8.5E-21 1.8E-25 148.0 17.0 192 137-339 41-241 (376)
177 KOG2110 Uncharacterized conser 99.9 2.8E-19 6E-24 141.1 25.3 234 72-339 6-247 (391)
178 KOG0642 Cell-cycle nuclear pro 99.9 5.5E-21 1.2E-25 158.2 16.1 244 68-339 291-560 (577)
179 KOG1523 Actin-related protein 99.9 1.8E-19 3.8E-24 139.6 23.0 238 16-277 9-269 (361)
180 KOG1517 Guanine nucleotide bin 99.9 1.9E-19 4.1E-24 159.3 25.9 295 19-338 1066-1379(1387)
181 KOG1587 Cytoplasmic dynein int 99.9 1.7E-19 3.6E-24 156.0 25.2 268 8-288 233-518 (555)
182 KOG1445 Tumor-specific antigen 99.9 1.8E-20 3.9E-25 157.5 18.5 244 32-289 591-847 (1012)
183 PRK11028 6-phosphogluconolacto 99.9 6.8E-18 1.5E-22 142.3 33.6 264 44-339 10-303 (330)
184 KOG0322 G-protein beta subunit 99.9 6E-20 1.3E-24 138.6 17.1 250 15-285 12-322 (323)
185 KOG0771 Prolactin regulatory e 99.9 3E-19 6.5E-24 143.2 21.4 195 127-339 148-353 (398)
186 KOG0642 Cell-cycle nuclear pro 99.9 1.6E-20 3.5E-25 155.5 14.1 251 15-289 292-564 (577)
187 KOG1523 Actin-related protein 99.8 2.9E-19 6.2E-24 138.5 19.7 234 70-331 9-269 (361)
188 KOG1963 WD40 repeat protein [G 99.8 5.4E-18 1.2E-22 147.6 28.8 292 20-338 163-536 (792)
189 KOG0644 Uncharacterized conser 99.8 1.9E-20 4.1E-25 161.8 11.0 238 68-337 187-465 (1113)
190 KOG0649 WD40 repeat protein [G 99.8 8.8E-18 1.9E-22 125.6 23.6 239 11-283 56-313 (325)
191 KOG2110 Uncharacterized conser 99.8 1.1E-16 2.4E-21 126.6 30.5 284 18-339 6-329 (391)
192 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-16 5.1E-21 137.6 36.2 280 14-339 152-441 (466)
193 PRK11028 6-phosphogluconolacto 99.8 8.2E-17 1.8E-21 135.7 31.4 256 9-288 26-306 (330)
194 KOG2111 Uncharacterized conser 99.8 2.6E-16 5.7E-21 122.2 30.9 280 19-335 7-317 (346)
195 KOG1538 Uncharacterized conser 99.8 5.2E-19 1.1E-23 149.7 17.0 242 9-289 44-296 (1081)
196 KOG4497 Uncharacterized conser 99.8 1.4E-17 3E-22 129.8 21.2 269 22-338 13-389 (447)
197 KOG2111 Uncharacterized conser 99.8 4.9E-17 1.1E-21 126.2 23.7 235 74-339 8-255 (346)
198 KOG1310 WD40 repeat protein [G 99.8 7.5E-19 1.6E-23 145.5 14.3 208 68-289 47-306 (758)
199 KOG0322 G-protein beta subunit 99.8 5.2E-18 1.1E-22 128.2 17.4 241 68-339 11-322 (323)
200 KOG1009 Chromatin assembly com 99.8 1.1E-17 2.4E-22 133.6 20.2 247 16-289 64-375 (434)
201 KOG1354 Serine/threonine prote 99.8 3.1E-17 6.8E-22 128.6 21.9 307 16-338 24-432 (433)
202 KOG1310 WD40 repeat protein [G 99.8 1.8E-18 3.8E-23 143.3 15.7 221 110-339 42-302 (758)
203 KOG1524 WD40 repeat-containing 99.8 7E-18 1.5E-22 139.4 19.1 264 16-336 13-282 (737)
204 KOG1272 WD40-repeat-containing 99.8 2.3E-19 5E-24 145.5 9.8 268 17-330 129-398 (545)
205 PRK01742 tolB translocation pr 99.8 5E-17 1.1E-21 141.2 24.7 234 45-321 183-426 (429)
206 KOG1517 Guanine nucleotide bin 99.8 4E-17 8.7E-22 144.9 23.8 245 72-339 1065-1332(1387)
207 KOG2321 WD40 repeat protein [G 99.8 5.3E-17 1.2E-21 135.3 22.0 284 9-336 43-339 (703)
208 KOG0280 Uncharacterized conser 99.8 1.9E-16 4.2E-21 121.6 22.8 288 32-338 24-331 (339)
209 KOG3881 Uncharacterized conser 99.8 7E-17 1.5E-21 128.6 20.4 249 17-289 55-323 (412)
210 KOG2139 WD40 repeat protein [G 99.8 6.4E-16 1.4E-20 122.1 24.9 248 17-289 98-386 (445)
211 KOG1524 WD40 repeat-containing 99.8 1.1E-17 2.4E-22 138.2 15.4 234 68-336 11-251 (737)
212 KOG1963 WD40 repeat protein [G 99.8 2.3E-16 5E-21 137.6 23.3 234 76-338 21-320 (792)
213 KOG0771 Prolactin regulatory e 99.8 1.5E-17 3.3E-22 133.5 14.8 198 75-289 148-357 (398)
214 KOG1334 WD40 repeat protein [G 99.8 2.5E-17 5.5E-22 134.6 16.0 289 15-338 140-464 (559)
215 KOG2139 WD40 repeat protein [G 99.8 4E-16 8.8E-21 123.2 22.0 237 71-329 98-364 (445)
216 KOG1240 Protein kinase contain 99.8 1.1E-15 2.3E-20 137.9 26.7 306 14-338 1045-1431(1431)
217 KOG1272 WD40-repeat-containing 99.8 6.7E-18 1.4E-22 137.1 10.4 229 71-338 129-360 (545)
218 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-15 2.4E-20 126.6 21.1 254 20-320 126-384 (636)
219 KOG4497 Uncharacterized conser 99.7 5.5E-15 1.2E-19 115.6 23.8 274 17-332 48-424 (447)
220 PRK01742 tolB translocation pr 99.7 4.9E-16 1.1E-20 135.1 20.1 217 16-267 202-427 (429)
221 KOG0644 Uncharacterized conser 99.7 2E-17 4.3E-22 143.4 10.3 239 16-289 189-471 (1113)
222 PRK03629 tolB translocation pr 99.7 1.4E-14 3E-19 125.7 27.4 232 47-321 180-428 (429)
223 KOG3881 Uncharacterized conser 99.7 5.8E-15 1.2E-19 117.8 19.5 244 69-339 53-319 (412)
224 KOG1240 Protein kinase contain 99.7 1.6E-14 3.4E-19 130.6 24.0 258 68-339 1045-1333(1431)
225 PF10282 Lactonase: Lactonase, 99.7 3.1E-12 6.7E-17 108.1 36.8 281 35-339 2-321 (345)
226 PRK02889 tolB translocation pr 99.7 4.6E-14 9.9E-19 122.7 25.4 237 46-321 174-425 (427)
227 KOG0309 Conserved WD40 repeat- 99.7 2.2E-15 4.8E-20 129.4 16.2 302 11-339 18-338 (1081)
228 PRK05137 tolB translocation pr 99.7 1.1E-13 2.4E-18 120.8 27.3 231 47-321 183-433 (435)
229 PRK04922 tolB translocation pr 99.7 1.1E-13 2.3E-18 120.7 26.3 231 47-320 185-432 (433)
230 PRK03629 tolB translocation pr 99.7 6.2E-14 1.4E-18 121.7 24.7 218 16-266 197-428 (429)
231 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-12 2.3E-17 110.9 31.3 266 32-338 5-345 (369)
232 KOG1334 WD40 repeat protein [G 99.7 3.7E-15 8E-20 122.1 15.7 257 68-338 139-422 (559)
233 PF08662 eIF2A: Eukaryotic tra 99.7 1.7E-14 3.6E-19 110.8 18.3 131 187-339 37-178 (194)
234 KOG0280 Uncharacterized conser 99.7 2.2E-14 4.7E-19 110.5 18.1 252 18-288 70-335 (339)
235 PRK02889 tolB translocation pr 99.7 8.5E-14 1.8E-18 121.0 23.8 205 97-332 177-392 (427)
236 KOG2315 Predicted translation 99.6 4E-13 8.7E-18 112.2 25.7 284 10-339 67-389 (566)
237 COG2706 3-carboxymuconate cycl 99.6 1.3E-11 2.8E-16 98.5 32.0 283 33-339 3-320 (346)
238 PRK05137 tolB translocation pr 99.6 4.1E-13 9E-18 117.2 25.4 202 97-330 183-396 (435)
239 PRK04922 tolB translocation pr 99.6 2E-13 4.4E-18 119.0 22.5 217 16-265 202-432 (433)
240 PF08662 eIF2A: Eukaryotic tra 99.6 1.7E-13 3.6E-18 105.3 19.2 153 21-197 9-181 (194)
241 KOG2321 WD40 repeat protein [G 99.6 1.9E-13 4.1E-18 114.5 20.3 237 67-338 47-300 (703)
242 KOG0309 Conserved WD40 repeat- 99.6 3.3E-14 7.2E-19 122.3 13.4 258 10-287 60-340 (1081)
243 KOG1409 Uncharacterized conser 99.6 8.3E-13 1.8E-17 104.1 19.7 246 16-289 23-273 (404)
244 KOG1354 Serine/threonine prote 99.6 8.4E-14 1.8E-18 109.6 13.9 217 14-243 81-360 (433)
245 PF10282 Lactonase: Lactonase, 99.6 1.3E-10 2.8E-15 98.4 33.8 264 14-289 33-325 (345)
246 PRK01029 tolB translocation pr 99.6 1.2E-11 2.7E-16 107.0 28.2 237 49-322 166-426 (428)
247 KOG2314 Translation initiation 99.6 4.8E-12 1E-16 105.9 23.8 292 10-338 243-571 (698)
248 KOG2394 WD40 protein DMR-N9 [G 99.6 3.5E-13 7.5E-18 112.1 17.1 210 89-339 136-361 (636)
249 PRK04792 tolB translocation pr 99.6 7.9E-12 1.7E-16 109.1 26.4 218 68-321 214-447 (448)
250 PRK00178 tolB translocation pr 99.5 2.1E-11 4.5E-16 106.7 27.9 232 49-321 180-428 (430)
251 TIGR02800 propeller_TolB tol-p 99.5 6E-12 1.3E-16 109.9 23.4 204 97-332 171-386 (417)
252 PRK00178 tolB translocation pr 99.5 9.6E-12 2.1E-16 108.8 23.8 219 15-266 196-428 (430)
253 KOG0974 WD-repeat protein WDR6 99.5 2.8E-12 6E-17 114.6 20.1 184 135-339 98-287 (967)
254 PRK04792 tolB translocation pr 99.5 6.7E-12 1.4E-16 109.6 22.1 217 17-266 217-447 (448)
255 TIGR02800 propeller_TolB tol-p 99.5 1.3E-11 2.7E-16 107.9 23.0 215 16-263 188-416 (417)
256 COG2706 3-carboxymuconate cycl 99.5 8.8E-10 1.9E-14 88.1 30.7 266 11-289 33-324 (346)
257 KOG1409 Uncharacterized conser 99.5 5.7E-12 1.2E-16 99.4 17.8 201 16-243 67-271 (404)
258 PF04762 IKI3: IKI3 family; I 99.5 2.5E-10 5.4E-15 106.9 31.2 300 18-338 76-454 (928)
259 KOG0974 WD-repeat protein WDR6 99.5 1.7E-12 3.7E-17 115.8 16.1 181 96-289 109-291 (967)
260 PRK01029 tolB translocation pr 99.5 6.4E-11 1.4E-15 102.7 23.5 222 18-267 185-426 (428)
261 KOG2041 WD40 repeat protein [G 99.4 6.5E-11 1.4E-15 102.3 22.5 280 18-336 15-333 (1189)
262 PF02239 Cytochrom_D1: Cytochr 99.4 1.6E-10 3.5E-15 97.7 24.2 184 137-338 6-200 (369)
263 COG5170 CDC55 Serine/threonine 99.4 7.2E-12 1.6E-16 97.7 14.3 259 14-287 23-368 (460)
264 COG5354 Uncharacterized protei 99.4 3.6E-10 7.8E-15 93.9 24.4 287 10-339 65-394 (561)
265 KOG4547 WD40 repeat-containing 99.4 3.1E-10 6.8E-15 95.9 22.9 189 89-289 6-223 (541)
266 KOG4547 WD40 repeat-containing 99.4 1E-10 2.3E-15 98.7 19.4 185 135-338 4-218 (541)
267 KOG2314 Translation initiation 99.4 1.4E-09 3.1E-14 91.4 25.8 279 18-339 211-524 (698)
268 COG4946 Uncharacterized protei 99.4 1.7E-09 3.8E-14 89.4 25.1 249 45-326 245-504 (668)
269 PF04762 IKI3: IKI3 family; I 99.4 4.1E-09 8.8E-14 98.9 30.9 248 16-289 119-459 (928)
270 TIGR02658 TTQ_MADH_Hv methylam 99.3 3E-08 6.5E-13 82.3 31.7 260 46-339 27-329 (352)
271 COG5170 CDC55 Serine/threonine 99.3 9.2E-11 2E-15 91.7 15.3 247 70-337 25-364 (460)
272 KOG2315 Predicted translation 99.3 2.3E-09 4.9E-14 90.3 24.1 276 17-339 34-343 (566)
273 KOG4532 WD40-like repeat conta 99.3 1.4E-09 3.1E-14 83.4 20.7 220 89-329 85-321 (344)
274 KOG1064 RAVE (regulator of V-A 99.3 2.3E-11 5.1E-16 114.5 13.0 190 70-289 2207-2401(2439)
275 KOG1912 WD40 repeat protein [G 99.3 9.7E-10 2.1E-14 96.0 20.1 235 73-338 17-302 (1062)
276 KOG2041 WD40 repeat protein [G 99.3 2.7E-10 5.9E-15 98.5 15.7 231 69-330 12-278 (1189)
277 KOG1064 RAVE (regulator of V-A 99.3 5.5E-11 1.2E-15 112.1 12.4 185 124-339 2209-2397(2439)
278 COG4946 Uncharacterized protei 99.3 1.1E-08 2.4E-13 84.7 23.7 275 31-339 331-653 (668)
279 KOG4532 WD40-like repeat conta 99.3 8.6E-09 1.9E-13 79.2 21.4 224 32-275 84-321 (344)
280 KOG3914 WD repeat protein WDR4 99.2 1.6E-10 3.5E-15 93.2 12.7 161 19-201 64-229 (390)
281 PLN02919 haloacid dehalogenase 99.2 3.7E-08 8E-13 94.3 30.2 254 75-339 571-887 (1057)
282 PF15492 Nbas_N: Neuroblastoma 99.2 6.2E-08 1.3E-12 75.5 25.6 229 76-339 2-258 (282)
283 COG5354 Uncharacterized protei 99.2 1.2E-08 2.5E-13 85.2 22.4 236 70-338 31-304 (561)
284 PRK04043 tolB translocation pr 99.2 1.4E-08 3.1E-13 87.6 24.1 211 18-262 188-418 (419)
285 KOG4714 Nucleoporin [Nuclear s 99.2 3.9E-10 8.4E-15 86.0 12.6 198 135-338 100-316 (319)
286 PLN02919 haloacid dehalogenase 99.2 7.4E-08 1.6E-12 92.3 30.4 247 21-289 571-891 (1057)
287 KOG1275 PAB-dependent poly(A) 99.2 1.7E-09 3.6E-14 96.1 16.4 179 89-284 148-340 (1118)
288 KOG4190 Uncharacterized conser 99.2 2.7E-10 5.9E-15 95.8 10.4 289 16-337 734-1033(1034)
289 KOG4714 Nucleoporin [Nuclear s 99.2 8.6E-10 1.9E-14 84.1 12.0 145 32-196 101-255 (319)
290 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.1E-06 2.4E-11 73.2 30.8 255 7-289 36-333 (352)
291 PF15492 Nbas_N: Neuroblastoma 99.1 2.8E-07 6.1E-12 71.9 25.1 236 23-289 3-262 (282)
292 PRK04043 tolB translocation pr 99.1 3.2E-07 7E-12 79.4 28.5 192 72-288 188-402 (419)
293 PF08450 SGL: SMP-30/Gluconola 99.1 4.5E-07 9.8E-12 73.2 27.8 225 22-274 4-244 (246)
294 TIGR03300 assembly_YfgL outer 99.1 2.1E-07 4.6E-12 80.2 26.5 258 32-338 105-377 (377)
295 PF08450 SGL: SMP-30/Gluconola 99.1 2E-06 4.3E-11 69.4 30.6 215 76-328 4-243 (246)
296 KOG4190 Uncharacterized conser 99.1 3.5E-10 7.6E-15 95.2 7.8 168 110-289 727-909 (1034)
297 KOG1645 RING-finger-containing 99.1 7.5E-09 1.6E-13 83.9 14.6 94 124-218 194-289 (463)
298 KOG1008 Uncharacterized conser 99.0 1.5E-10 3.3E-15 98.9 3.7 206 70-289 55-278 (783)
299 TIGR03300 assembly_YfgL outer 99.0 2.4E-06 5.2E-11 73.7 28.6 220 32-289 65-300 (377)
300 PF11768 DUF3312: Protein of u 99.0 1.1E-06 2.5E-11 75.4 25.6 127 190-322 239-369 (545)
301 KOG2695 WD40 repeat protein [G 99.0 2.9E-09 6.2E-14 84.6 9.0 184 11-219 206-401 (425)
302 KOG3914 WD repeat protein WDR4 99.0 1.8E-08 4E-13 81.6 13.4 152 171-339 67-222 (390)
303 KOG3617 WD40 and TPR repeat-co 99.0 6.8E-08 1.5E-12 85.7 17.8 112 20-154 18-131 (1416)
304 KOG1912 WD40 repeat protein [G 98.9 2E-07 4.3E-12 82.0 19.2 245 19-287 17-305 (1062)
305 KOG1920 IkappaB kinase complex 98.9 6.4E-07 1.4E-11 82.7 22.7 248 18-289 69-368 (1265)
306 KOG3621 WD40 repeat-containing 98.9 8.4E-07 1.8E-11 77.4 22.0 209 19-250 35-252 (726)
307 PF07433 DUF1513: Protein of u 98.9 7.9E-06 1.7E-10 65.9 25.5 231 71-330 4-276 (305)
308 KOG2695 WD40 repeat protein [G 98.9 9.1E-09 2E-13 81.8 8.5 171 78-265 218-402 (425)
309 PF00930 DPPIV_N: Dipeptidyl p 98.9 3.2E-06 7E-11 72.0 24.3 273 26-329 1-346 (353)
310 KOG1832 HIV-1 Vpr-binding prot 98.8 4.7E-09 1E-13 93.3 5.9 251 16-326 1100-1375(1516)
311 KOG2066 Vacuolar assembly/sort 98.8 6.3E-07 1.4E-11 79.2 18.6 223 71-330 39-278 (846)
312 KOG1275 PAB-dependent poly(A) 98.8 2E-07 4.2E-12 83.5 15.6 187 135-338 146-340 (1118)
313 PF00400 WD40: WD domain, G-be 98.8 1.6E-08 3.5E-13 55.7 5.5 38 246-284 2-39 (39)
314 KOG0882 Cyclophilin-related pe 98.8 9.4E-08 2E-12 78.8 12.0 208 124-338 10-229 (558)
315 KOG1008 Uncharacterized conser 98.8 3.4E-09 7.5E-14 90.8 2.9 197 124-339 57-274 (783)
316 PF00400 WD40: WD domain, G-be 98.8 5.9E-08 1.3E-12 53.4 6.8 38 109-152 2-39 (39)
317 KOG2066 Vacuolar assembly/sort 98.7 2.1E-06 4.6E-11 76.1 17.6 185 17-243 39-234 (846)
318 KOG1920 IkappaB kinase complex 98.6 5.7E-05 1.2E-09 70.4 25.4 200 71-289 68-325 (1265)
319 PF11768 DUF3312: Protein of u 98.6 0.00013 2.7E-09 63.2 25.7 133 97-243 185-330 (545)
320 PRK11138 outer membrane biogen 98.6 6.8E-05 1.5E-09 65.1 24.7 255 33-339 121-393 (394)
321 PF13360 PQQ_2: PQQ-like domai 98.6 0.00011 2.5E-09 58.9 24.3 214 97-339 4-229 (238)
322 PF06977 SdiA-regulated: SdiA- 98.6 0.00016 3.5E-09 57.5 25.5 197 124-338 22-248 (248)
323 KOG1645 RING-finger-containing 98.6 7.6E-07 1.6E-11 72.6 10.1 162 148-326 175-346 (463)
324 PF07433 DUF1513: Protein of u 98.6 0.00025 5.3E-09 57.5 25.5 232 16-279 3-278 (305)
325 KOG2114 Vacuolar assembly/sort 98.5 7.8E-05 1.7E-09 67.0 22.8 208 24-256 30-257 (933)
326 KOG2114 Vacuolar assembly/sort 98.5 6E-05 1.3E-09 67.7 21.9 195 78-289 30-246 (933)
327 PF04053 Coatomer_WDAD: Coatom 98.5 0.0002 4.4E-09 62.2 24.9 221 69-339 30-261 (443)
328 KOG0882 Cyclophilin-related pe 98.5 1.6E-06 3.5E-11 71.7 11.0 205 68-289 6-234 (558)
329 KOG1832 HIV-1 Vpr-binding prot 98.5 1.9E-07 4.1E-12 83.4 6.0 161 109-289 1092-1258(1516)
330 PF03178 CPSF_A: CPSF A subuni 98.5 0.0004 8.7E-09 58.5 25.8 222 97-336 3-261 (321)
331 PF08596 Lgl_C: Lethal giant l 98.5 0.00016 3.4E-09 62.0 23.2 268 19-326 3-322 (395)
332 PF13360 PQQ_2: PQQ-like domai 98.4 0.00044 9.5E-09 55.5 23.5 207 6-244 11-232 (238)
333 PF03178 CPSF_A: CPSF A subuni 98.4 0.00062 1.3E-08 57.3 24.3 212 9-239 13-262 (321)
334 KOG3617 WD40 and TPR repeat-co 98.4 1.3E-05 2.9E-10 71.8 13.9 107 74-195 18-131 (1416)
335 PF04841 Vps16_N: Vps16, N-ter 98.3 0.00084 1.8E-08 58.2 24.0 192 97-322 62-271 (410)
336 PRK11138 outer membrane biogen 98.3 0.00059 1.3E-08 59.3 22.5 137 136-285 256-393 (394)
337 PRK02888 nitrous-oxide reducta 98.3 0.0016 3.5E-08 58.0 24.0 102 176-287 287-405 (635)
338 PF06977 SdiA-regulated: SdiA- 98.2 0.0016 3.4E-08 51.9 22.5 198 69-283 19-247 (248)
339 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.003 6.5E-08 54.0 24.8 238 17-276 42-348 (353)
340 PF06433 Me-amine-dh_H: Methyl 98.2 0.0027 5.9E-08 52.3 24.7 245 22-289 40-323 (342)
341 COG0823 TolB Periplasmic compo 98.1 0.00036 7.7E-09 60.4 17.5 220 17-265 192-423 (425)
342 PF08596 Lgl_C: Lethal giant l 98.1 0.0014 3.1E-08 56.2 20.7 201 125-339 3-289 (395)
343 PF04053 Coatomer_WDAD: Coatom 98.1 0.0013 2.7E-08 57.4 20.4 219 17-288 32-264 (443)
344 PF08553 VID27: VID27 cytoplas 98.1 0.0011 2.3E-08 61.2 20.0 147 135-287 492-648 (794)
345 PF14583 Pectate_lyase22: Olig 98.0 0.0054 1.2E-07 51.5 26.2 273 23-337 41-378 (386)
346 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0018 4E-08 43.8 14.5 102 126-237 2-109 (111)
347 COG0823 TolB Periplasmic compo 98.0 0.0014 3E-08 56.9 17.6 156 124-289 193-361 (425)
348 KOG3621 WD40 repeat-containing 97.9 8E-05 1.7E-09 65.5 9.8 113 212-338 35-152 (726)
349 PF14583 Pectate_lyase22: Olig 97.9 0.0076 1.6E-07 50.7 20.8 221 76-326 40-298 (386)
350 PRK02888 nitrous-oxide reducta 97.9 0.0092 2E-07 53.4 21.6 170 145-339 214-403 (635)
351 KOG4640 Anaphase-promoting com 97.9 0.00011 2.4E-09 63.9 9.3 92 211-320 21-115 (665)
352 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0089 1.9E-07 52.0 21.1 51 147-198 62-112 (410)
353 PF02897 Peptidase_S9_N: Proly 97.8 0.017 3.8E-07 50.6 25.6 247 22-289 128-407 (414)
354 PF08553 VID27: VID27 cytoplas 97.8 0.00099 2.1E-08 61.4 15.3 139 177-333 493-641 (794)
355 KOG4640 Anaphase-promoting com 97.7 0.00023 5.1E-09 62.0 9.2 93 124-220 21-115 (665)
356 smart00320 WD40 WD40 repeats. 97.7 0.00012 2.6E-09 39.2 4.9 38 246-284 3-40 (40)
357 COG3386 Gluconolactonase [Carb 97.7 0.022 4.7E-07 47.3 23.8 227 24-276 31-276 (307)
358 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0067 1.5E-07 41.2 13.7 102 213-336 2-110 (111)
359 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.016 3.5E-07 45.4 24.0 107 32-163 23-132 (354)
360 PF06433 Me-amine-dh_H: Methyl 97.6 0.032 7E-07 46.2 24.0 261 46-339 17-319 (342)
361 KOG2444 WD40 repeat protein [G 97.5 0.00012 2.5E-09 55.9 4.2 140 179-339 32-176 (238)
362 smart00320 WD40 WD40 repeats. 97.5 0.00044 9.6E-09 36.8 5.6 37 110-152 4-40 (40)
363 PF05096 Glu_cyclase_2: Glutam 97.5 0.031 6.7E-07 44.6 22.6 189 68-275 39-250 (264)
364 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.018 3.9E-07 45.2 15.3 123 135-265 22-145 (354)
365 PF02897 Peptidase_S9_N: Proly 97.5 0.066 1.4E-06 46.9 26.0 159 125-289 125-312 (414)
366 KOG4441 Proteins containing BT 97.4 0.041 8.9E-07 50.1 19.7 233 32-289 285-549 (571)
367 KOG2395 Protein involved in va 97.4 0.0044 9.5E-08 53.4 12.4 143 138-287 348-501 (644)
368 COG3490 Uncharacterized protei 97.4 0.044 9.4E-07 43.8 22.1 211 68-289 64-313 (366)
369 PHA02713 hypothetical protein; 97.4 0.025 5.5E-07 51.4 18.1 185 89-289 305-536 (557)
370 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00057 1.2E-08 38.6 4.8 38 10-54 4-41 (47)
371 PRK13616 lipoprotein LpqB; Pro 97.3 0.074 1.6E-06 48.5 20.2 194 19-233 351-560 (591)
372 PF00780 CNH: CNH domain; Int 97.3 0.064 1.4E-06 44.1 26.2 226 32-289 7-258 (275)
373 PHA02713 hypothetical protein; 97.2 0.029 6.3E-07 51.0 16.6 141 89-243 353-534 (557)
374 COG3204 Uncharacterized protei 97.2 0.084 1.8E-06 42.5 21.0 162 124-288 86-265 (316)
375 PRK13616 lipoprotein LpqB; Pro 97.2 0.19 4E-06 46.0 21.4 184 124-335 350-563 (591)
376 COG5276 Uncharacterized conser 97.2 0.092 2E-06 42.2 24.1 155 124-289 87-244 (370)
377 KOG1897 Damage-specific DNA bi 97.1 0.23 4.9E-06 46.7 28.6 224 88-336 684-938 (1096)
378 KOG2444 WD40 repeat protein [G 97.1 0.0014 3E-08 50.2 5.9 145 138-289 32-180 (238)
379 PF14870 PSII_BNR: Photosynthe 97.1 0.11 2.5E-06 42.8 28.8 285 8-337 7-301 (302)
380 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.16 3.5E-06 44.0 28.8 155 31-195 36-204 (418)
381 KOG2377 Uncharacterized conser 97.0 0.18 3.9E-06 43.2 17.6 106 15-140 64-169 (657)
382 PF12894 Apc4_WD40: Anaphase-p 97.0 0.004 8.7E-08 35.2 5.6 30 124-154 12-41 (47)
383 COG3386 Gluconolactonase [Carb 97.0 0.17 3.6E-06 42.1 18.7 152 130-287 31-194 (307)
384 COG3204 Uncharacterized protei 97.0 0.14 3.1E-06 41.2 19.5 196 69-280 83-306 (316)
385 PF00780 CNH: CNH domain; Int 96.9 0.17 3.7E-06 41.6 23.7 139 89-243 8-166 (275)
386 KOG2395 Protein involved in va 96.9 0.034 7.5E-07 48.2 12.7 134 179-331 348-492 (644)
387 PF14870 PSII_BNR: Photosynthe 96.9 0.2 4.4E-06 41.4 22.7 232 20-283 64-301 (302)
388 PF07995 GSDH: Glucose / Sorbo 96.8 0.26 5.6E-06 41.7 22.2 79 247-335 245-330 (331)
389 COG3391 Uncharacterized conser 96.8 0.29 6.4E-06 42.3 29.0 244 17-289 30-286 (381)
390 COG3391 Uncharacterized conser 96.8 0.3 6.4E-06 42.3 24.2 195 126-337 33-236 (381)
391 PF05694 SBP56: 56kDa selenium 96.8 0.29 6.3E-06 42.0 23.1 254 8-275 52-393 (461)
392 KOG4499 Ca2+-binding protein R 96.8 0.18 3.8E-06 39.3 14.3 100 70-175 156-262 (310)
393 KOG4441 Proteins containing BT 96.7 0.21 4.6E-06 45.5 17.3 191 32-243 333-547 (571)
394 PF10647 Gmad1: Lipoprotein Lp 96.7 0.24 5.1E-06 40.1 18.8 151 168-329 25-184 (253)
395 cd00216 PQQ_DH Dehydrogenases 96.7 0.46 1E-05 42.7 26.0 141 135-289 227-427 (488)
396 KOG2079 Vacuolar assembly/sort 96.6 0.012 2.7E-07 55.0 8.7 104 177-288 99-205 (1206)
397 KOG1897 Damage-specific DNA bi 96.6 0.65 1.4E-05 43.8 27.8 277 32-336 684-1000(1096)
398 KOG2079 Vacuolar assembly/sort 96.6 0.01 2.2E-07 55.6 8.0 66 222-289 98-163 (1206)
399 PF15390 DUF4613: Domain of un 96.6 0.46 1E-05 42.2 17.4 128 68-197 53-188 (671)
400 PRK13684 Ycf48-like protein; P 96.6 0.39 8.6E-06 40.7 31.2 278 14-337 42-328 (334)
401 PRK10115 protease 2; Provision 96.5 0.77 1.7E-05 43.1 31.0 246 19-289 128-397 (686)
402 PHA03098 kelch-like protein; P 96.5 0.62 1.4E-05 42.5 18.8 142 89-243 344-512 (534)
403 KOG2280 Vacuolar assembly/sort 96.4 0.63 1.4E-05 42.6 17.6 177 97-289 65-249 (829)
404 PF12234 Rav1p_C: RAVE protein 96.4 0.14 2.9E-06 46.6 13.8 109 224-337 41-153 (631)
405 cd00216 PQQ_DH Dehydrogenases 96.4 0.7 1.5E-05 41.5 26.4 155 89-251 112-327 (488)
406 PF05694 SBP56: 56kDa selenium 96.3 0.61 1.3E-05 40.2 21.5 195 89-289 88-345 (461)
407 PF10168 Nup88: Nuclear pore c 96.3 0.28 6.1E-06 45.8 15.5 77 210-289 84-182 (717)
408 PHA03098 kelch-like protein; P 96.2 0.61 1.3E-05 42.5 17.3 185 89-289 296-514 (534)
409 KOG3630 Nuclear pore complex, 96.1 0.14 3.1E-06 48.7 12.5 145 171-327 106-260 (1405)
410 PF10313 DUF2415: Uncharacteri 96.1 0.022 4.7E-07 31.2 4.5 32 211-243 1-34 (43)
411 PF15390 DUF4613: Domain of un 96.1 1 2.2E-05 40.2 25.6 125 10-154 52-186 (671)
412 PF12234 Rav1p_C: RAVE protein 96.0 0.71 1.5E-05 42.2 16.0 114 125-243 31-157 (631)
413 COG5276 Uncharacterized conser 96.0 0.67 1.5E-05 37.5 28.6 280 11-338 80-367 (370)
414 COG3490 Uncharacterized protei 96.0 0.67 1.4E-05 37.4 19.7 249 6-286 56-348 (366)
415 PF05096 Glu_cyclase_2: Glutam 95.9 0.69 1.5E-05 37.2 23.8 195 9-229 34-249 (264)
416 PHA02790 Kelch-like protein; P 95.8 1.3 2.9E-05 39.7 17.7 139 89-243 320-471 (480)
417 PF10313 DUF2415: Uncharacteri 95.8 0.065 1.4E-06 29.4 5.6 32 124-155 1-34 (43)
418 KOG2377 Uncharacterized conser 95.8 1.1 2.4E-05 38.7 17.3 155 127-287 26-186 (657)
419 PF10214 Rrn6: RNA polymerase 95.7 2 4.4E-05 41.1 25.8 168 69-243 77-277 (765)
420 KOG3630 Nuclear pore complex, 95.5 0.34 7.4E-06 46.3 12.4 151 70-228 99-260 (1405)
421 COG5167 VID27 Protein involved 95.5 0.42 9.2E-06 41.7 12.1 147 135-289 478-635 (776)
422 PF08728 CRT10: CRT10; InterP 95.5 1.9 4.1E-05 40.1 16.8 114 168-286 102-246 (717)
423 PF10647 Gmad1: Lipoprotein Lp 95.5 1.1 2.4E-05 36.3 23.4 152 125-282 25-192 (253)
424 PHA02790 Kelch-like protein; P 95.4 1.9 4.1E-05 38.8 17.5 181 89-289 273-473 (480)
425 KOG2247 WD40 repeat-containing 95.2 0.0087 1.9E-07 51.2 1.3 240 20-289 37-283 (615)
426 PF08728 CRT10: CRT10; InterP 95.2 2.6 5.7E-05 39.1 16.6 106 222-339 113-245 (717)
427 PF14761 HPS3_N: Hermansky-Pud 95.0 1.3 2.8E-05 34.3 13.1 102 44-156 36-165 (215)
428 KOG1900 Nuclear pore complex, 94.9 0.93 2E-05 44.3 13.4 138 44-197 97-274 (1311)
429 PF14781 BBS2_N: Ciliary BBSom 94.8 0.95 2.1E-05 32.1 13.3 122 24-161 5-132 (136)
430 KOG1898 Splicing factor 3b, su 94.7 4.1 8.8E-05 39.2 16.6 171 8-196 863-1049(1205)
431 COG3823 Glutamine cyclotransfe 94.7 1.5 3.3E-05 33.7 13.9 176 89-275 57-248 (262)
432 KOG2247 WD40 repeat-containing 94.6 0.0042 9.1E-08 53.0 -2.1 140 127-277 38-179 (615)
433 KOG4460 Nuclear pore complex, 94.4 0.86 1.9E-05 40.0 10.9 75 212-289 105-201 (741)
434 PLN00033 photosystem II stabil 94.2 3.4 7.4E-05 35.9 18.4 152 20-192 241-396 (398)
435 PF14761 HPS3_N: Hermansky-Pud 94.1 2.2 4.7E-05 33.1 17.6 160 171-339 22-213 (215)
436 PRK13684 Ycf48-like protein; P 93.7 3.8 8.3E-05 34.8 23.3 152 124-285 173-330 (334)
437 KOG3616 Selective LIM binding 93.7 6 0.00013 36.8 15.9 68 17-103 14-82 (1636)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 93.6 4.5 9.9E-05 35.3 27.5 94 76-175 6-117 (415)
439 TIGR02604 Piru_Ver_Nterm putat 93.6 4.3 9.4E-05 35.0 16.6 145 124-275 14-202 (367)
440 TIGR02604 Piru_Ver_Nterm putat 93.5 4.6 9.9E-05 34.9 16.2 153 18-183 14-201 (367)
441 PF14655 RAB3GAP2_N: Rab3 GTPa 93.0 2.6 5.7E-05 36.7 11.8 76 124-202 308-405 (415)
442 PRK10115 protease 2; Provision 92.9 8.6 0.00019 36.4 29.4 193 73-287 128-345 (686)
443 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.8 7.5 0.00016 35.4 25.6 53 147-199 272-337 (527)
444 PF07676 PD40: WD40-like Beta 92.8 0.71 1.5E-05 24.7 5.5 33 251-283 4-38 (39)
445 KOG2280 Vacuolar assembly/sort 92.6 5.8 0.00013 36.8 13.5 83 144-228 62-144 (829)
446 KOG1916 Nuclear protein, conta 92.6 0.21 4.6E-06 46.5 4.9 103 68-175 129-233 (1283)
447 PF02333 Phytase: Phytase; In 92.3 6.7 0.00015 33.7 22.7 188 135-338 67-288 (381)
448 PF10395 Utp8: Utp8 family; I 92.2 9.6 0.00021 35.3 19.3 174 10-199 122-309 (670)
449 KOG4460 Nuclear pore complex, 92.2 2 4.3E-05 37.9 9.8 82 257-339 105-197 (741)
450 PF10168 Nup88: Nuclear pore c 92.0 11 0.00025 35.6 24.3 70 124-195 85-179 (717)
451 TIGR03548 mutarot_permut cycli 91.8 7.1 0.00015 33.0 17.4 90 89-186 125-233 (323)
452 PF10214 Rrn6: RNA polymerase 91.7 13 0.00028 35.8 23.1 101 209-322 144-258 (765)
453 PF12657 TFIIIC_delta: Transcr 91.6 2 4.4E-05 32.4 8.6 31 167-197 86-123 (173)
454 COG4590 ABC-type uncharacteriz 91.4 1.4 2.9E-05 38.1 7.9 158 72-243 221-387 (733)
455 KOG1900 Nuclear pore complex, 91.2 6.5 0.00014 38.9 12.9 143 143-289 96-275 (1311)
456 PF12768 Rax2: Cortical protei 91.0 7.9 0.00017 31.9 12.0 98 146-243 16-124 (281)
457 TIGR03548 mutarot_permut cycli 90.8 9.1 0.0002 32.3 20.1 64 135-198 123-197 (323)
458 PF12657 TFIIIC_delta: Transcr 90.4 2.4 5.1E-05 32.1 8.0 32 257-288 87-123 (173)
459 KOG1916 Nuclear protein, conta 90.2 0.24 5.1E-06 46.2 2.7 140 144-289 109-268 (1283)
460 PF07569 Hira: TUP1-like enhan 90.2 1.8 4E-05 34.1 7.4 65 222-289 21-98 (219)
461 TIGR03547 muta_rot_YjhT mutatr 89.9 12 0.00025 32.0 21.8 41 146-186 168-210 (346)
462 COG5167 VID27 Protein involved 89.8 14 0.0003 32.9 16.3 138 89-242 480-632 (776)
463 PLN02153 epithiospecifier prot 89.5 12 0.00027 31.8 19.1 136 89-231 87-260 (341)
464 KOG4499 Ca2+-binding protein R 89.3 9.3 0.0002 30.2 18.9 172 89-266 71-264 (310)
465 PRK14131 N-acetylneuraminic ac 89.0 14 0.00031 31.9 20.5 39 147-185 190-230 (376)
466 PF07569 Hira: TUP1-like enhan 88.9 3 6.4E-05 32.9 7.7 70 263-338 18-93 (219)
467 COG5290 IkappaB kinase complex 88.8 8.1 0.00017 36.2 10.9 96 128-229 251-355 (1243)
468 PLN02193 nitrile-specifier pro 88.4 18 0.0004 32.4 18.7 104 89-198 230-354 (470)
469 COG4590 ABC-type uncharacteriz 87.6 4.7 0.0001 35.0 8.4 160 162-339 216-385 (733)
470 KOG1896 mRNA cleavage and poly 87.4 33 0.00071 34.2 20.4 141 97-242 1066-1213(1366)
471 PF12768 Rax2: Cortical protei 87.4 15 0.00033 30.3 12.6 92 97-197 17-125 (281)
472 COG5290 IkappaB kinase complex 87.2 10 0.00022 35.6 10.6 101 23-144 252-357 (1243)
473 TIGR03547 muta_rot_YjhT mutatr 86.6 19 0.00041 30.7 22.4 91 89-186 19-128 (346)
474 TIGR02276 beta_rpt_yvtn 40-res 86.1 2.7 5.9E-05 22.6 4.5 25 265-289 1-25 (42)
475 PLN00033 photosystem II stabil 84.6 27 0.00058 30.6 29.0 109 210-337 280-396 (398)
476 KOG1983 Tomosyn and related SN 84.5 46 0.00099 33.2 15.2 34 12-52 30-63 (993)
477 PF02333 Phytase: Phytase; In 84.3 26 0.00057 30.2 20.7 152 97-251 128-299 (381)
478 KOG1896 mRNA cleavage and poly 83.7 50 0.0011 33.0 25.1 145 137-289 1047-1216(1366)
479 smart00564 PQQ beta-propeller 82.3 4.2 9.1E-05 20.4 3.9 25 137-161 7-31 (33)
480 TIGR02171 Fb_sc_TIGR02171 Fibr 82.2 23 0.00051 34.1 10.9 86 186-275 328-418 (912)
481 PF14781 BBS2_N: Ciliary BBSom 82.2 16 0.00034 26.1 12.2 86 217-319 5-101 (136)
482 TIGR02276 beta_rpt_yvtn 40-res 82.2 5.9 0.00013 21.2 5.7 39 135-174 2-41 (42)
483 PF10433 MMS1_N: Mono-function 82.0 40 0.00087 30.6 24.8 251 32-320 222-503 (504)
484 PF07676 PD40: WD40-like Beta 81.6 5.6 0.00012 21.0 4.4 29 17-51 8-38 (39)
485 PLN02153 epithiospecifier prot 80.6 35 0.00076 29.1 17.4 64 135-198 85-170 (341)
486 TIGR03118 PEPCTERM_chp_1 conse 80.6 32 0.00069 28.6 19.7 204 75-289 26-282 (336)
487 PF11715 Nup160: Nucleoporin N 80.4 9.2 0.0002 35.1 8.0 33 257-289 216-251 (547)
488 PF09826 Beta_propel: Beta pro 80.0 48 0.001 30.3 24.3 175 146-338 304-516 (521)
489 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.9 49 0.0011 30.3 21.7 150 137-289 121-336 (527)
490 PF03088 Str_synth: Strictosid 79.8 14 0.0003 24.3 6.4 65 259-337 1-85 (89)
491 PF08954 DUF1900: Domain of un 79.6 18 0.00039 26.0 7.5 83 15-111 8-91 (136)
492 KOG1898 Splicing factor 3b, su 78.4 72 0.0016 31.4 18.3 181 97-289 854-1051(1205)
493 PF12341 DUF3639: Protein of u 78.2 6.3 0.00014 19.2 3.3 24 19-51 3-26 (27)
494 PF01011 PQQ: PQQ enzyme repea 78.2 7.6 0.00017 20.5 4.2 26 138-163 2-27 (38)
495 PF07250 Glyoxal_oxid_N: Glyox 78.1 34 0.00074 27.5 11.4 135 149-289 49-200 (243)
496 PF03022 MRJP: Major royal jel 77.6 40 0.00086 28.0 17.1 172 147-328 35-253 (287)
497 COG5308 NUP170 Nuclear pore co 77.4 54 0.0012 31.7 11.4 141 143-289 99-278 (1263)
498 PF14727 PHTB1_N: PTHB1 N-term 77.2 51 0.0011 29.1 27.4 253 9-289 63-363 (418)
499 PLN02193 nitrile-specifier pro 77.0 56 0.0012 29.4 17.3 104 89-198 280-413 (470)
500 PF11715 Nup160: Nucleoporin N 76.8 18 0.00038 33.3 8.6 65 135-199 157-252 (547)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-52 Score=328.38 Aligned_cols=285 Identities=24% Similarity=0.347 Sum_probs=253.2
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|..+|.|++|+|+ +..||+|+ .|.++++||++.++..+.. .+|...|.|++|+||+ +.||+|
T Consensus 113 GH~e~Vl~~~fsp~---g~~l~tGs----GD~TvR~WD~~TeTp~~t~-----KgH~~WVlcvawsPDg-----k~iASG 175 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPT---GSRLVTGS----GDTTVRLWDLDTETPLFTC-----KGHKNWVLCVAWSPDG-----KKIASG 175 (480)
T ss_pred CCCCcEEEEEecCC---CceEEecC----CCceEEeeccCCCCcceee-----cCCccEEEEEEECCCc-----chhhcc
Confidence 36789999999999 99999999 7999999999988887776 8999999999999999 899999
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC----CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF----DTRRVATCSVDTTCVIWDIDREILETQLVAHDRE 168 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 168 (339)
+ + +|++||.++++ .....+.+|+ ..|++++|.|. ...+||+++.||.|+|||+..+.++..+.+|+.+
T Consensus 176 ~~dg~I~lwdpktg~-~~g~~l~gH~-----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQ-QIGRALRGHK-----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred ccCCeEEEecCCCCC-cccccccCcc-----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 8 4 99999999887 3557889998 99999999873 5679999999999999999999999999999999
Q ss_pred eeEEEecCCcEEEEEeCCCcEEEEECCCCcceee----------------------------------------------
Q 040307 169 VYDISWGGFNVFASVSGDCSVRVFDLRDKERSTI---------------------------------------------- 202 (339)
Q Consensus 169 v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------------------------------------------- 202 (339)
|+|++|-...+|++++.|++|++|+...+.....
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 9999998777999999999999999866421100
Q ss_pred ---------E-----------E----------eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 203 ---------I-----------Y----------ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 203 ---------~-----------~----------~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
+ . ...+|...|+.+.|+| +++++|+++.|.. |++||.++ ++.+.+++
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkS-VkLW~g~t-Gk~lasfR 406 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKS-VKLWDGRT-GKFLASFR 406 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccc-eeeeeCCC-cchhhhhh
Confidence 0 0 0123667899999999 9999999999999 99999998 78899999
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN 332 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~ 332 (339)
+|-+.|+.++|+.|. ++|++|+.|.++++|++++.+ -..-+.+|...|.++.|+|||+.+++++.|.
T Consensus 407 GHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK------------l~~DLpGh~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK------------LKQDLPGHADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred hccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee------------ecccCCCCCceEEEEEecCCCceeecCCCce
Confidence 999999999999998 699999999999999999987 2335568999999999999999888999999
Q ss_pred eEEEEe
Q 040307 333 KLQLLK 338 (339)
Q Consensus 333 ~v~~w~ 338 (339)
.+++|+
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999996
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-49 Score=313.32 Aligned_cols=282 Identities=19% Similarity=0.283 Sum_probs=252.8
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
...||..+.||++ ++.||+|++ +|.++||+...- .... ++ .+|...|.++.|+|..+. .-+|+|+
T Consensus 174 d~rPis~~~fS~d---s~~laT~sw----sG~~kvW~~~~~--~~~~--~l-~gH~~~v~~~~fhP~~~~---~~lat~s 238 (459)
T KOG0272|consen 174 DTRPISGCSFSRD---SKHLATGSW----SGLVKVWSVPQC--NLLQ--TL-RGHTSRVGAAVFHPVDSD---LNLATAS 238 (459)
T ss_pred CCCcceeeEeecC---CCeEEEeec----CCceeEeecCCc--ceeE--EE-eccccceeeEEEccCCCc---cceeeec
Confidence 4579999999999 999999995 999999665443 3333 44 799999999999998311 6788887
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
| ++++|++++.. ++..+.+|. ..|..++|+| +|++|++++.|.+-++||++++..+....+|...|.+++
T Consensus 239 ~Dgtvklw~~~~e~--~l~~l~gH~-----~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 239 ADGTVKLWKLSQET--PLQDLEGHL-----ARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA 310 (459)
T ss_pred cCCceeeeccCCCc--chhhhhcch-----hhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence 5 99999999886 889999998 8999999999 999999999999999999999998888899999999999
Q ss_pred ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
|+ +|.++++|+.|..-+|||+|++++... ..+ |..+|.+++|+| +|..||+|+.|+. ++|||++. ..++..+.
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~-L~g--H~k~I~~V~fsP-NGy~lATgs~Dnt-~kVWDLR~-r~~ly~ip 384 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMF-LAG--HIKEILSVAFSP-NGYHLATGSSDNT-CKVWDLRM-RSELYTIP 384 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEE-ecc--cccceeeEeECC-CceEEeecCCCCc-EEEeeecc-cccceecc
Confidence 99 899999999999999999999985443 444 789999999999 9999999999999 99999998 66799999
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN 332 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~ 332 (339)
+|..-|+.|.|+|..+++|+|++.|++++||...+.. ......+|.+.|.+++.+|+++.+++++.|+
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~------------~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS------------PLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCCcc------------cchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 9999999999999666899999999999999999988 2336679999999999999999999999999
Q ss_pred eEEEEe
Q 040307 333 KLQLLK 338 (339)
Q Consensus 333 ~v~~w~ 338 (339)
++++|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
No 3
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=100.00 E-value=6.4e-45 Score=275.57 Aligned_cols=325 Identities=50% Similarity=0.915 Sum_probs=290.1
Q ss_pred CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
.++++++.|..+.+++++.|+...+...+||.|++..++.++|.|..++.+++++... -.+.|.-+++.+.|.|+..+
T Consensus 33 ~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g 110 (364)
T KOG0290|consen 33 PRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKG 110 (364)
T ss_pred cccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccc
Confidence 4678899999999999999996655688999999999999999999999888887763 33689999999999999988
Q ss_pred CCCCeEEEeCCcEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eee
Q 040307 86 LNPDIVATSGDSLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LET 160 (339)
Q Consensus 86 ~~~~~la~~~~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~ 160 (339)
.+|++||+++|.+|+|.+.. .+..+...+..++...++.+++++.|+..+.++|.+++-|-+..|||++++. ...
T Consensus 111 ~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 111 VYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred cCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 89999999999999999984 4455566777788888899999999998899999999999999999999874 356
Q ss_pred eeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307 161 QLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV 238 (339)
Q Consensus 161 ~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i 238 (339)
++-+|..+|.+++|. .-+.|++.+.||.+|+||+|..+....+++.+....+...++|++++.+++|+-..|...|.|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 677899999999999 367999999999999999999999999999877678999999999999999999988888999
Q ss_pred EecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe
Q 040307 239 LDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW 318 (339)
Q Consensus 239 ~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 318 (339)
.|+|.+..++..+++|.+.|++++|.|.....|++++.|..+.+||+...... ....|++.+...+.|+.+.|
T Consensus 271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-------~~~dPilay~a~~EVNqi~W 343 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-------NGEDPILAYTAGGEVNQIQW 343 (364)
T ss_pred EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc-------CCCCchhhhhccceeeeeee
Confidence 99999999999999999999999999998889999999999999999886611 13457777788889999999
Q ss_pred cCCCCceEEEecCCeEEEEeC
Q 040307 319 SPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 319 ~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|..+..++.+.++.+.+.+|
T Consensus 344 s~~~~Dwiai~~~kkleiLRV 364 (364)
T KOG0290|consen 344 SSSQPDWIAICFGKKLEILRV 364 (364)
T ss_pred cccCCCEEEEEecCeeeEEeC
Confidence 999999999999999998875
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.9e-44 Score=263.48 Aligned_cols=270 Identities=17% Similarity=0.217 Sum_probs=235.2
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-CCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcce
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-PYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTE 109 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~ 109 (339)
.-+|++++ +|.+|++ |+..++.+.. . ..| ...|+.|...|++ +.||+++. .|++||+++....
T Consensus 10 ~viLvsA~----YDhTIRf--Wqa~tG~C~r--T--iqh~dsqVNrLeiTpdk-----~~LAaa~~qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 10 PVILVSAG----YDHTIRF--WQALTGICSR--T--IQHPDSQVNRLEITPDK-----KDLAAAGNQHVRLYDLNSNNPN 74 (311)
T ss_pred ceEEEecc----Ccceeee--eehhcCeEEE--E--EecCccceeeEEEcCCc-----chhhhccCCeeEEEEccCCCCC
Confidence 55899999 7999999 5555666665 2 344 4679999999999 89999997 9999999998877
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCc
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCS 188 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 188 (339)
++.++.+|. ..|+.+.|.. +++.+++|++||+++|||++...+.+.++ |..+|+++..+ +...|++|..+|.
T Consensus 75 Pv~t~e~h~-----kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 75 PVATFEGHT-----KNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred ceeEEeccC-----CceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence 999999998 8999999996 99999999999999999999977777775 78999999999 6778999999999
Q ss_pred EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC-----CCceEEEecCCCCeeEEEe
Q 040307 189 VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP-----TNPVVVLSKHEGSVNGISW 263 (339)
Q Consensus 189 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~ 263 (339)
|++||++.......+... ....+.++...| +|.+++++...|+ .++|++-.. -.|+.+++.|.+.+..+.+
T Consensus 148 irvWDl~~~~c~~~liPe--~~~~i~sl~v~~-dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l 223 (311)
T KOG0315|consen 148 IRVWDLGENSCTHELIPE--DDTSIQSLTVMP-DGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQAHNGHILRCLL 223 (311)
T ss_pred EEEEEccCCccccccCCC--CCcceeeEEEcC-CCcEEEEecCCcc-EEEEEccCCCccccceEhhheecccceEEEEEE
Confidence 999999998755544433 557899999998 9999999999999 999998652 2577889999999999999
Q ss_pred ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 264 APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 264 ~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
||++ ++||+++.|.+++||+.+... .-...+.+|+..+.+.+||.+++||++++.|+.+|+|++
T Consensus 224 SPd~-k~lat~ssdktv~iwn~~~~~-----------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 224 SPDV-KYLATCSSDKTVKIWNTDDFF-----------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred CCCC-cEEEeecCCceEEEEecCCce-----------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 9999 799999999999999999873 012456689999999999999999999999999999985
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-44 Score=280.21 Aligned_cols=240 Identities=19% Similarity=0.290 Sum_probs=208.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.++|.|++|+|++ ..||+|++ ++++||+.+.. +..+.++|. .-|.+++|+| |++.||+|+.|
T Consensus 112 ~GH~e~Vl~~~fsp~g-----~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~-----~WVlcvawsP-Dgk~iASG~~d 178 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTG-----SRLVTGSGDTTVRLWDLDTET--PLFTCKGHK-----NWVLCVAWSP-DGKKIASGSKD 178 (480)
T ss_pred CCCCCcEEEEEecCCC-----ceEEecCCCceEEeeccCCCC--cceeecCCc-----cEEEEEEECC-CcchhhccccC
Confidence 5899999999999999 89999984 99999999987 899999999 8999999999 99999999999
Q ss_pred CeEEEEECCCCeee-eeeeccCCceeEEEecC------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307 146 TTCVIWDIDREILE-TQLVAHDREVYDISWGG------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 146 ~~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (339)
|.|++||.++++++ ..+.+|...|++++|.| ..+|++++.||.++|||+..+.....+ .+|..+|+|+.|
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l---sgHT~~VTCvrw 255 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL---SGHTASVTCVRW 255 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe---ccCccceEEEEE
Confidence 99999999988754 67899999999999973 678999999999999999987743332 237788888888
Q ss_pred ecCCCCeEEEEeeCCCeEEEEecCCC------------------------------------------------------
Q 040307 219 NKADPRFMATVGMDSNKVVVLDIRFP------------------------------------------------------ 244 (339)
Q Consensus 219 ~p~~~~~l~~~~~d~~~i~i~d~~~~------------------------------------------------------ 244 (339)
- ...+|++|+.|++ |++|+...+
T Consensus 256 G--G~gliySgS~Drt-Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 256 G--GEGLIYSGSQDRT-IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred c--CCceEEecCCCce-EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 5 4567777777777 777776541
Q ss_pred ------------------------CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307 245 ------------------------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 245 ------------------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
.+|+..+.+|..-|+.+.||||+ +++|+++.|..|++|+.++++
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk----------- 400 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGK----------- 400 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcc-----------
Confidence 24566778899999999999999 799999999999999999998
Q ss_pred ccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..-.+.+|-+.|+.++|+.|.+.|++++.|.++++|+|
T Consensus 401 -~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 401 -FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred -hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 22355679999999999999998999999999999986
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9e-42 Score=258.62 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=240.9
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|...|+++.|++| .++|++++ .||.+.|||--........ .-....|...+|+|.+ .++|+|
T Consensus 53 GH~~Ki~~~~ws~D---sr~ivSaS----qDGklIvWDs~TtnK~hai-----pl~s~WVMtCA~sPSg-----~~VAcG 115 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTD---SRRIVSAS----QDGKLIVWDSFTTNKVHAI-----PLPSSWVMTCAYSPSG-----NFVACG 115 (343)
T ss_pred ccccceeeeEecCC---cCeEEeec----cCCeEEEEEcccccceeEE-----ecCceeEEEEEECCCC-----CeEEec
Confidence 46789999999999 99999999 8999999775443332222 3346689999999999 899999
Q ss_pred C-C-cEEEEeecCCc----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307 95 G-D-SLRLWEIHDDR----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE 168 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 168 (339)
+ | ...||++.+.+ ....+.+.+|+ +.+.++.|- +...|++++.|.++.+||+++++.+..+.+|.+.
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-----gylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD 188 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHT-----GYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGD 188 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCcc-----ceeEEEEEc--CCCceEecCCCceEEEEEcccceEEEEecCCccc
Confidence 8 6 88999998552 33556788888 899999997 5678999999999999999999999999999999
Q ss_pred eeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 169 VYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 169 v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
|.+++++ +++.|++|+-|+..++||+|.+..... +.. |+..|++++|.| +|.-+++|+.|+. .++||+|. .+
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt-F~g--hesDINsv~ffP-~G~afatGSDD~t-cRlyDlRa-D~ 262 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT-FEG--HESDINSVRFFP-SGDAFATGSDDAT-CRLYDLRA-DQ 262 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEe-ecc--cccccceEEEcc-CCCeeeecCCCce-eEEEeecC-Cc
Confidence 9999999 589999999999999999999974444 444 789999999999 9999999999999 99999998 44
Q ss_pred ceEEEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307 247 PVVVLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324 (339)
Q Consensus 247 ~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 324 (339)
.+..+.. -..+|++++||..| ++|++|..|.++.+||.-..+ ..-.+.+|...|+++..+|||.-
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e------------~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE------------RVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred EEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc------------eEEEeeccCCeeEEEEECCCCcE
Confidence 4555542 23589999999999 699999999999999998877 23367799999999999999988
Q ss_pred eEEEecCCeEEEEe
Q 040307 325 WIAIAFVNKLQLLK 338 (339)
Q Consensus 325 l~~~~~d~~v~~w~ 338 (339)
+.+++.|..+|||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 88999999999994
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.7e-44 Score=280.53 Aligned_cols=279 Identities=20% Similarity=0.326 Sum_probs=241.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
...+|..+.|.|+ |+.|++|+ ..|.+.+|+... -.++. . ...|..+|.++.|++++ ..+++|.
T Consensus 95 vkc~V~~v~WtPe---GRRLltgs----~SGEFtLWNg~~--fnFEt--i-lQaHDs~Vr~m~ws~~g-----~wmiSgD 157 (464)
T KOG0284|consen 95 VKCPVNVVRWTPE---GRRLLTGS----QSGEFTLWNGTS--FNFET--I-LQAHDSPVRTMKWSHNG-----TWMISGD 157 (464)
T ss_pred cccceeeEEEcCC---CceeEeec----ccccEEEecCce--eeHHH--H-hhhhcccceeEEEccCC-----CEEEEcC
Confidence 3568999999999 99999999 899999976532 22221 2 27899999999999999 8999998
Q ss_pred C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
+ .|++|+.+-.. +..+..|. ...|++++|+| +...|++++.||+|+|||....+....+.+|.-.|.+++
T Consensus 158 ~gG~iKyWqpnmnn---Vk~~~ahh----~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNN---VKIIQAHH----AEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred CCceEEecccchhh---hHHhhHhh----hhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 4 99999987663 44444432 17899999999 889999999999999999999988889999999999999
Q ss_pred ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
|+ ...++++++.|..|++||.+++++...+. .|+..|..+.|+| ++++|++++.|.. +++||++. -+.+..++
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh---~HKntVl~~~f~~-n~N~Llt~skD~~-~kv~DiR~-mkEl~~~r 303 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLH---GHKNTVLAVKFNP-NGNWLLTGSKDQS-CKVFDIRT-MKELFTYR 303 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCcchhhhhh---hccceEEEEEEcC-CCCeeEEccCCce-EEEEehhH-hHHHHHhh
Confidence 99 57799999999999999999998665543 3788999999998 7899999999999 99999996 55688899
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce--eeecccceeEEEEecCCCCceEEEec
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
+|+..|++++|+|-.+.+|.+|+.||.|..|.+...+ |+ ...+|...|++++|+|-|..|++++.
T Consensus 304 ~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-------------p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 304 GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-------------PLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred cchhhheeeccccccccceeeccCCCceEEEeccccc-------------cccCCCcccccceeeeeccccceeEeecCC
Confidence 9999999999999888899999999999999998655 33 45579999999999999987778899
Q ss_pred CCeEEEEe
Q 040307 331 VNKLQLLK 338 (339)
Q Consensus 331 d~~v~~w~ 338 (339)
|+++++|.
T Consensus 371 d~t~rfw~ 378 (464)
T KOG0284|consen 371 DRTVRFWT 378 (464)
T ss_pred Ccceeeec
Confidence 99999994
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-43 Score=277.98 Aligned_cols=247 Identities=21% Similarity=0.330 Sum_probs=221.6
Q ss_pred ceeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 9 PGVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 9 ~~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
..++++ .|...|.++.|+|..+ +..||+|+ .||++++|+++.+...... .+|...|..++|+|+|
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~-~~~lat~s----~Dgtvklw~~~~e~~l~~l-----~gH~~RVs~VafHPsG---- 273 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDS-DLNLATAS----ADGTVKLWKLSQETPLQDL-----EGHLARVSRVAFHPSG---- 273 (459)
T ss_pred ceeEEEeccccceeeEEEccCCC-ccceeeec----cCCceeeeccCCCcchhhh-----hcchhhheeeeecCCC----
Confidence 344444 5889999999999832 56899999 7999999888766443332 6899999999999999
Q ss_pred CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307 88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 165 (339)
++|++++ | +-++||+.++. .+...++|. ..|.+++|+| +|.++++|+.|..-+|||+++++++..+.+|
T Consensus 274 -~~L~TasfD~tWRlWD~~tk~--ElL~QEGHs-----~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH 344 (459)
T KOG0272|consen 274 -KFLGTASFDSTWRLWDLETKS--ELLLQEGHS-----KGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGH 344 (459)
T ss_pred -ceeeecccccchhhcccccch--hhHhhcccc-----cccceeEecC-CCceeeccCccchhheeecccCcEEEEeccc
Confidence 9999998 7 99999999987 556667777 9999999998 9999999999999999999999999999999
Q ss_pred CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
..+|.+|+|+ +|..|+||+.|++++|||+|..+. ++..+.|..-|+.+.|+|..|.+|++++.|++ ++||..+.
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~- 419 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRT- 419 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCC-
Confidence 9999999999 799999999999999999999875 44556689999999999989999999999999 99999887
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
..+++++.+|.+.|.++..+|++ ..+++++.|.++++|.
T Consensus 420 ~~~~ksLaGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 WSPLKSLAGHEGKVISLDISPDS-QAIATSSFDRTIKLWR 458 (459)
T ss_pred cccchhhcCCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence 78999999999999999999999 6999999999999995
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-40 Score=249.98 Aligned_cols=293 Identities=16% Similarity=0.214 Sum_probs=234.6
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|++.|..++..+. +.+.+..++ .|..+.+|++..+..++-.......+|...|..+..++++ .+..++
T Consensus 13 gh~d~Vt~la~~~~--~~~~l~sas----rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-----~~alS~ 81 (315)
T KOG0279|consen 13 GHTDWVTALAIKIK--NSDILVSAS----RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-----NFALSA 81 (315)
T ss_pred CCCceEEEEEeecC--CCceEEEcc----cceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-----ceEEec
Confidence 37899999999998 467888888 7999999999877655432222336899999999999999 788888
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc--CCcee
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH--DREVY 170 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~v~ 170 (339)
+ | ++++||+.+++ ..+.|.+|. ..|.+++|+| ++..|++|+.|.+|++|+.... +..++..+ .+.|.
T Consensus 82 swD~~lrlWDl~~g~--~t~~f~GH~-----~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGE--STRRFVGHT-----KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVS 152 (315)
T ss_pred cccceEEEEEecCCc--EEEEEEecC-----CceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEE
Confidence 7 6 99999999997 889999999 9999999998 9999999999999999998654 44555433 78999
Q ss_pred EEEecC---CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307 171 DISWGG---FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247 (339)
Q Consensus 171 ~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~ 247 (339)
|+.|+| .-+|++++.|++|++||+++.+....+ . +|.+.++.++++| +|.+.++|+.|+. +.+||++. ++.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-~--gh~~~v~t~~vSp-DGslcasGgkdg~-~~LwdL~~-~k~ 226 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-I--GHSGYVNTVTVSP-DGSLCASGGKDGE-AMLWDLNE-GKN 226 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-c--cccccEEEEEECC-CCCEEecCCCCce-EEEEEccC-Cce
Confidence 999994 569999999999999999998744443 3 3788999999999 9999999999998 99999998 555
Q ss_pred eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307 248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA 327 (339)
Q Consensus 248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~ 327 (339)
++.+. |...|.+++|+|+. ..|+.+. +..|+|||+..... -.+..+. ..-+ ........-.+++|+++|+.|++
T Consensus 227 lysl~-a~~~v~sl~fspnr-ywL~~at-~~sIkIwdl~~~~~-v~~l~~d-~~g~-s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 227 LYSLE-AFDIVNSLCFSPNR-YWLCAAT-ATSIKIWDLESKAV-VEELKLD-GIGP-SSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred eEecc-CCCeEeeEEecCCc-eeEeecc-CCceEEEeccchhh-hhhcccc-cccc-ccccCCcEEEEEEEcCCCcEEEe
Confidence 66665 58899999999996 4555554 55799999998771 0000000 0000 11112334678999999999999
Q ss_pred EecCCeEEEEeC
Q 040307 328 IAFVNKLQLLKV 339 (339)
Q Consensus 328 ~~~d~~v~~w~v 339 (339)
+-.|+.|++|.|
T Consensus 301 g~td~~irv~qv 312 (315)
T KOG0279|consen 301 GYTDNVIRVWQV 312 (315)
T ss_pred eecCCcEEEEEe
Confidence 999999999985
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.3e-40 Score=246.53 Aligned_cols=290 Identities=16% Similarity=0.251 Sum_probs=237.2
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.+++..++|+|. .|.+||+++ .|..|+||+... ...+.....+.-+|...|.+++|+|.+ ++||++
T Consensus 12 gh~~r~W~~awhp~--~g~ilAscg----~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g-----~~La~a 79 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPG--KGVILASCG----TDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHG-----RYLASA 79 (312)
T ss_pred CCCCcEEEEEeccC--CceEEEeec----CCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCC-----cEEEEe
Confidence 36789999999998 367899999 799999988774 344555445556899999999999999 999999
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC---eeeeeeeccCCce
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE---ILETQLVAHDREV 169 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~~v 169 (339)
+ | ++.||.-..++++++.++++|. ..|.+++|++ +|++||+++.|..|-||.+..+ ++...++.|...|
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHE-----nEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHE-----NEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred eccceEEEeecCCCceeEEeeeeccc-----cceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 9 7 9999999999999999999999 8999999997 9999999999999999998744 4778889999999
Q ss_pred eEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 170 YDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 170 ~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
..+.|+| ..+|++++.|.+|++|+-.....-........|...|.+++|+| .|..|++++.|++ ++||-... .
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~t-v~Iw~~~~-~--- 227 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGT-VSIWRLYT-D--- 227 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcc-eEeeeecc-C---
Confidence 9999994 78999999999999998774332222333334677999999998 8999999999999 99998653 1
Q ss_pred EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce--eeecccceeEEEEecCC-CCce
Q 040307 249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSMAEINVVRWSPL-ELDW 325 (339)
Q Consensus 249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~-~~~l 325 (339)
.-..|...++.+.|. ++ .|++++.|+.|++|.-......| ..+.+ ....|...|++++|.|. ...|
T Consensus 228 -~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p-------~~~l~~~~~~aHe~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 228 -LSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEP-------SWNLLAKKEGAHEVDVNSVQWNPKVSNRL 296 (312)
T ss_pred -cchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCc-------hHHHHHhhhcccccccceEEEcCCCCCce
Confidence 112367899999999 54 89999999999999877532011 01111 23357889999999995 4457
Q ss_pred EEEecCCeEEEEeC
Q 040307 326 IAIAFVNKLQLLKV 339 (339)
Q Consensus 326 ~~~~~d~~v~~w~v 339 (339)
++++.||.+++|.+
T Consensus 297 ~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 297 ASGGDDGIVNFWEL 310 (312)
T ss_pred eecCCCceEEEEEe
Confidence 78899999999975
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-41 Score=268.76 Aligned_cols=287 Identities=20% Similarity=0.314 Sum_probs=246.8
Q ss_pred eeeccCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccce----eeE-----eecCCCCceEEEEcCC
Q 040307 13 TYMAQWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSAD----NRL-----IFDHPYTPTNIAFFPS 82 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~----~~~-----~~~~~~~v~~l~~~~~ 82 (339)
-..|+.+|.+.+|+|- .. .||+|+ .+-..++|++.......... +.+ ....+..|++|+|+.+
T Consensus 174 vl~~~~~V~~~~WnP~---~~~llasg~----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~ 246 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPL---RDGLLASGS----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND 246 (524)
T ss_pred eccCCCceEEEecCch---hhhhhhccC----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence 3448889999999998 66 899999 79999999887522221110 011 1233567999999999
Q ss_pred CCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 040307 83 EETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET 160 (339)
Q Consensus 83 ~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 160 (339)
| .+||+|. + .++||+.... +..++..|+ ++|.++.|+. .+.+|++++.|+++.+||..+++..+
T Consensus 247 G-----~~LatG~~~G~~riw~~~G~---l~~tl~~Hk-----gPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 247 G-----TLLATGSEDGEARIWNKDGN---LISTLGQHK-----GPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred C-----CeEEEeecCcEEEEEecCch---hhhhhhccC-----CceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEE
Confidence 9 8999998 4 9999998776 677888898 9999999996 99999999999999999999999999
Q ss_pred eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 161 QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 161 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
.+..|..+-.++.|-+...|++++.|+.|+++.+....+... +.+ |.++|.++.|+| .+.+|++++.|++ ++||.
T Consensus 313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t-~~G--H~g~V~alk~n~-tg~LLaS~SdD~T-lkiWs 387 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKT-FIG--HHGEVNALKWNP-TGSLLASCSDDGT-LKIWS 387 (524)
T ss_pred eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCccee-eec--ccCceEEEEECC-CCceEEEecCCCe-eEeee
Confidence 998898887889999888999999999999999988774444 444 779999999998 9999999999999 99999
Q ss_pred cCCCCCceEEEecCCCCeeEEEeccCCC--------CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccc
Q 040307 241 IRFPTNPVVVLSKHEGSVNGISWAPLYG--------RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMA 311 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 311 (339)
+.. ......+.+|...|+.+.|+|+++ ..+++++.|++|++||+..+. |+ .+..|+.
T Consensus 388 ~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-------------~i~~f~kH~~ 453 (524)
T KOG0273|consen 388 MGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-------------PIHTLMKHQE 453 (524)
T ss_pred cCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-------------eeEeeccCCC
Confidence 877 667889999999999999999863 479999999999999999988 55 5569999
Q ss_pred eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 312 EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|++++|+|+|+++++++.||.|.+|.+
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 9999999999999999999999999974
No 12
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-41 Score=249.48 Aligned_cols=291 Identities=23% Similarity=0.324 Sum_probs=239.0
Q ss_pred CCeeEEEeeecCCcccEEEEee--e-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 18 WPISTVAWSVRHDRKSRLAVGS--F-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~--~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
..=+++.|||-.+ ++||+++ . .=...|++.|.+.+...+... ...+.-++.+..++|+++.++ .++++.
T Consensus 9 f~GysvqfSPf~~--nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e---~~s~d~~D~LfdV~Wse~~e~---~~~~a~ 80 (311)
T KOG0277|consen 9 FHGYSVQFSPFVE--NRLAVATAQHYGLAGNGRLFILEVTDPKGIQE---CQSYDTEDGLFDVAWSENHEN---QVIAAS 80 (311)
T ss_pred cccceeEeccccc--chhheeehhhcccccCceEEEEecCCCCCeEE---EEeeecccceeEeeecCCCcc---eEEEEe
Confidence 3457899999743 3444443 2 112378899966642222222 123577889999999999863 344445
Q ss_pred CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 95 GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 95 ~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
|| +++|||+.... .++..++.|+ ..|.++.|++.+...+++++.|++|++|+...++.++++.+|...|...+
T Consensus 81 GDGSLrl~d~~~~s-~Pi~~~kEH~-----~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 81 GDGSLRLFDLTMPS-KPIHKFKEHK-----REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred cCceEEEeccCCCC-cchhHHHhhh-----hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 56 99999965443 5888889988 99999999998888999999999999999999999999999999999999
Q ss_pred ec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 174 WG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 174 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
|+ .++++++++.|+.+++||++...+... .+. |...+.++.|+..+.+.+++|+.|+. |+.||+++...|+..+
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a--h~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA--HNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFEL 230 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe--ccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceee
Confidence 99 489999999999999999998875554 333 67899999999989999999999999 9999999999999999
Q ss_pred ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceE-EEe
Q 040307 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI-AIA 329 (339)
Q Consensus 252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~-~~~ 329 (339)
.+|.-.|+.+.|||....+|++++.|-+++|||..... ..+ ....|.+-+..+.|++..+..+ .++
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD------------SAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccch------------hhhhhhhccceEEeccccccccCceeeecc
Confidence 99999999999999987899999999999999999766 122 3346888899999999866655 578
Q ss_pred cCCeEEEEe
Q 040307 330 FVNKLQLLK 338 (339)
Q Consensus 330 ~d~~v~~w~ 338 (339)
.|+.+.||+
T Consensus 299 WDe~l~Vw~ 307 (311)
T KOG0277|consen 299 WDELLYVWN 307 (311)
T ss_pred cccceeeec
Confidence 999999996
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-39 Score=261.83 Aligned_cols=277 Identities=19% Similarity=0.317 Sum_probs=241.1
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG- 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~- 95 (339)
...|++++|+.+ |..||+|. .+|.++||+ ..+..... + ..|.++|.+|.|+..+ .+|++++
T Consensus 235 nkdVT~L~Wn~~---G~~LatG~----~~G~~riw~--~~G~l~~t---l-~~HkgPI~slKWnk~G-----~yilS~~v 296 (524)
T KOG0273|consen 235 NKDVTSLDWNND---GTLLATGS----EDGEARIWN--KDGNLIST---L-GQHKGPIFSLKWNKKG-----TYILSGGV 296 (524)
T ss_pred cCCcceEEecCC---CCeEEEee----cCcEEEEEe--cCchhhhh---h-hccCCceEEEEEcCCC-----CEEEeccC
Confidence 468999999999 99999999 799999955 44444432 2 5799999999999999 8999988
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
| ++.+||..+++ ....+.-|. .+..++.|- +...|++++.|+.|+|+.+...+++.++.+|.++|.++.|
T Consensus 297 D~ttilwd~~~g~--~~q~f~~~s-----~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 297 DGTTILWDAHTGT--VKQQFEFHS-----APALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred CccEEEEeccCce--EEEeeeecc-----CCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 6 99999999987 667777776 666789996 6788999999999999999999999999999999999999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC--------CCCeEEEEeeCCCeEEEEecCCCC
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA--------DPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
+ .+.+|++++.|++++||..........+. .|...|..+.|+|. .+..+++++.|+. |++||+.. +
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~-g 442 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVES-G 442 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccC-C
Confidence 9 59999999999999999987766443332 36778999999873 3568999999999 99999998 7
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW 325 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 325 (339)
.++..+..|..+|++++|+|++ +++|+|+.||.|.+|+.+..+ ....+...+.|..++|+..|..+
T Consensus 443 v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~-------------l~~s~~~~~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 443 VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK-------------LVKSYQGTGGIFELCWNAAGDKL 508 (524)
T ss_pred ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh-------------eeEeecCCCeEEEEEEcCCCCEE
Confidence 8899999999999999999999 699999999999999999988 66777778889999999999877
Q ss_pred EEEecCCeEEEEeC
Q 040307 326 IAIAFVNKLQLLKV 339 (339)
Q Consensus 326 ~~~~~d~~v~~w~v 339 (339)
.++..|+.+.+.++
T Consensus 509 ~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 509 GACASDGSVCVLDL 522 (524)
T ss_pred EEEecCCCceEEEe
Confidence 78889999988764
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-40 Score=257.42 Aligned_cols=282 Identities=16% Similarity=0.232 Sum_probs=248.9
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.+..+|+.+-|+|+ -.++++++ .|.+|++||+. ++++.. .+ .+|.+.|..++|+..| ++||++
T Consensus 106 g~r~~vt~v~~hp~---~~~v~~as----~d~tikv~D~~--tg~~e~--~L-rGHt~sv~di~~~a~G-----k~l~tc 168 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPS---EALVVSAS----EDATIKVFDTE--TGELER--SL-RGHTDSVFDISFDASG-----KYLATC 168 (406)
T ss_pred ccccceeeeeeccC---ceEEEEec----CCceEEEEEcc--chhhhh--hh-hccccceeEEEEecCc-----cEEEec
Confidence 36689999999999 88999998 89999996655 444433 33 7999999999999999 899999
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ | .+.+||.++. .+++..+.+|+ ..|.++.|-| .+.+|++++.|.+|+.|++.++.++.++.+|...|..+
T Consensus 169 SsDl~~~LWd~~~~-~~c~ks~~gh~-----h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTF-FRCIKSLIGHE-----HGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred CCccchhheeHHHH-HHHHHHhcCcc-----cceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence 8 5 7999999875 45778888888 8999999999 88999999999999999999999999999999999999
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC--------------CCCeEEEEeeCCCeEE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA--------------DPRFMATVGMDSNKVV 237 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------------~~~~l~~~~~d~~~i~ 237 (339)
+.+ ++.++++++.|.++++|-+.+.+....+. .|+.++.+++|.|. .+.++.+++.|+. |+
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik 317 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IK 317 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EE
Confidence 999 99999999999999999999886444432 26778999999772 2369999999999 99
Q ss_pred EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEE
Q 040307 238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVR 317 (339)
Q Consensus 238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 317 (339)
+||+.. +.++.++.+|...|..++|+|.| ++|+++.+|+++++||+++.. .......|..-+++++
T Consensus 318 ~wdv~t-g~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~------------cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 318 IWDVST-GMCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ------------CMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEeccC-CeEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce------------eeeccCCCcceeEEEe
Confidence 999998 78899999999999999999999 799999999999999999988 2234557899999999
Q ss_pred ecCCCCceEEEecCCeEEEEe
Q 040307 318 WSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 318 ~~p~~~~l~~~~~d~~v~~w~ 338 (339)
|+.+.+++++|+-|.++++|.
T Consensus 384 fh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cCCCCceEEeccccceeeeee
Confidence 999999999999999999996
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-39 Score=242.43 Aligned_cols=243 Identities=17% Similarity=0.273 Sum_probs=216.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.+|++.|+.++..+.+. +++.+++ | .+.+|++.... ..+.+.+.+|. ..|..+..++ ++++.+++
T Consensus 12 ~gh~d~Vt~la~~~~~~----~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~-dg~~alS~ 81 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNS----DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSS-DGNFALSA 81 (315)
T ss_pred cCCCceEEEEEeecCCC----ceEEEcccceEEEEEEeccCccccCceeeeeeccc-----eEecceEEcc-CCceEEec
Confidence 68999999999999864 8888888 5 99999997754 23578888988 8999999998 99999999
Q ss_pred eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307 143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
+.|+.+++||+.+++..+.|.+|...|.+++|+ ++..+++|+.|.+|++|++............ +...|.++.|+|.
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~--~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS--HREWVSCVRFSPN 159 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC--CcCcEEEEEEcCC
Confidence 999999999999999999999999999999999 8999999999999999999887644443332 3689999999995
Q ss_pred C-CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307 222 D-PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 222 ~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
. .-+|++++.|+. +++||+++ .+....+.+|.+.++.+++|||| .++++|+.||.+.+||+...+
T Consensus 160 ~~~p~Ivs~s~Dkt-vKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k----------- 225 (315)
T KOG0279|consen 160 ESNPIIVSASWDKT-VKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK----------- 225 (315)
T ss_pred CCCcEEEEccCCce-EEEEccCC-cchhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc-----------
Confidence 4 678999999999 99999998 67788999999999999999999 599999999999999999988
Q ss_pred ccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+...+|...|.+++|+|+. +.+++..+..|+||++
T Consensus 226 --~lysl~a~~~v~sl~fspnr-ywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 226 --NLYSLEAFDIVNSLCFSPNR-YWLCAATATSIKIWDL 261 (315)
T ss_pred --eeEeccCCCeEeeEEecCCc-eeEeeccCCceEEEec
Confidence 56777899999999999997 6778888888999985
No 16
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-39 Score=258.15 Aligned_cols=319 Identities=22% Similarity=0.339 Sum_probs=249.1
Q ss_pred eeeeeeccCCeeEEEeeecCCcc-------cEEEEeeeccc-cCCeEEEEecCCC--------------CCcc-------
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRK-------SRLAVGSFLED-YSNKIELVNFNPE--------------TSDF------- 60 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~-------~~la~g~~~~~-~~~~i~i~~~~~~--------------~~~~------- 60 (339)
.+.++...+|-.++.|-|+.... +.|+.|+...+ ..+.+.|=+++.. .+++
T Consensus 33 lv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~ 112 (422)
T KOG0264|consen 33 LVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVS 112 (422)
T ss_pred HhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccccccCCccccc
Confidence 45566778999999999973212 46777776433 6677777543311 1110
Q ss_pred -cceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc--------ceeEEEeecCCCccCCCCEEEE
Q 040307 61 -SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR--------TELKSLLNSNKTSEFSSAITSF 129 (339)
Q Consensus 61 -~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~ 129 (339)
.......+.|.+.|+.+.+.|+.. .++|+.+. .+.|||..... ..+-..+.+|+ ..-+++
T Consensus 113 ~~v~i~~~i~h~gEVnRaRymPQnp----~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~-----~eg~gl 183 (422)
T KOG0264|consen 113 GKVEISQKINHDGEVNRARYMPQNP----NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE-----KEGYGL 183 (422)
T ss_pred cceEEEEeccCCccchhhhhCCCCC----cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----cccccc
Confidence 111123457999999999999984 78887764 99999987643 22334788888 445679
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCe-------eeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcce
Q 040307 130 DWAGFDTRRVATCSVDTTCVIWDIDREI-------LETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERS 200 (339)
Q Consensus 130 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~-------~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 200 (339)
+|++.....+++++.|+.|++||+.... +...+.+|...|..++|+ ..++|++++.|+.+.|||+|+. ..
T Consensus 184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~ 262 (422)
T KOG0264|consen 184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TS 262 (422)
T ss_pred ccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CC
Confidence 9999888899999999999999996532 455678999999999999 6889999999999999999973 22
Q ss_pred eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcE
Q 040307 201 TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRA 280 (339)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 280 (339)
........|..++.+++|+|.++.+||+|+.|++ |++||+|+..+++.++.+|...|.+|.|+|+.+.+||+++.|+.+
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE
Confidence 2222333488999999999999999999999999 999999999999999999999999999999988999999999999
Q ss_pred EEEEecCCCC-CCCCCCCCCcccce-eeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307 281 LIWEVVGPGY-RSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV 339 (339)
Q Consensus 281 ~iwd~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v 339 (339)
.|||+..-.. ++.+....+..+++ ..-+|...|..+.|+|..+.++ +++.|+.++||++
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 9999988653 22233333333333 3347899999999999999876 5789999999985
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.7e-40 Score=278.75 Aligned_cols=276 Identities=17% Similarity=0.245 Sum_probs=231.7
Q ss_pred ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
-.++++. ....+.|..|+++ +..||+|. .|..|++|.+.....+.. .+. ++-+.-
T Consensus 369 ic~YT~~nt~~~v~ca~fSdd---ssmlA~Gf----~dS~i~~~Sl~p~kl~~l-------k~~------~~l~~~---- 424 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDD---SSMLACGF----VDSSVRVWSLTPKKLKKL-------KDA------SDLSNI---- 424 (707)
T ss_pred EEEEEEEEcCCcceeEeecCC---cchhhccc----cccEEEEEecchhhhccc-------cch------hhhccc----
Confidence 3455554 3578999999999 99999999 899999988776532221 111 121111
Q ss_pred CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307 88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 165 (339)
-+.+ | .+.+.|.+... ...++-+|. ++|....|+| +.++|+++++|++|++|.+.+..++..+++|
T Consensus 425 ----d~~sad~~~~~~D~~~~~--~~~~L~GH~-----GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH 492 (707)
T KOG0263|consen 425 ----DTESADVDVDMLDDDSSG--TSRTLYGHS-----GPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH 492 (707)
T ss_pred ----cccccchhhhhccccCCc--eeEEeecCC-----Cceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCC
Confidence 1122 2 45555555554 666788998 9999999999 9999999999999999999999999999999
Q ss_pred CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
..+|+++.|+ .|-+||+++.|++.++|...... +..++.+ |...|.|+.|+| +..|+++|+.|.+ +++||+.+
T Consensus 493 ~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifag--hlsDV~cv~FHP-Ns~Y~aTGSsD~t-VRlWDv~~- 566 (707)
T KOG0263|consen 493 LAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAG--HLSDVDCVSFHP-NSNYVATGSSDRT-VRLWDVST- 566 (707)
T ss_pred CcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcc--cccccceEEECC-cccccccCCCCce-EEEEEcCC-
Confidence 9999999999 59999999999999999998866 4444555 778999999999 9999999999999 99999998
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 324 (339)
+..++.+.+|.++|.+++|||+| ++|++|+.||.|++||+..+. ......+|.+.|+++.|+.+|..
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~------------~v~~l~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS------------LVKQLKGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc------------chhhhhcccCceeEEEEecCCCE
Confidence 66799999999999999999999 799999999999999999988 23366789999999999999998
Q ss_pred eEEEecCCeEEEEeC
Q 040307 325 WIAIAFVNKLQLLKV 339 (339)
Q Consensus 325 l~~~~~d~~v~~w~v 339 (339)
|++++.|++|++|++
T Consensus 634 Lasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 634 LASGGADNSVRLWDL 648 (707)
T ss_pred EEecCCCCeEEEEEc
Confidence 889999999999985
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.3e-39 Score=242.88 Aligned_cols=242 Identities=20% Similarity=0.315 Sum_probs=215.1
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC--CCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE--TSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
..|..++|+|. ++++|+|+ -|+...||++... .+.......+ .+|.+.+.|..|.+|+ .+|-+++
T Consensus 98 ~WVMtCA~sPS---g~~VAcGG----LdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC~f~dD~-----~ilT~SG 164 (343)
T KOG0286|consen 98 SWVMTCAYSPS---GNFVACGG----LDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLDDN-----HILTGSG 164 (343)
T ss_pred eeEEEEEECCC---CCeEEecC----cCceeEEEecccccccccceeeeee-cCccceeEEEEEcCCC-----ceEecCC
Confidence 57899999999 99999999 6999999998854 2222222233 7999999999999987 6665566
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
| +..+||+++++ ....|.+|. +.|.+++++|.+++.+++|+.|+..++||++.+.+++.+.+|...|++++|
T Consensus 165 D~TCalWDie~g~--~~~~f~GH~-----gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 165 DMTCALWDIETGQ--QTQVFHGHT-----GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF 237 (343)
T ss_pred CceEEEEEcccce--EEEEecCCc-----ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence 7 99999999998 889999999 999999999889999999999999999999999999999999999999999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK 253 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~ 253 (339)
. ++.-|++|+.|+++++||+|..+.... +.......+|++++|+. .|++|++|..|.+ +.+||.-+ ++.+..+.+
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD~~~a~-ys~~~~~~gitSv~FS~-SGRlLfagy~d~~-c~vWDtlk-~e~vg~L~G 313 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRADQELAV-YSHDSIICGITSVAFSK-SGRLLFAGYDDFT-CNVWDTLK-GERVGVLAG 313 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCCcEEee-eccCcccCCceeEEEcc-cccEEEeeecCCc-eeEeeccc-cceEEEeec
Confidence 9 699999999999999999999885554 44445668899999996 9999999999999 99999876 667889999
Q ss_pred CCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 254 HEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
|...|.++..+||| .-+++|+.|..++||.
T Consensus 314 HeNRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 314 HENRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence 99999999999999 7999999999999994
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.7e-39 Score=243.29 Aligned_cols=285 Identities=18% Similarity=0.203 Sum_probs=239.9
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
.+....|++.|+.+.|+|+ |.+||+|+ .|..|.+|+...+.+.+-. ..+|.++|..+.|.+++ .
T Consensus 40 ~m~l~gh~geI~~~~F~P~---gs~~aSgG----~Dr~I~LWnv~gdceN~~~----lkgHsgAVM~l~~~~d~-----s 103 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPD---GSCFASGG----SDRAIVLWNVYGDCENFWV----LKGHSGAVMELHGMRDG-----S 103 (338)
T ss_pred hhhcCCCcceEEEEEECCC---CCeEeecC----CcceEEEEeccccccceee----eccccceeEeeeeccCC-----C
Confidence 4455568899999999999 99999999 7999999986655544443 36999999999999999 6
Q ss_pred eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC
Q 040307 90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 167 (339)
.+++++ | +++.||+++++ ....+++|. .-|+.+.-+.....++.+++.|+++++||+++.+.++++. ...
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~-----~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGK--RIRKHKGHT-----SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred EEEEecCCceEEEEecccce--eeehhcccc-----ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence 676666 6 99999999998 888888888 7888887554456788899999999999999988888874 567
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT- 245 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~- 245 (339)
+++++.|. .+..+.+|+-|+.|++||+|.+..... .. +|...|+.+..+| +|.++.+-+.|.. +++||++...
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-ls--Gh~DtIt~lsls~-~gs~llsnsMd~t-vrvwd~rp~~p 250 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-LS--GHADTITGLSLSR-YGSFLLSNSMDNT-VRVWDVRPFAP 250 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEE-ee--cccCceeeEEecc-CCCccccccccce-EEEEEecccCC
Confidence 89999999 788999999999999999999874443 33 3789999999998 9999999999999 9999998522
Q ss_pred --CceEEEecCCC----CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307 246 --NPVVVLSKHEG----SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS 319 (339)
Q Consensus 246 --~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 319 (339)
.++..+.+|.. ....++|+|++ ..+.+|+.|..+++||..... -.....+|.+.|++++|+
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~------------~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR------------ILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc------------EEEEcCCcceeEEEeeec
Confidence 23556666543 45678999999 699999999999999999876 233666899999999999
Q ss_pred CCCCceEEEecCCeEEE
Q 040307 320 PLELDWIAIAFVNKLQL 336 (339)
Q Consensus 320 p~~~~l~~~~~d~~v~~ 336 (339)
|..+.+++++.|++|.+
T Consensus 318 p~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 318 PTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCcEEEEeccCceeEe
Confidence 99998889999999876
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-38 Score=266.12 Aligned_cols=280 Identities=18% Similarity=0.251 Sum_probs=244.0
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD- 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~- 96 (339)
..|++.+|+|. ...||+|- ..|...+|.+..-. +.. .+ .-...+|..++|+..| +.||.|+.
T Consensus 266 ~kvtaa~fH~~---t~~lvvgF----ssG~f~LyelP~f~--lih--~L-Sis~~~I~t~~~N~tG-----DWiA~g~~k 328 (893)
T KOG0291|consen 266 SKVTAAAFHKG---TNLLVVGF----SSGEFGLYELPDFN--LIH--SL-SISDQKILTVSFNSTG-----DWIAFGCSK 328 (893)
T ss_pred cceeeeeccCC---ceEEEEEe----cCCeeEEEecCCce--EEE--Ee-ecccceeeEEEecccC-----CEEEEcCCc
Confidence 68999999999 99999998 79999997765432 222 22 2235689999999999 89999884
Q ss_pred --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
.+.||+..... -+...++|. ..+++++++| ||+++|+|++||+|+|||..++-+..++..|++.|+.++|
T Consensus 329 lgQLlVweWqsEs--YVlKQQgH~-----~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 329 LGQLLVWEWQSES--YVLKQQGHS-----DRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred cceEEEEEeeccc--eeeeccccc-----cceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence 89999998876 556667777 8999999999 9999999999999999999999999999999999999999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK 253 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~ 253 (339)
+ .++.+++.+.||+|+.||+...+.-..+..+ ...+..+++..| .|.++.+|+.|...|.+|++++ ++.+..+.+
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qT-GqllDiLsG 476 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--EPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQT-GQLLDILSG 476 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecccceeeeecCC--CceeeeEEEEcC-CCCEEEeeccceEEEEEEEeec-CeeeehhcC
Confidence 9 8999999999999999999988765554444 346778999998 8999999999988899999998 788999999
Q ss_pred CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCe
Q 040307 254 HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNK 333 (339)
Q Consensus 254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~ 333 (339)
|.++|.+++|+|++ ..|+++|.|.+|++||+-... .......+...+..++|+|+|+.++.+..||.
T Consensus 477 HEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~------------~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSS------------GTVETLEIRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred CCCcceeeEEcccc-CeEEeccccceEEEEEeeccC------------ceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence 99999999999999 599999999999999998765 12344566778999999999999999999999
Q ss_pred EEEEeC
Q 040307 334 LQLLKV 339 (339)
Q Consensus 334 v~~w~v 339 (339)
|.+|++
T Consensus 544 Itf~d~ 549 (893)
T KOG0291|consen 544 ITFFDI 549 (893)
T ss_pred EEEEEh
Confidence 999984
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-37 Score=288.06 Aligned_cols=297 Identities=12% Similarity=0.179 Sum_probs=234.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC--CcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET--SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
|...|.+++|+|+ +++||+|+ .|+.|+||+..... ......+.....+...|.+++|++... .+||+
T Consensus 482 ~~~~V~~i~fs~d---g~~latgg----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~las 550 (793)
T PLN00181 482 SSNLVCAIGFDRD---GEFFATAG----VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK----SQVAS 550 (793)
T ss_pred CCCcEEEEEECCC---CCEEEEEe----CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC----CEEEE
Confidence 6778999999999 99999999 79999999875321 111111122244567899999998643 68888
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
++ | +|++||+.+++ .+..+.+|. ..|++++|+|.++.+|++|+.|+.|++||++++..+..+..+ ..+.+
T Consensus 551 ~~~Dg~v~lWd~~~~~--~~~~~~~H~-----~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 551 SNFEGVVQVWDVARSQ--LVTEMKEHE-----KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EeCCCeEEEEECCCCe--EEEEecCCC-----CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 87 5 99999999876 777888888 899999999767899999999999999999999888888644 67999
Q ss_pred EEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC-----
Q 040307 172 ISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP----- 244 (339)
Q Consensus 172 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~----- 244 (339)
+.|+ ++.+|++|+.|+.|++||++.......... .|...|.++.|. ++.+|++++.|+. |++||++..
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~--~h~~~V~~v~f~--~~~~lvs~s~D~~-ikiWd~~~~~~~~~ 697 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI--GHSKTVSYVRFV--DSSTLVSSSTDNT-LKLWDLSMSISGIN 697 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec--CCCCCEEEEEEe--CCCEEEEEECCCE-EEEEeCCCCccccC
Confidence 9996 589999999999999999998764333333 377899999996 6789999999999 999999752
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc---eeeecccceeEEEEecCC
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP---ELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~p~ 321 (339)
..++..+.+|...+..++|+|++ .+|++|+.|+.|++|+...... ..........+ .....+...|.+++|+|+
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMP--VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCc--eEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 35678899999999999999998 6999999999999999765430 00000000001 112235567999999999
Q ss_pred CCceEEEecCCeEEEEeC
Q 040307 322 ELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 322 ~~~l~~~~~d~~v~~w~v 339 (339)
+..+++++.||.|++|++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999985
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7e-38 Score=271.73 Aligned_cols=283 Identities=19% Similarity=0.285 Sum_probs=239.0
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG- 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~- 95 (339)
...|.++.|+|+ |+.|++++ .++.+++|+.......... .+ .+|...|.+++|+|++ +++++++
T Consensus 159 ~~sv~~~~fs~~---g~~l~~~~----~~~~i~~~~~~~~~~~~~~--~l-~~h~~~v~~~~fs~d~-----~~l~s~s~ 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPD---GRALAAAS----SDGLIRIWKLEGIKSNLLR--EL-SGHTRGVSDVAFSPDG-----SYLLSGSD 223 (456)
T ss_pred cCceEEEEEcCC---CCeEEEcc----CCCcEEEeecccccchhhc--cc-cccccceeeeEECCCC-----cEEEEecC
Confidence 578999999999 99999998 7999999887433311222 22 6899999999999999 8999998
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
| +|+|||+... ...+.++.+|. ..|++++|+| .++++++|+.|++|+|||+++++++..+.+|.+.|++++|
T Consensus 224 D~tiriwd~~~~-~~~~~~l~gH~-----~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 224 DKTLRIWDLKDD-GRNLKTLKGHS-----TYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred CceEEEeeccCC-CeEEEEecCCC-----CceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 4 9999999443 23888999999 9999999998 7799999999999999999999999999999999999999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
+ ++++|++++.|+.|++||+.++... ..+....... +++++.|+| ++.++++++.|+. +++||++. ...+...
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~-~~~w~l~~-~~~~~~~ 372 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP-NGKYLLSASLDRT-LKLWDLRS-GKSVGTY 372 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC-CCcEEEEecCCCe-EEEEEccC-Ccceeee
Confidence 9 8999999999999999999999842 3333332223 699999998 9999999999998 99999997 5567777
Q ss_pred ecCCCC---eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc-cceeEEEEecCCCCceEE
Q 040307 252 SKHEGS---VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS-MAEINVVRWSPLELDWIA 327 (339)
Q Consensus 252 ~~~~~~---v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l~~ 327 (339)
.+|... +.+...++.+ .++++|+.|+.|++|++.... ......+| ...+..++|+|....+++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~------------~~~~l~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG------------ILQRLEGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred cccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc------------hhhhhcCCCCCceeccccCCCcCeeee
Confidence 777764 3444556777 699999999999999999876 23455677 888999999999987777
Q ss_pred Ee--cCCeEEEEe
Q 040307 328 IA--FVNKLQLLK 338 (339)
Q Consensus 328 ~~--~d~~v~~w~ 338 (339)
.+ .|+.+++|+
T Consensus 440 ~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 440 SSFEGDGLIRLWK 452 (456)
T ss_pred cCcCCCceEEEec
Confidence 66 799999997
No 23
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5e-38 Score=246.23 Aligned_cols=291 Identities=19% Similarity=0.295 Sum_probs=242.0
Q ss_pred CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
..++.+..+.|++.|.++...++ .+++|+ +||.+++|+.. +..... ..+|.++|.+++|.-....
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~~~-----~Iltgs----YDg~~riWd~~--Gk~~~~----~~Ght~~ik~v~~v~~n~~ 158 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGASK-----WILTGS----YDGTSRIWDLK--GKSIKT----IVGHTGPIKSVAWVIKNSS 158 (423)
T ss_pred CCCCccccccchhhhhhhcccCc-----eEEEee----cCCeeEEEecC--CceEEE----EecCCcceeeeEEEecCCc
Confidence 34677888889999999988866 899999 79999996543 433332 3799999998888654410
Q ss_pred CCCCeEEEeC-C-cEEEEeecCCcce--eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC------
Q 040307 86 LNPDIVATSG-D-SLRLWEIHDDRTE--LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR------ 155 (339)
Q Consensus 86 ~~~~~la~~~-~-~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~------ 155 (339)
...|++++ | ++++|.++.++.. ....-.+|+ ..|-++...+ ++..+++|+.|..|.+|+..+
T Consensus 159 --~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk-----~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 159 --SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK-----RSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred --cceEEEecCCceEEEEEecCchhhhhHHhHhcccc-----cceeEEEecC-CCCeEEeecccceeeecccCCCccccc
Confidence 13577777 5 9999999887622 222334777 9999999997 999999999999999999321
Q ss_pred -------------------CeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307 156 -------------------EILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL 216 (339)
Q Consensus 156 -------------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 216 (339)
..++..+.+|..+|.++.|++...+.+++.|.+|+.||+.+++....+... ..+.++
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~----ksl~~i 306 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN----KSLNCI 306 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC----cceeEe
Confidence 136777889999999999999889999999999999999999876666554 689999
Q ss_pred EEecCCCCeEEEEeeCCCeEEEEecCCCCC--ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307 217 EWNKADPRFMATVGMDSNKVVVLDIRFPTN--PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN 294 (339)
Q Consensus 217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 294 (339)
..+| ..++|++|+.|.. +++||.|.+.. +..++.+|+..|.++.|+|..+.+|++++.|+++++||++...
T Consensus 307 ~~~~-~~~Ll~~gssdr~-irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k----- 379 (423)
T KOG0313|consen 307 SYSP-LSKLLASGSSDRH-IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK----- 379 (423)
T ss_pred eccc-ccceeeecCCCCc-eeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC-----
Confidence 9998 8999999999999 99999998543 4567889999999999999998999999999999999999977
Q ss_pred CCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 295 GGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 295 ~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.|+ .+.+|...|.++.|...+ .+++++.|++|++++
T Consensus 380 -------~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 380 -------APLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred -------CcceeeccCCceEEEEeccCCc-eEEeccCcceEEEec
Confidence 344 667899999999998765 689999999999985
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-36 Score=251.03 Aligned_cols=280 Identities=19% Similarity=0.266 Sum_probs=236.3
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|..+|.+++|+|+ +++|++++ .+|.+++|+++...... . ...|...+..+.|+|++ ++++++
T Consensus 7 ~h~~~i~~~~~~~~---~~~l~~~~----~~g~i~i~~~~~~~~~~----~-~~~~~~~i~~~~~~~~~-----~~l~~~ 69 (289)
T cd00200 7 GHTGGVTCVAFSPD---GKLLATGS----GDGTIKVWDLETGELLR----T-LKGHTGPVRDVAASADG-----TYLASG 69 (289)
T ss_pred ccCCCEEEEEEcCC---CCEEEEee----cCcEEEEEEeeCCCcEE----E-EecCCcceeEEEECCCC-----CEEEEE
Confidence 47899999999999 99999999 79999998887544222 2 25788889999999999 788887
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ + .|++|++.+++ ....+..|. ..+.++.|+| +++++++++.++.|.+||+++++....+..|...+.++
T Consensus 70 ~~~~~i~i~~~~~~~--~~~~~~~~~-----~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 70 SSDKTIRLWDLETGE--CVRTLTGHT-----SYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred cCCCeEEEEEcCccc--ceEEEeccC-----CcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 7 5 99999999875 666677776 7899999998 78888888889999999999888888888899999999
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
+|+ ++.++++++.|+.|++||++..+....+. . +...+.++.|+| +++.+++++.++. +++||++. .+++..+
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~--~~~~i~~~~~~~-~~~~l~~~~~~~~-i~i~d~~~-~~~~~~~ 215 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-G--HTGEVNSVAFSP-DGEKLLSSSSDGT-IKLWDLST-GKCLGTL 215 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEccccccceeEe-c--CccccceEEECC-CcCEEEEecCCCc-EEEEECCC-Cceecch
Confidence 999 47777777779999999999776544433 2 566899999998 7788888888988 99999987 5667777
Q ss_pred ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
..|...+.++.|+|++ .++++++.||.+++|++.... .......|...|.+++|+|+++.+++++.|
T Consensus 216 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 216 RGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE------------CVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred hhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce------------eEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 7888899999999996 688888889999999998766 223444778899999999999889999999
Q ss_pred CeEEEEe
Q 040307 332 NKLQLLK 338 (339)
Q Consensus 332 ~~v~~w~ 338 (339)
+.+++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=242.64 Aligned_cols=286 Identities=18% Similarity=0.189 Sum_probs=242.5
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|-+.|.|+++-|. .+.|++|+ .|+++.|||+........ + .+|-..|..+++|+-. .++.++
T Consensus 149 gHlgWVr~vavdP~---n~wf~tgs----~DrtikIwDlatg~Lklt----l-tGhi~~vr~vavS~rH-----pYlFs~ 211 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPG---NEWFATGS----ADRTIKIWDLATGQLKLT----L-TGHIETVRGVAVSKRH-----PYLFSA 211 (460)
T ss_pred hccceEEEEeeCCC---ceeEEecC----CCceeEEEEcccCeEEEe----e-cchhheeeeeeecccC-----ceEEEe
Confidence 36789999999999 99999999 799999977665443333 2 6899999999999998 777777
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ | .|+.||++..+ .++.+.+|- +.|.+++.+| .-+.|++|+.|.+++|||+++...+..+.+|..+|.++
T Consensus 212 gedk~VKCwDLe~nk--vIR~YhGHl-----S~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNK--VIRHYHGHL-----SGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred cCCCeeEEEechhhh--hHHHhcccc-----ceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 7 4 99999999987 778888888 9999999999 88999999999999999999999999999999999999
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
.+. -+-.+++|+.|++|++||++.++....+. +|+..+.+++.+| ....+|+++.|. |+-|++.. +..+..+
T Consensus 284 ~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP-~e~~fASas~dn--ik~w~~p~-g~f~~nl 356 (460)
T KOG0285|consen 284 MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHP-KENLFASASPDN--IKQWKLPE-GEFLQNL 356 (460)
T ss_pred EeecCCCceEEecCCceEEEeeeccCceeEeee---cccceeeEEecCC-chhhhhccCCcc--ceeccCCc-cchhhcc
Confidence 998 36678999999999999999998555443 3678999999999 888999988887 99999987 6677889
Q ss_pred ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
.+|..-|++++.+.|+ ++++|+++|.+.+||.+.+.. .... ...+.| -.......|++.+|...|..|+++..|
T Consensus 357 sgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~n-yQ~~--~t~vqp-GSl~sEagI~as~fDktg~rlit~ead 430 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHN-YQRG--QTIVQP-GSLESEAGIFASCFDKTGSRLITGEAD 430 (460)
T ss_pred ccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcc-cccc--cccccC-CccccccceeEEeecccCceEEeccCC
Confidence 9999999999999997 899999999999999998761 0000 000001 011235679999999999999999999
Q ss_pred CeEEEEe
Q 040307 332 NKLQLLK 338 (339)
Q Consensus 332 ~~v~~w~ 338 (339)
.+|++|+
T Consensus 431 KtIk~~k 437 (460)
T KOG0285|consen 431 KTIKMYK 437 (460)
T ss_pred cceEEEe
Confidence 9999996
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.3e-39 Score=252.47 Aligned_cols=246 Identities=21% Similarity=0.369 Sum_probs=212.2
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
.+.|.++|+++.|+++ +..+++|. .+|.|++|+.+...-.... ..|...|.+++|+|+. ..++
T Consensus 134 lQaHDs~Vr~m~ws~~---g~wmiSgD----~gG~iKyWqpnmnnVk~~~-----ahh~eaIRdlafSpnD-----skF~ 196 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHN---GTWMISGD----KGGMIKYWQPNMNNVKIIQ-----AHHAEAIRDLAFSPND-----SKFL 196 (464)
T ss_pred hhhhcccceeEEEccC---CCEEEEcC----CCceEEecccchhhhHHhh-----HhhhhhhheeccCCCC-----ceeE
Confidence 3468899999999999 99999999 7999999765544433332 4566899999999988 7888
Q ss_pred EeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 93 TSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 93 ~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
+++| +|+|||....+ ....+.+|. -.|.+++|+| ...+|++|+.|..|++||.+++.++.++..|+..|.
T Consensus 197 t~SdDg~ikiWdf~~~k--ee~vL~GHg-----wdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 197 TCSDDGTIKIWDFRMPK--EERVLRGHG-----WDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVL 268 (464)
T ss_pred EecCCCeEEEEeccCCc--hhheeccCC-----CCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEE
Confidence 8885 99999998876 566778887 8999999999 889999999999999999999999999999999999
Q ss_pred EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
.+.|+ ++++|++++.|..++++|+|+.+.... + ..|+..++++.|+|-...+|.+|+.|+. |..|.+.. .+|+.
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-~--r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~-~~p~~ 343 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-Y--RGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGL-EEPLG 343 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHH-h--hcchhhheeeccccccccceeeccCCCc-eEEEeccc-ccccc
Confidence 99999 799999999999999999996553322 3 3478899999999999999999999999 99999875 34443
Q ss_pred -EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 250 -VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 250 -~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.-.+|...|++++|+|-| .+|++|+.|.++++|.-....
T Consensus 344 ~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred CCCcccccceeeeeccccc-eeEeecCCCcceeeeccCCCC
Confidence 445799999999999999 799999999999999765544
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.5e-36 Score=233.71 Aligned_cols=287 Identities=14% Similarity=0.155 Sum_probs=234.5
Q ss_pred eeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 11 VHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 11 ~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
+.+| .|.++|++++.+|+ .+++|+|+ .|..-.||+..... +.. .+ .+|...|+++.|+.++ .
T Consensus 57 ~~tF~~H~~svFavsl~P~---~~l~aTGG----gDD~AflW~~~~ge--~~~--el-tgHKDSVt~~~Fshdg-----t 119 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPN---NNLVATGG----GDDLAFLWDISTGE--FAG--EL-TGHKDSVTCCSFSHDG-----T 119 (399)
T ss_pred eeehhhcCCceEEEEeCCC---CceEEecC----CCceEEEEEccCCc--cee--Ee-cCCCCceEEEEEccCc-----e
Confidence 3444 48999999999999 99999999 89999997776554 332 22 7999999999999999 9
Q ss_pred eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC
Q 040307 90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 167 (339)
+||+|+ + .|+||...++. ....+...- ..|.-+.|+| .+..|++|+.||.+.+|.+.++...+.+.+|..
T Consensus 120 lLATGdmsG~v~v~~~stg~--~~~~~~~e~-----~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGG--EQWKLDQEV-----EDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred EEEecCCCccEEEEEcccCc--eEEEeeccc-----CceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 999998 4 99999999987 444443222 6788999999 999999999999999999999888889999999
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---------------------------------------
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP--------------------------------------- 207 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------------------------------- 207 (339)
++++=.|. +|+.++++..||+|++|++.+++....+....
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 99999999 89999999999999999999886444332100
Q ss_pred ---------CCCCCeEEEEEecC--CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC
Q 040307 208 ---------VQDCPLLRLEWNKA--DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD 276 (339)
Q Consensus 208 ---------~~~~~v~~~~~~p~--~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 276 (339)
.+...+.++.+.|. .-.+.|+|+.||+ |.|||+.. .. ++....|...|..+.|-++ .+|++++.
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~-~~-~R~~c~he~~V~~l~w~~t--~~l~t~c~ 346 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT-IAIYDLAA-ST-LRHICEHEDGVTKLKWLNT--DYLLTACA 346 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccce-EEEEeccc-ch-hheeccCCCceEEEEEcCc--chheeecc
Confidence 01111222222221 3357789999999 99999986 33 4555568999999999994 58999999
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 277 DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 277 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|.|+.||.+++. ......+|...|.+++.+|+.+.+++++.|++.+||++
T Consensus 347 ~g~v~~wDaRtG~------------l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 347 NGKVRQWDARTGQ------------LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred CceEEeeeccccc------------eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 9999999999998 33466689999999999999999999999999999975
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-35 Score=241.45 Aligned_cols=293 Identities=17% Similarity=0.214 Sum_probs=229.1
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|..=|.|+.|+|| |.++|+++ .||++.| ++-.+++......-..+|.+.|.+|+|+||+ ..+++++
T Consensus 189 HskFV~~VRysPD---G~~Fat~g----sDgki~i--yDGktge~vg~l~~~~aHkGsIfalsWsPDs-----~~~~T~S 254 (603)
T KOG0318|consen 189 HSKFVNCVRYSPD---GSRFATAG----SDGKIYI--YDGKTGEKVGELEDSDAHKGSIFALSWSPDS-----TQFLTVS 254 (603)
T ss_pred cccceeeEEECCC---CCeEEEec----CCccEEE--EcCCCccEEEEecCCCCccccEEEEEECCCC-----ceEEEec
Confidence 4567999999999 99999999 7999999 5565666555212234799999999999999 6666665
Q ss_pred -C-cEEEEeecCCcceeEEEeec--------------------------------------CCCccCCCCEEEEEEcCCC
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNS--------------------------------------NKTSEFSSAITSFDWAGFD 135 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~i~~~~~~~~~ 135 (339)
| +++|||+.+.+ +..++.- +.-.+|...|+++..+| +
T Consensus 255 aDkt~KIWdVs~~s--lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d 331 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNS--LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-D 331 (603)
T ss_pred CCceEEEEEeeccc--eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-C
Confidence 6 99999998764 1111110 01224559999999998 8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeee-eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcc-----------eee-
Q 040307 136 TRRVATCSVDTTCVIWDIDREILETQL-VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKER-----------STI- 202 (339)
Q Consensus 136 ~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~- 202 (339)
+++|++|+.||.|.-|+..++..-+.. +.|...|.+++-+....+++++.|.++++.++..... +.-
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence 999999999999999999988765544 6799999999998667788899999999997743310 000
Q ss_pred ------------------EEeC------CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCC
Q 040307 203 ------------------IYEN------PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGS 257 (339)
Q Consensus 203 ------------------~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~ 257 (339)
+... -.-.....+++++| +++.+++|+.|+. |+||.+.... .....+..|.++
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccce-EEEEEecCCcccceeeeecccCC
Confidence 0000 00123456789998 9999999999999 9999998643 344467789999
Q ss_pred eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307 258 VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 258 v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
|+.+++||++ .+||+|...+.+.+||....+ .......-|.+.|.+++|+|+...+++++.|..|.||
T Consensus 490 iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~-----------~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 490 ITDVAYSPDG-AYLAAGDASRKVVLYDVASRE-----------VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred ceEEEECCCC-cEEEEeccCCcEEEEEcccCc-----------eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 9999999999 699999999999999999988 1122333489999999999999988899999999999
Q ss_pred eC
Q 040307 338 KV 339 (339)
Q Consensus 338 ~v 339 (339)
.|
T Consensus 558 sv 559 (603)
T KOG0318|consen 558 SV 559 (603)
T ss_pred Ec
Confidence 86
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=231.10 Aligned_cols=243 Identities=20% Similarity=0.275 Sum_probs=210.1
Q ss_pred eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
..+|.+.|+.+.|+|++ .+||+|+ | .|.+|++.... +....+++|+ ++|+.+.|.+ +++.|++++.
T Consensus 43 l~gh~geI~~~~F~P~g-----s~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHs-----gAVM~l~~~~-d~s~i~S~gt 110 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDG-----SCFASGGSDRAIVLWNVYGDC-ENFWVLKGHS-----GAVMELHGMR-DGSHILSCGT 110 (338)
T ss_pred cCCCcceEEEEEECCCC-----CeEeecCCcceEEEEeccccc-cceeeecccc-----ceeEeeeecc-CCCEEEEecC
Confidence 36899999999999999 8999988 6 99999976553 4667788998 9999999997 9999999999
Q ss_pred CCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 145 DTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
|.+|+.||+++++..+.+++|.+-|+.+.-+ ...++.+++.|+++++||+|+......+. .+.+++++.|. +.
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv~f~-d~ 185 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAVGFK-DT 185 (338)
T ss_pred CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEEEec-cc
Confidence 9999999999999999999999999999876 46788899999999999999887554432 24789999999 58
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
+..+.+|+-|+. |++||++. ......+.+|...|+.+..+|+| .++.+-+.|.++++||++.... .+
T Consensus 186 s~qv~sggIdn~-ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p----------~~ 252 (338)
T KOG0265|consen 186 SDQVISGGIDND-IKVWDLRK-NDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAP----------SQ 252 (338)
T ss_pred ccceeeccccCc-eeeecccc-CcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCC----------CC
Confidence 899999999999 99999998 67789999999999999999999 5999999999999999998771 11
Q ss_pred c-eee-ecc----cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 303 P-ELC-YQS----MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 303 ~-~~~-~~~----~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+ +.+ .+| .......+|+|++..+-+++.|+.+.+|+.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 2 222 232 334678899999998889999999999973
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=250.70 Aligned_cols=292 Identities=17% Similarity=0.229 Sum_probs=241.7
Q ss_pred CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
+++.+.++. |...|.++.|.|. .+.+|++++ .|+.|+||++-.+...+. ++ .+|..+|..++|++++
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~--~~hLlLS~g----mD~~vklW~vy~~~~~lr---tf-~gH~k~Vrd~~~s~~g-- 270 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPK--KGHLLLSGG----MDGLVKLWNVYDDRRCLR---TF-KGHRKPVRDASFNNCG-- 270 (503)
T ss_pred cHhheeeccCCccccchhhhccc--eeeEEEecC----CCceEEEEEEecCcceeh---hh-hcchhhhhhhhccccC--
Confidence 455556654 7899999999994 288999999 699999999876444443 44 7999999999999999
Q ss_pred CCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307 86 LNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV 163 (339)
Q Consensus 86 ~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 163 (339)
.-+.+++ | .+++||+++++ +...+... ..++++.|+|.+.+.|++|+.|+.|+.||+++++.++.+.
T Consensus 271 ---~~fLS~sfD~~lKlwDtETG~--~~~~f~~~------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 271 ---TSFLSASFDRFLKLWDTETGQ--VLSRFHLD------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred ---Ceeeeeecceeeeeeccccce--EEEEEecC------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 5555655 8 99999999998 77777654 4789999999555999999999999999999999999999
Q ss_pred ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307 164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~ 242 (339)
.|-+.|..+.|- ++..+++.+.|+++++|+.+.+.....+... ......++..+| ++.++++-+.++. |.+|.+.
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P-~~~~~~aQs~dN~-i~ifs~~ 415 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHP-NGKWFAAQSMDNY-IAIFSTV 415 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch--hhccCcceecCC-CCCeehhhccCce-EEEEecc
Confidence 999999999999 7999999999999999999998766555554 334567889998 8999999999998 9999875
Q ss_pred CCC--CceEEEecCC--CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe
Q 040307 243 FPT--NPVVVLSKHE--GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW 318 (339)
Q Consensus 243 ~~~--~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 318 (339)
... .....+.+|. +.-..+.||||| .+|++|+.||.+.+||.++.+ .......|..++..+.|
T Consensus 416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k------------l~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK------------LVSKLKAHDQPCIGVDW 482 (503)
T ss_pred cccccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh------------hhhccccCCcceEEEEe
Confidence 422 2334566775 345678999999 599999999999999999977 22356678999999999
Q ss_pred cCCCCc-eEEEecCCeEEEEe
Q 040307 319 SPLELD-WIAIAFVNKLQLLK 338 (339)
Q Consensus 319 ~p~~~~-l~~~~~d~~v~~w~ 338 (339)
+|..+. +++++.||.|++|+
T Consensus 483 HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 483 HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCcceeEecccCceeEecC
Confidence 998765 55778999999995
No 31
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-37 Score=230.00 Aligned_cols=253 Identities=19% Similarity=0.308 Sum_probs=219.5
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
.+...|...+.+..++|++.. .+.+++++ .||.++||+.......+.. + .+|...|.++.|++-..
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~--e~~~~~a~----GDGSLrl~d~~~~s~Pi~~---~-kEH~~EV~Svdwn~~~r---- 117 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENH--ENQVIAAS----GDGSLRLFDLTMPSKPIHK---F-KEHKREVYSVDWNTVRR---- 117 (311)
T ss_pred EEEEeeecccceeEeeecCCC--cceEEEEe----cCceEEEeccCCCCcchhH---H-HhhhhheEEeccccccc----
Confidence 566778889999999999983 45566666 5999999886555544432 2 68999999999999875
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
+.+++++ | +|++|+...+. .+.++.+|. ..|....|+|..++++++++.|+.+++||++.......+..|.
T Consensus 118 ~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh~-----~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~ 190 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNRPN--SVQTFNGHN-----SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN 190 (311)
T ss_pred eeEEeeccCCceEeecCCCCc--ceEeecCCc-----cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc
Confidence 5666666 6 99999998887 788899998 9999999999999999999999999999998765555688999
Q ss_pred CceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 167 REVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 167 ~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
..+.|+.|+ +.+.+++|+.|+.|++||+|..+.+.... ..|...|+.++|+|....+|++++.|-+ ++|||....
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ 267 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQ 267 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--cCCceEEEEEecCcchhhHhhhccccce-EEecccccc
Confidence 999999999 79999999999999999999988665444 3488999999999988999999999999 999999877
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~ 285 (339)
...+.+...|..-|..+.|++..+.++|+++-|+.++||+.
T Consensus 268 ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 DSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 77888888999999999999987789999999999999984
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=241.15 Aligned_cols=282 Identities=18% Similarity=0.280 Sum_probs=229.9
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.+.|.-+.||++ |++||+|+ .|.+..||....+.. +....++ .+|..+|..+.||||. ++|++|
T Consensus 222 ~htdEVWfl~FS~n---GkyLAsaS----kD~Taiiw~v~~d~~-~kl~~tl-vgh~~~V~yi~wSPDd-----ryLlaC 287 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHN---GKYLASAS----KDSTAIIWIVVYDVH-FKLKKTL-VGHSQPVSYIMWSPDD-----RYLLAC 287 (519)
T ss_pred hCCCcEEEEEEcCC---CeeEeecc----CCceEEEEEEecCcc-eeeeeee-ecccCceEEEEECCCC-----CeEEec
Confidence 47899999999999 99999999 899999999877665 4443344 6999999999999999 777777
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCceeE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-DREVYD 171 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~~ 171 (339)
+ + .+.+||+.+++ ....+... +...+.+.+|.| |+..+++|+.|+.+..||+... .+...++- ...|.+
T Consensus 288 g~~e~~~lwDv~tgd--~~~~y~~~----~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~d 359 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGD--LRHLYPSG----LGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHD 359 (519)
T ss_pred CchHheeeccCCcch--hhhhcccC----cCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEE
Confidence 6 5 99999999997 44444332 115788999999 9999999999999999999644 34444332 246899
Q ss_pred EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
++.. +|.++++.+.|..|++++.........+.+ ..+++++..+. +++++++.=.+.. +++||+.. ...+..
T Consensus 360 lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise----~~~its~~iS~-d~k~~LvnL~~qe-i~LWDl~e-~~lv~k 432 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE----EQPITSFSISK-DGKLALVNLQDQE-IHLWDLEE-NKLVRK 432 (519)
T ss_pred EEEcCCCcEEEEEecccceeeechhhhhhhccccc----cCceeEEEEcC-CCcEEEEEcccCe-eEEeecch-hhHHHH
Confidence 9999 899999999999999999887765544333 36899999996 8898888777777 99999995 677788
Q ss_pred EecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceE-
Q 040307 251 LSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI- 326 (339)
Q Consensus 251 ~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~- 326 (339)
+.+|+.. +..-+|--..+.++++|++|+.|+||+...++ ++ ...+|...|++|+|+|..+.++
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-------------ll~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-------------LLAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc-------------eeEeecCCcceeeEEecCCCCHHHhh
Confidence 8888764 44445655444799999999999999999988 55 6668999999999999988766
Q ss_pred EEecCCeEEEEe
Q 040307 327 AIAFVNKLQLLK 338 (339)
Q Consensus 327 ~~~~d~~v~~w~ 338 (339)
++++||+||||.
T Consensus 500 SasDDgtIRIWg 511 (519)
T KOG0293|consen 500 SASDDGTIRIWG 511 (519)
T ss_pred ccCCCCeEEEec
Confidence 578999999996
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=220.31 Aligned_cols=272 Identities=14% Similarity=0.196 Sum_probs=224.0
Q ss_pred CCceeeeeecc-CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 7 KKPGVHTYMAQ-WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 7 ~~~~~~~~~~~-~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
++....+++|+ ..|..++..|+ ++.||+|+ ...|++||++..+..... .+ .+|.+.|.++.|..++
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpd---k~~LAaa~-----~qhvRlyD~~S~np~Pv~--t~-e~h~kNVtaVgF~~dg-- 95 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPD---KKDLAAAG-----NQHVRLYDLNSNNPNPVA--TF-EGHTKNVTAVGFQCDG-- 95 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCC---cchhhhcc-----CCeeEEEEccCCCCCcee--EE-eccCCceEEEEEeecC--
Confidence 45666777775 58999999999 99999999 799999999887765544 55 5899999999999999
Q ss_pred CCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-
Q 040307 86 LNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL- 162 (339)
Q Consensus 86 ~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~- 162 (339)
+.+.+|++ +++|||++... +.+.++ +. ++|+++..+| +...|++|..+|.|++||+....+...+
T Consensus 96 ---rWMyTgseDgt~kIWdlR~~~--~qR~~~-~~-----spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 96 ---RWMYTGSEDGTVKIWDLRSLS--CQRNYQ-HN-----SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred ---eEEEecCCCceEEEEeccCcc--cchhcc-CC-----CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccC
Confidence 99999995 99999999854 444443 33 7999999999 8889999999999999999887665554
Q ss_pred eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceee---EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307 163 VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTI---IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV 238 (339)
Q Consensus 163 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i 238 (339)
......|.++... ++..++.+...|++++|++-....... +.+.+.|.+.+..+.++| ++++||+++.|.+ ++|
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdkt-v~i 241 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKT-VKI 241 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCce-EEE
Confidence 3445678999998 899999999999999999987543222 222345888999999999 9999999999999 999
Q ss_pred EecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe
Q 040307 239 LDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW 318 (339)
Q Consensus 239 ~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 318 (339)
|+....-+....+.+|...++.++||.++ .+|+|++.|+.+++|++...+ +.....+|.....+++.
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k------------~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGK------------EVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCc------------eeeecCCcccccEEEEe
Confidence 99988646667889999999999999999 599999999999999999988 23344456555555543
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-36 Score=260.86 Aligned_cols=281 Identities=14% Similarity=0.177 Sum_probs=241.6
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
..+|-.++|+|. ...++++- ..|.|++||+......-.. .+|.++|..+.|+|.. .++++|||
T Consensus 9 SsRvKglsFHP~---rPwILtsl----HsG~IQlWDYRM~tli~rF-----deHdGpVRgv~FH~~q-----plFVSGGD 71 (1202)
T KOG0292|consen 9 SSRVKGLSFHPK---RPWILTSL----HSGVIQLWDYRMGTLIDRF-----DEHDGPVRGVDFHPTQ-----PLFVSGGD 71 (1202)
T ss_pred cccccceecCCC---CCEEEEee----cCceeeeehhhhhhHHhhh-----hccCCccceeeecCCC-----CeEEecCC
Confidence 468999999999 89999998 6999999998876544443 6899999999999999 89999996
Q ss_pred --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
.|++|+..+.+ ++.++.+|- .-|..+.|++ .--.|+++|.|.+|+||+..+.+++..+.+|...|.|.+|
T Consensus 72 DykIkVWnYk~rr--clftL~GHl-----DYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF 143 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRR--CLFTLLGHL-----DYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF 143 (1202)
T ss_pred ccEEEEEecccce--ehhhhcccc-----ceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence 99999999987 999999998 8999999997 8899999999999999999999999999999999999999
Q ss_pred cC-CcEEEEEeCCCcEEEEECCCCccee--------------------------eEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 175 GG-FNVFASVSGDCSVRVFDLRDKERST--------------------------IIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 175 ~~-~~~l~~~~~d~~i~i~d~~~~~~~~--------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
+| .++++++|-|.+|++||+...+... ......+|+..|+-++|+| .-.+|+
T Consensus 144 hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliV 222 (1202)
T KOG0292|consen 144 HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIV 222 (1202)
T ss_pred CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEE
Confidence 95 8899999999999999986432110 0011234888999999998 888999
Q ss_pred EEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-e
Q 040307 228 TVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-L 305 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~ 305 (339)
+|+.|.. |++|.+.... -.+-+..+|...|.++-|+|.. .++++.++|++|+|||+.... ++ .
T Consensus 223 SG~DDRq-VKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt-------------~v~t 287 (1202)
T KOG0292|consen 223 SGADDRQ-VKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRT-------------SVQT 287 (1202)
T ss_pred ecCCcce-eeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEeccccc-------------ceee
Confidence 9999988 9999987522 1345678999999999999998 599999999999999999987 44 4
Q ss_pred eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.....+..+.++-+|... |++++.|+.+.+|++
T Consensus 288 frrendRFW~laahP~lN-LfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 288 FRRENDRFWILAAHPELN-LFAAGHDSGMIVFKL 320 (1202)
T ss_pred eeccCCeEEEEEecCCcc-eeeeecCCceEEEEE
Confidence 444567899999999986 888888888888764
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=249.12 Aligned_cols=298 Identities=15% Similarity=0.214 Sum_probs=241.0
Q ss_pred eeeeec-cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 11 VHTYMA-QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 11 ~~~~~~-~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
++...- ..+|..++|+.. |+.||.|+. .-|.+-||+|+.+.-.+.+ .+|...+++++++||| +
T Consensus 300 ih~LSis~~~I~t~~~N~t---GDWiA~g~~---klgQLlVweWqsEsYVlKQ-----QgH~~~i~~l~YSpDg-----q 363 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNST---GDWIAFGCS---KLGQLLVWEWQSESYVLKQ-----QGHSDRITSLAYSPDG-----Q 363 (893)
T ss_pred EEEeecccceeeEEEeccc---CCEEEEcCC---ccceEEEEEeeccceeeec-----cccccceeeEEECCCC-----c
Confidence 344443 478999999999 999999994 4579999999998877776 7999999999999999 8
Q ss_pred eEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC-
Q 040307 90 IVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD- 166 (339)
Q Consensus 90 ~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~- 166 (339)
++|+|++ .|+|||...+- +..+|..|+ ..|+.+.|+. .++.+++++.||+|+.||+...+..+++....
T Consensus 364 ~iaTG~eDgKVKvWn~~Sgf--C~vTFteHt-----s~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 364 LIATGAEDGKVKVWNTQSGF--CFVTFTEHT-----SGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred EEEeccCCCcEEEEeccCce--EEEEeccCC-----CceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 9999985 99999999887 999999999 9999999996 99999999999999999999999999886432
Q ss_pred CceeEEEec-CCcEEEEEeCCC-cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 167 REVYDISWG-GFNVFASVSGDC-SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
-...|++.. .|.++.+|+.|. .|.+|++.+++....+ . +|+++|.+++|+| .++.|++++-|.+ |++||+-..
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-s--GHEgPVs~l~f~~-~~~~LaS~SWDkT-VRiW~if~s 510 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-S--GHEGPVSGLSFSP-DGSLLASGSWDKT-VRIWDIFSS 510 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-c--CCCCcceeeEEcc-ccCeEEeccccce-EEEEEeecc
Confidence 234455555 377777887775 5999999999854443 3 3899999999998 9999999999999 999999765
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC-CCCC----CCCCc-ccceee--ecccceeEEE
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR-SGNG----GPSGD-VEPELC--YQSMAEINVV 316 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~----~~~~~-~~~~~~--~~~~~~i~~~ 316 (339)
...+.++. +...+..++|.|+| +.|++++.||.|.+||....... ..++ .+... .+.+.. .......+.+
T Consensus 511 ~~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 511 SGTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred CceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 45566665 46789999999999 69999999999999999876520 0000 00000 011111 1124579999
Q ss_pred EecCCCCceEEEecCCeEEEEeC
Q 040307 317 RWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 317 ~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
++++||..++++|..+.|.+|++
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEEC
Confidence 99999999999999999999985
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.6e-35 Score=237.74 Aligned_cols=286 Identities=16% Similarity=0.211 Sum_probs=242.6
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
+|..+++-..|||. |.++|+|. ..|+|+||++..++..+.. .+ ....++|..++|+.++. +++|+|
T Consensus 57 EH~~~vtVAkySPs---G~yiASGD----~sG~vRIWdtt~~~hiLKn--ef-~v~aG~I~Di~Wd~ds~----RI~avG 122 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPS---GFYIASGD----VSGKVRIWDTTQKEHILKN--EF-QVLAGPIKDISWDFDSK----RIAAVG 122 (603)
T ss_pred cccceeEEEEeCCC---ceEEeecC----CcCcEEEEeccCcceeeee--ee-eecccccccceeCCCCc----EEEEEe
Confidence 47788999999999 99999999 7999999887665433332 34 45789999999999994 555666
Q ss_pred CC-----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCce
Q 040307 95 GD-----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREV 169 (339)
Q Consensus 95 ~~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v 169 (339)
-+ .+.+||. +. .+..+.+|. ..|++++|-|...-.+++|++|++|.+|+-.-.+...++..|..-|
T Consensus 123 EGrerfg~~F~~DS--G~--SvGei~GhS-----r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV 193 (603)
T KOG0318|consen 123 EGRERFGHVFLWDS--GN--SVGEITGHS-----RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFV 193 (603)
T ss_pred cCccceeEEEEecC--CC--ccceeeccc-----eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccce
Confidence 43 5666664 44 567788888 9999999999788899999999999999987777777888999999
Q ss_pred eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC---
Q 040307 170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT--- 245 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~--- 245 (339)
+|+.|+ ++++|++++.||++.+||-.+++....+.....|++.|..++|+| ++..+++++.|.+ ++|||+....
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt-~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKT-IKIWDVSTNSLVS 271 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCce-EEEEEeeccceEE
Confidence 999999 899999999999999999999998877776778999999999999 9999999999999 9999997632
Q ss_pred ---------------------------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 246 ---------------------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 246 ---------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
.++..+.+|...|++++.+|++ ++|++|+.||.|.-|+..
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecC
Confidence 3445567899999999999999 799999999999999999
Q ss_pred CCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 287 GPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.+. -.++.-..|...|.+++-+..+. +++.+.|.+|++..
T Consensus 351 ~g~-----------~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 351 SGT-----------SDRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVIS 390 (603)
T ss_pred Ccc-----------ccccccccccceEEEEeecCCCc-EEEEecCCeEEEEe
Confidence 987 12333467999999999888764 99999999999864
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=240.34 Aligned_cols=276 Identities=17% Similarity=0.292 Sum_probs=227.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
....|+|+.+..+ .+++|. .|++|+|||.+. ..+.. .+ .+|.+.|.|+.|.. +++++|+
T Consensus 196 ~skgVYClQYDD~-----kiVSGl----rDnTikiWD~n~--~~c~~--~L-~GHtGSVLCLqyd~-------rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE-----KIVSGL----RDNTIKIWDKNS--LECLK--IL-TGHTGSVLCLQYDE-------RVIVSGS 254 (499)
T ss_pred cCCceEEEEecch-----hhhccc----ccCceEEecccc--HHHHH--hh-hcCCCcEEeeeccc-------eEEEecC
Confidence 3468999998655 799999 799999966543 33332 33 79999999999864 7888887
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccCCcee
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHDREVY 170 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~v~ 170 (339)
| +|++||+++++ ++.++-+|. .+|..+.|+ +.++++++.|.++.+||+.... +.+.+.+|...|+
T Consensus 255 SDsTvrvWDv~tge--~l~tlihHc-----eaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGE--PLNTLIHHC-----EAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred CCceEEEEeccCCc--hhhHHhhhc-----ceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 5 99999999998 888888887 899999996 4799999999999999997765 4456789999999
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 171 DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 171 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
.+.|+ .+++++++.|.+|++|++.+.+....+ .+|+..|.++.+ .++++++|+.|.+ |++||+.. +.++..
T Consensus 325 vVdfd-~kyIVsASgDRTikvW~~st~efvRtl---~gHkRGIAClQY---r~rlvVSGSSDnt-IRlwdi~~-G~cLRv 395 (499)
T KOG0281|consen 325 VVDFD-DKYIVSASGDRTIKVWSTSTCEFVRTL---NGHKRGIACLQY---RDRLVVSGSSDNT-IRLWDIEC-GACLRV 395 (499)
T ss_pred eeccc-cceEEEecCCceEEEEeccceeeehhh---hcccccceehhc---cCeEEEecCCCce-EEEEeccc-cHHHHH
Confidence 99998 569999999999999999998854443 237778888876 7899999999999 99999998 788999
Q ss_pred EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
+++|+.-|.++.|.. +.+++|+.||+|++||+.... +|. .+.+.+.......|.+.|..+.|..- .+++++.
T Consensus 396 LeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aal-dpr--a~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssH 467 (499)
T KOG0281|consen 396 LEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAAL-DPR--APASTLCLRTLVEHSGRVFRLQFDEF--QIISSSH 467 (499)
T ss_pred HhchHHhhhheeecC---ceeeeccccceEEEEeccccc-CCc--ccccchHHHhhhhccceeEEEeecce--EEEeccC
Confidence 999999999999974 479999999999999999877 221 11111222244578999999999553 6899999
Q ss_pred CCeEEEEeC
Q 040307 331 VNKLQLLKV 339 (339)
Q Consensus 331 d~~v~~w~v 339 (339)
|.+|.+|+.
T Consensus 468 ddtILiWdF 476 (499)
T KOG0281|consen 468 DDTILIWDF 476 (499)
T ss_pred CCeEEEEEc
Confidence 999999983
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=218.88 Aligned_cols=239 Identities=22% Similarity=0.340 Sum_probs=203.3
Q ss_pred ecCCCCceEEEEcCC-CCCCCCCeEEEeCC--cEEEEeecC-CcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 68 FDHPYTPTNIAFFPS-EETLNPDIVATSGD--SLRLWEIHD-DRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~-~~~~~~~~la~~~~--~i~iw~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.+|.+++..++|+|- | .+||+|+. .|+||+... ..+.+...+. +|+ ..|++++|+| .+++|+++
T Consensus 11 ~gh~~r~W~~awhp~~g-----~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk-----rsVRsvAwsp-~g~~La~a 79 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKG-----VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK-----RSVRSVAWSP-HGRYLASA 79 (312)
T ss_pred cCCCCcEEEEEeccCCc-----eEEEeecCCceEEEEecCCCCcEEEEEeccccch-----heeeeeeecC-CCcEEEEe
Confidence 689999999999998 7 79999984 999999984 3344555443 455 8999999999 99999999
Q ss_pred eCCCeEEEEECCCC--eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307 143 SVDTTCVIWDIDRE--ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 143 ~~d~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (339)
+.|.++.||.-..+ +++..+.+|.+.|.|++|+ ++++||++++|+.|-||.+..............|...|..+.|+
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 99999999987654 5888999999999999999 89999999999999999998766544444444588899999999
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCC--CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRF--PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP 297 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 297 (339)
| ...+|++++.|++ |++|+-.. .-.+.+++.+|...|.+++|+|.| ..|++++.|++++||.....-
T Consensus 160 P-t~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~-------- 228 (312)
T KOG0645|consen 160 P-TEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL-------- 228 (312)
T ss_pred C-CcceeEEeccCCe-EEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc--------
Confidence 9 8899999999999 99997652 235788999999999999999999 599999999999999866432
Q ss_pred CCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 298 SGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
...|...++.+.|. ++ .+++++.|+.|++|+
T Consensus 229 --------~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 229 --------SGMHSRALYDVPWD-NG-VIASGGGDDAIRLFK 259 (312)
T ss_pred --------chhcccceEeeeec-cc-ceEeccCCCEEEEEE
Confidence 22467789999999 55 477899999999986
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=239.98 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=231.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
..++|.+++|||.. ..-+|+.+ .-.+.||+.. +..... .+ ......|+++.|..|| ++||+|.
T Consensus 25 e~~~vssl~fsp~~--P~d~aVt~-----S~rvqly~~~--~~~~~k--~~-srFk~~v~s~~fR~DG-----~LlaaGD 87 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKH--PYDFAVTS-----SVRVQLYSSV--TRSVRK--TF-SRFKDVVYSVDFRSDG-----RLLAAGD 87 (487)
T ss_pred ccCcceeEecCCCC--CCceEEec-----ccEEEEEecc--hhhhhh--hH-HhhccceeEEEeecCC-----eEEEccC
Confidence 35789999999962 34466666 5789995544 333222 12 4567889999999999 8999998
Q ss_pred C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
+ .|+|+|..+.. .+..+..|+ .++..+.|+|.++..+++|+.|+.+++||+.+......+.+|++.|.|.+
T Consensus 88 ~sG~V~vfD~k~r~--iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRV--ILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred CcCcEEEeccccHH--HHHHHhhcc-----CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 5 99999965543 667888888 99999999998999999999999999999999887668899999999999
Q ss_pred ec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 174 WG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 174 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
|+ .+.++++|+.||.|++||+|........+ .|..+|.++.+-| .|..+++++.+. +++||+..+++.+..+
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---nhg~pVe~vl~lp-sgs~iasAgGn~--vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---NHGCPVESVLALP-SGSLIASAGGNS--VKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCCceeEEe---cCCCceeeEEEcC-CCCEEEEcCCCe--EEEEEecCCceehhhh
Confidence 99 46789999999999999999986222222 3678999999998 889998877654 9999999878888888
Q ss_pred ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
..|...|+|+++..++ ..|++++-|+.|++||+.+.+ ........++|.+++.+|+++.+++|-.|
T Consensus 235 ~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~K-------------vv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYK-------------VVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred hcccceEEEEEeecCC-ceEeecccccceEEEEccceE-------------EEEeeecccceeeEEecCCCceEEEeccc
Confidence 8899999999999998 699999999999999988776 55666788999999999999989999899
Q ss_pred CeEEE
Q 040307 332 NKLQL 336 (339)
Q Consensus 332 ~~v~~ 336 (339)
|.+.+
T Consensus 301 Glv~~ 305 (487)
T KOG0310|consen 301 GLVSI 305 (487)
T ss_pred ceeee
Confidence 88765
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-35 Score=214.56 Aligned_cols=275 Identities=16% Similarity=0.221 Sum_probs=226.6
Q ss_pred eeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 10 GVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 10 ~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
.+..+ .++++|.++.|+-+ |+|.++++ .|.+|++ |++..+.+.. ++ .+|...|..++.+.|.
T Consensus 9 r~~~l~~~qgaV~avryN~d---GnY~ltcG----sdrtvrL--WNp~rg~lik--tY-sghG~EVlD~~~s~Dn----- 71 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVD---GNYCLTCG----SDRTVRL--WNPLRGALIK--TY-SGHGHEVLDAALSSDN----- 71 (307)
T ss_pred hceeecccccceEEEEEccC---CCEEEEcC----CCceEEe--ecccccceee--ee-cCCCceeeeccccccc-----
Confidence 33433 36789999999999 99999988 7999999 5555555554 44 6899999999999998
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC--eeeeeeec
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE--ILETQLVA 164 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~ 164 (339)
.-+++|+ | .+.+||+++++ ..+.+.+|. +.|+.+.|+. +...+++|+.|.++++||.++. ++++.+..
T Consensus 72 skf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~-----aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGK--VDRRFRGHL-----AQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred cccccCCCCceEEEEEcccCe--eeeeccccc-----ceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhh
Confidence 5666655 6 99999999998 889999998 9999999996 8899999999999999998764 58888888
Q ss_pred cCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 165 HDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 165 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
..+.|.++... +..|++|+.||+++.||+|.+....-. -..+|+++.|++ +++..++++.++. +++.|-.+
T Consensus 144 a~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~-d~nc~La~~l~st-lrLlDk~t- 214 (307)
T KOG0316|consen 144 AKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSK-DGNCSLASSLDST-LRLLDKET- 214 (307)
T ss_pred hcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhh-----cCCcceeEEecC-CCCEEEEeeccce-eeecccch-
Confidence 88899999887 778999999999999999998844332 235999999998 9999999999999 99999887
Q ss_pred CCceEEEecCCCCeeE--EEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccce-eEEEEecC
Q 040307 245 TNPVVVLSKHEGSVNG--ISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAE-INVVRWSP 320 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~--~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~~p 320 (339)
++.+....+|...-+. .+++... ..+++|++||.|.+||+.... .+... .+... |.+++++|
T Consensus 215 GklL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~-------------~~sk~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 215 GKLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDET-------------QISKLSVVSTVIVTDLSCHP 280 (307)
T ss_pred hHHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccce-------------eeeeeccCCceeEEeeeccc
Confidence 7889999999875544 4555555 589999999999999999987 33333 34444 89999999
Q ss_pred CCCceEEEecCC
Q 040307 321 LELDWIAIAFVN 332 (339)
Q Consensus 321 ~~~~l~~~~~d~ 332 (339)
.-..++++...+
T Consensus 281 ~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 281 TMDDFITATGHG 292 (307)
T ss_pred CccceeEecCCc
Confidence 987777655433
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=250.74 Aligned_cols=285 Identities=19% Similarity=0.277 Sum_probs=220.0
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|+.||.-++|+|. +.+||+|+ .|+.+++||+......... .+|++.|.++.|+|+-.. .+|++|.
T Consensus 104 He~Pvi~ma~~~~---g~LlAtgg----aD~~v~VWdi~~~~~th~f-----kG~gGvVssl~F~~~~~~---~lL~sg~ 168 (775)
T KOG0319|consen 104 HEAPVITMAFDPT---GTLLATGG----ADGRVKVWDIKNGYCTHSF-----KGHGGVVSSLLFHPHWNR---WLLASGA 168 (775)
T ss_pred cCCCeEEEEEcCC---CceEEecc----ccceEEEEEeeCCEEEEEe-----cCCCceEEEEEeCCccch---hheeecC
Confidence 6899999999999 99999999 7999999888765444433 799999999999998742 5677776
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-----------------
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE----------------- 156 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----------------- 156 (339)
| .+++||+.+... ++.++..|. +.|++++|++ ++..+++++.|..+.+||+.+.
T Consensus 169 ~D~~v~vwnl~~~~t-cl~~~~~H~-----S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~ 241 (775)
T KOG0319|consen 169 TDGTVRVWNLNDKRT-CLHTMILHK-----SAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVR 241 (775)
T ss_pred CCceEEEEEcccCch-HHHHHHhhh-----hheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEE
Confidence 4 999999997653 566777777 8888888887 6777777777777777776431
Q ss_pred --------------------------------------------------------------------------------
Q 040307 157 -------------------------------------------------------------------------------- 156 (339)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (339)
T Consensus 242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG 321 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG 321 (775)
T ss_pred echhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcC
Confidence
Q ss_pred ------------------------e----------eeeeeeccCCceeEEE-ecCCcEEEEEeCCCcEEEE---------
Q 040307 157 ------------------------I----------LETQLVAHDREVYDIS-WGGFNVFASVSGDCSVRVF--------- 192 (339)
Q Consensus 157 ------------------------~----------~~~~~~~~~~~v~~~~-~~~~~~l~~~~~d~~i~i~--------- 192 (339)
. ....+.+|+..|.++. |+.+.+|++|+.|.++++|
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh
Confidence 0 0011223444455554 2234455555555555555
Q ss_pred --------------------------------------ECCCCc--ceeeEE----eCCCCCCCeEEEEEecCCCCeEEE
Q 040307 193 --------------------------------------DLRDKE--RSTIIY----ENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 193 --------------------------------------d~~~~~--~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
++...+ .....+ ....|+..|++++.+| +..++|+
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT 480 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT 480 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence 444411 011111 1124778999999999 8899999
Q ss_pred EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eee
Q 040307 229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCY 307 (339)
Q Consensus 229 ~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~ 307 (339)
|+.|.+ .+||++.. ...+..+.+|...|++|.|+|.. ++++|+|.|++|+||.+++.. ++ .+.
T Consensus 481 ~SqDkt-aKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS-------------ClkT~e 544 (775)
T KOG0319|consen 481 GSQDKT-AKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS-------------CLKTFE 544 (775)
T ss_pred cccccc-eeeecccC-ceEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce-------------eeeeec
Confidence 999999 99999995 67889999999999999999998 799999999999999999988 55 556
Q ss_pred cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 308 QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|...|..+.|-.++..|++++.||-+++|++
T Consensus 545 GH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 545 GHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred CccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 79999999999999999999999999999986
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.5e-36 Score=223.69 Aligned_cols=287 Identities=16% Similarity=0.179 Sum_probs=241.5
Q ss_pred CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
.-++....|..||..++|||-.+.|-+|++++ .|+.-.+ -+.+++.+.- ++ .+|.+.|++.....+.
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~----kd~~pml--r~g~tgdwig--tf-eghkgavw~~~l~~na---- 71 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISAS----KDGKPML--RNGDTGDWIG--TF-EGHKGAVWSATLNKNA---- 71 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEec----cCCCchh--ccCCCCCcEE--ee-eccCcceeeeecCchh----
Confidence 34677888999999999998766699999999 7999888 7777777776 55 6999999999998887
Q ss_pred CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeec
Q 040307 88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVA 164 (339)
Q Consensus 88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~ 164 (339)
...|+++ | +.++||.-++. .+..++ |+ .-|..++|+. +.++|++|+.+..++|||++..+ +...+.+
T Consensus 72 -~~aasaaadftakvw~a~tgd--elhsf~-hk-----hivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 72 -TRAASAAADFTAKVWDAVTGD--ELHSFE-HK-----HIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred -hhhhhhcccchhhhhhhhhhh--hhhhhh-hh-----heeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 6666666 6 99999998886 555554 34 6799999996 99999999999999999998765 6677889
Q ss_pred cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
|.+.|..+.|+ ..+.|++.+.|++||+||.+++.....+... .+|+++..++ +|++|.++. .++ |.+||...
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~-dG~ilTia~-gss-V~Fwdaks 214 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQ-DGRILTIAY-GSS-VKFWDAKS 214 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----CCCcceeecc-CCCEEEEec-Cce-eEEecccc
Confidence 99999999999 7888888899999999999999877666544 6899999996 888887643 344 99999987
Q ss_pred CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEEecCCC
Q 040307 244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLE 322 (339)
Q Consensus 244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~ 322 (339)
-.+++.... ...|.+...+|+. ..+++|++|..++.||+.++. +... ..+|.++|.++.|+|+|
T Consensus 215 -f~~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge------------Ei~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 215 -FGLLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE------------EIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred -ccceeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccCCc------------eeeecccCCCCceEEEEECCCC
Confidence 445565554 4578999999998 599999999999999999988 3333 46899999999999999
Q ss_pred CceEEEecCCeEEEEeC
Q 040307 323 LDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 323 ~~l~~~~~d~~v~~w~v 339 (339)
...++++.||+||||++
T Consensus 280 E~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQT 296 (334)
T ss_pred ceeeccCCCceEEEEEe
Confidence 97888999999999974
No 43
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.7e-35 Score=238.70 Aligned_cols=294 Identities=14% Similarity=0.185 Sum_probs=229.3
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+...|.++++.|. |-+|++|+ .|..|++||++.-...+.....+...-...|++++|++.+. .+|+..+
T Consensus 166 gtk~Vsal~~Dp~---GaR~~sGs----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~----~iLvvsg 234 (641)
T KOG0772|consen 166 GTKIVSALAVDPS---GARFVSGS----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD----QILVVSG 234 (641)
T ss_pred CceEEEEeeecCC---Cceeeecc----ccceEEEEecccccccchhhhccCcccccccceeeecCCCC----eEEEEec
Confidence 3568999999999 99999999 79999999998666555543344345567899999999995 5555555
Q ss_pred C-cEEEEeecCCcceeEEEeecC-------CCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeee---
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSN-------KTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLV--- 163 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~--- 163 (339)
. ..+|+|-+..+ .....++. ...+|...+++.+|+|.+.+.|++++.||++++||++..+ .+..++
T Consensus 235 ~aqakl~DRdG~~--~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 235 SAQAKLLDRDGFE--IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred CcceeEEccCCce--eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 5 99999977654 33332221 1234448999999999888999999999999999997654 233332
Q ss_pred --ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC--CeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307 164 --AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC--PLLRLEWNKADPRFMATVGMDSNKVVV 238 (339)
Q Consensus 164 --~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d~~~i~i 238 (339)
+..-+++.++|+ ++.+||+|+.||.|.+|+.++......+.....|.. .|+++.|++ +|++|++-+.|+. +++
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~t-LKv 390 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDT-LKV 390 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCc-eee
Confidence 233468899999 899999999999999999977654444443344555 899999997 9999999999999 999
Q ss_pred EecCCCCCceEEEecCC--CCeeEEEeccCCCCeEEEEeC------CCcEEEEEecCCCCCCCCCCCCCcccceeeeccc
Q 040307 239 LDIRFPTNPVVVLSKHE--GSVNGISWAPLYGRRLCSVAD------DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM 310 (339)
Q Consensus 239 ~d~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (339)
||+++..+++....+-. .+-+.++|||+. ++|++|+. .|.+.+||..+.. ....+.-..
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d------------~v~ki~i~~ 457 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLD------------TVYKIDIST 457 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEecccee------------eEEEecCCC
Confidence 99999888887766533 356789999998 69998873 4789999988877 122333347
Q ss_pred ceeEEEEecCCCCceEEEecCCeEEEE
Q 040307 311 AEINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 311 ~~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
..|..+.|+|.-..+++++.||++++|
T Consensus 458 aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 458 ASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ceEEEEeecchhhheeeecCCCceEEE
Confidence 789999999998889999999999886
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-34 Score=241.07 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=231.6
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+.++|-++.|+|. ...++++- ++|.|.||+++........ .-..-+|.+..|-+.. +.+++|+
T Consensus 12 rSdRVKsVd~HPt---ePw~la~L----ynG~V~IWnyetqtmVksf-----eV~~~PvRa~kfiaRk-----nWiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFHPT---EPWILAAL----YNGDVQIWNYETQTMVKSF-----EVSEVPVRAAKFIARK-----NWIVTGS 74 (794)
T ss_pred cCCceeeeecCCC---CceEEEee----ecCeeEEEecccceeeeee-----eecccchhhheeeecc-----ceEEEec
Confidence 6789999999999 88999988 6999999887765433322 3356789999999988 8999999
Q ss_pred C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccCCceeEE
Q 040307 96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHDREVYDI 172 (339)
Q Consensus 96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~v~~~ 172 (339)
| .|+||+.++.+ .+..|..|. .-|++++.+| ...++++++.|-+|++||-+.. .+.+++.+|...|.++
T Consensus 75 DD~~IrVfnynt~e--kV~~FeAH~-----DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGE--KVKTFEAHS-----DYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred CCceEEEEecccce--eeEEeeccc-----cceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 6 99999999998 899999998 9999999999 8899999999999999998755 4778899999999999
Q ss_pred Eec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 173 SWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 173 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
+|+ +.+.|++++-|++|++|.+.++..... .++ |...|+++.+-+. +.-+|++|+.|.. ++|||.++ ..+++
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT-l~g--HekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQt-k~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFT-LEG--HEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQT-KSCVQ 221 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCCCCcee-eec--cccCcceEEeccCCCcceEEecCCCce-EEEeecch-HHHHH
Confidence 999 689999999999999999998874433 334 8899999999862 2349999999999 99999998 78999
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307 250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
++.+|...|..+.|+|.-+ ++++|++||+++||+..+.. ++ ....-..++|++++-.+.+.. ++.+
T Consensus 222 TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~-----------lE-~tLn~gleRvW~I~~~k~~~~-i~vG 287 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYK-----------LE-KTLNYGLERVWCIAAHKGDGK-IAVG 287 (794)
T ss_pred HhhcccccceEEEecCCCc-EEEEecCCccEEEecCccee-----------hh-hhhhcCCceEEEEeecCCCCe-EEEe
Confidence 9999999999999999996 99999999999999998876 11 122234567999998887764 5555
Q ss_pred cCCe
Q 040307 330 FVNK 333 (339)
Q Consensus 330 ~d~~ 333 (339)
.|..
T Consensus 288 ~Deg 291 (794)
T KOG0276|consen 288 FDEG 291 (794)
T ss_pred ccCC
Confidence 4444
No 45
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-35 Score=250.92 Aligned_cols=207 Identities=18% Similarity=0.256 Sum_probs=186.5
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
....-.-+.|.+||+.++|+|+ .++|++++ +|+++++|.++........ .+|..+|+.+.|+|.|
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd---~rfLlScS----ED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P~G--- 505 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPD---RRFLLSCS----EDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAPRG--- 505 (707)
T ss_pred CceeEEeecCCCceeeeeeccc---ccceeecc----CCcceeeeecccceeEEEe-----cCCCcceeeEEecCCc---
Confidence 3444446679999999999999 99999999 8999999887765544443 6999999999999999
Q ss_pred CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA 164 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 164 (339)
.++|+++ | +.++|..+... +.+.+.+|- +.|.|+.|+| +.+++++||.|.+|++||+.+|..++.+.+
T Consensus 506 --yYFatas~D~tArLWs~d~~~--PlRifaghl-----sDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 506 --YYFATASHDQTARLWSTDHNK--PLRIFAGHL-----SDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred --eEEEecCCCceeeeeecccCC--chhhhcccc-----cccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecC
Confidence 9999998 4 99999999876 889999998 9999999999 999999999999999999999999999999
Q ss_pred cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
|.++|.+++|+ .|.+|++|+.|+.|.+||+.+++....+.. |.+.|.++.|+. +|..||+|+.|.. |++||+..
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~-dg~vLasgg~Dns-V~lWD~~~ 650 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG---HTGTIYSLSFSR-DGNVLASGGADNS-VRLWDLTK 650 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc---ccCceeEEEEec-CCCEEEecCCCCe-EEEEEchh
Confidence 99999999999 799999999999999999999885555433 588999999997 9999999999999 99999875
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=244.39 Aligned_cols=279 Identities=18% Similarity=0.232 Sum_probs=234.9
Q ss_pred cCCeeEEEee-ecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 17 QWPISTVAWS-VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 17 ~~~v~~i~~s-p~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
.+.|.+++|- |+ .++||+++ ..+.+++|+.. +..... ..+|...|.++....++ .+||+|+
T Consensus 323 ndEI~Dm~~lG~e---~~~laVAT----Ns~~lr~y~~~--~~~c~i----i~GH~e~vlSL~~~~~g-----~llat~s 384 (775)
T KOG0319|consen 323 NDEILDMKFLGPE---ESHLAVAT----NSPELRLYTLP--TSYCQI----IPGHTEAVLSLDVWSSG-----DLLATGS 384 (775)
T ss_pred chhheeeeecCCc---cceEEEEe----CCCceEEEecC--CCceEE----EeCchhheeeeeecccC-----cEEEEec
Confidence 4688999876 55 78999999 59999997443 333332 37999999999966677 7999999
Q ss_pred -C-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-----ee----eee
Q 040307 96 -D-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-----LE----TQL 162 (339)
Q Consensus 96 -~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-----~~----~~~ 162 (339)
| ++++|.++++. ..++....+|. ..|.+++++.....+|+++|.|+++++|++...+ .. ...
T Consensus 385 KD~svilWr~~~~~~~~~~~a~~~gH~-----~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSKSLCVAQANGHT-----NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred CCceEEEEEecCCcchhhhhhhhcccc-----cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 5 99999995543 33555666777 8999999986567899999999999999997632 11 122
Q ss_pred eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 163 VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 163 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
..|...|++++++ ++.+++|||.|++.++|++....... ... +|...+.++.|+| ..+.+++++.|.+ |+||.+
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~-vLs--GH~RGvw~V~Fs~-~dq~laT~SgD~T-vKIW~i 534 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG-VLS--GHTRGVWCVSFSK-NDQLLATCSGDKT-VKIWSI 534 (775)
T ss_pred HhhcccccceEecCCCceEEecccccceeeecccCceEEE-Eee--CCccceEEEEecc-ccceeEeccCCce-EEEEEe
Confidence 4699999999999 78899999999999999999555332 333 4889999999998 8899999999999 999999
Q ss_pred CCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecC
Q 040307 242 RFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSP 320 (339)
Q Consensus 242 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p 320 (339)
.+ ..++.++.+|...|..+.|-.++ +.|++++.||.+++|++++.. +. ..-.|...|++++-+|
T Consensus 535 s~-fSClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e-------------C~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 535 ST-FSCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE-------------CEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred cc-ceeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh-------------hhhhhhhccceeEEEeecC
Confidence 98 77899999999999999999999 699999999999999999988 55 5557999999999999
Q ss_pred CCCceEEEecCCeEEEEe
Q 040307 321 LELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 321 ~~~~l~~~~~d~~v~~w~ 338 (339)
....+++++.|+.|.+|+
T Consensus 600 ~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 600 LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEecCCCeEEEEee
Confidence 998888999999999996
No 47
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=200.59 Aligned_cols=299 Identities=17% Similarity=0.220 Sum_probs=233.3
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC------ccccee----eEeecCCCCceEEEEc
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS------DFSADN----RLIFDHPYTPTNIAFF 80 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~------~~~~~~----~~~~~~~~~v~~l~~~ 80 (339)
+..++....|.+++|+|. |.+.|+|+ ...+++|..+..-.. .....+ .....|.+.|+|.+|+
T Consensus 26 i~~l~dsqairav~fhp~---g~lyavgs----nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 26 INILEDSQAIRAVAFHPA---GGLYAVGS----NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEecchhheeeEEecCC---CceEEecc----CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 444555679999999999 99999999 689999976542110 011100 1234688999999999
Q ss_pred CCCCCCCCCeEEEeCC--cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcC--C-CCCEEEEEeC-CCeEEEE
Q 040307 81 PSEETLNPDIVATSGD--SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAG--F-DTRRVATCSV-DTTCVIW 151 (339)
Q Consensus 81 ~~~~~~~~~~la~~~~--~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~~l~~~~~-d~~v~i~ 151 (339)
|.+ .++|+|++ +|++..++... ......+.-|. +.|..++|-. . .+.+|++++. |..|++-
T Consensus 99 ~~g-----eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd-----gtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 99 PCG-----ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD-----GTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred Ccc-----CeEEecCCCceEEEEecccccccccCcceeeeecC-----CceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 999 89999995 88887766543 11223445555 8999999963 1 2346666553 6778888
Q ss_pred ECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC----CCCCCeEEEEEecCCCCeE
Q 040307 152 DIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP----VQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 152 d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l 226 (339)
|..+++....+.+|.+.|.++ ++ ++-.|++|+.|.+|++||+|-+.....+.... .....|.+++..| .|++|
T Consensus 169 dc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll 246 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLL 246 (350)
T ss_pred ecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-Cccee
Confidence 989999999999999998776 44 69999999999999999999887655443221 1235789999999 99999
Q ss_pred EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307 227 ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (339)
++|..|.. ..+||++. +.+++.+..|...|+++.|+|.. .++++++.|..|++=|++..-. ..++....
T Consensus 247 ~sg~~dss-c~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla--------~el~~~vv 315 (350)
T KOG0641|consen 247 ASGHADSS-CMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLA--------HELPIMVV 315 (350)
T ss_pred eeccCCCc-eEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchh--------hcCceEEE
Confidence 99999999 99999997 78899999999999999999998 7999999999999999987540 01123345
Q ss_pred ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 307 YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 307 ~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
-.|...+..+.|+|..-.+++.+.|.++.+|-+
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 578999999999999877899999999999963
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=224.49 Aligned_cols=237 Identities=17% Similarity=0.240 Sum_probs=212.1
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|.|+++.|.+ .+|++|+ | +++|||+.+++ +..++.+|. ..|..+++++ ...++++++.|
T Consensus 148 ~gHlgWVr~vavdP~n-----~wf~tgs~DrtikIwDlatg~--LkltltGhi-----~~vr~vavS~-rHpYlFs~ged 214 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGN-----EWFATGSADRTIKIWDLATGQ--LKLTLTGHI-----ETVRGVAVSK-RHPYLFSAGED 214 (460)
T ss_pred hhccceEEEEeeCCCc-----eeEEecCCCceeEEEEcccCe--EEEeecchh-----heeeeeeecc-cCceEEEecCC
Confidence 5899999999999998 8999998 5 99999999998 888999998 8999999997 78899999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
+.|+.||++..+.++.+.+|-+.|.|++.+ .-+.|++|+.|.++++||+|+...... .. +|..+|.++.+.| ..-
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~-l~--GH~~~V~~V~~~~-~dp 290 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV-LS--GHTNPVASVMCQP-TDP 290 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-ec--CCCCcceeEEeec-CCC
Confidence 999999999999999999999999999999 478999999999999999999874433 33 4889999999998 555
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
.+++|+.|++ |++||++. ++....+..|+..|++++.+|.. ..+|+++.| .++-|++..+. -..
T Consensus 291 qvit~S~D~t-vrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~------------f~~ 354 (460)
T KOG0285|consen 291 QVITGSHDST-VRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGE------------FLQ 354 (460)
T ss_pred ceEEecCCce-EEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccc------------hhh
Confidence 6789999999 99999998 67788999999999999999998 588888876 78999998877 233
Q ss_pred eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.+.+|.+-|++++-..|+ .+++++.+|.+.+|+
T Consensus 355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ccccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 566899999999999988 688999999999997
No 49
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-34 Score=229.49 Aligned_cols=261 Identities=18% Similarity=0.349 Sum_probs=220.7
Q ss_pred CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc------cceeeEeecCCCCceEEEEcC
Q 040307 8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF------SADNRLIFDHPYTPTNIAFFP 81 (339)
Q Consensus 8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~------~~~~~~~~~~~~~v~~l~~~~ 81 (339)
-+....+.|++.|..+.+.|. +..++|+++ ..+.|.||++....... .....+ .+|.+.-++|+|++
T Consensus 115 v~i~~~i~h~gEVnRaRymPQ--np~iVAt~t----~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQ--NPNIVATKT----SSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNR 187 (422)
T ss_pred eEEEEeccCCccchhhhhCCC--CCcEEEecC----CCCCEEEEEeccCCCcccccccCCCceEE-Eeeccccccccccc
Confidence 345566779999999999998 477888888 79999999987544332 222234 68988889999999
Q ss_pred CCCCCCCCeEEEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307 82 SEETLNPDIVATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID 154 (339)
Q Consensus 82 ~~~~~~~~~la~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 154 (339)
... -.|++++ + +|++||+.... ..+...+.+|. ..|..++|+|.+..+|++++.|+.+.|||++
T Consensus 188 ~~~----g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-----~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 188 QQE----GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-----DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred ccc----eeEeeccCCCcEEEEeccccccCCccccceEEeecCC-----cceehhhccccchhhheeecCCCeEEEEEcC
Confidence 885 5667766 4 99999997643 34566778888 9999999999999999999999999999999
Q ss_pred --CCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307 155 --REILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG 230 (339)
Q Consensus 155 --~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 230 (339)
+.++.....+|.+.|+|++|+ ++.+||+|+.|++|++||+|+...+...+.. |+..|.++.|+|....+||+++
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecc
Confidence 556667778999999999999 6889999999999999999999876666665 8899999999999999999999
Q ss_pred eCCCeEEEEecCCCC-------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 231 MDSNKVVVLDIRFPT-------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 231 ~d~~~i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
.|+. +.+||+..-+ +++....+|...|..+.|+|..+..|++.++|+.+.||++..
T Consensus 337 ~D~r-l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 337 TDRR-LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCc-EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999 9999997543 234677789999999999999998999999999999999874
No 50
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=228.89 Aligned_cols=276 Identities=18% Similarity=0.220 Sum_probs=233.6
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..|.++|.|++=+|. .-..+|+|+ .||.|+||++......... ..|.+.|..|++.. + .++.+
T Consensus 63 ~gHrdGV~~lakhp~--~ls~~aSGs----~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~-~-----~~~tv 125 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPN--KLSTVASGS----CDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ-T-----SFFTV 125 (433)
T ss_pred cccccccchhhcCcc--hhhhhhccc----cCceEEEEehhhhhhhhee-----ecccCceeeEEecc-c-----ceEEe
Confidence 457899999999999 237899999 7999999887654433332 68999999999987 4 57777
Q ss_pred eCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 94 SGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 94 ~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
|.| +|+.|.++.. +..++.+. ..+..+.-+. .++.++++++ .|.|||.+...++..+.-..+.|.++
T Consensus 126 gdDKtvK~wk~~~~---p~~tilg~------s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP---PLHTILGK------SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred cCCcceeeeeccCC---cceeeecc------cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 777 9999999875 66666654 4677887775 7788999885 68999999888999998777889999
Q ss_pred Eec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 173 SWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 173 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
.|+ ..++|++|+.|+.|.+||+|+......+... ..-+.++|+| ++..+.++++|.+ ++.||++....|+..
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----mRTN~IswnP-eafnF~~a~ED~n-lY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----MRTNTICWNP-EAFNFVAANEDHN-LYTYDMRNLSRPLNV 267 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceeeee----ccccceecCc-cccceeecccccc-ceehhhhhhcccchh
Confidence 999 4788999999999999999999876665543 4667899999 9999999999999 999999999999999
Q ss_pred EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEEE
Q 040307 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~ 328 (339)
..+|...|.++.|||.| +-+++||.|.+|+||...... ...++ .-...|.++.||.|.+++++|
T Consensus 268 ~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~-------------SRdiYhtkRMq~V~~Vk~S~Dskyi~SG 333 (433)
T KOG0268|consen 268 HKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGH-------------SRDIYHTKRMQHVFCVKYSMDSKYIISG 333 (433)
T ss_pred hcccceeEEEeccCCCc-chhccccccceEEEeecCCCc-------------chhhhhHhhhheeeEEEEeccccEEEec
Confidence 99999999999999999 699999999999999999877 22222 234579999999999999999
Q ss_pred ecCCeEEEEe
Q 040307 329 AFVNKLQLLK 338 (339)
Q Consensus 329 ~~d~~v~~w~ 338 (339)
+.|+.||+|+
T Consensus 334 Sdd~nvRlWk 343 (433)
T KOG0268|consen 334 SDDGNVRLWK 343 (433)
T ss_pred CCCcceeeee
Confidence 9999999997
No 51
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.6e-33 Score=247.97 Aligned_cols=291 Identities=19% Similarity=0.307 Sum_probs=233.6
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC------c-ccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS------D-FSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~------~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
...|++++.+|+ +..+|+|+ ...|+.++||+.+.-.. + ..........|.+.|+|+.|+||| +
T Consensus 13 ~~~IfSIdv~pd---g~~~aTgG--q~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-----~ 82 (942)
T KOG0973|consen 13 EKSIFSIDVHPD---GVKFATGG--QVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-----S 82 (942)
T ss_pred CeeEEEEEecCC---ceeEecCC--ccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-----C
Confidence 456999999999 99999998 34488888987653210 1 111001125799999999999999 9
Q ss_pred eEEEeCC--cEEEEeecC----------C------cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 90 IVATSGD--SLRLWEIHD----------D------RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 90 ~la~~~~--~i~iw~~~~----------~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
+||+|+| .|.||.... + .++....+.+|. ..|..++|+| ++.+|++++.|++|.||
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-----~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-----SDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-----CccceeccCC-CccEEEEecccceEEEE
Confidence 9999997 899999873 0 156778888888 9999999999 99999999999999999
Q ss_pred ECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeC---CCCCCCeEEEEEecCCCCeEE
Q 040307 152 DIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYEN---PVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 152 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~ 227 (339)
+..+.+.+..+.+|.+.|..+.|.| |++|++-+.|++|++|++.+......+-+. ......+..+.|+| +|++|+
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~la 235 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLA 235 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeec
Confidence 9999999999999999999999995 999999999999999998775544333222 12335678999999 999998
Q ss_pred EEeeCCC---eEEEEecCCCCCceEEEecCCCCeeEEEeccC----CCC------------eEEEEeCCCcEEEEEecCC
Q 040307 228 TVGMDSN---KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL----YGR------------RLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 228 ~~~~d~~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~------------~l~~~~~dg~v~iwd~~~~ 288 (339)
+...-++ .+.|.+-.. .+.-..+.+|.+++..++|+|. ..+ .+|+|+.|++|.||.....
T Consensus 236 s~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred chhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 8643221 488887644 5566789999999999999983 111 6889999999999999776
Q ss_pred CCCCCCCCCCCcccceeeec--ccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 289 GYRSGNGGPSGDVEPELCYQ--SMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
. |+.... ....|.+++|+|||-.|++++.||+|.+++
T Consensus 315 R-------------Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 315 R-------------PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred C-------------chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 6 554332 367899999999999999999999999876
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.1e-35 Score=224.48 Aligned_cols=288 Identities=15% Similarity=0.191 Sum_probs=243.7
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc----cceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF----SADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
.|....-+-|..|||| +++|++|+ .||-|.+|++....... .....+ .-+..+|.|+.|+.|.
T Consensus 209 KFg~KSh~EcA~FSPD---gqyLvsgS----vDGFiEVWny~~GKlrKDLkYQAqd~f-MMmd~aVlci~FSRDs----- 275 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPD---GQYLVSGS----VDGFIEVWNYTTGKLRKDLKYQAQDNF-MMMDDAVLCISFSRDS----- 275 (508)
T ss_pred ecccccchhheeeCCC---CceEeecc----ccceeeeehhccchhhhhhhhhhhcce-eecccceEEEeecccH-----
Confidence 4555677889999999 99999999 89999998876543221 111122 3578999999999999
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 165 (339)
.+||+|+ | .|++|.+.++. +++.|. .|+ ..|+++.|+. |+..+++++.|.++++.-+.+|++++.+++|
T Consensus 276 EMlAsGsqDGkIKvWri~tG~--ClRrFdrAHt-----kGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQ--CLRRFDRAHT-----KGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred HHhhccCcCCcEEEEEEecch--HHHHhhhhhc-----cCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCc
Confidence 8999998 5 99999999998 888776 676 8999999996 9999999999999999999999999999999
Q ss_pred CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
++.|+...|. +|+.+++++.||+|++|+..+.++...+... ..+.+|.++..-|.+...++++...++ ++|.++.
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~q-- 423 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNMQ-- 423 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCe-EEEEecc--
Confidence 9999999999 8999999999999999999999876664443 456789999999988999999999988 9999886
Q ss_pred CCceEEEecC---CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 245 TNPVVVLSKH---EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 245 ~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
++.+.++... .+...+...+|.|+ ++.+.++|+.++.|.+..++ -.....-|...|..++-+|.
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~------------LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGK------------LERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCc------------eeeeeecccccccccccCcc
Confidence 5666666542 34677888999995 99999999999999999988 12234457778889999999
Q ss_pred CCceEEEecCCeEEEEe
Q 040307 322 ELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 322 ~~~l~~~~~d~~v~~w~ 338 (339)
...+++.+.||.+++|+
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 88777889999999996
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=215.36 Aligned_cols=296 Identities=12% Similarity=0.168 Sum_probs=234.7
Q ss_pred CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCC-----------CCCccc--ceeeEeecCCCCc
Q 040307 8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNP-----------ETSDFS--ADNRLIFDHPYTP 74 (339)
Q Consensus 8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~-----------~~~~~~--~~~~~~~~~~~~v 74 (339)
.+...-..|+.++.+.+|||| |.++|+|+ .|-.|+|.+... .+.... ......+.|.++|
T Consensus 103 yEt~ylt~HK~~cR~aafs~D---G~lvATGs----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev 175 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPD---GSLVATGS----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV 175 (430)
T ss_pred cceEEEeecccceeeeeeCCC---CcEEEccC----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc
Confidence 445555668999999999999 99999999 799999976551 011111 1112236899999
Q ss_pred eEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce-eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 75 TNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE-LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 75 ~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
+++.|+|.. .+|++|+ | +|+++|+.....+ ..+.+... .+|.++.|+| .|.+|+.|.....+++|
T Consensus 176 n~l~FHPre-----~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~------~~vrsiSfHP-sGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 176 NDLDFHPRE-----TILISGSRDNTVKLFDFSKTSAKRAFKVFQDT------EPVRSISFHP-SGEFLLVGTDHPTLRLY 243 (430)
T ss_pred cceeecchh-----heEEeccCCCeEEEEecccHHHHHHHHHhhcc------ceeeeEeecC-CCceEEEecCCCceeEE
Confidence 999999999 8999999 4 9999999875411 22233322 6899999999 99999999999999999
Q ss_pred ECCCCeeeeee---eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 152 DIDREILETQL---VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 152 d~~~~~~~~~~---~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
|+++-++...- ..|.+.|+++.++ .+++.++++.||.|++||--++++...+... +....|.+..|.. ++++++
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-H~gsevcSa~Ftk-n~kyiL 321 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-HGGSEVCSAVFTK-NGKYIL 321 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh-cCCceeeeEEEcc-CCeEEe
Confidence 99998865543 4688999999999 7999999999999999999999877766555 3456799999996 999999
Q ss_pred EEeeCCCeEEEEecCCCCCceEEEecCC-----CCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVLSKHE-----GSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
+.+.|.. +++|.+.+ +.++....+-. .--+...|+...+ +++.-. ..+.+.-||.++.. .
T Consensus 322 sSG~DS~-vkLWEi~t-~R~l~~YtGAg~tgrq~~rtqAvFNhtEd-yVl~pDEas~slcsWdaRtad-----------r 387 (430)
T KOG0640|consen 322 SSGKDST-VKLWEIST-GRMLKEYTGAGTTGRQKHRTQAVFNHTED-YVLFPDEASNSLCSWDARTAD-----------R 387 (430)
T ss_pred ecCCcce-eeeeeecC-CceEEEEecCCcccchhhhhhhhhcCccc-eEEccccccCceeeccccchh-----------h
Confidence 9999999 99999988 66676665431 1223456777775 555444 45789999999977 1
Q ss_pred cceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 302 EPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 302 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
..+...+|.+.+..+.-||.++.+++++.|-..|+|.
T Consensus 388 ~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 388 VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 2346678999999999999999999999999999994
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=204.87 Aligned_cols=272 Identities=19% Similarity=0.265 Sum_probs=225.5
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|...+.+++|+-+ |..||+|+ .|+++.+|+++........ .. .+|.+.|-.++|+|... ++++++
T Consensus 18 ~~~~~v~Sv~wn~~---g~~lasgs----~dktv~v~n~e~~r~~~~~--~~-~gh~~svdql~w~~~~~----d~~ata 83 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCD---GTKLASGS----FDKTVSVWNLERDRFRKEL--VY-RGHTDSVDQLCWDPKHP----DLFATA 83 (313)
T ss_pred hhhhcceEEEEccc---Cceeeecc----cCCceEEEEecchhhhhhh--cc-cCCCcchhhheeCCCCC----cceEEe
Confidence 35689999999999 99999999 6999999888766322222 33 68999999999999874 777777
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ | +|++||+..++ +........ ..| -+.|+| ++++++.++.|..|...|.++.+.+...+ ....+..+
T Consensus 84 s~dk~ir~wd~r~~k--~~~~i~~~~-----eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGK--CTARIETKG-----ENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred cCCceEEEEEeccCc--EEEEeeccC-----cce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 6 5 99999999988 666555433 344 578998 99999999999999999999888766654 45578889
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
.|+ ++++|+....-|.|.|......+....+ ..|.....++.|+| +|+++|+|+.|.. +.+||+.. --+++.+
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si---~AH~snCicI~f~p-~GryfA~GsADAl-vSLWD~~E-LiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI---KAHPSNCICIEFDP-DGRYFATGSADAL-VSLWDVDE-LICERCI 227 (313)
T ss_pred eecCCCCEEEEecCCceEEEEecccccccccc---ccCCcceEEEEECC-CCceEeeccccce-eeccChhH-hhhheee
Confidence 999 7888888888899999988876644443 33678899999999 9999999999998 99999986 5567888
Q ss_pred ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
..+.-+|+.+.||-+| ++||++++|..|-|=+++++. .+....+.++...|+|+|....|+-++.
T Consensus 228 sRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd-------------~~~eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD-------------RVWEIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred ccccCceEEEEeccCc-ceeeccCccceEEeEecccCC-------------eEEEeeccCCceeEEecCCCceeeEEec
Confidence 8899999999999999 699999999999999999988 5667788999999999999886664553
No 55
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-33 Score=233.06 Aligned_cols=270 Identities=17% Similarity=0.271 Sum_probs=220.9
Q ss_pred EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEE
Q 040307 23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRL 100 (339)
Q Consensus 23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~i 100 (339)
++|+. .+.||+|. ...|++|+ ...+.... ...++ ...|+++.|+++| .+||+|.. .|.|
T Consensus 183 ldWss----~n~laVal-----g~~vylW~--~~s~~v~~--l~~~~-~~~vtSv~ws~~G-----~~LavG~~~g~v~i 243 (484)
T KOG0305|consen 183 LDWSS----ANVLAVAL-----GQSVYLWS--ASSGSVTE--LCSFG-EELVTSVKWSPDG-----SHLAVGTSDGTVQI 243 (484)
T ss_pred hhccc----CCeEEEEe-----cceEEEEe--cCCCceEE--eEecC-CCceEEEEECCCC-----CEEEEeecCCeEEE
Confidence 46773 56888888 68999955 44444333 22223 8899999999999 89999973 9999
Q ss_pred EeecCCcceeEEEeec-CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee-eeccCCceeEEEec-CC
Q 040307 101 WEIHDDRTELKSLLNS-NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ-LVAHDREVYDISWG-GF 177 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~-~~ 177 (339)
||..+.+ ....+.+ |. ..|.+++|+ ...+.+|+.++.|..+|++..+.... +.+|...|..++|+ ++
T Consensus 244 wD~~~~k--~~~~~~~~h~-----~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 244 WDVKEQK--KTRTLRGSHA-----SRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG 313 (484)
T ss_pred Eehhhcc--ccccccCCcC-----ceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC
Confidence 9999887 6777777 76 899999996 58899999999999999998875554 88999999999999 89
Q ss_pred cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCCCCCceEEEecCC
Q 040307 178 NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRFPTNPVVVLSKHE 255 (339)
Q Consensus 178 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~~~~~ 255 (339)
.++|+|+.|+.+.|||......... +.. |...|..++|+|....+||+|+ .|+. |++||... +..+..+.. .
T Consensus 314 ~~lASGgnDN~~~Iwd~~~~~p~~~-~~~--H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~-g~~i~~vdt-g 387 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLSPEPKFT-FTE--HTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNT-GARIDSVDT-G 387 (484)
T ss_pred CeeccCCCccceEeccCCCccccEE-Eec--cceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCC-CcEeccccc-C
Confidence 9999999999999999966654333 333 7899999999999999999964 5666 99999987 555665554 6
Q ss_pred CCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeE
Q 040307 256 GSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKL 334 (339)
Q Consensus 256 ~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v 334 (339)
..|.++.|++....++.+-+ .++.|.||++...+ ......+|...|..++|+|||..+++++.|.++
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~------------~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK------------LVAELLGHTSRVLYLALSPDGETIVTGAADETL 455 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc------------eeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence 78999999999843444433 67799999999977 344667899999999999999999999999999
Q ss_pred EEEeC
Q 040307 335 QLLKV 339 (339)
Q Consensus 335 ~~w~v 339 (339)
++|++
T Consensus 456 rfw~~ 460 (484)
T KOG0305|consen 456 RFWNL 460 (484)
T ss_pred Eeccc
Confidence 99985
No 56
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=229.37 Aligned_cols=281 Identities=21% Similarity=0.302 Sum_probs=229.0
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.+.+..+.|-++ ...|++|+ .|..|++|+...++.+... .+ .+..+.|+.+.|.+++. .+||++
T Consensus 173 ~h~gev~~v~~l~~---sdtlatgg----~Dr~Ik~W~v~~~k~~~~~--tL-aGs~g~it~~d~d~~~~----~~iAas 238 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRN---SDTLATGG----SDRIIKLWNVLGEKSELIS--TL-AGSLGNITSIDFDSDNK----HVIAAS 238 (459)
T ss_pred ccccccceeEEccC---cchhhhcc----hhhhhhhhhcccchhhhhh--hh-hccCCCcceeeecCCCc----eEEeec
Confidence 46789999999999 89999999 7999999877766644443 44 56778899999999994 555556
Q ss_pred CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 95 GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 95 ~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
.| .+++|+++..+ ...++.+|+ ..|+++.|.. ....+++|+.|.+|++||+....+.+++. ....+.+|.
T Consensus 239 ~d~~~r~Wnvd~~r--~~~TLsGHt-----dkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~ 309 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLR--LRHTLSGHT-----DKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIV 309 (459)
T ss_pred CCCceeeeeccchh--hhhhhcccc-----cceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceE
Confidence 67 99999999987 888999999 9999999985 55569999999999999999988887764 344566666
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307 174 WGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK 253 (339)
Q Consensus 174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~ 253 (339)
.+ ...+++|..|++|++||.++......+... +.|+++..++ ++..+++++.|.. +.+.|++. ......+.+
T Consensus 310 ~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~-~g~~lLsssRDdt-l~viDlRt-~eI~~~~sA 381 (459)
T KOG0288|consen 310 CS-ISDVISGHFDKKVRFWDIRSADKTRSVPLG----GRVTSLDLSM-DGLELLSSSRDDT-LKVIDLRT-KEIRQTFSA 381 (459)
T ss_pred ec-ceeeeecccccceEEEeccCCceeeEeecC----cceeeEeecc-CCeEEeeecCCCc-eeeeeccc-ccEEEEeec
Confidence 65 678899999999999999998855554433 5999999998 8888888899999 99999997 444444433
Q ss_pred C----CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc-cceeEEEEecCCCCceEEE
Q 040307 254 H----EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS-MAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 254 ~----~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l~~~ 328 (339)
. ....+.+.|||++ .++++||.||.|+||++.+++ ++......+ ...|++++|+|.|.+++++
T Consensus 382 ~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgK-----------lE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGK-----------LEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred cccccccccceeEECCCC-ceeeeccCCCcEEEEEccCce-----------EEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 2 2248899999999 599999999999999999988 222222223 3379999999999999999
Q ss_pred ecCCeEEEEe
Q 040307 329 AFVNKLQLLK 338 (339)
Q Consensus 329 ~~d~~v~~w~ 338 (339)
+.++.+.+|.
T Consensus 450 dk~~~v~lW~ 459 (459)
T KOG0288|consen 450 DKQKAVTLWT 459 (459)
T ss_pred cCCcceEecC
Confidence 9999999994
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-33 Score=233.74 Aligned_cols=241 Identities=15% Similarity=0.228 Sum_probs=217.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEe-CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATS-GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..+..+|.++.|+|.. ..++++ -. .|.||+.++.. .+..+.-.. .||++..|-+ ..+.+++|+.|
T Consensus 10 ~~rSdRVKsVd~HPte-----Pw~la~LynG~V~IWnyetqt--mVksfeV~~-----~PvRa~kfia-RknWiv~GsDD 76 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTE-----PWILAALYNGDVQIWNYETQT--MVKSFEVSE-----VPVRAAKFIA-RKNWIVTGSDD 76 (794)
T ss_pred hccCCceeeeecCCCC-----ceEEEeeecCeeEEEecccce--eeeeeeecc-----cchhhheeee-ccceEEEecCC
Confidence 4588999999999998 555554 34 99999999987 777887766 8999999997 88999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
..|+||+.++++.+..+.+|.+.|++++.+| .-++++++.|-.|++||-...-...+.+++ |...|.+++|+|.+.+
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG--H~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG--HEHYVMQVAFNPKDPN 154 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC--cceEEEEEEecCCCcc
Confidence 9999999999999999999999999999994 679999999999999999988777888887 7889999999999999
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCC-CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG-RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP 303 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 303 (339)
.+|+++.|++ |++|.+.+ ..|..++.+|...|+++.+-+.|+ -+|++|+.|..++|||.++.. +
T Consensus 155 tFaS~sLDrT-VKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-------------C 219 (794)
T KOG0276|consen 155 TFASASLDRT-VKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-------------C 219 (794)
T ss_pred ceeeeecccc-EEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-------------H
Confidence 9999999999 99999987 668899999999999999998652 299999999999999999987 4
Q ss_pred e-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 304 E-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 304 ~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
+ ...+|...|..+.|+|.-+.+++++.||++|||+
T Consensus 220 V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 220 VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred HHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 4 5668999999999999999899999999999996
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2e-32 Score=254.59 Aligned_cols=246 Identities=19% Similarity=0.261 Sum_probs=202.5
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc------ceeEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR------TELKSLLNSNKTSEFSSAITSFDWAGFDTRRV 139 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 139 (339)
..|...|.+++|+|++ ++||+|+ | .|+||++.... ..+...+.++ ..+.+++|+|..+.+|
T Consensus 480 ~~~~~~V~~i~fs~dg-----~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 480 LNSSNLVCAIGFDRDG-----EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR------SKLSGICWNSYIKSQV 548 (793)
T ss_pred cCCCCcEEEEEECCCC-----CEEEEEeCCCEEEEEECCcccccccccccceEEeccc------CceeeEEeccCCCCEE
Confidence 4589999999999999 8999988 4 99999976421 0122223322 5789999998678899
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEE
Q 040307 140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLE 217 (339)
Q Consensus 140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 217 (339)
++++.||.|++||+.+++.+..+.+|...|++++|+ ++.+|++|+.|+.|++||+++......+. . ...+.++.
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~---~~~v~~v~ 624 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-T---KANICCVQ 624 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c---CCCeEEEE
Confidence 999999999999999999899999999999999998 47899999999999999999877544432 2 25789999
Q ss_pred EecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307 218 WNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP 297 (339)
Q Consensus 218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 297 (339)
|++.++.+|++|+.|+. |++||++....++..+.+|...|.++.|. ++ ..|++++.|+.|+|||+...... .
T Consensus 625 ~~~~~g~~latgs~dg~-I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~-~---- 696 (793)
T PLN00181 625 FPSESGRSLAFGSADHK-VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG-I---- 696 (793)
T ss_pred EeCCCCCEEEEEeCCCe-EEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc-c----
Confidence 97768999999999999 99999987555778888999999999997 55 58999999999999999754200 0
Q ss_pred CCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 298 SGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 298 ~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
...++ ...+|...+..++|+|++.++++++.|+.|++|+
T Consensus 697 --~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 697 --NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred --CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 01123 4557888999999999999889999999999997
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.5e-33 Score=216.71 Aligned_cols=260 Identities=19% Similarity=0.310 Sum_probs=217.5
Q ss_pred CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
+++....+. |.++|.+++|.-..+....|++++ .|.++++|.|+............ .+|...|.+++..+++
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas----~Dqtl~Lw~~~~~~~~~~~~~~~-~GHk~~V~sVsv~~sg-- 205 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS----MDQTLRLWKWNVGENKVKALKVC-RGHKRSVDSVSVDSSG-- 205 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEec----CCceEEEEEecCchhhhhHHhHh-cccccceeEEEecCCC--
Confidence 455555554 789999898876633244699999 79999999999877655542222 4999999999999999
Q ss_pred CCCCeEEEeC-C-cEEEEeecCC-----------------------cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307 86 LNPDIVATSG-D-SLRLWEIHDD-----------------------RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA 140 (339)
Q Consensus 86 ~~~~~la~~~-~-~i~iw~~~~~-----------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 140 (339)
..+++|+ | .|.||+.... ...++.++.+|+ .+|.++.|++ ...++
T Consensus 206 ---tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-----~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 206 ---TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT-----EPVSSVVWSD--ATVIY 275 (423)
T ss_pred ---CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc-----cceeeEEEcC--CCceE
Confidence 8899988 7 9999993321 124667778888 9999999984 78899
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307 141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (339)
+++.|.+|+.||+.++..+..+.. ...++|+.++ ..++|++|+.|..|++||.|.+.-.........|+..|.++.|+
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred eecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 999999999999999998888864 5678999999 68899999999999999999987544444445588999999999
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
|.+...|++++.|+. +++||+|....|+..+.+|...|.++.|+..+ .+++|+.|.+|+|+....
T Consensus 355 p~~~~~~~S~S~D~t-~klWDvRS~k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNT-VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CCCceEEEEEecCCe-EEEEEeccCCCcceeeccCCceEEEEeccCCc--eEEeccCcceEEEecccc
Confidence 988899999999999 99999999777999999999999999999764 899999999999997654
No 60
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-34 Score=221.13 Aligned_cols=241 Identities=20% Similarity=0.259 Sum_probs=214.8
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|..+|+.+-|+|+- .+++++++ +|++||..+++ +...+++|. ..+.++.|+. .|+++++++.|
T Consensus 105 ~g~r~~vt~v~~hp~~-----~~v~~as~d~tikv~D~~tg~--~e~~LrGHt-----~sv~di~~~a-~Gk~l~tcSsD 171 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSE-----ALVVSASEDATIKVFDTETGE--LERSLRGHT-----DSVFDISFDA-SGKYLATCSSD 171 (406)
T ss_pred hccccceeeeeeccCc-----eEEEEecCCceEEEEEccchh--hhhhhhccc-----cceeEEEEec-CccEEEecCCc
Confidence 5788999999999998 78888874 99999999998 688999999 8899999996 89999999999
Q ss_pred CeEEEEECCC-CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307 146 TTCVIWDIDR-EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 146 ~~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
-.+++||..+ .++++.+.+|...|.++.|- -++++++++.|.+|+.||+.++-....+. .|...+..++.+. +|
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~---~h~ewvr~v~v~~-DG 247 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP---GHSEWVRMVRVNQ-DG 247 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc---CchHhEEEEEecC-Ce
Confidence 9999999976 55777888999999999999 58999999999999999999998555433 3667999999995 99
Q ss_pred CeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCC--------------CCeEEEEeCCCcEEEEEecCCC
Q 040307 224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY--------------GRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~--------------~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.++|+++.|.+ +++|-+.+ .++...+..|+.+|-+++|.|.. ..++++++.|++|++||+.++.
T Consensus 248 ti~As~s~dqt-l~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 248 TIIASCSNDQT-LRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred eEEEecCCCce-EEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 99999999999 99999887 66778899999999999998752 1489999999999999999988
Q ss_pred CCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 290 YRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
-.+.+.+|...|..++|+|.|+||+++.+|++|++|++
T Consensus 326 ------------cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 326 ------------CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred ------------EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 33467799999999999999999999999999999985
No 61
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=237.35 Aligned_cols=242 Identities=19% Similarity=0.244 Sum_probs=202.2
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT 146 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 146 (339)
.+...|.++.|++++ +.+++++ + .+++|+....+......+.+|. ..|.+++|+| +++++++++.|+
T Consensus 157 ~~~~sv~~~~fs~~g-----~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~-----~~v~~~~fs~-d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDG-----RALAAASSDGLIRIWKLEGIKSNLLRELSGHT-----RGVSDVAFSP-DGSYLLSGSDDK 225 (456)
T ss_pred cccCceEEEEEcCCC-----CeEEEccCCCcEEEeecccccchhhccccccc-----cceeeeEECC-CCcEEEEecCCc
Confidence 347889999999999 7788875 5 9999999555422444556676 8999999998 999999999999
Q ss_pred eEEEEEC-CCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 147 TCVIWDI-DREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 147 ~v~i~d~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
+|+|||+ ..+..++++.+|...|++++|+ .++++++|+.|++|++||+++++.... ... |...|.+++|++ +++
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~-l~~--hs~~is~~~f~~-d~~ 301 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK-LKG--HSDGISGLAFSP-DGN 301 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe-eec--cCCceEEEEECC-CCC
Confidence 9999999 5558899999999999999999 689999999999999999999664443 333 788999999998 999
Q ss_pred eEEEEeeCCCeEEEEecCCCCC-ceEEEecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 225 FMATVGMDSNKVVVLDIRFPTN-PVVVLSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~-~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
+|++++.|+. |++||+.+... +...+..+... ++.+.|+|++ .+++++..|+.+++||+....
T Consensus 302 ~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~------------ 367 (456)
T KOG0266|consen 302 LLVSASYDGT-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK------------ 367 (456)
T ss_pred EEEEcCCCcc-EEEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc------------
Confidence 9999999999 99999998432 35666666555 9999999999 699999999999999999877
Q ss_pred cceeeecccc---eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 302 EPELCYQSMA---EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 302 ~~~~~~~~~~---~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+.....|.. .+.+...++.++++++++.|+.|.+|++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 2334444433 4566677889998999999999999985
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-33 Score=208.26 Aligned_cols=292 Identities=14% Similarity=0.176 Sum_probs=227.4
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
++.-..|+.|++-+.|+.+ |.+|.+++ .|....+|- ..++..+- .+ .+|.+.|+|+...-+. +
T Consensus 3 pi~l~GHERplTqiKyN~e---GDLlFsca----KD~~~~vw~-s~nGerlG---ty-~GHtGavW~~Did~~s-----~ 65 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNRE---GDLLFSCA----KDSTPTVWY-SLNGERLG---TY-DGHTGAVWCCDIDWDS-----K 65 (327)
T ss_pred ccccccCccccceEEecCC---CcEEEEec----CCCCceEEE-ecCCceee---ee-cCCCceEEEEEecCCc-----c
Confidence 3555678999999999999 99999999 899999963 22333332 33 6999999999999998 8
Q ss_pred eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-----CCeEEEEECC-------C
Q 040307 90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-----DTTCVIWDID-------R 155 (339)
Q Consensus 90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~v~i~d~~-------~ 155 (339)
.+++|+ | ++++||+++++ .+..++.. .+|..+.|++ ++++++.+.. .+.|.++|++ .
T Consensus 66 ~liTGSAD~t~kLWDv~tGk--~la~~k~~------~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s 136 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGK--QLATWKTN------SPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS 136 (327)
T ss_pred eeeeccccceeEEEEcCCCc--EEEEeecC------CeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence 999988 5 99999999998 77777754 6899999997 8888887654 4689999998 3
Q ss_pred CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307 156 EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN 234 (339)
Q Consensus 156 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 234 (339)
.++...+..+.+.++.+-|. -++.|++|..||.|..||++++......... |...|+.+.++| +..++++++.|.+
T Consensus 137 ~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~--h~~~Ind~q~s~-d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 137 EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE--HSSKINDLQFSR-DRTYFITGSKDTT 213 (327)
T ss_pred cCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh--hccccccccccC-CcceEEecccCcc
Confidence 45677788888999999999 5899999999999999999998755544444 778999999998 9999999999999
Q ss_pred eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC------cccceeeec
Q 040307 235 KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG------DVEPELCYQ 308 (339)
Q Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~ 308 (339)
-++||+++ -..++++.. ..+|++.+++|..+.+++.|+.+. . |+.+...+... .... ..+.-...+
T Consensus 214 -akl~D~~t-l~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA-~---dVTTT~~r~GK-FEArFyh~i~eEEigrvkG 285 (327)
T KOG0643|consen 214 -AKLVDVRT-LEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEA-M---DVTTTSTRAGK-FEARFYHLIFEEEIGRVKG 285 (327)
T ss_pred -ceeeeccc-eeeEEEeee-cccccceecccccceEEecCCcee-e---eeeeecccccc-hhhhHHHHHHHHHhccccc
Confidence 99999998 445666664 679999999998864444444332 1 22221100000 0000 001225568
Q ss_pred ccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 309 SMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
|-++|++++|||+|..+.+++.||.||+..
T Consensus 286 HFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 286 HFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cccCcceeEECCCCcccccCCCCceEEEEE
Confidence 999999999999999888999999999864
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=224.58 Aligned_cols=229 Identities=13% Similarity=0.257 Sum_probs=199.1
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
....|+|+.+.. ..+++|. | +|+|||.++-. +...+.+|+ +.|.|+.|. .+.|++|+.|.+
T Consensus 196 ~skgVYClQYDD-------~kiVSGlrDnTikiWD~n~~~--c~~~L~GHt-----GSVLCLqyd---~rviisGSSDsT 258 (499)
T KOG0281|consen 196 NSKGVYCLQYDD-------EKIVSGLRDNTIKIWDKNSLE--CLKILTGHT-----GSVLCLQYD---ERVIVSGSSDST 258 (499)
T ss_pred cCCceEEEEecc-------hhhhcccccCceEEeccccHH--HHHhhhcCC-----CcEEeeecc---ceEEEecCCCce
Confidence 456799999854 4677887 5 99999998876 888999999 999999985 479999999999
Q ss_pred EEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 148 CVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
|++||.++++++.++-.|...|..+.|+ ..++++++.|.++.+||+..+..........+|...|..+.|+ .++++
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIV 334 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIV 334 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEE
Confidence 9999999999999999999999999998 6799999999999999999887443322223478899999995 46999
Q ss_pred EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-ee
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LC 306 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~ 306 (339)
+++.|.+ |++|++.+ ...+.++.+|...|.++.+. + +++++|+.|.+|++||+..+. .+ ..
T Consensus 335 sASgDRT-ikvW~~st-~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~-------------cLRvL 396 (499)
T KOG0281|consen 335 SASGDRT-IKVWSTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA-------------CLRVL 396 (499)
T ss_pred EecCCce-EEEEeccc-eeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH-------------HHHHH
Confidence 9999999 99999988 77899999999999888864 4 699999999999999999988 44 66
Q ss_pred ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 307 YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 307 ~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+|..-|.++.|.. +.+++++.||+|++|++
T Consensus 397 eGHEeLvRciRFd~--krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 397 EGHEELVRCIRFDN--KRIVSGAYDGKIKVWDL 427 (499)
T ss_pred hchHHhhhheeecC--ceeeeccccceEEEEec
Confidence 78999999999954 46999999999999985
No 64
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.4e-31 Score=228.02 Aligned_cols=226 Identities=15% Similarity=0.239 Sum_probs=178.3
Q ss_pred ecCCCCceEEEEcC-CCCCCCCCeEEEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307 68 FDHPYTPTNIAFFP-SEETLNPDIVATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRV 139 (339)
Q Consensus 68 ~~~~~~v~~l~~~~-~~~~~~~~~la~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 139 (339)
.+|.+.|.+++|+| ++ .+|++|+ | +|++|++.+.. ..++..+.+|. ..|.+++|+|..+++|
T Consensus 72 ~GH~~~V~~v~fsP~d~-----~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDP-----QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVL 141 (493)
T ss_pred eCCCCCEEEEEEcCCCC-----CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEE
Confidence 68999999999999 66 7888888 4 99999997653 13566788887 8999999998445799
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC-CeEEEE
Q 040307 140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC-PLLRLE 217 (339)
Q Consensus 140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~ 217 (339)
++++.|+.|+|||+++++.+..+..|...|.+++|+ ++++|++++.|+.|++||+++++....+. . |.. ....+.
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~--H~~~~~~~~~ 218 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-A--HASAKSQRCL 218 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-c--CCCCcceEEE
Confidence 999999999999999999888898999999999999 79999999999999999999987544332 2 333 345788
Q ss_pred EecCCCCeEEEEe----eCCCeEEEEecCCCCCceEEEecCC-CCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCC
Q 040307 218 WNKADPRFMATVG----MDSNKVVVLDIRFPTNPVVVLSKHE-GSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYR 291 (339)
Q Consensus 218 ~~p~~~~~l~~~~----~d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~ 291 (339)
|.| ++..+++++ .|+. |++||++....++.....+. ..+....|++++ .+|++++ .|+.|++||+..+.
T Consensus 219 w~~-~~~~ivt~G~s~s~Dr~-VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~-- 293 (493)
T PTZ00421 219 WAK-RKDLIITLGCSKSQQRQ-IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNER-- 293 (493)
T ss_pred EcC-CCCeEEEEecCCCCCCe-EEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCc--
Confidence 988 555565544 3566 99999998666666554433 356667899998 5777776 69999999999876
Q ss_pred CCCCCCCCcccce--eeecccceeEEEEecCCC
Q 040307 292 SGNGGPSGDVEPE--LCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 292 ~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~ 322 (339)
+. ..+.+..++..++|.|..
T Consensus 294 -----------~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 294 -----------LTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred -----------eEEEeeccCCCCCcceEecccc
Confidence 33 233455677888888863
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-32 Score=201.43 Aligned_cols=236 Identities=15% Similarity=0.141 Sum_probs=200.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..++++|..+.|+-+| ++.++++ | +|++|+...+. +++++.+|. ..|..++.+. ++..|++|+.|
T Consensus 14 ~~~qgaV~avryN~dG-----nY~ltcGsdrtvrLWNp~rg~--liktYsghG-----~EVlD~~~s~-Dnskf~s~GgD 80 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDG-----NYCLTCGSDRTVRLWNPLRGA--LIKTYSGHG-----HEVLDAALSS-DNSKFASCGGD 80 (307)
T ss_pred cccccceEEEEEccCC-----CEEEEcCCCceEEeecccccc--eeeeecCCC-----ceeeeccccc-cccccccCCCC
Confidence 5789999999999999 7777666 6 99999999887 999999998 8999999996 89999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
..|.+||+++|+..+.+.+|.+.|+.++|+ +...+++|+.|.++++||.|+..... ++... ....|.++.. .+
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v---~~ 155 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDV---AE 155 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEe---cc
Confidence 999999999999999999999999999999 78999999999999999999886332 22222 4568888887 45
Q ss_pred CeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307 224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP 303 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 303 (339)
..|++|+.||+ ++.||+|. +...... ...+|+++.|++++ +..+.++.|+++++.|-++++ .
T Consensus 156 heIvaGS~DGt-vRtydiR~-G~l~sDy--~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk-------------l 217 (307)
T KOG0316|consen 156 HEIVAGSVDGT-VRTYDIRK-GTLSSDY--FGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK-------------L 217 (307)
T ss_pred cEEEeeccCCc-EEEEEeec-ceeehhh--cCCcceeEEecCCC-CEEEEeeccceeeecccchhH-------------H
Confidence 88999999999 99999998 4333333 34589999999999 599999999999999999988 3
Q ss_pred e-eeecccc--eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 304 E-LCYQSMA--EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 304 ~-~~~~~~~--~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+ ...+|.. --...++......+++++.||.|.+|++
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 3 3345543 3455677777777889999999999986
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-33 Score=239.16 Aligned_cols=241 Identities=15% Similarity=0.258 Sum_probs=213.1
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC--CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG--DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
.+.+|..++|+|.. ..+.++- +.|++||.+-+. ++..|..|. ++|.+++|+| .+.+|++|+.|-.
T Consensus 8 kSsRvKglsFHP~r-----PwILtslHsG~IQlWDYRM~t--li~rFdeHd-----GpVRgv~FH~-~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKR-----PWILTSLHSGVIQLWDYRMGT--LIDRFDEHD-----GPVRGVDFHP-TQPLFVSGGDDYK 74 (1202)
T ss_pred ccccccceecCCCC-----CEEEEeecCceeeeehhhhhh--HHhhhhccC-----CccceeeecC-CCCeEEecCCccE
Confidence 45689999999998 6777774 499999999887 888899988 9999999998 9999999999999
Q ss_pred EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307 148 CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 226 (339)
|++|+..+.+++.++.+|-+.|..+.|+ .--+|+++|.|.+|+||+..+.++... ..+ |...|.|..|+| ...++
T Consensus 75 IkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav-ltG--HnHYVMcAqFhp-tEDlI 150 (1202)
T KOG0292|consen 75 IKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV-LTG--HNHYVMCAQFHP-TEDLI 150 (1202)
T ss_pred EEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE-Eec--CceEEEeeccCC-ccceE
Confidence 9999999999999999999999999999 677999999999999999999885554 344 677999999999 88999
Q ss_pred EEEeeCCCeEEEEecCCCC----------------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307 227 ATVGMDSNKVVVLDIRFPT----------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS 278 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 278 (339)
++++.|.+ |++||+.... -....+.+|...|+-++|+|.-+ ++++|+.|.
T Consensus 151 VSaSLDQT-VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDR 228 (1202)
T KOG0292|consen 151 VSASLDQT-VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDR 228 (1202)
T ss_pred EEecccce-EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcc
Confidence 99999999 9999985321 01235678999999999999996 999999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.|++|.+...+ .++.-...+|...|.++-|+|....+++.+.|++||+|++
T Consensus 229 qVKlWrmnetK----------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 229 QVKLWRMNETK----------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eeeEEEecccc----------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 99999998877 4445577899999999999999888889999999999986
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=234.85 Aligned_cols=289 Identities=12% Similarity=0.079 Sum_probs=205.9
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccccee-----eEeecCCCCceEEEEcCCCCCCCCC
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN-----RLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
.|.+.|.++.||+| |+|||+|+ +|+.|+||.+-.......... .+.......+..+.-++........
T Consensus 265 ah~gaIw~mKFS~D---GKyLAsaG----eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHD---GKYLASAG----EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred ccCCcEEEEEeCCC---CceeeecC----CCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 47789999999999 99999999 899999998765221100000 0000111111111111100000001
Q ss_pred eEEEeCC--cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307 90 IVATSGD--SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 90 ~la~~~~--~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 165 (339)
..-.+.. . .+...... ..+++..+.+|. +.|.++.|+ .+++|++++.|.+|++|++...+++..|. |
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt-----~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-H 408 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHT-----ADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-H 408 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccc-----hhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-c
Confidence 1111221 2 12221111 123778888998 999999999 57899999999999999999999999995 9
Q ss_pred CCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 166 DREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 166 ~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
.+-|+|++|+ |.++|++|+-|+.|+||++...+...- ... ..-|++++|.| +|++.++|+.+|. +++|++..
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl---~~lITAvcy~P-dGk~avIGt~~G~-C~fY~t~~ 482 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDL---RDLITAVCYSP-DGKGAVIGTFNGY-CRFYDTEG 482 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhh---hhhheeEEecc-CCceEEEEEeccE-EEEEEccC
Confidence 9999999999 799999999999999999988763222 222 36899999999 7999999999999 99999986
Q ss_pred CCCceEEEe--cC------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec--ccce
Q 040307 244 PTNPVVVLS--KH------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ--SMAE 312 (339)
Q Consensus 244 ~~~~~~~~~--~~------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~ 312 (339)
.+...... .| ...|+++.|.|..+..+++.+.|..|+|||.+... ++ ...+ ....
T Consensus 483 -lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-------------lv~KfKG~~n~~S 548 (712)
T KOG0283|consen 483 -LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-------------LVHKFKGFRNTSS 548 (712)
T ss_pred -CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-------------hhhhhcccccCCc
Confidence 33332221 11 22799999999876678888999999999997766 22 2222 2333
Q ss_pred eEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 313 INVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 313 i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
=....|+.||+++|+++.|..|++|++
T Consensus 549 Q~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 549 QISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ceeeeEccCCCEEEEeecCceEEEEeC
Confidence 457889999999999999999999984
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.6e-31 Score=215.87 Aligned_cols=239 Identities=20% Similarity=0.313 Sum_probs=202.8
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|..+|.+++|+|++ ++|++++ + .+++|++.+.+ ....+..|. ..+..+.|+| ++++|++++.+
T Consensus 6 ~~h~~~i~~~~~~~~~-----~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~~ 72 (289)
T cd00200 6 KGHTGGVTCVAFSPDG-----KLLATGSGDGTIKVWDLETGE--LLRTLKGHT-----GPVRDVAASA-DGTYLASGSSD 72 (289)
T ss_pred cccCCCEEEEEEcCCC-----CEEEEeecCcEEEEEEeeCCC--cEEEEecCC-----cceeEEEECC-CCCEEEEEcCC
Confidence 4799999999999998 7888887 5 99999999876 666677776 7889999998 88899999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
|.|++||+++++....+..|...+.++.|+ ++.++++++.++.|++||+++.+....+. .+...+.+++|+| ++.
T Consensus 73 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~ 148 (289)
T cd00200 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSP-DGT 148 (289)
T ss_pred CeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcC-cCC
Confidence 999999999888888888898899999999 56778888779999999999766443332 3567899999998 688
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
++++++.++. +++||++. .+++..+..|...+.++.|+|++ ..+++++.|+.|++||+.... +.
T Consensus 149 ~l~~~~~~~~-i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~-------------~~ 212 (289)
T cd00200 149 FVASSSQDGT-IKLWDLRT-GKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK-------------CL 212 (289)
T ss_pred EEEEEcCCCc-EEEEEccc-cccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc-------------ee
Confidence 8888887888 99999986 56678888888899999999998 588888889999999998866 34
Q ss_pred eee-cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 LCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 ~~~-~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
... .|...|.+++|+|++..+++++.|+.+++|++
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 333 67889999999999765556666999999985
No 69
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-32 Score=223.42 Aligned_cols=290 Identities=16% Similarity=0.184 Sum_probs=245.5
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
+.+.++.|..-|.++.+|.. .+++.+|+ .|.|+||++.....+......-.......|.++..+||+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~---trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg----- 477 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNP---TRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG----- 477 (705)
T ss_pred HhhhhhccCcEEEEEEecCC---cceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-----
Confidence 45677888889999999999 89999999 899999999866554433111113456779999999999
Q ss_pred CeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 89 DIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 89 ~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
+-|++|+. ++.|||+..........+.... ..+.+++.+| |.+..+++..||.|.|||+.+...++.+++|.
T Consensus 478 rtLivGGeastlsiWDLAapTprikaeltssa-----paCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred ceEEeccccceeeeeeccCCCcchhhhcCCcc-----hhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 88888886 9999999987744545554433 5788999998 99999999999999999999999999999999
Q ss_pred CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
+.+.||..+ ++..|-+|+-|.+|+.||+|+++.+.... -...|.++-.+| ++..+++|-.++. +.|......
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP-~~dWlavGMens~-vevlh~skp- 624 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCP-TGDWLAVGMENSN-VEVLHTSKP- 624 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCC-CccceeeecccCc-EEEEecCCc-
Confidence 999999999 89999999999999999999988554422 236899999999 9999999999988 888887653
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW 325 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 325 (339)
....+..|...|.++.|.+.| +++++.+.|+.+..|.+..+. .+........|.+...|-+.+++
T Consensus 625 -~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa-------------siFqskE~SsVlsCDIS~ddkyI 689 (705)
T KOG0639|consen 625 -EKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA-------------SIFQSKESSSVLSCDISFDDKYI 689 (705)
T ss_pred -cceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc-------------ceeeccccCcceeeeeccCceEE
Confidence 356778899999999999999 799999999999999998887 45555677889999999999999
Q ss_pred EEEecCCeEEEEeC
Q 040307 326 IAIAFVNKLQLLKV 339 (339)
Q Consensus 326 ~~~~~d~~v~~w~v 339 (339)
++++.|....||.|
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999999888875
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=227.28 Aligned_cols=278 Identities=18% Similarity=0.208 Sum_probs=237.6
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
...|...|.++++|.+ ...+++|+ .+.++||+.+ +..... + .. .+.+.+..|.|.+ ++++
T Consensus 369 ~~GHR~dVRsl~vS~d---~~~~~Sga-----~~SikiWn~~--t~kciR--T--i~-~~y~l~~~Fvpgd-----~~Iv 428 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSD---SILLASGA-----GESIKIWNRD--TLKCIR--T--IT-CGYILASKFVPGD-----RYIV 428 (888)
T ss_pred eccchhheeEEEeecC---ceeeeecC-----CCcEEEEEcc--CcceeE--E--ec-cccEEEEEecCCC-----ceEE
Confidence 3447789999999999 88888888 7999996654 444443 2 22 3378999999999 8999
Q ss_pred EeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-----Cee--e----
Q 040307 93 TSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR-----EIL--E---- 159 (339)
Q Consensus 93 ~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-----~~~--~---- 159 (339)
.|.+ .+.+||+.... .+.+.+.|. ++|..++.+| ++..+++|+.|.+|++||..- +.. +
T Consensus 429 ~G~k~Gel~vfdlaS~~--l~Eti~AHd-----gaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASAS--LVETIRAHD-----GAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred EeccCCceEEEEeehhh--hhhhhhccc-----cceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 9985 99999999887 777888888 9999999998 999999999999999999731 111 1
Q ss_pred --eeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeE
Q 040307 160 --TQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKV 236 (339)
Q Consensus 160 --~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i 236 (339)
+++ .-.+.|.|++++ ++.+|+.+=-|.++++|-+.+.+....++ +|.-||.++..+| +++++++|+.|.+ |
T Consensus 501 ~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY---GHkLPV~smDIS~-DSklivTgSADKn-V 574 (888)
T KOG0306|consen 501 HTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY---GHKLPVLSMDISP-DSKLIVTGSADKN-V 574 (888)
T ss_pred cceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec---ccccceeEEeccC-CcCeEEeccCCCc-e
Confidence 122 245789999999 79999999999999999999987544444 3789999999998 9999999999999 9
Q ss_pred EEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEE
Q 040307 237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVV 316 (339)
Q Consensus 237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 316 (339)
++|-+.- +.+-+++.+|...|.++.|-|.. .++.+++.|+.|+-||-.... ..+...+|...|+++
T Consensus 575 KiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe------------~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 575 KIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE------------EIQKLDGHHSEVWCL 640 (888)
T ss_pred EEecccc-chhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh------------hheeeccchheeeee
Confidence 9999987 67788999999999999999987 799999999999999999887 455777899999999
Q ss_pred EecCCCCceEEEecCCeEEEEe
Q 040307 317 RWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 317 ~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
+.+|+|.++++++.|.+||+|.
T Consensus 641 av~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999999996
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-30 Score=197.37 Aligned_cols=278 Identities=15% Similarity=0.206 Sum_probs=217.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
....|.++.|+++ |.+|++++ .|..++||+.... .... .+ ..+...|..+.|..... .++.+..
T Consensus 13 ~~~~i~sl~fs~~---G~~litss----~dDsl~LYd~~~g--~~~~--ti-~skkyG~~~~~Fth~~~----~~i~sSt 76 (311)
T KOG1446|consen 13 TNGKINSLDFSDD---GLLLITSS----EDDSLRLYDSLSG--KQVK--TI-NSKKYGVDLACFTHHSN----TVIHSST 76 (311)
T ss_pred CCCceeEEEecCC---CCEEEEec----CCCeEEEEEcCCC--ceee--Ee-ecccccccEEEEecCCc----eEEEccC
Confidence 4678999999999 99999988 7999999765543 3333 22 45566789999987772 4444444
Q ss_pred --C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 96 --D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 96 --~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
| +|+.-++.+.+ .++.+.||. ..|+.++.+| -++.+++++.|++|++||++..++...+.....+ .+
T Consensus 77 k~d~tIryLsl~dNk--ylRYF~GH~-----~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNK--YLRYFPGHK-----KRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred CCCCceEEEEeecCc--eEEEcCCCC-----ceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 4 99999999998 899999999 9999999999 6699999999999999999988877666543333 47
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCC-CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKE-RSTIIYENP-VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
+|. .|-++|++.....|++||+|.-. .+-..+... ........+.|+| +|++|+.++..+. +++.|.-. +..+.
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~-~~~lDAf~-G~~~~ 223 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASF-IYLLDAFD-GTVKS 223 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCc-EEEEEccC-CcEee
Confidence 888 57777777777799999999863 233333321 3457889999998 9999999999988 99999877 55777
Q ss_pred EEecCCCCe---eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEEEEecCCCCce
Q 040307 250 VLSKHEGSV---NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINVVRWSPLELDW 325 (339)
Q Consensus 250 ~~~~~~~~v---~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l 325 (339)
++..+...- ....|.|++ +++++|+.||+|.+|+++++. ......+ +..++.++.|+|.- .
T Consensus 224 tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~------------~v~~~~~~~~~~~~~~~fnP~~--~ 288 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGK------------KVAVLRGPNGGPVSCVRFNPRY--A 288 (311)
T ss_pred eEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCc------------EeeEecCCCCCCccccccCCce--e
Confidence 777765433 578999999 699999999999999998887 2223334 68889999999984 4
Q ss_pred EEEecCCeEEEE
Q 040307 326 IAIAFVNKLQLL 337 (339)
Q Consensus 326 ~~~~~d~~v~~w 337 (339)
..++.+..+.+|
T Consensus 289 mf~sa~s~l~fw 300 (311)
T KOG1446|consen 289 MFVSASSNLVFW 300 (311)
T ss_pred eeeecCceEEEE
Confidence 556666677777
No 72
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.1e-31 Score=200.82 Aligned_cols=276 Identities=15% Similarity=0.238 Sum_probs=214.2
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
-.+.|.+++|||. ...++++|++ ||+|++|+++..+. ... .....|.++|.+++|+.++. ++++.+.
T Consensus 26 P~DsIS~l~FSP~--~~~~~~A~SW----D~tVR~wevq~~g~-~~~--ka~~~~~~PvL~v~Wsddgs----kVf~g~~ 92 (347)
T KOG0647|consen 26 PEDSISALAFSPQ--ADNLLAAGSW----DGTVRIWEVQNSGQ-LVP--KAQQSHDGPVLDVCWSDDGS----KVFSGGC 92 (347)
T ss_pred cccchheeEeccc--cCceEEeccc----CCceEEEEEecCCc-ccc--hhhhccCCCeEEEEEccCCc----eEEeecc
Confidence 3578999999995 2566778884 99999999987632 222 22368999999999999994 4444455
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR--RVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
| .+++||+.+++ ...+..|. ++|..+.|-+ ... .|++|+.|.+|+.||++...++.++. -.+.+.++
T Consensus 93 Dk~~k~wDL~S~Q---~~~v~~Hd-----~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 93 DKQAKLWDLASGQ---VSQVAAHD-----APVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred CCceEEEEccCCC---eeeeeecc-----cceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 7 99999999984 55667777 8999999986 444 89999999999999999999888885 45677777
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEE
Q 040307 173 SWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVL 251 (339)
Q Consensus 173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~ 251 (339)
..- ..+++.+..++.|.+|+++.+.......+.+ -+-.+++++..+ +.+..+.|+.+|. +.+..+..+. +.-..+
T Consensus 163 Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~Sp-Lk~Q~R~va~f~-d~~~~alGsiEGr-v~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 163 DVL-YPMAVVATAERHIAVYNLENPPTEFKRIESP-LKWQTRCVACFQ-DKDGFALGSIEGR-VAIQYIDDPNPKDNFTF 238 (347)
T ss_pred hcc-CceeEEEecCCcEEEEEcCCCcchhhhhcCc-ccceeeEEEEEe-cCCceEeeeecce-EEEEecCCCCccCceeE
Confidence 665 5577888889999999998775433333322 345788999886 7777799999999 9998887631 333566
Q ss_pred ecCCC---------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307 252 SKHEG---------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 252 ~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 322 (339)
+.|.. .|++|+|+|.. ..|+|++.||++.+||-.... .......|..+|++.+|+.+|
T Consensus 239 kCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~------------kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 239 KCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART------------KLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred EEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh------------hhhccCcCCCccceeEecCCC
Confidence 66652 57899999998 499999999999999998876 233456789999999999999
Q ss_pred CceE-EEecC
Q 040307 323 LDWI-AIAFV 331 (339)
Q Consensus 323 ~~l~-~~~~d 331 (339)
..++ |.|.|
T Consensus 306 ~ifaYA~gYD 315 (347)
T KOG0647|consen 306 SIFAYALGYD 315 (347)
T ss_pred CEEEEEeecc
Confidence 8665 55655
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.7e-31 Score=211.54 Aligned_cols=286 Identities=15% Similarity=0.187 Sum_probs=228.2
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc--ccce----------eeEe-ecCCCCceEE
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD--FSAD----------NRLI-FDHPYTPTNI 77 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~--~~~~----------~~~~-~~~~~~v~~l 77 (339)
...-.|.-+|.+++++|+ ..+..+++ .+++|.=|+....... +... .... ..|...+.++
T Consensus 136 ~~~~~H~~s~~~vals~d---~~~~fsas----k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPD---DKRVFSAS----KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred eeeccccCcceEEEeecc---ccceeecC----CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 333457789999999999 99999999 8999988775433211 0000 0111 2688899999
Q ss_pred EEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 040307 78 AFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR 155 (339)
Q Consensus 78 ~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 155 (339)
+.++|+ ++||+|+ | .|.||+.++.+ .+..+.+|. ..|.+++|-. ..+.+++++.|+.|++|+++.
T Consensus 209 avS~Dg-----kylatgg~d~~v~Iw~~~t~e--hv~~~~ghr-----~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 209 AVSSDG-----KYLATGGRDRHVQIWDCDTLE--HVKVFKGHR-----GAVSSLAFRK-GTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred EEcCCC-----cEEEecCCCceEEEecCcccc--hhhcccccc-----cceeeeeeec-CccceeeeecCCceEEEehhH
Confidence 999999 9999998 5 89999999988 888899998 9999999985 778999999999999999998
Q ss_pred CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307 156 EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN 234 (339)
Q Consensus 156 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 234 (339)
...+.++.+|.+.|..+.-. -...+-+|+.|+++++|++... ...++.. +.+.+-+++|- +...+++|+.+|.
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg--~~~sidcv~~I--n~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRG--GEGSIDCVAFI--NDEHFVSGSDNGS 349 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeC--CCCCeeeEEEe--cccceeeccCCce
Confidence 88888899999999999888 4556666669999999999433 4455555 56789999996 7789999999999
Q ss_pred eEEEEecCCCCCceEEEe-cC-----------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307 235 KVVVLDIRFPTNPVVVLS-KH-----------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 235 ~i~i~d~~~~~~~~~~~~-~~-----------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
|.+|++.+ .+|+.+.. +| ..+|++++..|.. .++++|+.+|.|++|.+..+. + .+.
T Consensus 350 -IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~-r--------~i~ 417 (479)
T KOG0299|consen 350 -IALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGL-R--------AIN 417 (479)
T ss_pred -EEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCc-c--------ccc
Confidence 99999987 55665443 22 2389999999998 599999999999999999985 1 234
Q ss_pred ceeeecccceeEEEEecCCCCceEEE-ecCCeE
Q 040307 303 PELCYQSMAEINVVRWSPLELDWIAI-AFVNKL 334 (339)
Q Consensus 303 ~~~~~~~~~~i~~~~~~p~~~~l~~~-~~d~~v 334 (339)
++......+.|++++|+++|..++++ +..-.+
T Consensus 418 ~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 418 LLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred eeeecccccEEEEEEEccCCCEEEEeccccccc
Confidence 55555678899999999999977765 444333
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-31 Score=223.31 Aligned_cols=247 Identities=16% Similarity=0.286 Sum_probs=208.8
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
+..+. .+.|+++.|+++ |.+||+|. .+|.|.|||.......... ...|...|-+++|. . ..
T Consensus 212 l~~~~-~~~vtSv~ws~~---G~~LavG~----~~g~v~iwD~~~~k~~~~~----~~~h~~rvg~laW~--~-----~~ 272 (484)
T KOG0305|consen 212 LCSFG-EELVTSVKWSPD---GSHLAVGT----SDGTVQIWDVKEQKKTRTL----RGSHASRVGSLAWN--S-----SV 272 (484)
T ss_pred eEecC-CCceEEEEECCC---CCEEEEee----cCCeEEEEehhhccccccc----cCCcCceeEEEecc--C-----ce
Confidence 33443 789999999999 99999999 8999999776654433332 23499999999999 3 67
Q ss_pred EEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307 91 VATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE 168 (339)
Q Consensus 91 la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 168 (339)
+.+|+. .|..+|+...+. ...++.+|. ..|..+.|++ ++.++|+|+.|+.+.|||....+++..+..|...
T Consensus 273 lssGsr~~~I~~~dvR~~~~-~~~~~~~H~-----qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA 345 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQH-VVSTLQGHR-----QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA 345 (484)
T ss_pred EEEecCCCcEEEEEEecchh-hhhhhhccc-----ceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEecccee
Confidence 888874 999999998762 222477888 8999999998 9999999999999999999888889999999999
Q ss_pred eeEEEecC--CcEEEEEe--CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 169 VYDISWGG--FNVFASVS--GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 169 v~~~~~~~--~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
|..++|+| ..+||+|+ .|+.|++||..++.....+... ..|.++.|++...+++.+.+.....|.||+..+
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps- 420 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS- 420 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-
Confidence 99999994 88999986 5899999999998866665554 799999999966667766555555699999988
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+++..+.+|...|..++++|+| ..+++|+.|.++++|++-...
T Consensus 421 ~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred cceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence 66789999999999999999999 599999999999999998754
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-31 Score=223.13 Aligned_cols=288 Identities=14% Similarity=0.174 Sum_probs=240.0
Q ss_pred eeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc---ccceeeE-eecCCCCceEEEEcCCCCCCC
Q 040307 12 HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD---FSADNRL-IFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 12 ~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~---~~~~~~~-~~~~~~~v~~l~~~~~~~~~~ 87 (339)
.+......|.+++|-|.....+.|++ - .++.+..|.++..... ......+ ..+|...|.++++|.+.
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~-l----~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~---- 385 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVL-L----ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS---- 385 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEE-e----ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc----
Confidence 34456788999999998543344555 3 4899999888863222 1111111 25899999999999999
Q ss_pred CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
.++++|++ .++||+.++.+ +++++.. ..+.+..|-| .+++++.|...|.+.+||+.+...+.++++|.
T Consensus 386 -~~~~Sga~~SikiWn~~t~k--ciRTi~~-------~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 386 -ILLASGAGESIKIWNRDTLK--CIRTITC-------GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred -eeeeecCCCcEEEEEccCcc--eeEEecc-------ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccc
Confidence 89999886 99999999887 8888877 6788999998 88999999999999999999999888999999
Q ss_pred CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc-----ee-------eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKER-----ST-------IIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-----~~-------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
+.|++++.+ ++..+++|+.|.+|++||..--.. .. ...+ -...|.++.++| ++++|+++=.|+
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe---l~ddvL~v~~Sp-dgk~LaVsLLdn 530 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE---LEDDVLCVSVSP-DGKLLAVSLLDN 530 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe---ccccEEEEEEcC-CCcEEEEEeccC
Confidence 999999999 799999999999999999752211 00 1111 236899999999 999999999999
Q ss_pred CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI 313 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 313 (339)
+ ++||-+.+ -+...++-+|.-+|.++..+||+ ++++|||.|.+|+||-++-+. ....+++|+..|
T Consensus 531 T-VkVyflDt-lKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD------------CHKS~fAHdDSv 595 (888)
T KOG0306|consen 531 T-VKVYFLDT-LKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD------------CHKSFFAHDDSV 595 (888)
T ss_pred e-EEEEEecc-eeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccch------------hhhhhhcccCce
Confidence 9 99999887 55667888999999999999999 699999999999999999988 233778999999
Q ss_pred EEEEecCCCCceEEEecCCeEEEEe
Q 040307 314 NVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 314 ~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.++.|.|....++++|.|+.++-|+
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeec
Confidence 9999999988888999999999995
No 76
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-32 Score=230.65 Aligned_cols=287 Identities=16% Similarity=0.338 Sum_probs=230.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe--ecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI--FDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.+....+|+.+++ -..+++++ ...+.||.++............. ......+..|+|....+ ++||+
T Consensus 38 ~k~~~nAIs~nr~---~~qiv~AG-----rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~----NlIAT 105 (839)
T KOG0269|consen 38 LKAKANAISVNRD---INQIVVAG-----RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYS----NLIAT 105 (839)
T ss_pred cccccceEeecCC---cceeEEec-----ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchh----hhhee
Confidence 3567788888898 78888888 68889988877655444421210 11123467888986654 89999
Q ss_pred eCC--cEEEEeecCC-cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 94 SGD--SLRLWEIHDD-RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 94 ~~~--~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
++. .|.+||+... ....+..|..|+ ..+++++|++...++|++|+.||+|++||++..+...++.+....|.
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~-----Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHE-----RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhc-----cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 984 9999999872 112566788888 99999999998999999999999999999999988888888888999
Q ss_pred EEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-Cc
Q 040307 171 DISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-NP 247 (339)
Q Consensus 171 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~ 247 (339)
+++|+ +++.|+++...|.+++||+|........+.. |.++|.++.|+| ++.+||+|+.|+. |+|||+.... .+
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A--H~GpV~c~nwhP-nr~~lATGGRDK~-vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA--HNGPVLCLNWHP-NREWLATGGRDKM-VKIWDMTDSRAKP 256 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc--ccCceEEEeecC-CCceeeecCCCcc-EEEEeccCCCccc
Confidence 99999 6899999999999999999999876665555 899999999999 9999999999999 9999998533 33
Q ss_pred eEEEecCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc-
Q 040307 248 VVVLSKHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD- 324 (339)
Q Consensus 248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~- 324 (339)
+.++. ...+|.+|.|-|..+..|++++ .|-.|+|||++..- ++-.....|...++.++|......
T Consensus 257 ~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----------IP~~t~~eH~~~vt~i~W~~~d~~~ 324 (839)
T KOG0269|consen 257 KHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----------IPYATFLEHTDSVTGIAWDSGDRIN 324 (839)
T ss_pred eeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-----------ccceeeeccCccccceeccCCCcee
Confidence 44444 3578999999999888899888 57899999999977 233456679999999999874443
Q ss_pred eEEEecCCeEE
Q 040307 325 WIAIAFVNKLQ 335 (339)
Q Consensus 325 l~~~~~d~~v~ 335 (339)
+.+++.|++|.
T Consensus 325 l~s~sKD~tv~ 335 (839)
T KOG0269|consen 325 LWSCSKDGTVL 335 (839)
T ss_pred eEeecCccHHH
Confidence 55788898763
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-31 Score=202.07 Aligned_cols=286 Identities=15% Similarity=0.236 Sum_probs=236.5
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|.+.|..++-... ..++.+++ .|.+-+||.+.. +.+.. .+ .+|.+.|++++|++.+ .++++++
T Consensus 147 HkDGiW~Vaa~~t---qpi~gtAS----ADhTA~iWs~Es--g~CL~--~Y-~GH~GSVNsikfh~s~-----~L~lTaS 209 (481)
T KOG0300|consen 147 HKDGIWHVAADST---QPICGTAS----ADHTARIWSLES--GACLA--TY-TGHTGSVNSIKFHNSG-----LLLLTAS 209 (481)
T ss_pred cccceeeehhhcC---Ccceeecc----cccceeEEeecc--cccee--ee-cccccceeeEEecccc-----ceEEEcc
Confidence 6789999988877 77899999 799999966554 44443 33 7999999999999999 8999887
Q ss_pred C--cEEEEee------cCC--------c------------------------ceeEEEeecCCCccCCCCEEEEEEcCCC
Q 040307 96 D--SLRLWEI------HDD--------R------------------------TELKSLLNSNKTSEFSSAITSFDWAGFD 135 (339)
Q Consensus 96 ~--~i~iw~~------~~~--------~------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 135 (339)
+ +..||.. ..+ + ..++..+.+|. ..|.+..|-. .
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~-----~vV~a~dWL~-g 283 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR-----AVVSACDWLA-G 283 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc-----cceEehhhhc-C
Confidence 4 8899972 110 0 13455566666 8899999996 8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307 136 TRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL 214 (339)
Q Consensus 136 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 214 (339)
++.+++++.|.+..+||+++++.+..+.+|....+.++-+ ...++++.+.|.+.++||+|..-.....+.+ |...|+
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG--HtdtVT 361 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG--HTDTVT 361 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc--ccccee
Confidence 9999999999999999999999999999999999999888 5778899999999999999966555566665 889999
Q ss_pred EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307 215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN 294 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 294 (339)
++.|. .+..+++|+.|.+ |++||++++..|+.++.. ..+++.++.+..+ .+++.--.+..|++||+....- +
T Consensus 362 S~vF~--~dd~vVSgSDDrT-vKvWdLrNMRsplATIRt-dS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~Rl-a-- 433 (481)
T KOG0300|consen 362 SVVFN--TDDRVVSGSDDRT-VKVWDLRNMRSPLATIRT-DSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRL-A-- 433 (481)
T ss_pred EEEEe--cCCceeecCCCce-EEEeeeccccCcceeeec-CCccceeEeecCC-ceEEeccCCceEEEEecCCCcc-c--
Confidence 99997 5678889999998 999999999999999986 6789999999888 4888888889999999988661 0
Q ss_pred CCCCCcccceeeecccceeEEEEecCCCC--ceEEEecCCeEEEEeC
Q 040307 295 GGPSGDVEPELCYQSMAEINVVRWSPLEL--DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~--~l~~~~~d~~v~~w~v 339 (339)
.++.....+|...|++++|..+.+ .|++++.|..+.-|+|
T Consensus 434 -----RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 434 -----RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred -----cCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 111224557999999999987654 4889999999999975
No 78
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-30 Score=209.03 Aligned_cols=295 Identities=20% Similarity=0.271 Sum_probs=227.6
Q ss_pred EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC--CCCCCeEEEeC-C-c
Q 040307 22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE--TLNPDIVATSG-D-S 97 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~~~~~la~~~-~-~ 97 (339)
.+..-|. ..++++|-. .+....+.+|-++.....+...+.+ -......|++|...+. +..++++|.|+ + .
T Consensus 130 e~~V~ps---DnlIl~ar~-eddvs~LEvYVyn~~e~nlYvHHD~--ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~ 203 (463)
T KOG0270|consen 130 EEQVKPS---DNLILCARN-EDDVSYLEVYVYNEEEENLYVHHDF--ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE 203 (463)
T ss_pred cceeccC---CcEEEEeec-cCCceEEEEEEEcCCCcceeEecce--eccCcchhhhhhhcCCCCCCCcceEEEeccCce
Confidence 4455565 666777663 3335677777788776555543222 2244567888865421 12337999998 6 9
Q ss_pred EEEEeecCCc-ceeEEEe-------------ecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307 98 LRLWEIHDDR-TELKSLL-------------NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV 163 (339)
Q Consensus 98 i~iw~~~~~~-~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 163 (339)
|.|||++-.. ..+..++ +.+...+|..+|..+.|+....+.||+|+.|.+|++||+.++++..++.
T Consensus 204 IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~ 283 (463)
T KOG0270|consen 204 IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT 283 (463)
T ss_pred eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence 9999986432 1111111 2233344558899999997667899999999999999999999999999
Q ss_pred ccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 164 AHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 164 ~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
.|...|.+++|+ ....|++|+.|+++.+.|.|........... .+.|-.++|+|.....++++..||. ++-+|+
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~-v~~~D~ 359 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGT-VYYFDI 359 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCCCceeEEEecCCce-EEeeec
Confidence 899999999999 5889999999999999999976554444444 4689999999988889999999999 999999
Q ss_pred CCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc---cceeEEEEe
Q 040307 242 RFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS---MAEINVVRW 318 (339)
Q Consensus 242 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~ 318 (339)
|++++++.++++|.++|.++++++..+.+++|++.|+.|++|++.... |.....| .+...++++
T Consensus 360 R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-------------~~~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 360 RNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-------------PKSVKEHSFKLGRLHCFAL 426 (463)
T ss_pred CCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-------------Ccccccccccccceeeccc
Confidence 999999999999999999999999988899999999999999999877 4433333 234778889
Q ss_pred cCCCCceEE-EecCCeEEEEeC
Q 040307 319 SPLELDWIA-IAFVNKLQLLKV 339 (339)
Q Consensus 319 ~p~~~~l~~-~~~d~~v~~w~v 339 (339)
.|+-.++++ ++..+.+++|++
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred CCCcceEEEecCccceEEEeec
Confidence 998887665 556667999985
No 79
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-31 Score=196.70 Aligned_cols=253 Identities=19% Similarity=0.236 Sum_probs=203.2
Q ss_pred EeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEc-CCCCCEEEE
Q 040307 66 LIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWA-GFDTRRVAT 141 (339)
Q Consensus 66 ~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~ 141 (339)
+...|.+.|..+...-.+ +.||+++ | +|+|+.+++... .++.+|.+|. +||..++|. |.-|.+||+
T Consensus 6 idt~H~D~IHda~lDyyg-----krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~-----GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYG-----KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS-----GPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhhhhhhhhhHhhhhhhc-----ceeeeecCCccEEEEEEcCCCCceeeeEecCCC-----CCeeEEeecccccCcEeeE
Confidence 346799999999988888 7888887 6 999999987653 6888999999 999999995 557899999
Q ss_pred EeCCCeEEEEECCCCe--eeeeeeccCCceeEEEecC---CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307 142 CSVDTTCVIWDIDREI--LETQLVAHDREVYDISWGG---FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL 216 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 216 (339)
++.||.|.||.-+.++ .......|...|++++|.| +-.|++++.||.|.+.+.+....-........|.-.++++
T Consensus 76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 9999999999988875 3445578999999999984 7789999999999999988763221112222377899999
Q ss_pred EEecCC--C-----------CeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCC---CCeEEEEeCCCc
Q 040307 217 EWNKAD--P-----------RFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLY---GRRLCSVADDSR 279 (339)
Q Consensus 217 ~~~p~~--~-----------~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~ 279 (339)
+|.|.. | +.|++|+.|+. |+||+..... ....++.+|.+.|+.++|.|.- ...||+++.||+
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 999841 2 56999999999 9999987642 2334589999999999999974 247999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 280 ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 280 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
|.||..+... ...+...+......+..+.||+.|..|..++.|+.+.+|+
T Consensus 235 viIwt~~~e~---------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 235 VIIWTKDEEY---------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred EEEEEecCcc---------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9999888443 0112334445677899999999998777788999999996
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.8e-30 Score=195.40 Aligned_cols=268 Identities=17% Similarity=0.208 Sum_probs=211.5
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
-.+.|.++.|+|. ++.|+++++ ||.+++|+.... .... .+.|..++.+.+|.++. ..+..+-
T Consensus 12 P~d~IS~v~f~~~---~~~LLvssW----DgslrlYdv~~~--~l~~----~~~~~~plL~c~F~d~~-----~~~~G~~ 73 (323)
T KOG1036|consen 12 PEDGISSVKFSPS---SSDLLVSSW----DGSLRLYDVPAN--SLKL----KFKHGAPLLDCAFADES-----TIVTGGL 73 (323)
T ss_pred ChhceeeEEEcCc---CCcEEEEec----cCcEEEEeccch--hhhh----heecCCceeeeeccCCc-----eEEEecc
Confidence 3578999999998 888888885 999999887766 3332 47899999999999976 5555555
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
| .|+.+|++++. ...+..|. .+|.++.+++ ....+++|+.|++|++||.+.......+. ....|.++..
T Consensus 74 dg~vr~~Dln~~~---~~~igth~-----~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 74 DGQVRRYDLNTGN---EDQIGTHD-----EGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred CceEEEEEecCCc---ceeeccCC-----CceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 7 99999999984 45566677 8999999997 77899999999999999998755555554 3448888887
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC---CCceEEE
Q 040307 175 GGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP---TNPVVVL 251 (339)
Q Consensus 175 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~---~~~~~~~ 251 (339)
. ++.|+.|+.+..+.+||+|......+..+. .-+..++++++.| ++.-.++++.+|+ |.+=.+... ......+
T Consensus 144 ~-g~~LvVg~~~r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~p-n~eGy~~sSieGR-VavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 144 S-GNRLVVGTSDRKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVP-NGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred c-CCEEEEeecCceEEEEEcccccchhhhccc-cceeEEEEEEEec-CCCceEEEeecce-EEEEccCCchHHhhhceeE
Confidence 7 888999999999999999998865543333 2356889999999 7888888899998 766544432 1234556
Q ss_pred ecCCC---------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCC
Q 040307 252 SKHEG---------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPL 321 (339)
Q Consensus 252 ~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~ 321 (339)
+.|.. +|++++|+|-. ..|+||+.||.|.+||+...+ .+ .+......|.+++|+.+
T Consensus 220 kCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK-------------rl~q~~~~~~SI~slsfs~d 285 (323)
T KOG1036|consen 220 KCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK-------------RLKQLAKYETSISSLSFSMD 285 (323)
T ss_pred EeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh-------------hhhhccCCCCceEEEEeccC
Confidence 66643 79999999997 599999999999999999987 33 23334567999999999
Q ss_pred CCceEEEe
Q 040307 322 ELDWIAIA 329 (339)
Q Consensus 322 ~~~l~~~~ 329 (339)
|..|+.++
T Consensus 286 G~~LAia~ 293 (323)
T KOG1036|consen 286 GSLLAIAS 293 (323)
T ss_pred CCeEEEEe
Confidence 98766554
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.7e-30 Score=223.16 Aligned_cols=271 Identities=15% Similarity=0.182 Sum_probs=227.0
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+...+.+..|.++ ++++++ .+.+|++|+.... .... .-..+|.+.|.++++..-+ .+|++|+
T Consensus 207 ~~~~~~~~q~~~~-----~~~~~s----~~~tl~~~~~~~~--~~i~--~~l~GH~g~V~~l~~~~~~-----~~lvsgS 268 (537)
T KOG0274|consen 207 DDHVVLCLQLHDG-----FFKSGS----DDSTLHLWDLNNG--YLIL--TRLVGHFGGVWGLAFPSGG-----DKLVSGS 268 (537)
T ss_pred CcchhhhheeecC-----eEEecC----CCceeEEeecccc--eEEE--eeccCCCCCceeEEEecCC-----CEEEEEe
Confidence 3567888888855 788888 7999999665543 3332 2126999999999998755 8999998
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
| ++++||..+++ +...+.+|. ..|.++... +.++++|+.|.+|++|+++++..+..+.+|.++|+++.
T Consensus 269 ~D~t~rvWd~~sg~--C~~~l~gh~-----stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 269 TDKTERVWDCSTGE--CTHSLQGHT-----SSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred cCCcEEeEecCCCc--EEEEecCCC-----ceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 6 99999999998 999999998 889998875 47888899999999999999999999988999999999
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307 174 WGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK 253 (339)
Q Consensus 174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~ 253 (339)
.+ +.++++|+.|++|++||+++.+....+ .+ |...|.++.+.+ . ..+++|+.|+. |++||++...+++..+.+
T Consensus 339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl-~g--H~~~V~sl~~~~-~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSL-SG--HTGRVYSLIVDS-E-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred ec-CCEEEEEecCceEEEEEhhhceeeeee-cC--CcceEEEEEecC-c-ceEEeeeeccc-eEeecCCchhhhhhhhcC
Confidence 98 889999999999999999977754443 33 789999998864 3 89999999998 999999984378999999
Q ss_pred CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec-ccceeEEEEecCCCCceEEEecC
Q 040307 254 HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ-SMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
|..-+..+.+. + ++|++++.|+.|++||....+ .. ...+ |...|..+++. .+.+++++.|
T Consensus 412 h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~-------------~~~~~~~~~~~~v~~l~~~--~~~il~s~~~ 473 (537)
T KOG0274|consen 412 HTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGE-------------CLRTLEGRHVGGVSALALG--KEEILCSSDD 473 (537)
T ss_pred Ccccccccccc--c-ceeEeccccccEEEeecccCc-------------eeeeeccCCcccEEEeecC--cceEEEEecC
Confidence 99988776654 3 589999999999999999988 44 3334 56889999887 4568899999
Q ss_pred CeEEEEeC
Q 040307 332 NKLQLLKV 339 (339)
Q Consensus 332 ~~v~~w~v 339 (339)
+.+++|++
T Consensus 474 ~~~~l~dl 481 (537)
T KOG0274|consen 474 GSVKLWDL 481 (537)
T ss_pred CeeEEEec
Confidence 99999985
No 82
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.7e-31 Score=227.12 Aligned_cols=248 Identities=20% Similarity=0.367 Sum_probs=203.8
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
......+|...++. .-++.++. .+.||.++.........+. +.+...+ ..+..+.|+....++||+++..|.
T Consensus 38 ~k~~~nAIs~nr~~-----~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~-~S~~DVkW~~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 38 LKAKANAISVNRDI-----NQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKF-YSAADVKWGQLYSNLIATCSTNGV 111 (839)
T ss_pred cccccceEeecCCc-----ceeEEecccceeeEeeCcccCCcceeeeccccccee-eehhhcccccchhhhheeecCCCc
Confidence 34567788888888 66777776 8899988765422222222 1111111 456788898768899999999999
Q ss_pred EEEEECCC---CeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 148 CVIWDIDR---EILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 148 v~i~d~~~---~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
|.+||+.. .+.+..+..|+..++++.|+ ..++|++|+.||.|++||+|..+.....+. ....|+.++|+|..
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKFSPGY 188 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceeeccCC
Confidence 99999977 55667889999999999999 689999999999999999999886655544 35689999999988
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
+.+++++.+.|. +++||+|.+.++...+.+|.++|.++.|+|++ .+||||+.|+.|+|||+.... ..
T Consensus 189 ~~~F~s~~dsG~-lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~-----------~~ 255 (839)
T KOG0269|consen 189 GNKFASIHDSGY-LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSR-----------AK 255 (839)
T ss_pred CceEEEecCCce-EEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCC-----------cc
Confidence 999999888888 99999999999999999999999999999988 699999999999999999766 34
Q ss_pred ceeeecccceeEEEEecCCCCceEEEe---cCCeEEEEeC
Q 040307 303 PELCYQSMAEINVVRWSPLELDWIAIA---FVNKLQLLKV 339 (339)
Q Consensus 303 ~~~~~~~~~~i~~~~~~p~~~~l~~~~---~d~~v~~w~v 339 (339)
+........+|..|.|-|..++.++.| .|-.|+||+|
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 556667788999999999998877654 5788999986
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=211.37 Aligned_cols=239 Identities=17% Similarity=0.210 Sum_probs=202.9
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v 148 (339)
..+.|.+++|+|... .-+|+.+. .+.||+..+.. ...++...+ ..+.+++|.. ||.++++|+..|.|
T Consensus 25 e~~~vssl~fsp~~P----~d~aVt~S~rvqly~~~~~~--~~k~~srFk-----~~v~s~~fR~-DG~LlaaGD~sG~V 92 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHP----YDFAVTSSVRVQLYSSVTRS--VRKTFSRFK-----DVVYSVDFRS-DGRLLAAGDESGHV 92 (487)
T ss_pred ccCcceeEecCCCCC----CceEEecccEEEEEecchhh--hhhhHHhhc-----cceeEEEeec-CCeEEEccCCcCcE
Confidence 456799999999873 66666665 99999988775 444444444 7899999996 99999999999999
Q ss_pred EEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307 149 VIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 226 (339)
+|+|+.+...++.+.+|..++..+.|+ ++..|++|+.|+.+++||+.+... ......|+..|.+.+|+|.++.++
T Consensus 93 ~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 93 KVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred EEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCeEE
Confidence 999987766788899999999999999 578899999999999999998873 334445889999999999888999
Q ss_pred EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-e
Q 040307 227 ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-L 305 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~ 305 (339)
++|+.||. |++||++.....+.++. |..+|..+.+-|.| .++++++. +.|++||+..+. +.. .
T Consensus 170 vtGsYDg~-vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~------------qll~~ 233 (487)
T KOG0310|consen 170 VTGSYDGK-VRLWDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGG------------QLLTS 233 (487)
T ss_pred EecCCCce-EEEEEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCc------------eehhh
Confidence 99999999 99999998666666665 78999999999998 48888875 589999999776 222 3
Q ss_pred eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...|...|+|+++..++..|++++-|+.+++|++
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 3459999999999999999999999999999973
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=8e-30 Score=205.11 Aligned_cols=285 Identities=12% Similarity=0.135 Sum_probs=230.7
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
..+|+++.|+|. ..+|++|+ .|+.++||.++........ .+ .--..+|.+..|.|+|. ..+++++.
T Consensus 213 ~~~I~sv~FHp~---~plllvaG----~d~~lrifqvDGk~N~~lq--S~-~l~~fPi~~a~f~p~G~----~~i~~s~r 278 (514)
T KOG2055|consen 213 HGGITSVQFHPT---APLLLVAG----LDGTLRIFQVDGKVNPKLQ--SI-HLEKFPIQKAEFAPNGH----SVIFTSGR 278 (514)
T ss_pred cCCceEEEecCC---CceEEEec----CCCcEEEEEecCccChhhe--ee-eeccCccceeeecCCCc----eEEEeccc
Confidence 478999999999 99999999 6999999999887776555 33 23467899999999993 37777775
Q ss_pred --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
.++.||+.+.+...+..+.++.. ..+..+..+| ++++|+..+..|.|.+....+++.+..++ -.+.|..++|
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~----~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~f 352 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEE----KSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTF 352 (514)
T ss_pred ceEEEEeeccccccccccCCCCccc----chhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEE
Confidence 89999999988666666666541 4567788887 99999999999999999999999888886 5678999999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC-----CCCce
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF-----PTNPV 248 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~-----~~~~~ 248 (339)
+ ++..|++++.+|.|.+||++........... ..-.-++++.++ ++.+||+|+..|- |.|||..+ ..+|+
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~-ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPi 428 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISL-NGSYLATGSDSGI-VNIYDGNSCFASTNPKPI 428 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEeec--CccceeeeeecC-CCceEEeccCcce-EEEeccchhhccCCCCch
Confidence 9 8999999999999999999999755554433 223346677776 8899999999998 99999643 24677
Q ss_pred EEEecCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceee----ecccceeEEEEecCCC
Q 040307 249 VVLSKHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELC----YQSMAEINVVRWSPLE 322 (339)
Q Consensus 249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p~~ 322 (339)
..+..-...|++++|+|+. .+||.+| .+..+++-.+.... .... -..-+.|++++|||.+
T Consensus 429 k~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~T-------------VFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 429 KTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCT-------------VFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred hhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEecccee-------------eeccCCCCCCcccceEEEEecCCC
Confidence 7777777899999999999 5888887 46789998887765 1211 1234579999999999
Q ss_pred CceEEEecCCeEEEEeC
Q 040307 323 LDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 323 ~~l~~~~~d~~v~~w~v 339 (339)
.+++.+..+|.+.+|++
T Consensus 495 G~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEeecCCCceeeEee
Confidence 88888889999999986
No 85
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.2e-28 Score=214.64 Aligned_cols=248 Identities=17% Similarity=0.262 Sum_probs=182.5
Q ss_pred cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcc------eeEEEee
Q 040307 44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRT------ELKSLLN 115 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~------~~~~~~~ 115 (339)
..+.|++|+.... .... .+ .+|.+.|.+++|+|+.. .+||+|+ | .|+||++.+... .+...+.
T Consensus 52 ~~gvI~L~~~~r~--~~v~--~L-~gH~~~V~~lafsP~~~----~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 52 LIGAIRLENQMRK--PPVI--KL-KGHTSSILDLQFNPCFS----EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred ceeEEEeeecCCC--ceEE--EE-cCCCCCEEEEEEcCCCC----CEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 5788999765443 2221 33 68999999999999732 7899988 4 999999976421 2345677
Q ss_pred cCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEE
Q 040307 116 SNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFD 193 (339)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d 193 (339)
+|. ..|.+++|+| ++. +|++++.|+.|++||+++++....+. |...|.+++|+ ++.+|++++.|+.|++||
T Consensus 123 gH~-----~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 123 GHK-----KKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred cCC-----CcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 777 8999999999 665 56789999999999999998777775 66789999999 899999999999999999
Q ss_pred CCCCcceeeEEeCCCCCCCeEE-----EEEecCCCCeEEEEeeCC---CeEEEEecCCCCCceEEEecCC--CCeeEEEe
Q 040307 194 LRDKERSTIIYENPVQDCPLLR-----LEWNKADPRFMATVGMDS---NKVVVLDIRFPTNPVVVLSKHE--GSVNGISW 263 (339)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~-----~~~~p~~~~~l~~~~~d~---~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~ 263 (339)
+++++.... +.. |.+.+.. ..|++ ++.+|++++.++ ++|+|||++....++..+..+. +.+.....
T Consensus 196 ~Rsg~~i~t-l~g--H~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 196 PRKQEIASS-FHI--HDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred CCCCcEEEE-Eec--ccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 999875543 333 4444332 23456 778888877775 2499999997677776654332 23333333
Q ss_pred ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307 264 APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL 323 (339)
Q Consensus 264 ~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 323 (339)
.+++ .++++|+.|+.|++|++..+. ...+..+.+..++.+++|.|...
T Consensus 272 ~~tg-~l~lsGkGD~tIr~~e~~~~~-----------~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 272 ESTG-LIYLIGKGDGNCRYYQHSLGS-----------IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CCCC-CEEEEEECCCeEEEEEccCCc-----------EEeecccccCCCccceEEccccc
Confidence 4446 789999999999999997654 12233445677888899999753
No 86
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.4e-29 Score=215.65 Aligned_cols=240 Identities=17% Similarity=0.241 Sum_probs=181.3
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcce-----------eEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTE-----------LKSLLNSNKTSEFSSAITSFDWAGFDTRRV 139 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 139 (339)
..|.....++++. .++++..+ ....|+...+... ....+.+|. +.|++++|+|.++++|
T Consensus 21 ~~i~~~~~~~d~~----~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~-----~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 21 LNVTPSTALWDCS----NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE-----GPIIDVAFNPFDPQKL 91 (493)
T ss_pred eccccccccCCCC----CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC-----CCEEEEEEcCCCCCEE
Confidence 3455566666752 34444444 5567765443200 011355666 8999999998778899
Q ss_pred EEEeCCCeEEEEECCCC-------eeeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC
Q 040307 140 ATCSVDTTCVIWDIDRE-------ILETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD 210 (339)
Q Consensus 140 ~~~~~d~~v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 210 (339)
++|+.|++|++||+.++ +++..+.+|...|.+++|++ +++|++++.|+.|++||+++++.... .. .|.
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~-l~--~h~ 168 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV-IK--CHS 168 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE-Ec--CCC
Confidence 99999999999999764 24667889999999999994 47999999999999999998764333 22 367
Q ss_pred CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCC-eeEEEeccCCCCeEEEEe----CCCcEEEEEe
Q 040307 211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGS-VNGISWAPLYGRRLCSVA----DDSRALIWEV 285 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~----~dg~v~iwd~ 285 (339)
..|.+++|+| ++.+|++++.|+. |++||++. ++.+..+.+|.+. +..+.|.+++. .+++++ .|+.|++||+
T Consensus 169 ~~V~sla~sp-dG~lLatgs~Dg~-IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 169 DQITSLEWNL-DGSLLCTTSKDKK-LNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CceEEEEEEC-CCCEEEEecCCCE-EEEEECCC-CcEEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeC
Confidence 7899999998 8999999999999 99999998 5677888888765 45788999875 555543 4789999999
Q ss_pred cCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307 286 VGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v 339 (339)
+... .+.... .....+....|+|++..+++++ .|+.|++|++
T Consensus 245 r~~~------------~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 245 RKMA------------SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCC------------CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 8765 233322 2344566778999998887777 5999999985
No 87
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.97 E-value=5.3e-30 Score=201.26 Aligned_cols=258 Identities=18% Similarity=0.364 Sum_probs=202.6
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCC--------------cceeEEEeecCCCccCCCCEEEEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDD--------------RTELKSLLNSNKTSEFSSAITSFDW 131 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~ 131 (339)
.+|.+.++.+.-++.+. ..+.|+-++ .|+||++... +.+++.++.+|. ..=.+++|
T Consensus 148 i~h~g~~NRvr~~~~~~---~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-----~EGy~LdW 219 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGN---EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-----GEGYGLDW 219 (440)
T ss_pred cccccccceeeecccCC---cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-----ccceeeec
Confidence 47888899888888763 145555555 9999997532 246788888888 55669999
Q ss_pred cCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeC
Q 040307 132 AGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYEN 206 (339)
Q Consensus 132 ~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 206 (339)
||.....|++|..-+.|++|...++. -...+.+|+..|..++|+ ....|++|+.||+|+|||+|.+.....+..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~- 298 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST- 298 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-
Confidence 99766779999999999999998865 233456799999999999 488999999999999999999854333333
Q ss_pred CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC--CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP--TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
..|...|+-+.|+. ...+||+|+.||. ++|||+|.. ++|+..+..|..+|++|.|+|.....|++++.|.+|.|||
T Consensus 299 kAh~sDVNVISWnr-~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 299 KAHNSDVNVISWNR-REPLLASGGDDGT-LSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eccCCceeeEEccC-CcceeeecCCCce-EEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 34788999999996 5559999999999 999999863 4789999999999999999999878999999999999999
Q ss_pred ecCCCC----CCCCCCCCCcccceeeecc--cceeEEEEecCCCCceE-EEecCCeEEEE
Q 040307 285 VVGPGY----RSGNGGPSGDVEPELCYQS--MAEINVVRWSPLELDWI-AIAFVNKLQLL 337 (339)
Q Consensus 285 ~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~l~-~~~~d~~v~~w 337 (339)
+..... ..........++|++++-| +..|..+.|+++-+.++ +++.|| +.||
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 988763 1111112345678877767 45699999999987766 455555 3444
No 88
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6.1e-31 Score=212.62 Aligned_cols=241 Identities=16% Similarity=0.261 Sum_probs=200.9
Q ss_pred ecCCCCceEEEEcC-CCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 68 FDHPYTPTNIAFFP-SEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 68 ~~~~~~v~~l~~~~-~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
.+|+..|+++.|.| .+ .+|++++ | .|+||++-... .+++++.+|. .+|.+++|+. ++..|++++.
T Consensus 211 ~gH~kgvsai~~fp~~~-----hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~-----k~Vrd~~~s~-~g~~fLS~sf 278 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKG-----HLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHR-----KPVRDASFNN-CGTSFLSASF 278 (503)
T ss_pred cCCccccchhhhcccee-----eEEEecCCCceEEEEEEecCc-ceehhhhcch-----hhhhhhhccc-cCCeeeeeec
Confidence 58999999999999 66 8888888 6 99999998732 4999999999 9999999997 9999999999
Q ss_pred CCeEEEEECCCCeeeeeeeccCCceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 145 DTTCVIWDIDREILETQLVAHDREVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
|+.|++||+++|+++..+. ....++|+.|+ + .+.|++|+.|+.|+.||+|+++.... +. .|-+.|..+.|-+ +
T Consensus 279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-Yd--~hLg~i~~i~F~~-~ 353 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-YD--RHLGAILDITFVD-E 353 (503)
T ss_pred ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-HH--hhhhheeeeEEcc-C
Confidence 9999999999999998885 45578999999 3 58999999999999999999984333 22 3678999999997 9
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
+..+++.+.|+. ++||+.+.+ .++... ..+.....++..+|++ .+++.=+.|+.|.+|.+.... ..
T Consensus 354 g~rFissSDdks-~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~----------r~ 420 (503)
T KOG0282|consen 354 GRRFISSSDDKS-VRIWENRIP-VPIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF----------RL 420 (503)
T ss_pred CceEeeeccCcc-EEEEEcCCC-ccchhhcchhhccCcceecCCCC-CeehhhccCceEEEEeccccc----------cc
Confidence 999999999999 999999873 333322 2233467789999999 599999999999999977655 11
Q ss_pred cce-eeecc--cceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 302 EPE-LCYQS--MAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 302 ~~~-~~~~~--~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
... ...+| .+--..+.|||||++|++|..||.+.+|+
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 111 33345 44567899999999999999999999997
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-30 Score=205.65 Aligned_cols=245 Identities=18% Similarity=0.278 Sum_probs=196.0
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|..+|..+.|||| .++|++++ .+..+.+||.+ ++.... .+..++...+.+.+|.||+ .-+++|+
T Consensus 268 h~~~V~yi~wSPD---dryLlaCg----~~e~~~lwDv~--tgd~~~--~y~~~~~~S~~sc~W~pDg-----~~~V~Gs 331 (519)
T KOG0293|consen 268 HSQPVSYIMWSPD---DRYLLACG----FDEVLSLWDVD--TGDLRH--LYPSGLGFSVSSCAWCPDG-----FRFVTGS 331 (519)
T ss_pred ccCceEEEEECCC---CCeEEecC----chHheeeccCC--cchhhh--hcccCcCCCcceeEEccCC-----ceeEecC
Confidence 6789999999999 88888877 47788885555 444443 2234566889999999999 7788887
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
| ++..|+++... ....++-. ...|.+++..+ ||+++++...|..|++++.++......+. ...+|++++
T Consensus 332 ~dr~i~~wdlDgn~---~~~W~gvr----~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~ 402 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNI---LGNWEGVR----DPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFS 402 (519)
T ss_pred CCCcEEEecCCcch---hhcccccc----cceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEE
Confidence 6 99999998774 22223221 15689999997 99999999999999999998776554444 456899999
Q ss_pred ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
.+ +++++++.=.+..+++||+.....+.. +.+.....-+..-+|.-.+..++++|++|+. |+||+... ++++..+.
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~k-Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-gkll~~Ls 479 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVRK-YFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-GKLLAVLS 479 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHHH-hhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-CceeEeec
Confidence 99 899999988999999999997664444 3332233445566776556689999999999 99999887 88999999
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
+|...|++|+|+|..+.++|+++.||+|+||.....
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999899999999999999987654
No 90
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=196.65 Aligned_cols=238 Identities=15% Similarity=0.226 Sum_probs=200.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..|...|.+++.+|+. .++|+|++ ...+|++.+++ ....+.+|+ ..|+++.|+- ++.+||+|+.+
T Consensus 61 ~~H~~svFavsl~P~~-----~l~aTGGgDD~AflW~~~~ge--~~~eltgHK-----DSVt~~~Fsh-dgtlLATGdms 127 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNN-----NLVATGGGDDLAFLWDISTGE--FAGELTGHK-----DSVTCCSFSH-DGTLLATGDMS 127 (399)
T ss_pred hhcCCceEEEEeCCCC-----ceEEecCCCceEEEEEccCCc--ceeEecCCC-----CceEEEEEcc-CceEEEecCCC
Confidence 6899999999999977 89999984 99999999998 788899999 9999999995 99999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
|.|+||+..++.....+...-..+.-+.|+ -..+|+.|+.||.+.+|.+.+.. ...++.+ |..++++-.|.| +|+
T Consensus 128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~G--h~~~ct~G~f~p-dGK 203 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSG--HNSPCTCGEFIP-DGK 203 (399)
T ss_pred ccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecC--CCCCcccccccC-CCc
Confidence 999999999998888886556778889999 58899999999999999999874 3344444 788999999999 899
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEe---------------------------------------------------c
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLS---------------------------------------------------K 253 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~---------------------------------------------------~ 253 (339)
.++++..|++ |++||..+ ++|+..+. .
T Consensus 204 r~~tgy~dgt-i~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 204 RILTGYDDGT-IIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred eEEEEecCce-EEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 9999999999 99999987 44444432 0
Q ss_pred CCC---CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 254 HEG---SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 254 ~~~---~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
+.. .|-++.|+..-+ +.|+|+-||+|.|||+.... +.....|...|..+.|-+ ..+|++++.
T Consensus 282 ~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~~-------------~R~~c~he~~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAAST-------------LRHICEHEDGVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred chhhhhhhhhcccccccc-hhhcccccceEEEEecccch-------------hheeccCCCceEEEEEcC-cchheeecc
Confidence 111 222333444443 78899999999999999987 667778999999999999 668999999
Q ss_pred CCeEEEEeC
Q 040307 331 VNKLQLLKV 339 (339)
Q Consensus 331 d~~v~~w~v 339 (339)
||.|+.|+.
T Consensus 347 ~g~v~~wDa 355 (399)
T KOG0296|consen 347 NGKVRQWDA 355 (399)
T ss_pred CceEEeeec
Confidence 999999983
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.8e-29 Score=199.82 Aligned_cols=279 Identities=17% Similarity=0.184 Sum_probs=224.5
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
..+.++...|. ...+++|+ .|..+.++|... +.... .+ .+|...|+.+.|+|+. ..+++++ +
T Consensus 220 pgi~ald~~~s---~~~ilTGG----~d~~av~~d~~s--~q~l~--~~-~Gh~kki~~v~~~~~~-----~~v~~aSad 282 (506)
T KOG0289|consen 220 PGITALDIIPS---SSKILTGG----EDKTAVLFDKPS--NQILA--TL-KGHTKKITSVKFHKDL-----DTVITASAD 282 (506)
T ss_pred CCeeEEeecCC---CCcceecC----CCCceEEEecch--hhhhh--hc-cCcceEEEEEEeccch-----hheeecCCc
Confidence 46888888887 77899999 798999955444 44443 33 7999999999999999 7777777 6
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc--CCceeEEE
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH--DREVYDIS 173 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~v~~~~ 173 (339)
.|+||...... .......|. .+|+.+..+| ++.||++++.|++....|++++..+...... .-.+++.+
T Consensus 283 ~~i~vws~~~~s--~~~~~~~h~-----~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 283 EIIRVWSVPLSS--EPTSSRPHE-----EPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ceEEeecccccc--Ccccccccc-----ccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 99999998876 556667777 9999999998 9999999999999999999999977766432 23589999
Q ss_pred ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
|+ ||.+|.+|..|+.|++||+.++..... + +.|.++|..++|+- +|.+|++++.|+. |++||+|+.. ...++.
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~-F--pght~~vk~i~FsE-NGY~Lat~add~~-V~lwDLRKl~-n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAK-F--PGHTGPVKAISFSE-NGYWLATAADDGS-VKLWDLRKLK-NFKTIQ 428 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCcccccc-C--CCCCCceeEEEecc-CceEEEEEecCCe-EEEEEehhhc-ccceee
Confidence 99 899999999999999999999873332 3 44899999999995 9999999999999 9999999844 445544
Q ss_pred c-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEec
Q 040307 253 K-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 253 ~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
. ....+.++.|.+.| ++|+.++.|=.|++++-.+.. +... ....|.+..+.+.|....+++++++.
T Consensus 429 l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~-----------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKS-----------WTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred ccccccceeEEEcCCC-CeEEeecceeEEEEEeccccc-----------ceeeehhhhcccccceeeecccceEEeeccc
Confidence 3 23479999999999 699998766555555543333 1222 33457778999999999998889999
Q ss_pred CCeEEEEeC
Q 040307 331 VNKLQLLKV 339 (339)
Q Consensus 331 d~~v~~w~v 339 (339)
|..++++.+
T Consensus 497 d~~l~~~a~ 505 (506)
T KOG0289|consen 497 DAILRLYAL 505 (506)
T ss_pred hhheEEeec
Confidence 999999864
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1e-30 Score=194.76 Aligned_cols=250 Identities=15% Similarity=0.210 Sum_probs=206.5
Q ss_pred CCCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC
Q 040307 6 EKKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE 84 (339)
Q Consensus 6 ~~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 84 (339)
.++.-+-+|. |.+.|.+...+.+ ..+-|+++ .|=+-+||+ .-++.... .+.|..-|.+++|+.|.
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~n---a~~aasaa----adftakvw~--a~tgdelh----sf~hkhivk~~af~~ds- 112 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKN---ATRAASAA----ADFTAKVWD--AVTGDELH----SFEHKHIVKAVAFSQDS- 112 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCch---hhhhhhhc----ccchhhhhh--hhhhhhhh----hhhhhheeeeEEecccc-
Confidence 4455566776 7889999999988 88888888 799999954 33333332 37899999999999999
Q ss_pred CCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307 85 TLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL 162 (339)
Q Consensus 85 ~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 162 (339)
..|++|+. .++|||++..+ .+...+.+|. +.|..+.|.. ..+.|++++.|++|++||.+++..++++
T Consensus 113 ----~~lltgg~ekllrvfdln~p~-App~E~~ght-----g~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 113 ----NYLLTGGQEKLLRVFDLNRPK-APPKEISGHT-----GGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred ----hhhhccchHHHhhhhhccCCC-CCchhhcCCC-----CcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEE
Confidence 88999984 99999998876 3556778888 9999999995 7888999999999999999999999998
Q ss_pred eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307 163 VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 163 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~ 242 (339)
. ...+|+++.+++...+++....+.|.+||..+-........ ...|.+...+| +...+++|+.|.. ++.||..
T Consensus 182 ~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~----P~nV~SASL~P-~k~~fVaGged~~-~~kfDy~ 254 (334)
T KOG0278|consen 182 E-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM----PCNVESASLHP-KKEFFVAGGEDFK-VYKFDYN 254 (334)
T ss_pred e-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC----ccccccccccC-CCceEEecCcceE-EEEEecc
Confidence 6 56789999999434445555678899999998875544332 36889999999 6689999999998 9999999
Q ss_pred CCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 243 FPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 243 ~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+ +..+.. ..+|.++|.++.|+|+|+ +.++|++||+|+||.+...+
T Consensus 255 T-geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 255 T-GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred C-CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCC
Confidence 8 444555 489999999999999995 99999999999999998877
No 93
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.8e-28 Score=213.42 Aligned_cols=216 Identities=16% Similarity=0.178 Sum_probs=168.2
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe--------eeeeeeccCCc
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI--------LETQLVAHDRE 168 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--------~~~~~~~~~~~ 168 (339)
.+++|+..... .+..+.+|. .+|.+++|+|.++++|++|+.|++|++||+.++. ++..+.+|...
T Consensus 55 vI~L~~~~r~~--~v~~L~gH~-----~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 55 AIRLENQMRKP--PVIKLKGHT-----SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred EEEeeecCCCc--eEEEEcCCC-----CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 78999887654 777888888 8999999999558999999999999999997642 34467789999
Q ss_pred eeEEEecC-Cc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 169 VYDISWGG-FN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 169 v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
|.+++|+| +. +|++++.|+.|++||+++++....+. +...|.+++|+| +|.+|++++.|+. |+|||++. +.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~-IrIwD~Rs-g~ 200 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKH-MHIIDPRK-QE 200 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCE-EEEEECCC-Cc
Confidence 99999994 44 56799999999999999887443332 346799999998 8999999999998 99999998 66
Q ss_pred ceEEEecCCCCeeE-----EEeccCCCCeEEEEeCCC----cEEEEEecCCCCCCCCCCCCCcccceeeeccc---ceeE
Q 040307 247 PVVVLSKHEGSVNG-----ISWAPLYGRRLCSVADDS----RALIWEVVGPGYRSGNGGPSGDVEPELCYQSM---AEIN 314 (339)
Q Consensus 247 ~~~~~~~~~~~v~~-----~~~~p~~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~ 314 (339)
.+..+.+|.+.+.. ..|++++ .+|++++.|+ .|+|||++... .++....+. +.+.
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~------------~pl~~~~ld~~~~~L~ 267 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTT------------SALVTMSIDNASAPLI 267 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCC------------CceEEEEecCCccceE
Confidence 77889999876543 3355887 5888877664 79999999755 245443333 2333
Q ss_pred EEEecCCCCceEEEecCCeEEEEeC
Q 040307 315 VVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 315 ~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..-..+++..+++|+.|+.|++|++
T Consensus 268 p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EeeeCCCCCEEEEEECCCeEEEEEc
Confidence 3333455776778889999999985
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=195.14 Aligned_cols=255 Identities=20% Similarity=0.280 Sum_probs=202.6
Q ss_pred ceeee-eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 9 PGVHT-YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 9 ~~~~~-~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
+.+.+ |.|.++|.++.|+|. ..+|++|+ .|++|++||+.....+-.. .. +....+|.++.|+|.|
T Consensus 163 PvIRTlYDH~devn~l~FHPr---e~ILiS~s----rD~tvKlFDfsK~saKrA~--K~-~qd~~~vrsiSfHPsG---- 228 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPR---ETILISGS----RDNTVKLFDFSKTSAKRAF--KV-FQDTEPVRSISFHPSG---- 228 (430)
T ss_pred ceEeehhhccCcccceeecch---hheEEecc----CCCeEEEEecccHHHHHHH--HH-hhccceeeeEeecCCC----
Confidence 44444 468999999999999 99999999 7999999888765433222 22 4556789999999999
Q ss_pred CCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-c
Q 040307 88 PDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-A 164 (339)
Q Consensus 88 ~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~ 164 (339)
.+|+.|.+ ++++||+++-+ +...-. ....|...|+++.+++ ++++.++++.||.|++||--+++++.++. +
T Consensus 229 -efllvgTdHp~~rlYdv~T~Q--cfvsan--Pd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A 302 (430)
T KOG0640|consen 229 -EFLLVGTDHPTLRLYDVNTYQ--CFVSAN--PDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNA 302 (430)
T ss_pred -ceEEEecCCCceeEEecccee--EeeecC--cccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence 89999997 99999999976 433322 2334459999999998 99999999999999999999999998883 5
Q ss_pred cC-CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC---CCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307 165 HD-REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV---QDCPLLRLEWNKADPRFMATVGMDSNKVVVL 239 (339)
Q Consensus 165 ~~-~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~ 239 (339)
|. ..|.+..|. +++++++.+.|..+++|.+.+++..... .+.+ ....-+...|+- ...+++.-.+..+.+.-|
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y-tGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY-TGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSW 380 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE-ecCCcccchhhhhhhhhcC-ccceEEccccccCceeec
Confidence 55 478899999 9999999999999999999999865543 3321 112234456774 777777766555559999
Q ss_pred ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
|.|+..+....-.+|++.++.+.-||.++ .+.+|+.|-.+++|--+
T Consensus 381 daRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 381 DARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred cccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 99986654445568999999999999996 99999999999999654
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=188.44 Aligned_cols=264 Identities=14% Similarity=0.181 Sum_probs=207.6
Q ss_pred EEEEeeeccccCCeEEEEecCCCC------CcccceeeEe-ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeec
Q 040307 34 RLAVGSFLEDYSNKIELVNFNPET------SDFSADNRLI-FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIH 104 (339)
Q Consensus 34 ~la~g~~~~~~~~~i~i~~~~~~~------~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~ 104 (339)
.+++|+ +...|.-++++.+. ..+...+.+. ..|.+.|++++.+. .++|+|+ | +|+|||+.
T Consensus 3 ~iIvGt----YE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~-------~~~aSGssDetI~IYDm~ 71 (362)
T KOG0294|consen 3 EIIVGT----YEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG-------PYVASGSSDETIHIYDMR 71 (362)
T ss_pred eEEEee----eeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc-------eeEeccCCCCcEEEEecc
Confidence 577888 68888887777554 1121111221 37999999999864 7999998 5 99999999
Q ss_pred CCcceeEEEeecCCCccCCCCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEE
Q 040307 105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDT--RRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFA 181 (339)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 181 (339)
... ....+-.|. +.|+++.|.+ .. +.|++|+.||.|.+|+...-+.+..+++|.+.|+.++.+| +.+-+
T Consensus 72 k~~--qlg~ll~Ha-----gsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLAL 143 (362)
T KOG0294|consen 72 KRK--QLGILLSHA-----GSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLAL 143 (362)
T ss_pred chh--hhcceeccc-----cceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEE
Confidence 876 777777887 9999999986 33 3899999999999999999999999999999999999995 77778
Q ss_pred EEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE
Q 040307 182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI 261 (339)
Q Consensus 182 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 261 (339)
+.+.|+.+++|++-.++........ .....+.|+| .|.+++.+..++ |-+|.+.. ......+.. ...+.++
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~L~----~~at~v~w~~-~Gd~F~v~~~~~--i~i~q~d~-A~v~~~i~~-~~r~l~~ 214 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLNLK----NKATLVSWSP-QGDHFVVSGRNK--IDIYQLDN-ASVFREIEN-PKRILCA 214 (362)
T ss_pred EEcCCceeeeehhhcCccceeeccC----CcceeeEEcC-CCCEEEEEeccE--EEEEeccc-HhHhhhhhc-cccceee
Confidence 9999999999999988744433222 2445599998 889888888876 99998876 333333332 3457777
Q ss_pred EeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe--cCCCCceEEEecCCeEEEEeC
Q 040307 262 SWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW--SPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 262 ~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~p~~~~l~~~~~d~~v~~w~v 339 (339)
.|-..+ .|++|+.|+.|.+||..... .+..+.+|..+|.++.+ .|.+.+|++++.||.|++|++
T Consensus 215 ~~l~~~--~L~vG~d~~~i~~~D~ds~~------------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 215 TFLDGS--ELLVGGDNEWISLKDTDSDT------------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred eecCCc--eEEEecCCceEEEeccCCCc------------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 776554 89999999999999999866 34466789999999884 356778889999999999986
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=9.6e-29 Score=185.85 Aligned_cols=233 Identities=18% Similarity=0.250 Sum_probs=201.6
Q ss_pred eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
..+|+.+++.+.++.+| ++|.+++ | +..+|-..+++ .+.++.+|+ ++|.+++.+- +.+++++|+.
T Consensus 6 l~GHERplTqiKyN~eG-----DLlFscaKD~~~~vw~s~nGe--rlGty~GHt-----GavW~~Did~-~s~~liTGSA 72 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREG-----DLLFSCAKDSTPTVWYSLNGE--RLGTYDGHT-----GAVWCCDIDW-DSKHLITGSA 72 (327)
T ss_pred cccCccccceEEecCCC-----cEEEEecCCCCceEEEecCCc--eeeeecCCC-----ceEEEEEecC-Ccceeeeccc
Confidence 47999999999999999 8999998 5 99999988887 899999999 9999999985 8999999999
Q ss_pred CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-----CCcEEEEECCCCc----ceeeEEeCCCCCCCeE
Q 040307 145 DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-----DCSVRVFDLRDKE----RSTIIYENPVQDCPLL 214 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-----d~~i~i~d~~~~~----~~~~~~~~~~~~~~v~ 214 (339)
|.++++||+++|+.+..++ ...+|..+.|+ .+++++.+.. .+.|.++|++... ....+...+.+...++
T Consensus 73 D~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred cceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 9999999999999999986 56789999999 7777776653 3679999999543 1111222223568899
Q ss_pred EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307 215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN 294 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 294 (339)
.+-|.| -+++|++|..+|. |..||++++.+.+.....|...|+.++++|+. .++++++.|.+-++||..+..
T Consensus 152 ~a~Wg~-l~~~ii~Ghe~G~-is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~----- 223 (327)
T KOG0643|consen 152 SALWGP-LGETIIAGHEDGS-ISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLE----- 223 (327)
T ss_pred eeeecc-cCCEEEEecCCCc-EEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeecccee-----
Confidence 999998 8999999999999 99999999777788888899999999999999 699999999999999999988
Q ss_pred CCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307 295 GGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
.+..+....+|++.+++|....++.++
T Consensus 224 --------v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 224 --------VLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred --------eEEEeeecccccceecccccceEEecC
Confidence 777788889999999999877777554
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.6e-28 Score=185.03 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=192.3
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC--
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-- 144 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 144 (339)
...+.|+++.|+++| .++++++ | .++|||..+++ ...++..++ -.+..++|-. ..+.++.++.
T Consensus 12 ~~~~~i~sl~fs~~G-----~~litss~dDsl~LYd~~~g~--~~~ti~skk-----yG~~~~~Fth-~~~~~i~sStk~ 78 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDG-----LLLITSSEDDSLRLYDSLSGK--QVKTINSKK-----YGVDLACFTH-HSNTVIHSSTKE 78 (311)
T ss_pred cCCCceeEEEecCCC-----CEEEEecCCCeEEEEEcCCCc--eeeEeeccc-----ccccEEEEec-CCceEEEccCCC
Confidence 357789999999999 7777765 4 99999999997 777777766 5677788874 4555555555
Q ss_pred CCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307 145 DTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
|.+|+..++.+.+.++.+.+|...|.+++.+| ++.+++++.|++|++||+|..++...+... .-..++|.| +|
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-----~~pi~AfDp-~G 152 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-----GRPIAAFDP-EG 152 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-----CCcceeECC-CC
Confidence 88999999999999999999999999999994 789999999999999999987766554433 334679998 99
Q ss_pred CeEEEEeeCCCeEEEEecCCC-CCceEEEecC---CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307 224 RFMATVGMDSNKVVVLDIRFP-TNPVVVLSKH---EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG 299 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~-~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 299 (339)
-++|++...+. |++||+|.. ..|..++.-. ....+.+.|||+| +.|+.++..+.+++.|.-.+.
T Consensus 153 LifA~~~~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~---------- 220 (311)
T KOG1446|consen 153 LIFALANGSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGT---------- 220 (311)
T ss_pred cEEEEecCCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCc----------
Confidence 99999888876 999999986 3466665543 5678999999999 699999999999999998887
Q ss_pred cccceeeecc--cc-eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 300 DVEPELCYQS--MA-EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 300 ~~~~~~~~~~--~~-~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.......+ .. --.+..|.|+++++++++.||+|.+|++
T Consensus 221 --~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 221 --VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred --EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 11122222 11 2368899999999999999999999985
No 98
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-30 Score=229.27 Aligned_cols=297 Identities=19% Similarity=0.293 Sum_probs=231.0
Q ss_pred eeEEEeeecCCccc-EEEEeeecc------ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 20 ISTVAWSVRHDRKS-RLAVGSFLE------DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 20 v~~i~~sp~~~~~~-~la~g~~~~------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
-..++|+|+ +. ++|+|+..+ ..+.++.||.++...........-......+.+.|+|.+.++... -+||
T Consensus 9 ta~~awSp~---~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~-GlIa 84 (1049)
T KOG0307|consen 9 TATFAWSPA---SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSH-GLIA 84 (1049)
T ss_pred cceEEecCC---CchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCcc-ceee
Confidence 446799999 65 777776522 235677888777655543221122345567899999999984100 1466
Q ss_pred EeCC--cEEEEeecC----CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--ec
Q 040307 93 TSGD--SLRLWEIHD----DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--VA 164 (339)
Q Consensus 93 ~~~~--~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~ 164 (339)
.|.+ .|.+|+... .+...+.+...|+ ++|..++|++..+++||+|+.||.|.|||++..+.-..+ ..
T Consensus 85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-----G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIANASEEVLATKSKHT-----GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred ccccCCceEEecchhhccCcchHHHhhhcccC-----CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence 6664 999999865 2344566677777 999999999977889999999999999999876533333 23
Q ss_pred cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEe
Q 040307 165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLD 240 (339)
Q Consensus 165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d 240 (339)
..+.|.+++|+ -..+|++++.+|.+.|||+|..+....+.... ....+..++|+|+....|++++.|.. .|.+||
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 45789999999 58899999999999999999997555544432 23568899999988888888887765 699999
Q ss_pred cCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEec
Q 040307 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWS 319 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 319 (339)
+|....+++.+++|...|.++.|++.++.+|++++.|+.|.+|+.++++ .+ .+-.....+..+.|+
T Consensus 239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE-------------vl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-------------VLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred ccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce-------------EeeecCCCCcceeeeeec
Confidence 9998999999999999999999999987899999999999999999987 33 223356789999999
Q ss_pred CCCCceE-EEecCCeEEEEeC
Q 040307 320 PLELDWI-AIAFVNKLQLLKV 339 (339)
Q Consensus 320 p~~~~l~-~~~~d~~v~~w~v 339 (339)
|..+.++ +++.||.|.|+.+
T Consensus 306 pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred CCCcchhhhheeccceeeeee
Confidence 9998766 5679999999864
No 99
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=1e-28 Score=206.14 Aligned_cols=293 Identities=18% Similarity=0.253 Sum_probs=214.2
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccc-ceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS-ADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
+..+..|++......+||.+. ++|.|.+++.....-..+ .....-..|...|..+.|-|.. ..|++++ |
T Consensus 51 pPf~~sFs~~~n~eHiLavad----E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge-----~~lVsasGD 121 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVAD----EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGE-----SLLVSASGD 121 (720)
T ss_pred CCccccccCCCCccceEEEec----CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCc-----eeEEEccCC
Confidence 446688998877788999999 899999966443222211 1001235899999999999944 5666665 5
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe------------------
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI------------------ 157 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~------------------ 157 (339)
++++||+++.+..-...+.+|. ..|.+++|.|.+...|++|+.||.|.|||++...
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~-----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHT-----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred ceeeeeeeccceeecceeecccc-----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 9999999998844444478888 9999999999899999999999999999987421
Q ss_pred ---------eeeeeeccCCce----eEEEecCCcEEEEEeC-CCcEEEEECCCCcceeeEE-----eCCCC---CCCeEE
Q 040307 158 ---------LETQLVAHDREV----YDISWGGFNVFASVSG-DCSVRVFDLRDKERSTIIY-----ENPVQ---DCPLLR 215 (339)
Q Consensus 158 ---------~~~~~~~~~~~v----~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-----~~~~~---~~~v~~ 215 (339)
.+....++...| +.+.|-|...||+++. |+.|++||+|......... ..+.+ ...+.+
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 011112333344 4455558899999988 9999999999876332211 11112 345667
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS 292 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~ 292 (339)
+.... .|.+|++.+.|+. |++|++.... .|+..+.++... -..-..+|++ .+|++|+.|...++|.+....
T Consensus 277 L~lDs-sGt~L~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e--- 350 (720)
T KOG0321|consen 277 LILDS-SGTYLFASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPE--- 350 (720)
T ss_pred EEecC-CCCeEEEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCcc---
Confidence 77775 6788888888999 9999998744 344455444321 1233568998 699999999999999999987
Q ss_pred CCCCCCCcccceeeecccceeEEEEecCCCC-ceEEEecCCeEEEEeC
Q 040307 293 GNGGPSGDVEPELCYQSMAEINVVRWSPLEL-DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~~d~~v~~w~v 339 (339)
..+....+|.-.|++++|.|..- -+++++.|.++++|++
T Consensus 351 --------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 351 --------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred --------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 34567789999999999999643 2778899999999986
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=210.78 Aligned_cols=281 Identities=14% Similarity=0.200 Sum_probs=229.8
Q ss_pred EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccce--eeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-c
Q 040307 22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSAD--NRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-S 97 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~ 97 (339)
++..++. ++++|.+|+ .||.|++|+......+.... ..+ ..|.+.|+.+....++ +-|++++ | +
T Consensus 29 ~Lq~da~--~~ryLfTgG----RDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~-----~tlIS~SsDtT 96 (735)
T KOG0308|consen 29 ALQLDAP--NGRYLFTGG----RDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNG-----KTLISASSDTT 96 (735)
T ss_pred hccccCC--CCceEEecC----CCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCC-----CceEEecCCce
Confidence 4444433 477899999 79999999988766643321 122 5799999999999999 6667666 6 9
Q ss_pred EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee----------eeeee-ccC
Q 040307 98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL----------ETQLV-AHD 166 (339)
Q Consensus 98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~-~~~ 166 (339)
|++|+...+..-+..++..|+ ..|.|+++-..+..++|+|+-|+.|.+||++++.. ...+. ++.
T Consensus 97 VK~W~~~~~~~~c~stir~H~-----DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHK-----DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred EEEeecccCcchhHhhhhccc-----chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 999999887544788899998 89999999333889999999999999999997721 22223 678
Q ss_pred CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
..|++++.+ .+..|++|+..+.+++||.++.+....+. +|...|..+..++ +|..+++++.|++ |++||+.. .
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~d-DGt~~ls~sSDgt-IrlWdLgq-Q 245 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVND-DGTRLLSASSDGT-IRLWDLGQ-Q 245 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcC-CCCeEeecCCCce-EEeeeccc-c
Confidence 899999999 68899999999999999999998666554 3889999999996 9999999999999 99999998 7
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW 325 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 325 (339)
.++.++..|...|+++..+|+- ..+.+|+.||.|..=|+++.. ....+.....+|..+..+.....+
T Consensus 246 rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~------------~~tlick~daPv~~l~~~~~~~~~ 312 (735)
T KOG0308|consen 246 RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPA------------KSTLICKEDAPVLKLHLHEHDNSV 312 (735)
T ss_pred ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCch------------hheEeecCCCchhhhhhccccCCc
Confidence 8899999999999999999998 699999999999999999865 345666667778888777665555
Q ss_pred EEEecCCeEEEEe
Q 040307 326 IAIAFVNKLQLLK 338 (339)
Q Consensus 326 ~~~~~d~~v~~w~ 338 (339)
-++..|+.|+-|.
T Consensus 313 WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 313 WVTTTDSSIKRWK 325 (735)
T ss_pred eeeeccccceecC
Confidence 6677788887775
No 101
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.97 E-value=3.8e-28 Score=184.67 Aligned_cols=291 Identities=19% Similarity=0.312 Sum_probs=222.3
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-----cEEEEe
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-----SLRLWE 102 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-----~i~iw~ 102 (339)
.-.+++|+..-..++.|.+.+++.+...+.. ...+.|.+.|+.++-+|... ++|+++. + .+.||.
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~s--kvf~h~agEvw~las~P~d~----~ilaT~yn~~s~s~vl~~aaiw~ 99 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLS--KVFFHHAGEVWDLASSPFDQ----RILATVYNDTSDSGVLTGAAIWQ 99 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhh--hhhhcCCcceehhhcCCCCC----ceEEEEEeccCCCcceeeEEEEe
Confidence 5577788876667899999999888877665 33367889999999999885 8888863 2 688999
Q ss_pred ecCCc-------ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeee-----eccCCce
Q 040307 103 IHDDR-------TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQL-----VAHDREV 169 (339)
Q Consensus 103 ~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~-----~~~~~~v 169 (339)
+.... .+++..+.. ++.+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+ .++....
T Consensus 100 ipe~~~~S~~~tlE~v~~Ldt----eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~f 173 (370)
T KOG1007|consen 100 IPEPLGQSNSSTLECVASLDT----EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSF 173 (370)
T ss_pred cccccCccccchhhHhhcCCH----HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeeccccccccccee
Confidence 87653 223333331 1126899999999 888888766 88999999987654 3332 2345567
Q ss_pred eEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 170 YDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 170 ~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
++-+|+ +++.+++. .|+++..||+|+..+...+... |...+..+.|+|+...+|++++.|+. |+|||+|+...
T Consensus 174 tsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA--Hgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~ 249 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA--HGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKF 249 (370)
T ss_pred cccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh--hcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCc
Confidence 888898 47777766 5889999999988766665554 67789999999977788999999999 99999999999
Q ss_pred ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC--------CCCC---CCCcccce------eeecc
Q 040307 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS--------GNGG---PSGDVEPE------LCYQS 309 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~--------~~~~---~~~~~~~~------~~~~~ 309 (339)
|+.++.+|...|+++.|+|..+.+|++|+.|..|.+|-...-...+ .+.. .....+|+ ....|
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 9999999999999999999988899999999999999876544211 0000 00111122 33468
Q ss_pred cceeEEEEecCCCCceEE-EecCCeEEEEe
Q 040307 310 MAEINVVRWSPLELDWIA-IAFVNKLQLLK 338 (339)
Q Consensus 310 ~~~i~~~~~~p~~~~l~~-~~~d~~v~~w~ 338 (339)
...|++++||.-.+.++| -+.||.+.|=+
T Consensus 330 EDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred ccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 999999999999998776 58999987744
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.8e-27 Score=172.50 Aligned_cols=248 Identities=20% Similarity=0.301 Sum_probs=201.2
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|.+.|+|.+|||. |+++|+|+ .|.+|++..++.++....-...-..-|.+.|..++|..+.+ ....+|++++
T Consensus 88 hkgsiyc~~ws~~---geliatgs----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~-s~~~il~s~g 159 (350)
T KOG0641|consen 88 HKGSIYCTAWSPC---GELIATGS----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE-SGGAILASAG 159 (350)
T ss_pred cCccEEEEEecCc---cCeEEecC----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-cCceEEEecC
Confidence 5789999999999 99999999 69999998888766544321111146999999999976543 1226888876
Q ss_pred --C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec--c-----
Q 040307 96 --D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA--H----- 165 (339)
Q Consensus 96 --~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~----- 165 (339)
| .|++-|...++ ....+.+|+ +.|.++- + .++-+|++|+.|.+|++||++-..++.++.. |
T Consensus 160 agdc~iy~tdc~~g~--~~~a~sght-----ghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQ--GFHALSGHT-----GHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred CCcceEEEeecCCCC--cceeecCCc-----ccEEEEE-E-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 4 77777877776 888889988 8887763 2 2679999999999999999998888777632 2
Q ss_pred CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
.+.|.+++.. .+.+|++|-.|....+||+|.++....+ .. |...|.++.|+| ...++++++.|.. |++-|+...
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f-~p--hsadir~vrfsp-~a~yllt~syd~~-ikltdlqgd 305 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF-HP--HSADIRCVRFSP-GAHYLLTCSYDMK-IKLTDLQGD 305 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee-CC--CccceeEEEeCC-CceEEEEecccce-EEEeecccc
Confidence 2568888888 5999999999999999999999855543 33 678999999999 9999999999999 999998742
Q ss_pred ---CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 245 ---TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 245 ---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
.-++..+..|+..+..+.|+|.. .-+++.+.|.++.+|-+.
T Consensus 306 la~el~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LAHELPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred hhhcCceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence 24566677899999999999998 689999999999999764
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=195.56 Aligned_cols=238 Identities=19% Similarity=0.242 Sum_probs=203.8
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~ 149 (339)
..+.++...|.. ..+.+|+ | .+.++|...++ .+.++++|. ..|+.+.++| +...+++++.|..|+
T Consensus 220 pgi~ald~~~s~-----~~ilTGG~d~~av~~d~~s~q--~l~~~~Gh~-----kki~~v~~~~-~~~~v~~aSad~~i~ 286 (506)
T KOG0289|consen 220 PGITALDIIPSS-----SKILTGGEDKTAVLFDKPSNQ--ILATLKGHT-----KKITSVKFHK-DLDTVITASADEIIR 286 (506)
T ss_pred CCeeEEeecCCC-----CcceecCCCCceEEEecchhh--hhhhccCcc-----eEEEEEEecc-chhheeecCCcceEE
Confidence 457888888875 6778887 6 99999999887 888999998 8999999998 999999999999999
Q ss_pred EEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307 150 IWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 150 i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
||.............|..+|+.+..+ .+++|++++.|++..+.|++++......... ..+..+++.+|+| +|.+|.+
T Consensus 287 vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgt 364 (506)
T KOG0289|consen 287 VWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGT 364 (506)
T ss_pred eeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC-CceEEec
Confidence 99998777777788999999999999 7999999999999999999999866655442 2345789999999 9999999
Q ss_pred EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec
Q 040307 229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ 308 (339)
Q Consensus 229 ~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 308 (339)
|..|+. ++|||+.. ...+..+.+|.++|..++|+.+| ++|+++.+|+.|++||++... ..+.+. ..
T Consensus 365 gt~d~~-vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~----------n~kt~~-l~ 430 (506)
T KOG0289|consen 365 GTPDGV-VKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK----------NFKTIQ-LD 430 (506)
T ss_pred cCCCce-EEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc----------ccceee-cc
Confidence 999998 99999998 44788999999999999999999 899999999999999999977 111112 22
Q ss_pred ccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 309 SMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
....|.++.|.+.|.+|++++.|=.|++++
T Consensus 431 ~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 431 EKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 334799999999999998887666665543
No 104
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.7e-30 Score=204.24 Aligned_cols=240 Identities=20% Similarity=0.239 Sum_probs=203.1
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..|.+.|..+.|-++. ..|++|+ | .|++|++...+.....++.+.. ++|+.+.|.+ ++.++++++.|
T Consensus 172 d~h~gev~~v~~l~~s-----dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-----g~it~~d~d~-~~~~~iAas~d 240 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNS-----DTLATGGSDRIIKLWNVLGEKSELISTLAGSL-----GNITSIDFDS-DNKHVIAASND 240 (459)
T ss_pred hccccccceeEEccCc-----chhhhcchhhhhhhhhcccchhhhhhhhhccC-----CCcceeeecC-CCceEEeecCC
Confidence 4689999999999998 7888887 6 9999999888767778888776 8999999997 89999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
+.+++|++...+...++.+|.+.|+++.|. ....+++|+.|.+|++||+....+....+.. ..+..|..+ ..
T Consensus 241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~---~~ 313 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCS---IS 313 (459)
T ss_pred Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc----ccccceEec---ce
Confidence 999999999999999999999999999999 4555999999999999999997765555443 456666654 57
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
.+++|..|++ |++||.+. ..+...+..+. .|+++..++++ ..|++++.|.++.+.|+++.+ ...+.
T Consensus 314 ~~~SgH~Dkk-vRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~e----------I~~~~ 379 (459)
T KOG0288|consen 314 DVISGHFDKK-VRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKE----------IRQTF 379 (459)
T ss_pred eeeecccccc-eEEEeccC-CceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccccc----------EEEEe
Confidence 8899999999 99999998 56677777754 99999999999 688888999999999999987 11122
Q ss_pred e--eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 L--CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 ~--~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
. -+......+.+.|||++.|++||+.||.|+||++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 1 1123445899999999999999999999999985
No 105
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.6e-28 Score=182.94 Aligned_cols=237 Identities=16% Similarity=0.207 Sum_probs=200.5
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|...|.+++|+.+| ..||+|+ | ++.+|+++..+........+|. ..|-.++|+|....+|++++.|
T Consensus 17 ~~~~~~v~Sv~wn~~g-----~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~-----~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDG-----TKLASGSFDKTVSVWNLERDRFRKELVYRGHT-----DSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred hhhhhcceEEEEcccC-----ceeeecccCCceEEEEecchhhhhhhcccCCC-----cchhhheeCCCCCcceEEecCC
Confidence 5788999999999999 8999988 6 9999999887644444555666 8899999999899999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
.+|++||++++++...+....+.+ -+.|+ ++++++.++.|..|...|.++.+...... ....+.-++|+ .+++
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~----~~~e~ne~~w~-~~nd 160 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ----FKFEVNEISWN-NSND 160 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc----ccceeeeeeec-CCCC
Confidence 999999999999998886544444 56788 89999999999999999999887443322 23577889999 4777
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
+++.....|. |.|..... -+|+..+++|.....+|.|+|+| ++||+|+.|..+.+||++..- +.
T Consensus 161 ~Fflt~GlG~-v~ILsyps-Lkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi-------------C~ 224 (313)
T KOG1407|consen 161 LFFLTNGLGC-VEILSYPS-LKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI-------------CE 224 (313)
T ss_pred EEEEecCCce-EEEEeccc-cccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh-------------hh
Confidence 7777666677 99998876 67899999999999999999999 799999999999999999876 44
Q ss_pred -eeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 305 -LCYQSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 305 -~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
.+..+.-+|..+.||.+|++|++++.|..|-|
T Consensus 225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred eeeccccCceEEEEeccCcceeeccCccceEEe
Confidence 55578889999999999999999999987754
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.4e-29 Score=183.85 Aligned_cols=253 Identities=17% Similarity=0.217 Sum_probs=202.6
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC-cccceeeEeecCCCCceEEEEcC--CCCCCCCC
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS-DFSADNRLIFDHPYTPTNIAFFP--SEETLNPD 89 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~--~~~~~~~~ 89 (339)
...|.+-|.++...-. |++||+++ .|++|+|+....... .... .+ .+|.++|..++|.. .| .
T Consensus 7 dt~H~D~IHda~lDyy---gkrlATcs----SD~tVkIf~v~~n~~s~ll~--~L-~Gh~GPVwqv~wahPk~G-----~ 71 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYY---GKRLATCS----SDGTVKIFEVRNNGQSKLLA--EL-TGHSGPVWKVAWAHPKFG-----T 71 (299)
T ss_pred hhhhhhhhhHhhhhhh---cceeeeec----CCccEEEEEEcCCCCceeee--Ee-cCCCCCeeEEeecccccC-----c
Confidence 3457788888888888 99999999 899999988776665 2222 33 79999999999987 67 8
Q ss_pred eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCC-e--eeeeee
Q 040307 90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD-TRRVATCSVDTTCVIWDIDRE-I--LETQLV 163 (339)
Q Consensus 90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~-~--~~~~~~ 163 (339)
+||+++ | .|.||.-.++++........|. ..|++++|.|++ +-.|++++.||.|.|.+.+.. . ..+...
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~-----~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHS-----ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhc-----ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 999998 6 9999999999877777778887 999999999853 457889999999999998765 2 233456
Q ss_pred ccCCceeEEEecC----C-----------cEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCC---C
Q 040307 164 AHDREVYDISWGG----F-----------NVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADP---R 224 (339)
Q Consensus 164 ~~~~~v~~~~~~~----~-----------~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~---~ 224 (339)
.|.-.|++++|.| + ..|++|+.|..|+||+....+-.. ..+. .|...|+.++|.|..+ .
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~gl~~s 224 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSVGLPKS 224 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh--hcchhhhhhhhccccCCCce
Confidence 8999999999983 3 569999999999999998864221 2233 4889999999999543 5
Q ss_pred eEEEEeeCCCeEEEEecCCCCCce--EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPV--VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+||+++.|++ +.||-.+....+- ..+......++.+.||+.| .+|+.++.|+.|.+|.-....
T Consensus 225 ~iAS~SqDg~-viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 225 TIASCSQDGT-VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred eeEEecCCCc-EEEEEecCccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCCCC
Confidence 8999999999 9999877532222 2233345689999999999 699999999999999876654
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=181.59 Aligned_cols=240 Identities=14% Similarity=0.233 Sum_probs=182.7
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCC-cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDD-RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
...++.|.+|+|||... .++++++ | +||+|+++.. .... +....|. ++|.+++|+. ++..+++|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~----~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~-----~PvL~v~Wsd-dgskVf~g~~ 92 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQAD----NLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHD-----GPVLDVCWSD-DGSKVFSGGC 92 (347)
T ss_pred CCcccchheeEeccccC----ceEEecccCCceEEEEEecCCcccc-hhhhccC-----CCeEEEEEcc-CCceEEeecc
Confidence 45678899999999652 5565665 6 9999999884 3222 3344455 8999999995 9999999999
Q ss_pred CCeEEEEECCCCeeeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307 145 DTTCVIWDIDREILETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
|+.+++||+.+++ ..++..|.++|..+.|- . -..|++|+.|.+|+.||+|.......+... ..+.++..
T Consensus 93 Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP----eRvYa~Dv--- 164 (347)
T KOG0647|consen 93 DKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP----ERVYAADV--- 164 (347)
T ss_pred CCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc----ceeeehhc---
Confidence 9999999999995 55667899999999998 3 348999999999999999988755554433 46666654
Q ss_pred CCCeEEEEeeCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
...+++++..+.. |.+|+++.+......... -+-.+++|+..++.+ ..+.|+-+|.+.|..+.....
T Consensus 165 ~~pm~vVata~r~-i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~---------- 232 (347)
T KOG0647|consen 165 LYPMAVVATAERH-IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNP---------- 232 (347)
T ss_pred cCceeEEEecCCc-EEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCc----------
Confidence 3357777778887 999999864433222221 234688999999985 669999999999999988640
Q ss_pred ccceeeeccc---------ceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 301 VEPELCYQSM---------AEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 301 ~~~~~~~~~~---------~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
...+.+.-|. -.|++|+|+|....|+++|.||++.+|+
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 0122222222 3588999999888899999999999997
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.2e-27 Score=180.09 Aligned_cols=243 Identities=16% Similarity=0.240 Sum_probs=195.0
Q ss_pred eeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 11 VHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 11 ~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
+..|. |..+|+++|.+ +.++|+|+ .|.+|+|||+......-.. ..|.+.|+++.|.+.... .
T Consensus 36 lF~~~aH~~sitavAVs-----~~~~aSGs----sDetI~IYDm~k~~qlg~l-----l~HagsitaL~F~~~~S~---s 98 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS-----GPYVASGS----SDETIHIYDMRKRKQLGIL-----LSHAGSITALKFYPPLSK---S 98 (362)
T ss_pred cccccccccceeEEEec-----ceeEeccC----CCCcEEEEeccchhhhcce-----eccccceEEEEecCCcch---h
Confidence 44443 67899999987 45999999 7999999887765433332 689999999999998721 2
Q ss_pred eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC
Q 040307 90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 167 (339)
.|++|+ | .|.+|+...- +++.+++.|+ ..|+.++.+| .+++-++.+.|+.++.||+-+++.-..++ -..
T Consensus 99 hLlS~sdDG~i~iw~~~~W--~~~~slK~H~-----~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~ 169 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSW--ELLKSLKAHK-----GQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKN 169 (362)
T ss_pred heeeecCCCcEEEEEcCCe--EEeeeecccc-----cccceeEecC-CCceEEEEcCCceeeeehhhcCccceeec-cCC
Confidence 677776 4 9999998765 4999999999 8899999999 99999999999999999998887554443 222
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
..+.+.|+ .|.+|+.++.+ .|-+|.+........+.. +..+.++.|. ++..|++|+.++. |.+||... ..
T Consensus 170 ~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~l--~~~~L~vG~d~~~-i~~~D~ds-~~ 240 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN----PKRILCATFL--DGSELLVGGDNEW-ISLKDTDS-DT 240 (362)
T ss_pred cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc----cccceeeeec--CCceEEEecCCce-EEEeccCC-Cc
Confidence 34559999 68888888766 588999887663333222 2457777775 8899999999998 99999987 78
Q ss_pred ceEEEecCCCCeeEEEe--ccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 247 PVVVLSKHEGSVNGISW--APLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+...+.+|..+|.++.+ .|++ .+|+|++.||.|++||++...
T Consensus 241 ~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 241 PLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred cceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccc
Confidence 89999999999999985 3556 699999999999999999875
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=8.4e-27 Score=200.27 Aligned_cols=295 Identities=14% Similarity=0.162 Sum_probs=230.8
Q ss_pred CCceeeeeecc-CCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC
Q 040307 7 KKPGVHTYMAQ-WPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE 84 (339)
Q Consensus 7 ~~~~~~~~~~~-~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 84 (339)
..+.+.+|+++ ++|++++|.-| |. .||+|+ ..|.+.+||++........ .-.|.+.|..+.|.|..
T Consensus 233 ~dkil~sFk~d~g~VtslSFrtD---G~p~las~~----~~G~m~~wDLe~kkl~~v~----~nah~~sv~~~~fl~~e- 300 (910)
T KOG1539|consen 233 FDKILMSFKQDWGRVTSLSFRTD---GNPLLASGR----SNGDMAFWDLEKKKLINVT----RNAHYGSVTGATFLPGE- 300 (910)
T ss_pred cCcEEEEEEccccceeEEEeccC---CCeeEEecc----CCceEEEEEcCCCeeeeee----eccccCCcccceecCCC-
Confidence 46788999996 89999999999 65 566666 6899999888765443332 35788999999999998
Q ss_pred CCCCCeEEEeC-C-cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----
Q 040307 85 TLNPDIVATSG-D-SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE---- 156 (339)
Q Consensus 85 ~~~~~~la~~~-~-~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---- 156 (339)
.++++++ | .+++|-.++ +..+.++.-.+|. .|..++.|...++..+.+++.|++.+.+++...
T Consensus 301 ----pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs-----~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 301 ----PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS-----APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred ----ceEeeccCCCceeEEEeeCCCCcchheeeccCCC-----CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 7888877 5 666665554 4345666666777 888899987557888888888887776654320
Q ss_pred -------------------------------------------------------------ee-eeeee-----ccCCce
Q 040307 157 -------------------------------------------------------------IL-ETQLV-----AHDREV 169 (339)
Q Consensus 157 -------------------------------------------------------------~~-~~~~~-----~~~~~v 169 (339)
.. ...+. .....+
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 00 00010 012456
Q ss_pred eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC---
Q 040307 170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT--- 245 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~--- 245 (339)
++++.+ -|++.+.|...|.|-+|++.++-....+...+.|+.+|+.++... .++.+++++.+|- +.+||.....
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gi-lkfw~f~~k~l~~ 529 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGI-LKFWDFKKKVLKK 529 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcce-EEEEecCCcceee
Confidence 777777 589999999999999999999987777666677999999999984 8889999999998 9999987632
Q ss_pred -------------------------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 246 -------------------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 246 -------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
+.++.+.+|...|++++||||| ++|++++.|++|++||+.+.
T Consensus 530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCc
Confidence 1233456899999999999999 79999999999999999998
Q ss_pred CCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC-CeEEEEe
Q 040307 289 GYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV-NKLQLLK 338 (339)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d-~~v~~w~ 338 (339)
. .+-......+.+++.|+|+|.+|+++..| +.|.+|-
T Consensus 609 ~-------------lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 609 T-------------LIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred c-------------eeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 8 55556667889999999999999988877 7899994
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6e-28 Score=186.11 Aligned_cols=239 Identities=20% Similarity=0.272 Sum_probs=207.5
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|+.++-.... .++.+++ | +.+||.++++. ++.++.+|. +.|+++.|++ .+.++++++.|
T Consensus 145 ~GHkDGiW~Vaa~~tq-----pi~gtASADhTA~iWs~Esg~--CL~~Y~GH~-----GSVNsikfh~-s~~L~lTaSGD 211 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQ-----PICGTASADHTARIWSLESGA--CLATYTGHT-----GSVNSIKFHN-SGLLLLTASGD 211 (481)
T ss_pred cccccceeeehhhcCC-----cceeecccccceeEEeecccc--ceeeecccc-----cceeeEEecc-ccceEEEccCC
Confidence 6899999999987766 6888887 6 99999999998 999999999 9999999998 99999999999
Q ss_pred CeEEEEEC------CCC----------------------------------eeeeeeeccCCceeEEEec-CCcEEEEEe
Q 040307 146 TTCVIWDI------DRE----------------------------------ILETQLVAHDREVYDISWG-GFNVFASVS 184 (339)
Q Consensus 146 ~~v~i~d~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 184 (339)
++-.||.. ... .++..+.+|.+.|.+..|- .++.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999972 110 2566778899999999998 899999999
Q ss_pred CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307 185 GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA 264 (339)
Q Consensus 185 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 264 (339)
.|.+..+||+.++..... ..+ |+...+.++-+| ..+++++.+.|.+ .++||.+..-..+..+++|...|+++.|.
T Consensus 292 WDRTAnlwDVEtge~v~~-LtG--Hd~ELtHcstHp-tQrLVvTsSrDtT-FRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVNI-LTG--HDSELTHCSTHP-TQRLVVTSSRDTT-FRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred ccccceeeeeccCceecc-ccC--cchhccccccCC-cceEEEEeccCce-eEeccchhhcceeeeecccccceeEEEEe
Confidence 999999999999984443 333 778899999998 8899999999999 99999997666788999999999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEE-ecCCeEEEEeC
Q 040307 265 PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAI-AFVNKLQLLKV 339 (339)
Q Consensus 265 p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~d~~v~~w~v 339 (339)
.+. .+++|+.|.+|++||+++.. .|+.......+++.++.+..++ +++. -.+..||+|++
T Consensus 367 ~dd--~vVSgSDDrTvKvWdLrNMR------------splATIRtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 367 TDD--RVVSGSDDRTVKVWDLRNMR------------SPLATIRTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDL 427 (481)
T ss_pred cCC--ceeecCCCceEEEeeecccc------------CcceeeecCCccceeEeecCCc-eEEeccCCceEEEEec
Confidence 986 69999999999999999987 5777778888999999998887 5554 56667999985
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=178.86 Aligned_cols=291 Identities=15% Similarity=0.172 Sum_probs=209.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccc--eeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA--DNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
|.+.|++++|+.| |++||+++ .|+.|+||+.+.-...... ...++.+ ..+.+.|.||.+ .++++
T Consensus 85 H~~~vt~~~FsSd---GK~lat~~----~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~----s~vv~ 150 (420)
T KOG2096|consen 85 HKKEVTDVAFSSD---GKKLATIS----GDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCK----SVVVS 150 (420)
T ss_pred cCCceeeeEEcCC---CceeEEEe----CCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcc----eEEEE
Confidence 5689999999999 99999999 7999999987643222111 0122233 457889999995 45555
Q ss_pred eC-C-cEEEEeecCCc---cee-EEEeec-CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 94 SG-D-SLRLWEIHDDR---TEL-KSLLNS-NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~---~~~-~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
.- + ++++|.+...+ ... ...... |-.+.|...+..+-... ++.+|++++.|..|.+|+++ |+.+..+....
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 43 3 99999876543 000 001111 11222336677777764 88999999999999999998 88888887666
Q ss_pred CceeEEEec-CCcEEEEEeCCCcEEEEECCCCc-----ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKE-----RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
..-+..+.+ +|.++++++...-|++|.+--.+ .....+...+|+..|..++|+| +...+++.+.||. ++|||
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~-wriwd 306 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGK-WRIWD 306 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCc-EEEee
Confidence 667778889 79999999999999999874332 3344455567999999999997 8899999999999 99999
Q ss_pred cCCCC------CceEEE----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc
Q 040307 241 IRFPT------NPVVVL----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM 310 (339)
Q Consensus 241 ~~~~~------~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (339)
+.-.. +.+... ..-.+.-..++.+|.| ..||.+. ...+++|..+.++ ..+.....|.
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~-----------~~~~~e~~h~ 373 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGK-----------DYPELEDIHS 373 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCc-----------cchhHHHhhc
Confidence 85311 112211 1112233489999999 4666554 4689999999877 2344556789
Q ss_pred ceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 311 AEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 311 ~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
..|.+++|+++|+ .++.+.|..+++++
T Consensus 374 ~~Is~is~~~~g~-~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 374 TTISSISYSSDGK-YIATCGDRYVRVIR 400 (420)
T ss_pred CceeeEEecCCCc-EEeeecceeeeeec
Confidence 9999999999997 56777788888764
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=190.81 Aligned_cols=252 Identities=15% Similarity=0.173 Sum_probs=204.9
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--CcEEEEeecCCcce
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--DSLRLWEIHDDRTE 109 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--~~i~iw~~~~~~~~ 109 (339)
+.+++++.. ....|.+|.+......... .--+++|.+++-+|.| .+|+.|+ +.+++|.+.++.
T Consensus 50 ~~yllsaq~---~rp~l~vw~i~k~~~~~q~-----~v~Pg~v~al~s~n~G-----~~l~ag~i~g~lYlWelssG~-- 114 (476)
T KOG0646|consen 50 NEYLLSAQL---KRPLLHVWEILKKDQVVQY-----IVLPGPVHALASSNLG-----YFLLAGTISGNLYLWELSSGI-- 114 (476)
T ss_pred hhheeeecc---cCccccccccCchhhhhhh-----cccccceeeeecCCCc-----eEEEeecccCcEEEEEecccc--
Confidence 346666664 5668889887765544422 4567899999999999 8888885 399999999998
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC---------CCeeeeeeeccCCceeEEEecC---C
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID---------REILETQLVAHDREVYDISWGG---F 177 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~---------~~~~~~~~~~~~~~v~~~~~~~---~ 177 (339)
.+..+..|- .+|+++.|+- |+.+|++|+.||.|.+|.+. +.+++..+..|.-+|+++.... .
T Consensus 115 LL~v~~aHY-----Q~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 115 LLNVLSAHY-----QSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTN 188 (476)
T ss_pred HHHHHHhhc-----cceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCcc
Confidence 777788887 8999999995 99999999999999999873 2357888889999999999883 5
Q ss_pred cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC------------
Q 040307 178 NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT------------ 245 (339)
Q Consensus 178 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~------------ 245 (339)
..+++++.|.++++||+..+.....+... ..+.+++.+| .+..+++|+.+|. |.+.++....
T Consensus 189 ~rl~TaS~D~t~k~wdlS~g~LLlti~fp----~si~av~lDp-ae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 189 ARLYTASEDRTIKLWDLSLGVLLLTITFP----SSIKAVALDP-AERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred ceEEEecCCceEEEEEeccceeeEEEecC----CcceeEEEcc-cccEEEecCCcce-EEeeehhcCCcccccccccccc
Confidence 79999999999999999999765554443 6899999999 8899999999998 8888775422
Q ss_pred ---CceEEEecCCC--CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEEEEec
Q 040307 246 ---NPVVVLSKHEG--SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINVVRWS 319 (339)
Q Consensus 246 ---~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 319 (339)
..+..+.+|.+ .|++++.+-|| .+|++|+.||.|+|||+...+ .+.... ..++|+.+.+.
T Consensus 263 ~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q-------------~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 263 EENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ-------------CIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred cccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH-------------HHHHHhhhccccceeEee
Confidence 23455678888 99999999999 699999999999999999877 443333 56788888886
Q ss_pred CCCCc
Q 040307 320 PLELD 324 (339)
Q Consensus 320 p~~~~ 324 (339)
|-.+.
T Consensus 329 ~~~~~ 333 (476)
T KOG0646|consen 329 PLERG 333 (476)
T ss_pred ccccc
Confidence 65443
No 113
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-26 Score=177.51 Aligned_cols=256 Identities=18% Similarity=0.298 Sum_probs=201.1
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.+-|.++.|.+. |+++|+++ .|++|+||+.+.+++.+...... ..|.+.|..+.|.+-.-+ +++|++
T Consensus 11 ~h~DlihdVs~D~~---GRRmAtCS----sDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfG---qvvA~c 79 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFY---GRRMATCS----SDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFG---QVVATC 79 (361)
T ss_pred CCcceeeeeeeccc---Cceeeecc----CCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCcccc---ceEEEE
Confidence 46688999999999 99999999 89999999998888888875555 589999999999764322 899999
Q ss_pred C-C-cEEEEeecCC-------cceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeee-----
Q 040307 95 G-D-SLRLWEIHDD-------RTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREILE----- 159 (339)
Q Consensus 95 ~-~-~i~iw~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~----- 159 (339)
+ | ++.||.-... ++....++...+ ..|+++.|.|. -|-.+|+++.||.++||+....-.+
T Consensus 80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr-----ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR-----SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred ecCCceeeeeecccccccccceeEEEEEeecCC-----cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 8 6 9999986322 244556666666 89999999984 4668999999999999987654221
Q ss_pred -eeee-------ccCCceeEEEecC----CcEEEEEeCC-----CcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecC
Q 040307 160 -TQLV-------AHDREVYDISWGG----FNVFASVSGD-----CSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 160 -~~~~-------~~~~~v~~~~~~~----~~~l~~~~~d-----~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
..++ .+..+..|+.|++ ..+|+.|+.+ +.++||...... +....-+.+.+..+|++++|.|.
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 1122 3556788999983 5577877765 478999877665 44555555678999999999996
Q ss_pred CCC---eEEEEeeCCCeEEEEecCCCC-------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307 222 DPR---FMATVGMDSNKVVVLDIRFPT-------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR 279 (339)
Q Consensus 222 ~~~---~l~~~~~d~~~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 279 (339)
-|+ +||+++.|| |+||.++... +.+..+..|++.|+.+.|+-.| ..|++.+.||.
T Consensus 235 ~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~ 311 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGC 311 (361)
T ss_pred cCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCce
Confidence 654 788899988 9999987311 2344567899999999999999 69999999999
Q ss_pred EEEEEecCCC
Q 040307 280 ALIWEVVGPG 289 (339)
Q Consensus 280 v~iwd~~~~~ 289 (339)
|++|......
T Consensus 312 VRLWkany~n 321 (361)
T KOG2445|consen 312 VRLWKANYNN 321 (361)
T ss_pred eeehhhhhhh
Confidence 9999877655
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-26 Score=176.59 Aligned_cols=260 Identities=22% Similarity=0.267 Sum_probs=193.8
Q ss_pred eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEc-CCCCCEEEE
Q 040307 67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWA-GFDTRRVAT 141 (339)
Q Consensus 67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~ 141 (339)
..+|.+-|+++.|.+.| +.+|+|+ | +++|||.+.. .+.+....+.|. +.|..+.|. |.-|+.+|+
T Consensus 9 ~s~h~DlihdVs~D~~G-----RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~-----~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYG-----RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD-----GSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred ccCCcceeeeeeecccC-----ceeeeccCCCcEEEEeccCCCCceEEeeeEEecC-----CcEEEEEecCccccceEEE
Confidence 36889999999999999 7888887 6 9999997544 366777888888 999999996 446889999
Q ss_pred EeCCCeEEEEECCCC---------eeeeeeeccCCceeEEEecC---CcEEEEEeCCCcEEEEECCCCcceee-------
Q 040307 142 CSVDTTCVIWDIDRE---------ILETQLVAHDREVYDISWGG---FNVFASVSGDCSVRVFDLRDKERSTI------- 202 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~------- 202 (339)
++.|+++.||.-... ....++......|++++|.| |-.+++++.||.+|||+.-.......
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 999999999975211 13445566678899999994 77899999999999999766532111
Q ss_pred ---EEeCCCCCCCeEEEEEecC--CCCeEEEEeeC-----CCeEEEEecCCCC---CceEEEecCCCCeeEEEeccCCC-
Q 040307 203 ---IYENPVQDCPLLRLEWNKA--DPRFMATVGMD-----SNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPLYG- 268 (339)
Q Consensus 203 ---~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~d-----~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~- 268 (339)
......+..+..|+.|+|. ...+||+|+.+ +. ++||...... ..+.++.+|..+|+.++|.|+-.
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 1111224567789999973 24578888777 24 8899776544 34567789999999999999732
Q ss_pred --CeEEEEeCCCcEEEEEecCCCCCC---CCCCCC--Ccccc--e-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 269 --RRLCSVADDSRALIWEVVGPGYRS---GNGGPS--GDVEP--E-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 269 --~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~--~~~~~--~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.+||+++.|| |+||++......- +...+. ..++. + ....|.+.|..+.|+-.|..|.++|.||.||+|+
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 4799999999 9999998643100 000111 11111 1 2346899999999999998777899999999997
No 115
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.3e-27 Score=197.77 Aligned_cols=300 Identities=15% Similarity=0.172 Sum_probs=229.3
Q ss_pred CCCceeeeeeccCCeeEEEeee-cCC-------cccEEEEeeeccccCCeEEEEecCCCCCccccee-------------
Q 040307 6 EKKPGVHTYMAQWPISTVAWSV-RHD-------RKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN------------- 64 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~i~~sp-~~~-------~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~------------- 64 (339)
..++.-.-+.|...|..+.--| +-. ....+.+++ .|++|++|+++.-...-....
T Consensus 358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS----sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~ 433 (1080)
T KOG1408|consen 358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS----SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE 433 (1080)
T ss_pred cccceeeeeeccceeeeeccccccccCcccccCCccceeEec----CCCcEEEeecccccccceeecccchhhhhcCccc
Confidence 3345455556777777776666 110 123466777 699999998765211100000
Q ss_pred -------------------eEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCC
Q 040307 65 -------------------RLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFS 123 (339)
Q Consensus 65 -------------------~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~ 123 (339)
.-..+....+.+++.+|++ +.||+|.. .++||++.+-+ ....++.|.
T Consensus 434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-----qhLAsGDr~GnlrVy~Lq~l~--~~~~~eAHe----- 501 (1080)
T KOG1408|consen 434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-----QHLASGDRGGNLRVYDLQELE--YTCFMEAHE----- 501 (1080)
T ss_pred cCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-----ceecccCccCceEEEEehhhh--hhhheeccc-----
Confidence 0011234568999999999 99999974 99999998876 667788888
Q ss_pred CCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCC-eeeeeeeccCCceeEEEec-CC--cEEEEEeCCCcEEEEECCCC
Q 040307 124 SAITSFDWAGF--DTRRVATCSVDTTCVIWDIDRE-ILETQLVAHDREVYDISWG-GF--NVFASVSGDCSVRVFDLRDK 197 (339)
Q Consensus 124 ~~i~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~-~~--~~l~~~~~d~~i~i~d~~~~ 197 (339)
..|.|+.|+-. ..++||+++.|..|+|||.... .+++++.+|...|+++.|. .+ ..+++++.|+.|. |+....
T Consensus 502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk 580 (1080)
T KOG1408|consen 502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQK 580 (1080)
T ss_pred ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhcc
Confidence 99999999842 3578999999999999998554 4677889999999999998 43 6889999998765 444332
Q ss_pred cceeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---CCCCeeEEEeccCCCCeE
Q 040307 198 ERSTIIYENP---VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---HEGSVNGISWAPLYGRRL 271 (339)
Q Consensus 198 ~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l 271 (339)
.....++... ..+..++.++..| +.+++++++.|.+ |+|||+.. ++..+.+++ |.+....+...|.| .+|
T Consensus 581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrn-irif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg-iY~ 656 (1080)
T KOG1408|consen 581 ASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRN-IRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG-IYL 656 (1080)
T ss_pred ccCceeccccccccccceEEEeeeCC-CcceEEEEecccc-eEEEeccc-cceeeeecccccCCCceEEEEECCCc-cEE
Confidence 2111222111 1235788999998 8899999999999 99999998 666777764 66788899999999 799
Q ss_pred EEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 272 CSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 272 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
++...|.++.++|+..++ +. ..++|...|+.+.|.+|.++|++++.||.|.||++
T Consensus 657 atScsdktl~~~Df~sgE-------------cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVSGE-------------CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred EEeecCCceEEEEeccch-------------hhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 999999999999999988 44 67799999999999999999999999999999986
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=8e-27 Score=196.64 Aligned_cols=271 Identities=14% Similarity=0.144 Sum_probs=214.7
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceE-EEEcCCCCCCCCCeEEE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTN-IAFFPSEETLNPDIVAT 93 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~~~~~~la~ 93 (339)
.|...|..++..+. . .++.++ .|+++++|. ...........+ .+|.+-|.. +++.+..+ -.+++
T Consensus 12 gH~~DVr~v~~~~~---~-~i~s~s----Rd~t~~vw~--~~~~~~l~~~~~-~~~~g~i~~~i~y~e~~~----~~l~~ 76 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDG---V-CIISGS----RDGTVKVWA--KKGKQYLETHAF-EGPKGFIANSICYAESDK----GRLVV 76 (745)
T ss_pred cCccchheeEecCC---e-EEeecC----CCCceeeee--ccCcccccceec-ccCcceeeccceeccccC----cceEe
Confidence 36778888887776 4 677777 699999954 444444432233 456666666 77776331 34566
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
|+ | .+.+|...... +..++.+|+ ..|.++.... ++. +++|+.|.++++|.. +++...+.+|...|+.
T Consensus 77 g~~D~~i~v~~~~~~~--P~~~LkgH~-----snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAE--PLYTLKGHK-----SNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred ecccceEEEEecCCCC--chhhhhccc-----cceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 65 6 99999998887 999999999 9999998763 444 999999999999986 4566678999999999
Q ss_pred EEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 172 ISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 172 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
+..-+.+.++||+.|.+|++|.-.+ ....+.. |..-|+.+++-| +..+++++.||. |++|++. +..+.++
T Consensus 146 v~~l~e~~~vTgsaDKtIklWk~~~---~l~tf~g--HtD~VRgL~vl~--~~~flScsNDg~-Ir~w~~~--ge~l~~~ 215 (745)
T KOG0301|consen 146 VASLPENTYVTGSADKTIKLWKGGT---LLKTFSG--HTDCVRGLAVLD--DSHFLSCSNDGS-IRLWDLD--GEVLLEM 215 (745)
T ss_pred eeecCCCcEEeccCcceeeeccCCc---hhhhhcc--chhheeeeEEec--CCCeEeecCCce-EEEEecc--Cceeeee
Confidence 9888777999999999999998633 2233444 888999999985 456889999999 9999994 6778999
Q ss_pred ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc-ceeEEEEecCCCCceEEEec
Q 040307 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM-AEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~~l~~~~~ 330 (339)
.+|..-|++++..+++ ..++++++|++++||+... ......|. ..|+++.+-++|. ++++|.
T Consensus 216 ~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e---------------~~q~I~lPttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDE---------------CVQVITLPTTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred eccceEEEEEEecCCC-CeEEEecCCceEEEeecCc---------------eEEEEecCccceEEEEEeeCCC-EEEecc
Confidence 9999999999977666 4999999999999998873 33344444 4899999999985 999999
Q ss_pred CCeEEEEe
Q 040307 331 VNKLQLLK 338 (339)
Q Consensus 331 d~~v~~w~ 338 (339)
||.||||.
T Consensus 279 DG~VrVfT 286 (745)
T KOG0301|consen 279 DGRVRVFT 286 (745)
T ss_pred CceEEEEE
Confidence 99999996
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.2e-28 Score=190.43 Aligned_cols=235 Identities=15% Similarity=0.279 Sum_probs=197.5
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|.|++=+|..- ..+|+|+ | .|+|||+...+ +..+++.|. +.|.+|++. . ..+++++.|
T Consensus 63 ~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnlsqR~--~~~~f~AH~-----G~V~Gi~v~--~-~~~~tvgdD 128 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNLSQRE--CIRTFKAHE-----GLVRGICVT--Q-TSFFTVGDD 128 (433)
T ss_pred cccccccchhhcCcchh----hhhhccccCceEEEEehhhhh--hhheeeccc-----CceeeEEec--c-cceEEecCC
Confidence 58999999999999873 5678877 5 99999999887 889999998 999999996 2 788999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
.+|+.|.++. .++.++. ....+..+.-+ .++.++|+|. .|.|||.....+...+.-+ ...+.++.|+|....
T Consensus 129 KtvK~wk~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG---~Dti~svkfNpvETs 201 (433)
T KOG0268|consen 129 KTVKQWKIDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG---ADSISSVKFNPVETS 201 (433)
T ss_pred cceeeeeccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecC---CCceeEEecCCCcch
Confidence 9999999865 4667764 34567777777 6788998875 5899999877655554433 467999999998888
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
+|++++.|++ |.|||++. ..|+..+.. ...-+.|+|+|.+ ..++++++|.+++.||++... .|+
T Consensus 202 ILas~~sDrs-IvLyD~R~-~~Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~------------~p~ 265 (433)
T KOG0268|consen 202 ILASCASDRS-IVLYDLRQ-ASPLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS------------RPL 265 (433)
T ss_pred heeeeccCCc-eEEEeccc-CCccceeee-eccccceecCccc-cceeeccccccceehhhhhhc------------ccc
Confidence 9999999999 99999998 667776654 4566899999966 689999999999999999988 454
Q ss_pred -eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 -LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 -~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...+|...|.+++|||.|+.+++++.|.+||||.+
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence 56689999999999999999999999999999974
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=189.09 Aligned_cols=255 Identities=16% Similarity=0.265 Sum_probs=201.4
Q ss_pred cCCeeEEEeeec----CCcccEEEEeeeccccCCeEEEEecCCCCCccccee----------------eEeecCCCCceE
Q 040307 17 QWPISTVAWSVR----HDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN----------------RLIFDHPYTPTN 76 (339)
Q Consensus 17 ~~~v~~i~~sp~----~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~~v~~ 76 (339)
+....|++|... ...|+++|+|+ .+..|.|||++.-........ ....+|+..|..
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGt----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGT----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEec----cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH
Confidence 456678888653 23588999999 599999999886443222100 001268999999
Q ss_pred EEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307 77 IAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID 154 (339)
Q Consensus 77 l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 154 (339)
|+|+..-+ .+||+|+ | +|++||+++++ +..++..|. ..|.++.|+|..+..|++|+.|++|.+.|.+
T Consensus 249 Ls~n~~~~----nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~-----k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 249 LSWNRNFR----NVLASGSADKTVKLWDVDTGK--PKSSITHHG-----KKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred HHhccccc----eeEEecCCCceEEEEEcCCCC--cceehhhcC-----CceeEEEecCCCceEEEeccccceEEeeecc
Confidence 99999886 8999998 6 99999999998 888888887 8999999999999999999999999999998
Q ss_pred CCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 155 REILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 155 ~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
........-...+.|-.++|. ..+.++++..||+|+-+|+|....+...... |..+|.++++++....++++++.+
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeecccc
Confidence 543332222356789999999 4778888999999999999999766555555 889999999999899999999999
Q ss_pred CCeEEEEecCCCCCc-eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 233 SNKVVVLDIRFPTNP-VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 233 ~~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+. +++|++...... +......-+...|.++.|+-...++.|+..+.++|||+.+..
T Consensus 396 ~~-Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 396 KV-VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ce-EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 99 999998753221 111111123467888999987789999999999999998876
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=194.55 Aligned_cols=249 Identities=19% Similarity=0.267 Sum_probs=191.2
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc---------cceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF---------SADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
...|.+++|+|. +..|++.+ .....+|+|-+ +.++ ........+|...++|.+|+|..+
T Consensus 214 ~h~i~sl~ys~T---g~~iLvvs----g~aqakl~DRd--G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--- 281 (641)
T KOG0772|consen 214 THQINSLQYSVT---GDQILVVS----GSAQAKLLDRD--GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--- 281 (641)
T ss_pred ccccceeeecCC---CCeEEEEe----cCcceeEEccC--CceeeeeeccchhhhhhhccCCceeeeeccccccCcc---
Confidence 468999999999 77666666 47888895433 3222 111122458999999999999986
Q ss_pred CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeee
Q 040307 88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQL 162 (339)
Q Consensus 88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~ 162 (339)
..+++++ | +++||++++.+ .....++.....+..-+++.++|+| ++++||+|..||.|.+|+..... ....-
T Consensus 282 -~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 282 -EEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred -cceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEee
Confidence 6666666 5 99999998865 2444444433334447899999998 99999999999999999975432 22223
Q ss_pred eccCC--ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC------C
Q 040307 163 VAHDR--EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD------S 233 (339)
Q Consensus 163 ~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------~ 233 (339)
.+|.. .|+||.|+ ++++|++-+.|+++++||+|..+.+......-....+-+.++|+| +.++|++|+.- +
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAG 437 (641)
T ss_pred eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCc
Confidence 57876 89999999 999999999999999999999887766555434445678899999 88999998653 4
Q ss_pred CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
. +.+||..+ -..+.++......|..+.|+|.- +.|..|+.||.+++|=
T Consensus 438 ~-L~f~d~~t-~d~v~ki~i~~aSvv~~~WhpkL-NQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 438 T-LFFFDRMT-LDTVYKIDISTASVVRCLWHPKL-NQIFAGSGDGTAHVYY 485 (641)
T ss_pred e-EEEEeccc-eeeEEEecCCCceEEEEeecchh-hheeeecCCCceEEEE
Confidence 4 99999877 45567777778899999999998 5888888899999874
No 120
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1e-26 Score=201.91 Aligned_cols=236 Identities=17% Similarity=0.281 Sum_probs=199.4
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.+.|.++++... +.+|++|+ .|.++++|+.. ++.... .+ .+|...|.++...+ .++++|
T Consensus 247 GH~g~V~~l~~~~~---~~~lvsgS----~D~t~rvWd~~--sg~C~~--~l-~gh~stv~~~~~~~-------~~~~sg 307 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSG---GDKLVSGS----TDKTERVWDCS--TGECTH--SL-QGHTSSVRCLTIDP-------FLLVSG 307 (537)
T ss_pred CCCCCceeEEEecC---CCEEEEEe----cCCcEEeEecC--CCcEEE--Ee-cCCCceEEEEEccC-------ceEeec
Confidence 47899999999987 78999999 79999997744 445554 44 68999999998766 466776
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ | +|++|+++++. .+..+.+|. .+|+++..+ +.++++|+.|++|++||+.+++++..+.+|...|.++
T Consensus 308 s~D~tVkVW~v~n~~--~l~l~~~h~-----~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGA--CLNLLRGHT-----GPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL 377 (537)
T ss_pred cCCceEEEEeccCcc--eEEEecccc-----ccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE
Confidence 6 6 99999999887 888888888 999999985 6899999999999999999999999999999999999
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 173 SWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
.+...+.+++|+.|+.|++||+++.......+.. |..-+..+.+ .+++|++++.|+. |++||... ++.+..+.
T Consensus 378 ~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~--h~~~v~~l~~---~~~~Lvs~~aD~~-Ik~WD~~~-~~~~~~~~ 450 (537)
T KOG0274|consen 378 IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQG--HTSLVSSLLL---RDNFLVSSSADGT-IKLWDAEE-GECLRTLE 450 (537)
T ss_pred EecCcceEEeeeeccceEeecCCchhhhhhhhcC--Cccccccccc---ccceeEecccccc-EEEeeccc-Cceeeeec
Confidence 8873399999999999999999998323333333 5666666665 5689999999999 99999987 77788888
Q ss_pred c-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 253 K-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 253 ~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+ |...|..+++. . ..+++++.||.+++||++...
T Consensus 451 ~~~~~~v~~l~~~--~-~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 451 GRHVGGVSALALG--K-EEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred cCCcccEEEeecC--c-ceEEEEecCCeeEEEecccCc
Confidence 8 67889888887 2 378899999999999999987
No 121
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.96 E-value=2.6e-27 Score=183.13 Aligned_cols=297 Identities=13% Similarity=0.148 Sum_probs=221.0
Q ss_pred ccCCeeEEEeeecC--CcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 16 AQWPISTVAWSVRH--DRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 16 ~~~~v~~i~~sp~~--~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
+..+|+.++|++-. +..+.+|+++ .+.+.||+...+.............|......++|+-+....+| ++|.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-----~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p-~la~ 110 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-----GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP-FLAA 110 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-----CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe-eEEe
Confidence 45789999999632 2356788877 78999999887764333222223357888999999887643344 5555
Q ss_pred eCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccCCc
Q 040307 94 SGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHDRE 168 (339)
Q Consensus 94 ~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~ 168 (339)
+|- .|+|.|+...+ +...+.+|. ..|+.+.++|.+.+++++++.|..|++|++++..++..+ .+|.+.
T Consensus 111 ~G~~GvIrVid~~~~~--~~~~~~ghG-----~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQ--CSKNYRGHG-----GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred ecceeEEEEEecchhh--hccceeccC-----ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 553 99999999987 888888988 999999999988899999999999999999999988887 579999
Q ss_pred eeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEE-------------------------eCCCCCCCeEEEEEecCC
Q 040307 169 VYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY-------------------------ENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~p~~ 222 (339)
|.++.|+ ++.+|++++.|.+|++|++...+....+. ....|...|-++.|-
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--- 260 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--- 260 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---
Confidence 9999999 89999999999999999998543111100 112244555566663
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCc-------------eEEEecCCCCeeEE--EeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNP-------------VVVLSKHEGSVNGI--SWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~-------------~~~~~~~~~~v~~~--~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
|+++++-+-++. |..|......+. +.++......++-+ +|.|-+ ++||.|...|.|.+||++.
T Consensus 261 gd~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 261 GDFILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred hhheeecccCce-EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCC
Confidence 588888888887 999987322211 22233333445544 566777 6999999999999999999
Q ss_pred CCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 288 PGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.+. + ....+........|.+.+|+.|+..|++.+.|++|.-|+
T Consensus 339 ~ep-~-------~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 339 NEP-P-------KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CCC-c-------cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 870 0 000111223356799999999999999999999998886
No 122
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1e-26 Score=193.03 Aligned_cols=301 Identities=13% Similarity=0.128 Sum_probs=222.2
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
..+.--.|.+.|.+|...|. |..||+|+ .||+|+||.+. ++.+.. .....+.|.|++|+|....
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~---G~wlasGs----dDGtvriWEi~--TgRcvr----~~~~d~~I~~vaw~P~~~~--- 455 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPS---GEWLASGS----DDGTVRIWEIA--TGRCVR----TVQFDSEIRSVAWNPLSDL--- 455 (733)
T ss_pred eeeeEeccCCeEEEEEecCC---cceeeecC----CCCcEEEEEee--cceEEE----EEeecceeEEEEecCCCCc---
Confidence 33444568899999999999 99999999 89999996654 455554 2445678999999999853
Q ss_pred CeEEEeCC-cEEEEeecCCc-------ceeE--------------EEeec---------CCCccCCCCEEEEEEcCCCCC
Q 040307 89 DIVATSGD-SLRLWEIHDDR-------TELK--------------SLLNS---------NKTSEFSSAITSFDWAGFDTR 137 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~-------~~~~--------------~~~~~---------~~~~~~~~~i~~~~~~~~~~~ 137 (339)
.+||++.+ .+.|-+..-+. ..++ ...+. +....+...|..+.|+. .|.
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGD 534 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGD 534 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCc
Confidence 56666654 55444432210 0000 00000 00011237899999996 999
Q ss_pred EEEEEeCC---CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307 138 RVATCSVD---TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL 213 (339)
Q Consensus 138 ~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v 213 (339)
+|++...+ ..|.|+++...+....+....+.|.++.|+| ..+|++++ ...|++||+..+.....+..+ ...|
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg---~kwi 610 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG---SKWI 610 (733)
T ss_pred eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC---Ceee
Confidence 99997653 5789999987776666666677899999995 44555554 468999999987655544443 4578
Q ss_pred EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC
Q 040307 214 LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG 293 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 293 (339)
.+++.+| .|..|+.|+.|+. +..||+....+|.+++..|...+++|+|++.-+ ++++|+.||.+.|+.-.-...
T Consensus 611 S~msihp-~GDnli~gs~d~k-~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~D--- 684 (733)
T KOG0650|consen 611 SSMSIHP-NGDNLILGSYDKK-MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYND--- 684 (733)
T ss_pred eeeeecC-CCCeEEEecCCCe-eEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehh---
Confidence 9999998 8999999999999 999999988899999999999999999999995 999999999999997554331
Q ss_pred CCCCCCcccce-eeecccc----eeEEEEecCCCCceEEEecCCeEEEE
Q 040307 294 NGGPSGDVEPE-LCYQSMA----EINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~----~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
......+.|+ .+.+|.. .|.++.|||..+.|++++.||+|++|
T Consensus 685 -l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 685 -LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 0001112233 4446644 49999999999999999999999998
No 123
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5e-28 Score=187.11 Aligned_cols=240 Identities=15% Similarity=0.211 Sum_probs=204.3
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+.++|.|+.||.| ...||+|+ .||.|++|.+.. +.+.. .+...|...|+|+.|+.|+ ..+.+++
T Consensus 262 md~aVlci~FSRD---sEMlAsGs----qDGkIKvWri~t--G~ClR--rFdrAHtkGvt~l~FSrD~-----SqiLS~s 325 (508)
T KOG0275|consen 262 MDDAVLCISFSRD---SEMLASGS----QDGKIKVWRIET--GQCLR--RFDRAHTKGVTCLSFSRDN-----SQILSAS 325 (508)
T ss_pred cccceEEEeeccc---HHHhhccC----cCCcEEEEEEec--chHHH--HhhhhhccCeeEEEEccCc-----chhhccc
Confidence 4689999999999 99999999 899999977654 44444 4456899999999999999 4555555
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec--cCCceeE
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA--HDREVYD 171 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~v~~ 171 (339)
| +++|--+..++ ++..+++|. +-|+...|.+ +|+.+++++.||+|++|+..+.+++.+++. ...+|.+
T Consensus 326 fD~tvRiHGlKSGK--~LKEfrGHs-----Syvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vns 397 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGK--CLKEFRGHS-----SYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNS 397 (508)
T ss_pred ccceEEEeccccch--hHHHhcCcc-----ccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCccccee
Confidence 7 99999999998 889999998 8999999997 999999999999999999999999988863 3446777
Q ss_pred EEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 172 ISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 172 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
+-.- +...++.|...+++.+-++...- ...+..+....+...+++.+| .|..+++.+.|+. ++.|.+.+ ++...
T Consensus 398 v~~~PKnpeh~iVCNrsntv~imn~qGQv-VrsfsSGkREgGdFi~~~lSp-kGewiYcigED~v-lYCF~~~s-G~LE~ 473 (508)
T KOG0275|consen 398 VILLPKNPEHFIVCNRSNTVYIMNMQGQV-VRSFSSGKREGGDFINAILSP-KGEWIYCIGEDGV-LYCFSVLS-GKLER 473 (508)
T ss_pred EEEcCCCCceEEEEcCCCeEEEEeccceE-EeeeccCCccCCceEEEEecC-CCcEEEEEccCcE-EEEEEeec-Cceee
Confidence 7666 47789999999999999987643 334444444567788899998 9999999999998 99999987 67788
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
++..|...|..++-+|.. ++||+-++||.+++|.
T Consensus 474 tl~VhEkdvIGl~HHPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 TLPVHEKDVIGLTHHPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred eeecccccccccccCccc-chhhhhcccchhhhcC
Confidence 999999999999999998 6999999999999995
No 124
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=203.12 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=164.5
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC--------------------------------C-------------
Q 040307 122 FSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR--------------------------------E------------- 156 (339)
Q Consensus 122 ~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~--------------------------------~------------- 156 (339)
|.++|.++.|++ +|++||+|+.|+.|+||.+.. .
T Consensus 266 h~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 266 HKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred cCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 449999999997 999999999999999998754 0
Q ss_pred ---------------eeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307 157 ---------------ILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 157 ---------------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
+++..+.+|.+.|.++.|+.+++|++++.|.+|+||++....++..+. |...|+|++|+|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe----cCCeeEEEEeccc
Confidence 356667789999999999988999999999999999999887655543 5689999999999
Q ss_pred CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
+.+|+++|+.|+. ++||++.. .+ +.....-..-|++++|.|+| +..+.|+.+|.+++|++...+- .
T Consensus 421 DDryFiSGSLD~K-vRiWsI~d-~~-Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~----------~ 486 (712)
T KOG0283|consen 421 DDRYFISGSLDGK-VRLWSISD-KK-VVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKL----------V 486 (712)
T ss_pred CCCcEeecccccc-eEEeecCc-Ce-eEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeE----------E
Confidence 9999999999999 99999975 33 33333334789999999999 6999999999999999998770 0
Q ss_pred cceeee-------cccceeEEEEecCCCCc-eEEEecCCeEEEEeC
Q 040307 302 EPELCY-------QSMAEINVVRWSPLELD-WIAIAFVNKLQLLKV 339 (339)
Q Consensus 302 ~~~~~~-------~~~~~i~~~~~~p~~~~-l~~~~~d~~v~~w~v 339 (339)
....+. .|. .|+.+.|.|.... ++.++.|..|||++.
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 001111 133 7999999997765 888999999999974
No 125
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=2.1e-26 Score=185.34 Aligned_cols=291 Identities=16% Similarity=0.210 Sum_probs=216.6
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+..+|++++|+|..+ .+++|+|. ..|.|-+|++..+.........+ ..|..+|.++.|+|.... ++++++.
T Consensus 185 ~~~Rit~l~fHPt~~-~~lva~Gd----K~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s---~i~ssSy 255 (498)
T KOG4328|consen 185 TDRRITSLAFHPTEN-RKLVAVGD----KGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTS---QIYSSSY 255 (498)
T ss_pred cccceEEEEecccCc-ceEEEEcc----CCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChh---heeeecc
Confidence 568999999999822 36888888 89999999996333322221123 689999999999998753 5666666
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeeeccCCceeEEE
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQLVAHDREVYDIS 173 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~v~~~~ 173 (339)
| +|++-|++....+.+..+.... ..+..+.|+. +...++.+..-|...+||++++.. ...+.-|...|.+|+
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~-----~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDN-----IWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccc-----eeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 7 9999999998755555554333 5677888986 777778888888999999998764 556677888999999
Q ss_pred ec--CCcEEEEEeCCCcEEEEECCCCcceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC---CCCCc
Q 040307 174 WG--GFNVFASVSGDCSVRVFDLRDKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR---FPTNP 247 (339)
Q Consensus 174 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~---~~~~~ 247 (339)
++ ...+|++++.|++.+|||+|....... +.....|...|.++.|+|.++. |++.+.|.. |+|||.. ....+
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~-IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNE-IRVFDSSCISAKDEP 407 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCc-eEEeecccccccCCc
Confidence 99 478999999999999999998654332 3333457889999999996666 888899998 9999984 32444
Q ss_pred eEEEecCC----C--CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-ec-ccceeEE-EEe
Q 040307 248 VVVLSKHE----G--SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQ-SMAEINV-VRW 318 (339)
Q Consensus 248 ~~~~~~~~----~--~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~-~~~ 318 (339)
..++. |. . ......|.|+. .++++|-.-..|-|+|-..++ .+.. .. ....|.+ ..|
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q-------------~v~el~~P~~~tI~~vn~~ 472 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQ-------------MVCELHDPESSTIPSVNEF 472 (498)
T ss_pred cceee-ccCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCE-------------EeeeccCccccccccceee
Confidence 44443 32 2 23467899998 699999998899999988776 2222 11 1223444 689
Q ss_pred cCCCCceEEEe-cCCeEEEEe
Q 040307 319 SPLELDWIAIA-FVNKLQLLK 338 (339)
Q Consensus 319 ~p~~~~l~~~~-~d~~v~~w~ 338 (339)
+|.+..+++++ ..|.|.||-
T Consensus 473 HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 473 HPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccceeccCCccceEEEEe
Confidence 99987677665 678888883
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=195.29 Aligned_cols=268 Identities=17% Similarity=0.219 Sum_probs=207.5
Q ss_pred eeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE
Q 040307 12 HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV 91 (339)
Q Consensus 12 ~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l 91 (339)
.++.|..+-+.|+|.|+ |.+|.+++ .||.|++|+-.....+... + ..+...|.+++-.. ..|
T Consensus 8 lRyaht~G~t~i~~d~~---gefi~tcg----sdg~ir~~~~~sd~e~P~t---i-~~~g~~v~~ia~~s-------~~f 69 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPD---GEFICTCG----SDGDIRKWKTNSDEEEPET---I-DISGELVSSIACYS-------NHF 69 (933)
T ss_pred chhhccCceEEEEEcCC---CCEEEEec----CCCceEEeecCCcccCCch---h-hccCceeEEEeecc-------cce
Confidence 35678889999999999 99998888 7999999876655433332 1 12777777777543 456
Q ss_pred EEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCce
Q 040307 92 ATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREV 169 (339)
Q Consensus 92 a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v 169 (339)
++|+ + +|.+|.+..++. -..+...+ -++++++|+- +|+++|.|+.|-.|++.++.+......+.+|.++|
T Consensus 70 ~~~s~~~tv~~y~fps~~~--~~iL~Rft-----lp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEE--DTILARFT-----LPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred EEeeccceEEEeeCCCCCc--cceeeeee-----ccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 6666 4 999999998873 22233323 6899999995 99999999999999999999998899999999999
Q ss_pred eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-----CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-----VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
.++.|+ .+++||+.+.||.|++||+.++.....+.... .....+..++|+| ++..+++...++. |++|+...
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~-Vkvy~r~~ 219 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNT-VKVYSRKG 219 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCe-EEEEccCC
Confidence 999999 79999999999999999999886443332111 1134567899999 5555566677777 99999876
Q ss_pred CCCceEEEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 244 PTNPVVVLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 244 ~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
..+...+.. +...+..++|+|.| ++||+++.||.|.|||.++.. . ......|++++|.|+
T Consensus 220 -we~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~-------------~---~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 220 -WELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE-------------R---HEFKRAVCCEAWKPN 281 (933)
T ss_pred -ceeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch-------------h---ccccceeEEEecCCC
Confidence 444555543 34458999999999 799999999999999999855 2 233567999999999
Q ss_pred CCce
Q 040307 322 ELDW 325 (339)
Q Consensus 322 ~~~l 325 (339)
...+
T Consensus 282 ~n~i 285 (933)
T KOG1274|consen 282 ANAI 285 (933)
T ss_pred CCee
Confidence 8743
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=181.94 Aligned_cols=249 Identities=20% Similarity=0.329 Sum_probs=183.8
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC------------CCcccceeeEeecCCCCceEEEEcC
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE------------TSDFSADNRLIFDHPYTPTNIAFFP 81 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~~~~~~~v~~l~~~~ 81 (339)
..|.+.+..+.-++-.+ ..+.|+=+ ..|.|+||++... ..+.....++ .+|...=+.|.|||
T Consensus 148 i~h~g~~NRvr~~~~~~-~~~~asws----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGN-EVLCASWS----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccceeeecccCC-cceeeeec----ccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccc
Confidence 34556666666666610 33444444 6899999986532 1112221122 47888889999999
Q ss_pred CCCCCCCCeEEEeCC--cEEEEeecCCccee-EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-
Q 040307 82 SEETLNPDIVATSGD--SLRLWEIHDDRTEL-KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI- 157 (339)
Q Consensus 82 ~~~~~~~~~la~~~~--~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~- 157 (339)
-.. ..|++|.- .|++|...++.+.. ...+.+|+ ..|-.++|||.....|++|+.||+|+|||++.+.
T Consensus 222 ~~~----g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-----~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 222 IKT----GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-----KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ccc----cccccCccccceEeeeeccCceeecCccccccc-----cchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 653 45666653 99999999876432 23455677 8999999999888999999999999999999883
Q ss_pred --eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307 158 --LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN 234 (339)
Q Consensus 158 --~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 234 (339)
++.. ++|.+.|+-|.|+ .-.+|++|+.||+++|||+|+-+.-..+.....|+.+|+++.|+|.+...|++++.|..
T Consensus 293 ~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 293 KAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred cceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 3333 7899999999999 55599999999999999999876433332333489999999999999999999999998
Q ss_pred eEEEEecCCCCC---------------ceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCc
Q 040307 235 KVVVLDIRFPTN---------------PVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSR 279 (339)
Q Consensus 235 ~i~i~d~~~~~~---------------~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~ 279 (339)
|.+||+..... |.+.+-.| ...+..+.|+++-+.+|++.+.||-
T Consensus 372 -itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 372 -ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred -EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 99999964221 11222234 4578899999998889999998874
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.1e-25 Score=171.96 Aligned_cols=290 Identities=16% Similarity=0.246 Sum_probs=216.8
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc----ccce------eeEeecCCCCceEEEEcCCCC
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD----FSAD------NRLIFDHPYTPTNIAFFPSEE 84 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~----~~~~------~~~~~~~~~~v~~l~~~~~~~ 84 (339)
.|.+.|.++...|. .++++++|+ .||.|.+||++..+.. +... ...+.+|.-.|..+.|-|-..
T Consensus 41 ~HgGsvNsL~id~t--egrymlSGg----adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLT--EGRYMLSGG----ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred cCCCccceeeeccc--cceEEeecC----CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 46678888888876 699999999 7999999998754411 1110 011346788899999999874
Q ss_pred CCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCeeee
Q 040307 85 TLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREILET 160 (339)
Q Consensus 85 ~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~ 160 (339)
-++.+++ | ++++||.++-+ ....|+-. +.|..-+|+|-. ..+||+|..+-.|++.|+.+|....
T Consensus 115 ----GmFtssSFDhtlKVWDtnTlQ--~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 115 ----GMFTSSSFDHTLKVWDTNTLQ--EAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred ----ceeecccccceEEEeecccce--eeEEeecC------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 6888877 7 99999999876 34444322 578888888742 3578889999999999999999999
Q ss_pred eeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCc------------ceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307 161 QLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKE------------RSTIIYENPVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 161 ~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l 226 (339)
.+.+|.+.|.++.|+| .-.|++|+.||.|++||+|... .+......+.|.+.+..++|.. ++.++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l 261 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYL 261 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhh
Confidence 9999999999999994 5578999999999999998652 2222233456778999999996 99999
Q ss_pred EEEeeCCCeEEEEecCCCCCceEEEe--cCCC---CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 227 ATVGMDSNKVVVLDIRFPTNPVVVLS--KHEG---SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~~~~~~~~--~~~~---~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
++++.|.. +++|+..++...+..+. .|+. .-..+. +-+.+ .++---.++.+.++++-.+.
T Consensus 262 ~~~gtd~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~lall~~~sgs------------ 326 (397)
T KOG4283|consen 262 ASCGTDDR-IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSLALLNLLEGS------------ 326 (397)
T ss_pred hhccCccc-eEEeecccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeEEEEEccCce------------
Confidence 99999999 99999987554333221 1111 111133 33332 45555566889998888877
Q ss_pred cceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 302 EPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 302 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.......|...|.+..+-|+-+...++..|+.+..|-
T Consensus 327 ~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 327 FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred EEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 2335567788899999999988899999999988874
No 129
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=7.5e-27 Score=195.36 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=103.4
Q ss_pred CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
..|+.+.|+|.+...||+++.|+. |++|.+...+ .|...+..|...|+++.|+|-...+|++++.|.+|++||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 467888999999999999999998 9999987643 466788899999999999998767999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 285 VVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
+.+.. ....+.+|.+.|.+++|||+|+.++++|.||+|++|+
T Consensus 707 l~~~~------------~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAK------------LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhh------------hhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 99988 3457789999999999999999999999999999985
No 130
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.9e-26 Score=201.67 Aligned_cols=254 Identities=17% Similarity=0.230 Sum_probs=198.1
Q ss_pred ceeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC--CC------------cccceeeEeecCCCC
Q 040307 9 PGVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE--TS------------DFSADNRLIFDHPYT 73 (339)
Q Consensus 9 ~~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~--~~------------~~~~~~~~~~~~~~~ 73 (339)
+.+.+. .|...|.|+.|+|| |++||+|+ .|..|.||..... +. .+.....+ .+|...
T Consensus 60 k~l~~m~~h~~sv~CVR~S~d---G~~lAsGS----DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~D 131 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPD---GSYLASGS----DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSD 131 (942)
T ss_pred hhheeeccccCceeEEEECCC---CCeEeecc----CcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCc
Confidence 334444 47889999999999 99999999 8999999988731 11 11121233 589999
Q ss_pred ceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 74 PTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
|..++|+|++ .+||+++ | +|.||+..+.+ ....+++|. +.|..+.|.| -|++||+-+.|++|+||
T Consensus 132 V~Dv~Wsp~~-----~~lvS~s~DnsViiwn~~tF~--~~~vl~~H~-----s~VKGvs~DP-~Gky~ASqsdDrtikvw 198 (942)
T KOG0973|consen 132 VLDVNWSPDD-----SLLVSVSLDNSVIIWNAKTFE--LLKVLRGHQ-----SLVKGVSWDP-IGKYFASQSDDRTLKVW 198 (942)
T ss_pred cceeccCCCc-----cEEEEecccceEEEEccccce--eeeeeeccc-----ccccceEECC-ccCeeeeecCCceEEEE
Confidence 9999999999 8999999 6 99999999885 999999998 9999999999 99999999999999999
Q ss_pred ECCCCeeeeeeeccC------CceeEEEec-CCcEEEEEeC----CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307 152 DIDREILETQLVAHD------REVYDISWG-GFNVFASVSG----DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK 220 (339)
Q Consensus 152 d~~~~~~~~~~~~~~------~~v~~~~~~-~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p 220 (339)
++.+-...+.+..+- .....+.|+ +|.+|++... -..+.|.+-.+.+. ...+.+ |..++.+++|+|
T Consensus 199 rt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~-~~~LvG--H~~p~evvrFnP 275 (942)
T KOG0973|consen 199 RTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV-DKDLVG--HSAPVEVVRFNP 275 (942)
T ss_pred EcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee-eeeeec--CCCceEEEEeCh
Confidence 977655555554332 346789999 7999987743 34577776544442 223333 778999999998
Q ss_pred C-----C-------CC----eEEEEeeCCCeEEEEecCCCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307 221 A-----D-------PR----FMATVGMDSNKVVVLDIRFPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 221 ~-----~-------~~----~l~~~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw 283 (339)
. . .+ .+|+|+.|+. |.||.... .+|+.. ..-....|..++|+||| ..|+.+|.||+|.+.
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~~-~RPl~vi~~lf~~SI~DmsWspdG-~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTAL-PRPLFVIHNLFNKSIVDMSWSPDG-FSLFACSLDGTVALI 352 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCcc-EEEEecCC-CCchhhhhhhhcCceeeeeEcCCC-CeEEEEecCCeEEEE
Confidence 1 1 11 6889999999 99999866 444433 33346789999999999 799999999999999
Q ss_pred EecCCC
Q 040307 284 EVVGPG 289 (339)
Q Consensus 284 d~~~~~ 289 (339)
.++..+
T Consensus 353 ~Fee~E 358 (942)
T KOG0973|consen 353 HFEEKE 358 (942)
T ss_pred EcchHH
Confidence 998754
No 131
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-27 Score=196.64 Aligned_cols=240 Identities=15% Similarity=0.193 Sum_probs=198.2
Q ss_pred CCCCce---EEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce----eEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307 70 HPYTPT---NIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE----LKSLLNSNKTSEFSSAITSFDWAGFDTRRVA 140 (339)
Q Consensus 70 ~~~~v~---~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 140 (339)
|...|. .+..+..+. ++|.+|| | .|++|++...... ....++.|. .-|+.+...- +++.|+
T Consensus 20 n~~~v~~~~~Lq~da~~~----ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs-----DWVNDiiL~~-~~~tlI 89 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNG----RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS-----DWVNDIILCG-NGKTLI 89 (735)
T ss_pred ccccccchhhccccCCCC----ceEEecCCCceEEEeccccccCCcccchhhhhhhhH-----hHHhhHHhhc-CCCceE
Confidence 344454 555555543 7788888 5 9999998765421 356677777 8899998885 889999
Q ss_pred EEeCCCeEEEEECCCC--eeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcc--------eeeEEeCCC
Q 040307 141 TCSVDTTCVIWDIDRE--ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKER--------STIIYENPV 208 (339)
Q Consensus 141 ~~~~d~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~ 208 (339)
+++.|-+|++|+...+ -++.++..|.+.|.|+++- +..++|+||.|+.|.+||+..+.. ........+
T Consensus 90 S~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 90 SASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred EecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 9999999999999877 4778889999999999994 788999999999999999997632 111111124
Q ss_pred CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
+...+++++.++ .+..+++|+.++. +++||.+. .+.+..+++|...|..+..++|| ..+++++.||+|++||+...
T Consensus 170 ~k~siYSLA~N~-t~t~ivsGgtek~-lr~wDprt-~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 170 PKDSIYSLAMNQ-TGTIIVSGGTEKD-LRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred CccceeeeecCC-cceEEEecCcccc-eEEecccc-ccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeecccc
Confidence 678899999997 8899999999999 99999998 55678889999999999999999 69999999999999999988
Q ss_pred CCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 289 GYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 289 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
. ++ ....|...|+++.-+|+-..+.+|+.|+.|..
T Consensus 246 r-------------Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 246 R-------------CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred c-------------eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 7 44 55678888999999999888999999998865
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=7.7e-25 Score=178.54 Aligned_cols=285 Identities=14% Similarity=0.150 Sum_probs=216.5
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
....|.|++||+... |.+|+.-. ...+..+.+|+|+.+...-.. ...+..|....|+|.+. .++++++
T Consensus 153 f~~GV~~vaFsk~~~-G~~l~~vD--~s~~h~lSVWdWqk~~~~~~v-----k~sne~v~~a~FHPtd~----nliit~G 220 (626)
T KOG2106|consen 153 FDRGVTCVAFSKING-GSLLCAVD--DSNPHMLSVWDWQKKAKLGPV-----KTSNEVVFLATFHPTDP----NLIITCG 220 (626)
T ss_pred ccccceeeeecccCC-CceEEEec--CCCccccchhhchhhhccCcc-----eeccceEEEEEeccCCC----cEEEEeC
Confidence 356899999999744 55555543 224678899999976654443 34567889999999985 8999999
Q ss_pred C-cEEEEeecCCcce-eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 96 D-SLRLWEIHDDRTE-LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
. .+.+|+.+.+... ....++.+. . .-|.+++|.+ ++ -+++|..+|.|.||+..+.+..+....|.+.|.+++
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~e---k-k~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~ 294 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKRE---K-KFVLCVTFLE-NG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLC 294 (626)
T ss_pred CceEEEEEccCCceEEEeecccccc---c-eEEEEEEEcC-CC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEE
Confidence 7 9999999888622 223344433 2 6799999996 54 578999999999999988887777679999999999
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcce-----------eeEE--------------------------eCCCCCCCeEEE
Q 040307 174 WGGFNVFASVSGDCSVRVFDLRDKERS-----------TIIY--------------------------ENPVQDCPLLRL 216 (339)
Q Consensus 174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~--------------------------~~~~~~~~v~~~ 216 (339)
......|++|+.|+.|..||-.-.+.. ..+. ....|......+
T Consensus 295 ~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl 374 (626)
T KOG2106|consen 295 MLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL 374 (626)
T ss_pred EecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE
Confidence 993334556999999999993221100 0000 001255677788
Q ss_pred EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307 217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG 296 (339)
Q Consensus 217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 296 (339)
+.+| +...+++++.|+. +++|+ ..+++.+... ..++.++.|+|.| .+|.|+..|...+.|.++..
T Consensus 375 a~hp-s~~q~~T~gqdk~-v~lW~---~~k~~wt~~~-~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~------- 439 (626)
T KOG2106|consen 375 ATHP-SKNQLLTCGQDKH-VRLWN---DHKLEWTKII-EDPAECADFHPSG--VVAVGTATGRWFVLDTETQD------- 439 (626)
T ss_pred EcCC-ChhheeeccCcce-EEEcc---CCceeEEEEe-cCceeEeeccCcc--eEEEeeccceEEEEecccce-------
Confidence 8898 7888999999998 99998 2445544443 6788999999997 89999999999999999866
Q ss_pred CCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 297 PSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+.+....++++.++|+|+|.+++.++.|+.|.+|+|
T Consensus 440 ------lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 440 ------LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV 476 (626)
T ss_pred ------eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence 4555545889999999999998888999999999975
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=193.57 Aligned_cols=305 Identities=15% Similarity=0.176 Sum_probs=232.2
Q ss_pred CCCceeeeeec-cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCC-CCceEEEEcCCC
Q 040307 6 EKKPGVHTYMA-QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP-YTPTNIAFFPSE 83 (339)
Q Consensus 6 ~~~~~~~~~~~-~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~ 83 (339)
.+++.+++|.. ...|+++.=+|. -+.+|+|. .+|+|.|+++..+ +... .+.|. ++|+.++|..||
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPa---LDVVaiG~----~~G~ViifNlK~d--kil~----sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPA---LDVVAIGL----ENGTVIIFNLKFD--KILM----SFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred ccCcEEEEecccccceeEeccCCc---ceEEEEec----cCceEEEEEcccC--cEEE----EEEccccceeEEEeccCC
Confidence 45788888874 689999999999 88999999 8999999666654 3333 35665 999999999999
Q ss_pred CCCCCCeEEEeCC--cEEEEeecCCcceeEEEe-ecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----
Q 040307 84 ETLNPDIVATSGD--SLRLWEIHDDRTELKSLL-NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE---- 156 (339)
Q Consensus 84 ~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---- 156 (339)
. .++|+|+. .+.+||++..+ ....+ ..|. +.|+...|.| ....+++++.|..+++|=.+++
T Consensus 257 ~----p~las~~~~G~m~~wDLe~kk--l~~v~~nah~-----~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 257 N----PLLASGRSNGDMAFWDLEKKK--LINVTRNAHY-----GSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred C----eeEEeccCCceEEEEEcCCCe--eeeeeecccc-----CCcccceecC-CCceEeeccCCCceeEEEeeCCCCcc
Confidence 5 67777763 89999999886 44433 3565 7899999997 8899999999999998855543
Q ss_pred eeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceee--------------------------------
Q 040307 157 ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTI-------------------------------- 202 (339)
Q Consensus 157 ~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------------------------- 202 (339)
+.++.-.+|..+..|+.|. .+..+.+++.|++++.+++........
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 3455557899999999998 688999999999888887642210000
Q ss_pred ---------------------------------EEeC---CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 203 ---------------------------------IYEN---PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 203 ---------------------------------~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
.... ......+++++.++ .|++.+.|...|. |-+|++++ +-
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~-Id~fNmQS-Gi 481 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGT-IDRFNMQS-GI 481 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCe-EEEEEccc-Ce
Confidence 0000 00225678888886 8999999999998 99999987 54
Q ss_pred ceEEE---ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC----CCC------------CCCCC--Ccc----
Q 040307 247 PVVVL---SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY----RSG------------NGGPS--GDV---- 301 (339)
Q Consensus 247 ~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~----~~~------------~~~~~--~~~---- 301 (339)
...++ ..|.++|++++..-.+ +.+++++.+|.+++||+....- +.. ..... ...
T Consensus 482 ~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 482 HRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred eecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 45556 5899999999999988 6999999999999999987651 000 00000 000
Q ss_pred -c-----c-eeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 302 -E-----P-ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 302 -~-----~-~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
. . ....+|...|++++|||||+++++++.|++||+|+|
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 0 0 122368999999999999999999999999999996
No 134
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.2e-26 Score=182.76 Aligned_cols=244 Identities=18% Similarity=0.273 Sum_probs=198.8
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce--eEEE---eecC-----CC-ccCCCCEEEEEEcCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE--LKSL---LNSN-----KT-SEFSSAITSFDWAGF 134 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~--~~~~---~~~~-----~~-~~~~~~i~~~~~~~~ 134 (339)
..|.-+|.+++++|++ .+..+++ + +|.=|++.++... .... ++.| .. ..|...+.+++.+|
T Consensus 139 ~~H~~s~~~vals~d~-----~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~- 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDD-----KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS- 212 (479)
T ss_pred ccccCcceEEEeeccc-----cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-
Confidence 5899999999999999 7777777 4 9999998877511 0000 1101 01 24558899999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL 213 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v 213 (339)
++++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|- ..+.+++++.|+.|++|++........++. |+..|
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG---Hqd~v 289 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG---HQDGV 289 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC---Cccce
Confidence 99999999999999999999999999999999999999999 677899999999999999998775555444 67889
Q ss_pred EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC
Q 040307 214 LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG 293 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 293 (339)
..+.-.. .++.+-+|+.|.+ +++|++.. .....+.+|.+.+-+++|-.+. .+++|+.+|.|.+|++...+
T Consensus 290 ~~IdaL~-reR~vtVGgrDrT-~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKk---- 359 (479)
T KOG0299|consen 290 LGIDALS-RERCVTVGGRDRT-VRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKK---- 359 (479)
T ss_pred eeechhc-ccceEEeccccce-eEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccC----
Confidence 9988774 7778888889999 99999954 4455678888999999998874 79999999999999999877
Q ss_pred CCCCCCcccceeee-------------cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 294 NGGPSGDVEPELCY-------------QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 294 ~~~~~~~~~~~~~~-------------~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|+... .+...|++++..|....+++++.+|.||+|.+
T Consensus 360 ---------plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 360 ---------PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred ---------ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 33211 12248999999999887778889999999975
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-24 Score=183.35 Aligned_cols=282 Identities=16% Similarity=0.160 Sum_probs=223.2
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
.+.+|.++||+.+ .+.||++- .+|.|.||++.. .......+..+....|.+++|++.+ +++.++.
T Consensus 24 ~Ps~I~slA~s~k---S~~lAvsR----t~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~~-----RLFS~g~ 88 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK---SNQLAVSR----TDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEGG-----RLFSSGL 88 (691)
T ss_pred eccceEEEEEecc---CCceeeec----cCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccCC-----eEEeecC
Confidence 4789999999999 88899998 799999977665 2333334544566789999999888 7888777
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee--eeeeccCCceeEE
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE--TQLVAHDREVYDI 172 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~v~~~ 172 (339)
+ .|.-||+.+.+ +...+.... ++|.+++.+| .+..++.|++||.++.++...++.. ..+...++.|.++
T Consensus 89 sg~i~EwDl~~lk--~~~~~d~~g-----g~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 89 SGSITEWDLHTLK--QKYNIDSNG-----GAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred CceEEEEecccCc--eeEEecCCC-----cceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 6 99999999987 666666655 8999999998 8899999999998888888776633 3344456889999
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEE-----eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY-----ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
+|+ ++..++.|+.||.|++||...+....... .......-|+++.|- ....|++|...|. |.+||... +.
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~-V~FWd~~~-gT 236 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGT-VTFWDSIF-GT 236 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCce-EEEEcccC-cc
Confidence 999 67779999999999999999988555211 111123446777776 5578899999998 99999987 77
Q ss_pred ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc-eeeecccceeEEEEecCCCCce
Q 040307 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP-ELCYQSMAEINVVRWSPLELDW 325 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~l 325 (339)
.+..+..|.+.|.+++..+++ ..+++++.|+.|.-|....... .... .....|...|.+++..++ .+
T Consensus 237 LiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~---------~wv~~~~r~~h~hdvrs~av~~~--~l 304 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKS---------EWVINSRRDLHAHDVRSMAVIEN--AL 304 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCcc---------ceeeeccccCCcccceeeeeecc--eE
Confidence 888999999999999999998 5999999999999998888761 0111 123357778999998887 57
Q ss_pred EEEecCCeEEE
Q 040307 326 IAIAFVNKLQL 336 (339)
Q Consensus 326 ~~~~~d~~v~~ 336 (339)
++++.|.+|.+
T Consensus 305 ~sgG~d~~l~i 315 (691)
T KOG2048|consen 305 ISGGRDFTLAI 315 (691)
T ss_pred EecceeeEEEE
Confidence 88889988765
No 136
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=171.30 Aligned_cols=261 Identities=19% Similarity=0.236 Sum_probs=198.6
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccC---CeEEEEecCCCCCc-----ccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYS---NKIELVNFNPETSD-----FSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~---~~i~i~~~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
+.+.|..++-+|. +..+|++..+..... ..+.||++..+.+. +.....+...+-+.|.|+.|.|++
T Consensus 62 ~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns---- 135 (370)
T KOG1007|consen 62 HAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS---- 135 (370)
T ss_pred CCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC----
Confidence 4578999999997 356777766422222 45789888765443 333223433556789999999998
Q ss_pred CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCeeeeee-ec
Q 040307 88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAG-FDTRRVATCSVDTTCVIWDIDREILETQL-VA 164 (339)
Q Consensus 88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~ 164 (339)
+-+|+-.+ .|.+|+++.... ....+......++....++-+|+| ++++.+++. .|+++..||+++.+....+ .+
T Consensus 136 -~klasm~dn~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 136 -DKLASMDDNNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred -CeeEEeccCceEEEEcccCcc-hheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 77888777 999999988752 133333322233346788999999 577777775 5799999999988766666 57
Q ss_pred cCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307 165 HDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 165 ~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~ 242 (339)
|...|.++.|+| ..+|++|+.||.|++||+|..+.+...... |...+.++.|+|.-.+++++|+.|.. |.+|...
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~--HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~ 289 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG--HSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCAS 289 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC--CceEEEEEEecCccceEEEecCCCce-eEEEecc
Confidence 888999999994 668999999999999999998876655544 88899999999988899999999998 9999664
Q ss_pred CCC----------------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 243 FPT----------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 243 ~~~----------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
.-. ..+.++..|...|++++||...+-.+|+-+.||++.|=.+...
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 311 1234677899999999999998888999999999988666543
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=5.7e-24 Score=177.28 Aligned_cols=262 Identities=11% Similarity=0.105 Sum_probs=182.7
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeecCCcce
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIHDDRTE 109 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~~~~~~ 109 (339)
..+++++ .|+.|++|+... .+... . ..+...+.+++|+|++ ..+ ++++ + .|++||..+++
T Consensus 2 ~~~~s~~----~d~~v~~~d~~t--~~~~~--~--~~~~~~~~~l~~~~dg-----~~l~~~~~~~~~v~~~d~~~~~-- 64 (300)
T TIGR03866 2 KAYVSNE----KDNTISVIDTAT--LEVTR--T--FPVGQRPRGITLSKDG-----KLLYVCASDSDTIQVIDLATGE-- 64 (300)
T ss_pred cEEEEec----CCCEEEEEECCC--CceEE--E--EECCCCCCceEECCCC-----CEEEEEECCCCeEEEEECCCCc--
Confidence 4677777 699999977653 33332 2 2333457889999999 554 5655 3 99999998876
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEE-EeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT-CSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC 187 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 187 (339)
....+..+. .+..++|+| +++.+++ ++.++.|++||+++.+.+..+. +...+.+++|+ ++.++++++.++
T Consensus 65 ~~~~~~~~~------~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 65 VIGTLPSGP------DPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred EEEeccCCC------CccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCC
Confidence 444454432 356789998 7776654 4568999999999887777665 33456889999 788888888765
Q ss_pred -cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe-eCCCeEEEEecCCCCCceEEEecCC-----C--Ce
Q 040307 188 -SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG-MDSNKVVVLDIRFPTNPVVVLSKHE-----G--SV 258 (339)
Q Consensus 188 -~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~~i~i~d~~~~~~~~~~~~~~~-----~--~v 258 (339)
.+.+||.++.+....... ...+..++|+| +++.|++++ .++. |++||++. .+.+..+..+. . ..
T Consensus 137 ~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~-v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~ 209 (300)
T TIGR03866 137 NMAHFIDTKTYEIVDNVLV----DQRPRFAEFTA-DGKELWVSSEIGGT-VSVIDVAT-RKVIKKITFEIPGVHPEAVQP 209 (300)
T ss_pred CeEEEEeCCCCeEEEEEEc----CCCccEEEECC-CCCEEEEEcCCCCE-EEEEEcCc-ceeeeeeeecccccccccCCc
Confidence 467789887664333322 23457799998 777775544 5777 99999987 44444443221 1 23
Q ss_pred eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEE-ecCCeEEEE
Q 040307 259 NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAI-AFVNKLQLL 337 (339)
Q Consensus 259 ~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~d~~v~~w 337 (339)
..++|+|++...+++.+.++.+.+||+...+ ......+...+.+++|+|+++.|+++ +.++.|++|
T Consensus 210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYE-------------VLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred cceEECCCCCEEEEEcCCCCeEEEEECCCCc-------------EEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 4689999995334445567789999998766 33333445579999999999988775 468999999
Q ss_pred eC
Q 040307 338 KV 339 (339)
Q Consensus 338 ~v 339 (339)
++
T Consensus 277 d~ 278 (300)
T TIGR03866 277 DV 278 (300)
T ss_pred EC
Confidence 85
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.6e-25 Score=187.58 Aligned_cols=296 Identities=16% Similarity=0.132 Sum_probs=227.5
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE-ee-cCCCCceEEEEcCCCCCCCCCeEE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL-IF-DHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~-~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
.|++.|+++.|+|. +..|++++ .|.++.+|.-+..++.......+ +. +.....+...|+|++ .+++
T Consensus 265 GHeDWV~sv~W~p~---~~~LLSAS----aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-----~~ii 332 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPE---GLDLLSAS----ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-----NVII 332 (764)
T ss_pred CcccceEEEEEccc---hhhheecc----cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-----CEEE
Confidence 57899999999999 88888888 69999998877776666552222 11 234568899999999 6777
Q ss_pred EeC--CcEEEEeecCC-cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeeecc
Q 040307 93 TSG--DSLRLWEIHDD-RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI----LETQLVAH 165 (339)
Q Consensus 93 ~~~--~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~ 165 (339)
+-+ +..++|...+. .+.+...+.+|. ..|++++|+| .|.+|++.+.|.+-+++-.-..+ .+..-+-|
T Consensus 333 ~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~-----~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDKTFWTQEPVISGHV-----DGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred EecccCcEEEEeccCccceeecccccccc-----ccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccc
Confidence 666 39999994332 244555667777 9999999998 99999999999999998764211 22333568
Q ss_pred CCceeEEEecC-CcEEEEEeCCCcEEEEECCCC--------------------------------ccee-----------
Q 040307 166 DREVYDISWGG-FNVFASVSGDCSVRVFDLRDK--------------------------------ERST----------- 201 (339)
Q Consensus 166 ~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~--------------------------------~~~~----------- 201 (339)
...++|+++-+ ...|++|.....+|+|+.... +...
T Consensus 407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 88999999995 778899999999999986311 0000
Q ss_pred ------------eEEe------------------CCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCCCCc
Q 040307 202 ------------IIYE------------------NPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFPTNP 247 (339)
Q Consensus 202 ------------~~~~------------------~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~~~~ 247 (339)
.+.. .-+|...|.+++.+| +++++|+++.... .|++|+..+ ...
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~-W~~ 564 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN-WLQ 564 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc-hhh
Confidence 0000 013778999999998 9999999877654 499999887 555
Q ss_pred eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307 248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA 327 (339)
Q Consensus 248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~ 327 (339)
...+.+|.-.|+.++||||+ ++|++.+.|.++.+|...... ..+ ..-.....|..-|.+..|+|++.++++
T Consensus 565 ~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~-~~e-------~~fa~~k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDI-KDE-------FRFACLKAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred hheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeeccc-chh-------hhhccccccceEEEEcccCcccceeEE
Confidence 67899999999999999999 799999999999999986654 110 001125578889999999999999999
Q ss_pred EecCCeEEEEeC
Q 040307 328 IAFVNKLQLLKV 339 (339)
Q Consensus 328 ~~~d~~v~~w~v 339 (339)
++.|++|.+|.+
T Consensus 636 aSRDK~VkVW~~ 647 (764)
T KOG1063|consen 636 ASRDKKVKVWEE 647 (764)
T ss_pred ecCCceEEEEec
Confidence 999999999974
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-25 Score=183.03 Aligned_cols=269 Identities=14% Similarity=0.209 Sum_probs=209.1
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
+..+..+.++.|+.. .. |++++ ...|..+++|.-+...+++.... ....+.-.|++..... .++++
T Consensus 31 ~t~~pg~~s~~w~~~---n~-lvvas--~~gdk~~~~~~K~g~~~~Vp~~~---k~~gd~~~Cv~~~s~S-----~y~~s 96 (673)
T KOG4378|consen 31 QTAEPGDFSFNWQRR---NF-LVVAS--MAGDKVMRIKEKDGKTPEVPRVR---KLTGDNAFCVACASQS-----LYEIS 96 (673)
T ss_pred CCCCCcceeeecccc---ce-EEEee--cCCceeEEEecccCCCCccceee---ccccchHHHHhhhhcc-----eeeec
Confidence 333456999999988 54 44444 12688899976655544444322 2222244555555555 67777
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCcee
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-DREVY 170 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~ 170 (339)
|| + .|+|||+.... +.+.+++|+ ..|+++.++- ...+||+++..|.|.|..+.++.....+... ...|.
T Consensus 97 gG~~~~Vkiwdl~~kl--~hr~lkdh~-----stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKL--IHRFLKDHQ-----STVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred cCcCceeeehhhHHHH--HhhhccCCc-----ceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 77 3 99999999654 677888998 9999999995 8899999999999999999988877777533 34566
Q ss_pred EEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 171 DISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 171 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
-+.|+ ...+|.+++.+|.|.+||+..........+. |..+...++|+|.+..+|++.+.|.. |.+||.+. ....
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~--HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s-~~s~ 244 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA--HSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRS-QAST 244 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhh--ccCCcCcceecCCccceEEEecccce-EEEeeccc-cccc
Confidence 89999 4668889999999999999988755554444 88899999999988899999999999 99999986 4444
Q ss_pred EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCC
Q 040307 249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~ 322 (339)
..+. ...+...++|+++| .+|+.|...|.|..||++..+ .|+ ....|...|++++|-|.-
T Consensus 245 ~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k------------~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 245 DRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK------------APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceee-ecCCcceeeecCCc-eEEEeecCCceEEEEecccCC------------CCceEeeecccceeEEEeeecc
Confidence 4444 36789999999999 799999999999999999987 455 555788999999999874
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.3e-25 Score=189.46 Aligned_cols=235 Identities=14% Similarity=0.145 Sum_probs=198.4
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEE-EEEcCCCCCEEEEEeC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITS-FDWAGFDTRRVATCSV 144 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~ 144 (339)
.+|...|..++..+.. .+++++ | ++++|+-..+++.....+.+|. +-|.. +++-+.++..+++|+.
T Consensus 11 ~gH~~DVr~v~~~~~~------~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~-----g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV------CIISGSRDGTVKVWAKKGKQYLETHAFEGPK-----GFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred ccCccchheeEecCCe------EEeecCCCCceeeeeccCcccccceecccCc-----ceeeccceeccccCcceEeecc
Confidence 6899999999987765 566666 5 9999999888766666677766 55655 7777546667999999
Q ss_pred CCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 145 DTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
|.+|.+|.+.+..++..+.+|...|.++.......+++|+.|.++++|....... ..+.|+..|+.++.-| ++
T Consensus 80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~-----~l~gH~asVWAv~~l~-e~- 152 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY-----SLQGHTASVWAVASLP-EN- 152 (745)
T ss_pred cceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc-----ccCCcchheeeeeecC-CC-
Confidence 9999999999999999999999999999877434499999999999998776542 2445899999999987 44
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
.+++|+.|.. |++|.- ++.+.++.+|...|+++++-|++ -+++++.||.|++|++.... ..
T Consensus 153 ~~vTgsaDKt-IklWk~---~~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge~-------------l~ 213 (745)
T KOG0301|consen 153 TYVTGSADKT-IKLWKG---GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGEV-------------LL 213 (745)
T ss_pred cEEeccCcce-eeeccC---CchhhhhccchhheeeeEEecCC--CeEeecCCceEEEEeccCce-------------ee
Confidence 8899999999 999964 56789999999999999999996 58999999999999995544 55
Q ss_pred eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...+|...|++++..+++..+++++.|+++|+|+.
T Consensus 214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred eeeccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 77799999999997777778899999999999973
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.7e-27 Score=201.62 Aligned_cols=229 Identities=21% Similarity=0.302 Sum_probs=197.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..|...|.++..-... +.+++|+. .+-+|.+.... .+..+.+|. .+|.++.|++ ...+|++|+.+
T Consensus 25 ~~hsaav~~lk~~~s~-----r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~he-----spIeSl~f~~-~E~Llaagsas 91 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSS-----RSLVTGGEDEKVNLWAIGKPN--AITSLTGHE-----SPIESLTFDT-SERLLAAGSAS 91 (825)
T ss_pred hhhhhhhceeeeeccc-----eeeccCCCceeeccccccCCc--hhheeeccC-----CcceeeecCc-chhhhcccccC
Confidence 4688889999986666 89999985 77799987765 666788988 9999999997 89999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
|+|++||++..+.++++.+|...+.++.|+| +.+++.|+.|..+++||.+...+.. .+.. |...+..+.|+| +|.
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~-~~~s--~~~vv~~l~lsP-~Gr 167 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH-TYKS--HTRVVDVLRLSP-DGR 167 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee-eecC--CcceeEEEeecC-CCc
Confidence 9999999999999999999999999999994 8899999999999999999776433 3444 677899999999 999
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
+++.++.|.. ++|||... ++.+..+..|.+.+..+.|+|.. .++++|+.|+++++||+++.+ .+
T Consensus 168 ~v~~g~ed~t-vki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe-------------~I 231 (825)
T KOG0267|consen 168 WVASGGEDNT-VKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE-------------VI 231 (825)
T ss_pred eeeccCCcce-eeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE-------------Ee
Confidence 9999999998 99999987 77889999999999999999998 699999999999999999866 22
Q ss_pred -eeecccceeEEEEecCCCCceEEEe
Q 040307 305 -LCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 305 -~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
........|.+.+|+|++..+.++.
T Consensus 232 ~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 232 SSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eccCCccCCceeeeecCCceeeecCc
Confidence 2223467899999999997555443
No 142
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=178.53 Aligned_cols=274 Identities=11% Similarity=0.092 Sum_probs=200.2
Q ss_pred cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCCCc
Q 040307 44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNKTS 120 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~~ 120 (339)
...++.+|++............. ...-.++.--. . .+++++. . .+.+|.+.... ......--.
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~----~a~~~sl~~l~-~-----~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~P-- 81 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSY----LAQAASLTALN-N-----EYLLSAQLKRPLLHVWEILKKD--QVVQYIVLP-- 81 (476)
T ss_pred CCcceeEEecCCCceeEEecCcc----cccchhhhhhc-h-----hheeeecccCccccccccCchh--hhhhhcccc--
Confidence 45668887777665544431111 11111111111 1 3555554 3 99999997765 222111111
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc-
Q 040307 121 EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE- 198 (339)
Q Consensus 121 ~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~- 198 (339)
++|.+++-+| .|.+++.|+..|.|++|.+.+|+.+..+.+|-..|+|+.|+ ++.+|++|+.||.|.+|++...-
T Consensus 82 ---g~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 82 ---GPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ---cceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 6899999998 99999999999999999999999999999999999999999 89999999999999999875321
Q ss_pred -----ceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEE
Q 040307 199 -----RSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLC 272 (339)
Q Consensus 199 -----~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 272 (339)
.+..+.....|.-+|+++...+. ....+++++.|.+ +++||+.. +..+.++.. ...+.+++.+|.+ +.+.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~-g~LLlti~f-p~si~av~lDpae-~~~y 233 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSL-GVLLLTITF-PSSIKAVALDPAE-RVVY 233 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce-EEEEEecc-ceeeEEEec-CCcceeEEEcccc-cEEE
Confidence 12223333458899999988762 3458999999999 99999987 666666654 6789999999998 6999
Q ss_pred EEeCCCcEEEEEecCCCCCCC----CCCCCCcccceeeecccc--eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 273 SVADDSRALIWEVVGPGYRSG----NGGPSGDVEPELCYQSMA--EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 273 ~~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.|+.+|.|.+.++........ .+......+.....+|.. .|++++.+-||..|++|+.||.+.||++
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 999999999998877652111 111111222334557776 9999999999998999999999999986
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=179.24 Aligned_cols=250 Identities=17% Similarity=0.226 Sum_probs=189.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS 143 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 143 (339)
.-+.++|++++|+|.... .++|+|.. .|-+||+.+.+ ..-+..+..|. .+|.+|.|+|.+...+++.+
T Consensus 183 kv~~~Rit~l~fHPt~~~---~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-----~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENR---KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-----GPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred EecccceEEEEecccCcc---eEEEEccCCCcEEEEecCCCCCccCceEEeccCC-----ccccceEecCCChhheeeec
Confidence 357889999999998842 56677663 99999996332 33556667777 89999999998889999999
Q ss_pred CCCeEEEEECCCCeee--eeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307 144 VDTTCVIWDIDREILE--TQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK 220 (339)
Q Consensus 144 ~d~~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p 220 (339)
.||+|++-|++..... ..+......+.++.|+ +...++.+..=|...+||+|........... |+..|.+++++|
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l--h~kKI~sv~~NP 332 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL--HKKKITSVALNP 332 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh--hhcccceeecCC
Confidence 9999999999876533 3333244566778888 5566666666679999999998865544444 667999999999
Q ss_pred CCCCeEEEEeeCCCeEEEEecCCCCC---ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307 221 ADPRFMATVGMDSNKVVVLDIRFPTN---PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP 297 (339)
Q Consensus 221 ~~~~~l~~~~~d~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 297 (339)
....+||+++.|++ .+|||+|.... |+...-.|...|.+..|||.+. .|+|.+.|..|+|||..-..
T Consensus 333 ~~p~~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~dss~~s-------- 402 (498)
T KOG4328|consen 333 VCPWFLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFDSSCIS-------- 402 (498)
T ss_pred CCchheeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEeeccccc--------
Confidence 99999999999999 99999987432 3445567999999999999996 59999999999999995221
Q ss_pred CCcccceeeecccc------eeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 298 SGDVEPELCYQSMA------EINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 298 ~~~~~~~~~~~~~~------~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
...+|.....|.. .....+|.|+...++.+..-..|-|++
T Consensus 403 -a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 403 -AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred -ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 0113554444422 256789999887666666666666654
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-25 Score=181.52 Aligned_cols=263 Identities=15% Similarity=0.152 Sum_probs=201.6
Q ss_pred CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe--CC-cEEEEeecCCc--ceeEEEeecCCC
Q 040307 45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS--GD-SLRLWEIHDDR--TELKSLLNSNKT 119 (339)
Q Consensus 45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~--~~-~i~iw~~~~~~--~~~~~~~~~~~~ 119 (339)
...++|||+.......... ....+..+.++.|+... .+++.. +| .+++|.-.... ...+....+
T Consensus 11 gd~~kl~D~s~~~~~~~~~---~~t~~pg~~s~~w~~~n-----~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--- 79 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYV---HQTAEPGDFSFNWQRRN-----FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--- 79 (673)
T ss_pred CCceEEeecccccCccccc---cCCCCCcceeeeccccc-----eEEEeecCCceeEEEecccCCCCccceeecccc---
Confidence 4789999887655444331 12223348999999876 433332 24 88888765542 222333333
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc
Q 040307 120 SEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE 198 (339)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~ 198 (339)
..-.|++... ...++++|+..+.|+|||++...+.+.++.|.+.|+++.|+ .+.+||+++..|.|.|..+.++.
T Consensus 80 ----d~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 80 ----DNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred ----chHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence 2333454443 45899999999999999999777888889999999999999 88999999999999999999988
Q ss_pred ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307 199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS 278 (339)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 278 (339)
....+... ....+.-+.|+|....+|.+++.+|. |.+||+........-...|..+...|+|+|..+.+|++.+.|.
T Consensus 155 ~tt~f~~~--sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 155 KTTTFTID--SGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred cccceecC--CCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence 66655443 23456789999966777888888888 9999998755555566789999999999999989999999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.|.+||..... .........+...++|+++|.+|+++...|.|..|++
T Consensus 232 ki~~yD~~s~~-------------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 232 KINIYDIRSQA-------------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred eEEEeeccccc-------------ccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 99999999766 2333334557899999999998999999999999985
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.6e-24 Score=166.36 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=183.1
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT 146 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 146 (339)
......|.++.|+|... .+|+++-| .+++|++...+ ....++ |. .++.+++|. +...+++|+.||
T Consensus 10 npP~d~IS~v~f~~~~~----~LLvssWDgslrlYdv~~~~--l~~~~~-~~-----~plL~c~F~--d~~~~~~G~~dg 75 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSS----DLLVSSWDGSLRLYDVPANS--LKLKFK-HG-----APLLDCAFA--DESTIVTGGLDG 75 (323)
T ss_pred CCChhceeeEEEcCcCC----cEEEEeccCcEEEEeccchh--hhhhee-cC-----Cceeeeecc--CCceEEEeccCc
Confidence 45567899999998874 66666667 99999999875 444443 33 799999997 578899999999
Q ss_pred eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307 147 TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF 225 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 225 (339)
.|+.+|+++++.. .+..|..+|.|+.++ ..+.+++|+.|++|++||.|.......+. ....|.++.. .++.
T Consensus 76 ~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v---~g~~ 147 (323)
T KOG1036|consen 76 QVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDV---SGNR 147 (323)
T ss_pred eEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc----cCceEEEEec---cCCE
Confidence 9999999988744 455799999999999 67899999999999999999844322222 2347887776 6788
Q ss_pred EEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 226 MATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 226 l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
|++|+.+.. +.+||+++...+.+.-. .-+..+++|++.|+++ =++.++-||+|.+=.++..+ +... ...
T Consensus 148 LvVg~~~r~-v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~---~~~s-----kky 217 (323)
T KOG1036|consen 148 LVVGTSDRK-VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSE---EAQS-----KKY 217 (323)
T ss_pred EEEeecCce-EEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCch---HHhh-----hce
Confidence 999999988 99999999776653221 2345789999999774 67888899998886555542 0000 011
Q ss_pred eeecc---------cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 LCYQS---------MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 ~~~~~---------~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+.-| --+|++++|+|-...+++++.||.|.+|++
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 22222 247999999999888999999999999985
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=1.6e-24 Score=172.12 Aligned_cols=287 Identities=17% Similarity=0.271 Sum_probs=217.7
Q ss_pred ccCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCC-----cccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 16 AQWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETS-----DFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
...+++++.|.++ .. .||+|+ .|..|+||.++.... .......+ ..|...|+++.|+|++ .
T Consensus 12 ~~~pv~s~dfq~n---~~~~laT~G----~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~g-----e 78 (434)
T KOG1009|consen 12 DHEPVYSVDFQKN---SLNKLATAG----GDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDG-----E 78 (434)
T ss_pred CCCceEEEEeccC---cccceeccc----CccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCc-----C
Confidence 4579999999999 44 999999 799999998764322 23332233 5799999999999999 8
Q ss_pred eEEEeCC--cEEEEeec--------C------CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 040307 90 IVATSGD--SLRLWEIH--------D------DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI 153 (339)
Q Consensus 90 ~la~~~~--~i~iw~~~--------~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~ 153 (339)
+||+|+| .|.+|... + ..+.....+.+|. ..|..++|+| ++.++++++.|..+++||+
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~-----~diydL~Ws~-d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR-----DDIYDLAWSP-DSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc-----cchhhhhccC-CCceeeeeeccceEEEEEe
Confidence 9999997 99999876 2 1244556677777 8999999998 9999999999999999999
Q ss_pred CCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE--------------------EeCCCCCCC
Q 040307 154 DREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII--------------------YENPVQDCP 212 (339)
Q Consensus 154 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------------------~~~~~~~~~ 212 (339)
..+.....+..|...+..++|. -++++++-+.|...+.+.+...+..... +....-+.-
T Consensus 153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 9999999999999999999999 5788898888887777776544321111 111111123
Q ss_pred eEEEEEecCCCCeEEEEee----CCC----eEEEEecCCCCCceEEEecCCCCeeEEEeccCC-----------------
Q 040307 213 LLRLEWNKADPRFMATVGM----DSN----KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY----------------- 267 (339)
Q Consensus 213 v~~~~~~p~~~~~l~~~~~----d~~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~----------------- 267 (339)
...++|+| +|.++++... .+. ..++|+-.....|...+.....++..+.|+|-.
T Consensus 233 FrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 233 FRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccccccc
Confidence 45678998 8888876432 111 257777766677888888877777788777631
Q ss_pred CCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 268 GRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 268 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
...+|.++ .+.|.|||.+... |+... -|-..|++++|+++|..++..+.||...+
T Consensus 312 rlvfaiAt-~~svyvydtq~~~-------------P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLE-------------PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ceEEEEee-cceEEEecccccc-------------ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 12344444 5689999999977 66433 47889999999999999999999997655
No 147
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=2.4e-23 Score=169.89 Aligned_cols=279 Identities=12% Similarity=0.151 Sum_probs=205.5
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
.++.|....|+|. +.+++++.+ .+.+.+|.+........ ...++......|.|++|.+++ +.+..-+
T Consensus 199 sne~v~~a~FHPt--d~nliit~G-----k~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~eng-----dviTgDS 265 (626)
T KOG2106|consen 199 SNEVVFLATFHPT--DPNLIITCG-----KGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENG-----DVITGDS 265 (626)
T ss_pred ccceEEEEEeccC--CCcEEEEeC-----CceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCC-----CEEeecC
Confidence 3567889999998 345556655 89999976654432222 122222334679999999999 6665555
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC------------------
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE------------------ 156 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~------------------ 156 (339)
+ .|.||+..+.+ ..+....|. +.|.+++... ++. |++|+.|..|..||-.-.
T Consensus 266 ~G~i~Iw~~~~~~--~~k~~~aH~-----ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 266 GGNILIWSKGTNR--ISKQVHAHD-----GGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred CceEEEEeCCCce--EEeEeeecC-----CceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 5 99999997776 444444777 8999999984 655 555999999999983210
Q ss_pred ----------------------eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307 157 ----------------------ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL 213 (339)
Q Consensus 157 ----------------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v 213 (339)
.......+|.+....++.+ ..+.+++++.|+.+++|+ ..+ +.-... -..++
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-~~wt~~---~~d~~ 410 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-LEWTKI---IEDPA 410 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-eeEEEE---ecCce
Confidence 0111123577788888888 688999999999999999 222 221111 23588
Q ss_pred EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC
Q 040307 214 LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG 293 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 293 (339)
.++.|+| .| .+|.|+..|. ..+.|..+ ...+..... ..+++.++|+|+| .+||.|+.|+.|+||.+....
T Consensus 411 ~~~~fhp-sg-~va~Gt~~G~-w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g---- 480 (626)
T KOG2106|consen 411 ECADFHP-SG-VVAVGTATGR-WFVLDTET-QDLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANG---- 480 (626)
T ss_pred eEeeccC-cc-eEEEeeccce-EEEEeccc-ceeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCC----
Confidence 9999999 77 9999999998 99999987 444444444 8899999999999 599999999999999999877
Q ss_pred CCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 294 NGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
..-...-.-+..+|+.+.||+|++++.+-+.|-.|.+|.
T Consensus 481 ------~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 481 ------RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ------cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 011112223458999999999999999999999999884
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.1e-24 Score=183.95 Aligned_cols=301 Identities=14% Similarity=0.149 Sum_probs=221.4
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc-----------------ccee---------eEee
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF-----------------SADN---------RLIF 68 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~-----------------~~~~---------~~~~ 68 (339)
.|.+.|.+++|.....+.-+||+++ .|..|+||++...+.+- .... .+..
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 4789999999997733245788888 89999999876443110 0000 1124
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
+|.+.|+++.|+|.+. .+|.++.| ++.+|..++....-+...+-....+-.....+.-|+| +++.+++-+..|.
T Consensus 265 GHeDWV~sv~W~p~~~----~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGL----DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGG 339 (764)
T ss_pred CcccceEEEEEccchh----hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCc
Confidence 8999999999999993 45555557 9999998776421222221111111114578899998 8999999999999
Q ss_pred EEEEECCCCe---eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecCC
Q 040307 148 CVIWDIDREI---LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 148 v~i~d~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
.++|...... ....+.+|.+.|++++|+ .|.+|++.+.|.+-|+|-.-..+ .-..+..++.|...++|+++-+ .
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~ 418 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-E 418 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-C
Confidence 9999943322 334457999999999999 69999999999999998765222 2334444556888999999985 4
Q ss_pred CCeEEEEeeCCCeEEEEecCCCC---------------------------------------------------------
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPT--------------------------------------------------------- 245 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~--------------------------------------------------------- 245 (339)
...+++|....- +++|+....-
T Consensus 419 ~~~FVSgAdEKV-lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 419 DLQFVSGADEKV-LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred Cceeeeccccee-eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 566666666666 9999764210
Q ss_pred ------------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCCCCCCCCCCCCccc
Q 040307 246 ------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 246 ------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
..++++-+|...|++++.+|++ +++|+++.. ..|++|+..+.. +
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~------------~ 564 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWL------------Q 564 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchh------------h
Confidence 1122345888899999999999 699998843 469999999987 3
Q ss_pred ceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 303 PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 303 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...+..|.-.|+.++||||+++|++++.|+++.+|.+
T Consensus 565 ~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred hheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 4467789999999999999999999999999999973
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=4.4e-25 Score=168.58 Aligned_cols=209 Identities=14% Similarity=0.194 Sum_probs=165.1
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe------------ee---eeeeccCCceeEEEec--CCcEEEEEeCC
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI------------LE---TQLVAHDREVYDISWG--GFNVFASVSGD 186 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~------------~~---~~~~~~~~~v~~~~~~--~~~~l~~~~~d 186 (339)
+.|+.+...+..++++++|+.||.|.+||++... ++ .--.+|...|.++.|- +...|.+++.|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 7899999998899999999999999999997532 11 0113577889999998 67799999999
Q ss_pred CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC-C-eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP-R-FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA 264 (339)
Q Consensus 187 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~-~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 264 (339)
.++++||..+.+....+.- ++.|.+-+|+|-.. . ++|+|..+-. |++-|+.. +..-..+.+|.+.|.++.|+
T Consensus 124 htlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~-VrLCDi~S-Gs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQ-VRLCDIAS-GSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEecCCCc-EEEEeccC-CcceeeeccccCceEEEEec
Confidence 9999999999885554332 46889999998332 3 5555555555 99999998 77889999999999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEecCCCC--CCCCCCCCCcccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 265 PLYGRRLCSVADDSRALIWEVVGPGY--RSGNGGPSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 265 p~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|..+.+|++|+.||.|++||++.... +..+... ....|. ....|.+.|+.++|..++.++++.+.|..+++|+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn-~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN-TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeeccc-CccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99988999999999999999987641 0000000 011122 24468899999999999999999999999999974
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4e-24 Score=164.78 Aligned_cols=286 Identities=14% Similarity=0.134 Sum_probs=205.9
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
+...++.+.. ..|+.|++- |.+||+|. .+|.|.|||+..-...- . ..+|..+|++++||++|
T Consensus 16 el~~tld~~~-a~~~~Fs~~---G~~lAvGc----~nG~vvI~D~~T~~iar----~-lsaH~~pi~sl~WS~dg----- 77 (405)
T KOG1273|consen 16 ELTHTLDNPL-AECCQFSRW---GDYLAVGC----ANGRVVIYDFDTFRIAR----M-LSAHVRPITSLCWSRDG----- 77 (405)
T ss_pred hhceeccCCc-cceEEeccC---cceeeeec----cCCcEEEEEccccchhh----h-hhccccceeEEEecCCC-----
Confidence 3444555555 889999999 99999999 79999999887654222 2 26899999999999999
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
+.|++++ | .|.+||+..+. ++..+.-. ++|+...|+|.+.+.+++.-.+..-.+-++..+.....-....
T Consensus 78 r~LltsS~D~si~lwDl~~gs--~l~rirf~------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGS--PLKRIRFD------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred CEeeeecCCceeEEEeccCCC--ceeEEEcc------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence 8888887 5 99999999998 66666543 7999999999877777776666666666665432111111111
Q ss_pred C----ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 167 R----EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 167 ~----~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
+ ...+..|. .|+++++|...|.+.++|..+.+....+... ....|..+.++. .|+.|+.-+.|.. |+.|++
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--s~~~IK~I~~s~-~g~~liiNtsDRv-IR~ye~ 225 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--SVQAIKQIIVSR-KGRFLIINTSDRV-IRTYEI 225 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--hheeeeEEEEec-cCcEEEEecCCce-EEEEeh
Confidence 1 12223455 6999999999999999999998765554443 235788899985 9999999999998 999998
Q ss_pred CCCC------C--ceEEEec--CCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCccccee-eecc
Q 040307 242 RFPT------N--PVVVLSK--HEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQS 309 (339)
Q Consensus 242 ~~~~------~--~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~ 309 (339)
+... . +.++++. .+..-.+++|+.+|+ +++.++ .-..++||.-..+. ... ..+.
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge-Yv~a~s~~aHaLYIWE~~~Gs-------------LVKILhG~ 291 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE-YVCAGSARAHALYIWEKSIGS-------------LVKILHGT 291 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc-EEEeccccceeEEEEecCCcc-------------eeeeecCC
Confidence 7311 1 1111111 123456889999996 555555 45689999999887 332 2233
Q ss_pred c-ceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 310 M-AEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 310 ~-~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
. ....++.|+|-.+.+++. ..|.+++|.+
T Consensus 292 kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 292 KGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred chhheeecccccceeeeeec-cCCceEEEEe
Confidence 3 568899999998744444 8899999963
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.3e-26 Score=200.97 Aligned_cols=260 Identities=18% Similarity=0.302 Sum_probs=210.1
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccE----EEEeeeccccCCeEEEEecCC--CCCcccceeeEeecCCCCceEEEEcCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSR----LAVGSFLEDYSNKIELVNFNP--ETSDFSADNRLIFDHPYTPTNIAFFPS 82 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~----la~g~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~~~~ 82 (339)
+....+....+.+.++|.+. +.. ||.|. +||.|.+|+-+. .+......... ..|.+.|..|.|++.
T Consensus 56 k~~~s~~s~~rF~kL~W~~~---g~~~~GlIaGG~----edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~ 127 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSY---GSHSHGLIAGGL----EDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPF 127 (1049)
T ss_pred cccccccccccceeeeeccc---CCCccceeeccc----cCCceEEecchhhccCcchHHHhhh-cccCCceeeeecccc
Confidence 45666677788999999998 555 56666 899999988765 23333322223 579999999999999
Q ss_pred CCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 040307 83 EETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET 160 (339)
Q Consensus 83 ~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 160 (339)
.. .+||+|++ .|.|||+++.+ .-..+.. ......|.+++|+-...+.|++++.+|.+.|||++..+.+.
T Consensus 128 q~----nlLASGa~~geI~iWDlnn~~--tP~~~~~---~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 128 QG----NLLASGADDGEILIWDLNKPE--TPFTPGS---QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred CC----ceeeccCCCCcEEEeccCCcC--CCCCCCC---CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 84 69999985 99999999865 2222211 11227899999997677899999999999999999988877
Q ss_pred eeeccCC--ceeEEEecC--CcEEEEEeCC---CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 161 QLVAHDR--EVYDISWGG--FNVFASVSGD---CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 161 ~~~~~~~--~v~~~~~~~--~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
.+..+.+ .+..++|+| ...+++++.| -.|.+||+|....+..+++. |...|.++.|++.+..+|++++.|+
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~ 276 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDN 276 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCC
Confidence 7765554 477899993 5567777665 36999999998888777766 8899999999998889999999999
Q ss_pred CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
. |.+|+..+ ++.+..+.....++..+.|+|..+.+++.++-||.|.||.+....
T Consensus 277 ~-ii~wN~~t-gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 R-IICWNPNT-GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred C-eeEecCCC-ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9 99999998 777888888888999999999998899999999999999998876
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=9.1e-25 Score=185.23 Aligned_cols=251 Identities=16% Similarity=0.272 Sum_probs=206.3
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
.+.....+.+++.||+ +++||+|. .-|+++||++..-...... ..|...|.||.|+...- .-++||
T Consensus 455 ~~d~r~G~R~~~vSp~---gqhLAsGD----r~GnlrVy~Lq~l~~~~~~-----eAHesEilcLeyS~p~~--~~kLLA 520 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPD---GQHLASGD----RGGNLRVYDLQELEYTCFM-----EAHESEILCLEYSFPVL--TNKLLA 520 (1080)
T ss_pred hcCcccceEEEEECCC---cceecccC----ccCceEEEEehhhhhhhhe-----ecccceeEEEeecCchh--hhHhhh
Confidence 3445578999999999 99999999 7999999888765444433 68999999999986421 117899
Q ss_pred EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCCeeeeeeec----
Q 040307 93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDT--RRVATCSVDTTCVIWDIDREILETQLVA---- 164 (339)
Q Consensus 93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~---- 164 (339)
+++ | .|+|||+... +.++.++.+|. ..|+++.|.. ++ ..+++++.|..|..--.+.......+..
T Consensus 521 SasrdRlIHV~Dv~rn-y~l~qtld~HS-----ssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRN-YDLVQTLDGHS-----SSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred hccCCceEEEEecccc-cchhhhhcccc-----cceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccc
Confidence 998 4 9999999754 45788999998 9999999985 55 6788999998887543332211222222
Q ss_pred -cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307 165 -HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 165 -~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~ 242 (339)
....+.+|+.. ...++++++.|+.|+|||+.+++....+.....+++....+...| .|.|+++...|.+ +.++|..
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdkt-l~~~Df~ 671 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKT-LCFVDFV 671 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCc-eEEEEec
Confidence 23467889888 588999999999999999999998887777777888899999999 9999999999999 9999998
Q ss_pred CCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 243 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
. ++++.++.+|...|+.+.|.+|- +.|++.+.||.|.||.+...
T Consensus 672 s-gEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 672 S-GECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred c-chhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECchh
Confidence 8 78899999999999999999998 69999999999999998753
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=9e-24 Score=163.41 Aligned_cols=285 Identities=16% Similarity=0.237 Sum_probs=204.6
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC--------cccceeeEeecCCCCceEEEEcCCCCCCCC--C
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS--------DFSADNRLIFDHPYTPTNIAFFPSEETLNP--D 89 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~ 89 (339)
...+.|+|| |..|++-+ .|+.+.+|++..+.. .+.....+.......|..-+|-+.-+..+| .
T Consensus 52 ~kgckWSPD---GSciL~~s----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPD---GSCILSLS----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCC---CceEEeec----ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 346789999 99999988 799999998764321 112222333455667888888632211111 6
Q ss_pred eEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC-CCCeee--eeee-
Q 040307 90 IVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI-DREILE--TQLV- 163 (339)
Q Consensus 90 ~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~-~~~~~~--~~~~- 163 (339)
++|+.+. -|++||.-+++ ....+........-.+..+++|+| ||.+|++|. ...|+++|+ +.|+.. ....
T Consensus 125 l~a~ssr~~PIh~wdaftG~--lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGK--LRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccc--cccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 7777774 99999999998 444443322111113556899998 999998765 689999999 555422 1111
Q ss_pred ----ccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307 164 ----AHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV 237 (339)
Q Consensus 164 ----~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~ 237 (339)
+..+.+.+++|+ +...++.++...++-||.-........+. +|.+.|+.+.|++ +|+.|++|....-+|.
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL~~~e-dGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHLQWCE-DGNKLFSGARKDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeEEecc-CcCeecccccCCCeEE
Confidence 236778999999 46789999999999888877766444433 3789999999998 8899999887665699
Q ss_pred EEecCCCCCceEEEecCCC-CeeEEEe--ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeE
Q 040307 238 VLDIRFPTNPVVVLSKHEG-SVNGISW--APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEIN 314 (339)
Q Consensus 238 i~d~~~~~~~~~~~~~~~~-~v~~~~~--~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 314 (339)
.||+|....++..+..|.. .-..|.| .|++ .+|++|+.||.|++||++... -++.....+..-++
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~g-----------n~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLG-----------NEVSVTGNYSDTVN 344 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCC-----------Cccccccccccccc
Confidence 9999998889999988876 3344544 5788 599999999999999999965 12445556788899
Q ss_pred EEEecCCCCceEEEecCC
Q 040307 315 VVRWSPLELDWIAIAFVN 332 (339)
Q Consensus 315 ~~~~~p~~~~l~~~~~d~ 332 (339)
.++++|-=+ +++++...
T Consensus 345 gvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 345 GVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred ceecCcccc-eeeeccCc
Confidence 999999865 45554443
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3.7e-22 Score=166.33 Aligned_cols=268 Identities=14% Similarity=0.093 Sum_probs=183.7
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEE-EEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRL-AVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~l-a~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
+++.+..+.....+.+++|+|+ +..+ +++. .++.|++|+... .+... .+ .....+..+.|+|++
T Consensus 20 t~~~~~~~~~~~~~~~l~~~~d---g~~l~~~~~----~~~~v~~~d~~~--~~~~~--~~--~~~~~~~~~~~~~~g-- 84 (300)
T TIGR03866 20 TLEVTRTFPVGQRPRGITLSKD---GKLLYVCAS----DSDTIQVIDLAT--GEVIG--TL--PSGPDPELFALHPNG-- 84 (300)
T ss_pred CCceEEEEECCCCCCceEECCC---CCEEEEEEC----CCCeEEEEECCC--CcEEE--ec--cCCCCccEEEECCCC--
Confidence 3455666666666888999999 8866 4555 689999977653 33322 12 222345788999999
Q ss_pred CCCCeE-EEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-eEEEEECCCCeeeee
Q 040307 86 LNPDIV-ATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-TCVIWDIDREILETQ 161 (339)
Q Consensus 86 ~~~~~l-a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~ 161 (339)
+.+ ++++ + .+++||+.+.+ .+..+... ..+.+++|+| +++++++++.++ .+.+||.++++....
T Consensus 85 ---~~l~~~~~~~~~l~~~d~~~~~--~~~~~~~~------~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 85 ---KILYIANEDDNLVTVIDIETRK--VLAEIPVG------VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred ---CEEEEEcCCCCeEEEEECCCCe--EEeEeeCC------CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 555 4444 4 99999998865 55555432 3467899998 999999888765 567789988876655
Q ss_pred eeccCCceeEEEec-CCcEEE-EEeCCCcEEEEECCCCcceeeEEeC-C---CCCCCeEEEEEecCCCCeEEEE-eeCCC
Q 040307 162 LVAHDREVYDISWG-GFNVFA-SVSGDCSVRVFDLRDKERSTIIYEN-P---VQDCPLLRLEWNKADPRFMATV-GMDSN 234 (339)
Q Consensus 162 ~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~-~---~~~~~v~~~~~~p~~~~~l~~~-~~d~~ 234 (339)
+. ......+++|+ ++.+|+ ++..++.|++||+++.+....+... + ........++|+| ++++++++ +.++.
T Consensus 153 ~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 153 VL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANR 230 (300)
T ss_pred EE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCe
Confidence 43 23355788999 677665 4456899999999987644332211 0 0112345688998 77765543 44555
Q ss_pred eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307 235 KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI 313 (339)
Q Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 313 (339)
+.+||++. .+.+..+. +...+.+++|+|++. +|+++ +.+|.|++||+...+ ++.........
T Consensus 231 -i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~-~l~~~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~ 293 (300)
T TIGR03866 231 -VAVVDAKT-YEVLDYLL-VGQRVWQLAFTPDEK-YLLTTNGVSNDVSVIDVAALK-------------VIKSIKVGRLP 293 (300)
T ss_pred -EEEEECCC-CcEEEEEE-eCCCcceEEECCCCC-EEEEEcCCCCeEEEEECCCCc-------------EEEEEEccccc
Confidence 99999976 44444433 455789999999994 77665 568999999999987 44444455667
Q ss_pred EEEEecC
Q 040307 314 NVVRWSP 320 (339)
Q Consensus 314 ~~~~~~p 320 (339)
+.++++|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888775
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-23 Score=180.88 Aligned_cols=239 Identities=19% Similarity=0.288 Sum_probs=190.8
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..|...-+.|+|.|++ .+|.+++ + .|++|+.....- .-.++..+. ..|.+++- ...+|++|+.+
T Consensus 10 yaht~G~t~i~~d~~g-----efi~tcgsdg~ir~~~~~sd~e-~P~ti~~~g-----~~v~~ia~---~s~~f~~~s~~ 75 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-----EFICTCGSDGDIRKWKTNSDEE-EPETIDISG-----ELVSSIAC---YSNHFLTGSEQ 75 (933)
T ss_pred hhccCceEEEEEcCCC-----CEEEEecCCCceEEeecCCccc-CCchhhccC-----ceeEEEee---cccceEEeecc
Confidence 5789999999999999 6777666 6 999999877631 222233233 67777776 45699999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
++|.+|.+..++.-..+....-++++++|+ ++++++.|+.|-.|++.++........+ .+ |+.+|.++.|+| .++
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-rg--h~apVl~l~~~p-~~~ 151 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-RG--HDAPVLQLSYDP-KGN 151 (933)
T ss_pred ceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-cc--cCCceeeeeEcC-CCC
Confidence 999999999888666666677789999999 8999999999999999999887744443 33 789999999999 999
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEec-------C-CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSK-------H-EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG 296 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-------~-~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 296 (339)
+||+.+.||. |++||+.. +....++.+ . ...+..++|+|++. .++..+.|+.|++|+.....
T Consensus 152 fLAvss~dG~-v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we------- 221 (933)
T KOG1274|consen 152 FLAVSSCDGK-VQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWE------- 221 (933)
T ss_pred EEEEEecCce-EEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCce-------
Confidence 9999999999 99999986 443333332 1 34567899999984 77888889999999999988
Q ss_pred CCCcccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 297 PSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 297 ~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
... ....+...+..++|+|.|.||+|++.||.|.||++
T Consensus 222 -----~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 222 -----LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred -----eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 112 22234445999999999999999999999999985
No 156
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=159.02 Aligned_cols=246 Identities=17% Similarity=0.311 Sum_probs=190.5
Q ss_pred eeeccCCeeEEEeeecCC--cccEEEEeeeccccCCeEEEEecCCCCCcccceeeE----eecCCCCceEEEEcCCCCCC
Q 040307 13 TYMAQWPISTVAWSVRHD--RKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL----IFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~--~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~~~ 86 (339)
+|.|+.|++.+.|.|+.. ..++||+.+ ..+++|....+.........+ ...+..++++..|+.-.
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d--- 162 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD--- 162 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc------CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC---
Confidence 478999999999999953 335777755 799999998765544432222 23567889999999876
Q ss_pred CCCeEEEeC-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV 163 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 163 (339)
|+++.+++ | +..|||++.+. ......+-.|. .+|..++|....-+.||+.+.||.|++||++..+....+.
T Consensus 163 -p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD-----KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 163 -PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD-----KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred -cceeEeecccCeEEEEEEeeccccceeeEEEecC-----cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 38888888 7 99999999973 22455667777 8999999996456799999999999999998876443332
Q ss_pred ---ccCCceeEEEec--CCcEEEEEeCC-CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307 164 ---AHDREVYDISWG--GFNVFASVSGD-CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV 237 (339)
Q Consensus 164 ---~~~~~v~~~~~~--~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~ 237 (339)
....+...++|+ +.+++|+-..| ..|.+.|+|.+..+...... |++.|+.++|.|.....|.+++.|.. +.
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~q-al 313 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQ-AL 313 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcce-EE
Confidence 224578899999 68888887766 56999999998866665555 89999999999999999999999988 99
Q ss_pred EEecCCCCC-----ceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 238 VLDIRFPTN-----PVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 238 i~d~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
+||+..... |+.... -.+.|+.+.|+|..+..++.+...
T Consensus 314 iWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred EEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 999976443 333333 357899999998877788887743
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.9e-23 Score=157.99 Aligned_cols=254 Identities=19% Similarity=0.213 Sum_probs=173.1
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|++++|+.|| +.||+++ | .|+||++++-+.+..+.++..- ++ ...+.+.|.|.-...+++.-..
T Consensus 83 KgH~~~vt~~~FsSdG-----K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~-dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDG-----KKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EY-DHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hccCCceeeeEEcCCC-----ceeEEEeCCceEEEEecchhhhhhhhHhhccc--cC-CCceEEEECCCcceEEEEEccC
Confidence 5899999999999999 8999887 4 9999999875421111111111 11 3567899999334455566667
Q ss_pred CeEEEEECCCCe---e------ee---eeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCC
Q 040307 146 TTCVIWDIDREI---L------ET---QLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCP 212 (339)
Q Consensus 146 ~~v~i~d~~~~~---~------~~---~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 212 (339)
.++++|.+...+ . .- .-..|.-.+..+-.. .+.+|++++.|..|.+|+++ ++.+..+-. ....
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt---nq~~ 230 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT---NQSS 230 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc---cccc
Confidence 789999874322 0 00 012344555555555 68899999999999999999 553444332 2345
Q ss_pred eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307 213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 213 v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~ 285 (339)
-+..+.+| +|+++++++.... |++|..--.. ..+.++.+|...|..++|+++. ..+++.+.||+++|||+
T Consensus 231 n~~aavSP-~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 231 NYDAAVSP-DGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccceeeCC-CCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeec
Confidence 67789999 9999999999988 9999864211 2356789999999999999998 69999999999999998
Q ss_pred cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
+-.-...++..... .-+.......+....++.+|.|. +++.+....|++|.
T Consensus 308 dVrY~~~qDpk~Lk-~g~~pl~aag~~p~RL~lsP~g~-~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 308 DVRYEAGQDPKILK-EGSAPLHAAGSEPVRLELSPSGD-SLAVSFGSDLKVFA 358 (420)
T ss_pred cceEecCCCchHhh-cCCcchhhcCCCceEEEeCCCCc-EEEeecCCceEEEE
Confidence 75431000000000 00111112233445899999997 77777777777763
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=9.9e-24 Score=163.43 Aligned_cols=249 Identities=22% Similarity=0.335 Sum_probs=185.2
Q ss_pred ccCCeeEEEeeecCCc-ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 16 AQWPISTVAWSVRHDR-KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~-~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
++...+.++|+-+.+. ..+||+|+ .-|.|+| ++...+.+.. .+ .+|...|+.+.|.|+.. ++++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G----~~GvIrV--id~~~~~~~~--~~-~ghG~sINeik~~p~~~----qlvls~ 154 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGG----YLGVIRV--IDVVSGQCSK--NY-RGHGGSINEIKFHPDRP----QLVLSA 154 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeec----ceeEEEE--Eecchhhhcc--ce-eccCccchhhhcCCCCC----cEEEEe
Confidence 4567889999988653 45788888 6999999 5555555554 33 78999999999999984 899999
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee------e-------
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL------E------- 159 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~------~------- 159 (339)
+ | .|++|++++.. ++..+.+- ++|...|.+++|++ ++.+|++++.|.++++|++...+. .
T Consensus 155 SkD~svRlwnI~~~~--Cv~VfGG~--egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 155 SKDHSVRLWNIQTDV--CVAVFGGV--EGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred cCCceEEEEeccCCe--EEEEeccc--ccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 8 5 99999999987 77777652 24449999999998 999999999999999999984310 0
Q ss_pred ---------e------eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCc-----------ceeeEEeCCCCCCCe
Q 040307 160 ---------T------QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKE-----------RSTIIYENPVQDCPL 213 (339)
Q Consensus 160 ---------~------~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~v 213 (339)
. +-.-|...|-|+.|- ++++++-+.++.|..|.....+ ....+...+.....+
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHH-hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 0 112366777777776 7899999999999999883221 112222222233455
Q ss_pred EEE--EEecCCCCeEEEEeeCCCeEEEEecCCCCCceE-EEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 214 LRL--EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 214 ~~~--~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
.-+ +|+| -++.||.|...|. +.+||++....+.. ++.. ....|+..+|+.++ .+|+....|+.|.-||..
T Consensus 309 Wfirf~~d~-~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 309 WFIRFAFDP-WQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeecH-HHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 544 4565 6789999999998 99999998554322 2222 23579999999999 589999999999999864
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.92 E-value=8.4e-23 Score=161.97 Aligned_cols=209 Identities=16% Similarity=0.215 Sum_probs=166.2
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA 140 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 140 (339)
-+|.++|..++|+|.++ ..+|+|++ +|.||++..+. .+++..+.+|. ..|.-++|+|.-.+.|+
T Consensus 78 ~GHt~~vLDi~w~PfnD----~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~-----rrVg~V~wHPtA~NVLl 148 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFND----CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ-----RRVGLVQWHPTAPNVLL 148 (472)
T ss_pred cCccccccccccCccCC----ceeecCCCCceEEEEECCCcccccCcccceEEEeecc-----eeEEEEeecccchhhHh
Confidence 68999999999999886 78999995 99999997753 35678889998 99999999998889999
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307 141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (339)
+++.|.+|.+|++.+++.+..+. |.+.|.++.|+ +|.+|++.+.|..|+|||.++++....-... .......+.|-
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h--eG~k~~Raifl 225 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH--EGAKPARAIFL 225 (472)
T ss_pred hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc--cCCCcceeEEe
Confidence 99999999999999999888887 99999999999 9999999999999999999999854443221 22345566676
Q ss_pred cCCCCeEEEEeeC--CCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 220 KADPRFMATVGMD--SNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 220 p~~~~~l~~~~~d--~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
. ++.++.+|-.. ..++.+||.....+|+....- ....|.---|.|+...+.++|-.|+.|+.|.+....
T Consensus 226 ~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 226 A-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred c-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4 77755444322 125999999887777543322 234566667888875444556689999999999876
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.5e-23 Score=173.36 Aligned_cols=257 Identities=17% Similarity=0.293 Sum_probs=184.8
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|...|..++|-|. ...|++++ .|.++++|++.... +.....+ ++|...|.+++|.|.+. .+|++|
T Consensus 98 aH~nAifDl~wapg---e~~lVsas----GDsT~r~Wdvk~s~--l~G~~~~-~GH~~SvkS~cf~~~n~----~vF~tG 163 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPG---ESLLVSAS----GDSTIRPWDVKTSR--LVGGRLN-LGHTGSVKSECFMPTNP----AVFCTG 163 (720)
T ss_pred cccceeEeeccCCC---ceeEEEcc----CCceeeeeeeccce--eecceee-cccccccchhhhccCCC----cceeec
Confidence 47789999999998 88899998 79999997766543 3332223 89999999999999985 889999
Q ss_pred C-C-cEEEEeecCCcce------------------eEEEee--cCC----CccCCCCEEEEEEcCCCCCEEEEEeC-CCe
Q 040307 95 G-D-SLRLWEIHDDRTE------------------LKSLLN--SNK----TSEFSSAITSFDWAGFDTRRVATCSV-DTT 147 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~------------------~~~~~~--~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~ 147 (339)
+ | .|.|||+...... +...+. .++ .....+.|+.+.|- |...||+++. |+.
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~ 241 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADST 241 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcc
Confidence 8 4 9999998754200 000000 011 11122345566663 8899999988 999
Q ss_pred EEEEECCCCeeee--------eeecc---CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceee-EEeCCCCCCCeE
Q 040307 148 CVIWDIDREILET--------QLVAH---DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTI-IYENPVQDCPLL 214 (339)
Q Consensus 148 v~i~d~~~~~~~~--------~~~~~---~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~v~ 214 (339)
|+|||++...... .+..| .-.+.++... -|.+|++.+.|+.|++|++++...... .+.+........
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV 321 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee
Confidence 9999998754222 12223 2345566555 477777777899999999998763222 222211111122
Q ss_pred EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.-..+| ++.++++|+.|.. .++|.+.....+...+.+|...|++++|.|..-.-+++++.|..++||++..+-
T Consensus 322 ks~lSp-d~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 322 KSELSP-DDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eeecCC-CCceEeccCCCcc-eeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 234566 8999999999999 999999998889999999999999999999765568888999999999996644
No 161
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-23 Score=171.85 Aligned_cols=239 Identities=15% Similarity=0.239 Sum_probs=199.7
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
-..-|.++...|| ++.|++|+ +-.++.|||+...+..+.. .+ ....-.+++|+.+||.+ -.+++++
T Consensus 464 rdnyiRSckL~pd---grtLivGG----eastlsiWDLAapTprika--el-tssapaCyALa~spDak----vcFsccs 529 (705)
T KOG0639|consen 464 RDNYIRSCKLLPD---GRTLIVGG----EASTLSIWDLAAPTPRIKA--EL-TSSAPACYALAISPDAK----VCFSCCS 529 (705)
T ss_pred cccceeeeEecCC---CceEEecc----ccceeeeeeccCCCcchhh--hc-CCcchhhhhhhcCCccc----eeeeecc
Confidence 3567999999999 99999999 7999999998887776665 22 23345688999999994 4455566
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
| .|.|||+.+.. .++.|++|. ..+.||..++ +|..|-+|+-|.+|+.||+++++.+.... ..+.|.++.+
T Consensus 530 dGnI~vwDLhnq~--~VrqfqGht-----DGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~ 600 (705)
T KOG0639|consen 530 DGNIAVWDLHNQT--LVRQFQGHT-----DGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY 600 (705)
T ss_pred CCcEEEEEcccce--eeecccCCC-----CCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence 7 99999999987 899999999 8999999997 99999999999999999999998776653 5678999999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK 253 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~ 253 (339)
+ .+++++.|-..+.+.+......++... ..|+.-|.++.|.+ .|+.+++.+.|+- +..|.+.. +..+.....
T Consensus 601 cP~~dWlavGMens~vevlh~skp~kyql----hlheScVLSlKFa~-cGkwfvStGkDnl-LnawrtPy-GasiFqskE 673 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKPEKYQL----HLHESCVLSLKFAY-CGKWFVSTGKDNL-LNAWRTPY-GASIFQSKE 673 (705)
T ss_pred CCCccceeeecccCcEEEEecCCccceee----cccccEEEEEEecc-cCceeeecCchhh-hhhccCcc-ccceeeccc
Confidence 9 699999999999999888777653222 23678899999998 9999999999998 99998876 444554443
Q ss_pred CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 254 HEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
...|.++..|.+. ++++||+.|....||.+.
T Consensus 674 -~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 674 -SSSVLSCDISFDD-KYIVTGSGDKKATVYEVI 704 (705)
T ss_pred -cCcceeeeeccCc-eEEEecCCCcceEEEEEe
Confidence 5689999999998 799999999999888763
No 162
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.9e-25 Score=186.31 Aligned_cols=230 Identities=19% Similarity=0.241 Sum_probs=193.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|...+.++..-.. ++.+++|+ .+..+-+|.+........ + .+|..+|.+|.|++.. .+|++|+
T Consensus 27 hsaav~~lk~~~s---~r~~~~Gg----~~~k~~L~~i~kp~~i~S----~-~~hespIeSl~f~~~E-----~Llaags 89 (825)
T KOG0267|consen 27 HSAAVGCLKIRKS---SRSLVTGG----EDEKVNLWAIGKPNAITS----L-TGHESPIESLTFDTSE-----RLLAAGS 89 (825)
T ss_pred hhhhhceeeeecc---ceeeccCC----CceeeccccccCCchhhe----e-eccCCcceeeecCcch-----hhhcccc
Confidence 4556777777555 78999999 789999977665444333 2 7899999999999998 8888887
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
+ +|++||++..+ .++++.+|. ..+..+.|+| -+.++++|+.|+.+++||++...+...+.+|...+..+.
T Consensus 90 asgtiK~wDleeAk--~vrtLtgh~-----~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAK--IVRTLTGHL-----LNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred cCCceeeeehhhhh--hhhhhhccc-----cCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 4 99999999887 778999998 8999999999 899999999999999999998889999999999999999
Q ss_pred ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
|+ +|.+++.++.|..+++||++.++.... +. .|.+.+.++.|+| ..-+++.|+.|+. +++||+++ .+.+....
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-f~--~~e~~v~sle~hp-~e~Lla~Gs~d~t-v~f~dlet-fe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKE-FK--SHEGKVQSLEFHP-LEVLLAPGSSDRT-VRFWDLET-FEVISSGK 235 (825)
T ss_pred ecCCCceeeccCCcceeeeecccccccccc-cc--cccccccccccCc-hhhhhccCCCCce-eeeeccce-eEEeeccC
Confidence 99 688999999999999999998884433 33 3778999999998 8889999999999 99999986 44455555
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
.....|.+.+|+|++ +.+++|...
T Consensus 236 ~~~~~v~~~~fn~~~-~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDG-KIVLSGEQI 259 (825)
T ss_pred CccCCceeeeecCCc-eeeecCchh
Confidence 556789999999999 577777654
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=7.3e-23 Score=158.41 Aligned_cols=255 Identities=19% Similarity=0.219 Sum_probs=191.5
Q ss_pred CceeeeeeccCCeeEEEeeec----CCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCC---ceEEEEc
Q 040307 8 KPGVHTYMAQWPISTVAWSVR----HDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYT---PTNIAFF 80 (339)
Q Consensus 8 ~~~~~~~~~~~~v~~i~~sp~----~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~~ 80 (339)
......+.....|+..+|-+. ..+..++|+.+ .+.-|++|+.-....+... .. ..|.+. ..+|+|+
T Consensus 95 ~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss----r~~PIh~wdaftG~lraSy--~~-ydh~de~taAhsL~Fs 167 (406)
T KOG2919|consen 95 KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS----RDQPIHLWDAFTGKLRASY--RA-YDHQDEYTAAHSLQFS 167 (406)
T ss_pred cceeEEeccCCEEEEEEeeeccccCCCccceeeecc----ccCceeeeeccccccccch--hh-hhhHHhhhhheeEEec
Confidence 345566667788999999842 11277888888 7999999765544433322 22 455544 4689999
Q ss_pred CCCCCCCCCeEEEeCC-cEEEEee-cCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 040307 81 PSEETLNPDIVATSGD-SLRLWEI-HDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL 158 (339)
Q Consensus 81 ~~~~~~~~~~la~~~~-~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 158 (339)
||| ..|.+|-. .|+++|+ +.+..........+...+..+.|.+++|+|.+...++.|+....+-||.-..+++
T Consensus 168 ~DG-----eqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p 242 (406)
T KOG2919|consen 168 PDG-----EQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP 242 (406)
T ss_pred CCC-----CeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc
Confidence 999 78888876 9999999 4443222322222323333478999999998888999999999999999888889
Q ss_pred eeeeeccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307 159 ETQLVAHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEWNKADPRFMATVGMDSNK 235 (339)
Q Consensus 159 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d~~~ 235 (339)
+..+-+|.+.|+.++|+ +++.|++|++ |-.|..||+|..+.+....... .....-.-....| .+++|++|+.+|.
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~- 320 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGS- 320 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCcc-
Confidence 99999999999999999 8999999875 6789999999876444333221 1112222344466 8899999999999
Q ss_pred EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
|++||++..+.+...+..|...++.++++|--+ ++|+++..
T Consensus 321 V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 321 VRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred EEEEecCCCCCcccccccccccccceecCcccc-eeeeccCc
Confidence 999999998888888888999999999999985 88888754
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=155.35 Aligned_cols=247 Identities=18% Similarity=0.209 Sum_probs=183.4
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT 146 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 146 (339)
.+.. -.|+.|++.| .+||.|. + .|.|||+.+.. .-..+.+|. .+|++++||+ +|+.|++++.|.
T Consensus 22 d~~~-a~~~~Fs~~G-----~~lAvGc~nG~vvI~D~~T~~--iar~lsaH~-----~pi~sl~WS~-dgr~LltsS~D~ 87 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWG-----DYLAVGCANGRVVIYDFDTFR--IARMLSAHV-----RPITSLCWSR-DGRKLLTSSRDW 87 (405)
T ss_pred cCCc-cceEEeccCc-----ceeeeeccCCcEEEEEccccc--hhhhhhccc-----cceeEEEecC-CCCEeeeecCCc
Confidence 3444 7899999999 8999997 4 99999999986 667788888 9999999998 999999999999
Q ss_pred eEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC-CCeEEEEEecCCC
Q 040307 147 TCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD-CPLLRLEWNKADP 223 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~ 223 (339)
.|.+||+..|.+++.+. ..++|+...|+ +.+..++.-.+..-.+-++..+.....-...+... ....+..|.+ .|
T Consensus 88 si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g 165 (405)
T KOG1273|consen 88 SIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RG 165 (405)
T ss_pred eeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CC
Confidence 99999999999998886 67899999999 35555555556566677776543222211111111 1122335776 89
Q ss_pred CeEEEEeeCCCeEEEEecCCCCCceEEEecCC-CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307 224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
+++++|...|. +.++|..+ .+++..++... ..|.++.++..| ..|+.-+.|..|+.|+++.-.. + +....++
T Consensus 166 ~yIitGtsKGk-llv~~a~t-~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~-~---~r~~e~e 238 (405)
T KOG1273|consen 166 KYIITGTSKGK-LLVYDAET-LECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDD-E---GRDGEVE 238 (405)
T ss_pred CEEEEecCcce-EEEEecch-heeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcc-c---CccCCcC
Confidence 99999999998 99999987 56777776655 789999999999 5999999999999999985431 0 0000111
Q ss_pred cee-ee--cccceeEEEEecCCCCceEEEe-cCCeEEEEe
Q 040307 303 PEL-CY--QSMAEINVVRWSPLELDWIAIA-FVNKLQLLK 338 (339)
Q Consensus 303 ~~~-~~--~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~ 338 (339)
|.. .+ -....=.+++|+.+|.++++++ ....++||.
T Consensus 239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 211 11 1233456789999999888776 456688885
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-21 Score=164.54 Aligned_cols=239 Identities=14% Similarity=0.216 Sum_probs=192.1
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
.+.+|.+++|+.+. +.||.+- + .|.||++..+- -+...+.++. .+.|.+++|+ ++..|++.+.+|.
T Consensus 24 ~Ps~I~slA~s~kS-----~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~----drsIE~L~W~--e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKS-----NQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPE----DRSIESLAWA--EGGRLFSSGLSGS 91 (691)
T ss_pred eccceEEEEEeccC-----CceeeeccCCcEEEEccCCCc-eeeEEEecCC----CCceeeEEEc--cCCeEEeecCCce
Confidence 46789999999998 7788775 4 99999998863 3455566654 2789999998 5778889999999
Q ss_pred EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307 148 CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 226 (339)
|.-||+.+.+....+....+.|++++.+ .+..++.|+.||.+..++.......... .....++.+.+++|+| ++..+
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l~rq~sRvLslsw~~-~~~~i 169 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-SLMRQKSRVLSLSWNP-TGTKI 169 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-ecccccceEEEEEecC-CccEE
Confidence 9999999999999998889999999999 5788999999997777777665532222 2223458999999998 89999
Q ss_pred EEEeeCCCeEEEEecCCCCCceEEE-------ec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC
Q 040307 227 ATVGMDSNKVVVLDIRFPTNPVVVL-------SK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS 298 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~~~~~~~-------~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 298 (339)
+.|+.||. |++||...+.. +... .. ...-|+++.|-.++ .|++|..-|.|.+||...+.
T Consensus 170 ~~Gs~Dg~-Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT--------- 236 (691)
T KOG2048|consen 170 AGGSIDGV-IRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT--------- 236 (691)
T ss_pred EecccCce-EEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc---------
Confidence 99999999 99999988443 3311 11 22357889888886 79999999999999999988
Q ss_pred CcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
......-|.+.|.+++-.+++.++++++.|+.+.-|+
T Consensus 237 ---LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 237 ---LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred ---hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 2335556899999999999998999999999876654
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=168.93 Aligned_cols=277 Identities=13% Similarity=0.131 Sum_probs=202.3
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
++.....|+.++|-|| |..|+.+. ++.+.|||.+..+.... + .+|.+.|+|++|+.+| +.+|
T Consensus 8 r~~~~hci~d~afkPD---GsqL~lAA-----g~rlliyD~ndG~llqt----L-KgHKDtVycVAys~dG-----krFA 69 (1081)
T KOG1538|consen 8 RDKAEHCINDIAFKPD---GTQLILAA-----GSRLLVYDTSDGTLLQP----L-KGHKDTVYCVAYAKDG-----KRFA 69 (1081)
T ss_pred hcccccchheeEECCC---CceEEEec-----CCEEEEEeCCCcccccc----c-ccccceEEEEEEccCC-----ceec
Confidence 3333458999999999 98888888 78999977665443333 2 7999999999999999 8999
Q ss_pred EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
+|+ | .|.+|+..-.. .+. -.|. ..|.||.|+| -.+.|++++- ...-+|...... +...+ ....+.
T Consensus 70 SG~aDK~VI~W~~klEG--~Lk--YSH~-----D~IQCMsFNP-~~h~LasCsL-sdFglWS~~qK~-V~K~k-ss~R~~ 136 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEG--ILK--YSHN-----DAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQKS-VSKHK-SSSRII 136 (1081)
T ss_pred cCCCceeEEEecccccc--eee--eccC-----CeeeEeecCc-hHHHhhhcch-hhccccChhhhh-HHhhh-hheeEE
Confidence 998 6 99999865432 111 1344 8999999999 7788888875 345678765432 33332 345688
Q ss_pred EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC----CeEEEEeeCCCeEEEEecCCCC
Q 040307 171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP----RFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
+.+|. +|.+|+.|-.+|+|.+-+-...+ ...+..+.+...+|.+++|+|..+ ..+++..-..+ +.+|.+. +
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~Ls--G 212 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEE-KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQLS--G 212 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCc-ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEec--c
Confidence 89999 99999999999999998544333 344444445678999999999554 36666666666 7777665 2
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW 325 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 325 (339)
+.+..-..-.-.-.++.+.|+|+ +++.|+.|+.+.+|--+.-. .-..-.....|+.++..|+++++
T Consensus 213 ~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~Gvr-------------LGTvg~~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 213 KQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRDGVR-------------LGTVGEQDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred eeecccccCCCCchhheeccCCc-EEEEccCCCceEEEeecCeE-------------EeeccccceeEEEEEEccCCceE
Confidence 33332233334567899999995 99999999999998554422 22333467789999999999999
Q ss_pred EEEecCCeEEEEe
Q 040307 326 IAIAFVNKLQLLK 338 (339)
Q Consensus 326 ~~~~~d~~v~~w~ 338 (339)
+.+|.||+|--|+
T Consensus 279 ~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 279 VVGCQDGTIACYN 291 (1081)
T ss_pred EEEEccCeeehhh
Confidence 9999999997665
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=3.5e-21 Score=166.37 Aligned_cols=270 Identities=17% Similarity=0.240 Sum_probs=196.0
Q ss_pred CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCC
Q 040307 46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFS 123 (339)
Q Consensus 46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~ 123 (339)
+.+.||++.... .... .+.....|.++.|+|... .++|.|.. .|.+||+......+...+..+ ...|.
T Consensus 222 ~~~~vW~~~~p~-~Pe~----~~~~~s~v~~~~f~p~~p----~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~-~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-TPEL----VLESPSEVTCLKFCPFDP----NLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL-EVSHS 291 (555)
T ss_pred ceEEEEecCCCC-CceE----EEecCCceeEEEeccCCc----ceEEeeccCceEEEEEccCCCCCCCcccccc-cccCC
Confidence 478898877652 2222 356788999999999984 77777763 999999988763222222211 11233
Q ss_pred CCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCCee------eeeee------ccCCceeEEEec--CCcEEEEEeCCC
Q 040307 124 SAITSFDWAGFDT--RRVATCSVDTTCVIWDIDREIL------ETQLV------AHDREVYDISWG--GFNVFASVSGDC 187 (339)
Q Consensus 124 ~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~------~~~~~------~~~~~v~~~~~~--~~~~l~~~~~d~ 187 (339)
.+++.+.|-. +. .-|++++.||.|+.|+++.-.. ..... .....+++++|. +.+.|+.|+.+|
T Consensus 292 ~~v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred cCeEEEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 8999999975 44 4499999999999998864321 00111 123467899998 688899999999
Q ss_pred cEEEEECCCCccee-e----EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEE
Q 040307 188 SVRVFDLRDKERST-I----IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGIS 262 (339)
Q Consensus 188 ~i~i~d~~~~~~~~-~----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 262 (339)
.|.-=.-...+... . ......|.++|.++.++|....++++++ |-+ ++||.......|+..+..+...|++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~-vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWT-VRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cce-eEeccccCCCCcchhhhhccceeeeeE
Confidence 88763322222111 1 1122237789999999997777887777 777 999998855788888888888899999
Q ss_pred eccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 263 WAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|||..+.+++++..||.+.+||+.... ..|.. ..-+....+.+.|++.|+.++.+...|.+++|+|
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~~~-----------~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQDD-----------EEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhccc-----------cCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 999998899999999999999998876 23432 2233566788999999987777889999999986
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-20 Score=140.97 Aligned_cols=281 Identities=14% Similarity=0.138 Sum_probs=191.7
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC-------CcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET-------SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
..|.+-+|+|. +++|++|. .+|.|.+..++.-. ++... .-+..|.++|+.++|.. ++
T Consensus 11 ~tvf~qa~sp~---~~~l~agn----~~G~iav~sl~sl~s~sa~~~gk~~i--v~eqahdgpiy~~~f~d-------~~ 74 (325)
T KOG0649|consen 11 NTVFAQAISPS---KQYLFAGN----LFGDIAVLSLKSLDSGSAEPPGKLKI--VPEQAHDGPIYYLAFHD-------DF 74 (325)
T ss_pred HHHHHHhhCCc---ceEEEEec----CCCeEEEEEehhhhccccCCCCCcce--eeccccCCCeeeeeeeh-------hh
Confidence 35777899999 99999999 79999998776311 11111 12368999999999983 57
Q ss_pred EEEeCC-cEEEEeecCCcc----eeEE--EeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307 91 VATSGD-SLRLWEIHDDRT----ELKS--LLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV 163 (339)
Q Consensus 91 la~~~~-~i~iw~~~~~~~----~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 163 (339)
|.+|+| .|+=|..+.... +.+- ...-+........|++|-..| ..+-++.++.|+.++-||+++|+..+.++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 888887 888887765420 0110 011111111126789999998 55555555689999999999999999999
Q ss_pred ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-------CCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307 164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-------VQDCPLLRLEWNKADPRFMATVGMDSNK 235 (339)
Q Consensus 164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~d~~~ 235 (339)
+|++.|.++.-- ....+++|+.||++++||+++.+....+.... .-...|-+++- +...|++|+.-.
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgGp~-- 228 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGGPK-- 228 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCCCc--
Confidence 999999999885 56688999999999999999998766553321 11233445553 557777765443
Q ss_pred EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEE
Q 040307 236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV 315 (339)
Q Consensus 236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 315 (339)
+.+|.++. .++...+.. ...+..+.|..+ .+++++..+.|.-|.+...- +. .........++
T Consensus 229 lslwhLrs-se~t~vfpi-pa~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gvl------------~a-~ip~~s~~c~s 290 (325)
T KOG0649|consen 229 LSLWHLRS-SESTCVFPI-PARVHLVDFVDD---CVLIGGEGNHVQSYTLNGVL------------QA-NIPVESTACYS 290 (325)
T ss_pred eeEEeccC-CCceEEEec-ccceeEeeeecc---eEEEeccccceeeeeeccEE------------EE-eccCCccceee
Confidence 99999998 566666654 567888888765 57777777889999877633 11 11122223455
Q ss_pred EEecCCCCceE-EEecCCeEEEEe
Q 040307 316 VRWSPLELDWI-AIAFVNKLQLLK 338 (339)
Q Consensus 316 ~~~~p~~~~l~-~~~~d~~v~~w~ 338 (339)
..|+..--.++ +++..+.+.+++
T Consensus 291 ~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 291 ASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ecccCCceEEEEecccceeeeeee
Confidence 55554322344 466777777753
No 169
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.8e-22 Score=157.89 Aligned_cols=246 Identities=15% Similarity=0.166 Sum_probs=192.7
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT 141 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 141 (339)
.+|.+.|+++.|+.++ ++||+|+| .+++|+++..- .+++.....| |...|.+++|.. .+..+.+
T Consensus 53 ~~H~GCiNAlqFS~N~-----~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~----H~SNIF~L~F~~-~N~~~~S 122 (609)
T KOG4227|consen 53 REHTGCINALQFSHND-----RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP----HRSNIFSLEFDL-ENRFLYS 122 (609)
T ss_pred hhhccccceeeeccCC-----eEEeecCCcceeeeechHHHHhhcCCCCceeccCc----cccceEEEEEcc-CCeeEec
Confidence 5899999999999999 99999996 99999987531 1244333221 237999999996 8889999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeccC---CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEE
Q 040307 142 CSVDTTCVIWDIDREILETQLVAHD---REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLE 217 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 217 (339)
|..+++|.+.|+++.+.+..+. |. +.|..+..+ -.+.|++.+.++.|.+||.+........+..........++-
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 9999999999999998887774 44 489999999 488999999999999999998875555454444556789999
Q ss_pred EecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC
Q 040307 218 WNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291 (339)
Q Consensus 218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~ 291 (339)
|+|....+|++.+..++ +.+||.+....++....+. ...-.++.|+|.| ..|.+--....-.+||+-...
T Consensus 202 F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R-- 277 (609)
T KOG4227|consen 202 FHPETPALILVNSETGG-PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQR-- 277 (609)
T ss_pred ecCCCceeEEeccccCC-CCceeeccccchHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeeccc--
Confidence 99999999999999999 9999999877666543332 2234688999999 477776666677788888865
Q ss_pred CCCCCCCCcccceeeeccc-------ceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 292 SGNGGPSGDVEPELCYQSM-------AEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.++....|. ..|.+++|.-+.. +++++.+-.|++|++
T Consensus 278 ----------~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 278 ----------CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred ----------ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence 234444442 3477889987764 788889999999986
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=2.9e-21 Score=153.33 Aligned_cols=242 Identities=18% Similarity=0.260 Sum_probs=180.5
Q ss_pred CceEEEEcCCCCCCCCCeEEEe-----CCcEEEEeecC-Cc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 73 TPTNIAFFPSEETLNPDIVATS-----GDSLRLWEIHD-DR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~-----~~~i~iw~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.|+...|...--.-||+++|.. ++...+.-+.. ++ ....-.+.+|+ ++|..++|+|.+.+.||+|++|
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt-----~~vLDi~w~PfnD~vIASgSeD 103 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHT-----APVLDIDWCPFNDCVIASGSED 103 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCcc-----ccccccccCccCCceeecCCCC
Confidence 3556666544333455777652 22333333222 21 11223456777 9999999999999999999999
Q ss_pred CeEEEEECCCC-------eeeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307 146 TTCVIWDIDRE-------ILETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL 216 (339)
Q Consensus 146 ~~v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 216 (339)
.+|.||++..+ +++..+.+|...|--++|+| .+.|++++.|.+|.+|++.+++....+. |...|.++
T Consensus 104 ~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~ 179 (472)
T KOG0303|consen 104 TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSM 179 (472)
T ss_pred ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEE
Confidence 99999998654 35777889999999999994 8899999999999999999998555432 77899999
Q ss_pred EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC-CeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCCCCC
Q 040307 217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG-SVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPGYRS 292 (339)
Q Consensus 217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~~~~ 292 (339)
.|+. +|.+|++.+.|.. |+|||.+. ++.+..-.+|.+ .-..+.|-.++ .++.||- .+..+.+||....+
T Consensus 180 sfn~-dGs~l~TtckDKk-vRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~--- 252 (472)
T KOG0303|consen 180 SFNR-DGSLLCTTCKDKK-VRVIDPRR-GTVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLE--- 252 (472)
T ss_pred Eecc-CCceeeeecccce-eEEEcCCC-CcEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCccccc---
Confidence 9996 9999999999999 99999998 667777777876 34567788888 4555544 56789999999887
Q ss_pred CCCCCCCcccceeee--cccceeEEEEecCCCCceEEE-ecCCeEEEEeC
Q 040307 293 GNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAI-AFVNKLQLLKV 339 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~-~~d~~v~~w~v 339 (339)
+|.... .....|.=-=|.|+...+..+ -.|+.||.|.+
T Consensus 253 ---------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 253 ---------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred ---------CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 454333 345556666678887755544 48999999874
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.2e-21 Score=155.89 Aligned_cols=243 Identities=14% Similarity=0.166 Sum_probs=186.1
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCC
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDT 146 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~ 146 (339)
..+.|+++.|+|.. .+|.+++ | +++||.++......+..+.-.. .+|.+.+|.| +|. .+++++...
T Consensus 212 s~~~I~sv~FHp~~-----plllvaG~d~~lrifqvDGk~N~~lqS~~l~~-----fPi~~a~f~p-~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA-----PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-----FPIQKAEFAP-NGHSVIFTSGRRK 280 (514)
T ss_pred CcCCceEEEecCCC-----ceEEEecCCCcEEEEEecCccChhheeeeecc-----CccceeeecC-CCceEEEecccce
Confidence 35689999999999 7777777 6 9999999877644555555544 7999999998 777 999999999
Q ss_pred eEEEEECCCCeee--eeeeccC-CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 147 TCVIWDIDREILE--TQLVAHD-REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 147 ~v~i~d~~~~~~~--~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
.++.||+.+.+.. ....++. ..+.....+ ++++|+..+..|.|.+.-..+++....+.. .+.+..++|+. +
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----eG~v~~~~fsS-d 355 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----EGVVSDFTFSS-D 355 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee----ccEEeeEEEec-C
Confidence 9999999887632 2333443 345667777 799999999999999999998886665544 37899999996 8
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCe--eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSV--NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
++.|++++.+|. |.+||++. ..++..+.. .+.| ++++.++++ .+||+|+..|.|.|||..+... ...
T Consensus 356 sk~l~~~~~~Ge-V~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-------s~~ 424 (514)
T KOG2055|consen 356 SKELLASGGTGE-VYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-------STN 424 (514)
T ss_pred CcEEEEEcCCce-EEEEecCC-cceEEEEee-cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc-------cCC
Confidence 888888888887 99999998 466676664 3444 567778999 5999999999999999766430 001
Q ss_pred ccce-eeecccceeEEEEecCCCCceEEEe--cCCeEEEEeC
Q 040307 301 VEPE-LCYQSMAEINVVRWSPLELDWIAIA--FVNKLQLLKV 339 (339)
Q Consensus 301 ~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~--~d~~v~~w~v 339 (339)
..|+ .+..-...|+++.|+|+.+.|+.++ ..+.+|+-++
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 1233 3334567899999999998665554 5677887654
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.2e-20 Score=148.56 Aligned_cols=302 Identities=12% Similarity=0.088 Sum_probs=213.6
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC--cccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS--DFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
.|.+.|.++.||.+ +++||+|+ .|-.+++|.++..-- ...........|...|.||+|.... ..|.
T Consensus 54 ~H~GCiNAlqFS~N---~~~L~SGG----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-----~~~~ 121 (609)
T KOG4227|consen 54 EHTGCINALQFSHN---DRFLASGG----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-----RFLY 121 (609)
T ss_pred hhccccceeeeccC---CeEEeecC----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-----eeEe
Confidence 46789999999999 99999999 899999988763211 1111113334677889999999888 8888
Q ss_pred EeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eee--eeeccCC
Q 040307 93 TSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LET--QLVAHDR 167 (339)
Q Consensus 93 ~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~--~~~~~~~ 167 (339)
+|+. +|.+-|+++.+ .+..+.... ..+.|..+..+| ..+.|++.+.++.|.+||.+... ... .+.....
T Consensus 122 SG~~~~~VI~HDiEt~q--si~V~~~~~---~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQ--SIYVANENN---NRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred cCCCcceeEeeecccce--eeeeecccC---cccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 8885 99999999987 444443221 116899999999 68899999999999999997654 221 2223445
Q ss_pred ceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeC----CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 168 EVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYEN----PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 168 ~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
....+.|+ ...+|++.+..+-+-+||.+.+..+...+.. +.....-.++.|+| +|..+++--.... -.+||+
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~-P~~~D~ 273 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKC-PLYFDF 273 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCC-CEEeee
Confidence 67788898 4789999999999999999988754432221 11123346789998 7777766555555 678888
Q ss_pred CCCCCceEEEecCC------CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC--------CCCCCCCCCcc---cce
Q 040307 242 RFPTNPVVVLSKHE------GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY--------RSGNGGPSGDV---EPE 304 (339)
Q Consensus 242 ~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~---~~~ 304 (339)
-....++.++.... ..+.+++|--+. -+++|+.+-.|++|.+..... +.+++.|.... ...
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 76444444443111 256788888774 599999999999999976542 11111111111 122
Q ss_pred eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.+.+|..-++.|.|+|....|++.+-.+.++||.
T Consensus 352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred EEecccccccceeecCCcceEeccchhhheeccc
Confidence 4568999999999999987677788999999995
No 173
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.3e-20 Score=157.19 Aligned_cols=238 Identities=16% Similarity=0.182 Sum_probs=183.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|.+|...|.| ..||+|++ +|+||.+.++. ++.++.-. +.|.+++|+|....-+++.+..
T Consensus 397 rGHtg~Vr~iSvdp~G-----~wlasGsdDGtvriWEi~TgR--cvr~~~~d------~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSG-----EWLASGSDDGTVRIWEIATGR--CVRTVQFD------SEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eccCCeEEEEEecCCc-----ceeeecCCCCcEEEEEeecce--EEEEEeec------ceeEEEEecCCCCceeEEEEec
Confidence 5899999999999999 89999995 99999999998 77776654 5899999998433333333444
Q ss_pred CeEEEEECCCC-------------------------------------eeeeeeeccCCceeEEEec-CCcEEEEEeCC-
Q 040307 146 TTCVIWDIDRE-------------------------------------ILETQLVAHDREVYDISWG-GFNVFASVSGD- 186 (339)
Q Consensus 146 ~~v~i~d~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d- 186 (339)
..+.|.+..-| .-+...-.|...|..+.|+ .|++|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 44554433211 0112222477889999999 89999988764
Q ss_pred --CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307 187 --CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA 264 (339)
Q Consensus 187 --~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 264 (339)
..|.|.++........+.. ..+.+.++.|+| ...+|++++... |+|||+.. +..+..+......|.+++.+
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~k---skG~vq~v~FHP-s~p~lfVaTq~~--vRiYdL~k-qelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRK---SKGLVQRVKFHP-SKPYLFVATQRS--VRIYDLSK-QELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred CcceEEEEecccccccCchhh---cCCceeEEEecC-CCceEEEEeccc--eEEEehhH-HHHHHHHhcCCeeeeeeeec
Confidence 5688999987764433323 357899999999 667777766654 99999987 66677777777899999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 265 PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 265 p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
|.|. -|+.|+.|+.+..||+.... .|. ....|...+++|+||+.-+.+++++.|+++.|+.
T Consensus 617 p~GD-nli~gs~d~k~~WfDldlss------------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 617 PNGD-NLILGSYDKKMCWFDLDLSS------------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CCCC-eEEEecCCCeeEEEEcccCc------------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9995 88899999999999999876 344 5667889999999999998777788889998875
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=3.4e-18 Score=149.21 Aligned_cols=286 Identities=20% Similarity=0.279 Sum_probs=212.4
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEE-cCCCCCCCCC-e
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAF-FPSEETLNPD-I 90 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~~-~ 90 (339)
...+...+.++.|.+. +..++.++ .++.+.+|++........ .+...+...+..+.+ ++++ . +
T Consensus 61 ~~~~~~~i~~~~~~~~---~~~~~~~~----~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~ 125 (466)
T COG2319 61 LRGHEDSITSIAFSPD---GELLLSGS----SDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDG-----NSI 125 (466)
T ss_pred eeeccceEEEEEECCC---CcEEEEec----CCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCc-----ceE
Confidence 3457789999999999 99999888 699999988776541222 221112246777777 7777 5 4
Q ss_pred EEEeC--C-cEEEEeecC-CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeeecc
Q 040307 91 VATSG--D-SLRLWEIHD-DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 91 la~~~--~-~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~ 165 (339)
++..+ + .+.+|+... .. ....+..|. ..|..+.|+| ++..+++++. |+.+++|++..+..+..+..|
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGK--LIRTLEGHS-----ESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred EeccCCCCccEEEEEecCCCe--EEEEEecCc-----ccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 55433 4 999999987 43 677778887 8899999998 8888888885 999999999988888888889
Q ss_pred CCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 166 DREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 166 ~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
...+.+++|+ ++. .+++++.|+.|++||.+........... |.... ...|+| ++.++++++.++. +++|+++.
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~~d~~-~~~~~~~~ 272 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG--HSDSV-VSSFSP-DGSLLASGSSDGT-IRLWDLRS 272 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC--CCcce-eEeECC-CCCEEEEecCCCc-EEEeeecC
Confidence 9999999999 555 5555599999999988855533322222 33343 228888 6688889999999 99999987
Q ss_pred CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee--ecccceeEEEEecCC
Q 040307 244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC--YQSMAEINVVRWSPL 321 (339)
Q Consensus 244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~ 321 (339)
....+..+..|...+.++.|+|++ ..+++++.|+.+.+|+..... ..... ..|...+..+.|.++
T Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
T COG2319 273 SSSLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK------------LLSSLTLKGHEGPVSSLSFSPD 339 (466)
T ss_pred CCcEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc------------eEEEeeecccCCceEEEEECCC
Confidence 554344456788999999999987 477778888899999887766 12222 356667999999433
Q ss_pred CCceEEE-ecCCeEEEEeC
Q 040307 322 ELDWIAI-AFVNKLQLLKV 339 (339)
Q Consensus 322 ~~~l~~~-~~d~~v~~w~v 339 (339)
+..++.+ ..|+.+++|++
T Consensus 340 ~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 340 GSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred CCEEEEeecCCCcEEeeec
Confidence 2345554 57888888864
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.6e-20 Score=143.98 Aligned_cols=281 Identities=15% Similarity=0.203 Sum_probs=190.7
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE 109 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~ 109 (339)
...+|++. ..|.|+||++.. +.... .+ .+++..++.+.|.... .|..+.+|+ | +|++||++.....
T Consensus 40 e~~vav~l----Sngsv~lyd~~t--g~~l~--~f-k~~~~~~N~vrf~~~d---s~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 40 ETAVAVSL----SNGSVRLYDKGT--GQLLE--EF-KGPPATTNGVRFISCD---SPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred ceeEEEEe----cCCeEEEEeccc--hhhhh--ee-cCCCCcccceEEecCC---CCCeeEEeccCCeEEEEEeecchhh
Confidence 35688887 799999987776 33332 23 5788889999998753 136666665 6 9999999987633
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC----CCeEEEEECCCCee-eeee-eccCCceeEEEec--CCcEEE
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV----DTTCVIWDIDREIL-ETQL-VAHDREVYDISWG--GFNVFA 181 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~-~~~~-~~~~~~v~~~~~~--~~~~l~ 181 (339)
.......+. ..+..+++.+- ..+.+++|.. +-.|.+||++..+. +..+ ..|.+.|++++|+ +.++|+
T Consensus 108 a~~~~~~~~----~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 108 ARISWTQQS----GTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred hheeccCCC----CCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence 444444443 14677888774 6788888764 67899999987764 5554 5799999999999 689999
Q ss_pred EEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC------
Q 040307 182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE------ 255 (339)
Q Consensus 182 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~------ 255 (339)
+|+.||-|.+||+........+...-.+...|..+.|....-+.|.+-+...+ ..+|++.... +...+....
T Consensus 183 SGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~-~~~~~~~~~~~~~d~ 260 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGS-EETWLENPDVSADDL 260 (376)
T ss_pred eecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCC-hhhcccCccchhhhH
Confidence 99999999999998875333333222355779999998633346777788888 9999998743 333332110
Q ss_pred ------CCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCCCCCCCCCCCCCcccce-eee-cccceeEEEEecCCCCceE
Q 040307 256 ------GSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGPGYRSGNGGPSGDVEPE-LCY-QSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 256 ------~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~p~~~~l~ 326 (339)
..+... .+|.+...++.++. -|...++-+..... .....+. ... +|..-|.++.|...+..++
T Consensus 261 r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s-------~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 261 RKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSS-------GSLLTEPAILQGGHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred Hhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeeccc-------ccccCccccccCCcHHHHHHHhhhcccceee
Confidence 011111 22433345555554 56666666553220 0011222 333 4777889999998888888
Q ss_pred EEecCCeEEEEeC
Q 040307 327 AIAFVNKLQLLKV 339 (339)
Q Consensus 327 ~~~~d~~v~~w~v 339 (339)
+++.||.|.+|++
T Consensus 333 TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 333 TGGEDGLLQAWKV 345 (376)
T ss_pred ccCCCceEEEEec
Confidence 9999999999983
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.5e-21 Score=148.02 Aligned_cols=192 Identities=15% Similarity=0.201 Sum_probs=157.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307 137 RRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL 213 (339)
Q Consensus 137 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v 213 (339)
..+|++-..|.|++||..+++.+..++++...++.++|. ..+.+.+|+.||+|++||+|.......+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 568888899999999999999999999999999999998 26789999999999999999987666655543334577
Q ss_pred EEEEEecCCCCeEEEEeeCCC---eEEEEecCCCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 214 LRLEWNKADPRFMATVGMDSN---KVVVLDIRFPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~~~d~~---~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+++.+- .++++++|..--. .+.+||+|...+++.. ...|...|+++.|+|..+.+|++||.||.|.|||++...
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7888764 7778887754322 4999999997775554 457999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCcccce-eeecccceeEEEEecCCC-CceEEEecCCeEEEEeC
Q 040307 290 YRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLE-LDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~-~~l~~~~~d~~v~~w~v 339 (339)
...++ ....+...|..+.|..++ ..+.+.+...+..+|++
T Consensus 200 ----------EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 200 ----------EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred ----------chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 12233 556788889999999987 23778889999999874
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=2.8e-19 Score=141.08 Aligned_cols=234 Identities=14% Similarity=0.181 Sum_probs=174.2
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--CeE
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--TTC 148 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~v 148 (339)
..++.+.|+.+. .+|..|+. ..++|+.+..+. +.....+ . ..|..+-|+. .++|..+.+ ..+
T Consensus 6 ~ti~~~~~Nqd~-----~~lsvGs~~Gyk~~~~~~~~k-~~~~~~~-~-----~~IvEmLFSS---SLvaiV~~~qpr~L 70 (391)
T KOG2110|consen 6 PTINFIGFNQDS-----TLLSVGSKDGYKIFSCSPFEK-CFSKDTE-G-----VSIVEMLFSS---SLVAIVSIKQPRKL 70 (391)
T ss_pred cceeeeeeccce-----eEEEccCCCceeEEecCchHH-hhcccCC-C-----eEEEEeeccc---ceeEEEecCCCceE
Confidence 456677799888 78888885 889998876541 1111111 1 4566777764 566665554 459
Q ss_pred EEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307 149 VIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
++++.+.+..+..+. ...+|.++.++ .+.|+++=.+ .|+|||++..+....+...+.+...+..+.+++ .+.++|.
T Consensus 71 kv~~~Kk~~~ICe~~-fpt~IL~VrmN-r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAy 146 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIF-FPTSILAVRMN-RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAY 146 (391)
T ss_pred EEEEcccCceEEEEe-cCCceEEEEEc-cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEe
Confidence 999998888777775 56789999998 4445555444 499999999997777666644555566666664 5567765
Q ss_pred -EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc-EEEEEecCCCCCCCCCCCCCcccceee
Q 040307 229 -VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR-ALIWEVVGPGYRSGNGGPSGDVEPELC 306 (339)
Q Consensus 229 -~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (339)
++.+.+.|.+||+.+ -+++..+..|++.+.+++|+|+| .+|||+++.|+ |||+.+..++ .+..
T Consensus 147 p~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~-------------kl~e 211 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQ-------------KLYE 211 (391)
T ss_pred cCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCcc-------------Eeee
Confidence 444444599999987 67889999999999999999999 69999999986 8999998887 2222
Q ss_pred e---cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 307 Y---QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 307 ~---~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+ .-...|.+++|+|++++|.+++..++|++|++
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 2 12567999999999998888999999999985
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=5.5e-21 Score=158.23 Aligned_cols=244 Identities=14% Similarity=0.218 Sum_probs=184.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCC------cceeEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDD------RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV 139 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 139 (339)
..|.+.|..++|.|.. ..|++++ + .+.+|++... ..+++.+|.+|. ++|.|+++.+ +++.+
T Consensus 291 ~s~~d~ir~l~~~~se-----p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~-----gPVl~v~v~~-n~~~~ 359 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSE-----PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE-----GPVLCVVVPS-NGEHC 359 (577)
T ss_pred ecchhhhhhhhcCCCC-----CeEEEeccccchhhhhhcccCCccccceeeeEEEeccc-----CceEEEEecC-CceEE
Confidence 4688899999999998 7888888 4 9999999332 267889999999 9999999997 99999
Q ss_pred EEEeCCCeEEEEECCCC----------eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC
Q 040307 140 ATCSVDTTCVIWDIDRE----------ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV 208 (339)
Q Consensus 140 ~~~~~d~~v~i~d~~~~----------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 208 (339)
++|+.||+|+.|++... .....+.+|.+.|+.++++ ..+.|++++.||++++|+...... ..+..+.
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~ 437 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPK 437 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCcc
Confidence 99999999999966421 1334567999999999999 677899999999999999887765 2233322
Q ss_pred CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec-------CCCCeeEEEeccCCCCeEEEEeCCCcEE
Q 040307 209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-------HEGSVNGISWAPLYGRRLCSVADDSRAL 281 (339)
Q Consensus 209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 281 (339)
..+...++.+-......+++...-+. -.++++.. ...+..+.. ....+..+.++|.++ +.+++..|+.|+
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~-~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir 514 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGY-TSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIR 514 (577)
T ss_pred ccCCcceEeeccchhHhhhhhccccc-ccchhhhh-hhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCcee
Confidence 33455677775322233333333332 33444433 111222211 123578899999995 999999999999
Q ss_pred EEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 282 IWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
++|...+. .......|...++++++.|+|.+|++++.|+.+++|++
T Consensus 515 ~~dn~~~~------------~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 515 FFDNKTGK------------ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cccccccc------------cchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 99999988 23356678999999999999999999999999999974
No 179
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.87 E-value=1.8e-19 Score=139.65 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=179.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
...+|+|.+|++| +..+|++. ..+.|.||.....+ .....+++ ..|...|+++.|+|.. ..|++|+
T Consensus 9 ~~~pitchAwn~d---rt~iAv~~----~~~evhiy~~~~~~-~w~~~htl-s~Hd~~vtgvdWap~s-----nrIvtcs 74 (361)
T KOG1523|consen 9 LLEPITCHAWNSD---RTQIAVSP----NNHEVHIYSMLGAD-LWEPAHTL-SEHDKIVTGVDWAPKS-----NRIVTCS 74 (361)
T ss_pred ccCceeeeeecCC---CceEEecc----CCceEEEEEecCCC-Cceeceeh-hhhCcceeEEeecCCC-----CceeEcc
Confidence 4689999999999 99999999 68899998776554 12222244 6899999999999999 6778877
Q ss_pred -C-cEEEEee-cCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee----eeeccCCc
Q 040307 96 -D-SLRLWEI-HDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET----QLVAHDRE 168 (339)
Q Consensus 96 -~-~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----~~~~~~~~ 168 (339)
| .-++|.. +.+++++...+..+. .+++++.|+| .++.||+|+.-..|.||-.+..+.-. .-+.+.+.
T Consensus 75 ~drnayVw~~~~~~~WkptlvLlRiN-----rAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 75 HDRNAYVWTQPSGGTWKPTLVLLRIN-----RAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred CCCCccccccCCCCeeccceeEEEec-----cceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 5 9999999 666677777777766 8999999999 99999999999999999887655321 12346778
Q ss_pred eeEEEec-CCcEEEEEeCCCcEEEEECCCC-----cce----------eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 169 VYDISWG-GFNVFASVSGDCSVRVFDLRDK-----ERS----------TIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-----~~~----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
|++++|+ ++-+|++|+.|+.+++|..--. ..+ ..+.+.....+.+..+.|+| +|..|+-.+.|
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hd 227 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHD 227 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCC
Confidence 9999999 6778899999999999864211 100 01111112457899999998 99999999999
Q ss_pred CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
.. +.+-|...+.+.+..+....-+..++.|-.+. .++.++.|
T Consensus 228 s~-v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv~ag~~ 269 (361)
T KOG1523|consen 228 ST-VSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVVAAGYD 269 (361)
T ss_pred Cc-eEEeecCCCchhccchhhccCCceeeEeecCC--ceeecCCC
Confidence 99 99999877554445544444677777776653 34455544
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.9e-19 Score=159.34 Aligned_cols=295 Identities=15% Similarity=0.216 Sum_probs=200.9
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D- 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~- 96 (339)
+...+.|+|- ...++++. ....|+||||.....--.. .........|+.+.+-.+.+. .++.+|+ |
T Consensus 1066 ~pk~~~~hpf---~p~i~~ad----~r~~i~vwd~e~~~~l~~F--~n~~~~~t~Vs~l~liNe~D~---aLlLtas~dG 1133 (1387)
T KOG1517|consen 1066 PPKTLKFHPF---EPQIAAAD----DRERIRVWDWEKGRLLNGF--DNGAFPDTRVSDLELINEQDD---ALLLTASSDG 1133 (1387)
T ss_pred CCceeeecCC---CceeEEcC----CcceEEEEecccCceeccc--cCCCCCCCccceeeeecccch---hheeeeccCc
Confidence 5778899999 88888888 6889999998865432111 111234567889988665432 5666666 5
Q ss_pred cEEEEeecCC---cceeEEEeec---CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCce
Q 040307 97 SLRLWEIHDD---RTELKSLLNS---NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREV 169 (339)
Q Consensus 97 ~i~iw~~~~~---~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v 169 (339)
.|+||+--.. +.+.+....+ +..... +.=.-++|.. ...+|++++.-..|+|||......+..+. +....|
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r-~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~v 1211 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGAR-GTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLV 1211 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCC-CCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccc
Confidence 9999975332 2223333222 111111 1114567875 45556666668899999998877776664 334567
Q ss_pred eEEEec--CCcEEEEEeCCCcEEEEECCCCcc--eeeEEeCCCCCCC--eEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 170 YDISWG--GFNVFASVSGDCSVRVFDLRDKER--STIIYENPVQDCP--LLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 170 ~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
+++.-+ .++.+++|..||.|++||.|.... ....+.. |... |..+.+.+..-..|++|+.+|. |++||+|.
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~--h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~ 1288 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE--HNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRM 1288 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCCccccceeecc--cCCcccceeEEeecCCCcceeeeccCCe-EEEEeccc
Confidence 777766 579999999999999999998764 3333333 4444 9999998744446999999999 99999998
Q ss_pred C-CCceEEEecCC--C-CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307 244 P-TNPVVVLSKHE--G-SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS 319 (339)
Q Consensus 244 ~-~~~~~~~~~~~--~-~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 319 (339)
. .....+...|- + .++++..+++.+ .+|+|+. +.|+||++........ ...+...-...+.+.+++||
T Consensus 1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~------k~n~~F~~q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNII------KYNPGFMGQRIGSVSCLAFH 1360 (1387)
T ss_pred CcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccc------ccCcccccCcCCCcceeeec
Confidence 3 22223333333 3 599999999995 9999998 9999999988661000 00111222234567999999
Q ss_pred CCCCceEEEecCCeEEEEe
Q 040307 320 PLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 320 p~~~~l~~~~~d~~v~~w~ 338 (339)
|....+++++.|++|.||.
T Consensus 1361 P~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1361 PHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred chhHhhhhccCCceEEEee
Confidence 9988778888999999986
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=1.7e-19 Score=156.05 Aligned_cols=268 Identities=16% Similarity=0.200 Sum_probs=194.2
Q ss_pred CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccc-eeeEeecCCCCceEEEEcCCCCCC
Q 040307 8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA-DNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
......+..+.+|.+++|+|. ...+||.|. ++|.|.+||.......... .......|..+|..+.|..+..
T Consensus 233 ~~Pe~~~~~~s~v~~~~f~p~--~p~ll~gG~----y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~-- 304 (555)
T KOG1587|consen 233 NTPELVLESPSEVTCLKFCPF--DPNLLAGGC----YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH-- 304 (555)
T ss_pred CCceEEEecCCceeEEEeccC--CcceEEeec----cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC--
Confidence 345566777889999999998 467777788 8999999998866653221 1122357999999999988663
Q ss_pred CCCeEEEeCC-cEEEEeecCCcc----eeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---
Q 040307 87 NPDIVATSGD-SLRLWEIHDDRT----ELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI--- 157 (339)
Q Consensus 87 ~~~~la~~~~-~i~iw~~~~~~~----~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--- 157 (339)
+.+++.+++| .|..|+++.-.. .+..... .+........+++++|.|.+...++.|++.|.|..-+....+
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 1246666667 999998765431 0111111 011112236789999999889999999999999874432221
Q ss_pred -----eeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307 158 -----LETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG 230 (339)
Q Consensus 158 -----~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 230 (339)
....+..|.++|+.+.++| ...|++++ |-+++||.......+...+.. +...+++++|+|.....++++.
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEc
Confidence 1234456889999999994 45555555 999999998844434443433 4456999999998888999999
Q ss_pred eCCCeEEEEecCCC-CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 231 MDSNKVVVLDIRFP-TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 231 ~d~~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
.+|. +.+||+... ..|+.+...+....+.+.|++.| ++|+.|...|.+.+|++...
T Consensus 462 ~~G~-l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 462 GDGN-LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCCc-eehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCch
Confidence 9999 999998753 35666766666777889999998 69999999999999999653
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=1.8e-20 Score=157.54 Aligned_cols=244 Identities=20% Similarity=0.292 Sum_probs=182.8
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc--
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR-- 107 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~-- 107 (339)
..++|+-- .+..|.|-||+++..+...--... ..-....|+.+.|.|... ..||.++| .|++|.+..+.
T Consensus 591 ~~rvAVPL--~g~gG~iai~el~~PGrLPDgv~p-~l~Ngt~vtDl~WdPFD~----~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 591 NKRVAVPL--AGSGGVIAIYELNEPGRLPDGVMP-GLFNGTLVTDLHWDPFDD----ERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred cceEEEEe--cCCCceEEEEEcCCCCCCCccccc-ccccCceeeecccCCCCh----HHeeecccCceEEEEEeccCCCC
Confidence 55665522 114799999998866543322111 123456799999999875 77888875 99999997653
Q ss_pred ---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEE
Q 040307 108 ---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV 183 (339)
Q Consensus 108 ---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 183 (339)
..+...+..|. ..|+.+.|+|.-.+.|++++.|-+|++||+.+.+....+.+|.+.|.+++|+ +|..+++.
T Consensus 664 e~~~tPe~~lt~h~-----eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtV 738 (1012)
T KOG1445|consen 664 ENEMTPEKILTIHG-----EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATV 738 (1012)
T ss_pred cccCCcceeeeccc-----ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeee
Confidence 34566677777 8999999999888999999999999999999999889999999999999999 89999999
Q ss_pred eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC---eEEEEecCCCC-CceEEEecCCC-Ce
Q 040307 184 SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN---KVVVLDIRFPT-NPVVVLSKHEG-SV 258 (339)
Q Consensus 184 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~---~i~i~d~~~~~-~~~~~~~~~~~-~v 258 (339)
+.||+|++|+.++.+.+..-...+.. ..-..+.|.- +|+++++.+.|.. +|.+||..... .++.+..-... .+
T Consensus 739 cKDg~~rVy~Prs~e~pv~Eg~gpvg-tRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~ 816 (1012)
T KOG1445|consen 739 CKDGTLRVYEPRSREQPVYEGKGPVG-TRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP 816 (1012)
T ss_pred ecCceEEEeCCCCCCCccccCCCCcc-CcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcc
Confidence 99999999999998755543333222 3456788885 8999988887764 58899877643 34444332111 12
Q ss_pred eEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 259 NGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 259 ~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.--.+.+|...++++|-.|..|.+|.+-...
T Consensus 817 LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 817 LVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 2234556766788899999999999998876
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=6.8e-18 Score=142.30 Aligned_cols=264 Identities=13% Similarity=0.079 Sum_probs=169.8
Q ss_pred cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--C-cEEEEeecC-CcceeEEEeecCCC
Q 040307 44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--D-SLRLWEIHD-DRTELKSLLNSNKT 119 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--~-~i~iw~~~~-~~~~~~~~~~~~~~ 119 (339)
.++.|.+|+++.. +....... ..+.+.+..++++|++ ++|++++ + .|.+|+++. +.......... .
T Consensus 10 ~~~~I~~~~~~~~-g~l~~~~~--~~~~~~~~~l~~spd~-----~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~- 79 (330)
T PRK11028 10 ESQQIHVWNLNHE-GALTLLQV--VDVPGQVQPMVISPDK-----RHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P- 79 (330)
T ss_pred CCCCEEEEEECCC-CceeeeeE--EecCCCCccEEECCCC-----CEEEEEECCCCcEEEEEECCCCceEEeeeecC-C-
Confidence 5899999998643 33332112 3445678899999999 6665553 3 899999973 33222222221 1
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCe----eeeeeeccCCceeEEEec-CCcEEE-EEeCCCcEEEE
Q 040307 120 SEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREI----LETQLVAHDREVYDISWG-GFNVFA-SVSGDCSVRVF 192 (339)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~ 192 (339)
.....++++| ++++|++++. ++.|.+|++++.. .+..+. +.....+++++ ++++++ +...++.|.+|
T Consensus 80 ----~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 80 ----GSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred ----CCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 3456899998 8887777764 8899999996432 222222 22345778888 666665 45567999999
Q ss_pred ECCCCcceee----EEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCC-CC--ceEEEecC------CCCe
Q 040307 193 DLRDKERSTI----IYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFP-TN--PVVVLSKH------EGSV 258 (339)
Q Consensus 193 d~~~~~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~-~~--~~~~~~~~------~~~v 258 (339)
|+.+...... ....+ .......++|+| ++++++++.. ++. |.+||+... +. .+..+..+ ....
T Consensus 154 d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EECCCCcccccCCCceecC-CCCCCceEEECC-CCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 9986432211 11111 123467899998 8898888877 555 999999742 11 22223221 1123
Q ss_pred eEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeeecc---cceeEEEEecCCCCceEEEe-cCCe
Q 040307 259 NGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS---MAEINVVRWSPLELDWIAIA-FVNK 333 (339)
Q Consensus 259 ~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~l~~~~-~d~~ 333 (339)
..+.++|++ ++|+++. .++.|.+|++.... ......++ ......+.++|+|++|+++. .+++
T Consensus 231 ~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~------------~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 231 ADIHITPDG-RHLYACDRTASLISVFSVSEDG------------SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred eeEEECCCC-CEEEEecCCCCeEEEEEEeCCC------------CeEEEeEEEeccccCCceEECCCCCEEEEEEccCCc
Confidence 468999999 5777765 57899999997654 11212221 23456899999999988766 5899
Q ss_pred EEEEeC
Q 040307 334 LQLLKV 339 (339)
Q Consensus 334 v~~w~v 339 (339)
|.+|++
T Consensus 298 v~v~~~ 303 (330)
T PRK11028 298 ISVYEI 303 (330)
T ss_pred EEEEEE
Confidence 999974
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=6e-20 Score=138.55 Aligned_cols=250 Identities=17% Similarity=0.222 Sum_probs=180.7
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.+...|+++.|-.+ +. |..|. ..|.|++|.++.+...... ...+...|+.+.--|++ .++.-|
T Consensus 12 p~~~~v~s~~fqa~---~r-L~sg~----~~G~V~~w~lqt~r~~~~~----r~~g~~~it~lq~~p~d-----~l~tqg 74 (323)
T KOG0322|consen 12 PHSSSVTSVLFQAN---ER-LMSGL----SVGIVKMWVLQTERDLPLI----RLFGRLFITNLQSIPND-----SLDTQG 74 (323)
T ss_pred cccchheehhhccc---hh-hhccc----ccceEEEEEeecCccchhh----hhhccceeeceeecCCc-----chhhcC
Confidence 56788999998877 54 88888 7999999998876655544 34677889999988887 565556
Q ss_pred CC-cEEEEeecCCcceeEEEeec-------------------------------C---------------CCccCCCCEE
Q 040307 95 GD-SLRLWEIHDDRTELKSLLNS-------------------------------N---------------KTSEFSSAIT 127 (339)
Q Consensus 95 ~~-~i~iw~~~~~~~~~~~~~~~-------------------------------~---------------~~~~~~~~i~ 127 (339)
-| .+.+|++....+..+..+.. | +.....+.++
T Consensus 75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 56 88888877532111111000 0 0112234566
Q ss_pred EEEEcCCCC--CEEEEEeCCCeEEEEECCCCe----------eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEEC
Q 040307 128 SFDWAGFDT--RRVATCSVDTTCVIWDIDREI----------LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDL 194 (339)
Q Consensus 128 ~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~----------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~ 194 (339)
+..|.-..+ -++++|.++|.+-+||+.++. ....+..|..+|.++.|. --+.=++++.+..+..|.+
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSL 234 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeee
Confidence 666532222 357788899999999999873 333445688999999998 3444567788888889888
Q ss_pred CCCc-ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEE
Q 040307 195 RDKE-RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCS 273 (339)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 273 (339)
.... ....-.+.......+..+..-| +++++|+++-|++ |+||..++ ..|+..+..|.+.|++++|+|+. .++|+
T Consensus 235 ~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~R-iRVyswrt-l~pLAVLkyHsagvn~vAfspd~-~lmAa 310 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHR-IRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDC-ELMAA 310 (323)
T ss_pred ccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCc-EEEEEecc-CCchhhhhhhhcceeEEEeCCCC-chhhh
Confidence 6542 1111111111234677888888 9999999999999 99999998 77899999999999999999997 49999
Q ss_pred EeCCCcEEEEEe
Q 040307 274 VADDSRALIWEV 285 (339)
Q Consensus 274 ~~~dg~v~iwd~ 285 (339)
++.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3e-19 Score=143.24 Aligned_cols=195 Identities=17% Similarity=0.165 Sum_probs=149.6
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEe
Q 040307 127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYE 205 (339)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 205 (339)
..++|++ ++..+++++.||++++|+..+...+.....|...|.++.|+ ++..|++.+.| ..++|+.+++........
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 5789996 99999999999999999987777777777899999999999 89999999999 899999999854333221
Q ss_pred CCCCCCCeEEEEEecCCC---C-eEEEEeeCCCeEEEEecCCCCC----ceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 206 NPVQDCPLLRLEWNKADP---R-FMATVGMDSNKVVVLDIRFPTN----PVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 206 ~~~~~~~v~~~~~~p~~~---~-~l~~~~~d~~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
...+.....+.|+. ++ . ++++.-..+..|+.||+..... +..+.......|.+++.+++| ++++.|+.|
T Consensus 226 -~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT~d 302 (398)
T KOG0771|consen 226 -FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALGTMD 302 (398)
T ss_pred -cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEeccC
Confidence 22345567788875 43 2 3333333333377776654222 223333334589999999999 699999999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCcccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 278 SRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 278 g~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|.|.|++....+ .. ....|...|+.+.|+|+.+++...+.|...+|..|
T Consensus 303 GsVai~~~~~lq-------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQ-------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceee-------------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999999877 33 33468889999999999999999999988877653
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.6e-20 Score=155.50 Aligned_cols=251 Identities=14% Similarity=0.146 Sum_probs=184.4
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCC----CCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNP----ETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~----~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
.|.+.|++++|.|. ...|++++ .+|.|.+|+++. ....+.....+ .+|.++|.|++..+++ ..
T Consensus 292 s~~d~ir~l~~~~s---ep~lit~s----ed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~-----~~ 358 (577)
T KOG0642|consen 292 SHDDCIRALAFHPS---EPVLITAS----EDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNG-----EH 358 (577)
T ss_pred cchhhhhhhhcCCC---CCeEEEec----cccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCc-----eE
Confidence 35689999999999 88999999 899999999832 12233332344 5899999999999999 78
Q ss_pred EEEeC-C-cEEEEeecCCc--------ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 040307 91 VATSG-D-SLRLWEIHDDR--------TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET 160 (339)
Q Consensus 91 la~~~-~-~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 160 (339)
+.+|+ | +|+.|++.... ......+.||. ..|+.+++|+ ....|++++.||++++|+.....+ .
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght-----davw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT-----DAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccc-----cceeeeeecc-cccceeeecCCceEEeeccCCcCc-c
Confidence 88888 6 99999765321 13455677887 9999999997 888899999999999999866554 3
Q ss_pred eeec--cCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEe----CCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 161 QLVA--HDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYE----NPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 161 ~~~~--~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
++.. ..+...++.+-. ..+.++...-+.-.+++.........+.. .+.....+..+.++| +..+.+++..+
T Consensus 432 ~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed 510 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHED 510 (577)
T ss_pred ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccC
Confidence 3321 122334566552 22233322333333444433332222111 111224577889998 77899999999
Q ss_pred CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+. |+++|... +.++.....|...++++++.|+|. +|++++.|+.+++|.+....
T Consensus 511 ~~-Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 511 RS-IRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred Cc-eecccccc-cccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchh
Confidence 99 99999988 788999999999999999999995 99999999999999987755
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=2.9e-19 Score=138.47 Aligned_cols=234 Identities=20% Similarity=0.276 Sum_probs=178.6
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT 146 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 146 (339)
...+|+|.+|++|. ..+|.+-. .|.||.....+ ++...++..|. ..|++++|+| ..+.|++++.|.
T Consensus 9 ~~~pitchAwn~dr-----t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd-----~~vtgvdWap-~snrIvtcs~dr 77 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-----TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD-----KIVTGVDWAP-KSNRIVTCSHDR 77 (361)
T ss_pred ccCceeeeeecCCC-----ceEEeccCCceEEEEEecCCCCceeceehhhhC-----cceeEEeecC-CCCceeEccCCC
Confidence 45789999999999 78888764 99999998887 78888888888 9999999998 889999999999
Q ss_pred eEEEEECCC-Ce--eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcce---eeEEeCCCCCCCeEEEEEe
Q 040307 147 TCVIWDIDR-EI--LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERS---TIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 147 ~v~i~d~~~-~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~v~~~~~~ 219 (339)
.-++|.... ++ +...+..++..++++.|+ ..+.|++|+....|.+|-++....- ..+... ....|.++.|+
T Consensus 78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP--irStv~sldWh 155 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKP--IRSTVTSLDWH 155 (361)
T ss_pred CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCc--cccceeeeecc
Confidence 999999844 33 445556788999999999 6999999999999999988765421 222222 45789999999
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCC-----------------CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFP-----------------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALI 282 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~-----------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~i 282 (339)
| ++-+|++|+.|+. .++|..--. ++.+.++....+.|..+.|+|+| ..|+-.+.|..+.+
T Consensus 156 p-nnVLlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 156 P-NNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSF 232 (361)
T ss_pred C-CcceecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEE
Confidence 9 8899999999998 998864210 01223333456789999999999 59999999999999
Q ss_pred EEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307 283 WEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
-|...... .+.......-+..++.|-.... +++++.|
T Consensus 233 ~da~~p~~-----------~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 233 VDAAGPSE-----------RVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred eecCCCch-----------hccchhhccCCceeeEeecCCc-eeecCCC
Confidence 98887651 1122222225566666655442 4555544
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.4e-18 Score=147.62 Aligned_cols=292 Identities=13% Similarity=0.180 Sum_probs=202.4
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-c
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-S 97 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~ 97 (339)
..++.+++. +.+.+... +..+.+|.....+ ...........|...+++.++||.+ +++|++. + .
T Consensus 163 ~~~I~~~~~---ge~~~i~~-----~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~-----~~~Aa~d~dGr 228 (792)
T KOG1963|consen 163 PKSIVDNNS---GEFKGIVH-----MCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNE-----RYLAAGDSDGR 228 (792)
T ss_pred CccEEEcCC---ceEEEEEE-----eeeEEEEEecccc-eeeccchhhhhhcccceeEEecccc-----ceEEEeccCCc
Confidence 467888888 88888877 7888998777655 3333223345688789999999999 8999987 4 9
Q ss_pred EEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 98 LRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 98 i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
|.+|.--. +.......+.-|. ..|++++|++ +|.+|++|+..|.+-+|.+.+++ .+-+..-.++|..+.++
T Consensus 229 I~vw~d~~~~~~~~t~t~lHWH~-----~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 229 ILVWRDFGSSDDSETCTLLHWHH-----DEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS 301 (792)
T ss_pred EEEEeccccccccccceEEEecc-----cccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence 99997544 3333455666676 8999999997 99999999999999999999988 44556678899999999
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCcceeeEEeC--------CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYEN--------PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
++++.+....|..|.+....+......+... ....+-.+.++++| ..+.++..+..+. |.+||+.+..
T Consensus 302 ~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~-vQ~ydl~td~- 378 (792)
T KOG1963|consen 302 PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH-VQFYDLYTDS- 378 (792)
T ss_pred CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce-EEEEeccccc-
Confidence 7889999999999999887655422222111 01223455667776 5555555666666 7777765422
Q ss_pred ceEE--------------------------------------------------------------------EecCCCCe
Q 040307 247 PVVV--------------------------------------------------------------------LSKHEGSV 258 (339)
Q Consensus 247 ~~~~--------------------------------------------------------------------~~~~~~~v 258 (339)
.+.. ...|...+
T Consensus 379 ~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~ 458 (792)
T KOG1963|consen 379 TIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF 458 (792)
T ss_pred eeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee
Confidence 0000 01244433
Q ss_pred eEEEe-ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307 259 NGISW-APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 259 ~~~~~-~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
...++ +|.....+++++.||.++||-+...+. ............+.. -|..++++++|+.||. +++++.|++|.+|
T Consensus 459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n-~~k~~s~W~c~~i~s-y~k~~i~a~~fs~dGs-lla~s~~~~Itiw 535 (792)
T KOG1963|consen 459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN-IYKKSSNWTCKAIGS-YHKTPITALCFSQDGS-LLAVSFDDTITIW 535 (792)
T ss_pred EEEEEecCcccceeEEeccCCeEEEEEEecccc-cCcCccceEEeeeec-cccCcccchhhcCCCc-EEEEecCCEEEEe
Confidence 33333 343323788999999999999966551 000000111111122 3788999999999995 9999999999999
Q ss_pred e
Q 040307 338 K 338 (339)
Q Consensus 338 ~ 338 (339)
+
T Consensus 536 d 536 (792)
T KOG1963|consen 536 D 536 (792)
T ss_pred c
Confidence 7
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=1.9e-20 Score=161.78 Aligned_cols=238 Identities=18% Similarity=0.263 Sum_probs=181.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|-.+|+|+.|...+ .++++|+| .++||..++.. +.....+|. +.|+.++.+. ++.++++++.|
T Consensus 187 lgH~naVyca~fDrtg-----~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs-----~ditdlavs~-~n~~iaaaS~D 253 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTG-----RYIITGSDDRLVKIWSMETAR--CLASCRGHS-----GDITDLAVSS-NNTMIAAASND 253 (1113)
T ss_pred Hhhhhheeeeeecccc-----ceEeecCccceeeeeeccchh--hhccCCCCc-----cccchhccch-hhhhhhhcccC
Confidence 5899999999999999 99999996 99999988887 899999998 9999999996 88899999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECC-CCccee--------------eEEeC----
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLR-DKERST--------------IIYEN---- 206 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--------------~~~~~---- 206 (339)
..|++|.+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+ ...... .+++.
T Consensus 254 ~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~ 330 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR 330 (1113)
T ss_pred ceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence 999999999999999999999999999999643 77889999999998 211000 00000
Q ss_pred --------CCCCCCeEEEEEecCCCCeEE-----------EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCC
Q 040307 207 --------PVQDCPLLRLEWNKADPRFMA-----------TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY 267 (339)
Q Consensus 207 --------~~~~~~v~~~~~~p~~~~~l~-----------~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~ 267 (339)
.......-.++|.. ..-.++ ++-.+-. +++|++.. +...+.+.+|...+..+.++|-+
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred cccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeE-eeeeeccc-chhhhhhcccccceeeeeecCCC
Confidence 00001111222321 222222 2223333 77888876 66678888999999999999999
Q ss_pred CCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307 268 GRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 268 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
+....+++.||...|||+-.+. |+..+ .....+..-.||++|..++..-.-|.+.|.
T Consensus 408 ~ri~msag~dgst~iwdi~eg~-------------pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGI-------------PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cHhhhhccCCCceEeeecccCC-------------cceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 8778899999999999999887 44322 235567788999999866655566666664
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.8e-18 Score=125.61 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=165.9
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE---eecC-----CCCceEEEEcCC
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL---IFDH-----PYTPTNIAFFPS 82 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~---~~~~-----~~~v~~l~~~~~ 82 (339)
+....|..+|+.++|..+ +|++|+ ||.|+=|.|+.........+.. ...| -..|+++...|.
T Consensus 56 v~eqahdgpiy~~~f~d~-----~Lls~g-----dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~ 125 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFHDD-----FLLSGG-----DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS 125 (325)
T ss_pred eeccccCCCeeeeeeehh-----heeecc-----CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence 333568999999999966 788888 8999999998654421110000 0112 235899999987
Q ss_pred CCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 83 EETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 83 ~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
.. .+|.+|+| .++-||+++++ ...++++|+ ..|.++.-.. ....+++|++||++++||.++++.+..
T Consensus 126 en----Si~~AgGD~~~y~~dlE~G~--i~r~~rGHt-----DYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 126 EN----SILFAGGDGVIYQVDLEDGR--IQREYRGHT-----DYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred CC----cEEEecCCeEEEEEEecCCE--EEEEEcCCc-----ceeeeeeecc-cCcceeecCCCccEEEEeccccceeEE
Confidence 74 67777777 99999999998 788999999 8888888753 567899999999999999999998877
Q ss_pred eecc----------CCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307 162 LVAH----------DREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231 (339)
Q Consensus 162 ~~~~----------~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 231 (339)
+... ...|-+++.+ .+++++|+ ...+.+|.++..+....+.- ..++..+.|. .+.+++++.
T Consensus 194 ie~yk~~~~lRp~~g~wigala~~-edWlvCGg-Gp~lslwhLrsse~t~vfpi----pa~v~~v~F~---~d~vl~~G~ 264 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGG-GPKLSLWHLRSSESTCVFPI----PARVHLVDFV---DDCVLIGGE 264 (325)
T ss_pred eccccChhhcCcccCceeEEEecc-CceEEecC-CCceeEEeccCCCceEEEec----ccceeEeeee---cceEEEecc
Confidence 6422 1234455444 66777765 45799999999886555433 3678888884 356666676
Q ss_pred CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307 232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw 283 (339)
.+. +.-|.+.. .............++..|+-.--++|..++....+.|+
T Consensus 265 g~~-v~~~~l~G--vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 265 GNH-VQSYTLNG--VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccc-eeeeeecc--EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 666 88887753 33333333334455555543322466666666667665
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=1.1e-16 Score=126.59 Aligned_cols=284 Identities=15% Similarity=0.196 Sum_probs=192.8
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-- 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-- 95 (339)
..+..+.|+.+ ...|..|+ ....++|+.+.-+.-... ......|--+-|+. .++|..+
T Consensus 6 ~ti~~~~~Nqd---~~~lsvGs-----~~Gyk~~~~~~~~k~~~~-----~~~~~~IvEmLFSS-------SLvaiV~~~ 65 (391)
T KOG2110|consen 6 PTINFIGFNQD---STLLSVGS-----KDGYKIFSCSPFEKCFSK-----DTEGVSIVEMLFSS-------SLVAIVSIK 65 (391)
T ss_pred cceeeeeeccc---eeEEEccC-----CCceeEEecCchHHhhcc-----cCCCeEEEEeeccc-------ceeEEEecC
Confidence 34566669999 99999999 455678666554331111 22233455666765 4555544
Q ss_pred C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec---cCCcee
Q 040307 96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA---HDREVY 170 (339)
Q Consensus 96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~v~ 170 (339)
+ .+++++++.....+...+. .+|.++.++. +.|+++=++ .|+|||+++.+.+.++.. +...+.
T Consensus 66 qpr~Lkv~~~Kk~~~ICe~~fp--------t~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTTICEIFFP--------TSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred CCceEEEEEcccCceEEEEecC--------CceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence 3 7999999887633333333 5899999863 556665554 499999999998887743 444566
Q ss_pred EEEec-CCcEEEEEe--CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307 171 DISWG-GFNVFASVS--GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~ 247 (339)
.++.+ .+.+++--+ ..|.|.+||+.+.+....+. . |++.+.+++|+| +|.+||+++..|+.|+||.+.. ++.
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-a--H~~~lAalafs~-~G~llATASeKGTVIRVf~v~~-G~k 208 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-A--HKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPE-GQK 208 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-e--cCCceeEEEECC-CCCEEEEeccCceEEEEEEcCC-ccE
Confidence 66666 455776433 35899999999887555443 3 899999999998 9999999999999999999987 566
Q ss_pred eEEEecCC--CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC-cc-----------cce---------
Q 040307 248 VVVLSKHE--GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG-DV-----------EPE--------- 304 (339)
Q Consensus 248 ~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~-----------~~~--------- 304 (339)
+.+++... ..|.+++|+|++ .+|++.+..++|.||.++.....+.++.+.. .. -|.
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~ 287 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQS 287 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhc
Confidence 77776433 368899999999 5999999999999999987653222211110 00 000
Q ss_pred eee-----cccc--eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 LCY-----QSMA--EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 ~~~-----~~~~--~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..+ ...+ .+..+.-.+..+.+..++.||.+..|++
T Consensus 288 R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 288 RKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred cceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 000 0111 2334443456777889999999998875
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.3e-16 Score=137.60 Aligned_cols=280 Identities=20% Similarity=0.325 Sum_probs=206.1
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeecccc-CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDY-SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IV 91 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l 91 (339)
..|...|.+++|+|+ +..++.++ . ++.+++|+.... .... .+ ..|...|.+++|+|++ . ++
T Consensus 152 ~~~~~~v~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~--~~~~--~~-~~~~~~v~~~~~~~~~-----~~~~ 214 (466)
T COG2319 152 EGHSESVTSLAFSPD---GKLLASGS----SLDGTIKLWDLRTG--KPLS--TL-AGHTDPVSSLAFSPDG-----GLLI 214 (466)
T ss_pred ecCcccEEEEEECCC---CCEEEecC----CCCCceEEEEcCCC--ceEE--ee-ccCCCceEEEEEcCCc-----ceEE
Confidence 346678999999999 88888887 4 999999877652 2221 22 4589999999999988 6 55
Q ss_pred EEeC-C-cEEEEeecCCcceeEE-EeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeeeccCC
Q 040307 92 ATSG-D-SLRLWEIHDDRTELKS-LLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQLVAHDR 167 (339)
Q Consensus 92 a~~~-~-~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~ 167 (339)
++++ + .+++|+...+. ... .+..|. ... ...|+| ++..+++++.|+.+++|++..... ...+..|..
T Consensus 215 ~~~~~d~~i~~wd~~~~~--~~~~~~~~~~-----~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGK--LLRSTLSGHS-----DSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285 (466)
T ss_pred EEecCCCcEEEEECCCCc--EEeeecCCCC-----cce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence 5534 5 89999877554 444 566665 443 237987 778899999999999999986664 444467888
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE-eeCCCeEEEEecCCCC
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV-GMDSNKVVVLDIRFPT 245 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~d~~~i~i~d~~~~~ 245 (339)
.+.++.|+ ++..+++++.|+.+.+||........... ...+...+..+.| +.++..++.+ ..++. +.+|++....
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~-~~~~~~~~~~ 362 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF-SPDGSLLVSGGSDDGT-IRLWDLRTGK 362 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE-CCCCCEEEEeecCCCc-EEeeecCCCc
Confidence 99999999 47788889999889999988877555444 1224557899999 5343555555 56766 8899998744
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEE-EeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc-ceeEEEEecCCCC
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCS-VADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM-AEINVVRWSPLEL 323 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~~ 323 (339)
....... ...+..+.+.+ . ..+.. +..++.+.+|+..... ........ ..+....+++++.
T Consensus 363 -~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
T COG2319 363 -PLKTLEG-HSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGS-------------LLRNLDGHTSRVTSLDFSPDGK 425 (466)
T ss_pred -eeEEecC-CceEEEEEECC-C-CCEEEEecCCCceEEEecccCe-------------eeeeccCCCCcEEEEEECCCCc
Confidence 2233322 22288999999 6 45555 8899999999999987 22222222 7899999999998
Q ss_pred ceEEEecCCeEEEEeC
Q 040307 324 DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 324 ~l~~~~~d~~v~~w~v 339 (339)
.++.++.++.+++|++
T Consensus 426 ~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 426 SLASGSSDNTIRLWDL 441 (466)
T ss_pred EEEEecCCCcEEEEec
Confidence 7888889999999974
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=8.2e-17 Score=135.72 Aligned_cols=256 Identities=12% Similarity=0.105 Sum_probs=164.8
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
+.+..+.....+..++++|+ +++|++++. .++.|.+|+++ +.+.+..... ....+.+..++|+|++
T Consensus 26 ~~~~~~~~~~~~~~l~~spd---~~~lyv~~~---~~~~i~~~~~~-~~g~l~~~~~--~~~~~~p~~i~~~~~g----- 91 (330)
T PRK11028 26 TLLQVVDVPGQVQPMVISPD---KRHLYVGVR---PEFRVLSYRIA-DDGALTFAAE--SPLPGSPTHISTDHQG----- 91 (330)
T ss_pred eeeeEEecCCCCccEEECCC---CCEEEEEEC---CCCcEEEEEEC-CCCceEEeee--ecCCCCceEEEECCCC-----
Confidence 34555556677889999999 999888763 57899999887 3333332111 2334467899999999
Q ss_pred CeEEEeC--C-cEEEEeecCCc-c-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE-eCCCeEEEEECCCCeeeee-
Q 040307 89 DIVATSG--D-SLRLWEIHDDR-T-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC-SVDTTCVIWDIDREILETQ- 161 (339)
Q Consensus 89 ~~la~~~--~-~i~iw~~~~~~-~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~- 161 (339)
++|++++ + .|.+|++++.. . .....+.+. ....+++++| ++++++++ ..++.|.+||+++...+..
T Consensus 92 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 92 RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL------EGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC------CcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 6666654 3 99999997532 1 122222222 3456788998 88777554 4569999999976332211
Q ss_pred ----ee-ccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCC--cc--eeeEEeCCC---CCCCeEEEEEecCCCCeEE
Q 040307 162 ----LV-AHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDK--ER--STIIYENPV---QDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 162 ----~~-~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~--~~--~~~~~~~~~---~~~~v~~~~~~p~~~~~l~ 227 (339)
.. ........+.|+ ++++++++.. ++.|.+||+... +. ...+...+. +......+.++| ++++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~ly 243 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLY 243 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEE
Confidence 11 122346789999 6788877765 899999999742 21 111111111 112334688998 889888
Q ss_pred EEeeCCCeEEEEecCCCCCceEEEecC---CCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCC
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVLSKH---EGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGP 288 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~ 288 (339)
++......|.+|++......+ ++..+ ......++++|+|+ +|+++. .+++|.+|+++..
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~-~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGK-YLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCC-EEEEEEccCCcEEEEEEcCC
Confidence 886543349999997543222 22222 22456899999995 666555 5899999998754
No 194
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=2.6e-16 Score=122.18 Aligned_cols=280 Identities=14% Similarity=0.154 Sum_probs=187.0
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC--CceEEEEcCCCCCCCCCeEEE-eC
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY--TPTNIAFFPSEETLNPDIVAT-SG 95 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~~~~~la~-~~ 95 (339)
...+++|+.| ...+++|. +...+||+.++-...... ..+.+ .+..+-|-. ++||- ||
T Consensus 7 ~~lsvs~NQD---~ScFava~-----~~Gfriyn~~P~ke~~~r-----~~~~~G~~~veMLfR~-------N~laLVGG 66 (346)
T KOG2111|consen 7 KTLSVSFNQD---HSCFAVAT-----DTGFRIYNCDPFKESASR-----QFIDGGFKIVEMLFRS-------NYLALVGG 66 (346)
T ss_pred ceeEEEEccC---CceEEEEe-----cCceEEEecCchhhhhhh-----ccccCchhhhhHhhhh-------ceEEEecC
Confidence 4556999999 89999999 888999998874443333 11222 223333332 34433 33
Q ss_pred -C-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-CCeeeeeeecc-
Q 040307 96 -D-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-REILETQLVAH- 165 (339)
Q Consensus 96 -~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~- 165 (339)
+ .|.|||-.... ++.++.-. .+|.++.+.+ ..|++.- .+.|+||... ..+.+..+...
T Consensus 67 g~~pky~pNkviIWDD~k~~--~i~el~f~------~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~ 134 (346)
T KOG2111|consen 67 GSRPKYPPNKVIIWDDLKER--CIIELSFN------SEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRS 134 (346)
T ss_pred CCCCCCCCceEEEEecccCc--EEEEEEec------cceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeeccc
Confidence 1 79999944333 66666543 6899999974 4555544 5899999987 44555555322
Q ss_pred -CCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcc-eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 166 -DREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKER-STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 166 -~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
...+.+++-. ...+|+.-+ .-|.|+|-|+...+. ...+... |+..|.+++.+- +|..+|+++..|+-|+|||.
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A--H~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA--HDSDIACVALNL-QGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc--ccCceeEEEEcC-CccEEEEeccCcEEEEEEEc
Confidence 2335455444 455555444 458999999998775 3344444 889999999995 99999999999999999999
Q ss_pred CCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC--CCCCCCc-ccce---------eee
Q 040307 242 RFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG--NGGPSGD-VEPE---------LCY 307 (339)
Q Consensus 242 ~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~-~~~~---------~~~ 307 (339)
.. +.++.+++.. ...|++++|||+. .+||++|..|++.||.++....... ...+... +-|. ...
T Consensus 212 ~~-g~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~ 289 (346)
T KOG2111|consen 212 ED-GTLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQ 289 (346)
T ss_pred CC-CcEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEE
Confidence 98 6667777642 3479999999999 6999999999999999988552111 1111000 1111 011
Q ss_pred cccceeEEEEecCCCCceEEEecCCeEE
Q 040307 308 QSMAEINVVRWSPLELDWIAIAFVNKLQ 335 (339)
Q Consensus 308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~ 335 (339)
-..+...-++|-.+...+++.+.||.-+
T Consensus 290 l~~~~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 290 LPQGTQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred ccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence 1244566677877755688888887654
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=5.2e-19 Score=149.71 Aligned_cols=242 Identities=14% Similarity=0.196 Sum_probs=187.3
Q ss_pred ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
..+.++. |.+.|+|++|+.+ |+++|+|+ .|..|.+|+-..+ . .+...|.+.|.|+.|+|-.
T Consensus 44 ~llqtLKgHKDtVycVAys~d---GkrFASG~----aDK~VI~W~~klE--G-----~LkYSH~D~IQCMsFNP~~---- 105 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKD---GKRFASGS----ADKSVIIWTSKLE--G-----ILKYSHNDAIQCMSFNPIT---- 105 (1081)
T ss_pred ccccccccccceEEEEEEccC---CceeccCC----CceeEEEeccccc--c-----eeeeccCCeeeEeecCchH----
Confidence 3444443 7899999999999 99999999 7999999653332 2 2347999999999999999
Q ss_pred CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee---
Q 040307 88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--- 163 (339)
Q Consensus 88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--- 163 (339)
..|++++= ..-+|..+... +...+. ...|.+.+|.. ||++++.|-.+|+|.+-+- +++....+.
T Consensus 106 -h~LasCsLsdFglWS~~qK~---V~K~ks------s~R~~~CsWtn-DGqylalG~~nGTIsiRNk-~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 106 -HQLASCSLSDFGLWSPEQKS---VSKHKS------SSRIICCSWTN-DGQYLALGMFNGTISIRNK-NGEEKVKIERPG 173 (1081)
T ss_pred -HHhhhcchhhccccChhhhh---HHhhhh------heeEEEeeecC-CCcEEEEeccCceEEeecC-CCCcceEEeCCC
Confidence 89999984 88999987653 111111 16788999995 9999999999999999875 344333332
Q ss_pred ccCCceeEEEecC------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307 164 AHDREVYDISWGG------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV 237 (339)
Q Consensus 164 ~~~~~v~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~ 237 (339)
+..++|++++|+| .+.+++.....++.+|.+.....-. ...-.-...++.+.| +|.+++.|+.|+. ++
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk----~r~L~FdP~CisYf~-NGEy~LiGGsdk~-L~ 247 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK----DRALNFDPCCISYFT-NGEYILLGGSDKQ-LS 247 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc----cccCCCCchhheecc-CCcEEEEccCCCc-eE
Confidence 4678999999993 4678888888899998887653211 111123567899998 9999999999999 99
Q ss_pred EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+|--. +-.+.++.....+|+.++..|++ +.++.|+.||+|..|++-...
T Consensus 248 ~fTR~--GvrLGTvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 248 LFTRD--GVRLGTVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEeec--CeEEeeccccceeEEEEEEccCC-ceEEEEEccCeeehhhhHHhH
Confidence 99643 45566676677899999999999 699999999999999976543
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.4e-17 Score=129.85 Aligned_cols=269 Identities=14% Similarity=0.183 Sum_probs=182.5
Q ss_pred EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--C-cE
Q 040307 22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG--D-SL 98 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~--~-~i 98 (339)
-++|||+ |+++|+.. +-.+.| -+.++.++.+ .+..-+.|..+.|..+. .++.++. + .|
T Consensus 13 ~c~fSp~---g~yiAs~~-----~yrlvi--Rd~~tlq~~q----lf~cldki~yieW~ads-----~~ilC~~yk~~~v 73 (447)
T KOG4497|consen 13 FCSFSPC---GNYIASLS-----RYRLVI--RDSETLQLHQ----LFLCLDKIVYIEWKADS-----CHILCVAYKDPKV 73 (447)
T ss_pred ceeECCC---CCeeeeee-----eeEEEE--eccchhhHHH----HHHHHHHhhheeeeccc-----eeeeeeeeccceE
Confidence 4689999 99999999 557777 6666555544 23335678899999888 5555544 4 99
Q ss_pred EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307 99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDT-RRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-G 176 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~ 176 (339)
.+|++...+ -...+.... ..+..++|+| ++ ..|.+..-+-.|.+|.+.+.+.... +-.+..+..++|+ +
T Consensus 74 qvwsl~Qpe--w~ckIdeg~-----agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 74 QVWSLVQPE--WYCKIDEGQ-----AGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPD 144 (447)
T ss_pred EEEEeecce--eEEEeccCC-----CcceeeeECC-CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCC
Confidence 999999887 444555544 7899999999 77 5566666789999999988764332 2223345777888 6
Q ss_pred CcEEEEEeC------------------------------------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307 177 FNVFASVSG------------------------------------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK 220 (339)
Q Consensus 177 ~~~l~~~~~------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p 220 (339)
+++.+.+++ +..+.+||.--.-... .++ ....+..++|+|
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-aYe---~~lG~k~v~wsP 220 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-AYE---RGLGLKFVEWSP 220 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-eee---eccceeEEEecc
Confidence 666655543 1223344432211111 121 135688999999
Q ss_pred CCCCeEEEEeeCCCeEEEEecCCCC-------------------------------------------------------
Q 040307 221 ADPRFMATVGMDSNKVVVLDIRFPT------------------------------------------------------- 245 (339)
Q Consensus 221 ~~~~~l~~~~~d~~~i~i~d~~~~~------------------------------------------------------- 245 (339)
.+++|++|+.|+. +++.+--+-.
T Consensus 221 -~~qflavGsyD~~-lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~ 298 (447)
T KOG4497|consen 221 -CNQFLAVGSYDQM-LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQ 298 (447)
T ss_pred -ccceEEeeccchh-hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhh
Confidence 8999999999988 7775432100
Q ss_pred ----------CceEEEecCCCCeeEEEeccCCCCeEEEEeCC--CcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307 246 ----------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD--SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI 313 (339)
Q Consensus 246 ----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 313 (339)
+|...+....-.+..++|++|. .+++|-... +.+.+||++..+ .........+|
T Consensus 299 ~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~-------------l~avLiQk~pi 364 (447)
T KOG4497|consen 299 QMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLK-------------LHAVLIQKHPI 364 (447)
T ss_pred hhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhh-------------hhhhhhhccce
Confidence 0000111122356779999998 687776543 679999999987 44444456689
Q ss_pred EEEEecCCCCceEEEecCCeEEEEe
Q 040307 314 NVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 314 ~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
....|+|..+.|+.......+.+|.
T Consensus 365 raf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 365 RAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred eEEEeCCCCceEEEEcCCceEEEEc
Confidence 9999999999988877777788884
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=4.9e-17 Score=126.18 Aligned_cols=235 Identities=12% Similarity=0.154 Sum_probs=161.7
Q ss_pred ceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE-EeCC------
Q 040307 74 PTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT-CSVD------ 145 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d------ 145 (339)
..+++|+.|. ..++++.+ -.+||+++.-+......+... + -.+..|-|- .++|+- |+.+
T Consensus 8 ~lsvs~NQD~-----ScFava~~~Gfriyn~~P~ke~~~r~~~~~---G--~~~veMLfR---~N~laLVGGg~~pky~p 74 (346)
T KOG2111|consen 8 TLSVSFNQDH-----SCFAVATDTGFRIYNCDPFKESASRQFIDG---G--FKIVEMLFR---SNYLALVGGGSRPKYPP 74 (346)
T ss_pred eeEEEEccCC-----ceEEEEecCceEEEecCchhhhhhhccccC---c--hhhhhHhhh---hceEEEecCCCCCCCCC
Confidence 4459999999 79999988 999999876331111111111 1 223334443 344443 3332
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF 225 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 225 (339)
..|.|||-...+++.++. ...+|.++.+... .|++. ..+.|++|.....-..............+.+++-+ .+..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~-riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~-~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD-RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT-SNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC-eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCC-CCceE
Confidence 479999976777787775 6789999999844 44444 36789999998543333323321212334444433 24556
Q ss_pred EEEEeeCCCeEEEEecCCCCC-ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc-EEEEEecCCCCCCCCCCCCCcccc
Q 040307 226 MATVGMDSNKVVVLDIRFPTN-PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR-ALIWEVVGPGYRSGNGGPSGDVEP 303 (339)
Q Consensus 226 l~~~~~d~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~ 303 (339)
||.-+..-++|+|-|+..... +-..+.+|...|.+++.+-+| .++||+|..|+ |||||..+++ +
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~-------------~ 216 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGT-------------L 216 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCc-------------E
Confidence 776666555699999987443 357889999999999999999 69999999996 8999999988 3
Q ss_pred eeee---cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 304 ELCY---QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 304 ~~~~---~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+... ...+.|++++|||+..+|++++.-|+|++|.+
T Consensus 217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 3222 34678999999999998888889999999864
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.5e-19 Score=145.51 Aligned_cols=208 Identities=18% Similarity=0.215 Sum_probs=156.1
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEe-ecCCCccCCCCEEEEEEcCCC-CCEEEEEe
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLL-NSNKTSEFSSAITSFDWAGFD-TRRVATCS 143 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~ 143 (339)
.+|++.|+||+|+.+| .+|++|+| .+.|||.-..+ ++..+ .+|. ..|.++.|-|.. ..++++|.
T Consensus 47 ~GH~GCVN~LeWn~dG-----~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHt-----aNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG-----ELLASGSDDTRLIVWDPFEYK--LLHSISTGHT-----ANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred ccccceecceeecCCC-----CEEeecCCcceEEeecchhcc--eeeeeecccc-----cceeEEeeeccCCCeEEEecc
Confidence 6899999999999999 89999997 99999998655 55444 4676 899999999864 45788899
Q ss_pred CCCeEEEEECCCC----------eeeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEE-------
Q 040307 144 VDTTCVIWDIDRE----------ILETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIY------- 204 (339)
Q Consensus 144 ~d~~v~i~d~~~~----------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~------- 204 (339)
.|..|+++|+... +....+..|...|..++..| .+.+.+++.||+|+-+|+|.......-.
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 9999999999742 24455567888899998883 5899999999999999999864222111
Q ss_pred eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-----------------ceEEE-ecCC-----------
Q 040307 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-----------------PVVVL-SKHE----------- 255 (339)
Q Consensus 205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-----------------~~~~~-~~~~----------- 255 (339)
.....--...++..+|.+..+|++|+.+.. .++||.+...+ ++..+ .+|-
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 110122456789999999999999999999 99999543211 11111 1121
Q ss_pred CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 256 GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 256 ~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
..++-++|+|+|..+|++-+. ..|+++|+...+
T Consensus 274 ~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~ 306 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDK 306 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCC
Confidence 125678999999656666554 479999999877
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=5.2e-18 Score=128.22 Aligned_cols=241 Identities=17% Similarity=0.185 Sum_probs=174.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC--CcEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG--DSLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~--~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
.+|.+.|+++.|-.++ + |.+|. +.|++|.+.+.. ....++ .+. ..|+.+.--| + ..+.+-+.
T Consensus 11 Rp~~~~v~s~~fqa~~-----r-L~sg~~~G~V~~w~lqt~r--~~~~~r~~g~-----~~it~lq~~p-~-d~l~tqgR 75 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANE-----R-LMSGLSVGIVKMWVLQTER--DLPLIRLFGR-----LFITNLQSIP-N-DSLDTQGR 75 (323)
T ss_pred ccccchheehhhccch-----h-hhcccccceEEEEEeecCc--cchhhhhhcc-----ceeeceeecC-C-cchhhcCC
Confidence 4888999999998887 5 55665 399999999987 455555 333 6788888776 3 67888889
Q ss_pred CCeEEEEECCCCe------------------------ee-ee--e--------------------------eccCCceeE
Q 040307 145 DTTCVIWDIDREI------------------------LE-TQ--L--------------------------VAHDREVYD 171 (339)
Q Consensus 145 d~~v~i~d~~~~~------------------------~~-~~--~--------------------------~~~~~~v~~ 171 (339)
|+.+.+|++.-+. .. .. + .+..+.+.|
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 9999999886421 00 00 0 011234555
Q ss_pred EEec--C--CcEEEEEeCCCcEEEEECCCCcceeeE-------EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 172 ISWG--G--FNVFASVSGDCSVRVFDLRDKERSTII-------YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 172 ~~~~--~--~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
..+. . .-++++|-.+|.+.+||+.++.....+ .....|..++.++.+.+ .-..=++|+.+.. +..|+
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk-l~~~S 233 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK-LVMYS 233 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc-ceeee
Confidence 5554 2 235667788999999999987432221 22234778999999987 4344456666666 88888
Q ss_pred cCCCCC---ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEE
Q 040307 241 IRFPTN---PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVV 316 (339)
Q Consensus 241 ~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 316 (339)
+..... ...+.....-.|..+..-||+ +.+||++.|++||||+.++.. |+ ....|.+.|+++
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~-------------pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN-------------PLAVLKYHSAGVNAV 299 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC-------------chhhhhhhhcceeEE
Confidence 765311 112233334578999999999 799999999999999999988 66 455689999999
Q ss_pred EecCCCCceEEEecCCeEEEEeC
Q 040307 317 RWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 317 ~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|+|+.+.+++++.|++|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999887888999999999986
No 200
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=1.1e-17 Score=133.58 Aligned_cols=247 Identities=18% Similarity=0.257 Sum_probs=171.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecC------CCC-----C-cccceeeEeecCCCCceEEEEcCCC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFN------PET-----S-DFSADNRLIFDHPYTPTNIAFFPSE 83 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~------~~~-----~-~~~~~~~~~~~~~~~v~~l~~~~~~ 83 (339)
|...|+++.|+|+ |++||+|+ .+|.|.+|... .++ . .... .....+|...|..++|+|++
T Consensus 64 H~~aVN~vRf~p~---gelLASg~----D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 64 HTRAVNVVRFSPD---GELLASGG----DGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDS 135 (434)
T ss_pred CcceeEEEEEcCC---cCeeeecC----CCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCC
Confidence 6789999999999 99999999 89999998765 112 1 1221 12235799999999999999
Q ss_pred CCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 84 ETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 84 ~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
.++++++ + .+++||+..+. ....+..|. ..+..++|.| -++++++-+.|...+.+.+...+.+..
T Consensus 136 -----~~l~s~s~dns~~l~Dv~~G~--l~~~~~dh~-----~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 136 -----NFLVSGSVDNSVRLWDVHAGQ--LLAILDDHE-----HYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred -----ceeeeeeccceEEEEEeccce--eEeeccccc-----cccceeecch-hhhhhhhhccCcccceeeeeeeeeeee
Confidence 8888887 5 99999999997 788888888 8899999998 889999999998777776654321111
Q ss_pred ee-------------------ccCC----ceeEEEec-CCcEEEEEeC----CC-----cEEEEECCCCcceeeEEeCCC
Q 040307 162 LV-------------------AHDR----EVYDISWG-GFNVFASVSG----DC-----SVRVFDLRDKERSTIIYENPV 208 (339)
Q Consensus 162 ~~-------------------~~~~----~v~~~~~~-~~~~l~~~~~----d~-----~i~i~d~~~~~~~~~~~~~~~ 208 (339)
.. .|.. -...++|+ ++.++++.+. .+ ..++|+-...+.+......
T Consensus 203 ~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~-- 280 (434)
T KOG1009|consen 203 HGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS-- 280 (434)
T ss_pred eeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC--
Confidence 10 0111 12345677 5667665532 12 2344443333333322222
Q ss_pred CCCCeEEEEEec-----------------CCCCeEEEEeeCCCeEEEEecCCCCCceE-EEecCCCCeeEEEeccCCCCe
Q 040307 209 QDCPLLRLEWNK-----------------ADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLSKHEGSVNGISWAPLYGRR 270 (339)
Q Consensus 209 ~~~~v~~~~~~p-----------------~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~ 270 (339)
...+...+.++| .-+-.+|+++.+. +++||.... .|+. .-.-|-..++.++|+++| ..
T Consensus 281 ~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s--vyvydtq~~-~P~~~v~nihy~~iTDiaws~dg-~~ 356 (434)
T KOG1009|consen 281 PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS--VYVYDTQTL-EPLAVVDNIHYSAITDIAWSDDG-SV 356 (434)
T ss_pred CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecce--EEEeccccc-cceEEEeeeeeeeecceeecCCC-cE
Confidence 334455555544 0233556666654 999999874 4444 445588899999999999 59
Q ss_pred EEEEeCCCcEEEEEecCCC
Q 040307 271 LCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 271 l~~~~~dg~v~iwd~~~~~ 289 (339)
|+..|.||-..+.-++..+
T Consensus 357 l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 357 LLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEeccCCceEEEEEcchh
Confidence 9999999998888777665
No 201
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.80 E-value=3.1e-17 Score=128.56 Aligned_cols=307 Identities=15% Similarity=0.245 Sum_probs=200.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC-cccceeeE-----------eecCCCCceEEEEcCCC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS-DFSADNRL-----------IFDHPYTPTNIAFFPSE 83 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~-~~~~~~~~-----------~~~~~~~v~~l~~~~~~ 83 (339)
..+-|.++.|... |.+||+|. .+|.|.++.-+.... +......+ ...-...|+.+.|.+++
T Consensus 24 eadiis~vef~~~---Ge~LatGd----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 24 EADIISAVEFDHY---GERLATGD----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hhcceeeEEeecc---cceEeecC----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 3567999999999 99999999 799999976543332 22211111 01224568999999987
Q ss_pred CCCCCCeEEEeCC-cEEEEeecCCccee------------------EEEeecCC-----------CccCCCCEEEEEEcC
Q 040307 84 ETLNPDIVATSGD-SLRLWEIHDDRTEL------------------KSLLNSNK-----------TSEFSSAITSFDWAG 133 (339)
Q Consensus 84 ~~~~~~~la~~~~-~i~iw~~~~~~~~~------------------~~~~~~~~-----------~~~~~~~i~~~~~~~ 133 (339)
.. ..+|+++.| +|++|.+.....+. +-.+..|. ...|.-.|+++.++.
T Consensus 97 n~--a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 97 NL--AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred Cc--cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 32 256667777 99999986543111 11111111 223446789999996
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe---eeeeeecc-----CCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcce---
Q 040307 134 FDTRRVATCSVDTTCVIWDIDREI---LETQLVAH-----DREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERS--- 200 (339)
Q Consensus 134 ~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~-----~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~--- 200 (339)
|...++++ .|=.|.+|+++-.. .+.-++.+ ..-|++..|+| .+.|+-.+..|+|++-|+|.....
T Consensus 175 -D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 175 -DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred -ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 88888875 47889999986432 12222222 34688899993 788999999999999999965321
Q ss_pred eeEEeCCC----------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC------------C-
Q 040307 201 TIIYENPV----------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG------------S- 257 (339)
Q Consensus 201 ~~~~~~~~----------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~------------~- 257 (339)
..+++.+. --..|..+.|++ +|+++++-..- .|++||+....+|+.+.+.|.. .
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDyl--tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDYL--TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEeccc--eeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 11222211 124678899996 99999975443 3999999888889998887753 2
Q ss_pred --eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC---CC----CCCCcccceeee---------------ccccee
Q 040307 258 --VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG---NG----GPSGDVEPELCY---------------QSMAEI 313 (339)
Q Consensus 258 --v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~~----~~~~~~~~~~~~---------------~~~~~i 313 (339)
-..++|+-++ ..++||+..+.++++++..+..+.. .+ .+.....+.... .....|
T Consensus 330 fdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kki 408 (433)
T KOG1354|consen 330 FDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKI 408 (433)
T ss_pred hheeEEEEcCCc-ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHH
Confidence 2468899988 5999999999999999766553110 00 011111111111 113347
Q ss_pred EEEEecCCCCceEEEecCCeEEEEe
Q 040307 314 NVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 314 ~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
...+|+|... .+|+..-+.+.+|.
T Consensus 409 lh~aWhp~en-~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 409 LHTAWHPKEN-SIAVAATNNLYIFQ 432 (433)
T ss_pred HhhccCCccc-eeeeeecCceEEec
Confidence 7789999986 66666666676663
No 202
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=143.33 Aligned_cols=221 Identities=16% Similarity=0.212 Sum_probs=162.0
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eccCCceeEEEec---CCcEEEEEeC
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VAHDREVYDISWG---GFNVFASVSG 185 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~---~~~~l~~~~~ 185 (339)
+...+.+|+ +.|++++|+. +|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|- ++.++++|..
T Consensus 42 lE~eL~GH~-----GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 42 LEAELTGHT-----GCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred hhhhhcccc-----ceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 445678888 9999999997 9999999999999999999877777766 5899999999998 4779999999
Q ss_pred CCcEEEEECCCCc---------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---
Q 040307 186 DCSVRVFDLRDKE---------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--- 253 (339)
Q Consensus 186 d~~i~i~d~~~~~---------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--- 253 (339)
|..|++||+...+ .....+.. |...|..++-.|...+.+.++++||. ++-+|++.+..+-.....
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~c--ht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSC--HTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhh--hhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHH
Confidence 9999999998632 22223333 66788889999866699999999999 999999974432222211
Q ss_pred ------CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc-----eeee--cc-----------
Q 040307 254 ------HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP-----ELCY--QS----------- 309 (339)
Q Consensus 254 ------~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~--~~----------- 309 (339)
.--...++..+|..+.+|++|+.|--.++||.+...+.....+.....+| ...+ +|
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRY 272 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccc
Confidence 11256789999999899999999999999996543321111111111111 1111 11
Q ss_pred cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 310 MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 310 ~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...++-+.|+|+|..|+..=....|.+++|
T Consensus 273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred eeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 112677899999987776655666777765
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=7e-18 Score=139.44 Aligned_cols=264 Identities=15% Similarity=0.238 Sum_probs=175.6
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEe-cCCCCCcccceeeEeecCCCCceEEEEcCC--CCC-CCCCeE
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVN-FNPETSDFSADNRLIFDHPYTPTNIAFFPS--EET-LNPDIV 91 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~-~~~~~l 91 (339)
+..-+.|+.|+.. ...+.++. |..+.+|. ...+..+... .....-.+.+..-+- +.+ ++..++
T Consensus 13 ~~e~vc~v~w~~~---eei~~~~d-----Dh~~~~~~~~~~~s~~~~~-----~p~df~pt~~h~~~rs~~~g~~~d~~~ 79 (737)
T KOG1524|consen 13 NSEKVCCVDWSSN---EEIYFVSD-----DHQIFKWSDVSRDSVEVAK-----LPDDFVPTDMHLGGRSSGGGKGSDTLL 79 (737)
T ss_pred cceeEEeeccccc---ceEEEecc-----CceEEEeecccchhhhhhh-----CCcccCCccccccccccCCCCCcceEE
Confidence 4455679999998 77777776 67776653 2222222111 111111111111111 111 122345
Q ss_pred EEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 92 ATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 92 a~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
++.+| .+.|.+-.. + .......|. +++.+-.|+| +|.-|+++++||.|++|.- +|-...++.....+|.
T Consensus 80 i~s~DGkf~il~k~~-r--VE~sv~AH~-----~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 80 ICSNDGRFVILNKSA-R--VERSISAHA-----AAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIR 149 (737)
T ss_pred EEcCCceEEEecccc-h--hhhhhhhhh-----hhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeE
Confidence 55556 776665332 2 344556666 8999999998 9999999999999999995 5554445555667899
Q ss_pred EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
|++|. +.+.++.+. .+.+.+=-+..+..+.. ... |++-|.++.|+| ..+++++|++|-. .++||.. +.++.
T Consensus 150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~-WkA--HDGiiL~~~W~~-~s~lI~sgGED~k-fKvWD~~--G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIR-WRA--HDGLVLSLSWST-QSNIIASGGEDFR-FKIWDAQ--GANLF 221 (737)
T ss_pred EEEECCCCCceEEec-CCeEEEeecccccceeE-Eec--cCcEEEEeecCc-cccceeecCCcee-EEeeccc--Ccccc
Confidence 99999 444444332 35666655555543332 333 889999999998 8899999999998 9999975 66788
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307 250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
.-..|..+|++++|+|+. .++.++.+ +++ ++ ....+.|..++|||||..+..++
T Consensus 222 ~S~~~ey~ITSva~npd~--~~~v~S~n-t~R---~~--------------------~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 222 TSAAEEYAITSVAFNPEK--DYLLWSYN-TAR---FS--------------------SPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred cCChhccceeeeeecccc--ceeeeeee-eee---ec--------------------CCCccceEEEEEcCCCceeeccc
Confidence 888899999999999993 67777643 333 11 12356799999999998777777
Q ss_pred cCCeEEE
Q 040307 330 FVNKLQL 336 (339)
Q Consensus 330 ~d~~v~~ 336 (339)
..|.+.+
T Consensus 276 ~~G~v~~ 282 (737)
T KOG1524|consen 276 STGQLIV 282 (737)
T ss_pred cCceEEE
Confidence 7776644
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=2.3e-19 Score=145.50 Aligned_cols=268 Identities=13% Similarity=0.171 Sum_probs=207.2
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
....+.+.++.+ |.+|+.|+ ..|.|..+||......+. +.-...|..+.|..+. +++|++-.
T Consensus 129 eFGPY~~~ytrn---GrhlllgG----rKGHlAa~Dw~t~~L~~E------i~v~Etv~Dv~~LHne-----q~~AVAQK 190 (545)
T KOG1272|consen 129 EFGPYHLDYTRN---GRHLLLGG----RKGHLAAFDWVTKKLHFE------INVMETVRDVTFLHNE-----QFFAVAQK 190 (545)
T ss_pred ccCCeeeeecCC---ccEEEecC----Cccceeeeecccceeeee------eehhhhhhhhhhhcch-----HHHHhhhh
Confidence 457788999999 99999999 799999988876544433 4556789999999998 89999987
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
.++|||-..-+ +.-++.+ ..|..+.|-| ..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+
T Consensus 191 ~y~yvYD~~GtE---lHClk~~------~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 191 KYVYVYDNNGTE---LHCLKRH------IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred ceEEEecCCCcE---Eeehhhc------Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 99999976554 4444444 5899999998 77889999999999999999999999998778888888888
Q ss_pred C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307 176 G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH 254 (339)
Q Consensus 176 ~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~ 254 (339)
| +..+-+|...|+|.+|.....+....+.. |.++|.++++.+ +|+|+++.+.|.. ++|||++...+ +.++..
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skePLvKiLc---H~g~V~siAv~~-~G~YMaTtG~Dr~-~kIWDlR~~~q-l~t~~t- 333 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILC---HRGPVSSIAVDR-GGRYMATTGLDRK-VKIWDLRNFYQ-LHTYRT- 333 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcchHHHHHh---cCCCcceEEECC-CCcEEeecccccc-eeEeeeccccc-cceeec-
Confidence 5 56777888999999999998886666554 678999999998 9999999999999 99999998554 344433
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
..+...+++|..| +||.+ ....|.||.=..... + ....|.+.....++|.++.|+|-.. ++..+.
T Consensus 334 p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~d~~~~s------~-~~~~pYm~H~~~~~V~~l~FcP~ED-vLGIGH 398 (545)
T KOG1272|consen 334 PHPASNLSLSQKG--LLALS-YGDHVQIWKDALKGS------G-HGETPYMNHRCGGPVEDLRFCPYED-VLGIGH 398 (545)
T ss_pred CCCcccccccccc--ceeee-cCCeeeeehhhhcCC------C-CCCcchhhhccCcccccceeccHHH-eeeccc
Confidence 4567788998876 45544 445799995333220 0 0122444444566899999999764 554443
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=5e-17 Score=141.22 Aligned_cols=234 Identities=14% Similarity=0.125 Sum_probs=155.7
Q ss_pred CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCC
Q 040307 45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKT 119 (339)
Q Consensus 45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~ 119 (339)
+..|.+|+++.. ... .+ ..+...+...+|+|++ +.|+..+ + .|++||+.+++...+..+.++
T Consensus 183 ~~~i~i~d~dg~--~~~---~l-t~~~~~v~~p~wSPDG-----~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-- 249 (429)
T PRK01742 183 PYEVRVADYDGF--NQF---IV-NRSSQPLMSPAWSPDG-----SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-- 249 (429)
T ss_pred eEEEEEECCCCC--Cce---Ee-ccCCCccccceEcCCC-----CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc--
Confidence 467888665533 322 22 5677889999999999 7777654 2 799999988764344444433
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEE--ECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEEC
Q 040307 120 SEFSSAITSFDWAGFDTRRVATCS-VDTTCVIW--DIDREILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDL 194 (339)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~--d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~ 194 (339)
....+|+| +++.|+.+. .+|.+.|| |+.+++ ...+..+...+....|+ +++.|+.++ .++...+|++
T Consensus 250 ------~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 250 ------NGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ------cCceeECC-CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 33689998 898888764 67765554 665554 44555666778899999 777666554 5788888887
Q ss_pred CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307 195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV 274 (339)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 274 (339)
........... +.. ....|+| +++.|+..+.++ +.+||+... .. ..+..+ .....+.|+|++ ++|+.+
T Consensus 322 ~~~~~~~~~l~---~~~--~~~~~Sp-DG~~ia~~~~~~--i~~~Dl~~g-~~-~~lt~~-~~~~~~~~sPdG-~~i~~~ 389 (429)
T PRK01742 322 SASGGGASLVG---GRG--YSAQISA-DGKTLVMINGDN--VVKQDLTSG-ST-EVLSST-FLDESPSISPNG-IMIIYS 389 (429)
T ss_pred ECCCCCeEEec---CCC--CCccCCC-CCCEEEEEcCCC--EEEEECCCC-Ce-EEecCC-CCCCCceECCCC-CEEEEE
Confidence 54332222222 222 4578998 888888777654 777998763 32 222221 234578899999 599999
Q ss_pred eCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 275 ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 275 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
+.++...+|++.... ......+..|.+.+...+|+|-
T Consensus 390 s~~g~~~~l~~~~~~----------G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 390 STQGLGKVLQLVSAD----------GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EcCCCceEEEEEECC----------CCceEEccCCCCCCCCcccCCC
Confidence 889999988875432 0123344467778899999985
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=4e-17 Score=144.91 Aligned_cols=245 Identities=15% Similarity=0.145 Sum_probs=174.3
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEc-CCCCCEEEEEeCCCeE
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWA-GFDTRRVATCSVDTTC 148 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~d~~v 148 (339)
.+...+.|+|-. ..++++.+ .|++||.+.++ ....|..+. .....|+.+.+- ..|..++++|+.||.|
T Consensus 1065 ~~pk~~~~hpf~-----p~i~~ad~r~~i~vwd~e~~~--~l~~F~n~~--~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFE-----PQIAAADDRERIRVWDWEKGR--LLNGFDNGA--FPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred CCCceeeecCCC-----ceeEEcCCcceEEEEecccCc--eeccccCCC--CCCCccceeeeecccchhheeeeccCceE
Confidence 346778899998 77777774 99999999887 555555433 122578888874 3366799999999999
Q ss_pred EEEECCC-----Ceeeeeeecc-------CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307 149 VIWDIDR-----EILETQLVAH-------DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLR 215 (339)
Q Consensus 149 ~i~d~~~-----~~~~~~~~~~-------~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 215 (339)
+||+--. .+.+..+.+- .+.-.-+.|. ...+|+++|.-..|+|||........-+... ...-+++
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--s~t~vTa 1213 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--SSTLVTA 1213 (1387)
T ss_pred EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--CCcccee
Confidence 9997422 2223222211 1111235566 4555666666889999999987755544433 3456777
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCCC--ceEEEecCCCC--eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTN--PVVVLSKHEGS--VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~ 291 (339)
+.-+-..|+.+++|..||. |++||.|.... ++...+.|+.. |..+.+.+.|-.-|++|+.||.|++||++...
T Consensus 1214 LS~~~~~gn~i~AGfaDGs-vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-- 1290 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGS-VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-- 1290 (1387)
T ss_pred ecccccCCceEEEeecCCc-eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--
Confidence 7666557899999999999 99999997543 66777888877 99999999875459999999999999999954
Q ss_pred CCCCCCCCcccceeeecc---cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 292 SGNGGPSGDVEPELCYQS---MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
......+..| .+..+++..|++.+.+++|+. +.|.||++
T Consensus 1291 --------~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1291 --------KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred --------ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 1123333333 335999999999984444445 99999975
No 207
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.3e-17 Score=135.29 Aligned_cols=284 Identities=13% Similarity=0.128 Sum_probs=198.1
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEE-EEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC-CceEEEEcCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRL-AVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY-TPTNIAFFPSEETL 86 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~l-a~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~ 86 (339)
+.+..|.++..-+.|..+|| |+|+ |+|. +.-.|++|++..-..++.. .... .|.-.-.+.|-+
T Consensus 43 eLiQdfe~p~ast~ik~s~D---GqY~lAtG~----YKP~ikvydlanLSLKFER------hlDae~V~feiLsDD~S-- 107 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPD---GQYLLATGT----YKPQIKVYDLANLSLKFER------HLDAEVVDFEILSDDYS-- 107 (703)
T ss_pred HHHHhcCCccccceeEecCC---CcEEEEecc----cCCceEEEEcccceeeeee------cccccceeEEEeccchh--
Confidence 45677888999999999999 8866 5566 7999999887765555443 2223 333333444442
Q ss_pred CCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307 87 NPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 87 ~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 165 (339)
+.+.-..| .|.+-.-- + ....+.-. ..-.+|+++..+..+++. +....|+-++++.|+.+..+...
T Consensus 108 --K~v~L~~DR~IefHak~-G---~hy~~RIP------~~GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 108 --KSVFLQNDRTIEFHAKY-G---RHYRTRIP------KFGRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred --hheEeecCceeeehhhc-C---eeeeeecC------cCCccccccCCCccEEEe-ecCcceEEEEccccccccccccc
Confidence 44445555 55543322 1 11112111 234567777545555554 44567888899999999988877
Q ss_pred CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC---C-----CCCeEEEEEecCCCCeEEEEeeCCCeE
Q 040307 166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV---Q-----DCPLLRLEWNKADPRFMATVGMDSNKV 236 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~-----~~~v~~~~~~p~~~~~l~~~~~d~~~i 236 (339)
.+.++++..+ -..+|++|+.+|.|..||.|.......+..... + ...|+++.|+ ++|-.+++|+.+|. +
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~-v 252 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGS-V 252 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCc-E
Confidence 7899999999 577888888899999999999876555433211 2 2348999998 47999999999999 9
Q ss_pred EEEecCCCCCceEEEecCCCCeeEEEeccCCC-CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEE
Q 040307 237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG-RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV 315 (339)
Q Consensus 237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 315 (339)
.|||++.....+..-.+..-+|..+.|.+.+. ..+++. ....++|||-.+++ +.........++.
T Consensus 253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk-------------~~asiEpt~~lND 318 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK-------------PMASIEPTSDLND 318 (703)
T ss_pred EEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC-------------ceeeccccCCcCc
Confidence 99999984443333344456899999988742 244444 45789999999998 6766666677999
Q ss_pred EEecCCCCceEEEecCCeEEE
Q 040307 316 VRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 316 ~~~~p~~~~l~~~~~d~~v~~ 336 (339)
+++-|++..++++-.+..+..
T Consensus 319 ~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 319 FCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred eeeecCCceEEEecCCCccee
Confidence 999999877777766665543
No 208
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.79 E-value=1.9e-16 Score=121.63 Aligned_cols=288 Identities=16% Similarity=0.145 Sum_probs=193.1
Q ss_pred ccEEEEeee--ccc------cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEe--CCcEEE
Q 040307 32 KSRLAVGSF--LED------YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATS--GDSLRL 100 (339)
Q Consensus 32 ~~~la~g~~--~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~--~~~i~i 100 (339)
.+.||+|++ ..+ ..|++.+|++......... .+...-...+..+.|..-.... . .++-+ .+.|.+
T Consensus 24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~--~~q~~dts~~~dm~w~~~~~~g--~~~l~~a~a~G~i~~ 99 (339)
T KOG0280|consen 24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLD--TLQCTDTSTEFDMLWRIRETDG--DFNLLDAHARGQIQL 99 (339)
T ss_pred cceEEEeeEEecCCCCchheeccceEEEeecccccCccc--eeeeecccccceeeeeeccCCc--cceeeeccccceEEE
Confidence 348999987 111 4578888777654433311 2212334567888887533211 3 22222 238888
Q ss_pred EeecCCcceeEEEeecCCCccCC-CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee--eeeeeccCCceeEEEec--
Q 040307 101 WEIHDDRTELKSLLNSNKTSEFS-SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL--ETQLVAHDREVYDISWG-- 175 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~-- 175 (339)
+.....+ ....+++-...... ....++.|++ .+..++++..+|.+.+-+...... ++.++.|.-+++-..|+
T Consensus 100 ~r~~~~~--ss~~L~~ls~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~ 176 (339)
T KOG0280|consen 100 YRNDEDE--SSVHLRGLSSKKISVVEALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK 176 (339)
T ss_pred Eeeccce--eeeeecccchhhhhheeeeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC
Confidence 8876654 33334332211111 1245788997 888899999999999666555443 34778999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC
Q 040307 176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE 255 (339)
Q Consensus 176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~ 255 (339)
+.+++.+|+.|+.+..||+|.+... .......|...|.++.-+|..+.++++|+.|.. |++||.|+.++|+..-.. .
T Consensus 177 ~pnlvytGgDD~~l~~~D~R~p~~~-i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~v-~ 253 (339)
T KOG0280|consen 177 EPNLVYTGGDDGSLSCWDIRIPKTF-IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAKV-G 253 (339)
T ss_pred CCceEEecCCCceEEEEEecCCcce-eeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCcc-c
Confidence 6799999999999999999955522 222233467889999999989999999999999 999999988998876654 5
Q ss_pred CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce--eeecccceeEEEEecCCCCceEEEe-cCC
Q 040307 256 GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSMAEINVVRWSPLELDWIAIA-FVN 332 (339)
Q Consensus 256 ~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~-~d~ 332 (339)
+.|+.+.++|.-...|+.+..-+-.+|-+.+.... ..+.. ....|.+-.+.-.|......+++++ .|+
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~---------e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk 324 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL---------EFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDK 324 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcCceEEEeccccc---------chheeeeccccccceeeccccccccceeeeeecccc
Confidence 78999999997533444555555678888877650 00111 2335777888889965544344443 788
Q ss_pred eEE-EEe
Q 040307 333 KLQ-LLK 338 (339)
Q Consensus 333 ~v~-~w~ 338 (339)
.++ +|-
T Consensus 325 ~~~~~Wl 331 (339)
T KOG0280|consen 325 KIRQLWL 331 (339)
T ss_pred ceeeeee
Confidence 855 773
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=7e-17 Score=128.57 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=178.4
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccccee---eEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN---RLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
...|.+++|.-+++ .+.|...+ .+..+..+.+. ...+.... .........|..++... + .++.+
T Consensus 55 ~~ris~l~~~~d~~-tevl~~r~----~~~~~~~~~~~--E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g-----~Litc 121 (412)
T KOG3881|consen 55 LDRISSLLFGVDGE-TEVLNARS----ADDDLPKFVIE--EFEISSSLDDAKTVSLGTKSIKGLKLAD-G-----TLITC 121 (412)
T ss_pred hhhhhhheeecCCc-eeEeeccc----cCccccccccc--CCccccccccccccccccccccchhhcC-C-----EEEEE
Confidence 35677888886633 33343333 24555553333 22222200 01123456677777653 3 34444
Q ss_pred eCC-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeecc---
Q 040307 94 SGD-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--TTCVIWDIDREILETQLVAH--- 165 (339)
Q Consensus 94 ~~~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~--- 165 (339)
-++ .+.+|..+.+. ......+..+ ..+..+.-++.....+++|+.. ..+.+||+++.+.+.+-+.-
T Consensus 122 ~~sG~l~~~~~k~~d~hss~l~~la~g------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 122 VSSGNLQVRHDKSGDLHSSKLIKLATG------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred ecCCcEEEEeccCCccccccceeeecC------CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 444 99999998543 2244444444 4667777777677888889998 89999999887655443321
Q ss_pred ------CCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeE
Q 040307 166 ------DREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKV 236 (339)
Q Consensus 166 ------~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i 236 (339)
.-.++++.|- + ...|+++..-+.+++||.+.++.+...+.. .+.++.++...| +++++++|..-+. +
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~--~E~~is~~~l~p-~gn~Iy~gn~~g~-l 271 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF--LENPISSTGLTP-SGNFIYTGNTKGQ-L 271 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc--ccCcceeeeecC-CCcEEEEecccch-h
Confidence 1245778887 3 789999999999999999998877776666 567999999998 9999999999998 9
Q ss_pred EEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
..||++....+...+.+-.+.|++|..+|.+ .+|++++-|..|+|+|+++..
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred heecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccch
Confidence 9999998555555688889999999999999 599999999999999999965
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.4e-16 Score=122.09 Aligned_cols=248 Identities=14% Similarity=0.203 Sum_probs=167.0
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
+-.+.-++|++. -..+|++. .|..|++|+-+. .... .+....+..|+|++|-|.+. .-|+.|..
T Consensus 98 ~~dlr~~aWhqH---~~~fava~----nddvVriy~kss--t~pt---~Lks~sQrnvtclawRPlsa----selavgCr 161 (445)
T KOG2139|consen 98 EIDLRGVAWHQH---IIAFAVAT----NDDVVRIYDKSS--TCPT---KLKSVSQRNVTCLAWRPLSA----SELAVGCR 161 (445)
T ss_pred hcceeeEeechh---hhhhhhhc----cCcEEEEeccCC--CCCc---eecchhhcceeEEEeccCCc----ceeeeeec
Confidence 346788999998 88889999 699999965443 2221 23345677899999999986 67888876
Q ss_pred -cEEEEeecCCc--ceeEEEeecC-----CCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeeeccCC
Q 040307 97 -SLRLWEIHDDR--TELKSLLNSN-----KTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 97 -~i~iw~~~~~~--~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~ 167 (339)
-|.||..+... ...+.....| +..+| .+|++|.|++ |+..+++++. |..|.|||..++..+.......+
T Consensus 162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 99999876432 0011111111 11223 6999999998 8988888875 67899999998876555434456
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
.+.-+.|+ ++++|+++.-|+..++|..........-... .+.|...+|+| .|+.|+...... -.+|.+...++
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg---sgrvqtacWsp-cGsfLLf~~sgs--p~lysl~f~~~ 313 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG---SGRVQTACWSP-CGSFLLFACSGS--PRLYSLTFDGE 313 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc---CCceeeeeecC-CCCEEEEEEcCC--ceEEEEeecCC
Confidence 78899999 7999999999999999965444322222222 35899999999 777665544433 45555543222
Q ss_pred ceE--------------EE-----ecC----CCCeeEEEeccCCCCeEEEEeCCC--------cEEEEEecCCC
Q 040307 247 PVV--------------VL-----SKH----EGSVNGISWAPLYGRRLCSVADDS--------RALIWEVVGPG 289 (339)
Q Consensus 247 ~~~--------------~~-----~~~----~~~v~~~~~~p~~~~~l~~~~~dg--------~v~iwd~~~~~ 289 (339)
+.. .+ ... .+++.+++|.|.|+ +||+.-..+ .|.+||.+...
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 110 11 011 35788999999995 888766433 36667666544
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=138.25 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=165.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEE-eecCCcceeEEEeecCCCccCCCCEEE---EEEcC-CCCCEEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLW-EIHDDRTELKSLLNSNKTSEFSSAITS---FDWAG-FDTRRVAT 141 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~-~~~~~l~~ 141 (339)
..|...|.|+.|+... .++.+++| .+.+| ++.+...+........- .+... ..--. .....|+.
T Consensus 11 ~r~~e~vc~v~w~~~e-----ei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~-----pt~~h~~~rs~~~g~~~d~~~i 80 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNE-----EIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFV-----PTDMHLGGRSSGGGKGSDTLLI 80 (737)
T ss_pred cccceeEEeecccccc-----eEEEeccCceEEEeecccchhhhhhhCCcccC-----CccccccccccCCCCCcceEEE
Confidence 3566677899999988 78888877 55555 44443311111111100 01000 00000 13457888
Q ss_pred EeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307 142 CSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK 220 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p 220 (339)
++.||.+.+.+- .++..+.+.+|.+.+.+-.|+ +|.-|++++.||.|++|.-...- ...+.. ...+|.|++|.|
T Consensus 81 ~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-RStl~Q---~~~~v~c~~W~p 155 (737)
T KOG1524|consen 81 CSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-RSTVVQ---NEESIRCARWAP 155 (737)
T ss_pred EcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-HHHHhh---cCceeEEEEECC
Confidence 899999999874 566777888999999999999 89999999999999999844332 222222 246899999999
Q ss_pred CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307 221 ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 221 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
+..+.+++.+. . +.|=-+.. ...+...++|.+-|.++.|+|.. .++++|++|-..+|||.....
T Consensus 156 ~S~~vl~c~g~--h-~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~----------- 219 (737)
T KOG1524|consen 156 NSNSIVFCQGG--H-ISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN----------- 219 (737)
T ss_pred CCCceEEecCC--e-EEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc-----------
Confidence 66666665432 2 66666665 34456788999999999999998 599999999999999988765
Q ss_pred ccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
......|..+|++++|.|+ . +++.+.-+++|+
T Consensus 220 --Lf~S~~~ey~ITSva~npd-~-~~~v~S~nt~R~ 251 (737)
T KOG1524|consen 220 --LFTSAAEEYAITSVAFNPE-K-DYLLWSYNTARF 251 (737)
T ss_pred --cccCChhccceeeeeeccc-c-ceeeeeeeeeee
Confidence 5566779999999999999 3 555555555553
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-16 Score=137.60 Aligned_cols=234 Identities=15% Similarity=0.158 Sum_probs=170.3
Q ss_pred EEEEcCCCCCCCCCeEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCC--CEEEEEeCCCeEEEEE
Q 040307 76 NIAFFPSEETLNPDIVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDT--RRVATCSVDTTCVIWD 152 (339)
Q Consensus 76 ~l~~~~~~~~~~~~~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d 152 (339)
...|++|+ +.+.... +.|.||...+++ ++..+.+|. .+++.+.+.|... .++.+++.+|.|++||
T Consensus 21 ~avfSnD~-----k~l~~~~~~~V~VyS~~Tg~--~i~~l~~~~-----a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 21 PAVFSNDA-----KFLFLCTGNFVKVYSTATGE--CITSLEDHT-----APLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred ccccccCC-----cEEEEeeCCEEEEEecchHh--hhhhccccc-----CccceeeecCCCccceEEEEEecCccEEEec
Confidence 34689999 5555555 599999999998 888999998 8999999987544 4677999999999999
Q ss_pred CCCCeeeeeeeccCCceeE-----------------------------------------------------------EE
Q 040307 153 IDREILETQLVAHDREVYD-----------------------------------------------------------IS 173 (339)
Q Consensus 153 ~~~~~~~~~~~~~~~~v~~-----------------------------------------------------------~~ 173 (339)
...+..++++..+. ++.. +.
T Consensus 89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 98887666553211 1111 11
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC---CCCceE
Q 040307 174 WGGFNVFASVSGDCSVRVFDLRDKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF---PTNPVV 249 (339)
Q Consensus 174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~---~~~~~~ 249 (339)
++++..+.....+..+.+|...+...... ......|...+++.+++| +++++|++..||. |.+|.--. ......
T Consensus 168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGr-I~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGR-ILVWRDFGSSDDSETCT 245 (792)
T ss_pred EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCc-EEEEeccccccccccce
Confidence 11111111122233445555544331110 011123555678999999 9999999999999 99995322 223456
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307 250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
.+.-|...|.+++|+++| .+|++|+.++.+.+|.+.+++ +.....-.++|..+.+|||+.......
T Consensus 246 ~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~-------------kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGK-------------KQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred EEEecccccceeEEecCC-ceEeecccceEEEEEeecCCC-------------cccccccCCeeEEEEEcCCCCeEEEEe
Confidence 778899999999999999 599999999999999999988 566667788999999999998777788
Q ss_pred cCCeEEEEe
Q 040307 330 FVNKLQLLK 338 (339)
Q Consensus 330 ~d~~v~~w~ 338 (339)
.|+.|.+.+
T Consensus 312 ~DNqI~li~ 320 (792)
T KOG1963|consen 312 EDNQIHLIK 320 (792)
T ss_pred cCceEEEEe
Confidence 999998865
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.5e-17 Score=133.54 Aligned_cols=198 Identities=21% Similarity=0.268 Sum_probs=151.7
Q ss_pred eEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307 75 TNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD 152 (339)
Q Consensus 75 ~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d 152 (339)
.+++|++++ ..+++++ | .+|||++.... .......|. ..|.++.|+| |++.|++-+.| ..+||+
T Consensus 148 k~vaf~~~g-----s~latgg~dg~lRv~~~Ps~~--t~l~e~~~~-----~eV~DL~FS~-dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGDG-----SKLATGGTDGTLRVWEWPSML--TILEEIAHH-----AEVKDLDFSP-DGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCCC-----CEeeeccccceEEEEecCcch--hhhhhHhhc-----CccccceeCC-CCcEEEEecCC-ceEEEE
Confidence 578999999 8999987 5 99999987765 444555555 8999999998 99999999999 999999
Q ss_pred CCCCeeeeeee--ccCCceeEEEec-CC---c--EEEEEeCCCcEEEEECCCCccee--eEEeCCCCCCCeEEEEEecCC
Q 040307 153 IDREILETQLV--AHDREVYDISWG-GF---N--VFASVSGDCSVRVFDLRDKERST--IIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 153 ~~~~~~~~~~~--~~~~~v~~~~~~-~~---~--~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~ 222 (339)
.+++..+.... .-......+.|+ ++ . +++....-+.|+.||+...+... ...........|.+++.++ +
T Consensus 214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-d 292 (398)
T KOG0771|consen 214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-D 292 (398)
T ss_pred eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-C
Confidence 99997666553 222345677888 44 2 23333445678887776544311 1111111235799999997 9
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
|++++.|+.+|. |.|++..........-+.|...|+.+.|+|+. +.+++.+.|....|..+....
T Consensus 293 Gkf~AlGT~dGs-Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 293 GKFLALGTMDGS-VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred CcEEEEeccCCc-EEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeecc
Confidence 999999999999 99999988665556667899999999999998 699999999999999888754
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.5e-17 Score=134.57 Aligned_cols=289 Identities=16% Similarity=0.218 Sum_probs=211.2
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|++.|..+.|+.. |..|++|+ .|..|.+|+|......... ..+|...|....|.|.... +-++++
T Consensus 140 ~H~GcVntV~FN~~---Gd~l~SgS----DD~~vv~WdW~~~~~~l~f----~SGH~~NvfQaKFiP~s~d---~ti~~~ 205 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQR---GDVLASGS----DDLQVVVWDWVSGSPKLSF----ESGHCNNVFQAKFIPFSGD---RTIVTS 205 (559)
T ss_pred CCCCccceeeeccc---CceeeccC----ccceEEeehhhccCccccc----ccccccchhhhhccCCCCC---cCceec
Confidence 36789999999999 99999999 8999999999987766654 5689999999999987642 445555
Q ss_pred C-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccCC-
Q 040307 95 G-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHDR- 167 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~- 167 (339)
+ + .+++=.+.... .+....+..|. ++|..++.-|.+...|.+++.|+.+.-+|++++.+...+ ..+..
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~-----g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHE-----GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred cccCceeeeeeccccceecceeccccc-----CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 5 5 88877665443 23345566676 899999999988899999999999999999887644333 22333
Q ss_pred --ceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceee-----EEeC----CCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307 168 --EVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTI-----IYEN----PVQDCPLLRLEWNKADPRFMATVGMDSN 234 (339)
Q Consensus 168 --~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-----~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 234 (339)
....++.. +.+.+++++.|..+++||.+.-..... .+.. ......|++++|+...+.+|++ -.|..
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~ 359 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDED 359 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee-ecccc
Confidence 45677777 467899999999999999986543211 0110 0234578999999634445554 45555
Q ss_pred eEEEEecCCCC-----------CceEE-EecCCC--CeeEEEe-ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307 235 KVVVLDIRFPT-----------NPVVV-LSKHEG--SVNGISW-APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG 299 (339)
Q Consensus 235 ~i~i~d~~~~~-----------~~~~~-~~~~~~--~v~~~~~-~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 299 (339)
|+++.-.... ..+.. +++|.. .|..+-| -|.. .++++|+.=|.|.||+-.+.+
T Consensus 360 -IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~e---------- 427 (559)
T KOG1334|consen 360 -IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGE---------- 427 (559)
T ss_pred -eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhH----------
Confidence 9999443211 11222 567754 5777765 5676 599999999999999999887
Q ss_pred cccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 300 DVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 300 ~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.+ .+.+...-|+|+.-+|.-+.|++.+-|.-|+||-
T Consensus 428 ---ii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 428 ---IIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ---HHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 33 2233344899999999999888889999999994
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4e-16 Score=123.19 Aligned_cols=237 Identities=15% Similarity=0.185 Sum_probs=161.1
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v 148 (339)
+..+..++|++.- ..+|.+. | .|++|+-.... ...++... ...|++++|-|..+..|+.|.. +.|
T Consensus 98 ~~dlr~~aWhqH~-----~~fava~nddvVriy~ksst~---pt~Lks~s----QrnvtclawRPlsaselavgCr-~gI 164 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-----IAFAVATNDDVVRIYDKSSTC---PTKLKSVS----QRNVTCLAWRPLSASELAVGCR-AGI 164 (445)
T ss_pred hcceeeEeechhh-----hhhhhhccCcEEEEeccCCCC---Cceecchh----hcceeEEEeccCCcceeeeeec-cee
Confidence 4457889999976 5566665 4 99999987743 33333222 1689999999977777777765 668
Q ss_pred EEEECCCC----e----------eeeeeeccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCCCCCCC
Q 040307 149 VIWDIDRE----I----------LETQLVAHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENPVQDCP 212 (339)
Q Consensus 149 ~i~d~~~~----~----------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 212 (339)
.+|..... + .+....+| .+|++|+|. ++..+++++. |..|.|||..++........ ..+.
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---glgg 240 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---GLGG 240 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---CCCc
Confidence 89976421 1 11222344 589999999 8888888875 67899999999886665533 3467
Q ss_pred eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307 213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS 292 (339)
Q Consensus 213 v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~ 292 (339)
+.-+.|+| ++.+|++++-|+. .++|+.........-.. ..+.|....|+|+|+.+|++.+. .-++|.+......+
T Consensus 241 ~slLkwSP-dgd~lfaAt~dav-frlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sg--sp~lysl~f~~~~~ 315 (445)
T KOG2139|consen 241 FSLLKWSP-DGDVLFAATCDAV-FRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSG--SPRLYSLTFDGEDS 315 (445)
T ss_pred eeeEEEcC-CCCEEEEecccce-eeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcC--CceEEEEeecCCCc
Confidence 88999999 9999999999999 99996654333333333 35599999999999766666664 45667666655222
Q ss_pred CCCCCCCcccce--------eeec----ccceeEEEEecCCCCceEEEe
Q 040307 293 GNGGPSGDVEPE--------LCYQ----SMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 293 ~~~~~~~~~~~~--------~~~~----~~~~i~~~~~~p~~~~l~~~~ 329 (339)
...++......+ .+.. ..+.+.+++|.|.|.+|+..-
T Consensus 316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 211122111111 1111 256789999999999877554
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=1.1e-15 Score=137.94 Aligned_cols=306 Identities=15% Similarity=0.122 Sum_probs=199.0
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc-ccceeeEeec-CCCCceEEEEcCCCCCCCCCeE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD-FSADNRLIFD-HPYTPTNIAFFPSEETLNPDIV 91 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~l 91 (339)
++|...+..++.++. .+.++++|+ .||+|++|+...-.+. .......... ...++.++...+.+ +.+
T Consensus 1045 ~Ehs~~v~k~a~s~~--~~s~FvsgS----~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-----~~~ 1113 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSE--HTSLFVSGS----DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-----DQF 1113 (1431)
T ss_pred hhccccccceeecCC--CCceEEEec----CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-----CeE
Confidence 346777888888877 258999999 8999999987643332 1111122233 57789999999999 788
Q ss_pred EEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEE-EEcCCCCC-EEEEEeCCCeEEEEECCCCeeeeee
Q 040307 92 ATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSF-DWAGFDTR-RVATCSVDTTCVIWDIDREILETQL 162 (339)
Q Consensus 92 a~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~ 162 (339)
|.++ | .|++.+++... ..+......+. .+.+..| +|...... .++.+...+.|..||+++......+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~----~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK----DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccC----CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 8877 4 89998887632 11111112111 1334333 44433444 7888999999999999887655544
Q ss_pred e--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC--CeEEEEee-CCCeE
Q 040307 163 V--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP--RFMATVGM-DSNKV 236 (339)
Q Consensus 163 ~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~-d~~~i 236 (339)
+ ...+.|++++.+ -+++++.|...|.+.+||+|-+...... ..+ +..++..+..+|..+ ...++++. ..+.|
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw-~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW-EHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc-cCc-ccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 3 334689999999 5889999999999999999988744443 333 347888888887554 56666555 44459
Q ss_pred EEEecCCCCCceEEEecC-----------------CC--CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC------
Q 040307 237 VVLDIRFPTNPVVVLSKH-----------------EG--SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR------ 291 (339)
Q Consensus 237 ~i~d~~~~~~~~~~~~~~-----------------~~--~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~------ 291 (339)
.+|++.++ .....+... .. ......+..-+ .++++|+.|..|+.||.......
T Consensus 1268 s~wn~~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~~ss~~~~~ 1345 (1431)
T KOG1240|consen 1268 STWNMETG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPEISSYAVPG 1345 (1431)
T ss_pred eeeecccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcccccccccC
Confidence 99999874 333333221 01 11122222223 58999999999999998876521
Q ss_pred C---------------------CCC--------CCC------Ccccc---eeeecccceeEEEEecCCCC-ceEEEecCC
Q 040307 292 S---------------------GNG--------GPS------GDVEP---ELCYQSMAEINVVRWSPLEL-DWIAIAFVN 332 (339)
Q Consensus 292 ~---------------------~~~--------~~~------~~~~~---~~~~~~~~~i~~~~~~p~~~-~l~~~~~d~ 332 (339)
+ .++ ++. ....+ .....|..+|+++++....+ .+++++.||
T Consensus 1346 ~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG 1425 (1431)
T KOG1240|consen 1346 PSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDG 1425 (1431)
T ss_pred ccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCC
Confidence 0 000 000 00000 01224778899999887664 466788999
Q ss_pred eEEEEe
Q 040307 333 KLQLLK 338 (339)
Q Consensus 333 ~v~~w~ 338 (339)
.|++|+
T Consensus 1426 ~IkiWk 1431 (1431)
T KOG1240|consen 1426 VIKIWK 1431 (1431)
T ss_pred eeeecC
Confidence 999996
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=6.7e-18 Score=137.13 Aligned_cols=229 Identities=13% Similarity=0.130 Sum_probs=184.8
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v 148 (339)
.-..+.+.++.+| +.++.|+. .|..+|..+.. +...+... ..|.++.|- ++.++||++ ....+
T Consensus 129 eFGPY~~~ytrnG-----rhlllgGrKGHlAa~Dw~t~~--L~~Ei~v~------Etv~Dv~~L-Hneq~~AVA-QK~y~ 193 (545)
T KOG1272|consen 129 EFGPYHLDYTRNG-----RHLLLGGRKGHLAAFDWVTKK--LHFEINVM------ETVRDVTFL-HNEQFFAVA-QKKYV 193 (545)
T ss_pred ccCCeeeeecCCc-----cEEEecCCccceeeeecccce--eeeeeehh------hhhhhhhhh-cchHHHHhh-hhceE
Confidence 3456889999999 77777774 99999999987 55555543 478899998 366666665 56899
Q ss_pred EEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 149 VIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
+|||- .|..+..++.| ..|..+.|-| .-+|++++..|.++.-|+..++....+... .+.+..++-+| -...+-
T Consensus 194 yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~---~G~~~vm~qNP-~NaVih 267 (545)
T KOG1272|consen 194 YVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG---AGRTDVMKQNP-YNAVIH 267 (545)
T ss_pred EEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc---CCccchhhcCC-ccceEE
Confidence 99995 56667777655 4688999995 567778888999999999999866665544 56788889898 667888
Q ss_pred EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY 307 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 307 (339)
+|..+|. |.+|.... ..|+..+..|.++|.+|++.++| ++++|.+.|..++|||++... ++....
T Consensus 268 ~GhsnGt-VSlWSP~s-kePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~------------ql~t~~ 332 (545)
T KOG1272|consen 268 LGHSNGT-VSLWSPNS-KEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFY------------QLHTYR 332 (545)
T ss_pred EcCCCce-EEecCCCC-cchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecccc------------ccceee
Confidence 8999998 99999887 77888899999999999999999 799999999999999999987 344333
Q ss_pred cccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 308 QSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
. ..+...+++|..| ++|.+....|.+|+
T Consensus 333 t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 333 T-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred c-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 3 5567888888875 78888888899985
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=1.1e-15 Score=126.60 Aligned_cols=254 Identities=12% Similarity=0.157 Sum_probs=157.8
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC-CCeEEEeC-Cc
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN-PDIVATSG-DS 97 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~la~~~-~~ 97 (339)
+....++-. |++|+..- ...+.+|++..............+.- ....|=+|+....... -++|+.-+ +.
T Consensus 126 ~~~~~~~~~---gd~lcFnv-----g~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a~~~g~dllIGf~tGq 196 (636)
T KOG2394|consen 126 VTNTNQSGK---GDRLCFNV-----GRELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTATPKGLDLLIGFTTGQ 196 (636)
T ss_pred eeeccccCC---CCEEEEec-----CCeEEEEEccCcchhccchhhhcccC-CCCceecccccccCCCCcceEEeeccCc
Confidence 334444444 77777765 57888888774332222111111222 2234444532221111 13444333 47
Q ss_pred EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--
Q 040307 98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-- 175 (339)
Q Consensus 98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-- 175 (339)
+++.+....+...+.....+. . ...|+++.|-|.+...++.+-.+|.+++||.+ +....+...|.
T Consensus 197 vq~idp~~~~~sklfne~r~i--~-ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 197 VQLIDPINFEVSKLFNEERLI--N-KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQAL 263 (636)
T ss_pred eEEecchhhHHHHhhhhcccc--c-ccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCccccc
Confidence 777776654322211111111 1 16899999999888899999999999999972 11122222232
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307 176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH 254 (339)
Q Consensus 176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~ 254 (339)
++..|..... --.....+...+.. .++.|...+|+| +|++||+.+.||. ++|||..+ .+.+..++..
T Consensus 264 k~~~~f~i~t~-------ksk~~rNPv~~w~~--~~g~in~f~FS~-DG~~LA~VSqDGf-LRvF~fdt-~eLlg~mkSY 331 (636)
T KOG2394|consen 264 KDGDQFAILTS-------KSKKTRNPVARWHI--GEGSINEFAFSP-DGKYLATVSQDGF-LRIFDFDT-QELLGVMKSY 331 (636)
T ss_pred CCCCeeEEeee-------eccccCCccceeEe--ccccccceeEcC-CCceEEEEecCce-EEEeeccH-HHHHHHHHhh
Confidence 3444433221 11111112222222 235899999999 9999999999999 99999987 5566667777
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP 320 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 320 (339)
-+...+++||||| ++|++|++|-.|.||.+.... ..-.-.+|...|+.|+|.|
T Consensus 332 FGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erR------------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 332 FGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERR------------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEEEcCCc-cEEEecCCcceEEEEEeccce------------EEEeccccccceeeEeecc
Confidence 7899999999999 799999999999999999877 1225568999999999983
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=5.5e-15 Score=115.56 Aligned_cols=274 Identities=16% Similarity=0.237 Sum_probs=178.4
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG- 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~- 95 (339)
-+.|.-+.|..+ ..+++++.+ .++.|++|++... +... .+ ...+.++.++.|||+++ .+|.+..
T Consensus 48 ldki~yieW~ad---s~~ilC~~y---k~~~vqvwsl~Qp--ew~c--kI-deg~agls~~~WSPdgr----hiL~tseF 112 (447)
T KOG4497|consen 48 LDKIVYIEWKAD---SCHILCVAY---KDPKVQVWSLVQP--EWYC--KI-DEGQAGLSSISWSPDGR----HILLTSEF 112 (447)
T ss_pred HHHhhheeeecc---ceeeeeeee---ccceEEEEEeecc--eeEE--Ee-ccCCCcceeeeECCCcc----eEeeeecc
Confidence 367888999999 888888876 7889999776544 3433 22 45677899999999994 4444444
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----------------------------
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----------------------------- 145 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------------------------- 145 (339)
+ .|.+|.+.+.+. ..++..+ ..+..++|+| ++++.+.++.-
T Consensus 113 ~lriTVWSL~t~~~---~~~~~pK-----~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 113 DLRITVWSLNTQKG---YLLPHPK-----TNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG 183 (447)
T ss_pred eeEEEEEEecccee---EEecccc-----cCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence 5 999999998752 2222222 4557778887 77776665431
Q ss_pred -------CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcce-----------------
Q 040307 146 -------TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERS----------------- 200 (339)
Q Consensus 146 -------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----------------- 200 (339)
..+.+||---.-.+..+ ...-.+..++|+| +++|+.|+.|+.+|+.+--+-+..
T Consensus 184 ieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~ 262 (447)
T KOG4497|consen 184 IEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL 262 (447)
T ss_pred ceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence 12334442111111122 1234688899996 899999999998887542111000
Q ss_pred ----------------------------------------eeE--E----eCCCCCCCeEEEEEecCCCCeEEEEeeCC-
Q 040307 201 ----------------------------------------TII--Y----ENPVQDCPLLRLEWNKADPRFMATVGMDS- 233 (339)
Q Consensus 201 ----------------------------------------~~~--~----~~~~~~~~v~~~~~~p~~~~~l~~~~~d~- 233 (339)
..+ . ..+.....+.-++|++ +..++++-...-
T Consensus 263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~P 341 (447)
T KOG4497|consen 263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYP 341 (447)
T ss_pred hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCC
Confidence 000 0 0012234566789998 888888754431
Q ss_pred CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI 313 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 313 (339)
+.+-+||++. .+ +..+-....+|....|+|..+ .|+.+.....+++|...... ........-.|
T Consensus 342 nalW~Wdlq~-l~-l~avLiQk~piraf~WdP~~p-rL~vctg~srLY~W~psg~~-------------~V~vP~~GF~i 405 (447)
T KOG4497|consen 342 NALWLWDLQN-LK-LHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSGPR-------------VVGVPKKGFNI 405 (447)
T ss_pred ceEEEEechh-hh-hhhhhhhccceeEEEeCCCCc-eEEEEcCCceEEEEcCCCce-------------EEecCCCCcee
Confidence 2489999986 32 333333467899999999986 77777767789999777644 33333445679
Q ss_pred EEEEecCCCCceEEEecCC
Q 040307 314 NVVRWSPLELDWIAIAFVN 332 (339)
Q Consensus 314 ~~~~~~p~~~~l~~~~~d~ 332 (339)
..+.|..+|..++..+.|.
T Consensus 406 ~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 406 QKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred eeEEecCCCcEEEEEcCCc
Confidence 9999999998877777664
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=4.9e-16 Score=135.08 Aligned_cols=217 Identities=16% Similarity=0.171 Sum_probs=143.6
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+...+.+.+|||+ ++.||+++. .+.+..|++|++.. +.... + ....+....++|+||+ +.|+.+.
T Consensus 202 ~~~~v~~p~wSPD---G~~la~~s~-~~~~~~i~i~dl~t--g~~~~---l-~~~~g~~~~~~wSPDG-----~~La~~~ 266 (429)
T PRK01742 202 SSQPLMSPAWSPD---GSKLAYVSF-ENKKSQLVVHDLRS--GARKV---V-ASFRGHNGAPAFSPDG-----SRLAFAS 266 (429)
T ss_pred CCCccccceEcCC---CCEEEEEEe-cCCCcEEEEEeCCC--CceEE---E-ecCCCccCceeECCCC-----CEEEEEE
Confidence 4567999999999 999999873 11234688866643 33222 1 1222334578999999 6666543
Q ss_pred --C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCe-eeeeeeccCCc
Q 040307 96 --D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREI-LETQLVAHDRE 168 (339)
Q Consensus 96 --~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~-~~~~~~~~~~~ 168 (339)
+ .|.+||+.+++ ...+..+. ..+....|+| +++.|+.++ .++...||+++... ....+ .+..
T Consensus 267 ~~~g~~~Iy~~d~~~~~---~~~lt~~~-----~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 267 SKDGVLNIYVMGANGGT---PSQLTSGA-----GNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred ecCCcEEEEEEECCCCC---eEeeccCC-----CCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence 3 45555665554 23344444 5677899998 888776555 57888888764322 22223 3333
Q ss_pred eeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC-CCCC
Q 040307 169 VYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR-FPTN 246 (339)
Q Consensus 169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~-~~~~ 246 (339)
....|+ +++.|+..+.++ +.+||+.+++.... ... .....+.|+| ++++|+.++.++. ..+|++. ..+.
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~~----~~~~~~~~sP-dG~~i~~~s~~g~-~~~l~~~~~~G~ 406 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SST----FLDESPSISP-NGIMIIYSSTQGL-GKVLQLVSADGR 406 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cCC----CCCCCceECC-CCCEEEEEEcCCC-ceEEEEEECCCC
Confidence 457889 788888887764 66699988764322 211 1235678999 8999999988888 7777653 2356
Q ss_pred ceEEEecCCCCeeEEEeccCC
Q 040307 247 PVVVLSKHEGSVNGISWAPLY 267 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~p~~ 267 (339)
....+..|.+.+..++|+|--
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred ceEEccCCCCCCCCcccCCCC
Confidence 678888888889999999864
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=2e-17 Score=143.40 Aligned_cols=239 Identities=18% Similarity=0.222 Sum_probs=172.3
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|-..|+|+.|... |.++++|+ .|..++||. .++..+.. .. .+|.+.|+.++.+.+. .++|+++
T Consensus 189 H~naVyca~fDrt---g~~Iitgs----dd~lvKiwS--~et~~~lA--s~-rGhs~ditdlavs~~n-----~~iaaaS 251 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRT---GRYIITGS----DDRLVKIWS--METARCLA--SC-RGHSGDITDLAVSSNN-----TMIAAAS 251 (1113)
T ss_pred hhhheeeeeeccc---cceEeecC----ccceeeeee--ccchhhhc--cC-CCCccccchhccchhh-----hhhhhcc
Confidence 5678999999999 99999999 799999966 44444433 33 7999999999999988 7888888
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee---ee-ccCCce
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ---LV-AHDREV 169 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~---~~-~~~~~v 169 (339)
| .|++|.+.++. ++..+.+|+ ++|++++|+| - ++.+.||++++||.+-...+.. +. .....+
T Consensus 252 ~D~vIrvWrl~~~~--pvsvLrght-----gavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 252 NDKVIRVWRLPDGA--PVSVLRGHT-----GAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLV 319 (1113)
T ss_pred cCceEEEEecCCCc--hHHHHhccc-----cceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccce
Confidence 5 89999999998 889999999 9999999999 2 3788999999999871100000 00 001112
Q ss_pred eEEEec-CCcEEEE-------------------------------------EeCCCcEEEEECCCCcceeeEEeCCCCCC
Q 040307 170 YDISWG-GFNVFAS-------------------------------------VSGDCSVRVFDLRDKERSTIIYENPVQDC 211 (339)
Q Consensus 170 ~~~~~~-~~~~l~~-------------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 211 (339)
.++.|. .+.-+++ +-.+-.+.+|++.++..... .. .|..
T Consensus 320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~-l~--ghsd 396 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN-LM--GHSD 396 (1113)
T ss_pred eeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhh-hc--cccc
Confidence 222222 2222222 22334455666666543222 22 2567
Q ss_pred CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+..+.++|.+..+..+++.||. ..|||+-. +.|++........+..-+||++| ..++....-|.++|......+
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-g~pik~y~~gh~kl~d~kFSqdg-ts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDG-TSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCc-eEeeeccc-CCcceeeecccceeeccccCCCC-ceEecCCCCCceEEeccCCCc
Confidence 88899999999999999999999 99999987 55555444335567788999999 588888788899998776554
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.4e-14 Score=125.74 Aligned_cols=232 Identities=13% Similarity=0.098 Sum_probs=149.8
Q ss_pred eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCcc
Q 040307 47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSE 121 (339)
Q Consensus 47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~ 121 (339)
.|.+ ++.++..... + ..+...+...+|+||+ +.|+..+ + .+.+|++.+++.+.+..+.+
T Consensus 180 ~l~~--~d~dg~~~~~---l-t~~~~~~~~p~wSPDG-----~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----- 243 (429)
T PRK03629 180 ELRV--SDYDGYNQFV---V-HRSPQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAVRQVASFPR----- 243 (429)
T ss_pred eEEE--EcCCCCCCEE---e-ecCCCceeeeEEcCCC-----CEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----
Confidence 5666 4444443332 1 4566789999999999 6666532 3 89999998876434433333
Q ss_pred CCCCEEEEEEcCCCCCEEEEE-eCCC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC-Cc--EEEEEC
Q 040307 122 FSSAITSFDWAGFDTRRVATC-SVDT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD-CS--VRVFDL 194 (339)
Q Consensus 122 ~~~~i~~~~~~~~~~~~l~~~-~~d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-~~--i~i~d~ 194 (339)
.+....|+| +++.|+.. +.+| .|++||+++++... +..+...+....|+ +++.|+..+.+ +. |.++|+
T Consensus 244 ---~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 244 ---HNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred ---CcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 334689999 88887765 4444 58899998876543 43445567889999 78877766654 44 445566
Q ss_pred CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEE
Q 040307 195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLC 272 (339)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 272 (339)
.++..... .. .........|+| +|+.|+..+.++. .|.+||+... . ...+.. ........|+||| +.|+
T Consensus 319 ~~g~~~~l-t~---~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~-~~~~~~p~~SpDG-~~i~ 389 (429)
T PRK03629 319 NGGAPQRI-TW---EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTD-TFLDETPSIAPNG-TMVI 389 (429)
T ss_pred CCCCeEEe-ec---CCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCC-C-eEEeCC-CCCCCCceECCCC-CEEE
Confidence 66543222 21 123456789998 8888877655432 4888998763 2 334432 2234578999999 5888
Q ss_pred EEeCCCc---EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 273 SVADDSR---ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 273 ~~~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
.++.++. +.++++.... ...+..|.+.+...+|+|-
T Consensus 390 ~~s~~~~~~~l~~~~~~G~~-------------~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTDGRF-------------KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEcCCCceEEEEEECCCCC-------------eEECccCCCCcCCcccCCC
Confidence 8777664 5666665444 3445567778999999983
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=5.8e-15 Score=117.80 Aligned_cols=244 Identities=13% Similarity=0.129 Sum_probs=180.4
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEe-CC-cEEEEeecCCcceeEE----EeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATS-GD-SLRLWEIHDDRTELKS----LLNSNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~-~~-~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.-...|..+.|.-+++. .++... .+ .+..+.+......... ...... .+|..+... + ..|++|
T Consensus 53 ~~~~ris~l~~~~d~~t---evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~-----~~I~gl~~~--d-g~Litc 121 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGET---EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT-----KSIKGLKLA--D-GTLITC 121 (412)
T ss_pred chhhhhhhheeecCCce---eEeeccccCcccccccccCCcccccccccccccccc-----ccccchhhc--C-CEEEEE
Confidence 34567889999877743 566665 34 7888877776522111 222222 677777764 3 567777
Q ss_pred eCCCeEEEEECCCCe----eeeeeeccCCceeEEEec--CCcEEEEEeCC--CcEEEEECCCCcceeeEEeCCC------
Q 040307 143 SVDTTCVIWDIDREI----LETQLVAHDREVYDISWG--GFNVFASVSGD--CSVRVFDLRDKERSTIIYENPV------ 208 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~------ 208 (339)
-.+|.+.+|..+.+. .+..+..+ ..+..|.-+ ...++++|+.. ..+.+||+...+..-.-...+.
T Consensus 122 ~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 122 VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 889999999987432 33444433 456667666 46788889998 8899999998742111111110
Q ss_pred CCCCeEEEEEecCC--CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 209 QDCPLLRLEWNKAD--PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 209 ~~~~v~~~~~~p~~--~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
-.-.++++.|-| . ...|++++.-+. +++||.+....|+..+.....+++++...|.+ +++++|..-|.+..||++
T Consensus 201 VPvW~tdi~Fl~-g~~~~~fat~T~~hq-vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 201 VPVWITDIRFLE-GSPNYKFATITRYHQ-VRLYDTRHQRRPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred eeeeeccceecC-CCCCceEEEEeccee-EEEecCcccCcceeEeccccCcceeeeecCCC-cEEEEecccchhheeccc
Confidence 123567788886 4 678899888887 99999999889999999889999999999999 699999999999999999
Q ss_pred CCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 287 GPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
... -+. ...+..+.|.++..+|.++.++++|-|..|||+++
T Consensus 278 ~~k------------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 278 GGK------------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred Cce------------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 987 122 24567899999999999998889999999999985
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=1.6e-14 Score=130.55 Aligned_cols=258 Identities=11% Similarity=0.108 Sum_probs=168.8
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA 140 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 140 (339)
..|...|..++.++... .++++|++ +|++|+...-. .+...++.... ..+.++...+ .++.+|
T Consensus 1045 ~Ehs~~v~k~a~s~~~~----s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~-----sr~~~vt~~~-~~~~~A 1114 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHT----SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG-----SRVEKVTMCG-NGDQFA 1114 (1431)
T ss_pred hhccccccceeecCCCC----ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC-----CceEEEEecc-CCCeEE
Confidence 57888888998887764 79999995 99999987532 12222333222 6888898886 899999
Q ss_pred EEeCCCeEEEEECCCCe-------eeeeeecc-CCce-eEEEec--CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCC
Q 040307 141 TCSVDTTCVIWDIDREI-------LETQLVAH-DREV-YDISWG--GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPV 208 (339)
Q Consensus 141 ~~~~d~~v~i~d~~~~~-------~~~~~~~~-~~~v-~~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 208 (339)
.++.||.|++.+++..+ ..+....+ .+.+ ..-+|. ... .++.+..-+.|..||+++....-.....+
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~- 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL- 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-
Confidence 99999999999987621 12222222 2233 333444 344 77888888999999999887444433332
Q ss_pred CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCC--CeEEEEe--CCCcEEEE
Q 040307 209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYG--RRLCSVA--DDSRALIW 283 (339)
Q Consensus 209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~--~~l~~~~--~dg~v~iw 283 (339)
..+.|++++.+| .++.+++|+..|. +.+||+|- +.++.... .+..+++.+..+|..+ ...++++ ..+.|.+|
T Consensus 1194 ~hG~vTSi~idp-~~~WlviGts~G~-l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDP-WCNWLVIGTSRGQ-LVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cccceeEEEecC-CceEEEEecCCce-EEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 347899999998 8889999999998 99999997 55665543 2346788888877643 3454444 56789999
Q ss_pred EecCCCCCCC--C--CCC-CCccccee--eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 284 EVVGPGYRSG--N--GGP-SGDVEPEL--CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 284 d~~~~~~~~~--~--~~~-~~~~~~~~--~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
++.++..+.. . +.+ .....|.. ...+........+...+..+++++.|..||.|+.
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 9998862110 0 000 00000100 0011112223333344456789999999999973
No 225
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.69 E-value=3.1e-12 Score=108.13 Aligned_cols=281 Identities=16% Similarity=0.136 Sum_probs=177.0
Q ss_pred EEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-C---C--cEEEEeecCC--
Q 040307 35 LAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-G---D--SLRLWEIHDD-- 106 (339)
Q Consensus 35 la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-~---~--~i~iw~~~~~-- 106 (339)
+.+|++..+..+.|.+|+++.+++.+..... .........|+++|++ ++|.+. . + .|..|++...
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~--~~~~~~Ps~l~~~~~~-----~~LY~~~e~~~~~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT--VAEGENPSWLAVSPDG-----RRLYVVNEGSGDSGGVSSYRIDPDTG 74 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE--EEESSSECCEEE-TTS-----SEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee--ecCCCCCceEEEEeCC-----CEEEEEEccccCCCCEEEEEECCCcc
Confidence 4566642233489999999888888776333 2345567889999999 555544 2 2 8888888875
Q ss_pred cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCC-Ceeeee---ee----------ccCCceeE
Q 040307 107 RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDR-EILETQ---LV----------AHDREVYD 171 (339)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~-~~~~~~---~~----------~~~~~v~~ 171 (339)
+...+....... .....++++| ++++|+++.. +|.|.++++.. +..... +. .......+
T Consensus 75 ~L~~~~~~~~~g-----~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 75 TLTLLNSVPSGG-----SSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEEEESS-----SCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred eeEEeeeeccCC-----CCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 444444444222 4556799998 8888888764 89999999976 332221 11 11245678
Q ss_pred EEec-CCcEEEEEe-CCCcEEEEECCCCcc-eee--EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 172 ISWG-GFNVFASVS-GDCSVRVFDLRDKER-STI--IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 172 ~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~-~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
+.++ +++++++.. ....|.+|++..... ... .... ......+.++|+| +++++++..+....|.++++.....
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC
Confidence 9999 677766654 345799999987652 211 1122 2346789999998 8888877776666699999883222
Q ss_pred ceE---EEecC------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEEE
Q 040307 247 PVV---VLSKH------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINVV 316 (339)
Q Consensus 247 ~~~---~~~~~------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~ 316 (339)
.+. ..... ......|+++|+|..+.++...++.|.+|++.... +.+....... .......+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~---------g~l~~~~~~~~~G~~Pr~~ 297 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT---------GTLTLVQTVPTGGKFPRHF 297 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT---------TTEEEEEEEEESSSSEEEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC---------CceEEEEEEeCCCCCccEE
Confidence 222 22111 12577899999995444445577899999995432 0122222222 24458999
Q ss_pred EecCCCCceEEEe-cCCeEEEEeC
Q 040307 317 RWSPLELDWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 317 ~~~p~~~~l~~~~-~d~~v~~w~v 339 (339)
+++|+|++|+++. .++.|.+|++
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEecCCCeEEEEEE
Confidence 9999999888766 6778998864
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.6e-14 Score=122.65 Aligned_cols=237 Identities=14% Similarity=0.167 Sum_probs=144.1
Q ss_pred CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCc
Q 040307 46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTS 120 (339)
Q Consensus 46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~ 120 (339)
+.-.||-++.++..... ...+...+.+.+|+|++ +.|+..+ . .|.+||+.+++...+..+.
T Consensus 174 ~~~~L~~~D~dG~~~~~----l~~~~~~v~~p~wSPDG-----~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~----- 239 (427)
T PRK02889 174 NRYQLQISDADGQNAQS----ALSSPEPIISPAWSPDG-----TKLAYVSFESKKPVVYVHDLATGRRRVVANFK----- 239 (427)
T ss_pred CccEEEEECCCCCCceE----eccCCCCcccceEcCCC-----CEEEEEEccCCCcEEEEEECCCCCEEEeecCC-----
Confidence 33445556655444332 24667789999999999 6776654 2 6999999888633322222
Q ss_pred cCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEE--CCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CCcEEEEEC-
Q 040307 121 EFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWD--IDREILETQLVAHDREVYDISWG-GFNVFASVSG-DCSVRVFDL- 194 (339)
Q Consensus 121 ~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d--~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~- 194 (339)
..+....|+| +++.|+ +.+.+|...||. +..+. ...+..+........|+ +++.|+..+. ++...+|.+
T Consensus 240 ---g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 240 ---GSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred ---CCccceEECC-CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 3456889998 888776 456777766654 44443 44555555556778899 7887776554 456666655
Q ss_pred -CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeE
Q 040307 195 -RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRL 271 (339)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 271 (339)
.++........ .......+|+| +|++|+..+.++. .|.+||+... . ...+.. ........|+|++. .|
T Consensus 315 ~~~g~~~~lt~~----g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~-~~~~~~p~~spdg~-~l 385 (427)
T PRK02889 315 ASGGAAQRVTFT----GSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATG-Q-VTALTD-TTRDESPSFAPNGR-YI 385 (427)
T ss_pred CCCCceEEEecC----CCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCC-C-eEEccC-CCCccCceECCCCC-EE
Confidence 44332222222 12344678998 8888887665542 4999998763 3 233332 23456789999995 66
Q ss_pred EEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 272 CSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 272 ~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
+.++ ..|.-.++-+.... ........+.+.+...+|+|-
T Consensus 386 ~~~~~~~g~~~l~~~~~~g-----------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 386 LYATQQGGRSVLAAVSSDG-----------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEecCCCEEEEEEECCC-----------CceEEeecCCCCCCCCccCCC
Confidence 5555 44443344333222 012233345667888899884
No 227
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=2.2e-15 Score=129.42 Aligned_cols=302 Identities=13% Similarity=0.167 Sum_probs=213.0
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC--CCCceEEEEcCCCCCCCC
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH--PYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~~~ 88 (339)
-..+....++.++..+|. |+-+|.++ .-.+.+.+++.....+.. ..| .-.|-.+.|+|... .|
T Consensus 18 slsl~v~~~~~a~si~p~---grdi~lAs-----r~gl~i~dld~p~~ppr~-----l~h~tpw~vad~qws~h~a--~~ 82 (1081)
T KOG0309|consen 18 SLSLKVDGGFNAVSINPS---GRDIVLAS-----RQGLYIIDLDDPFTPPRW-----LHHITPWQVADVQWSPHPA--KP 82 (1081)
T ss_pred eeEEEecCcccceeeccc---cchhhhhh-----hcCeEEEeccCCCCCcee-----eeccCcchhcceecccCCC--Cc
Confidence 344556789999999999 99999998 345566566655444443 233 34578889998764 23
Q ss_pred CeEEEeCC-cEEEEeecCCcce-eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeecc
Q 040307 89 DIVATSGD-SLRLWEIHDDRTE-LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAH 165 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~ 165 (339)
..+++.+. ...+|++...... ....+.+|. .+|+++.|+|+....+++++.|-.+..||+++.. ++.....-
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghs-----raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS-----RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEEEEecCc-----cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 55666665 8889998765422 334566777 9999999999999999999999999999998865 45555444
Q ss_pred CCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 166 DREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 166 ~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
......++|+ +++.+++ +..+.|++||++.+..+...... |...+..+.|+......+.+.+.|++ |++||..+
T Consensus 158 ~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~k 233 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSK 233 (1081)
T ss_pred cccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhhhhhcccCCCCc-eeeecccc
Confidence 5567889999 5666655 45678999999999877666655 66788888988656667889999999 99999987
Q ss_pred CCCceEEEecCCCCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCC
Q 040307 244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPL 321 (339)
Q Consensus 244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~ 321 (339)
..+.-........+|+.-.+-|-|+.+++.-.. +..+.+++-+.... +-.......|+ ...+|...|..+.|-..
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~---e~n~~~~~~pVh~F~GH~D~V~eFlWR~r 310 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL---EWNVFDLNTPVHTFVGHDDVVLEFLWRKR 310 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhh---hhccccCCcceeeecCcchHHHHHhhhhc
Confidence 544444444456788888888987544443322 22444444433220 00000111243 66689999999988765
Q ss_pred CC----------ceEEEecCCeEEEEeC
Q 040307 322 EL----------DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 322 ~~----------~l~~~~~d~~v~~w~v 339 (339)
+. .|++-+.|..+|+|.|
T Consensus 311 ~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 311 KECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred ccccCCCCccceeEEEeecCCceEeeec
Confidence 43 3889999999999975
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.1e-13 Score=120.79 Aligned_cols=231 Identities=13% Similarity=0.150 Sum_probs=147.4
Q ss_pred eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCcc
Q 040307 47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSE 121 (339)
Q Consensus 47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~ 121 (339)
.|.+ ++.++..... ...+...+.+.+|+||+ +.|+..+ + .|.+|++.+++.. .+..+.
T Consensus 183 ~l~~--~d~dg~~~~~----lt~~~~~v~~p~wSpDG-----~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~--- 245 (435)
T PRK05137 183 RLAI--MDQDGANVRY----LTDGSSLVLTPRFSPNR-----QEITYMSYANGRPRVYLLDLETGQRE---LVGNFP--- 245 (435)
T ss_pred EEEE--ECCCCCCcEE----EecCCCCeEeeEECCCC-----CEEEEEEecCCCCEEEEEECCCCcEE---EeecCC---
Confidence 4555 5555444432 24677889999999999 6666543 3 8999999887632 233333
Q ss_pred CCCCEEEEEEcCCCCCEEE-EEeCCCe--EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CC--cEEEEEC
Q 040307 122 FSSAITSFDWAGFDTRRVA-TCSVDTT--CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DC--SVRVFDL 194 (339)
Q Consensus 122 ~~~~i~~~~~~~~~~~~l~-~~~~d~~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~i~d~ 194 (339)
..+...+|+| +++.|+ +.+.++. |++||+.+++. ..+..+........|+ +++.|+..+. ++ .|+++|+
T Consensus 246 --g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 246 --GMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred --CcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 4667889998 887765 5555554 77789887764 4455566667788999 7887776663 33 6888888
Q ss_pred CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEE
Q 040307 195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLC 272 (339)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 272 (339)
..+..... ... ...+....|+| +|+.|+....++. .|.+||+.. + ....+. ....+..+.|+|+|. .|+
T Consensus 322 ~g~~~~~l-t~~---~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG~-~i~ 392 (435)
T PRK05137 322 DGSNPRRI-SFG---GGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNGR-VIM 392 (435)
T ss_pred CCCCeEEe-ecC---CCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCCC-EEE
Confidence 76653322 221 24566788999 8888877665432 488888754 2 233333 233577899999995 665
Q ss_pred EEeC-CC-----cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 273 SVAD-DS-----RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 273 ~~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
..+. .+ .+.++|+.... ...+. ..+.+...+|+|-
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g~~-------------~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTGRN-------------EREVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEEccCCCCCcceEEEEECCCCc-------------eEEcc-CCCCccCcccCCC
Confidence 5443 22 46666665544 22222 2345677888874
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.1e-13 Score=120.74 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=145.9
Q ss_pred eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCcc
Q 040307 47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSE 121 (339)
Q Consensus 47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~ 121 (339)
.|.+||. ++..... + ..+...+.+.+|+|++ +.|+..+ + .|.+|++.+++...+..+ .
T Consensus 185 ~l~i~D~--~g~~~~~---l-t~~~~~v~~p~wSpDg-----~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---~--- 247 (433)
T PRK04922 185 ALQVADS--DGYNPQT---I-LRSAEPILSPAWSPDG-----KKLAYVSFERGRSAIYVQDLATGQRELVASF---R--- 247 (433)
T ss_pred EEEEECC--CCCCceE---e-ecCCCccccccCCCCC-----CEEEEEecCCCCcEEEEEECCCCCEEEeccC---C---
Confidence 4666444 4433332 2 4567789999999999 7777654 2 799999988763333222 2
Q ss_pred CCCCEEEEEEcCCCCCEEE-EEeCCC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CCc--EEEEEC
Q 040307 122 FSSAITSFDWAGFDTRRVA-TCSVDT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DCS--VRVFDL 194 (339)
Q Consensus 122 ~~~~i~~~~~~~~~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~--i~i~d~ 194 (339)
.......|+| +++.|+ +.+.+| .|++||+.+++. ..+..+.......+|+ +++.|+..+. ++. |+++|+
T Consensus 248 --g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 248 --GINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred --CCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 3345789998 887665 445555 599999988764 4455555556778999 7887776653 444 666677
Q ss_pred CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEE
Q 040307 195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLC 272 (339)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 272 (339)
.+++....... ......++|+| +|++|+..+.++. .|.+||+.. ++. ..+. +........|+|+|. +|+
T Consensus 324 ~~g~~~~lt~~----g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~-g~~-~~Lt-~~~~~~~p~~spdG~-~i~ 394 (433)
T PRK04922 324 SGGSAERLTFQ----GNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST-GSV-RTLT-PGSLDESPSFAPNGS-MVL 394 (433)
T ss_pred CCCCeEEeecC----CCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC-CCe-EECC-CCCCCCCceECCCCC-EEE
Confidence 66553322222 23345789998 8888877654432 489999875 332 3343 333456789999994 665
Q ss_pred EEeC-CC--cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC
Q 040307 273 SVAD-DS--RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP 320 (339)
Q Consensus 273 ~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 320 (339)
..+. .+ .|.++++.... ...+..+.+.+...+|+|
T Consensus 395 ~~s~~~g~~~L~~~~~~g~~-------------~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 395 YATREGGRGVLAAVSTDGRV-------------RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEecCCceEEEEEECCCCc-------------eEEcccCCCCCCCCccCC
Confidence 5554 33 46666664433 233334456678888887
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=6.2e-14 Score=121.70 Aligned_cols=218 Identities=14% Similarity=0.168 Sum_probs=143.7
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS- 94 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~- 94 (339)
....+.+.+|||| |+.||+.+.. ..+..|.+|++. +++... .....+.+..+.|+||+ +.|+..
T Consensus 197 ~~~~~~~p~wSPD---G~~la~~s~~-~g~~~i~i~dl~--~G~~~~----l~~~~~~~~~~~~SPDG-----~~La~~~ 261 (429)
T PRK03629 197 SPQPLMSPAWSPD---GSKLAYVTFE-SGRSALVIQTLA--NGAVRQ----VASFPRHNGAPAFSPDG-----SKLAFAL 261 (429)
T ss_pred CCCceeeeEEcCC---CCEEEEEEec-CCCcEEEEEECC--CCCeEE----ccCCCCCcCCeEECCCC-----CEEEEEE
Confidence 4467899999999 9999987631 124567776654 333322 12334445678999999 666543
Q ss_pred C--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeccCC
Q 040307 95 G--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-T--TCVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 95 ~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~ 167 (339)
. + .|++||+++++ .. .+..+. ..+....|+| +++.|+..+.+ + .|+++|+.+++. ..+.....
T Consensus 262 ~~~g~~~I~~~d~~tg~--~~-~lt~~~-----~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~ 331 (429)
T PRK03629 262 SKTGSLNLYVMDLASGQ--IR-QVTDGR-----SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS 331 (429)
T ss_pred cCCCCcEEEEEECCCCC--EE-EccCCC-----CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC
Confidence 2 2 79999998875 32 232222 4567899998 89988777654 3 455557766643 33433444
Q ss_pred ceeEEEec-CCcEEEEEeCC---CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEec
Q 040307 168 EVYDISWG-GFNVFASVSGD---CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDI 241 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~ 241 (339)
......|+ +++.|+..+.+ ..|.+||+.++.... +... .......|+| +|+.|+..+.++. .+.++++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC----CCCCCceECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 55678899 78888776544 358889998776332 2221 1234678998 8998888887765 3566676
Q ss_pred CCCCCceEEEecCCCCeeEEEeccC
Q 040307 242 RFPTNPVVVLSKHEGSVNGISWAPL 266 (339)
Q Consensus 242 ~~~~~~~~~~~~~~~~v~~~~~~p~ 266 (339)
. +.....+..|.+.+...+|+|-
T Consensus 406 ~--G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 406 D--GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C--CCCeEECccCCCCcCCcccCCC
Confidence 4 4456777788888999999984
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=1.1e-12 Score=110.88 Aligned_cols=266 Identities=13% Similarity=0.106 Sum_probs=158.6
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCc-eEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcc
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTP-TNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRT 108 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~ 108 (339)
++++++... .+|.|.+ ++..+.+... .+ .....+ ..+.|+||+ +++.+++ + .|.++|+.+.+
T Consensus 5 ~~l~~V~~~---~~~~v~v--iD~~t~~~~~--~i--~~~~~~h~~~~~s~Dg-----r~~yv~~rdg~vsviD~~~~~- 69 (369)
T PF02239_consen 5 GNLFYVVER---GSGSVAV--IDGATNKVVA--RI--PTGGAPHAGLKFSPDG-----RYLYVANRDGTVSVIDLATGK- 69 (369)
T ss_dssp GGEEEEEEG---GGTEEEE--EETTT-SEEE--EE--E-STTEEEEEE-TT-S-----SEEEEEETTSEEEEEETTSSS-
T ss_pred ccEEEEEec---CCCEEEE--EECCCCeEEE--EE--cCCCCceeEEEecCCC-----CEEEEEcCCCeEEEEECCccc-
Confidence 455554442 5899999 5555555554 33 322333 457899999 6555554 5 99999999998
Q ss_pred eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecc-------CCceeEEEec-CCc-
Q 040307 109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREILETQLVAH-------DREVYDISWG-GFN- 178 (339)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~-~~~- 178 (339)
.+.+++.. ....++++++ ++++++++. ..+.+.++|.++.+.++.+... ...+..+..+ ...
T Consensus 70 -~v~~i~~G------~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 70 -VVATIKVG------GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp -EEEEEE-S------SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred -EEEEEecC------CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 67666654 3567899998 999888765 6899999999999988877532 2345666666 444
Q ss_pred EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-------------
Q 040307 179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT------------- 245 (339)
Q Consensus 179 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~------------- 245 (339)
++++.-..+.|.+.|....+........ .........|+| ++++++++......|.++|.....
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~ 218 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHP 218 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEE
T ss_pred EEEEEccCCeEEEEEeccccccceeeec--ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccc
Confidence 4444444588888898877544332222 235678899998 888877765544448888876532
Q ss_pred -----------------------------------------CceEEEecCCCCeeEEEeccCCCCeEEEE----eCCCcE
Q 040307 246 -----------------------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCSV----ADDSRA 280 (339)
Q Consensus 246 -----------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----~~dg~v 280 (339)
+.+.++...... .-+.-+|++ +++.+. ...+.|
T Consensus 219 ~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 219 GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTV 296 (369)
T ss_dssp TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-E
T ss_pred cccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceE
Confidence 111222222223 456778998 477776 455899
Q ss_pred EEEEecCCCCCCCCCCCCCcccceeeec--ccceeEEEEecCCCCceEEEe-cCC-eEEEEe
Q 040307 281 LIWEVVGPGYRSGNGGPSGDVEPELCYQ--SMAEINVVRWSPLELDWIAIA-FVN-KLQLLK 338 (339)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~-~d~-~v~~w~ 338 (339)
.++|.++.+ ...... ....+..+.|+++|+++..+. .++ .|.+|+
T Consensus 297 ~viD~~tl~-------------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 297 QVIDKKTLK-------------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EEEECCGTE-------------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred EEEECcCcc-------------eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 999999976 333322 233599999999999866443 333 798886
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.7e-15 Score=122.11 Aligned_cols=257 Identities=14% Similarity=0.152 Sum_probs=183.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEe-ecCCCccCCCCEEEEEEcCC-CCCEEEEEe
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLL-NSNKTSEFSSAITSFDWAGF-DTRRVATCS 143 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~ 143 (339)
..|.+.|+.|.|+..+ .+|++|+| .|.+||..... ....+ .+|. ..|....|-|. +..-|++++
T Consensus 139 ~~H~GcVntV~FN~~G-----d~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~-----~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRG-----DVLASGSDDLQVVVWDWVSGS--PKLSFESGHC-----NNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred cCCCCccceeeecccC-----ceeeccCccceEEeehhhccC--cccccccccc-----cchhhhhccCCCCCcCceecc
Confidence 5799999999999999 99999996 99999998876 33333 3555 67777778775 346799999
Q ss_pred CCCeEEEEECCC-Cee--eeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC---CeEE
Q 040307 144 VDTTCVIWDIDR-EIL--ETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC---PLLR 215 (339)
Q Consensus 144 ~d~~v~i~d~~~-~~~--~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~v~~ 215 (339)
.||.|++=.+.. +.. ...+..|.++|.-++.- ....|.+++.|+.+.-+|++.......+.....+.. ...+
T Consensus 207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 207 RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT 286 (559)
T ss_pred ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence 999999876533 322 33456799999999988 377899999999999999998875555544333333 5788
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-----eEEEec------CCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-----VVVLSK------HEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-----~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
++.+|.+...+++++.|.. +++||.+...+. +.++.. ....|++++|+.++..+| +.-.|-.|+++.
T Consensus 287 Ia~~P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~IYLF~ 364 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDEDIYLFN 364 (559)
T ss_pred EecCCCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee-eeecccceEEec
Confidence 9999988889999999999 999998863321 222221 234689999998875444 444577889985
Q ss_pred ecCCCC-CCCCCCCCCcccceeeeccc--ceeEEEEe-cCCCCceEEEecCCeEEEEe
Q 040307 285 VVGPGY-RSGNGGPSGDVEPELCYQSM--AEINVVRW-SPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 285 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~i~~~~~-~p~~~~l~~~~~d~~v~~w~ 338 (339)
-..... .|.-..+.....+....+|. ..|..+-| -|...++++++.-|.|.||+
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 444431 12211222222233345663 34777775 46777888888999999997
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=1.7e-14 Score=110.82 Aligned_cols=131 Identities=18% Similarity=0.311 Sum_probs=92.6
Q ss_pred CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE--eeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV--GMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA 264 (339)
Q Consensus 187 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 264 (339)
+...+|.++............ ..++|.+++|+| +++.+++. ..+.. +.+||++ .+++..+. ...++.+.|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP-~g~~favi~g~~~~~-v~lyd~~--~~~i~~~~--~~~~n~i~ws 109 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELK-KEGPIHDVAWSP-NGNEFAVIYGSMPAK-VTLYDVK--GKKIFSFG--TQPRNTISWS 109 (194)
T ss_pred eeEEEEEEecCCCccceeecc-CCCceEEEEECc-CCCEEEEEEccCCcc-cEEEcCc--ccEeEeec--CCCceEEEEC
Confidence 345666665544333333321 235799999999 66665443 34555 9999996 45555554 5678899999
Q ss_pred cCCCCeEEEEeC---CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe------cCCeEE
Q 040307 265 PLYGRRLCSVAD---DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA------FVNKLQ 335 (339)
Q Consensus 265 p~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~------~d~~v~ 335 (339)
|+| ++|++++. .|.|.+||.+..+ ++....|. .++.++|+|+|++++++. .|+.++
T Consensus 110 P~G-~~l~~~g~~n~~G~l~~wd~~~~~-------------~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~ 174 (194)
T PF08662_consen 110 PDG-RFLVLAGFGNLNGDLEFWDVRKKK-------------KISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFK 174 (194)
T ss_pred CCC-CEEEEEEccCCCcEEEEEECCCCE-------------EeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEE
Confidence 999 58888774 4679999999766 44444444 478999999999988754 389999
Q ss_pred EEeC
Q 040307 336 LLKV 339 (339)
Q Consensus 336 ~w~v 339 (339)
||+.
T Consensus 175 Iw~~ 178 (194)
T PF08662_consen 175 IWSF 178 (194)
T ss_pred EEEe
Confidence 9974
No 234
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.66 E-value=2.2e-14 Score=110.49 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=168.5
Q ss_pred CCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCC-CCceEEEEcCCCCCCCCCeEEEe-
Q 040307 18 WPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP-YTPTNIAFFPSEETLNPDIVATS- 94 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~la~~- 94 (339)
..+..+.|.-...++. .|+-+. ..|.|.+|..+.........+.-...-. ....++.|++.+ .-++++
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~----a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~-----~~i~vs~ 140 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAH----ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG-----TKIFVSD 140 (339)
T ss_pred cccceeeeeeccCCccceeeecc----ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC-----ceEEEEc
Confidence 4567777775444455 556666 6899999877654433322111100111 124678899988 445544
Q ss_pred CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeee-eeccCCceeE
Q 040307 95 GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQ-LVAHDREVYD 171 (339)
Q Consensus 95 ~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~-~~~~~~~v~~ 171 (339)
++ .+.+-+......+..+..+.|. -++....|+..+.+++.+|+.|+.+..||++..+ .+.. .+-|...|.+
T Consensus 141 s~G~~~~v~~t~~~le~vq~wk~He-----~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~S 215 (339)
T KOG0280|consen 141 SRGSISGVYETEMVLEKVQTWKVHE-----FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVS 215 (339)
T ss_pred CCCcEEEEecceeeeeecccccccc-----eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEE
Confidence 44 6665555454444556788887 7888899987788999999999999999998433 3322 4568889999
Q ss_pred EEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC---
Q 040307 172 ISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN--- 246 (339)
Q Consensus 172 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~--- 246 (339)
+.-+ .+.++++|+.|-.|++||.|+..++..-.. -.+.|..+.++|.....++.+..-++ .+|-++.....
T Consensus 216 I~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~ 291 (339)
T KOG0280|consen 216 IYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQ 291 (339)
T ss_pred EecCCCCCceEEEeccccceeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchh
Confidence 9888 378999999999999999997664433222 24789999999965544445455555 78888765332
Q ss_pred -ceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEE-EEEecCC
Q 040307 247 -PVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRAL-IWEVVGP 288 (339)
Q Consensus 247 -~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~-iwd~~~~ 288 (339)
.....+.|..-++.-.|.... .+|+|++ .|+.++ +|-.-+.
T Consensus 292 ~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 292 IVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeeeccccccceeecccccccc-ceeeeeeccccceeeeeeeccC
Confidence 233455677777778886554 4788877 576644 7754443
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=8.5e-14 Score=120.97 Aligned_cols=205 Identities=9% Similarity=0.057 Sum_probs=129.5
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---TTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
.|.++|.+... ...+..+. ..+.+.+|+| +++.|+..+.+ ..|.+||+.+++... +....+.+....
T Consensus 177 ~L~~~D~dG~~---~~~l~~~~-----~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~ 246 (427)
T PRK02889 177 QLQISDADGQN---AQSALSSP-----EPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPA 246 (427)
T ss_pred EEEEECCCCCC---ceEeccCC-----CCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceE
Confidence 67777765443 22333444 6788999999 99988877643 459999998886433 333445567889
Q ss_pred ec-CCcEEE-EEeCCCcEEEEEC--CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEecCCCCCce
Q 040307 174 WG-GFNVFA-SVSGDCSVRVFDL--RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDIRFPTNPV 248 (339)
Q Consensus 174 ~~-~~~~l~-~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~~~~~~~~ 248 (339)
|+ +++.|+ +.+.++...+|.+ ..+. ...+.. +........|+| +|+.|+..+.. +. ..+|.+.......
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~---~~~~~~~~~wSp-DG~~l~f~s~~~g~-~~Iy~~~~~~g~~ 320 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ---SSGIDTEPFFSP-DGRSIYFTSDRGGA-PQIYRMPASGGAA 320 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC---CCCCCcCeEEcC-CCCEEEEEecCCCC-cEEEEEECCCCce
Confidence 99 677665 5677777666654 4433 222211 233456788998 88877766553 44 6666554322223
Q ss_pred EEEecCCCCeeEEEeccCCCCeEEEEeCCC---cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307 249 VVLSKHEGSVNGISWAPLYGRRLCSVADDS---RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW 325 (339)
Q Consensus 249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 325 (339)
..+..+.......+|+|+| ++|+..+.++ .|.+||+..+. ...... ........|+|+++.+
T Consensus 321 ~~lt~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~-------------~~~lt~-~~~~~~p~~spdg~~l 385 (427)
T PRK02889 321 QRVTFTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQ-------------VTALTD-TTRDESPSFAPNGRYI 385 (427)
T ss_pred EEEecCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCC-------------eEEccC-CCCccCceECCCCCEE
Confidence 3333333445578999999 5777666544 59999988766 222222 2234678999999988
Q ss_pred EEEecCC
Q 040307 326 IAIAFVN 332 (339)
Q Consensus 326 ~~~~~d~ 332 (339)
+.++.++
T Consensus 386 ~~~~~~~ 392 (427)
T PRK02889 386 LYATQQG 392 (427)
T ss_pred EEEEecC
Confidence 7666433
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4e-13 Score=112.24 Aligned_cols=284 Identities=14% Similarity=0.180 Sum_probs=174.9
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE 83 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 83 (339)
.+.+.... .++++.|||. +.+|.+=-. .....-.+.+|+... ..... .+....+.. ++..|++|.
T Consensus 67 ~~lt~~~~-~~~~L~fSP~---g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s--~~q~k~Q~~-W~~qfs~dE 137 (566)
T KOG2315|consen 67 VVLCVELK-KTYDLLFSPK---GNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQRS--QIQKKMQNG-WVPQFSIDE 137 (566)
T ss_pred EEEEeccc-eeeeeeeccc---ccccccccccccccCCCCCCCceeeeeecc--ceehh--heehhhhcC-cccccccch
Confidence 34444444 7889999999 888876321 111134567866554 22221 111223333 689999998
Q ss_pred CCCCCCeEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEE-----EeCCCeEEEEECCCC
Q 040307 84 ETLNPDIVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVAT-----CSVDTTCVIWDIDRE 156 (339)
Q Consensus 84 ~~~~~~~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~d~~v~i~d~~~~ 156 (339)
.+.|--. +.+++|+..+.+ .....+.. ..|+.+.++|. ....+|+ .+.-+.|+||.....
T Consensus 138 -----sl~arlv~nev~f~~~~~f~-~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 138 -----SLAARLVSNEVQFYDLGSFK-TIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred -----hhhhhhhcceEEEEecCCcc-ceeeeeec-------cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 5555443 499999998754 23334433 67999999984 2334443 455678999987632
Q ss_pred eeeeee---eccCCceeEEEec-CC-cEEEEEe--CC---------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307 157 ILETQL---VAHDREVYDISWG-GF-NVFASVS--GD---------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK 220 (339)
Q Consensus 157 ~~~~~~---~~~~~~v~~~~~~-~~-~~l~~~~--~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p 220 (339)
..-..+ .-....-..+.|+ -+ .+|+.++ -| .++++.++........+. ..++|.++.|+|
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~----k~GPVhdv~W~~ 280 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL----KEGPVHDVTWSP 280 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC----CCCCceEEEECC
Confidence 211111 0111222356677 22 2333322 22 468888887433322222 358999999999
Q ss_pred CCCC-eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC---CCcEEEEEecCCCCCCCCCC
Q 040307 221 ADPR-FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD---DSRALIWEVVGPGYRSGNGG 296 (339)
Q Consensus 221 ~~~~-~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~ 296 (339)
+++ +-++-+.--..+.|||++ +.++..+. .++=+++-|+|.| ++|+.++- .|.+-|||+.+.+
T Consensus 281 -s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K------- 347 (566)
T KOG2315|consen 281 -SGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK------- 347 (566)
T ss_pred -CCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh-------
Confidence 554 444444444449999998 45665554 6778899999999 57777664 4899999999966
Q ss_pred CCCcccceeeecccceeEEEEecCCCCceEEEe-c-----CCeEEEEeC
Q 040307 297 PSGDVEPELCYQSMAEINVVRWSPLELDWIAIA-F-----VNKLQLLKV 339 (339)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~-----d~~v~~w~v 339 (339)
.+... ....-+-+.|+|||++++++. . |+.++||+.
T Consensus 348 ------~i~~~-~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 348 ------LIAKF-KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred ------hcccc-ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 23222 223456789999999988654 2 899999974
No 237
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.3e-11 Score=98.46 Aligned_cols=283 Identities=14% Similarity=0.120 Sum_probs=185.8
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC---C--cEEEEeecC--
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG---D--SLRLWEIHD-- 105 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---~--~i~iw~~~~-- 105 (339)
..+.+|++....+..|++|+++...++... .........++-|+|+|+. +.|-++. + .|.-|.++.
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~--~~~v~~~~nptyl~~~~~~-----~~LY~v~~~~~~ggvaay~iD~~~ 75 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSL--LQLVAELGNPTYLAVNPDQ-----RHLYVVNEPGEEGGVAAYRIDPDD 75 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccch--hhhccccCCCceEEECCCC-----CEEEEEEecCCcCcEEEEEEcCCC
Confidence 356667764445789999999977766655 2234677889999999999 6666653 2 677777765
Q ss_pred CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCC-Ceeee--eeeccCCc----------eeE
Q 040307 106 DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDR-EILET--QLVAHDRE----------VYD 171 (339)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~-~~~~~--~~~~~~~~----------v~~ 171 (339)
++...+....... .+-+.+++++ ++++++++.. .|.|.++-++. |.... ....|.+. +..
T Consensus 76 G~Lt~ln~~~~~g-----~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 76 GRLTFLNRQTLPG-----SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred CeEEEeeccccCC-----CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 4433332222211 3447899997 8888888765 57899999865 33211 12234444 777
Q ss_pred EEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 172 ISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 172 ~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
..+. ++++|++... --.|.+|++..++........-......+.|.|+| ++++..+.++=.++|.+|........+.
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 7888 5778777753 24699999997763322111112346678999999 8888877666555599999887433344
Q ss_pred EEecC---------CCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEe
Q 040307 250 VLSKH---------EGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRW 318 (339)
Q Consensus 250 ~~~~~---------~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 318 (339)
.++.+ ......|..+|+| ++|.++. ....|.+|.+.... +.+...... .+......+.+
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~---------g~L~~~~~~~teg~~PR~F~i 298 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDG---------GKLELVGITPTEGQFPRDFNI 298 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCC---------CEEEEEEEeccCCcCCcccee
Confidence 44332 3467789999999 4766655 44589999988765 011122222 23444789999
Q ss_pred cCCCCceEEEec-CCeEEEEeC
Q 040307 319 SPLELDWIAIAF-VNKLQLLKV 339 (339)
Q Consensus 319 ~p~~~~l~~~~~-d~~v~~w~v 339 (339)
+|++++|+++.. +..|.+|.+
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEE
Confidence 999999888874 455887753
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4.1e-13 Score=117.24 Aligned_cols=202 Identities=10% Similarity=0.097 Sum_probs=134.0
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
.|.++|.+... ...+..+. ..+...+|+| +++.|+..+. +..|++||+.+++. ..+..+.+.+...+
T Consensus 183 ~l~~~d~dg~~---~~~lt~~~-----~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~ 252 (435)
T PRK05137 183 RLAIMDQDGAN---VRYLTDGS-----SLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPR 252 (435)
T ss_pred EEEEECCCCCC---cEEEecCC-----CCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcE
Confidence 78888876553 33444554 6899999999 8998888764 46899999988764 34445666778899
Q ss_pred ec-CCcEEE-EEeCCCc--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CC-eEEEEecCCCCCc
Q 040307 174 WG-GFNVFA-SVSGDCS--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SN-KVVVLDIRFPTNP 247 (339)
Q Consensus 174 ~~-~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~-~i~i~d~~~~~~~ 247 (339)
|+ +++.|+ +.+.++. |++||+.++.... +.. +........|+| +++.|+..+.. +. +|+++|+.. + .
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~---~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g-~-~ 325 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTD---SPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG-S-N 325 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccC---CCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC-C-C
Confidence 99 677664 5555555 7777888765322 221 234556789998 78877776643 32 477888754 2 3
Q ss_pred eEEEecCCCCeeEEEeccCCCCeEEEEeCC-C--cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307 248 VVVLSKHEGSVNGISWAPLYGRRLCSVADD-S--RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324 (339)
Q Consensus 248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 324 (339)
...+..+...+....|+|+|. .|+..+.+ + .|.+||+.... .. .......+....|+|+|+.
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~-------------~~-~lt~~~~~~~p~~spDG~~ 390 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG-------------ER-ILTSGFLVEGPTWAPNGRV 390 (435)
T ss_pred eEEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc-------------eE-eccCCCCCCCCeECCCCCE
Confidence 445554455677889999994 77665533 3 57777765443 11 1122234678999999998
Q ss_pred eEEEec
Q 040307 325 WIAIAF 330 (339)
Q Consensus 325 l~~~~~ 330 (339)
++..+.
T Consensus 391 i~~~~~ 396 (435)
T PRK05137 391 IMFFRQ 396 (435)
T ss_pred EEEEEc
Confidence 765443
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2e-13 Score=118.99 Aligned_cols=217 Identities=16% Similarity=0.135 Sum_probs=139.8
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE-Ee
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA-TS 94 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la-~~ 94 (339)
+...+.+.+|+|+ ++.|++.+.. .....|.+|+++ ++.... + ....+...+++|+|++ +.|+ +.
T Consensus 202 ~~~~v~~p~wSpD---g~~la~~s~~-~~~~~l~~~dl~--~g~~~~---l-~~~~g~~~~~~~SpDG-----~~l~~~~ 266 (433)
T PRK04922 202 SAEPILSPAWSPD---GKKLAYVSFE-RGRSAIYVQDLA--TGQREL---V-ASFRGINGAPSFSPDG-----RRLALTL 266 (433)
T ss_pred CCCccccccCCCC---CCEEEEEecC-CCCcEEEEEECC--CCCEEE---e-ccCCCCccCceECCCC-----CEEEEEE
Confidence 4567889999999 9999988731 123457776654 333322 1 2334455688999999 5544 43
Q ss_pred C--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCe--EEEEECCCCeeeeeeeccCC
Q 040307 95 G--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTT--CVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 95 ~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~--v~i~d~~~~~~~~~~~~~~~ 167 (339)
+ + .|++|++.+++. ..+..+. ......+|+| +++.|+.++. +|. |+++|+.+++.. .+..+..
T Consensus 267 s~~g~~~Iy~~d~~~g~~---~~lt~~~-----~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~ 336 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQL---TRLTNHF-----GIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN 336 (433)
T ss_pred eCCCCceEEEEECCCCCe---EECccCC-----CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCC
Confidence 2 2 799999988752 2333333 3446789998 8888887664 444 777777666533 2322333
Q ss_pred ceeEEEec-CCcEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEec
Q 040307 168 EVYDISWG-GFNVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDI 241 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~ 241 (339)
.....+|+ +++.|+..+.++ .|.+||+.+++.. .+... .......|+| +++.++..+.++. .|.++++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~----~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG----SLDESPSFAP-NGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC----CCCCCceECC-CCCEEEEEEecCCceEEEEEEC
Confidence 45578999 788887765443 5999999877633 22221 2344678998 8887777665432 3777777
Q ss_pred CCCCCceEEEecCCCCeeEEEecc
Q 040307 242 RFPTNPVVVLSKHEGSVNGISWAP 265 (339)
Q Consensus 242 ~~~~~~~~~~~~~~~~v~~~~~~p 265 (339)
. +.....+..+.+.+...+|+|
T Consensus 411 ~--g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 D--GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C--CCceEEcccCCCCCCCCccCC
Confidence 4 344566666667788888887
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=1.7e-13 Score=105.30 Aligned_cols=153 Identities=14% Similarity=0.343 Sum_probs=110.9
Q ss_pred eEEEeeecCCcccEEEEeeec------cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 21 STVAWSVRHDRKSRLAVGSFL------EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 21 ~~i~~sp~~~~~~~la~g~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
..+.|+|. |++|++-... ...-+...||.++..+.... .+.....++|.+++|+|++ +.+|..
T Consensus 9 ~~~~W~~~---G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~---~i~l~~~~~I~~~~WsP~g-----~~favi 77 (194)
T PF08662_consen 9 AKLHWQPS---GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE---SIELKKEGPIHDVAWSPNG-----NEFAVI 77 (194)
T ss_pred EEEEeccc---CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc---eeeccCCCceEEEEECcCC-----CEEEEE
Confidence 46889999 9888776520 01124567777765544433 2234556679999999999 555443
Q ss_pred -C--C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeccCC
Q 040307 95 -G--D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 95 -~--~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~ 167 (339)
+ + .|.+||++. + .+..+.. ..++.+.|+| +|++|++++. .|.|.+||.++.+.+.... |.
T Consensus 78 ~g~~~~~v~lyd~~~-~--~i~~~~~-------~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~- 144 (194)
T PF08662_consen 78 YGSMPAKVTLYDVKG-K--KIFSFGT-------QPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS- 144 (194)
T ss_pred EccCCcccEEEcCcc-c--EeEeecC-------CCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-
Confidence 3 3 899999973 2 5556643 5788999999 9999999874 4679999999888877764 43
Q ss_pred ceeEEEec-CCcEEEEEeC------CCcEEEEECCCC
Q 040307 168 EVYDISWG-GFNVFASVSG------DCSVRVFDLRDK 197 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~------d~~i~i~d~~~~ 197 (339)
.++.++|+ +|++|+++.. |..++||+....
T Consensus 145 ~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 145 DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 47899999 7999998874 788899998654
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.9e-13 Score=114.49 Aligned_cols=237 Identities=14% Similarity=0.111 Sum_probs=162.7
Q ss_pred eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
.+.++...+.+..+|||. .++|+|. . .|++||+.+-. ..+..|... ..|.-.-.+ .|-..++.--.
T Consensus 47 dfe~p~ast~ik~s~DGq----Y~lAtG~YKP~ikvydlanLS----LKFERhlDa---e~V~feiLs-DD~SK~v~L~~ 114 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQ----YLLATGTYKPQIKVYDLANLS----LKFERHLDA---EVVDFEILS-DDYSKSVFLQN 114 (703)
T ss_pred hcCCccccceeEecCCCc----EEEEecccCCceEEEEcccce----eeeeecccc---cceeEEEec-cchhhheEeec
Confidence 457888999999999993 3444554 3 99999998754 233333310 233333333 35555555566
Q ss_pred CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307 145 DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
|.+|-+... -|... .+. -...-.+++++ +..-|..++....|+-+++..+..+..+.. ..+.++++..++ ..
T Consensus 115 DR~IefHak-~G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~-~h 187 (703)
T KOG2321|consen 115 DRTIEFHAK-YGRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSINE-EH 187 (703)
T ss_pred Cceeeehhh-cCeee-eee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc---ccccceeeeecC-cc
Confidence 777776543 22211 111 12234678888 544455555566788899999885555433 246899999997 77
Q ss_pred CeEEEEeeCCCeEEEEecCCCCCceEEEe------cCCC-----CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307 224 RFMATVGMDSNKVVVLDIRFPTNPVVVLS------KHEG-----SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS 292 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~------~~~~-----~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~ 292 (339)
.+|++|+.+|. |.+||.+. ...+..+. .|.+ .|+++.|+-+| ..+++|+.+|.+.|||++...
T Consensus 188 gLla~Gt~~g~-VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~--- 261 (703)
T KOG2321|consen 188 GLLACGTEDGV-VEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASK--- 261 (703)
T ss_pred ceEEecccCce-EEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCC---
Confidence 89999999999 99999987 33333332 2322 49999999998 799999999999999999988
Q ss_pred CCCCCCCcccceeeecc--cceeEEEEecCCCCc-eEEEecCCeEEEEe
Q 040307 293 GNGGPSGDVEPELCYQS--MAEINVVRWSPLELD-WIAIAFVNKLQLLK 338 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~-l~~~~~d~~v~~w~ 338 (339)
|+....| ..+|..+.|.+.+.. -+.+.....++||+
T Consensus 262 ----------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 262 ----------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWD 300 (703)
T ss_pred ----------ceeecccCCccceeeecccccCCCceEEecchHHhhhcc
Confidence 8877776 457999999887433 44555666788886
No 242
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=3.3e-14 Score=122.33 Aligned_cols=258 Identities=19% Similarity=0.292 Sum_probs=182.1
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
.......+..|..+.|+|.......++.-+ ...-.+|++......... -+..+|..+|+.+.|.|+.. .
T Consensus 60 r~l~h~tpw~vad~qws~h~a~~~wiVsts-----~qkaiiwnlA~ss~~aIe--f~lhghsraitd~n~~~q~p----d 128 (1081)
T KOG0309|consen 60 RWLHHITPWQVADVQWSPHPAKPYWIVSTS-----NQKAIIWNLAKSSSNAIE--FVLHGHSRAITDINFNPQHP----D 128 (1081)
T ss_pred eeeeccCcchhcceecccCCCCceeEEecC-----cchhhhhhhhcCCccceE--EEEecCccceeccccCCCCC----c
Confidence 344445678899999999865444454444 778889888755443332 23479999999999999884 8
Q ss_pred eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccC
Q 040307 90 IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAHD 166 (339)
Q Consensus 90 ~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~ 166 (339)
++|+++ + .+..||+..... ++..+.... .....+.|+-.+++.+| .+....|.+||++.+. ++..+++|.
T Consensus 129 Vlatcsvdt~vh~wd~rSp~~-p~ys~~~w~-----s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~v 201 (1081)
T KOG0309|consen 129 VLATCSVDTYVHAWDMRSPHR-PFYSTSSWR-----SAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHV 201 (1081)
T ss_pred ceeeccccccceeeeccCCCc-ceeeeeccc-----ccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccc
Confidence 999998 6 999999998763 444444333 56778999975555555 4667899999998765 777888899
Q ss_pred CceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeE--------
Q 040307 167 REVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKV-------- 236 (339)
Q Consensus 167 ~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i-------- 236 (339)
..|+.++|+ -...+++++.|++|+.||............. ...++..-.+-|....+.+--...+..+
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt--t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT--TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS 279 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc--ccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence 999999998 4667899999999999998866432222221 2356666666663322222222211113
Q ss_pred -EEEecCCCCCceEEEecCCCCeeEEEeccCC---------CCeEEEEeCCCcEEEEEecC
Q 040307 237 -VVLDIRFPTNPVVVLSKHEGSVNGISWAPLY---------GRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 237 -~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~v~iwd~~~ 287 (339)
..|+......++..+.+|...|....|-..+ +..|+|-+.|..+++|-+..
T Consensus 280 d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 280 DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3455555567899999999998887775443 25799999999999998865
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.58 E-value=8.3e-13 Score=104.06 Aligned_cols=246 Identities=11% Similarity=0.148 Sum_probs=175.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+.+.+++...-|. ..-+.+.+ .|.+++||. +.+.++.-. .+...-+.++.++.+.++. ..|.+|-
T Consensus 23 ~~d~vn~~~l~~~---e~gv~~~s----~drtvrv~l-krds~q~wp--sI~~~mP~~~~~~~y~~e~-----~~L~vg~ 87 (404)
T KOG1409|consen 23 SQDDVNAAILIPK---EEGVISVS----EDRTVRVWL-KRDSGQYWP--SIYHYMPSPCSAMEYVSES-----RRLYVGQ 87 (404)
T ss_pred chhhhhhheeccC---CCCeEEcc----ccceeeeEE-eccccccCc--hhhhhCCCCceEeeeeccc-----eEEEEEE
Confidence 4577888888888 77788888 799999984 444444433 2223456789999999998 7888886
Q ss_pred C--cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 96 D--SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 96 ~--~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
+ ++.-+.+... +....+....|. ..+..+-|+- ....+++.+.|..+.-.-.+.+..+..+. .....++
T Consensus 88 ~ngtvtefs~sedfnkm~~~r~~~~h~-----~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~ 160 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTFLKDYLAHQ-----ARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASA 160 (404)
T ss_pred ecceEEEEEhhhhhhhcchhhhhhhhh-----cceeeEEecC-CceeEEEeccccceEEEeeccCCcccceE-eeccCCC
Confidence 5 6666655442 122344445566 8899999985 78899999998877654445554333332 1122223
Q ss_pred EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
+.+. . +...|...|.|.+-.+..... ..+.....|...+.+++|.| ...+|++|..|.. +.+||+.........
T Consensus 161 ~~~d~~--~~fvGd~~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~-vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 161 LQFDAL--YAFVGDHSGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHS-VIMWDIGGRKGTAYE 235 (404)
T ss_pred CceeeE--EEEecccccceEEEEEeecCC-ceEEEEcCcccceEEEEEcC-CCcEEEeccccCc-eEEEeccCCcceeee
Confidence 3333 2 555666677777766655442 22333345889999999998 8889999999998 999999876666788
Q ss_pred EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+.+|...|..+..-+.- +.+.+++.||.|.+|+++...
T Consensus 236 l~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 89999999999988887 699999999999999987654
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=8.4e-14 Score=109.59 Aligned_cols=217 Identities=14% Similarity=0.182 Sum_probs=150.5
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc-------------------------------cc
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF-------------------------------SA 62 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~-------------------------------~~ 62 (339)
.+....|..+.|.++.+...+|+++. |.+|++|.+.....+. .+
T Consensus 81 leieEKinkIrw~~~~n~a~FLlstN-----dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p 155 (433)
T KOG1354|consen 81 LEIEEKINKIRWLDDGNLAEFLLSTN-----DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP 155 (433)
T ss_pred hhhhhhhhhceecCCCCccEEEEecC-----CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence 34456899999999855444555555 9999999876543332 00
Q ss_pred eeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307 63 DNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA 140 (339)
Q Consensus 63 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 140 (339)
...+...|+--|+++.++.|. ..+.++.| .|-+|+++-.. .-.+..++.+.-++...-|++..|+|...+.|+
T Consensus 156 rRv~aNaHtyhiNSIS~NsD~-----Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~ 230 (433)
T KOG1354|consen 156 RRVYANAHTYHINSISVNSDK-----ETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFV 230 (433)
T ss_pred eeeccccceeEeeeeeecCcc-----ceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEE
Confidence 112223577889999999999 89999999 99999987543 112334444444444467899999998889999
Q ss_pred EEeCCCeEEEEECCCCee----eee------------eeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE
Q 040307 141 TCSVDTTCVIWDIDREIL----ETQ------------LVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII 203 (339)
Q Consensus 141 ~~~~d~~v~i~d~~~~~~----~~~------------~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 203 (339)
.++..|+|++.|++.... .+. +.+--..|.++.|+ .|+++++-.. -+|++||+.....+...
T Consensus 231 YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 231 YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVET 309 (433)
T ss_pred EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceE
Confidence 999999999999985321 001 11123468899999 7888887543 58999999766555554
Q ss_pred EeCCC----------CCC---CeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 204 YENPV----------QDC---PLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 204 ~~~~~----------~~~---~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
+.... ... .-..++|+- ++.++++|+..+. .++|+...
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~-frvf~~~~ 360 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNV-FRVFNLAR 360 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccce-EEEecCCC
Confidence 43311 011 123578885 7889999999998 99999654
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.57 E-value=1.3e-10 Score=98.37 Aligned_cols=264 Identities=16% Similarity=0.121 Sum_probs=166.4
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.........++++|+ +++|.+.......++.|..|.++.+++.+...... .........++++|++ ++|++
T Consensus 33 ~~~~~~Ps~l~~~~~---~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~g-----~~l~v 103 (345)
T PF10282_consen 33 VAEGENPSWLAVSPD---GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPDG-----RFLYV 103 (345)
T ss_dssp EEESSSECCEEE-TT---SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTTS-----SEEEE
T ss_pred ecCCCCCceEEEEeC---CCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecCC-----CEEEE
Confidence 334567788999999 88888887211136899999998876666553333 2244566789999999 77776
Q ss_pred eC--C-cEEEEeecCC-cceeEEEeecC------CCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCe--e--
Q 040307 94 SG--D-SLRLWEIHDD-RTELKSLLNSN------KTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREI--L-- 158 (339)
Q Consensus 94 ~~--~-~i~iw~~~~~-~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~--~-- 158 (339)
+. + .|.+++++.. ..........+ ..........++.++| +++++++... ...|.+|++.... .
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 63 3 9999999874 32122111111 0011125677899998 8887777643 4589999987654 2
Q ss_pred eeeee-ccCCceeEEEec-CCcEEE-EEeCCCcEEEEECCCCc-ceee---EEeC---CCCCCCeEEEEEecCCCCeEEE
Q 040307 159 ETQLV-AHDREVYDISWG-GFNVFA-SVSGDCSVRVFDLRDKE-RSTI---IYEN---PVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 159 ~~~~~-~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~d~~~~~-~~~~---~~~~---~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
...+. ......+.+.|+ +++++. +.-.++.|.++++.... .... +... .........++++| ++++|++
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyv 261 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYV 261 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEE
Confidence 11221 234567899999 666554 44567889999988222 1111 1111 11123678899998 8999988
Q ss_pred EeeCCCeEEEEecCCCCCce---EEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCC
Q 040307 229 VGMDSNKVVVLDIRFPTNPV---VVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPG 289 (339)
Q Consensus 229 ~~~d~~~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~ 289 (339)
+......|.+|++......+ ..+.......+.++++|+|. +|+++. .++.|.+|++....
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR-YLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS-EEEEEETTTTEEEEEEEETTT
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC-EEEEEecCCCeEEEEEEeCCC
Confidence 88777679999995322223 33333345589999999995 666655 67899999987544
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.2e-11 Score=107.05 Aligned_cols=237 Identities=12% Similarity=0.084 Sum_probs=140.9
Q ss_pred EEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe-E-EEeC--C--cEEEEeecCCcceeEEEeecCCCccC
Q 040307 49 ELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI-V-ATSG--D--SLRLWEIHDDRTELKSLLNSNKTSEF 122 (339)
Q Consensus 49 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-l-a~~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~ 122 (339)
.||-.+.++..... + ......+..-.|+||++ .+ + .+.. + .|.+.++.+++...+..+.+
T Consensus 166 ~l~~~d~dG~~~~~---l-t~~~~~~~sP~wSPDG~----~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g------ 231 (428)
T PRK01029 166 ELWSVDYDGQNLRP---L-TQEHSLSITPTWMHIGS----GFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG------ 231 (428)
T ss_pred eEEEEcCCCCCceE---c-ccCCCCcccceEccCCC----ceEEEEEEccCCCceEEEEECCCCCceEeecCCC------
Confidence 44446665555443 1 33445567889999993 22 2 2332 2 78888998886444444433
Q ss_pred CCCEEEEEEcCCCCCEEEEEeC-CC----eEEEEECCCC---eeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEE
Q 040307 123 SSAITSFDWAGFDTRRVATCSV-DT----TCVIWDIDRE---ILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVF 192 (339)
Q Consensus 123 ~~~i~~~~~~~~~~~~l~~~~~-d~----~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~ 192 (339)
.....+|+| |++.|+..+. +| .+.+|++..+ +...............+|+ +++.|+..+ .++...+|
T Consensus 232 --~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 232 --NQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred --CccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 344679999 9988887653 22 3444776653 2222222222344678999 778777655 46655555
Q ss_pred --ECCCC-cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCCCCCceEEEecCCCCeeEEEeccCC
Q 040307 193 --DLRDK-ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY 267 (339)
Q Consensus 193 --d~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~ 267 (339)
++... .....+ .. ....+....|+| +|+.|+..+.++ ..|.+||+.. ++ ...+......+....|+|+|
T Consensus 309 ~~~~~~~g~~~~~l-t~--~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~-g~-~~~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 309 IMQIDPEGQSPRLL-TK--KYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT-GR-DYQLTTSPENKESPSWAIDS 382 (428)
T ss_pred EEECcccccceEEe-cc--CCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC-CC-eEEccCCCCCccceEECCCC
Confidence 44322 212222 11 234567889999 788777665442 2499999876 33 34444334467789999999
Q ss_pred CCeEE-EEeCC--CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307 268 GRRLC-SVADD--SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 268 ~~~l~-~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 322 (339)
. .|+ ++..+ ..|.++|+...+ ...+....+.+...+|+|-.
T Consensus 383 ~-~L~f~~~~~g~~~L~~vdl~~g~-------------~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 L-HLVYSAGNSNESELYLISLITKK-------------TRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred C-EEEEEECCCCCceEEEEECCCCC-------------EEEeecCCCcccCceecCCC
Confidence 5 555 44433 467777877665 33333445567788998854
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=4.8e-12 Score=105.87 Aligned_cols=292 Identities=12% Similarity=0.163 Sum_probs=180.1
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeee-------ccccCCeEEEEecCCCCCcccceeeEeecCCCC-ceEEEEcC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSF-------LEDYSNKIELVNFNPETSDFSADNRLIFDHPYT-PTNIAFFP 81 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~-------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~ 81 (339)
.+.+|.|+ .|.-+.|||. .+||++=+. ..+....+.|||+... ........ ...+.. -.-..||.
T Consensus 243 r~~RF~Hp-~Vq~idfSP~---EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG--~lkrsF~~-~~~~~~~WP~frWS~ 315 (698)
T KOG2314|consen 243 RIQRFYHP-GVQFIDFSPN---EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG--LLKRSFPV-IKSPYLKWPIFRWSH 315 (698)
T ss_pred HHHhccCC-CceeeecCCc---cceEEEecCCccccCcccCCCceEEEEEcccc--chhcceec-cCCCccccceEEecc
Confidence 34455554 5778999999 999998665 1223468999776543 33320011 111222 23568999
Q ss_pred CCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-----CCeEEEEECCC
Q 040307 82 SEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-----DTTCVIWDIDR 155 (339)
Q Consensus 82 ~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~ 155 (339)
|+ +++|.-.. .|.||+...-...-...++- ..|....|+| .+++||.=.. -..+.+-.+.+
T Consensus 316 Dd-----Ky~Arm~~~sisIyEtpsf~lld~Kslki-------~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs 382 (698)
T KOG2314|consen 316 DD-----KYFARMTGNSISIYETPSFMLLDKKSLKI-------SGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPS 382 (698)
T ss_pred CC-----ceeEEeccceEEEEecCceeeecccccCC-------ccccCcccCC-CcceEEEEcccccCCcceEEEEecCc
Confidence 99 89998775 99999977643111222222 6788999999 7777775332 23455666666
Q ss_pred CeeeeeeeccCCceeEEEec-CCcEEEEE----------eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 156 EILETQLVAHDREVYDISWG-GFNVFASV----------SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 156 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
++.+++-.-+.-.=..+-|- .|++|+.- +.-..+.|+.++....+...... ...|...+|-| .|+
T Consensus 383 ~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP-~gd 458 (698)
T KOG2314|consen 383 KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEP-HGD 458 (698)
T ss_pred cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeecc-CCC
Confidence 66555544333221223344 56666532 22345778888888877666655 46889999999 555
Q ss_pred eEEE--EeeCCCeEEEEecCC-CCCceEEEecCCCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCCCCCCCCCCC
Q 040307 225 FMAT--VGMDSNKVVVLDIRF-PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPGYRSGNGGPS 298 (339)
Q Consensus 225 ~l~~--~~~d~~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~ 298 (339)
.+++ |......+.+|-+.. ..++.....-.....+.+.|+|.| ++++.+. ..|.+.++|+....
T Consensus 459 kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~--------- 528 (698)
T KOG2314|consen 459 KFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYAD--------- 528 (698)
T ss_pred eEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCC-cEEEEEEecccccceEEEecchhh---------
Confidence 5444 333333488998873 222221112223567899999999 5777654 57899999998643
Q ss_pred CcccceeeecccceeEEEEecCCCCceEEEec------CCeEEEEe
Q 040307 299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAF------VNKLQLLK 338 (339)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~------d~~v~~w~ 338 (339)
........| ...+.+.|.|.|+|+++++. |..-++|.
T Consensus 529 --~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 529 --LKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred --hhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEE
Confidence 111222223 35788999999999988764 55555554
No 248
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=3.5e-13 Score=112.05 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=138.7
Q ss_pred CeEEEe-CCcEEEEeecCCc--ceeE--EEeecCCCccCCCCEEEEEEcC----CCCCEEEEEeCCCeEEEEECCCCeee
Q 040307 89 DIVATS-GDSLRLWEIHDDR--TELK--SLLNSNKTSEFSSAITSFDWAG----FDTRRVATCSVDTTCVIWDIDREILE 159 (339)
Q Consensus 89 ~~la~~-~~~i~iw~~~~~~--~~~~--~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~d~~v~i~d~~~~~~~ 159 (339)
+.|+-. ++.+++|+..... ..++ ..+.+ ...++-+|+. ..+--++.|-.-|.|.+.|....+..
T Consensus 136 d~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~g-------t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~s 208 (636)
T KOG2394|consen 136 DRLCFNVGRELYVYSYRGAADLSKPIDKREYKG-------TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVS 208 (636)
T ss_pred CEEEEecCCeEEEEEccCcchhccchhhhcccC-------CCCceecccccccCCCCcceEEeeccCceEEecchhhHHH
Confidence 455544 4589999987432 1111 12222 2233444421 15667888888899999987664322
Q ss_pred eeee----ccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 160 TQLV----AHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 160 ~~~~----~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
+.+. -.+..|+|+.|- +...|+.+-.+|.+++||..-.. . .......+ .+ ++..++...
T Consensus 209 klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~---~t~p~~~~-~k-~~~~f~i~t--- 273 (636)
T KOG2394|consen 209 KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------G---ATAPSYQA-LK-DGDQFAILT--- 273 (636)
T ss_pred HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------c---CCCCcccc-cC-CCCeeEEee---
Confidence 2221 123679999998 57788888999999999972111 1 01111111 12 455554332
Q ss_pred CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccce
Q 040307 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAE 312 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 312 (339)
|--.....|+.....-.+.|+.++|+||| ++||+.+.||.++|||+...+ .+ ....--+.
T Consensus 274 -----~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~e-------------Llg~mkSYFGG 334 (636)
T KOG2394|consen 274 -----SKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQE-------------LLGVMKSYFGG 334 (636)
T ss_pred -----eeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHH-------------HHHHHHhhccc
Confidence 22222235677666667799999999999 699999999999999999977 33 22233567
Q ss_pred eEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 313 INVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 313 i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..+++|||||+++++++.|.-|.||.+
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEe
Confidence 899999999999999999999999974
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=7.9e-12 Score=109.10 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=132.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC---C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE-
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG---D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT- 141 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~- 141 (339)
..+...+.+..|+||+ +.|+..+ + .|.+||+.+++...+..+. .......|+| +++.|+.
T Consensus 214 ~~~~~~~~~p~wSPDG-----~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--------g~~~~~~wSP-DG~~La~~ 279 (448)
T PRK04792 214 LRSPEPLMSPAWSPDG-----RKLAYVSFENRKAEIFVQDIYTQVREKVTSFP--------GINGAPRFSP-DGKKLALV 279 (448)
T ss_pred ecCCCcccCceECCCC-----CEEEEEEecCCCcEEEEEECCCCCeEEecCCC--------CCcCCeeECC-CCCEEEEE
Confidence 4567788999999999 6666543 2 7889999887633333232 2334679998 8887765
Q ss_pred EeCCCe--EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CC--cEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307 142 CSVDTT--CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DC--SVRVFDLRDKERSTIIYENPVQDCPLLR 215 (339)
Q Consensus 142 ~~~d~~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 215 (339)
.+.++. |+++|+.+++. ..+..+.......+|+ +++.|+..+. ++ .|.++|+.+++........ .....
T Consensus 280 ~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g----~~~~~ 354 (448)
T PRK04792 280 LSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG----EQNLG 354 (448)
T ss_pred EeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC----CCCcC
Confidence 455664 77888887764 3444455566788999 6777765543 33 4666777766633332222 22345
Q ss_pred EEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc--EEEEEecCCCCC
Q 040307 216 LEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR--ALIWEVVGPGYR 291 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--v~iwd~~~~~~~ 291 (339)
.+|+| +|++|+..+.++. .|.++|+.. +. ...+... .......|+|+|..++++...++. +.+++.+...
T Consensus 355 ~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~-- 428 (448)
T PRK04792 355 GSITP-DGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF-- 428 (448)
T ss_pred eeECC-CCCEEEEEEecCCceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc--
Confidence 78998 7787777665433 355667665 22 2333322 223356899999534444444554 5555654332
Q ss_pred CCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 292 SGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
......+.+.+...+|+|-
T Consensus 429 -----------~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 429 -----------KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred -----------eEECcCCCCCcCCCccCCC
Confidence 2333344556788889873
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.1e-11 Score=106.73 Aligned_cols=232 Identities=14% Similarity=0.149 Sum_probs=141.4
Q ss_pred EEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCccCC
Q 040307 49 ELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSEFS 123 (339)
Q Consensus 49 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~~~ 123 (339)
+||-++.++..... ...+...+....|+|++ +.|+..+ . .|.+|++.+++.+.+....
T Consensus 180 ~l~~~d~~g~~~~~----l~~~~~~~~~p~wSpDG-----~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-------- 242 (430)
T PRK00178 180 TLQRSDYDGARAVT----LLQSREPILSPRWSPDG-----KRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-------- 242 (430)
T ss_pred EEEEECCCCCCceE----EecCCCceeeeeECCCC-----CEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--------
Confidence 44445555544332 24667788999999999 6666543 2 7999999887633332222
Q ss_pred CCEEEEEEcCCCCCEEEE-EeCCC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CC--cEEEEECCC
Q 040307 124 SAITSFDWAGFDTRRVAT-CSVDT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DC--SVRVFDLRD 196 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~i~d~~~ 196 (339)
..+....|+| +++.|+. .+.+| .|+++|+.+++.. .+..+........|+ +++.|+..+. ++ .|+++|+.+
T Consensus 243 g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 243 GLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred CCcCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 3344689998 8887764 44454 6888899877643 444455556678899 6776665553 33 577778877
Q ss_pred CcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307 197 KERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV 274 (339)
Q Consensus 197 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 274 (339)
++........ .......|+| +++.|+..+.++. .|.++|+... . ...+.. ........|+|+|. .++..
T Consensus 321 g~~~~lt~~~----~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg-~-~~~lt~-~~~~~~p~~spdg~-~i~~~ 391 (430)
T PRK00178 321 GRAERVTFVG----NYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRG-S-VRILTD-TSLDESPSVAPNGT-MLIYA 391 (430)
T ss_pred CCEEEeecCC----CCccceEECC-CCCEEEEEEccCCceEEEEEECCCC-C-EEEccC-CCCCCCceECCCCC-EEEEE
Confidence 6633332221 2334578998 7887777664432 4888898763 2 233332 22334678999995 55554
Q ss_pred e-CCCc--EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 275 A-DDSR--ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 275 ~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
+ .++. +.++++.... ......+.+.+...+|+|-
T Consensus 392 ~~~~g~~~l~~~~~~g~~-------------~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 392 TRQQGRGVLMLVSINGRV-------------RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EecCCceEEEEEECCCCc-------------eEECcCCCCCcCCCccCCC
Confidence 4 4444 5555554333 2233334556778888874
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=6e-12 Score=109.92 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=132.4
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---TTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
.|.++|.+... ...+..+. ..+...+|+| ++++|+.+..+ ..|++||+.+++... +..+...+.+++
T Consensus 171 ~l~~~d~~g~~---~~~l~~~~-----~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~ 240 (417)
T TIGR02800 171 ELQVADYDGAN---PQTITRSR-----EPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPA 240 (417)
T ss_pred eEEEEcCCCCC---CEEeecCC-----CceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceE
Confidence 68888876543 23333333 5688899998 99999887654 479999998876433 334555667789
Q ss_pred ec-CCcEEE-EEeCCC--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC-C-eEEEEecCCCCCc
Q 040307 174 WG-GFNVFA-SVSGDC--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS-N-KVVVLDIRFPTNP 247 (339)
Q Consensus 174 ~~-~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-~-~i~i~d~~~~~~~ 247 (339)
|+ +++.|+ +.+.++ .|++||+.++..... .. +........|+| +++.|+..+..+ . .|+++|+.. . .
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~---~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~-~-~ 313 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TN---GPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG-G-E 313 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CC---CCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC-C-C
Confidence 99 676665 444444 588899887653222 11 223345678998 788777655433 2 377777764 2 2
Q ss_pred eEEEecCCCCeeEEEeccCCCCeEEEEeCCC---cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307 248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDS---RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324 (339)
Q Consensus 248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 324 (339)
...+..+...+..+.|+|++ ++|+.++.++ .|.+||+.... ...... ........|+|+++.
T Consensus 314 ~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~-~~~~~~p~~spdg~~ 378 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG-------------ERVLTD-TGLDESPSFAPNGRM 378 (417)
T ss_pred EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC-------------eEEccC-CCCCCCceECCCCCE
Confidence 44555556677889999999 5777776654 67788877644 222221 122345689999998
Q ss_pred eEEEecCC
Q 040307 325 WIAIAFVN 332 (339)
Q Consensus 325 l~~~~~d~ 332 (339)
|+.++.++
T Consensus 379 l~~~~~~~ 386 (417)
T TIGR02800 379 ILYATTRG 386 (417)
T ss_pred EEEEEeCC
Confidence 87766543
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=9.6e-12 Score=108.82 Aligned_cols=219 Identities=15% Similarity=0.132 Sum_probs=134.6
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE-E
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA-T 93 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la-~ 93 (339)
.+...+.+.+|+|+ ++.|++.+.. +....|.+|++ .++.... + ....+.+....|+|++ +.|+ +
T Consensus 196 ~~~~~~~~p~wSpD---G~~la~~s~~-~~~~~l~~~~l--~~g~~~~---l-~~~~g~~~~~~~SpDG-----~~la~~ 260 (430)
T PRK00178 196 QSREPILSPRWSPD---GKRIAYVSFE-QKRPRIFVQNL--DTGRREQ---I-TNFEGLNGAPAWSPDG-----SKLAFV 260 (430)
T ss_pred cCCCceeeeeECCC---CCEEEEEEcC-CCCCEEEEEEC--CCCCEEE---c-cCCCCCcCCeEECCCC-----CEEEEE
Confidence 44567889999999 9999887731 11235666554 4443332 1 2233445678999999 5555 4
Q ss_pred eC--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC--eEEEEECCCCeeeeeeeccC
Q 040307 94 SG--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--TCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 94 ~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~ 166 (339)
.. + .|++||+++++. ..+..+. .......|+| +++.|+..+. +| .|+++|+.+++... +....
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~---~~lt~~~-----~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~ 330 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQL---SRVTNHP-----AIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVG 330 (430)
T ss_pred EccCCCceEEEEECCCCCe---EEcccCC-----CCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCC
Confidence 33 2 788899988752 2233333 3455678998 8887776654 33 57788887776432 22222
Q ss_pred CceeEEEec-CCcEEEEEeCC-C--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEe
Q 040307 167 REVYDISWG-GFNVFASVSGD-C--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLD 240 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d 240 (339)
.......|+ +++.++..+.+ + .|.++|+.+++... +... .......|+| +|+.++..+.++. .+.+++
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~----~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT----SLDESPSVAP-NGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC----CCCCCceECC-CCCEEEEEEecCCceEEEEEE
Confidence 233457888 77888776643 3 48889998776322 2221 1223568998 7777776665532 366666
Q ss_pred cCCCCCceEEEecCCCCeeEEEeccC
Q 040307 241 IRFPTNPVVVLSKHEGSVNGISWAPL 266 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~v~~~~~~p~ 266 (339)
+. +.....+..+.+.+...+|+|-
T Consensus 405 ~~--g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 405 IN--GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CC--CCceEECcCCCCCcCCCccCCC
Confidence 64 3444556555667788888874
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=2.8e-12 Score=114.58 Aligned_cols=184 Identities=15% Similarity=0.153 Sum_probs=145.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc-eeEE---Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCC
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDRE-VYDI---SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQ 209 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-v~~~---~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 209 (339)
+...++.+..+..+.+||...+.....+...... ..++ .++ +.-++++|+.-+.|.+|+......+. ... .|
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~--GH 174 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLK--GH 174 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eec--cc
Confidence 6788899999999999999887766666432221 1111 122 35688899999999999998554444 233 48
Q ss_pred CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
++.+-++.|+- +|.++++.++|.. +++|++.+........-+|...|+.+.|.|. .++|++.|-+.++|+.....
T Consensus 175 eG~iF~i~~s~-dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 175 EGSIFSIVTSL-DGRYIASVSDDRS-IRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred CCceEEEEEcc-CCcEEEEEecCcc-eeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccce
Confidence 89999999995 9999999999999 9999999866655677889999999999998 69999999999999666654
Q ss_pred CCCCCCCCCCcccceeeecc-cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 290 YRSGNGGPSGDVEPELCYQS-MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.....+| ...|..++..+.....++++.|+++++|++
T Consensus 250 -------------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 250 -------------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred -------------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 2233445 456999999999888889999999999974
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6.7e-12 Score=109.58 Aligned_cols=217 Identities=15% Similarity=0.120 Sum_probs=131.8
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE-eC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT-SG 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~-~~ 95 (339)
..++.+.+|+|| |+.|+..+. .++...||-++..+++... + ....+.....+|+|++ +.|+. ..
T Consensus 217 ~~~~~~p~wSPD---G~~La~~s~---~~g~~~L~~~dl~tg~~~~---l-t~~~g~~~~~~wSPDG-----~~La~~~~ 281 (448)
T PRK04792 217 PEPLMSPAWSPD---GRKLAYVSF---ENRKAEIFVQDIYTQVREK---V-TSFPGINGAPRFSPDG-----KKLALVLS 281 (448)
T ss_pred CCcccCceECCC---CCEEEEEEe---cCCCcEEEEEECCCCCeEE---e-cCCCCCcCCeeECCCC-----CEEEEEEe
Confidence 456788999999 999998774 3444444445554444332 1 2223344578999999 65554 33
Q ss_pred -C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC--eEEEEECCCCeeeeeeeccCCc
Q 040307 96 -D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--TCVIWDIDREILETQLVAHDRE 168 (339)
Q Consensus 96 -~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~~ 168 (339)
+ .|+++|+++++. ..+..+. .......|+| +++.|+..+. ++ .|+++|+.+++... +......
T Consensus 282 ~~g~~~Iy~~dl~tg~~---~~lt~~~-----~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~ 351 (448)
T PRK04792 282 KDGQPEIYVVDIATKAL---TRITRHR-----AIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ 351 (448)
T ss_pred CCCCeEEEEEECCCCCe---EECccCC-----CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC
Confidence 2 688888887752 2333333 3456789998 8887776654 33 57777887776433 3222223
Q ss_pred eeEEEec-CCcEEEEEeCC-C--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecC
Q 040307 169 VYDISWG-GFNVFASVSGD-C--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIR 242 (339)
Q Consensus 169 v~~~~~~-~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~ 242 (339)
....+|+ ++++|+..+.+ + .|.++|+.+++... +... .......|+| +++.|+....++. .+++++..
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~----~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST----RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC----CCCCCceECC-CCCEEEEEEecCCceEEEEEECC
Confidence 3456899 77777766543 3 45567877765322 2211 1122457998 7777666555443 36666653
Q ss_pred CCCCceEEEecCCCCeeEEEeccC
Q 040307 243 FPTNPVVVLSKHEGSVNGISWAPL 266 (339)
Q Consensus 243 ~~~~~~~~~~~~~~~v~~~~~~p~ 266 (339)
+.....+..+.+.+...+|+|-
T Consensus 426 --G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 426 --GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred --CCceEECcCCCCCcCCCccCCC
Confidence 4455666666677888899874
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.3e-11 Score=107.89 Aligned_cols=215 Identities=17% Similarity=0.211 Sum_probs=135.1
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE-Ee
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA-TS 94 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la-~~ 94 (339)
+...+.+.+|+|+ +++||++.... ....|++|++. ++.... ...+...+.+++|+|++ +.|+ +.
T Consensus 188 ~~~~~~~p~~Spd---g~~la~~~~~~-~~~~i~v~d~~--~g~~~~----~~~~~~~~~~~~~spDg-----~~l~~~~ 252 (417)
T TIGR02800 188 SREPILSPAWSPD---GQKLAYVSFES-GKPEIYVQDLA--TGQREK----VASFPGMNGAPAFSPDG-----SKLAVSL 252 (417)
T ss_pred CCCceecccCCCC---CCEEEEEEcCC-CCcEEEEEECC--CCCEEE----eecCCCCccceEECCCC-----CEEEEEE
Confidence 3456889999999 99999987311 12467776554 333322 13455667789999999 5444 44
Q ss_pred C---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-C--eEEEEECCCCeeeeeeeccCC
Q 040307 95 G---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-T--TCVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 95 ~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~ 167 (339)
+ . .|++|++.+++. ..+..+. .......|+| +++.|+..+.. + .|+++|+.+++. ..+..+..
T Consensus 253 ~~~~~~~i~~~d~~~~~~---~~l~~~~-----~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~ 322 (417)
T TIGR02800 253 SKDGNPDIYVMDLDGKQL---TRLTNGP-----GIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGG 322 (417)
T ss_pred CCCCCccEEEEECCCCCE---EECCCCC-----CCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCC
Confidence 3 2 799999887752 2233332 3344678998 88888766543 3 688888877653 34444555
Q ss_pred ceeEEEec-CCcEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEec
Q 040307 168 EVYDISWG-GFNVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDI 241 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~ 241 (339)
....+.|+ ++++++.++.++ .|.+||+.+... ..+... .......|+| +++.|+..+.++. .+++.+.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~----~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT----GLDESPSFAP-NGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC----CCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC
Confidence 67788999 788888887776 788999887542 222211 1234568998 7777777666654 2555554
Q ss_pred CCCCCceEEEecCCCCeeEEEe
Q 040307 242 RFPTNPVVVLSKHEGSVNGISW 263 (339)
Q Consensus 242 ~~~~~~~~~~~~~~~~v~~~~~ 263 (339)
. +.....+..+.+.+..++|
T Consensus 397 ~--g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 D--GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C--CceeeECCCCCCCcCCCCC
Confidence 3 3334445444445555555
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=8.8e-10 Score=88.14 Aligned_cols=266 Identities=11% Similarity=0.075 Sum_probs=176.3
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
+........++-++|+|+ +++|.++.. .+.+|.|.-|.++...+.+...... .....+.+.+++++++ ++
T Consensus 33 ~~~v~~~~nptyl~~~~~---~~~LY~v~~-~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~g-----~~ 102 (346)
T COG2706 33 LQLVAELGNPTYLAVNPD---QRHLYVVNE-PGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDEDG-----RF 102 (346)
T ss_pred hhhccccCCCceEEECCC---CCEEEEEEe-cCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCCC-----CE
Confidence 333445577889999999 888888773 2237899999999887776652222 1223344899999999 88
Q ss_pred EEEeC---CcEEEEeecC-CcceeEEEeecCCCc----cC-CCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeee
Q 040307 91 VATSG---DSLRLWEIHD-DRTELKSLLNSNKTS----EF-SSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILET 160 (339)
Q Consensus 91 la~~~---~~i~iw~~~~-~~~~~~~~~~~~~~~----~~-~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~ 160 (339)
|.++. +.|.++-++. +.......+..|... .. ...+....+.| ++++|++..- --.|.+|++..++...
T Consensus 103 vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 103 VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccc
Confidence 88886 3999999866 332222222223311 11 12377888998 8988888764 3478999998775322
Q ss_pred ee---eccCCceeEEEec-CCcEEEEE-eCCCcEEEEECCCCc-ceeeE------EeCCCCCCCeEEEEEecCCCCeEEE
Q 040307 161 QL---VAHDREVYDISWG-GFNVFASV-SGDCSVRVFDLRDKE-RSTII------YENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 161 ~~---~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~-~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
.- -......+.|.|+ ++++.... --+++|-+|...... ....+ ............|..+| +|++|.+
T Consensus 182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYa 260 (346)
T COG2706 182 ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYA 260 (346)
T ss_pred ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEE
Confidence 11 1234567899999 56554443 458899999988741 11111 11112345678899998 9999999
Q ss_pred EeeCCCeEEEEecCCCCCceEEE---ecCCCCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCCC
Q 040307 229 VGMDSNKVVVLDIRFPTNPVVVL---SKHEGSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGPG 289 (339)
Q Consensus 229 ~~~d~~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~ 289 (339)
+...-..|.+|.+...+..+..+ ..+...-+.+.++|.+. +|+++.. +..|.+|..+...
T Consensus 261 sNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~-~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 261 SNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR-FLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC-EEEEEccCCCcEEEEEEcCCC
Confidence 87665569999887654433333 23444578999999994 7776664 4579999888766
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=5.7e-12 Score=99.42 Aligned_cols=201 Identities=16% Similarity=0.285 Sum_probs=141.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
-+.++++++++++ ...|.+|- ..|++.-+.+..+-++....... ..|...|..+-|+-.. ..+++.+
T Consensus 67 mP~~~~~~~y~~e---~~~L~vg~----~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~-----e~V~s~~ 133 (404)
T KOG1409|consen 67 MPSPCSAMEYVSE---SRRLYVGQ----DNGTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTH-----EWVLSTG 133 (404)
T ss_pred CCCCceEeeeecc---ceEEEEEE----ecceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCCc-----eeEEEec
Confidence 3678999999999 99999999 79999988776655544433344 6899999999999877 6777766
Q ss_pred -CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC--CCCeeeeeeeccCCceeEE
Q 040307 96 -DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI--DREILETQLVAHDREVYDI 172 (339)
Q Consensus 96 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~--~~~~~~~~~~~~~~~v~~~ 172 (339)
|+-..|....... .+.++. +....+++.+. -.+...|...|.|.+-.+ ..-..+..+.+|.+.+.++
T Consensus 134 ~dk~~~~hc~e~~~----~lg~Y~---~~~~~t~~~~d---~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 134 KDKQFAWHCTESGN----RLGGYN---FETPASALQFD---ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL 203 (404)
T ss_pred cccceEEEeeccCC----cccceE---eeccCCCCcee---eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEE
Confidence 5666665543221 111110 00112222222 114455666676666554 3445778889999999999
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
+|. ...+|++|..|..+.+||+...+........ |...|..+...+ --+.+.+++.|+. |.+||++.
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g--h~~kV~~l~~~~-~t~~l~S~~edg~-i~~w~mn~ 271 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG--HNDKVQALSYAQ-HTRQLISCGEDGG-IVVWNMNV 271 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCCcceeeeecc--chhhhhhhhhhh-hheeeeeccCCCe-EEEEeccc
Confidence 999 5789999999999999999887654444433 667888888775 6678889999999 99999875
No 258
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.48 E-value=2.5e-10 Score=106.87 Aligned_cols=300 Identities=16% Similarity=0.200 Sum_probs=185.0
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecC--CCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFN--PETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+.|.++.|-++ ...++++. .+|.|.++..+ .+...... ...-...|.+++||||+ .+||..+
T Consensus 76 ~~ivs~~yl~d---~~~l~~~~----~~Gdi~~~~~~~~~~~~~~E~----VG~vd~GI~a~~WSPD~-----Ella~vT 139 (928)
T PF04762_consen 76 DKIVSFQYLAD---SESLCIAL----ASGDIILVREDPDPDEDEIEI----VGSVDSGILAASWSPDE-----ELLALVT 139 (928)
T ss_pred CcEEEEEeccC---CCcEEEEE----CCceEEEEEccCCCCCceeEE----EEEEcCcEEEEEECCCc-----CEEEEEe
Confidence 67999999999 87888888 79999996443 33333333 23456789999999999 6776654
Q ss_pred --CcEEEEeec----------C---Ccc--------eeEEEeecCCCc----------------c---CCCCEEEEEEcC
Q 040307 96 --DSLRLWEIH----------D---DRT--------ELKSLLNSNKTS----------------E---FSSAITSFDWAG 133 (339)
Q Consensus 96 --~~i~iw~~~----------~---~~~--------~~~~~~~~~~~~----------------~---~~~~i~~~~~~~ 133 (339)
+++.+-.-+ . ++. +....|.|.... + ....-..++|..
T Consensus 140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG 219 (928)
T PF04762_consen 140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG 219 (928)
T ss_pred CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC
Confidence 355443211 0 000 011111111000 0 112445788996
Q ss_pred CCCCEEEEEeC---C---CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC---CCcEEEEECCCCcceeeE
Q 040307 134 FDTRRVATCSV---D---TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG---DCSVRVFDLRDKERSTII 203 (339)
Q Consensus 134 ~~~~~l~~~~~---d---~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---d~~i~i~d~~~~~~~~~~ 203 (339)
||.++|+.+. . ..++||+-+ |....+...-.+--.+++|. .|++||+.-. ...|.+|.-...+.-...
T Consensus 220 -DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~ 297 (928)
T PF04762_consen 220 -DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFT 297 (928)
T ss_pred -CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEe
Confidence 9999999875 2 579999965 65443333333334578898 5888887764 345666764444322222
Q ss_pred EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-eEEEecC-CCCeeEEEeccCCCCeEEEEeCCCcEE
Q 040307 204 YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-VVVLSKH-EGSVNGISWAPLYGRRLCSVADDSRAL 281 (339)
Q Consensus 204 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~v~ 281 (339)
.........+..+.|++ ++.+||..-.+. |.+|-..+..-. .+.+... ...+..+.|+|..+..|...+.+|.+.
T Consensus 298 l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNS-DSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred cCCCCCCceeeEEEECC-CCCEEEEEecCC--ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence 22223456899999997 999999966554 999988763311 2223222 234556999999887888888878776
Q ss_pred EEEecCCCC-----CCCCCCCC---------------C-cccce--eeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 282 IWEVVGPGY-----RSGNGGPS---------------G-DVEPE--LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 282 iwd~~~~~~-----~~~~~~~~---------------~-~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.+++...-. .+.+.+.. . ..+|. ........|.+++|++++..+++...||.|.+|.
T Consensus 375 ~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 375 IYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 655533211 11000100 1 11233 2334577899999999988788889999999886
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=1.7e-12 Score=115.85 Aligned_cols=181 Identities=18% Similarity=0.200 Sum_probs=137.7
Q ss_pred CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 96 DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 96 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
+.+.+||..... ....+..... .......-+.+++ +.-++++|+.-+.|.+|+....+.-..+.+|.+.+.++.|+
T Consensus 109 ns~~i~d~~~~~--~~~~i~~~er-~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s 184 (967)
T KOG0974|consen 109 NSLLIRDSKNSS--VLSKIQSDER-CTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTS 184 (967)
T ss_pred ceEEEEecccCc--eehhcCCCce-EEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEc
Confidence 388888887764 2222222110 0001122233454 67899999999999999987433333577999999999999
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307 176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH 254 (339)
Q Consensus 176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~ 254 (339)
++.++++.+.|+++++|++.+.+...... ..|...+..+.|+| + .+++++.|-+ .++|+.. ...+..+..|
T Consensus 185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~--fgHsaRvw~~~~~~-n--~i~t~gedct-crvW~~~--~~~l~~y~~h 256 (967)
T KOG0974|consen 185 LDGRYIASVSDDRSIRLWPIDSREVLGCTG--FGHSARVWACCFLP-N--RIITVGEDCT-CRVWGVN--GTQLEVYDEH 256 (967)
T ss_pred cCCcEEEEEecCcceeeeecccccccCccc--ccccceeEEEEecc-c--eeEEeccceE-EEEEecc--cceehhhhhh
Confidence 99999999999999999999988665322 34889999999997 4 9999999999 9999765 3445567777
Q ss_pred C-CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 255 E-GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 255 ~-~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
. ..++.++..++. ..++|++.|+.+++|++....
T Consensus 257 ~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 257 SGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred hhcceeEEEEcCCc-eEEEeeccCcchhhhhhhccc
Confidence 5 479999999998 599999999999999987755
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=6.4e-11 Score=102.68 Aligned_cols=222 Identities=14% Similarity=0.103 Sum_probs=132.6
Q ss_pred CCeeEEEeeecCCcccE--EEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 18 WPISTVAWSVRHDRKSR--LAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~--la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
..+.+-+|||| |+. ++..++ .++.-.||-.+..+++... + ....+.....+|+||| +.||..+
T Consensus 185 ~~~~sP~wSPD---G~~~~~~y~S~---~~g~~~I~~~~l~~g~~~~---l-t~~~g~~~~p~wSPDG-----~~Laf~s 249 (428)
T PRK01029 185 SLSITPTWMHI---GSGFPYLYVSY---KLGVPKIFLGSLENPAGKK---I-LALQGNQLMPTFSPRK-----KLLAFIS 249 (428)
T ss_pred CCcccceEccC---CCceEEEEEEc---cCCCceEEEEECCCCCceE---e-ecCCCCccceEECCCC-----CEEEEEE
Confidence 45677899999 875 333442 3455555556665555443 1 2344556678999999 5665433
Q ss_pred ---C--c--EEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEE--ECCC-Ceeeeeee
Q 040307 96 ---D--S--LRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIW--DIDR-EILETQLV 163 (339)
Q Consensus 96 ---~--~--i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~--d~~~-~~~~~~~~ 163 (339)
+ . +.+|++..+.. .......... ......+|+| +++.|+..+ .+|...+| ++.. +.....+.
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~-----~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNEAF-----GTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecCCC-----CCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 1 3 44467665321 1222222221 2345679998 898777665 45654555 4432 22334444
Q ss_pred ccCCceeEEEec-CCcEEEEEeCC---CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-C-CeEE
Q 040307 164 AHDREVYDISWG-GFNVFASVSGD---CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-S-NKVV 237 (339)
Q Consensus 164 ~~~~~v~~~~~~-~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~-~~i~ 237 (339)
.+...+....|+ +++.|+..+.+ ..|.+||+.+++.... ... ...+....|+| +++.|+....+ + ..|+
T Consensus 324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~---~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTS---PENKESPSWAI-DSLHLVYSAGNSNESELY 398 (428)
T ss_pred cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCC---CCCccceEECC-CCCEEEEEECCCCCceEE
Confidence 445567788999 78888776543 4689999988764332 221 23567789998 77777654432 2 2488
Q ss_pred EEecCCCCCceEEEecCCCCeeEEEeccCC
Q 040307 238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLY 267 (339)
Q Consensus 238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~ 267 (339)
++|+.. ++ ...+....+.+...+|+|..
T Consensus 399 ~vdl~~-g~-~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLIT-KK-TRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCC-CC-EEEeecCCCcccCceecCCC
Confidence 888875 33 34444445667888998864
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=6.5e-11 Score=102.29 Aligned_cols=280 Identities=16% Similarity=0.228 Sum_probs=186.3
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccc-----------eeeEeecCCCCceEEEEcCCCCCC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSA-----------DNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
....|++|+.. ..++|+|+ .||.+++..+..++..... ...+ .+|+..|.-+.|+.+.
T Consensus 15 vkL~c~~WNke---~gyIAcgG----~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~~--- 83 (1189)
T KOG2041|consen 15 VKLHCAEWNKE---SGYIACGG----ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNENN--- 83 (1189)
T ss_pred ceEEEEEEccc---CCeEEecc----ccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEecccc---
Confidence 46789999999 99999999 8999999877654432221 1122 5899999999999888
Q ss_pred CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-eee
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET-QLV 163 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~ 163 (339)
+-|.++. + .|.+|-+-.+.+-....-...+ +.|.+++|+. +|..|+....||.|.+-.++..+... .++
T Consensus 84 --QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnK-----SvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLk 155 (1189)
T KOG2041|consen 84 --QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNK-----SVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELK 155 (1189)
T ss_pred --ccccccCCCceEEEEeeecccHHHHHhhCcCc-----cEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcc
Confidence 6666654 3 9999999887632111112223 7899999996 99999999999999998876554221 222
Q ss_pred ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcce-------e-eEEeCCCCCCCeEEEEEe-------cCCCCeEE
Q 040307 164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERS-------T-IIYENPVQDCPLLRLEWN-------KADPRFMA 227 (339)
Q Consensus 164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-------~-~~~~~~~~~~~v~~~~~~-------p~~~~~l~ 227 (339)
......+.|+ +...++.+-..|.+.+||....-.. . ...........+..+.|. |.+.-.|+
T Consensus 156 --g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la 233 (1189)
T KOG2041|consen 156 --GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA 233 (1189)
T ss_pred --hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence 1234578899 7777777778899999998754211 0 011111122346667774 23556888
Q ss_pred EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC---------cEEEEEecCCCCCCCCCCCC
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS---------RALIWEVVGPGYRSGNGGPS 298 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------~v~iwd~~~~~~~~~~~~~~ 298 (339)
++-.+|. +.|..-.+...|+..-. .-.+..+.|+++| .+|+.++.+. .|.+|..-..-
T Consensus 234 vcy~nGr-~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i--------- 300 (1189)
T KOG2041|consen 234 VCYANGR-MQIMRSENDPEPVVVDT--GMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHI--------- 300 (1189)
T ss_pred EEEcCce-ehhhhhcCCCCCeEEec--ccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhh---------
Confidence 8888888 88876665555544333 3678899999999 5999988652 33333222111
Q ss_pred CcccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
.-...-....|++++|-..|- =++...|+.|.+
T Consensus 301 ----~gtlkvpg~~It~lsWEg~gL-riA~Avdsfiyf 333 (1189)
T KOG2041|consen 301 ----VGTLKVPGSCITGLSWEGTGL-RIAIAVDSFIYF 333 (1189)
T ss_pred ----eEEEecCCceeeeeEEcCCce-EEEEEecceEEE
Confidence 112233456799999987763 345556666654
No 262
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=1.6e-10 Score=97.70 Aligned_cols=184 Identities=12% Similarity=0.097 Sum_probs=125.1
Q ss_pred CEE-EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307 137 RRV-ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL 214 (339)
Q Consensus 137 ~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 214 (339)
+++ ++-..++.|.+.|..+.+.+..+......-..+.++ +++++++++.||.|.++|+.+.+....+..+ ....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----GNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----CCcc
Confidence 444 455568999999999999999987654444456788 7999999999999999999999976666554 4678
Q ss_pred EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
.++++| +|++++++......+.++|.++ .++++.+... ...+.++..+|..+.++++--+.+.|.+.|+..
T Consensus 82 ~i~~s~-DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 82 GIAVSP-DGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEE---TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred eEEEcC-CCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 899998 9999988876555599999987 5667766542 346778888898854555555568888878776
Q ss_pred CCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEE-ecCCeEEEEe
Q 040307 288 PGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAI-AFVNKLQLLK 338 (339)
Q Consensus 288 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~-~~d~~v~~w~ 338 (339)
.. .+. ..........+..|+|++++++++ ..++.+-+++
T Consensus 160 ~~------------~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 160 PK------------NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp SS------------CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred cc------------ccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 65 122 333445567889999999987765 4566676665
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=7.2e-12 Score=97.74 Aligned_cols=259 Identities=14% Similarity=0.244 Sum_probs=170.0
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC-CcccceeeE-----------eecCCCCceEEEEcC
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET-SDFSADNRL-----------IFDHPYTPTNIAFFP 81 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-~~~~~~~~~-----------~~~~~~~v~~l~~~~ 81 (339)
....+.|+++.|... |.+||+|. ..|.|.+|.-.... .+......+ ...-...|..+.|..
T Consensus 23 ~tead~ItaVefd~t---g~YlatGD----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 23 STEADKITAVEFDET---GLYLATGD----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred ccccceeeEEEeccc---cceEeecC----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence 344578999999999 99999999 78999996544322 111110011 012245688999988
Q ss_pred CCCCCCCCeEEEeCC-cEEEEeecCCcceeE-------------------------EEeecCC-----------CccCCC
Q 040307 82 SEETLNPDIVATSGD-SLRLWEIHDDRTELK-------------------------SLLNSNK-----------TSEFSS 124 (339)
Q Consensus 82 ~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~-------------------------~~~~~~~-----------~~~~~~ 124 (339)
++.+ ..+|+++.+ +|++|.+.....+.+ -.+..|. ...|.-
T Consensus 96 ~t~r--~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 96 DTGR--NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred CCCc--ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 7632 267888887 999998865410000 0000010 123336
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccC-----CceeEEEecC--CcEEEEEeCCCcEEEEEC
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHD-----REVYDISWGG--FNVFASVSGDCSVRVFDL 194 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~-----~~v~~~~~~~--~~~l~~~~~d~~i~i~d~ 194 (339)
.|+++.|+. +...++++ .|-.|.+|+++-.. .+.-++.|. .-|++..|+| .+.++-.+..|.|++-|+
T Consensus 174 hiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 174 HINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred EeeeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 788999986 76777664 57889999986433 222233333 4578889993 778888889999999999
Q ss_pred CCCccee---eEEeC----------CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC-----
Q 040307 195 RDKERST---IIYEN----------PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG----- 256 (339)
Q Consensus 195 ~~~~~~~---~~~~~----------~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~----- 256 (339)
|+..... .+++. ......|..+.|++ +|+++++-... .+++||++....|+.+...|..
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl--tvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL--TVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc--eEEEEecccccCCceeechHHHHHHHH
Confidence 9653111 11110 01235678899997 99999875544 3999999998899998866532
Q ss_pred -------Ce---eEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 257 -------SV---NGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 257 -------~v---~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
.| ..+.|+-+. +.+++|+..+...+|-..+
T Consensus 329 ~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HhhhhccceeeeEEEEecCCc-ccccccccccceeeecccc
Confidence 33 357888887 5888999888888876433
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=3.6e-10 Score=93.94 Aligned_cols=287 Identities=16% Similarity=0.135 Sum_probs=177.1
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeec-----------cccCCeEEEEecCCCCCcccceeeEeecCCCCce-EE
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFL-----------EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT-NI 77 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~-----------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~-~l 77 (339)
.+.++.| ..|..+.|||. +++|.+=... ...++.+.+|| ..++.+...... .....-.+ -+
T Consensus 65 ~l~~~~~-~~V~~~~fSP~---~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd--~~sg~iv~sf~~-~~q~~~~Wp~~ 137 (561)
T COG5354 65 KLVRFRH-PDVKYLDFSPN---EKYLVTWSREPIIEPEIEISPFTSKNNVFVWD--IASGMIVFSFNG-ISQPYLGWPVL 137 (561)
T ss_pred heeeeec-CCceecccCcc---cceeeeeccCCccChhhccCCccccCceeEEe--ccCceeEeeccc-cCCccccccee
Confidence 3444444 45888999999 9999886541 11234577755 444444431111 11222234 78
Q ss_pred EEcCCCCCCCCCeEEEeC-CcEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEE-----EeCCCeE
Q 040307 78 AFFPSEETLNPDIVATSG-DSLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVAT-----CSVDTTC 148 (339)
Q Consensus 78 ~~~~~~~~~~~~~la~~~-~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~d~~v 148 (339)
.|+-+. .++|=-. +.++|+++ ++. ..+...++. ..|....|+|. ++..|+. .+.++.+
T Consensus 138 k~s~~D-----~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~-------~gi~dFsisP~~n~~~la~~tPEk~~kpa~~ 204 (561)
T COG5354 138 KFSIDD-----KYVARVVGSSLYIHEI-TDNIEEHPFKNLRP-------VGILDFSISPEGNHDELAYWTPEKLNKPAMV 204 (561)
T ss_pred eeeecc-----hhhhhhccCeEEEEec-CCccccCchhhccc-------cceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence 899988 6766554 49999997 332 122333332 56888999984 3344454 4567899
Q ss_pred EEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe-----------CCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307 149 VIWDIDREILETQLVAHDREVYDISWG-GFNVFASVS-----------GDCSVRVFDLRDKERSTIIYENPVQDCPLLRL 216 (339)
Q Consensus 149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 216 (339)
++|.+..+..+.+-.-....=..+.|+ .+++|+.-- ....++|++++....+... . -.++|...
T Consensus 205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~---~~~pVhdf 280 (561)
T COG5354 205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-D---LKDPVHDF 280 (561)
T ss_pred EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-c---ccccceee
Confidence 999998666544332222223456777 455543211 2357889999866644443 1 35799999
Q ss_pred EEecCCCCeEEEE-eeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC---CcEEEEEecCCCCCC
Q 040307 217 EWNKADPRFMATV-GMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD---SRALIWEVVGPGYRS 292 (339)
Q Consensus 217 ~~~p~~~~~l~~~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~v~iwd~~~~~~~~ 292 (339)
+|.|...++.++. -.... +.++|++. ... +......=+.+.|+|.+ ++++.++-| |.+-+||.....
T Consensus 281 ~W~p~S~~F~vi~g~~pa~-~s~~~lr~--Nl~--~~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf--- 351 (561)
T COG5354 281 TWEPLSSRFAVISGYMPAS-VSVFDLRG--NLR--FYFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRF--- 351 (561)
T ss_pred eecccCCceeEEecccccc-eeeccccc--ceE--EecCCcccccccccCcc-cEEEEecCCccccceEEeccCCce---
Confidence 9999444444443 34444 99999985 233 33345566788999999 588877754 789999987765
Q ss_pred CCCCCCCcccceeeecccceeEEEEecCCCCceEEEe------cCCeEEEEeC
Q 040307 293 GNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA------FVNKLQLLKV 339 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~------~d~~v~~w~v 339 (339)
.....-......-+.|+|+++++.+.. -|+.+.||++
T Consensus 352 ----------~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 352 ----------KVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ----------EEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 111111233455678999999776532 3889999986
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=3.1e-10 Score=95.87 Aligned_cols=189 Identities=22% Similarity=0.292 Sum_probs=145.2
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEc------C-------------CCCCEEEEEeCCCe
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWA------G-------------FDTRRVATCSVDTT 147 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------------~~~~~l~~~~~d~~ 147 (339)
.++|... | .++||+...++ ....+.... ...+..++..|. | .+...++-|...|.
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~--~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQ--LQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred heEeecCCCCeEEEEEccCce--eeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 5777665 4 99999999886 333332211 011344444443 2 24467888999999
Q ss_pred EEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 148 CVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
|.+|+...++....+. .|.+.|.++.++ +-..|.+++.|+.+..|+............ .+..+.+++.+| ++.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~-D~~ 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISP-DGK 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcC-CCC
Confidence 9999999998777774 688999999999 788999999999999999998875444433 356788999998 799
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccC-----CCCeEEEEeCCCcEEEEEecCCC
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL-----YGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+++++.. |++||+.. .+.+..+.+|.++|+++.|--. |..+|.+...+..+.+|-+....
T Consensus 158 ~l~~as~~---ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 158 ILLTASRQ---IKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred EEEeccce---EEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 99988764 99999998 7789999999999999999887 64566666677888999887744
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1e-10 Score=98.69 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=145.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeec---cCCceeEEEec---------------------CCcEEEEEeCCCcEE
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVA---HDREVYDISWG---------------------GFNVFASVSGDCSVR 190 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~---------------------~~~~l~~~~~d~~i~ 190 (339)
...++|....||.+++||...++....+.. -++..++..|. +...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 568999999999999999988876555531 22334444443 124677888899999
Q ss_pred EEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCe
Q 040307 191 VFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRR 270 (339)
Q Consensus 191 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 270 (339)
+|+...++.... .....|.+.|.++.++. +-..|.+++.|.. +..|+... ...++........+.+++.+||+ +.
T Consensus 84 ~ys~~~g~it~~-~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~-v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~-~~ 158 (541)
T KOG4547|consen 84 LYSVAGGEITAK-LSTDKHYGNVNEILDAQ-RLGCIYSVGADLK-VVYILEKE-KVIIRIWKEQKPLVSSLCISPDG-KI 158 (541)
T ss_pred EEEecCCeEEEE-EecCCCCCcceeeeccc-ccCceEecCCcee-EEEEeccc-ceeeeeeccCCCccceEEEcCCC-CE
Confidence 999999885444 44346889999999984 8889999999998 99999987 66778888888899999999998 69
Q ss_pred EEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC-----CCceEEE-ecCCeEEEEe
Q 040307 271 LCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL-----ELDWIAI-AFVNKLQLLK 338 (339)
Q Consensus 271 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-----~~~l~~~-~~d~~v~~w~ 338 (339)
+++++ +.|++||+++.+ ....+.+|.++|.+++|--+ |.+++++ ..+..+-+|.
T Consensus 159 l~~as--~~ik~~~~~~ke------------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKE------------VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEecc--ceEEEEEccCce------------EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 99887 689999999988 33456689999999999887 6677754 4566677775
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.4e-09 Score=91.40 Aligned_cols=279 Identities=21% Similarity=0.278 Sum_probs=172.2
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-- 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-- 95 (339)
..=+-+.|||. |.||++-. ...|.+| ..+.-.... .+.|++ |.-+.|||.. ++|++-+
T Consensus 211 WTetyv~wSP~---GTYL~t~H-----k~GI~lW--GG~~f~r~~----RF~Hp~-Vq~idfSP~E-----kYLVT~s~~ 270 (698)
T KOG2314|consen 211 WTETYVRWSPK---GTYLVTFH-----KQGIALW--GGESFDRIQ----RFYHPG-VQFIDFSPNE-----KYLVTYSPE 270 (698)
T ss_pred ceeeeEEecCC---ceEEEEEe-----ccceeee--cCccHHHHH----hccCCC-ceeeecCCcc-----ceEEEecCC
Confidence 34567899999 99999988 6778894 433322222 367775 8999999999 8998843
Q ss_pred -----------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307 96 -----------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA 164 (339)
Q Consensus 96 -----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 164 (339)
+.++|||+.++. ..+.+....... ..-.-+.||- |++++|.-.. ..|.||+..+..++-.-.-
T Consensus 271 p~~~~~~d~e~~~l~IWDI~tG~--lkrsF~~~~~~~--~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Ksl 344 (698)
T KOG2314|consen 271 PIIVEEDDNEGQQLIIWDIATGL--LKRSFPVIKSPY--LKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSL 344 (698)
T ss_pred ccccCcccCCCceEEEEEccccc--hhcceeccCCCc--cccceEEecc-CCceeEEecc-ceEEEEecCceeeeccccc
Confidence 179999999997 555554421100 1222467984 9999998776 6789999766443322222
Q ss_pred cCCceeEEEecC-CcEEEEEeC-----CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--------
Q 040307 165 HDREVYDISWGG-FNVFASVSG-----DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG-------- 230 (339)
Q Consensus 165 ~~~~v~~~~~~~-~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------- 230 (339)
.-..|....|+| +++||--.. -..+.+-.+.+.+.....-. +.-.=..+.|-. +|.+|+.--
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk-~gdyLcvkvdR~tK~~~ 420 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQK-SGDYLCVKVDRHTKSKV 420 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccc---eeeeccEEEecc-CCcEEEEEEEeeccccc
Confidence 345688889995 444443221 12233444433332111100 111113355653 677776522
Q ss_pred --eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC--CCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307 231 --MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD--DSRALIWEVVGPGYRSGNGGPSGDVEPELC 306 (339)
Q Consensus 231 --~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (339)
.-.+ +.|+.++...-|+..+.- ...|...+|-|.|+++.+..+. ..++.+|.++.... .+.+.
T Consensus 421 ~g~f~n-~eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----------~~~lV 487 (698)
T KOG2314|consen 421 KGQFSN-LEIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----------KPSLV 487 (698)
T ss_pred cceEee-EEEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----------chhhh
Confidence 1123 778888876677776664 6789999999999644444433 35799999985331 12222
Q ss_pred ec-ccceeEEEEecCCCCceEEE---ecCCeEEEEeC
Q 040307 307 YQ-SMAEINVVRWSPLELDWIAI---AFVNKLQLLKV 339 (339)
Q Consensus 307 ~~-~~~~i~~~~~~p~~~~l~~~---~~d~~v~~w~v 339 (339)
.. .....+.+.|+|.|+.++.+ |..|.+.+++.
T Consensus 488 k~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 488 KELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred hhhcccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 21 22457889999999987754 45777888763
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=1.7e-09 Score=89.36 Aligned_cols=249 Identities=12% Similarity=0.051 Sum_probs=166.1
Q ss_pred CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEe-ecC---CCc
Q 040307 45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLL-NSN---KTS 120 (339)
Q Consensus 45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~-~~~---~~~ 120 (339)
+|.=.||..+.++..+.....+ | .-.+=..+.||+ +++...++.|.+||.++...+.+..- ... +..
T Consensus 245 eG~GnlYSvdldGkDlrrHTnF---t--dYY~R~~nsDGk----rIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~ 315 (668)
T COG4946 245 EGVGNLYSVDLDGKDLRRHTNF---T--DYYPRNANSDGK----RIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQP 315 (668)
T ss_pred cCccceEEeccCCchhhhcCCc---h--hccccccCCCCc----EEEEecCCcEEEeCCCcCcceeeecCCccccccccc
Confidence 6666677777777666542111 1 122333466774 56666677999999988753332211 111 111
Q ss_pred cCCCCEEEEE-EcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC-cEEEEECCCC
Q 040307 121 EFSSAITSFD-WAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC-SVRVFDLRDK 197 (339)
Q Consensus 121 ~~~~~i~~~~-~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~i~d~~~~ 197 (339)
.+..+..-+. |++.+|++++..+. |...|.+...+-.++ + ++...|.-..+. +++-++.|..|| .+-++|.++.
T Consensus 316 k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 316 KFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred cccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc
Confidence 1112222232 66668999998885 788888776654433 2 567778888887 777899999999 8999999998
Q ss_pred cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 198 ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
+...... .-+.|-++..+| +|++++++..... +.+.|+.+ +++...-+...+-|+.++|+|++ +++|-+--+
T Consensus 393 e~kr~e~----~lg~I~av~vs~-dGK~~vvaNdr~e-l~vididn-gnv~~idkS~~~lItdf~~~~ns-r~iAYafP~ 464 (668)
T COG4946 393 EVKRIEK----DLGNIEAVKVSP-DGKKVVVANDRFE-LWVIDIDN-GNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPE 464 (668)
T ss_pred eEEEeeC----CccceEEEEEcC-CCcEEEEEcCceE-EEEEEecC-CCeeEecccccceeEEEEEcCCc-eeEEEecCc
Confidence 7433322 237899999998 9999988777666 99999988 44333334446789999999999 699988766
Q ss_pred C----cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307 278 S----RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 278 g----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 326 (339)
| .|+++|+...+ ........+.=.+-+|.|++++|.
T Consensus 465 gy~tq~Iklydm~~~K-------------iy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 465 GYYTQSIKLYDMDGGK-------------IYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred ceeeeeEEEEecCCCe-------------EEEecCCcccccCcccCCCCcEEE
Confidence 5 69999999977 333333333445667888888755
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.37 E-value=4.1e-09 Score=98.93 Aligned_cols=248 Identities=14% Similarity=0.221 Sum_probs=156.7
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC-------------------------CCccc---------
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE-------------------------TSDFS--------- 61 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~-------------------------~~~~~--------- 61 (339)
.+.+|.+++|||| +..||..+ .++++.+..-+-+ .-.+.
T Consensus 119 vd~GI~a~~WSPD---~Ella~vT----~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~ 191 (928)
T PF04762_consen 119 VDSGILAASWSPD---EELLALVT----GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR 191 (928)
T ss_pred EcCcEEEEEECCC---cCEEEEEe----CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhh
Confidence 4679999999999 99999999 6888887542210 00000
Q ss_pred --ceeeEe------ecCCCCceEEEEcCCCCCCCCCeEEEeC-------C-cEEEEeecCCcceeEEEeecCCCccCCCC
Q 040307 62 --ADNRLI------FDHPYTPTNIAFFPSEETLNPDIVATSG-------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSA 125 (339)
Q Consensus 62 --~~~~~~------~~~~~~v~~l~~~~~~~~~~~~~la~~~-------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 125 (339)
..+... ....+.-..++|-.|| .++|+.+ . .++||+-+ +. ...+-+.-. +-
T Consensus 192 ~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG-----~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~-----gL 258 (928)
T PF04762_consen 192 QLRDPTVPKVDEGKLSWDDGRVRISWRGDG-----EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVD-----GL 258 (928)
T ss_pred hccCCCCCccccCccccCCCceEEEECCCC-----cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCC-----Cc
Confidence 000000 0133355688999999 8988764 1 78999876 32 332222211 22
Q ss_pred EEEEEEcCCCCCEEEEEeC---CCeEEEEECCC---CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc
Q 040307 126 ITSFDWAGFDTRRVATCSV---DTTCVIWDIDR---EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE 198 (339)
Q Consensus 126 i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~---~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~ 198 (339)
-.+++|.| .|++||+.-. ...|.+|.-+. ++....+......|..++|+ +++.|+..-.|. |.+|-..+-.
T Consensus 259 e~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 259 EGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred cCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 33789999 9999998765 35667776432 22222222345679999999 899999877665 9999887765
Q ss_pred ceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC----CCC----------------------------
Q 040307 199 RSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR----FPT---------------------------- 245 (339)
Q Consensus 199 ~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~----~~~---------------------------- 245 (339)
--.. .... .....+..+.|+|.+...|...+.++. +..++.. ...
T Consensus 337 WYLKqei~~-~~~~~~~~~~Wdpe~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~V 414 (928)
T PF04762_consen 337 WYLKQEIRF-SSSESVNFVKWDPEKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVV 414 (928)
T ss_pred EEEEEEEEc-cCCCCCCceEECCCCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCC
Confidence 2111 1111 122345559999987777877777666 5444332 110
Q ss_pred -Cce--EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 246 -NPV--VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 246 -~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.|+ ..+. -...|.+++|+++++ .+++-..||.+.+|......
T Consensus 415 PPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 415 PPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCC
Confidence 111 1122 246899999999984 69999999999999976654
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=3e-08 Score=82.34 Aligned_cols=260 Identities=8% Similarity=0.036 Sum_probs=154.5
Q ss_pred CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC---------C--cEEEEeecCCcceeEEEe
Q 040307 46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG---------D--SLRLWEIHDDRTELKSLL 114 (339)
Q Consensus 46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---------~--~i~iw~~~~~~~~~~~~~ 114 (339)
+.|.+ ++.++.+... .+..+ .....+ ++|+++ .++++.+ + .|.+||..+.+ .+..+
T Consensus 27 ~~v~V--iD~~~~~v~g--~i~~G--~~P~~~-~spDg~----~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i 93 (352)
T TIGR02658 27 TQVYT--IDGEAGRVLG--MTDGG--FLPNPV-VASDGS----FFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADI 93 (352)
T ss_pred ceEEE--EECCCCEEEE--EEEcc--CCCcee-ECCCCC----EEEEEeccccccccCCCCCEEEEEECccCc--EEeEE
Confidence 78999 5555555554 23222 233345 999995 4555555 3 99999999987 55555
Q ss_pred ecCCCcc--CCCCEEEEEEcCCCCCEEEEEe-C-CCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEE
Q 040307 115 NSNKTSE--FSSAITSFDWAGFDTRRVATCS-V-DTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVR 190 (339)
Q Consensus 115 ~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~-~-d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~ 190 (339)
......+ ....-..++++| ++++++... . +..|.+.|+.+++.+..+.- .+...-...++...+ .-+.||...
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~-~~~~Dg~~~ 170 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFF-MHCRDGSLA 170 (352)
T ss_pred ccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccE-EEeecCceE
Confidence 4321100 002334788998 999888776 3 68999999999998888764 222222333332222 334566655
Q ss_pred EEECCCCcceee----EEeCCCCCCCe-EEEEEecCCCCeEEEEeeCCCeEEEEecCCCC----CceEEEec-------C
Q 040307 191 VFDLRDKERSTI----IYENPVQDCPL-LRLEWNKADPRFMATVGMDSNKVVVLDIRFPT----NPVVVLSK-------H 254 (339)
Q Consensus 191 i~d~~~~~~~~~----~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~----~~~~~~~~-------~ 254 (339)
...+........ ++.. ...++ ..-.|.+.++.++.+... |. |.+.|+.... .++..+.. .
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~--~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHP--EDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred EEEecCCCceEEeeeeeecC--CccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccC
Confidence 544433222111 1110 00000 111445546777766555 77 9999964421 22222211 2
Q ss_pred CCCeeEEEeccCCCCeEEEEe----------CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC-
Q 040307 255 EGSVNGISWAPLYGRRLCSVA----------DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL- 323 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~- 323 (339)
.+.+.-++++|++. .++... ..+.|.++|..+.+ ......-...+..++++||++
T Consensus 247 P~g~q~ia~~~dg~-~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-------------vi~~i~vG~~~~~iavS~Dgkp 312 (352)
T TIGR02658 247 PGGWQQVAYHRARD-RIYLLADQRAKWTHKTASRFLFVVDAKTGK-------------RLRKIELGHEIDSINVSQDAKP 312 (352)
T ss_pred CCcceeEEEcCCCC-EEEEEecCCccccccCCCCEEEEEECCCCe-------------EEEEEeCCCceeeEEECCCCCe
Confidence 23444599999985 555532 22579999988877 444444566899999999998
Q ss_pred ceEEEe-cCCeEEEEeC
Q 040307 324 DWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 324 ~l~~~~-~d~~v~~w~v 339 (339)
.|++.. .++.|.++++
T Consensus 313 ~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDA 329 (352)
T ss_pred EEEEeCCCCCcEEEEEC
Confidence 777665 6788988874
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=9.2e-11 Score=91.68 Aligned_cols=247 Identities=15% Similarity=0.162 Sum_probs=165.1
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC--CcEEEEeecCCc---ceeEEEeecCCCc-------cCCCCEEEEEEcCC-CC
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG--DSLRLWEIHDDR---TELKSLLNSNKTS-------EFSSAITSFDWAGF-DT 136 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~--~~i~iw~~~~~~---~~~~~~~~~~~~~-------~~~~~i~~~~~~~~-~~ 136 (339)
....|+++.|...| .+||+|. +.|.+|.-+... .+....+++|..+ +....|..+.|... ..
T Consensus 25 ead~ItaVefd~tg-----~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDETG-----LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEecccc-----ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 45679999999999 8999997 388888765543 3344556666521 12246778888742 23
Q ss_pred CEEEEEeCCCeEEEEECCCC------------------------------------------eeeeee-eccCCceeEEE
Q 040307 137 RRVATCSVDTTCVIWDIDRE------------------------------------------ILETQL-VAHDREVYDIS 173 (339)
Q Consensus 137 ~~l~~~~~d~~v~i~d~~~~------------------------------------------~~~~~~-~~~~~~v~~~~ 173 (339)
..++..+.|.+|++|.+... .+.+.+ ..|...+.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 46777788999999987532 011112 34777788999
Q ss_pred ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC-----CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307 174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD-----CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247 (339)
Q Consensus 174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~ 247 (339)
++ +...++++ .|-.|.+|.+......-.+.....+. .-|++..|+|.....+.-.+..|. |++-|+|...-+
T Consensus 180 ~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~alc 257 (460)
T COG5170 180 FNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQSALC 257 (460)
T ss_pred ecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhhhhc
Confidence 98 66666665 57789999988765433333221122 357888999987788888888888 999999953211
Q ss_pred -----eEEE----------ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cc--
Q 040307 248 -----VVVL----------SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QS-- 309 (339)
Q Consensus 248 -----~~~~----------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~-- 309 (339)
+... ..-...|..+.|+++| +++++-+. .+|+|||....+ .|+... -|
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k------------~pikTi~~h~~ 323 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAK------------NPIKTIPMHCD 323 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEeccccc------------CCceeechHHH
Confidence 1111 1112468889999999 58877665 589999999987 333222 11
Q ss_pred ----------ccee---EEEEecCCCCceEEEecCCeEEEE
Q 040307 310 ----------MAEI---NVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 310 ----------~~~i---~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
...| ..+.||-+...+++++..+..-++
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 2223 458899888888888877766554
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.3e-09 Score=90.28 Aligned_cols=276 Identities=13% Similarity=0.182 Sum_probs=173.3
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe--
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-- 94 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-- 94 (339)
..++...++|++ |+++|++. +..+.|+++.... ... ..... .++++.|+|-+ .+|.+-
T Consensus 34 ~~~~~v~~~S~~---G~lfA~~~-----~~~v~i~~~~~~~--~~l----t~~~~-~~~~L~fSP~g-----~yL~T~e~ 93 (566)
T KOG2315|consen 34 SRPCNVFAYSNN---GRLFAYSD-----NQVVKVFEIATLK--VVL----CVELK-KTYDLLFSPKG-----NYLLTWEP 93 (566)
T ss_pred CCcceeEEEcCC---CcEEEEEc-----CCeEEEEEccCCc--EEE----Eeccc-eeeeeeecccc-----cccccccc
Confidence 345778899999 99999999 8999996655443 221 12223 78999999999 787652
Q ss_pred ---------CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307 95 ---------GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA 164 (339)
Q Consensus 95 ---------~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 164 (339)
+. .+.+|+++++. ....+.... ..-.+..|++ |.. +++=-..+.+++|++...+.... .-
T Consensus 94 ~~i~~~~~~~~pn~~v~~vet~~--~~s~~q~k~-----Q~~W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~~-kl 163 (566)
T KOG2315|consen 94 WAIYGPKNASNPNVLVYNVETGV--QRSQIQKKM-----QNGWVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQH-KL 163 (566)
T ss_pred cccccCCCCCCCceeeeeeccce--ehhheehhh-----hcCccccccc-chh-hhhhhhcceEEEEecCCccceee-ee
Confidence 11 68899999853 333333322 2225788886 544 33334457899999876442221 23
Q ss_pred cCCceeEEEecCC---cEEEE-----EeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC--C-
Q 040307 165 HDREVYDISWGGF---NVFAS-----VSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD--S- 233 (339)
Q Consensus 165 ~~~~v~~~~~~~~---~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--~- 233 (339)
|...|+.+.++++ ..+++ .+.-+.|+||..........+....--...=..+.|++-...+|+..+.| .
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 5678899999943 33332 34556899998873321111100000122345788987333344444333 2
Q ss_pred -------CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307 234 -------NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305 (339)
Q Consensus 234 -------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (339)
..+++.++.. ......+. ..++|.++.|+|++..+.++- -.-..+.|||++..- +.
T Consensus 244 n~SYYGEq~Lyll~t~g-~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--------------v~ 307 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQG-ESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--------------VF 307 (566)
T ss_pred CccccccceEEEEEecC-ceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--------------eE
Confidence 1388888772 33333333 378999999999995343333 356789999988743 33
Q ss_pred eecccceeEEEEecCCCCceEEEec---CCeEEEEeC
Q 040307 306 CYQSMAEINVVRWSPLELDWIAIAF---VNKLQLLKV 339 (339)
Q Consensus 306 ~~~~~~~i~~~~~~p~~~~l~~~~~---d~~v~~w~v 339 (339)
.+ ..++=+++-|+|.|++++.+|. -|.+.|||+
T Consensus 308 df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 308 DF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred eC-CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 33 3456689999999998776664 477999986
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.32 E-value=1.4e-09 Score=83.38 Aligned_cols=220 Identities=13% Similarity=0.053 Sum_probs=141.7
Q ss_pred CeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 89 DIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 89 ~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
.+||.||. .+.+|...+.+. .......+. ..|+-+.=.-.....+..++.|.++++.+++-+...... |.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~-h~~~cd~sn-----n~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~ 156 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG-HLYQCDVSN-----NDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HN 156 (344)
T ss_pred cEEEeccccceeeeecccCccc-ceeeecccc-----cchhhhhhhcccccceeeccCCcceeEEEEecCccccee--ec
Confidence 57788763 999999987652 222222222 222111110012234666788889988888655332222 33
Q ss_pred C--ceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307 167 R--EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 167 ~--~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~ 242 (339)
. .+.++.++ ++.++++.+....|..|.+....... .+...+. ...--+..|+. ....+|++..||. +.|||+|
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-~D~gF~~S~s~-~~~~FAv~~Qdg~-~~I~DVR 233 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-SDHGFYNSFSE-NDLQFAVVFQDGT-CAIYDVR 233 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-CCCceeeeecc-CcceEEEEecCCc-EEEEEec
Confidence 3 37888999 78999999999999999987665322 2233322 23445778885 8889999999999 9999999
Q ss_pred CCCCceEEE----ecCCCCeeEEEeccCCCC-eEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-----eeecccc-
Q 040307 243 FPTNPVVVL----SKHEGSVNGISWAPLYGR-RLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-----LCYQSMA- 311 (339)
Q Consensus 243 ~~~~~~~~~----~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~- 311 (339)
....|.... ..|.+.++.+.|+|-|.. +|+..-.-+.+.+.|+++... .+.+ ....|..
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~----------~q~I~i~~d~~~~~~tq 303 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN----------HQVIVIPDDVERKHNTQ 303 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce----------eeEEecCcccccccccc
Confidence 877665433 358899999999987643 334444457899999999871 1111 2223333
Q ss_pred eeEEEEecCCCCceEEEe
Q 040307 312 EINVVRWSPLELDWIAIA 329 (339)
Q Consensus 312 ~i~~~~~~p~~~~l~~~~ 329 (339)
.|..-.|+.++..+....
T Consensus 304 ~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 304 HIFGTNFNNENESNDVKN 321 (344)
T ss_pred ccccccccCCCccccccc
Confidence 377777777766544433
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=2.3e-11 Score=114.46 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=149.2
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
+-..|.++.=+|.. .+.++|+ | .+++|....++ .+..++.-. . ..|+.+.|+. .|+.+..+..||.
T Consensus 2207 ~v~~v~r~~sHp~~-----~~Yltgs~dgsv~~~~w~~~~--~v~~~rt~g---~-s~vtr~~f~~-qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-----PYYLTGSQDGSVRMFEWGHGQ--QVVCFRTAG---N-SRVTRSRFNH-QGNKFGIVDGDGD 2274 (2439)
T ss_pred ccCceeeecCCCCC-----ceEEecCCCceEEEEeccCCC--eEEEeeccC---c-chhhhhhhcc-cCCceeeeccCCc
Confidence 34556777777877 6667776 5 99999998877 444444321 1 6889999995 9999999999999
Q ss_pred EEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeC---CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 148 CVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSG---DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
+.+|... .++....+.|.....++.|- +..+++++. ++.+.+||.--......+... |.+.++++++.| ..+
T Consensus 2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi-~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~--H~~gaT~l~~~P-~~q 2349 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFI-GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC--HDGGATVLAYAP-KHQ 2349 (2439)
T ss_pred eeecccC-CcceeccccCCccccceeee-ehhhhccccCCCCCcccchhcccCcccceeeee--cCCCceEEEEcC-cce
Confidence 9999986 66777888899999999998 467777754 688999998766544444444 888999999999 889
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+|++|+.+|. |++||++. .+.++.++. +. .. .++++|+..|.++||++....
T Consensus 2350 llisggr~G~-v~l~D~rq-rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2350 LLISGGRKGE-VCLFDIRQ-RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEEecCCcCc-EEEeehHH-HHHHHHhhh---------hh-hh-heeeccCcccceEEEEccccc
Confidence 9999999999 99999997 555544443 44 33 589999999999999998866
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=9.7e-10 Score=95.96 Aligned_cols=235 Identities=13% Similarity=0.167 Sum_probs=168.5
Q ss_pred CceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-----------CCCEEE
Q 040307 73 TPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-----------DTRRVA 140 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~l~ 140 (339)
.-.++.|+|.| ++|-|++ .|.+-|..+-+ .+..++.|+ ..|+.+.|.|. ..-+||
T Consensus 17 N~~A~Dw~~~G------LiAygshslV~VVDs~s~q--~iqsie~h~-----s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 17 NRNAADWSPSG------LIAYGSHSLVSVVDSRSLQ--LIQSIELHQ-----SAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred cccccccCccc------eEEEecCceEEEEehhhhh--hhhccccCc-----cceeEEEeccCCCchhccCccccceeEE
Confidence 36788999998 8898887 99999988776 888888888 89999999872 123678
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec---C-C-cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307 141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG---G-F-NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLR 215 (339)
Q Consensus 141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~---~-~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 215 (339)
++...|.|.+||...+..+..+..|.+++.+++|- + . ..|++-.....+.+|+..+++. +...........+
T Consensus 84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYDYSHEILSC 160 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccccCCcceee
Confidence 88889999999999988888888899999999997 2 3 6778888889999999999873 3333233456677
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCC---CceEEEe---cCCC-------------------------CeeEEEec
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPT---NPVVVLS---KHEG-------------------------SVNGISWA 264 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~---~~~~~~~---~~~~-------------------------~v~~~~~~ 264 (339)
+.+.|.+.+.+..-+..|. +.+-+.-... .+.+.++ .|.. ....++|+
T Consensus 161 f~~DPfd~rh~~~l~s~g~-vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGF-VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeCCCCcceEEEEccCce-EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 9999988888888777776 6665543211 1222221 1111 12246788
Q ss_pred cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCC--CceEEEecCCeEEEEe
Q 040307 265 PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLE--LDWIAIAFVNKLQLLK 338 (339)
Q Consensus 265 p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~--~~l~~~~~d~~v~~w~ 338 (339)
|.-. -++-......+.|+|++... ++... -..+.+.-+.|-|+. ..|++.-.||.+.+|.
T Consensus 240 p~~r-n~lfi~~prellv~dle~~~-------------~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 240 PHWR-NILFITFPRELLVFDLEYEC-------------CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hhhh-ceEEEEeccceEEEcchhhc-------------eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 8874 44444456789999999877 44222 223334445555654 4588899999999985
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.7e-10 Score=98.55 Aligned_cols=231 Identities=14% Similarity=0.188 Sum_probs=162.0
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc-------------ceeEEEeecCCCccCCCCEEEEEEcC
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR-------------TELKSLLNSNKTSEFSSAITSFDWAG 133 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~-------------~~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (339)
+......|++|+... .++|+|| + .+++..+.+.. ...-+++.+|. ..|.-+.|+.
T Consensus 12 PnnvkL~c~~WNke~-----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~-----~sV~vvTWNe 81 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKES-----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN-----ASVMVVTWNE 81 (1189)
T ss_pred CCCceEEEEEEcccC-----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc-----ceEEEEEecc
Confidence 445668999999988 8999998 4 88888776542 11234566676 9999999996
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeeee--eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC
Q 040307 134 FDTRRVATCSVDTTCVIWDIDREILETQL--VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD 210 (339)
Q Consensus 134 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 210 (339)
+.+.|-++..+|.|.+|-+-.+.-...+ ...++.|.+++|+ +|..+...-.||.|.+=.+..++.-..-.. .
T Consensus 82 -~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk----g 156 (1189)
T KOG2041|consen 82 -NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK----G 156 (1189)
T ss_pred -ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc----h
Confidence 7888999999999999999777532222 2345678999999 999999999999988877766553222222 2
Q ss_pred CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC------ceEE----EecCCCCeeEEEec--------cCCCCeEE
Q 040307 211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN------PVVV----LSKHEGSVNGISWA--------PLYGRRLC 272 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~------~~~~----~~~~~~~v~~~~~~--------p~~~~~l~ 272 (339)
.....+.|++ +.+.++.+-.+|. +++||...... +... +......|..+.|. |+-+ .|+
T Consensus 157 ~~l~hv~ws~-D~~~~Lf~~ange-~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~la 233 (1189)
T KOG2041|consen 157 QLLAHVLWSE-DLEQALFKKANGE-THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLA 233 (1189)
T ss_pred heccceeecc-cHHHHHhhhcCCc-EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEE
Confidence 3456789998 7777777777777 99999764211 1011 11112235566664 4665 899
Q ss_pred EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 273 SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 273 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
.+-.+|.+.|-.-.+.. +|.... ..-.|..+.|+++|..|+.++.
T Consensus 234 vcy~nGr~QiMR~eND~------------~Pvv~d-tgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 234 VCYANGRMQIMRSENDP------------EPVVVD-TGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred EEEcCceehhhhhcCCC------------CCeEEe-cccEeecceecCCCcEEEEccC
Confidence 99999999987666655 354443 3367899999999986555553
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=5.5e-11 Score=112.07 Aligned_cols=185 Identities=14% Similarity=0.196 Sum_probs=141.6
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
..|.++.-+| ...+.++|+.||.|++|.-..+..+..+. .-...|+.+.|+ .|+.+..+..||.+.+|.... + +.
T Consensus 2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k-~~ 2285 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-K-PY 2285 (2439)
T ss_pred CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-c-ce
Confidence 5677788887 67889999999999999988887666663 233789999999 899999999999999999882 2 22
Q ss_pred eEEeCCCCCCCeEEEEEecCCCCeEEEEee--CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307 202 IIYENPVQDCPLLRLEWNKADPRFMATVGM--DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR 279 (339)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 279 (339)
.-. ..|......+.|-. ..+++++. |++.+.+||.-.+...-.....|.+.++++++-|.. .+|++|+.+|.
T Consensus 2286 ~s~--qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr~G~ 2359 (2439)
T KOG1064|consen 2286 TSW--QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGRKGE 2359 (2439)
T ss_pred ecc--ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCCcCc
Confidence 223 33777788888863 56666532 333499999876554444448899999999999998 69999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 280 ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 280 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|++||++..+ ....+ +. ++ ...++++++..|.++||++
T Consensus 2360 v~l~D~rqrq-------------l~h~~----~~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2360 VCLFDIRQRQ-------------LRHTF----QA----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred EEEeehHHHH-------------HHHHh----hh----hh-hhheeeccCcccceEEEEc
Confidence 9999999876 22111 11 55 5567888999999999985
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=1.1e-08 Score=84.74 Aligned_cols=275 Identities=13% Similarity=0.122 Sum_probs=169.7
Q ss_pred cccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C--cEEEEeecCCc
Q 040307 31 RKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D--SLRLWEIHDDR 107 (339)
Q Consensus 31 ~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~--~i~iw~~~~~~ 107 (339)
+|+++|..+ .|+..| .+...+-..+ .++...|.-..+..+. .-++.|. | .+-|++.++++
T Consensus 331 ~Gd~ia~VS-----RGkaFi--~~~~~~~~iq-----v~~~~~VrY~r~~~~~-----e~~vigt~dgD~l~iyd~~~~e 393 (668)
T COG4946 331 NGDYIALVS-----RGKAFI--MRPWDGYSIQ-----VGKKGGVRYRRIQVDP-----EGDVIGTNDGDKLGIYDKDGGE 393 (668)
T ss_pred CCcEEEEEe-----cCcEEE--ECCCCCeeEE-----cCCCCceEEEEEccCC-----cceEEeccCCceEEEEecCCce
Confidence 488999988 688888 5554444433 6888889999998887 4555554 2 99999999885
Q ss_pred ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC
Q 040307 108 TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD 186 (339)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 186 (339)
...+...- +.|.++..+| +++.++.+.....+.+.|+.++.....-+...+-|+.+.|+ ++.++|-+--+
T Consensus 394 ---~kr~e~~l-----g~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 394 ---VKRIEKDL-----GNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred ---EEEeeCCc-----cceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc
Confidence 33444444 7899999998 99999999999999999999998655545667789999999 68888876555
Q ss_pred ----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-------CCeEEEEecCCCCCceE------
Q 040307 187 ----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-------SNKVVVLDIRFPTNPVV------ 249 (339)
Q Consensus 187 ----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------~~~i~i~d~~~~~~~~~------ 249 (339)
..|+++|+..++......+ ...=.+-+|.| ++++|..-+.. .. +.-+....-.+|..
T Consensus 465 gy~tq~Iklydm~~~Kiy~vTT~----ta~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv-~fnf~f~~vskPylv~L~~g 538 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIYDVTTP----TAYDFSPAFDP-DGRYLYFLSARSLDPSNDRV-IFNFSFQRVSKPYLVVLGRG 538 (668)
T ss_pred ceeeeeEEEEecCCCeEEEecCC----cccccCcccCC-CCcEEEEEeccccCCCCCee-EEEEEEeeeccceEEEecCC
Confidence 4699999998774333222 22334567887 77766544322 11 11111111111110
Q ss_pred ----------EEecC---------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC--CCCCC-Ccccc----
Q 040307 250 ----------VLSKH---------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG--NGGPS-GDVEP---- 303 (339)
Q Consensus 250 ----------~~~~~---------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~-~~~~~---- 303 (339)
..... ...+.-+-..+ +....+++-.+|.|.++...-...... .+.+. +.++.
T Consensus 539 ~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydle 617 (668)
T COG4946 539 YYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLE 617 (668)
T ss_pred CCChhhcCchhcCccccceehhhhcccccccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecc
Confidence 00000 01111111112 223455666677777776654331000 00000 00000
Q ss_pred -eeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 304 -ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 304 -~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.....-...+.++..|+|+..++. -.|+.+++++|
T Consensus 618 tkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~v 653 (668)
T COG4946 618 TKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDV 653 (668)
T ss_pred hhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEec
Confidence 001122457899999999987766 89999999985
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.25 E-value=8.6e-09 Score=79.19 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=140.1
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCccee
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTEL 110 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~ 110 (339)
..+||.|+ ..|...+|........... ...|...|.-+.=..+.+ ..++++..| ++++.+++.+....
T Consensus 84 c~~la~gG----~~g~fd~~~~~tn~~h~~~----cd~snn~v~~~~r~cd~~---~~~~i~sndht~k~~~~~~~s~~~ 152 (344)
T KOG4532|consen 84 CVTLADGG----ASGQFDLFACNTNDGHLYQ----CDVSNNDVTLVKRYCDLK---FPLNIASNDHTGKTMVVSGDSNKF 152 (344)
T ss_pred ccEEEecc----ccceeeeecccCcccceee----ecccccchhhhhhhcccc---cceeeccCCcceeEEEEecCcccc
Confidence 56888887 7999999777654443332 133444333222111211 045566666 99999888764222
Q ss_pred EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe--eee-eeeccCCceeEEEec-CCcEEEEEeCC
Q 040307 111 KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI--LET-QLVAHDREVYDISWG-GFNVFASVSGD 186 (339)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d 186 (339)
...... -.+.++.+++ +++++++.+....|..|.+.... .+. .....++.-.+..|+ ....+|++..|
T Consensus 153 ~~h~~~-------~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 153 AVHNQN-------LTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred eeeccc-------cceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence 111111 2378899998 99999999999999999986542 222 222334455788899 78899999999
Q ss_pred CcEEEEECCCCcceeeE--EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE------ecCCC-C
Q 040307 187 CSVRVFDLRDKERSTII--YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL------SKHEG-S 257 (339)
Q Consensus 187 ~~i~i~d~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~------~~~~~-~ 257 (339)
|++.|||+|....+... ...+.|.+.++.+.|+|...--|+.-++.-..+.+.|+|........+ ..|.. .
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ 304 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQH 304 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccc
Confidence 99999999987644332 334568899999999983333333333333349999999854322211 12222 3
Q ss_pred eeEEEeccCCCCeEEEEe
Q 040307 258 VNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 258 v~~~~~~p~~~~~l~~~~ 275 (339)
|..-.|+.+++ -+.+.+
T Consensus 305 ifgt~f~~~n~-s~~v~~ 321 (344)
T KOG4532|consen 305 IFGTNFNNENE-SNDVKN 321 (344)
T ss_pred cccccccCCCc-cccccc
Confidence 66667777664 343433
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=1.6e-10 Score=93.22 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=116.3
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE--eCC
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT--SGD 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~--~~~ 96 (339)
.+..+..+|. +++||++. .+....++++......... .....-....+++.|..+.. ..+++ .+|
T Consensus 64 a~~~~~~s~~---~~llAv~~----~~K~~~~f~~~~~~~~~kl--~~~~~v~~~~~ai~~~~~~~----sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDS---GRLVAVAT----SSKQRAVFDYRENPKGAKL--LDVSCVPKRPTAISFIREDT----SVLVADKAGD 130 (390)
T ss_pred cccccccCCC---ceEEEEEe----CCCceEEEEEecCCCccee--eeEeecccCcceeeeeeccc----eEEEEeecCC
Confidence 4455567777 99999999 5777777777655432222 11233445556666666553 33333 234
Q ss_pred --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eccCCceeEEE
Q 040307 97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VAHDREVYDIS 173 (339)
Q Consensus 97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~~ 173 (339)
.+.+|....+ +...+-+|- +.+++++|+| |+++|+++..|..|++-.....-.+..+ -+|+.-|..++
T Consensus 131 ~~~~di~s~~~~---~~~~~lGhv-----Sml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 131 VYSFDILSADSG---RCEPILGHV-----SMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred ceeeeeeccccc---Ccchhhhhh-----hhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 7777777654 333445666 8999999998 9999999999999999877665555554 47999999999
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCccee
Q 040307 174 WGGFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 174 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
.-++..|++++.|++|++||+++++.+.
T Consensus 202 l~~~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 202 LTDNYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred eccCceeeecCCCCcEEEEecccCCccc
Confidence 9888889999999999999999998653
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=3.7e-08 Score=94.32 Aligned_cols=254 Identities=9% Similarity=0.081 Sum_probs=148.0
Q ss_pred eEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCc---------cCCCCEEEEEEcCCCCCEEEEEe
Q 040307 75 TNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTS---------EFSSAITSFDWAGFDTRRVATCS 143 (339)
Q Consensus 75 ~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~~ 143 (339)
..+++++.+. .++++-.+ .|+++|.... ....+.+.... ........+++++ +++.|+.+.
T Consensus 571 ~gvavd~~~g----~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaD 642 (1057)
T PLN02919 571 GKLAIDLLNN----RLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVAD 642 (1057)
T ss_pred ceEEEECCCC----eEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEe
Confidence 4678887542 56666553 8999998654 22222221100 0112356889987 666555544
Q ss_pred -CCCeEEEEECCCCeeeeeeecc-----------------CCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeE
Q 040307 144 -VDTTCVIWDIDREILETQLVAH-----------------DREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTII 203 (339)
Q Consensus 144 -~d~~v~i~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~ 203 (339)
..+.|+++|+.++. +.++.+- -.....+++++ +.++++.+.++.|++||..++......
T Consensus 643 t~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 643 TENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred CCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 45789999987764 3333110 11235788883 566777778899999998776532111
Q ss_pred EeC-----C------CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE------------EEecC------
Q 040307 204 YEN-----P------VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV------------VLSKH------ 254 (339)
Q Consensus 204 ~~~-----~------~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~------------~~~~~------ 254 (339)
... . ..-.....++++| +++.|+++..+...|++||+......+. .+...
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 000 0 0012456799998 6665554444433499999876331110 00000
Q ss_pred --CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCC-CCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307 255 --EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG-GPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 255 --~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
-....+++++++| .++++-..+++|++||..........+ +..+...-......-.....++++++|+.+++-+.+
T Consensus 801 ~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 801 VLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred hhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 1124689999999 588888899999999987755100000 000000000011122357789999999877777899
Q ss_pred CeEEEEeC
Q 040307 332 NKLQLLKV 339 (339)
Q Consensus 332 ~~v~~w~v 339 (339)
+.|++|++
T Consensus 880 n~Irvid~ 887 (1057)
T PLN02919 880 SLIRYLDL 887 (1057)
T ss_pred CEEEEEEC
Confidence 99999975
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.23 E-value=6.2e-08 Score=75.51 Aligned_cols=229 Identities=11% Similarity=0.056 Sum_probs=131.7
Q ss_pred EEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307 76 NIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID 154 (339)
Q Consensus 76 ~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 154 (339)
.++.+++| ++||.--| .|.|-..+++=...+......+ .....=+.++|+| |+.+||.+...|+|+++|+.
T Consensus 2 ~~~~~~~G-----k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpk--D~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~ 73 (282)
T PF15492_consen 2 HLALSSDG-----KLLAILQDQCIEIRSAKDDFSSIIGKCQVPK--DPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLM 73 (282)
T ss_pred ceeecCCC-----cEEEEEeccEEEEEeccCCchheeEEEecCC--CCCchheEEEECC-CCcEEEEEcCCCeEEEEecc
Confidence 35677888 89999988 6666665554222222222221 1114567899998 99999999999999999996
Q ss_pred CCeeeeeeec-------cCCceeEEEecC-------CcEEEEEeCCCcEEEEECCCC--c---ceeeEEeCCCCCCCeEE
Q 040307 155 REILETQLVA-------HDREVYDISWGG-------FNVFASVSGDCSVRVFDLRDK--E---RSTIIYENPVQDCPLLR 215 (339)
Q Consensus 155 ~~~~~~~~~~-------~~~~v~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~--~---~~~~~~~~~~~~~~v~~ 215 (339)
..+ +..+.. -...|..+.|.+ ...|++-..+|.++-|-+..+ + ....+.-.......|.+
T Consensus 74 g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 74 GSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred cce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence 533 333321 124566677762 235666777888887765321 1 22222233345678999
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeE-EEEeCCC------cEEEEEecCC
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRL-CSVADDS------RALIWEVVGP 288 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg------~v~iwd~~~~ 288 (339)
+.++| .-++|++|+.....-..+ .+....+++-..-.+.+.+. ++..+|+ +..+|.+-+.
T Consensus 153 ~vy~p-~h~LLlVgG~~~~~~~~s------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 153 AVYHP-KHRLLLVGGCEQNQDGMS------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred EEEcC-CCCEEEEeccCCCCCccc------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence 99998 667777776554300000 01111222222222222121 1222221 1123332222
Q ss_pred CCCCCCCCCCCccccee-eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 289 GYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 289 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
. ... .......|..|..||||..|++...+|.|.+|+|
T Consensus 220 ~-------------~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 220 K-------------FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred e-------------eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 1 111 1234667999999999998888999999999985
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=1.2e-08 Score=85.19 Aligned_cols=236 Identities=12% Similarity=0.173 Sum_probs=156.8
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--- 145 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--- 145 (339)
-.-++..+.|||.| .+|++..- .|.+|.-.... .+..+.. ..|..+.|+| ++++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G-----~~l~~~~~~~V~~~~g~~~~--~l~~~~~-------~~V~~~~fSP-~~kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSESPLG-----TYLFSEHAAGVECWGGPSKA--KLVRFRH-------PDVKYLDFSP-NEKYLVTWSREPII 95 (561)
T ss_pred cCcchhheeecCcc-----hheehhhccceEEccccchh--heeeeec-------CCceecccCc-ccceeeeeccCCcc
Confidence 56688999999999 89888876 99999987765 4455544 5799999999 99999985543
Q ss_pred ------------CeEEEEECCCCeeeeeeeccCCc--ee-EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCC
Q 040307 146 ------------TTCVIWDIDREILETQLVAHDRE--VY-DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQ 209 (339)
Q Consensus 146 ------------~~v~i~d~~~~~~~~~~~~~~~~--v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 209 (339)
..+.+||+.++..+..+.....+ .+ -+.|+ +++++|-. ....++++++...-....+... .
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l--r 172 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL--R 172 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhc--c
Confidence 35999999999988888655544 44 67888 66666655 3457999997332211111111 2
Q ss_pred CCCeEEEEEecC-CCCeEEEE-----eeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe--------
Q 040307 210 DCPLLRLEWNKA-DPRFMATV-----GMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-------- 275 (339)
Q Consensus 210 ~~~v~~~~~~p~-~~~~l~~~-----~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------- 275 (339)
...+....|+|. ++..|+.- +.... +++|.+.. ...+.+..-.+..-..+.|++.|..+|+-.-
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~-~~i~sIp~-~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAM-VRILSIPK-NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcE-EEEEEccC-CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence 256788899984 33344442 33444 89998875 4445444433344457889999853333211
Q ss_pred --CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe--cCCeEEEEe
Q 040307 276 --DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA--FVNKLQLLK 338 (339)
Q Consensus 276 --~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~--~d~~v~~w~ 338 (339)
.+..++|++++... ........++|.+++|.|.+..++..+ .+..+.+++
T Consensus 251 yfgesnLyl~~~~e~~-------------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 251 YFGESNLYLLRITERS-------------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred eeccceEEEEeecccc-------------cceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 23578888888555 222225678999999999988766543 445555544
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.4e-08 Score=87.59 Aligned_cols=211 Identities=10% Similarity=0.076 Sum_probs=122.8
Q ss_pred CCeeEEEeeecCCcccE-EEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307 18 WPISTVAWSVRHDRKSR-LAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG- 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~-la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~- 95 (339)
.......|+|+ ++. ++..++.+ ....|.+ ++..+++... + ....+......|+||++ .++.+.+
T Consensus 188 ~~~~~p~wSpD---G~~~i~y~s~~~-~~~~Iyv--~dl~tg~~~~---l-t~~~g~~~~~~~SPDG~----~la~~~~~ 253 (419)
T PRK04043 188 GLNIFPKWANK---EQTAFYYTSYGE-RKPTLYK--YNLYTGKKEK---I-ASSQGMLVVSDVSKDGS----KLLLTMAP 253 (419)
T ss_pred CCeEeEEECCC---CCcEEEEEEccC-CCCEEEE--EECCCCcEEE---E-ecCCCcEEeeEECCCCC----EEEEEEcc
Confidence 46778999999 884 77666311 1234555 5555555443 1 23455566788999994 3444443
Q ss_pred --C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC--eEEEEECCCCeeeeeeeccCCce
Q 040307 96 --D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--TCVIWDIDREILETQLVAHDREV 169 (339)
Q Consensus 96 --~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~~v 169 (339)
+ .|.++++.+++.+. +..+. .......|+| |++.|+..+. .+ .|.+.|+.+++..+... ....
T Consensus 254 ~g~~~Iy~~dl~~g~~~~---LT~~~-----~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~- 322 (419)
T PRK04043 254 KGQPDIYLYDTNTKTLTQ---ITNYP-----GIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN- 322 (419)
T ss_pred CCCcEEEEEECCCCcEEE---cccCC-----CccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc-
Confidence 2 78888887775322 22222 2223457998 8887777654 23 68888888776533332 1111
Q ss_pred eEEEec-CCcEEEEEeCC---------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEE
Q 040307 170 YDISWG-GFNVFASVSGD---------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVV 237 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~ 237 (339)
...|+ +++.|+..+.. ..|.+.|+.++..... ... .......|+| +|+.|+..+..+. .+.
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L-T~~----~~~~~p~~SP-DG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL-TAN----GVNQFPRFSS-DGGSIMFIKYLGNQSALG 395 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC-CCC----CCcCCeEECC-CCCEEEEEEccCCcEEEE
Confidence 24889 78877766654 3678888887763322 222 1233588999 7887766655544 255
Q ss_pred EEecCCCCCceEEEecCCCCeeEEE
Q 040307 238 VLDIRFPTNPVVVLSKHEGSVNGIS 262 (339)
Q Consensus 238 i~d~~~~~~~~~~~~~~~~~v~~~~ 262 (339)
+.++. +.....+....+.+...+
T Consensus 396 ~~~l~--g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 396 IIRLN--YNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EEecC--CCeeEEeecCCCccCCCC
Confidence 55554 333344444444444433
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.22 E-value=3.9e-10 Score=86.00 Aligned_cols=198 Identities=14% Similarity=0.080 Sum_probs=125.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec-CCcEEEEEe-----CCCcEEEEECCCCcceeeEEeCC
Q 040307 135 DTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG-GFNVFASVS-----GDCSVRVFDLRDKERSTIIYENP 207 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~ 207 (339)
.++.++++..||.+.+++.+.-. ....+......-.+.++. .++.+.++. .-+..+.|+++..+.......
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-- 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-- 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--
Confidence 56789999999999999976521 111111111111222333 344444432 124566777776553222222
Q ss_pred CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 208 VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 208 ~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
....|.+++-+|...+++++|+.+|. +-+||++....|...+..|+.+++.+-|+|..+..|+++++||.+.-||..+
T Consensus 178 -~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 178 -ALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -ccccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 22348999999977778888888888 9999999988888889999999999999998888999999999999999884
Q ss_pred CCC--CCCCC--CCCCcccce----ee----ecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 288 PGY--RSGNG--GPSGDVEPE----LC----YQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 288 ~~~--~~~~~--~~~~~~~~~----~~----~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
... .+... .+.-...|. .+ ..-...|+++.. -|+.+++++.-+.|++++
T Consensus 256 ~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 256 TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ceEEecCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 321 00000 000000011 00 011234555554 456789998888888875
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=7.4e-08 Score=92.28 Aligned_cols=247 Identities=12% Similarity=0.097 Sum_probs=150.5
Q ss_pred eEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee----------EeecCCCCceEEEEcCCCCCCCCCe
Q 040307 21 STVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR----------LIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 21 ~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~----------~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
..+++++. ++.++++-. .++.|++++.+ +........ +....-.....+++.+++ ..
T Consensus 571 ~gvavd~~--~g~lyVaDs----~n~rI~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g-----n~ 637 (1057)
T PLN02919 571 GKLAIDLL--NNRLFISDS----NHNRIVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK-----NL 637 (1057)
T ss_pred ceEEEECC--CCeEEEEEC----CCCeEEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC-----CE
Confidence 46788876 144444444 57889996643 322211000 000112246889999987 54
Q ss_pred -EEEeC-C-cEEEEeecCCcceeEEEeecCCCc------------cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 040307 91 -VATSG-D-SLRLWEIHDDRTELKSLLNSNKTS------------EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR 155 (339)
Q Consensus 91 -la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 155 (339)
+++-. + .|+++|+.++. +.++.+.... .....-..++++|.++.++++.+.++.|++||..+
T Consensus 638 LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 44433 3 89999987764 3333221000 00023357999985566777777889999999877
Q ss_pred Ceeeeeeecc---------------CCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEE----------eCCC
Q 040307 156 EILETQLVAH---------------DREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIY----------ENPV 208 (339)
Q Consensus 156 ~~~~~~~~~~---------------~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~ 208 (339)
+... .+.+. -.....|+++ +++ ++++-+.++.|++||+.++....... ....
T Consensus 715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 6532 22111 1234578898 555 56666677999999998765321110 0000
Q ss_pred --------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC--------------CCCeeEEEeccC
Q 040307 209 --------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH--------------EGSVNGISWAPL 266 (339)
Q Consensus 209 --------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--------------~~~v~~~~~~p~ 266 (339)
.-.....++++| +|+++++-..++. |++||... .. +..+.+. -.....++++++
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~r-IrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHK-IKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred CCCchhhhhccCCceeeEeC-CCcEEEEECCCCE-EEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 011346889997 7887777777777 99999875 22 2333221 125678999999
Q ss_pred CCCeEEEEeCCCcEEEEEecCCC
Q 040307 267 YGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 267 ~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
| +++++-+.++.|++||+.+..
T Consensus 870 G-~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 870 G-RLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred C-CEEEEECCCCEEEEEECCCCc
Confidence 9 588888899999999998764
No 287
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.18 E-value=1.7e-09 Score=96.12 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=134.4
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
..++-|+ . .+..+|+++.+ ..+...-.. +.|+-|+. +++++.+|...|+|.+-|.++.+.+.++.+|+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~--e~r~~~v~a-----~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEK--ETRTTNVSA-----SGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred cceeecchhhheeeeecccce--eeeeeeccC-----CceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 4455555 2 78888888775 333333222 34666665 67899999999999999999999999999999
Q ss_pred CceeEEEecCCcEEEEEeC---------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307 167 REVYDISWGGFNVFASVSG---------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV 237 (339)
Q Consensus 167 ~~v~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~ 237 (339)
+.|.++... |++|+++|. |.-|++||+|..+....+... ....-+.|+|.-...+++++..|. ..
T Consensus 218 ~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~----~~P~flrf~Psl~t~~~V~S~sGq-~q 291 (1118)
T KOG1275|consen 218 GSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP----YGPQFLRFHPSLTTRLAVTSQSGQ-FQ 291 (1118)
T ss_pred cceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----cCchhhhhcccccceEEEEecccc-ee
Confidence 999887766 889999886 556899999998755544332 223567889877788889899998 99
Q ss_pred EEecCCCCCc---eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 238 VLDIRFPTNP---VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 238 i~d~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
+-|......| +..+......+.++.+++++ ..|+.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 9994443333 33333334569999999999 5999999999999998
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.7e-10 Score=95.85 Aligned_cols=289 Identities=14% Similarity=0.146 Sum_probs=179.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccc---ceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS---ADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
|...|.+++--.+ .+.+++++ .|.+|++|.+..+..+.. ..-++ ..|..+|..+.|..+. +.++
T Consensus 734 H~~~iRai~AidN---ENSFiSAS----kDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~l-----r~i~ 800 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDN---ENSFISAS----KDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADL-----RSIA 800 (1034)
T ss_pred cHHHhHHHHhccc---ccceeecc----CCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeecc-----ceee
Confidence 5667777766556 77788888 799999999987765544 22233 5899999999999998 8999
Q ss_pred EeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeeeee-----ccC
Q 040307 93 TSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV-ATCSVDTTCVIWDIDREILETQLV-----AHD 166 (339)
Q Consensus 93 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~-----~~~ 166 (339)
++.+.|.+||.--+. ++........++....|.++.-- +...+ +-++...+|+++|.+..+-...++ +..
T Consensus 801 ScD~giHlWDPFigr--~Laq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 801 SCDGGIHLWDPFIGR--LLAQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eccCcceeecccccc--hhHhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 888899999976665 33322222111122344444321 33444 444788999999999887554443 334
Q ss_pred CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE-EecCCC
Q 040307 167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV-LDIRFP 244 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i-~d~~~~ 244 (339)
..+.+++.. .|++++.+-..|.|.+.|.|+++....... .+.....++- | ..+.|+....|.. +.+ |-.-.
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp---mecdllqlaa-p-sdq~L~~saldHs-laVnWhald- 949 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP---MECDLLQLAA-P-SDQALAQSALDHS-LAVNWHALD- 949 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc---ccchhhhhcC-c-hhHHHHhhcccce-eEeeehhcC-
Confidence 568889888 699999999999999999999874332211 1222223332 3 5566766666766 776 75433
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 324 (339)
+....+.+....+.. -...-|+ -|++....+.+.+|.-..... .......+......+..++++--|-...
T Consensus 950 gimh~q~kpppepah--flqsvgp-SLV~a~~Gn~lgVYad~a~~h------a~stitKiR~d~f~G~lTala~LPLN~a 1020 (1034)
T KOG4190|consen 950 GIMHLQDKPPPEPAH--FLQSVGP-SLVTAQNGNILGVYADSAELH------AESTITKIRPDEFPGTLTALAPLPLNCA 1020 (1034)
T ss_pred CeeeeccCCCCcchh--hhhccCc-eeEEeccCcEEEEEecchhhh------hhhhhccccccccCCccceeeeccccch
Confidence 211111111111110 1112343 677777777888884332220 0000111122234667888998898877
Q ss_pred eEEEecCCeEEEE
Q 040307 325 WIAIAFVNKLQLL 337 (339)
Q Consensus 325 l~~~~~d~~v~~w 337 (339)
++++...|.|++.
T Consensus 1021 fLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 1021 FLAGNEHGAIALL 1033 (1034)
T ss_pred hhccCCCCceeec
Confidence 8889888888763
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.16 E-value=8.6e-10 Score=84.14 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=98.8
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-------CcEEEEeec
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-------DSLRLWEIH 104 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-------~~i~iw~~~ 104 (339)
+..++++. .||.+.+++.+. .+.........|.+ -.+.+....+ .++.+++ |..++|+++
T Consensus 101 ~t~V~~~~----~dg~~~v~s~~~---~~~~~~~i~~~~~~-~as~~~~~~~-----~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 101 DNRVCIGY----ADGSLAVFSTDK---DLALMSRIPSIHSG-SASRKICRHG-----NSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred CCceEecC----CCceEEEEechH---HHhhhhhccccccc-ccccceeecc-----cEEecCCcceEeeccceeeeccc
Confidence 56788888 799999965443 11111111112221 2233344445 4555543 267777776
Q ss_pred CCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec--CCcEEE
Q 040307 105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG--GFNVFA 181 (339)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~~l~ 181 (339)
..+......... ..|.+++-+|...+++++|+.||.+.+||.+... +...+..|+.+++.+-|+ ++..|+
T Consensus 168 p~~t~~~~~~~~-------~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 168 PIKTLIPSKKAL-------DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred cccccccccccc-------ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 544222222222 4599999999778889999999999999998775 344567899999999999 588999
Q ss_pred EEeCCCcEEEEECCC
Q 040307 182 SVSGDCSVRVFDLRD 196 (339)
Q Consensus 182 ~~~~d~~i~i~d~~~ 196 (339)
+++.||.+.-||..+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999999875
No 290
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=1.1e-06 Score=73.19 Aligned_cols=255 Identities=9% Similarity=0.027 Sum_probs=141.9
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeec------CCCCc
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFD------HPYTP 74 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~v 74 (339)
+.+.+.+........-+ +||| ++.|.++.. .+..++.|.+||. .+.+... .+..+ .....
T Consensus 36 ~~~v~g~i~~G~~P~~~-~spD---g~~lyva~~~~~R~~~G~~~d~V~v~D~--~t~~~~~--~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNPV-VASD---GSFFAHASTVYSRIARGKRTDYVEVIDP--QTHLPIA--DIELPEGPRFLVGTYP 107 (352)
T ss_pred CCEEEEEEEccCCCcee-ECCC---CCEEEEEeccccccccCCCCCEEEEEEC--ccCcEEe--EEccCCCchhhccCcc
Confidence 35555666655555555 9999 888877762 2334789999554 4444443 22111 12234
Q ss_pred eEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Q 040307 75 TNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI 150 (339)
Q Consensus 75 ~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i 150 (339)
..++++|++ ++|.... + .|.+.|+.+++ .+..+... ....-...+ +....+ -+.||....
T Consensus 108 ~~~~ls~dg-----k~l~V~n~~p~~~V~VvD~~~~k--vv~ei~vp------~~~~vy~t~--e~~~~~-~~~Dg~~~~ 171 (352)
T TIGR02658 108 WMTSLTPDN-----KTLLFYQFSPSPAVGVVDLEGKA--FVRMMDVP------DCYHIFPTA--NDTFFM-HCRDGSLAK 171 (352)
T ss_pred ceEEECCCC-----CEEEEecCCCCCEEEEEECCCCc--EEEEEeCC------CCcEEEEec--CCccEE-EeecCceEE
Confidence 588999999 6666554 3 99999999987 55544431 111222222 222222 223454444
Q ss_pred EECCC-Cee-eeeee-ccC--CceeE-EEec--CCcEEEEEeCCCcEEEEECCCCccee----eEEeCC-----CCCCCe
Q 040307 151 WDIDR-EIL-ETQLV-AHD--REVYD-ISWG--GFNVFASVSGDCSVRVFDLRDKERST----IIYENP-----VQDCPL 213 (339)
Q Consensus 151 ~d~~~-~~~-~~~~~-~~~--~~v~~-~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~-----~~~~~v 213 (339)
..+.+ ++. ..... .+. .++.. -.|. ++.++..... |.|.+.|+....... ...... -..+..
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 33322 211 11100 011 01000 0223 4555555544 999999975543111 111110 012334
Q ss_pred EEEEEecCCCCeEEEEe-e--------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEE
Q 040307 214 LRLEWNKADPRFMATVG-M--------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIW 283 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~~-~--------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iw 283 (339)
.-++++| +++.+++.. . .++.|.++|..+ .+.+..+.. ...+..++++||+..+|++.. .++.|.++
T Consensus 251 q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 251 QQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred eeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 4599998 666666532 1 113599999987 566666664 568999999999941555554 67889999
Q ss_pred EecCCC
Q 040307 284 EVVGPG 289 (339)
Q Consensus 284 d~~~~~ 289 (339)
|..+.+
T Consensus 328 D~~t~k 333 (352)
T TIGR02658 328 DAETGK 333 (352)
T ss_pred ECcCCe
Confidence 998877
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.14 E-value=2.8e-07 Score=71.95 Aligned_cols=236 Identities=11% Similarity=0.131 Sum_probs=129.3
Q ss_pred EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEE
Q 040307 23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRL 100 (339)
Q Consensus 23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~i 100 (339)
++.+++ |++||+-. |..|.|=.-..+-..+...-.........-..++||||+ .+||.+.. +|++
T Consensus 3 ~~~~~~---Gk~lAi~q-----d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-----tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSD---GKLLAILQ-----DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-----TLLAYAESTGTIRV 69 (282)
T ss_pred eeecCC---CcEEEEEe-----ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-----cEEEEEcCCCeEEE
Confidence 456677 99999987 888888322222222211111112223345789999999 89998864 9999
Q ss_pred EeecCCcceeEEEeec-C-CCccCCCCEEEEEEcCCC-----CCEEEEEeCCCeEEEEECCCC-----eeeeeee---cc
Q 040307 101 WEIHDDRTELKSLLNS-N-KTSEFSSAITSFDWAGFD-----TRRVATCSVDTTCVIWDIDRE-----ILETQLV---AH 165 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~-----~~~l~~~~~d~~v~i~d~~~~-----~~~~~~~---~~ 165 (339)
+|+...+ .. .+.. + .......+|.+|.|.+.. ...|++-...|.++-|-+..+ +....+. .+
T Consensus 70 fdl~g~~--lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y 146 (282)
T PF15492_consen 70 FDLMGSE--LF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY 146 (282)
T ss_pred Eecccce--eE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC
Confidence 9998754 21 2221 1 111223678888886532 235666677888887765322 2222322 24
Q ss_pred CCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC------eEEE
Q 040307 166 DREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN------KVVV 238 (339)
Q Consensus 166 ~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~------~i~i 238 (339)
...|.++.|++ .++|+.|+.... ..+. .. . ....+++-..-.....+..+...+.. ...+
T Consensus 147 p~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~---a--~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~ 213 (282)
T PF15492_consen 147 PHGINSAVYHPKHRLLLVGGCEQN------QDGM--SK---A--SSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGL 213 (282)
T ss_pred CCceeEEEEcCCCCEEEEeccCCC------CCcc--cc---c--cccCceEEEEcCCCCcEEEccccCccccccccccce
Confidence 66899999994 567776665432 0000 00 0 01122221111111122211111111 0123
Q ss_pred EecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 239 LDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 239 ~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
|.+-. .............|..|..||+| .+||+...+|.|.+|++....
T Consensus 214 ~~~~~-~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 214 LRIPS-FKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eeccc-eeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence 32221 11111112235689999999999 699999999999999998876
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.2e-07 Score=79.36 Aligned_cols=192 Identities=8% Similarity=0.024 Sum_probs=116.6
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE-eC-
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC-SV- 144 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~- 144 (339)
+......|+|+++ .+++..+ + .|.++|+.+++.+.+... . +......|+| |++.++.. +.
T Consensus 188 ~~~~~p~wSpDG~----~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~-----g~~~~~~~SP-DG~~la~~~~~~ 254 (419)
T PRK04043 188 GLNIFPKWANKEQ----TAFYYTSYGERKPTLYKYNLYTGKKEKIASS---Q-----GMLVVSDVSK-DGSKLLLTMAPK 254 (419)
T ss_pred CCeEeEEECCCCC----cEEEEEEccCCCCEEEEEECCCCcEEEEecC---C-----CcEEeeEECC-CCCEEEEEEccC
Confidence 3678899999993 3355322 2 799999988864443322 2 4455678998 88766543 33
Q ss_pred -CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-CC--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307 145 -DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-DC--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 145 -d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (339)
+..|.++|+.+++ ...+..+........|+ +++.|+..+. .+ .|.+.|+.+++........ . . ...|+
T Consensus 255 g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~--~--~~~~S 327 (419)
T PRK04043 255 GQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--K--N--NSSVS 327 (419)
T ss_pred CCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--C--c--CceEC
Confidence 3568888987776 34444344334456799 6776665553 33 5788888877643333322 1 1 24899
Q ss_pred cCCCCeEEEEeeCC--------CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCc--EEEEEecCC
Q 040307 220 KADPRFMATVGMDS--------NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSR--ALIWEVVGP 288 (339)
Q Consensus 220 p~~~~~l~~~~~d~--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--v~iwd~~~~ 288 (339)
| +|+.|+..+... ..|.+.|+... . ...+... .......|+|||. .|+..+ ..+. +.+.++...
T Consensus 328 P-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~~LT~~-~~~~~p~~SPDG~-~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 328 T-YKNYIVYSSRETNNEFGKNTFNLYLISTNSD-Y-IRRLTAN-GVNQFPRFSSDGG-SIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred C-CCCEEEEEEcCCCcccCCCCcEEEEEECCCC-C-eEECCCC-CCcCCeEECCCCC-EEEEEEccCCcEEEEEEecCCC
Confidence 9 778776665442 24888888653 2 3444433 2334689999995 555444 3344 445555443
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=4.5e-07 Score=73.18 Aligned_cols=225 Identities=13% Similarity=0.075 Sum_probs=141.7
Q ss_pred EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEc-CCCCCCCCCeEEEeCCcEEE
Q 040307 22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFF-PSEETLNPDIVATSGDSLRL 100 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~~~~~la~~~~~i~i 100 (339)
++.|.+. ++.++.+-. ..+.|.. ++..+..... ..... ...+.+. +++ .++++..+.+.+
T Consensus 4 gp~~d~~--~g~l~~~D~----~~~~i~~--~~~~~~~~~~-----~~~~~-~~G~~~~~~~g-----~l~v~~~~~~~~ 64 (246)
T PF08450_consen 4 GPVWDPR--DGRLYWVDI----PGGRIYR--VDPDTGEVEV-----IDLPG-PNGMAFDRPDG-----RLYVADSGGIAV 64 (246)
T ss_dssp EEEEETT--TTEEEEEET----TTTEEEE--EETTTTEEEE-----EESSS-EEEEEEECTTS-----EEEEEETTCEEE
T ss_pred ceEEECC--CCEEEEEEc----CCCEEEE--EECCCCeEEE-----EecCC-CceEEEEccCC-----EEEEEEcCceEE
Confidence 4678884 166666655 5787777 4444444432 22222 7777888 676 787777777777
Q ss_pred EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--------CeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--------TTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+|..+++.+.+...... .......+.+++.| ++++.++.... |.|..++.. ++..... ..-...+.+
T Consensus 65 ~d~~~g~~~~~~~~~~~--~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi 139 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDG--GVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGI 139 (246)
T ss_dssp EETTTTEEEEEEEEETT--CSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEE
T ss_pred EecCCCcEEEEeeccCC--CcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccce
Confidence 79888865555444211 00126788999998 88877776543 568888876 5533333 334567899
Q ss_pred Eec-CCcEE-EEEeCCCcEEEEECCCCcc----eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 173 SWG-GFNVF-ASVSGDCSVRVFDLRDKER----STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 173 ~~~-~~~~l-~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
+|+ +++.| ++-+..+.|..+++..... ...+.......+..-.+++.+ +|++.++....+. |.++|.+ ++
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~-I~~~~p~--G~ 215 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGR-IVVFDPD--GK 215 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTE-EEEEETT--SC
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCE-EEEECCC--cc
Confidence 999 66655 4667788899999864432 222233322223477899996 8887776665666 9999976 56
Q ss_pred ceEEEecCCCCeeEEEec-cCCCCeEEEE
Q 040307 247 PVVVLSKHEGSVNGISWA-PLYGRRLCSV 274 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~-p~~~~~l~~~ 274 (339)
.+..+......+++++|. |+...+++|.
T Consensus 216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 677777665689999994 6654455443
No 294
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=2.1e-07 Score=80.17 Aligned_cols=258 Identities=12% Similarity=-0.067 Sum_probs=140.8
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCccee
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTEL 110 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~ 110 (339)
+..+++++ .++.+..++ ..+++..- .......+.+.-...++ .+++...+ .+..+|.++++ .
T Consensus 105 ~~~v~v~~----~~g~l~ald--~~tG~~~W----~~~~~~~~~~~p~v~~~-----~v~v~~~~g~l~a~d~~tG~--~ 167 (377)
T TIGR03300 105 GGLVFVGT----EKGEVIALD--AEDGKELW----RAKLSSEVLSPPLVANG-----LVVVRTNDGRLTALDAATGE--R 167 (377)
T ss_pred CCEEEEEc----CCCEEEEEE--CCCCcEee----eeccCceeecCCEEECC-----EEEEECCCCeEEEEEcCCCc--e
Confidence 45666766 588888854 44444332 11112222211111234 45555555 89999998887 3
Q ss_pred EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC----c------e-eEEEecCCcE
Q 040307 111 KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR----E------V-YDISWGGFNV 179 (339)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~ 179 (339)
+-.+.................. + ..++.+..++.+..+|+++++.+........ . + ....+ .+..
T Consensus 168 ~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~ 243 (377)
T TIGR03300 168 LWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQ 243 (377)
T ss_pred eeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCE
Confidence 3333221100000000011121 2 4677888889999999999986654321100 0 0 01112 2567
Q ss_pred EEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-CCCe
Q 040307 180 FASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-EGSV 258 (339)
Q Consensus 180 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-~~~v 258 (339)
++.++.++.++.||..+++..-.. .. ........ .+..+++++.++. +..+|..+ ++.+...... ....
T Consensus 244 vy~~~~~g~l~a~d~~tG~~~W~~-~~----~~~~~p~~---~~~~vyv~~~~G~-l~~~d~~t-G~~~W~~~~~~~~~~ 313 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRSGRVLWKR-DA----SSYQGPAV---DDNRLYVTDADGV-VVALDRRS-GSELWKNDELKYRQL 313 (377)
T ss_pred EEEEEcCCEEEEEECCCCcEEEee-cc----CCccCceE---eCCEEEEECCCCe-EEEEECCC-CcEEEccccccCCcc
Confidence 777888999999999887632211 11 11122222 3566777788888 99999976 4444333211 1112
Q ss_pred eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-cccee-EEEEecCCCCceEEEecCCeEEE
Q 040307 259 NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEI-NVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 259 ~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i-~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
.+... .+ ..|++++.+|.|.++|..+++ .+.... +...+ .+.... ++ .|+.++.||.|..
T Consensus 314 ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~-------------~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~ 375 (377)
T TIGR03300 314 TAPAV--VG-GYLVVGDFEGYLHWLSREDGS-------------FVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYA 375 (377)
T ss_pred ccCEE--EC-CEEEEEeCCCEEEEEECCCCC-------------EEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEE
Confidence 22222 34 378889999999999988877 332222 22222 222222 33 5889999999987
Q ss_pred Ee
Q 040307 337 LK 338 (339)
Q Consensus 337 w~ 338 (339)
|+
T Consensus 376 ~~ 377 (377)
T TIGR03300 376 FR 377 (377)
T ss_pred eC
Confidence 64
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.11 E-value=2e-06 Score=69.44 Aligned_cols=215 Identities=9% Similarity=0.027 Sum_probs=132.2
Q ss_pred EEEEcC-CCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307 76 NIAFFP-SEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD 152 (339)
Q Consensus 76 ~l~~~~-~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d 152 (339)
++.|.+ ++ .++.+.- + .|..|+..+++ ...+.. .....+.+...+ ..|+.+... .+.++|
T Consensus 4 gp~~d~~~g-----~l~~~D~~~~~i~~~~~~~~~---~~~~~~-------~~~~G~~~~~~~-g~l~v~~~~-~~~~~d 66 (246)
T PF08450_consen 4 GPVWDPRDG-----RLYWVDIPGGRIYRVDPDTGE---VEVIDL-------PGPNGMAFDRPD-GRLYVADSG-GIAVVD 66 (246)
T ss_dssp EEEEETTTT-----EEEEEETTTTEEEEEETTTTE---EEEEES-------SSEEEEEEECTT-SEEEEEETT-CEEEEE
T ss_pred ceEEECCCC-----EEEEEEcCCCEEEEEECCCCe---EEEEec-------CCCceEEEEccC-CEEEEEEcC-ceEEEe
Confidence 578888 55 6777765 3 89999988874 222322 236677887325 555555554 445559
Q ss_pred CCCCeeeeeeec-----cCCceeEEEec-CCcEEEEEeCC--------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307 153 IDREILETQLVA-----HDREVYDISWG-GFNVFASVSGD--------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 153 ~~~~~~~~~~~~-----~~~~v~~~~~~-~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (339)
..+++....... .....+++++. ++++.++.... |.|..++.. ++ ....... -.....++|
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~---~~~pNGi~~ 141 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG---LGFPNGIAF 141 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE---ESSEEEEEE
T ss_pred cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecC---cccccceEE
Confidence 988864333322 23467889999 78877776654 457777766 33 2222222 246789999
Q ss_pred ecCCCCeEEEEeeCCCeEEEEecCCCCCceE------EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307 219 NKADPRFMATVGMDSNKVVVLDIRFPTNPVV------VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS 292 (339)
Q Consensus 219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~ 292 (339)
+| +++.|++.......|..|++......+. .+....+..-.+++.++| ++.++.-..+.|.+++.+ ++
T Consensus 142 s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~--- 215 (246)
T PF08450_consen 142 SP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GK--- 215 (246)
T ss_dssp ET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SC---
T ss_pred CC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-cc---
Confidence 98 7877765555444499999875343121 122222247789999999 577777778999999987 44
Q ss_pred CCCCCCCcccceeeec-ccceeEEEEec-CCCCceEEE
Q 040307 293 GNGGPSGDVEPELCYQ-SMAEINVVRWS-PLELDWIAI 328 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~-p~~~~l~~~ 328 (339)
.+.... ....+++++|. |+...|+.+
T Consensus 216 ----------~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 216 ----------LLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ----------EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ----------EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 232222 23589999994 665555543
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=3.5e-10 Score=95.19 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=121.4
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-------eeeeeeeccCCceeEEEec-CCcEEE
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-------ILETQLVAHDREVYDISWG-GFNVFA 181 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~-~~~~l~ 181 (339)
.+..+.+|+ ..|..+.--. +.+.+++++.|.+|++|.++.. .+..+++.|+.+|.++.|- +..+++
T Consensus 727 rL~nf~GH~-----~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ 800 (1034)
T KOG4190|consen 727 RLCNFTGHQ-----EKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA 800 (1034)
T ss_pred eeecccCcH-----HHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee
Confidence 344566776 6777776553 7889999999999999998642 3667788999999999998 666666
Q ss_pred EEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEE-eeCCCeEEEEecCCCCCceEEE-----ecC
Q 040307 182 SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATV-GMDSNKVVVLDIRFPTNPVVVL-----SKH 254 (339)
Q Consensus 182 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~-~~d~~~i~i~d~~~~~~~~~~~-----~~~ 254 (339)
++ ||.|.+||.--++........+.+ +.+..+.--|. +..++.++ +...+ |+++|.+.. .-...+ .+.
T Consensus 801 Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeST-VKl~DaRsc-e~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAEST-VKLFDARSC-EWTCELKVCNAPGP 875 (1034)
T ss_pred ec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhh-heeeecccc-cceeeEEeccCCCC
Confidence 54 889999998877755544433333 33333433333 34455554 56666 999999873 333333 234
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+..+++++..|.| +.++.+-.+|+|.+.|.+++.
T Consensus 876 na~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 876 NALTRAIAVADKG-NKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred chheeEEEeccCc-chhhHHhcCCcEEEEecCCCc
Confidence 4678999999999 699999999999999999987
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.5e-09 Score=83.87 Aligned_cols=94 Identities=17% Similarity=0.277 Sum_probs=74.6
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCccee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
..|.+++|+|.+..++..++.+.+|+|.|+++...+..+..+ ..+++++|. +.++|..|-..|.|.+||+|..+.+.
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 789999999966668999999999999999999988888877 789999999 57788899999999999999987544
Q ss_pred eEEeCCCCCCCeEEEEE
Q 040307 202 IIYENPVQDCPLLRLEW 218 (339)
Q Consensus 202 ~~~~~~~~~~~v~~~~~ 218 (339)
..........+|..++.
T Consensus 273 ~e~~a~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 273 MELVANVTINPVHKIAP 289 (463)
T ss_pred hhhhhhhccCcceeecc
Confidence 33322122344554443
No 298
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.03 E-value=1.5e-10 Score=98.88 Aligned_cols=206 Identities=17% Similarity=0.287 Sum_probs=142.6
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe----
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS---- 143 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---- 143 (339)
....+.|++++.+..+ .+++.|.. .|-+-.+......-.....++. .++++++|++.|.+.||+|-
T Consensus 55 dtqy~kcva~~y~~d~---cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a-----r~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDR---CILAVGSATGNISLLSVRHPHDSSAEVTPGYA-----RPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred cCCCceeehhhcCCch---hhhhhccccCceEEeecCCcccccceeccccc-----ccccccccccccHHHHHhhhhhhc
Confidence 3456788888776631 46777753 7777777665422233444554 89999999998888888874
Q ss_pred CCCeEEEEECCCC--eee--eeeec-cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEE
Q 040307 144 VDTTCVIWDIDRE--ILE--TQLVA-HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLE 217 (339)
Q Consensus 144 ~d~~v~i~d~~~~--~~~--~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 217 (339)
.|..+.|||+.++ .+. ..+.+ ......+++|. +..++.+|...+.+.++|+|.......... ...+..+.
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~t 202 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGIT 202 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccce
Confidence 3678999999876 221 12222 33456688898 888999999999999999995542222222 23566778
Q ss_pred EecCCCCeEEEEeeCCCeEEEEe-cCCCCCceEEEecCCC----CeeEEEeccCCCCeEEEEeCC-CcEEEEEecCCC
Q 040307 218 WNKADPRFMATVGMDSNKVVVLD-IRFPTNPVVVLSKHEG----SVNGISWAPLYGRRLCSVADD-SRALIWEVVGPG 289 (339)
Q Consensus 218 ~~p~~~~~l~~~~~d~~~i~i~d-~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~d-g~v~iwd~~~~~ 289 (339)
..|..++++++-. ++. |.+|| .++...++..+..... .+..++|.|....++++.+.| ++|+++|+..-.
T Consensus 203 Vdp~~~nY~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred ecCCCCCceeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 8887888888765 777 99999 5555555554443333 489999999876678887755 689999987654
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.00 E-value=2.4e-06 Score=73.67 Aligned_cols=220 Identities=11% Similarity=-0.044 Sum_probs=121.9
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCce-EEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcce
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT-NIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTE 109 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~ 109 (339)
+..+.+++ .++.|..++ ..+++..-. ......+. .... .++ .+++.+.+ .+..+|.++++
T Consensus 65 ~~~v~v~~----~~g~v~a~d--~~tG~~~W~----~~~~~~~~~~p~v-~~~-----~v~v~~~~g~l~ald~~tG~-- 126 (377)
T TIGR03300 65 GGKVYAAD----ADGTVVALD--AETGKRLWR----VDLDERLSGGVGA-DGG-----LVFVGTEKGEVIALDAEDGK-- 126 (377)
T ss_pred CCEEEEEC----CCCeEEEEE--ccCCcEeee----ecCCCCcccceEE-cCC-----EEEEEcCCCEEEEEECCCCc--
Confidence 44667777 578888844 444443321 11112221 2222 133 45544445 99999998887
Q ss_pred eEEEeecCCCccCCCCEEE-EEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee-----EEEecCCcEEEEE
Q 040307 110 LKSLLNSNKTSEFSSAITS-FDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY-----DISWGGFNVFASV 183 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~l~~~ 183 (339)
.+...... ..+.+ ... .+..++.++.++.|..+|.++++.+..+........ +.... +..++.+
T Consensus 127 ~~W~~~~~------~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~ 196 (377)
T TIGR03300 127 ELWRAKLS------SEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVG 196 (377)
T ss_pred EeeeeccC------ceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEE
Confidence 33322221 12211 111 245677778899999999999987776643322111 11112 3567788
Q ss_pred eCCCcEEEEECCCCcceeeEEe-CCCCCCCe-------EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC
Q 040307 184 SGDCSVRVFDLRDKERSTIIYE-NPVQDCPL-------LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE 255 (339)
Q Consensus 184 ~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~v-------~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~ 255 (339)
..++.+..+|.++++..-.... .+.....+ .+..+ .+..+++++.++. ++.||..+ ++.+..... .
T Consensus 197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~-l~a~d~~t-G~~~W~~~~-~ 270 (377)
T TIGR03300 197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGR-VAALDLRS-GRVLWKRDA-S 270 (377)
T ss_pred CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCE-EEEEECCC-CcEEEeecc-C
Confidence 8889999999988863221110 00000000 11112 2456777788888 99999986 444444331 1
Q ss_pred CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 256 GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 256 ~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
...... ..+ ..++.++.+|.+..+|..+++
T Consensus 271 -~~~~p~--~~~-~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 271 -SYQGPA--VDD-NRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred -CccCce--EeC-CEEEEECCCCeEEEEECCCCc
Confidence 111222 234 377788889999999998876
No 300
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=99.00 E-value=1.1e-06 Score=75.38 Aligned_cols=127 Identities=10% Similarity=0.163 Sum_probs=86.0
Q ss_pred EEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCC
Q 040307 190 RVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGR 269 (339)
Q Consensus 190 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 269 (339)
.+|++...+........-..+..+.+++++| +...++.|+.||. |.+||.... +..+....-..+.++|+|+| .
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgS-iiLyD~~~~---~t~~~ka~~~P~~iaWHp~g-a 312 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGS-IILYDTTRG---VTLLAKAEFIPTLIAWHPDG-A 312 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCe-EEEEEcCCC---eeeeeeecccceEEEEcCCC-c
Confidence 4677665542222222112457899999998 8899999999999 999998763 33333345567899999999 5
Q ss_pred eEEEEeCCCcEEEEEecCCCC----CCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307 270 RLCSVADDSRALIWEVVGPGY----RSGNGGPSGDVEPELCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 270 ~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 322 (339)
++++|+..|.+.+||+.-... ..++..|...++.-..+.+...+..+.|.+..
T Consensus 313 i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 313 IFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred EEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 999999999999999976552 11122222222222333556778889998543
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=2.9e-09 Score=84.57 Aligned_cols=184 Identities=16% Similarity=0.190 Sum_probs=125.4
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
+..++.+..-.| +|+-+- .+..+++|. +..|-| .+.+++.-.. +...+.|.++.|...+ .+
T Consensus 206 ~~SlQi~~a~~C-awSlni-~gyhfs~G~-----sqqv~L--~nvetg~~qs-----f~sksDVfAlQf~~s~-----nL 266 (425)
T KOG2695|consen 206 LCSLQIPKAWSC-AWSLNI-MGYHFSVGL-----SQQVLL--TNVETGHQQS-----FQSKSDVFALQFAGSD-----NL 266 (425)
T ss_pred eeeecCCcchhh-hhhhcc-ceeeecccc-----cceeEE--EEeecccccc-----cccchhHHHHHhcccC-----Ce
Confidence 444444443333 777441 144555666 777878 5555554443 5577889999999988 78
Q ss_pred EEEeCC--cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---eeee
Q 040307 91 VATSGD--SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL---ETQL 162 (339)
Q Consensus 91 la~~~~--~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~ 162 (339)
+..|.. .|..+|++... ..+...+- |. +.|+++..-..++++|++++.+|+|++||++.-++ ++++
T Consensus 267 v~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~-----Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY 340 (425)
T KOG2695|consen 267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD-----SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY 340 (425)
T ss_pred eEecccCCcEEEEEeeecccCCCcceEEEE-cC-----cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee
Confidence 888874 99999998751 22333332 33 78888887644788999999999999999987766 8888
Q ss_pred eccCCceeEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeC-CCCCCCeEEEEEe
Q 040307 163 VAHDREVYDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-PVQDCPLLRLEWN 219 (339)
Q Consensus 163 ~~~~~~v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~ 219 (339)
.+|-+.-.-+-++ ....+++++.|...+||.++.+.....+... ...+..+.+++|.
T Consensus 341 eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 341 EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 8887765555555 3567888999999999999988754443221 1122345566664
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=1.8e-08 Score=81.62 Aligned_cols=152 Identities=9% Similarity=0.072 Sum_probs=101.5
Q ss_pred EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCc
Q 040307 171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNP 247 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~ 247 (339)
.+.++ .+.+++.+..+....+++++.......+.....-.....++.|.. +......+...|. .+.+|.... .+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~--~~ 143 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS--GR 143 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccc--cC
Confidence 34445 477888888888877888776653111111100112334555554 3333333333333 245554443 33
Q ss_pred eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceE
Q 040307 248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~ 326 (339)
...+-+|-..+..|+|+||. ++|+++..|..|++-.+.... ... ...+|..-|..++.-++.. |+
T Consensus 144 ~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f------------~IesfclGH~eFVS~isl~~~~~-Ll 209 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF------------VIESFCLGHKEFVSTISLTDNYL-LL 209 (390)
T ss_pred cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc------------chhhhccccHhheeeeeeccCce-ee
Confidence 45566899999999999999 699999999999998877755 111 4458999999999988865 88
Q ss_pred EEecCCeEEEEeC
Q 040307 327 AIAFVNKLQLLKV 339 (339)
Q Consensus 327 ~~~~d~~v~~w~v 339 (339)
++|.|++|++|++
T Consensus 210 S~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 210 SGSGDKTLRLWDI 222 (390)
T ss_pred ecCCCCcEEEEec
Confidence 9999999999985
No 303
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=6.8e-08 Score=85.73 Aligned_cols=112 Identities=15% Similarity=0.315 Sum_probs=86.8
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--c
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--S 97 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~ 97 (339)
.+-.+|+|. ..++|+++++....|.|.|| -..+ +... ....+-.+++++|+|.. -+|+.|-+ .
T Consensus 18 sti~SWHPs---ePlfAVA~fS~er~GSVtIf--adtG-EPqr----~Vt~P~hatSLCWHpe~-----~vLa~gwe~g~ 82 (1416)
T KOG3617|consen 18 STISSWHPS---EPLFAVASFSPERGGSVTIF--ADTG-EPQR----DVTYPVHATSLCWHPEE-----FVLAQGWEMGV 82 (1416)
T ss_pred ccccccCCC---CceeEEEEecCCCCceEEEE--ecCC-CCCc----ccccceehhhhccChHH-----HHHhhccccce
Confidence 344589999 99999999988889999995 3322 2222 11223346779999998 78888875 8
Q ss_pred EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307 98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID 154 (339)
Q Consensus 98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 154 (339)
+.+|...+.+ .......|. .+|..+.||+ +|..++++..-|.|.+|...
T Consensus 83 ~~v~~~~~~e--~htv~~th~-----a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQKTNTTE--THTVVETHP-----APIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEEecCCce--eeeeccCCC-----CCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 9999988775 555555677 8999999998 99999999999999999875
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=2e-07 Score=82.05 Aligned_cols=245 Identities=12% Similarity=0.131 Sum_probs=162.7
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC---CC---CCeEE
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET---LN---PDIVA 92 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~---~~---~~~la 92 (339)
.-.++.|+|. | ++|.|+ ...|.+ ++....+..+ .+ ..|+..|+.+.|.|.... .. ..+++
T Consensus 17 N~~A~Dw~~~---G-LiAygs-----hslV~V--VDs~s~q~iq--si-e~h~s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 17 NRNAADWSPS---G-LIAYGS-----HSLVSV--VDSRSLQLIQ--SI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred cccccccCcc---c-eEEEec-----CceEEE--Eehhhhhhhh--cc-ccCccceeEEEeccCCCchhccCccccceeE
Confidence 3567889998 5 789998 578888 5544444443 33 468899999999875321 00 13344
Q ss_pred EeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC--CC-CEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 93 TSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF--DT-RRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 93 ~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
+.+| .|.+||+.... ....+..+. .++..++|-|. +. ..|++-....++-+|+..+|+...++....
T Consensus 83 AsaD~~GrIil~d~~~~s--~~~~l~~~~-----~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~ 155 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLAS--VINWLSHSN-----DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH 155 (1062)
T ss_pred EeccccCcEEEEEehhhh--hhhhhcCCC-----cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC
Confidence 4443 99999998876 566677766 78889998752 33 567776778899999999999888887666
Q ss_pred CceeEEEec--CCcEEEEEeCCCcEEEEECCCCcce---e-eEEeCCCCCC-------------------------CeEE
Q 040307 167 REVYDISWG--GFNVFASVSGDCSVRVFDLRDKERS---T-IIYENPVQDC-------------------------PLLR 215 (339)
Q Consensus 167 ~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~---~-~~~~~~~~~~-------------------------~v~~ 215 (339)
....|+.+. +...+..-+..|.+.+-+.-..+.+ . .++-...|.. ....
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 677778887 4556666666676666654322211 0 0100000000 1123
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCC-CeEEEEeCCCcEEEEEecC
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG-RRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~iwd~~~ 287 (339)
++|+|.-.+.++. ..... +.++|++- ..++....-..+.+.-+.|-|+.. ..|++.-.||.+.+|-.+.
T Consensus 236 faf~p~~rn~lfi-~~pre-llv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 236 FAFSPHWRNILFI-TFPRE-LLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhcChhhhceEEE-Eeccc-eEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 5678854555544 44555 99999987 667777777777777788888753 3677888999999997765
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.93 E-value=6.4e-07 Score=82.69 Aligned_cols=248 Identities=15% Similarity=0.235 Sum_probs=148.7
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD- 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~- 96 (339)
+.|.++.|.-+ ...++.+. ..|.|.+ .+.++..... ...-...|.+++|+||. ++++..++
T Consensus 69 ~~i~s~~fl~d---~~~i~v~~----~~G~iil--vd~et~~~ei----vg~vd~GI~aaswS~De-----e~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLAD---TNSICVIT----ALGDIIL--VDPETLELEI----VGNVDNGISAASWSPDE-----ELLALITGR 130 (1265)
T ss_pred cceEEEEEecc---cceEEEEe----cCCcEEE--Ecccccceee----eeeccCceEEEeecCCC-----cEEEEEeCC
Confidence 57889999998 88888888 7899999 5666555554 23456789999999999 77766553
Q ss_pred -cEEEEee--c--CC-----------c------ceeEEEeecCCC----------------ccCCCCEEEEEEcCCCCCE
Q 040307 97 -SLRLWEI--H--DD-----------R------TELKSLLNSNKT----------------SEFSSAITSFDWAGFDTRR 138 (339)
Q Consensus 97 -~i~iw~~--~--~~-----------~------~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~ 138 (339)
++.+-.- + .. + .+....|.+... ......=+.+.|.. ||++
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~ 209 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEY 209 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcE
Confidence 4433221 0 00 0 001112221110 00011223588985 9999
Q ss_pred EEEEe----CC-CeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEe---CCCcEEEEECCCCcceeeEEeCCCC
Q 040307 139 VATCS----VD-TTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVS---GDCSVRVFDLRDKERSTIIYENPVQ 209 (339)
Q Consensus 139 l~~~~----~d-~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~ 209 (339)
+|+.. .+ ..|++||.+ +..-..-....+.-.+++|-| |.++++-. .|+.|.+|.-...+.-......+..
T Consensus 210 fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 210 FAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred EEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence 99843 23 799999976 432222222233446788884 77777653 3567888886665543333333344
Q ss_pred CCCeEEEEEecCCCCeEEE---EeeCCCeEEEEecCCCCCce-EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307 210 DCPLLRLEWNKADPRFMAT---VGMDSNKVVVLDIRFPTNPV-VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~---~~~d~~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~ 285 (339)
..++..++|+. ++.+|++ ...... |++|-+.+..-.+ +.+....... +.|+|..++.|..-..+|...++++
T Consensus 289 e~~ve~L~Wns-~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 289 EKEVEELAWNS-NSDILAVVTSNLENSL-VQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ccchheeeecC-CCCceeeeecccccce-EEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 45699999996 8888888 333333 9999887632212 2222222222 8888876666666657777776666
Q ss_pred cCCC
Q 040307 286 VGPG 289 (339)
Q Consensus 286 ~~~~ 289 (339)
....
T Consensus 365 ~~~t 368 (1265)
T KOG1920|consen 365 AWTT 368 (1265)
T ss_pred EEee
Confidence 5433
No 306
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.92 E-value=8.4e-07 Score=77.40 Aligned_cols=209 Identities=10% Similarity=0.117 Sum_probs=123.6
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-- 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-- 96 (339)
.|.--++.-. +++++.|+ ..|.+++|+ ..++.... ....+..+.+.....+++. .++|.|+.
T Consensus 35 ~v~lTc~dst---~~~l~~Gs----S~G~lyl~~--R~~~~~~~--~~~~~~~~~~~~~~vs~~e-----~lvAagt~~g 98 (726)
T KOG3621|consen 35 RVKLTCVDAT---EEYLAMGS----SAGSVYLYN--RHTGEMRK--LKNEGATGITCVRSVSSVE-----YLVAAGTASG 98 (726)
T ss_pred eEEEEEeecC---CceEEEec----ccceEEEEe--cCchhhhc--ccccCccceEEEEEecchh-----HhhhhhcCCc
Confidence 3433445555 78999999 799999955 44444332 0011234456667778887 78888875
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeeeccCCceeEE
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI----LETQLVAHDREVYDI 172 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~~~~v~~~ 172 (339)
.|.++.++........ +-.+-...|...|++++|++ ++..+.+|...|+|.+-.+.... ..+.+....+.|-.+
T Consensus 99 ~V~v~ql~~~~p~~~~-~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl 176 (726)
T KOG3621|consen 99 RVSVFQLNKELPRDLD-YVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL 176 (726)
T ss_pred eEEeehhhccCCCcce-eeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence 8888888775421111 11111222448999999997 99999999999999998887621 223333456678778
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC---CCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 173 SWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA---DPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
.+.++.+|++.... ..++++.... ...+...+.....-...+|-|. ...-.+.++.-| .++|...-.+..+.
T Consensus 177 D~~q~~LLVStl~r--~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~ 251 (726)
T KOG3621|consen 177 DYLQSYLLVSTLTR--CILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIK 251 (726)
T ss_pred ecccceehHhhhhh--hheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEE
Confidence 77766666554432 3455655443 2222222111111234555552 133444555555 78998766554443
Q ss_pred E
Q 040307 250 V 250 (339)
Q Consensus 250 ~ 250 (339)
+
T Consensus 252 T 252 (726)
T KOG3621|consen 252 T 252 (726)
T ss_pred e
Confidence 3
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.90 E-value=7.9e-06 Score=65.89 Aligned_cols=231 Identities=12% Similarity=0.054 Sum_probs=144.6
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe----
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS---- 143 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---- 143 (339)
+.....++.+|... ..++.+-. ...+||..+++ ....+......-| --.-.|+| ++++|++.=
T Consensus 4 P~RgH~~a~~p~~~----~avafaRRPG~~~~v~D~~~g~--~~~~~~a~~gRHF---yGHg~fs~-dG~~LytTEnd~~ 73 (305)
T PF07433_consen 4 PARGHGVAAHPTRP----EAVAFARRPGTFALVFDCRTGQ--LLQRLWAPPGRHF---YGHGVFSP-DGRLLYTTENDYE 73 (305)
T ss_pred CccccceeeCCCCC----eEEEEEeCCCcEEEEEEcCCCc--eeeEEcCCCCCEE---ecCEEEcC-CCCEEEEeccccC
Confidence 34566788999663 67777753 88999999987 4444433221111 11356887 999988863
Q ss_pred -CCCeEEEEECC-CCeeeeeeeccCCceeEEEec-CCcEEEEEeC------------------CCcEEEEECCCCcceee
Q 040307 144 -VDTTCVIWDID-REILETQLVAHDREVYDISWG-GFNVFASVSG------------------DCSVRVFDLRDKERSTI 202 (339)
Q Consensus 144 -~d~~v~i~d~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~ 202 (339)
..|.|-|||.. +-+.+.++..|.-.-..+.+. ++..|+.+.. +.++.+.|.++++....
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 35789999998 556777787777667778888 6656665532 33555666677664443
Q ss_pred EEe-CCCCCCCeEEEEEecCCCCeEEEEeeCCC------eEEEEecCCCCCceEEEe-------cCCCCeeEEEeccCCC
Q 040307 203 IYE-NPVQDCPLLRLEWNKADPRFMATVGMDSN------KVVVLDIRFPTNPVVVLS-------KHEGSVNGISWAPLYG 268 (339)
Q Consensus 203 ~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~d~~------~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~ 268 (339)
... ...|+..+..+++.+ +|..++..-..+- -+.+++... ++..+. .-.+.+-+|++++++.
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~ 229 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGR 229 (305)
T ss_pred eecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCC
Confidence 222 133667899999996 7766665544432 134443322 222222 2345789999999995
Q ss_pred CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 269 RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 269 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
.+.+|+-.-+.+.+||..++. +.....-..+..++-.+++ ++++.+.
T Consensus 230 ~ia~tsPrGg~~~~~d~~tg~--------------~~~~~~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 230 LIAVTSPRGGRVAVWDAATGR--------------LLGSVPLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEECCCCCEEEEEECCCCC--------------EeeccccCceeeeeecCCc-eEEeCCC
Confidence 334455577899999999887 2222233446677766666 3444433
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=9.1e-09 Score=81.80 Aligned_cols=171 Identities=13% Similarity=0.168 Sum_probs=116.5
Q ss_pred EEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 040307 78 AFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE 156 (339)
Q Consensus 78 ~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 156 (339)
+|+-+-.. ..+++|.+ .|-+-+++++- ...|. .+ +.|.++.|.. .++++..|..+|.|..+|++..
T Consensus 218 awSlni~g---yhfs~G~sqqv~L~nvetg~---~qsf~-sk-----sDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~r 284 (425)
T KOG2695|consen 218 AWSLNIMG---YHFSVGLSQQVLLTNVETGH---QQSFQ-SK-----SDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCR 284 (425)
T ss_pred hhhhccce---eeecccccceeEEEEeeccc---ccccc-cc-----hhHHHHHhcc-cCCeeEecccCCcEEEEEeeec
Confidence 66644321 23445556 88888888873 33343 23 7899999985 7899999999999999999865
Q ss_pred -----eeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 157 -----ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 157 -----~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
.+...+ .|.+.|+++..- ++.+|++.+.+|+|++||+|..+.. ...++++-......-+..++ ....++
T Consensus 285 nqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~ 362 (425)
T KOG2695|consen 285 NQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIF 362 (425)
T ss_pred ccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEE
Confidence 244445 489999998876 5889999999999999999987652 33344411112222234454 556777
Q ss_pred EEeeCCCeEEEEecCCCCCceEEEecC----CCCeeEEEecc
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVLSKH----EGSVNGISWAP 265 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~p 265 (339)
+++.|-. .+||.++. +..+.++... ...+.+++|..
T Consensus 363 s~GdDcy-tRiWsl~~-ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 363 SVGDDCY-TRIWSLDS-GHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EccCeeE-EEEEeccc-CceeeccCCCCccccccccceehhc
Confidence 7888887 99999987 5556555432 22455555543
No 309
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.88 E-value=3.2e-06 Score=71.96 Aligned_cols=273 Identities=13% Similarity=0.153 Sum_probs=146.3
Q ss_pred eecCCcccEEEEeee-----ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEE
Q 040307 26 SVRHDRKSRLAVGSF-----LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLR 99 (339)
Q Consensus 26 sp~~~~~~~la~g~~-----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~ 99 (339)
||| +++++.... .-...+.+.||++.. +.... + ......+....|||++ +.+|-..+ .|.
T Consensus 1 S~d---~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~---l-~~~~~~~~~~~~sP~g-----~~~~~v~~~nly 66 (353)
T PF00930_consen 1 SPD---GKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITP---L-TPPPPKLQDAKWSPDG-----KYIAFVRDNNLY 66 (353)
T ss_dssp -TT---SSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEE---S-S-EETTBSEEEE-SSS-----TEEEEEETTEEE
T ss_pred CCC---CCeEEEEECcEEeeeeccceeEEEEecCC--CceEE---C-cCCccccccceeecCC-----CeeEEEecCceE
Confidence 567 777777543 111246677755554 33332 1 1125678999999999 78888776 999
Q ss_pred EEeecCCcceeEEEeecCC-----------CccCCCCEEEEEEcCCCCCEEEEEeCC-C---------------------
Q 040307 100 LWEIHDDRTELKSLLNSNK-----------TSEFSSAITSFDWAGFDTRRVATCSVD-T--------------------- 146 (339)
Q Consensus 100 iw~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~~l~~~~~d-~--------------------- 146 (339)
+++..+++...+ +..+.. .++....-..+-||| ++++||....| .
T Consensus 67 ~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~ 144 (353)
T PF00930_consen 67 LRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVE 144 (353)
T ss_dssp EESSTTSEEEES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEE
T ss_pred EEECCCCCeEEe-ccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCccc
Confidence 999877742222 222200 011012335788998 88888875432 1
Q ss_pred --------------eEEEEECCCCeeee-ee----eccCCceeEEEec-CCcEEEEE--eCCC---cEEEEECCCCccee
Q 040307 147 --------------TCVIWDIDREILET-QL----VAHDREVYDISWG-GFNVFASV--SGDC---SVRVFDLRDKERST 201 (339)
Q Consensus 147 --------------~v~i~d~~~~~~~~-~~----~~~~~~v~~~~~~-~~~~l~~~--~~d~---~i~i~d~~~~~~~~ 201 (339)
.+.|+|+.+++... .. ..-...+..+.|. ++..|+.. .++. .+.++|..++....
T Consensus 145 ~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~ 224 (353)
T PF00930_consen 145 SIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV 224 (353)
T ss_dssp EEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred ccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence 23345555554221 11 1223457788888 55523333 3332 36677887766444
Q ss_pred eEEeCCCCCCCe---EEEEEe-cCCCCeEEEEeeCCC-eEEEEecCCCCCceEEEecCCCCeeE-EEeccCCCCeEEEEe
Q 040307 202 IIYENPVQDCPL---LRLEWN-KADPRFMATVGMDSN-KVVVLDIRFPTNPVVVLSKHEGSVNG-ISWAPLYGRRLCSVA 275 (339)
Q Consensus 202 ~~~~~~~~~~~v---~~~~~~-p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~ 275 (339)
...+. ....+ ....|. +.+..++.....+|. +|++++.. +.....+....-.|.. +.|++++..+..++.
T Consensus 225 ~~~e~--~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 225 VLEET--SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--GGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp EEEEE--SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--SSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred EEEec--CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc--ccceeccccCceeecccceEcCCCCEEEEEec
Confidence 43332 22222 244554 645566666666665 35555554 3445566655667755 678888765666776
Q ss_pred CC--CcEEEEEecCC-CCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307 276 DD--SRALIWEVVGP-GYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 276 ~d--g~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
.+ +.-.||.+... . ..+..+......-..+.|||++++++-.+
T Consensus 301 ~~~p~~r~lY~v~~~~~-----------~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 301 GDNPGERHLYRVSLDSG-----------GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SGGTTSBEEEEEETTET-----------TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCceEEEEEEeCCC-----------CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 53 35666666655 3 11222222221126999999999877543
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=4.7e-09 Score=93.27 Aligned_cols=251 Identities=11% Similarity=0.059 Sum_probs=161.5
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+....+|++|+-+ .+.|++|+ -.|.|++|+.+....+-.. ..|+.+|+-+.-+.++ .++.+.+
T Consensus 1100 ~~~~fTc~afs~~---~~hL~vG~----~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dg-----s~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGG---TNHLAVGS----HAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDG-----STQLTSS 1162 (1516)
T ss_pred cccceeeEEeecC---CceEEeee----ccceEEEEEccCccccccc-----cccccccccccccCCc-----ceeeeec
Confidence 4578899999999 99999999 6999999887766555553 6899999999999999 4554443
Q ss_pred ---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee----ccCC
Q 040307 96 ---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV----AHDR 167 (339)
Q Consensus 96 ---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~ 167 (339)
. ...+|+.... ..+.+.+... .++.|+. ....-+.|.......+||++++.++.++- +...
T Consensus 1163 s~S~PlsaLW~~~s~-~~~~Hsf~ed---------~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST-GGPRHSFDED---------KAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred cccCchHHHhccccc-cCcccccccc---------ceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 3 7889998762 2355566543 3788884 44444555666788999999988766642 1222
Q ss_pred ceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307 168 EVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247 (339)
Q Consensus 168 ~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~ 247 (339)
.-++..|+|.+.|+- .|| .+||.|..+....+-.. ..-..-.|+| .|..++.- -.|||+++ .+.
T Consensus 1232 ~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~f----t~~~~G~FHP-~g~eVIIN------SEIwD~RT-F~l 1295 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQF----TDYGGGGFHP-SGNEVIIN------SEIWDMRT-FKL 1295 (1516)
T ss_pred hccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhh----eecccccccC-CCceEEee------chhhhhHH-HHH
Confidence 336778885444443 466 58999998655444332 1223447898 66666542 46899998 444
Q ss_pred eEEEecCCCCeeEEEeccCCCCeEEEEe--CC---------------CcEEEEEecCCCCCCCCCCCCCcccceeeeccc
Q 040307 248 VVVLSKHEGSVNGISWAPLYGRRLCSVA--DD---------------SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM 310 (339)
Q Consensus 248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d---------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (339)
++.+..- .-..|.|+..|. ++...- .| ...+-++.... .++..+...
T Consensus 1296 Lh~VP~L--dqc~VtFNstG~-VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dY-------------s~iaTi~v~ 1359 (1516)
T KOG1832|consen 1296 LHSVPSL--DQCAVTFNSTGD-VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDY-------------SDIATIPVD 1359 (1516)
T ss_pred HhcCccc--cceEEEeccCcc-chhhhhhhhhhhhhhcccccccchhhhhcccccccc-------------ccceeeecc
Confidence 5444322 235678888884 544332 00 01122222222 245555566
Q ss_pred ceeEEEEecCCCCceE
Q 040307 311 AEINVVRWSPLELDWI 326 (339)
Q Consensus 311 ~~i~~~~~~p~~~~l~ 326 (339)
..|.+++-.|...++.
T Consensus 1360 R~~~Dlct~~~D~~l~ 1375 (1516)
T KOG1832|consen 1360 RCLLDLCTEPTDSFLG 1375 (1516)
T ss_pred cchhhhhcCCccceEE
Confidence 6778888888776554
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=6.3e-07 Score=79.24 Aligned_cols=223 Identities=15% Similarity=0.078 Sum_probs=141.9
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v 148 (339)
...+.|.+++. ++|+-|+. .|++++.+.. + .+...|. .. . .+|.++++|+.||+|
T Consensus 39 ~D~is~~av~~-------~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s-----~~------~-~~Gey~asCS~DGkv 95 (846)
T KOG2066|consen 39 NDAISCCAVHD-------KFFALGTHRGAVYLTTCQGN---P-KTNFDHS-----SS------I-LEGEYVASCSDDGKV 95 (846)
T ss_pred hhHHHHHHhhc-------ceeeeccccceEEEEecCCc---c-ccccccc-----cc------c-cCCceEEEecCCCcE
Confidence 45677777764 68888873 8888887654 3 2233333 11 3 489999999999999
Q ss_pred EEEECCCCeeeeeeeccCCceeEEEecC------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 149 VIWDIDREILETQLVAHDREVYDISWGG------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
.|-.+-+.+...++. ...++.+++++| ...+++|+..| +.++.-+-....... ......++|.++.| .
T Consensus 96 ~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W---~ 169 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW---R 169 (846)
T ss_pred EEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe---c
Confidence 999998888777775 567899999984 46899999888 777754322211111 12235689999999 5
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC---
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG--- 293 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~--- 293 (339)
|+++|-++.+| |++||+.. .+.+..+..... .-..+.|.++. .|+.|=.| +|+|..++.......
T Consensus 170 g~lIAWand~G--v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d-~v~i~~I~~~~s~~a~~~ 243 (846)
T KOG2066|consen 170 GNLIAWANDDG--VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGD-SVKICSIKKRSSSEARSF 243 (846)
T ss_pred CcEEEEecCCC--cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCC--eEEEecCC-eEEEEEEecccccccccc
Confidence 78999988887 99999987 433444433222 23467888875 45555544 799999883321000
Q ss_pred CCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 294 NGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
...+...+.++..+....-|+.+++- |..|+.-+.
T Consensus 244 ~~~~~~~V~~~s~f~~s~~isGla~l--g~qLv~L~f 278 (846)
T KOG2066|consen 244 RLPSLKKVEIVSHFETSFYISGLAPL--GDQLVVLGF 278 (846)
T ss_pred cCCccceeeeEEEeeeeeeeeccccc--cceeEEEee
Confidence 01111122333344445556666654 334554443
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.83 E-value=2e-07 Score=83.45 Aligned_cols=187 Identities=10% Similarity=0.059 Sum_probs=136.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL 214 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 214 (339)
++..++.|+....+..+|+++.+..+...-..+.|+-|+.+ +..+.+|...|+|.+-|.++.+....+. . |.+.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~-a--Hs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFD-A--HSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec-CcEEEeecccceEEeecCCcCceeeeee-c--ccccee
Confidence 45677888888888899999888776665444457767665 7899999999999999999988555433 2 677887
Q ss_pred EEEEecCCCCeEEEEeeCCCe--------EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 215 RLEWNKADPRFMATVGMDSNK--------VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~d~~~--------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
.+.. .|+.|++++...+. |+|||+|+.. .+.-+.-+.++ .-+.|.|.-...+++++..|...+-|..
T Consensus 222 DfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 222 DFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeec---cCCeEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 7665 67889888876542 7899999844 23333333333 5578899877789999999999999966
Q ss_pred CCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 287 GPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
... .|. ............+..+++++++..++.+-.+|.|.+|.
T Consensus 297 ~ls-NP~-------~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLS-NPP-------AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccC-CCc-------cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 555 100 01123333455699999999998777888999999994
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.81 E-value=1.6e-08 Score=55.72 Aligned_cols=38 Identities=29% Similarity=0.526 Sum_probs=35.3
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
+++.++.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 3578899999999999999998 6999999999999997
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=9.4e-08 Score=78.81 Aligned_cols=208 Identities=17% Similarity=0.115 Sum_probs=142.8
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC---eeeeeeeccCCceeEEEec-CCcEEEEEeC-CCcEEEEECCCCc
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE---ILETQLVAHDREVYDISWG-GFNVFASVSG-DCSVRVFDLRDKE 198 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~ 198 (339)
..|+.+.-. -.+++.+++.||.++.|.-..- +.+..+..|-..+.+++.+ ++.++.+.+. |..++++|+.+-.
T Consensus 10 d~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 10 DVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 556655543 5789999999999999986431 2344456788889999999 8888999777 9999999998876
Q ss_pred ceeeEEeCCCCCCCeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307 199 RSTIIYENPVQDCPLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSV 274 (339)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 274 (339)
....+... .....+.|.-..| ..++++..+...+.++|-+... +....-.-|..+|..+.++|.+ ..+++.
T Consensus 88 minmiKL~----~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vSi 162 (558)
T KOG0882|consen 88 MINMIKLV----DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVSI 162 (558)
T ss_pred hhhhcccc----cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceeec
Confidence 54333322 1122334432222 2555555554459999988755 3445556689999999999999 488899
Q ss_pred eCCCcEEEEEecCCCCCCCCC---CCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 275 ADDSRALIWEVVGPGYRSGNG---GPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 275 ~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
...|.|.-|..+..-..|... ...................++.|+|++..+.+.+.|..||++.
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 899999999988522111100 0000011112223466789999999999888888999999875
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.78 E-value=3.4e-09 Score=90.81 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=133.3
Q ss_pred CCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCee--eeeeeccCCceeEEEec--CCcEEEEEe----CCCcEEEEEC
Q 040307 124 SAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREIL--ETQLVAHDREVYDISWG--GFNVFASVS----GDCSVRVFDL 194 (339)
Q Consensus 124 ~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~--~~~~l~~~~----~d~~i~i~d~ 194 (339)
..+.|+++.-. +...++.|..+|.|-+-..+.... .....++..+.++++|+ +.++||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 45667776532 335788899999999988765442 22345678899999999 678888773 3578999999
Q ss_pred CCCc----ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCe
Q 040307 195 RDKE----RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRR 270 (339)
Q Consensus 195 ~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 270 (339)
.+.- ....+... ......+++|.. +.+++.+|..... ++++|+|.... .........+..+..+|-...+
T Consensus 137 ~s~ltvPke~~~fs~~--~l~gqns~cwlr-d~klvlaGm~sr~-~~ifdlRqs~~--~~~svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSS--TLDGQNSVCWLR-DTKLVLAGMTSRS-VHIFDLRQSLD--SVSSVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred ccccCCCccccccccc--cccCcccccccc-Ccchhhcccccch-hhhhhhhhhhh--hhhhhhhhhcccceecCCCCCc
Confidence 8762 11111211 223455889984 7888888888888 99999995222 2222234567888999944357
Q ss_pred EEEEeCCCcEEEEEe-cCCCCCCCCCCCCCcccceeeeccc-----ceeEEEEecCCCCceEEEe--cCCeEEEEeC
Q 040307 271 LCSVADDSRALIWEV-VGPGYRSGNGGPSGDVEPELCYQSM-----AEINVVRWSPLELDWIAIA--FVNKLQLLKV 339 (339)
Q Consensus 271 l~~~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~l~~~~--~d~~v~~w~v 339 (339)
+++-. ||.|.+||. ..-+ .|+....+. ..+..++|+|....+++.. ..++|+++++
T Consensus 211 ~cs~~-dg~iAiwD~~rnie------------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIE------------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred eeccc-cCceeeccchhhhc------------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 77666 999999994 3333 344333332 3499999999987777654 4567888764
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=5.9e-08 Score=53.40 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=35.4
Q ss_pred eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307 109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD 152 (339)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d 152 (339)
+++.++.+|. .+|++++|+| ++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~-----~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS-----SSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS-----SSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC-----CcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 4778899998 9999999998 899999999999999997
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.1e-06 Score=76.06 Aligned_cols=185 Identities=19% Similarity=0.192 Sum_probs=127.3
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
.+.++|++++.. .||.|+ -+|.|++++.+... .. .+.|... ..+| .++++|++
T Consensus 39 ~D~is~~av~~~-----~~~~Gt----H~g~v~~~~~~~~~---~~----~~~~s~~------~~~G-----ey~asCS~ 91 (846)
T KOG2066|consen 39 NDAISCCAVHDK-----FFALGT----HRGAVYLTTCQGNP---KT----NFDHSSS------ILEG-----EYVASCSD 91 (846)
T ss_pred hhHHHHHHhhcc-----eeeecc----ccceEEEEecCCcc---cc----ccccccc------ccCC-----ceEEEecC
Confidence 467888888866 899999 69999996655432 21 1445443 5566 89999995
Q ss_pred --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC----CCCEEEEEeCCCeEEEEECCCCe--eeeeeeccCCc
Q 040307 97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF----DTRRVATCSVDTTCVIWDIDREI--LETQLVAHDRE 168 (339)
Q Consensus 97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~ 168 (339)
+|.|-.+.+.+ ...++.-+ .++.+++++|. ..+.+++|+.-| +.++.-+--. ....+....++
T Consensus 92 DGkv~I~sl~~~~--~~~~~df~------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 92 DGKVVIGSLFTDD--EITQYDFK------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred CCcEEEeeccCCc--cceeEecC------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 89999888876 33334333 68999999983 257899999988 7776543211 11134556789
Q ss_pred eeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 169 VYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP---VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 169 v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
|.++.|. ++++|-++.+| |++||+...+....+.... ....-...+.|. +...|+.|-.|. |+|..++.
T Consensus 163 I~~i~W~-g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~~~LVIGW~d~--v~i~~I~~ 234 (846)
T KOG2066|consen 163 IHSIKWR-GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DEDRLVIGWGDS--VKICSIKK 234 (846)
T ss_pred eEEEEec-CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CCCeEEEecCCe--EEEEEEec
Confidence 9999998 88999988776 8999999887555443321 112233567886 456677766654 88888873
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.64 E-value=5.7e-05 Score=70.37 Aligned_cols=200 Identities=18% Similarity=0.248 Sum_probs=124.9
Q ss_pred CCCceEEEEcCCCCCCCCCeE-EEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307 71 PYTPTNIAFFPSEETLNPDIV-ATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~l-a~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~ 149 (339)
.+.|.++.|..+.. .++ +++.+.|.+-|..+...+...... ..|.+++|+| |++.++..+..+++.
T Consensus 68 d~~i~s~~fl~d~~----~i~v~~~~G~iilvd~et~~~eivg~vd--------~GI~aaswS~-Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN----SICVITALGDIILVDPETLELEIVGNVD--------NGISAASWSP-DEELLALITGRQTLL 134 (1265)
T ss_pred CcceEEEEEecccc----eEEEEecCCcEEEEcccccceeeeeecc--------CceEEEeecC-CCcEEEEEeCCcEEE
Confidence 36899999998884 343 344457777788877644444333 5799999998 999999988888877
Q ss_pred EEECC----C-------------------Ceeeeeeec---------------------cCCceeEEEec-CCcEEEEE-
Q 040307 150 IWDID----R-------------------EILETQLVA---------------------HDREVYDISWG-GFNVFASV- 183 (339)
Q Consensus 150 i~d~~----~-------------------~~~~~~~~~---------------------~~~~v~~~~~~-~~~~l~~~- 183 (339)
+-+-. . |+....+.+ -.+.=+.+.|- +|.++++.
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 63320 0 011111111 01122458898 89899883
Q ss_pred ----eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCC--ceEEEecCC
Q 040307 184 ----SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTN--PVVVLSKHE 255 (339)
Q Consensus 184 ----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~--~~~~~~~~~ 255 (339)
...+.|++||-. +. ....... ..+.-.+++|-| .|..+++-..+.. .|.+|.-+.... ....+....
T Consensus 215 ~~~~~~~RkirV~drE-g~-Lns~se~--~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GA-LNSTSEP--VEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EeccCCceeEEEeccc-ch-hhcccCc--ccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 233789999977 32 2222222 223456899999 8898888544332 288887543211 111122233
Q ss_pred CCeeEEEeccCCCCeEEE---EeCCCcEEEEEecCCC
Q 040307 256 GSVNGISWAPLYGRRLCS---VADDSRALIWEVVGPG 289 (339)
Q Consensus 256 ~~v~~~~~~p~~~~~l~~---~~~dg~v~iwd~~~~~ 289 (339)
..|..++|+.+++ +|++ ......|++|-+.+..
T Consensus 290 ~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 4589999999994 8877 4445559999887754
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.63 E-value=0.00013 Score=63.23 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=88.5
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE----eCCCeE----EEEECCCCee----eeeeec
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC----SVDTTC----VIWDIDREIL----ETQLVA 164 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----~~d~~v----~i~d~~~~~~----~~~~~~ 164 (339)
.+.++.+...+.+.+...... ....++.|+-.++..+.+. +.+|.+ .+|++...+. +..+ .
T Consensus 185 Nl~L~~~~~~klEvL~yirTE------~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-p 257 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTE------NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-P 257 (545)
T ss_pred cEEEEEecCCcEEEEEEEEec------CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-e
Confidence 344444444443344333332 2345777875455555553 234433 3566654432 2222 4
Q ss_pred cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
....+.+++++ +.+.++.|+.||.|.+||...+..... . ..-.++.++|+| +|.++++|+..|. +.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--k---a~~~P~~iaWHp-~gai~~V~s~qGe-lQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--K---AEFIPTLIAWHP-DGAIFVVGSEQGE-LQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--e---ecccceEEEEcC-CCcEEEEEcCCce-EEEEEeec
Confidence 67789999999 788999999999999999987643222 1 234678999999 9999999999998 99999865
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.61 E-value=6.8e-05 Score=65.06 Aligned_cols=255 Identities=11% Similarity=-0.033 Sum_probs=135.5
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeE
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELK 111 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~ 111 (339)
..+.+++ .++.+.-+ +.++++..-. ......+.+--.-.++ .+++..++ .+.-+|.++++ .+
T Consensus 121 ~~v~v~~----~~g~l~al--d~~tG~~~W~----~~~~~~~~ssP~v~~~-----~v~v~~~~g~l~ald~~tG~--~~ 183 (394)
T PRK11138 121 GKVYIGS----EKGQVYAL--NAEDGEVAWQ----TKVAGEALSRPVVSDG-----LVLVHTSNGMLQALNESDGA--VK 183 (394)
T ss_pred CEEEEEc----CCCEEEEE--ECCCCCCccc----ccCCCceecCCEEECC-----EEEEECCCCEEEEEEccCCC--Ee
Confidence 3455666 57888884 4444443331 1112222211111144 45555445 89999999887 33
Q ss_pred EEeecCCC----ccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC----Cc---eeEEEec---CC
Q 040307 112 SLLNSNKT----SEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD----RE---VYDISWG---GF 177 (339)
Q Consensus 112 ~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~---v~~~~~~---~~ 177 (339)
-....... .....++ . .+..++.++.+|.+..+|..+++.+....... .. ...+.-+ .+
T Consensus 184 W~~~~~~~~~~~~~~~sP~----v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 184 WTVNLDVPSLTLRGESAPA----T---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG 256 (394)
T ss_pred eeecCCCCcccccCCCCCE----E---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC
Confidence 33322110 0000121 1 12356677789999999999988665542110 00 0011111 15
Q ss_pred cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC-C
Q 040307 178 NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-G 256 (339)
Q Consensus 178 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-~ 256 (339)
..++.++.++.+..+|..+++..=.. .. .....+.. .+..+++++.++. +..+|..+ ++.+-+...-. .
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~-~~----~~~~~~~~---~~~~vy~~~~~g~-l~ald~~t-G~~~W~~~~~~~~ 326 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKR-EY----GSVNDFAV---DGGRIYLVDQNDR-VYALDTRG-GVELWSQSDLLHR 326 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEee-cC----CCccCcEE---ECCEEEEEcCCCe-EEEEECCC-CcEEEcccccCCC
Confidence 56777778999999999988632111 11 11112222 3456777778887 99999876 33333222111 1
Q ss_pred CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEE-EEecCCCCceEEEecCCeE
Q 040307 257 SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINV-VRWSPLELDWIAIAFVNKL 334 (339)
Q Consensus 257 ~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~-~~~~p~~~~l~~~~~d~~v 334 (339)
...+... .+ ..|+.++.+|.+.+.|..+++ .+.... ....+.+ ... .++ .|+.++.||.|
T Consensus 327 ~~~sp~v--~~-g~l~v~~~~G~l~~ld~~tG~-------------~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~l 388 (394)
T PRK11138 327 LLTAPVL--YN-GYLVVGDSEGYLHWINREDGR-------------FVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGTV 388 (394)
T ss_pred cccCCEE--EC-CEEEEEeCCCEEEEEECCCCC-------------EEEEEEcCCCcceeCCEE-ECC-EEEEEeCCceE
Confidence 1222222 13 378888999999999998877 332221 1122221 122 233 68888999999
Q ss_pred EEEeC
Q 040307 335 QLLKV 339 (339)
Q Consensus 335 ~~w~v 339 (339)
..+++
T Consensus 389 ~~~~~ 393 (394)
T PRK11138 389 YAITR 393 (394)
T ss_pred EEEeC
Confidence 88763
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.60 E-value=0.00011 Score=58.85 Aligned_cols=214 Identities=11% Similarity=-0.044 Sum_probs=122.2
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG 176 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 176 (339)
.|..||..+++ .+-...... .. ......... ++..+++++.++.|..||..+++.+..+.. ...+.......
T Consensus 4 ~l~~~d~~tG~--~~W~~~~~~--~~-~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~ 75 (238)
T PF13360_consen 4 TLSALDPRTGK--ELWSYDLGP--GI-GGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD 75 (238)
T ss_dssp EEEEEETTTTE--EEEEEECSS--SC-SSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE
T ss_pred EEEEEECCCCC--EEEEEECCC--CC-CCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec
Confidence 67788887776 333332210 00 222221221 456777778999999999999998877754 33222212223
Q ss_pred CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCC-CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC
Q 040307 177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQD-CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE 255 (339)
Q Consensus 177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~ 255 (339)
++.++.+..++.++.+|..+++..-......... .......... .+..++++..++. |..+|.++ ++.+.......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-l~~~d~~t-G~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGK-LVALDPKT-GKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSE-EEEEETTT-TEEEEEEESST
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCc-EEEEecCC-CcEEEEeecCC
Confidence 5566667788899999999988554422221111 1222333332 4677777777777 99999987 55666665533
Q ss_pred CC----------e-eEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307 256 GS----------V-NGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324 (339)
Q Consensus 256 ~~----------v-~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 324 (339)
.. + ..+.+. ++ .+..++.++.+.-+|+.+++ ..-... ...+..+ ..+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~d~~tg~-------------~~w~~~-~~~~~~~-~~~~~~~ 214 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAVDLATGE-------------KLWSKP-ISGIYSL-PSVDGGT 214 (238)
T ss_dssp T-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEEETTTTE-------------EEEEEC-SS-ECEC-EECCCTE
T ss_pred CCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEEECCCCC-------------EEEEec-CCCccCC-ceeeCCE
Confidence 22 1 222222 33 66667767753333888776 222112 2223331 2356666
Q ss_pred eEEEecCCeEEEEeC
Q 040307 325 WIAIAFVNKLQLLKV 339 (339)
Q Consensus 325 l~~~~~d~~v~~w~v 339 (339)
++.++.++.|..|++
T Consensus 215 l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 215 LYVTSSDGRLYALDL 229 (238)
T ss_dssp EEEEETTTEEEEEET
T ss_pred EEEEeCCCEEEEEEC
Confidence 777778999998874
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.60 E-value=0.00016 Score=57.48 Aligned_cols=197 Identities=9% Similarity=0.037 Sum_probs=111.8
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc--
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKER-- 199 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-- 199 (339)
..+.+++|+|.++.++++....+.|..++. +++.++.+.-. .+..-.|++. ++.++++.-.++.+.++++.....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 579999999955678888888999998897 47777776433 2567889999 566666555689999999844321
Q ss_pred -e---eeEE-eC-CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC--CCCceEEE--------ecCCCCeeEEEe
Q 040307 200 -S---TIIY-EN-PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF--PTNPVVVL--------SKHEGSVNGISW 263 (339)
Q Consensus 200 -~---~~~~-~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~--~~~~~~~~--------~~~~~~v~~~~~ 263 (339)
. ..+. .. ..+...+-.++|+|..++++ ++-...- ..+|.++. ....+... ......+.++++
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCC-hhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1 1111 11 12445689999999444444 4555554 66676653 11111111 112346789999
Q ss_pred ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee---c--c-----cceeEEEEecCCCCceEEEecCCe
Q 040307 264 APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY---Q--S-----MAEINVVRWSPLELDWIAIAFVNK 333 (339)
Q Consensus 264 ~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~--~-----~~~i~~~~~~p~~~~l~~~~~d~~ 333 (339)
+|..+.+++....+..|..+|. .+. ++... . | -...-.|+|.++|. |..++.-+.
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~-~G~-------------~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNl 243 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDR-QGR-------------VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNL 243 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-T-T---------------EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTE
T ss_pred cCCCCeEEEEECCCCeEEEECC-CCC-------------EEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCce
Confidence 9987667777778888888883 333 22111 1 1 13577899999995 777777777
Q ss_pred EEEEe
Q 040307 334 LQLLK 338 (339)
Q Consensus 334 v~~w~ 338 (339)
..+|+
T Consensus 244 fy~f~ 248 (248)
T PF06977_consen 244 FYRFE 248 (248)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 66653
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.6e-07 Score=72.58 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=106.9
Q ss_pred EEEEECCCCeeeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307 148 CVIWDIDREILETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF 225 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 225 (339)
+++.+..+.+....+..+...|.+++|+| ..++..++.+..|+|.|+++.......... ..+++++|.-++.++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----CCceeeeeccCCcce
Confidence 55555555555555667888999999994 447889999999999999998744443322 689999999878888
Q ss_pred EEEEeeCCCeEEEEecCCCCCceEEEecC--CCCeeEEEe------ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307 226 MATVGMDSNKVVVLDIRFPTNPVVVLSKH--EGSVNGISW------APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP 297 (339)
Q Consensus 226 l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~------~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 297 (339)
|++|-.+|. |.|||++.+..++..+.+. ..+|..++. .+.+ .+|+....+ +..|++.....
T Consensus 251 IYaGl~nG~-VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~------- 319 (463)
T KOG1645|consen 251 IYAGLQNGM-VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAE------- 319 (463)
T ss_pred eEEeccCce-EEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhcccc-------
Confidence 888888888 9999999988777666542 234444433 2334 255555543 56777766551
Q ss_pred CCcccceeeecccceeEEEEecCCCCceE
Q 040307 298 SGDVEPELCYQSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 326 (339)
...+....+..+...+++.++-.+.++
T Consensus 320 --~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 320 --CLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred --CCCcccccCCCcceeeeeecCccceEE
Confidence 122333334455555666665444443
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.55 E-value=0.00025 Score=57.46 Aligned_cols=232 Identities=13% Similarity=0.069 Sum_probs=136.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCC-eEEEEecCCCCCcccceeeEeecCCCC--ceEEEEcCCCCCCCCCeEE
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSN-KIELVNFNPETSDFSADNRLIFDHPYT--PTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~~~~~~la 92 (339)
.+.....++.+|. .+..++.+- ..| ...+||.. ++.... .+ ....+. -=...||+|+ ++|.
T Consensus 3 lP~RgH~~a~~p~--~~~avafaR----RPG~~~~v~D~~--~g~~~~--~~-~a~~gRHFyGHg~fs~dG-----~~Ly 66 (305)
T PF07433_consen 3 LPARGHGVAAHPT--RPEAVAFAR----RPGTFALVFDCR--TGQLLQ--RL-WAPPGRHFYGHGVFSPDG-----RLLY 66 (305)
T ss_pred CCccccceeeCCC--CCeEEEEEe----CCCcEEEEEEcC--CCceee--EE-cCCCCCEEecCEEEcCCC-----CEEE
Confidence 3456678888994 267777777 344 45564443 333332 11 111111 1134799999 6766
Q ss_pred EeC-C------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe------------------CCCe
Q 040307 93 TSG-D------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS------------------VDTT 147 (339)
Q Consensus 93 ~~~-~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------~d~~ 147 (339)
+.- + .|-|||.. .....+..+..+- -.-..+.+.| +++.|+.+. .+.+
T Consensus 67 tTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~G-----IGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAA-RGYRRIGEFPSHG-----IGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred EeccccCCCcEEEEEEECc-CCcEEEeEecCCC-----cChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 652 1 89999998 3344667777665 3344677888 887777653 2335
Q ss_pred EEEEECCCCeeeee--e--eccCCceeEEEec-CCcEEEEEeCCCc-------EEEEECCCCcceeeEEeC----CCCCC
Q 040307 148 CVIWDIDREILETQ--L--VAHDREVYDISWG-GFNVFASVSGDCS-------VRVFDLRDKERSTIIYEN----PVQDC 211 (339)
Q Consensus 148 v~i~d~~~~~~~~~--~--~~~~~~v~~~~~~-~~~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~----~~~~~ 211 (339)
+.+.|..+++.+.+ + .-|...|..+++. ++..++..-..+. |-+++.... ...+... ..-..
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~ 217 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNG 217 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCC
Confidence 66677778876665 3 2366789999998 5544443332221 223332221 1111110 01236
Q ss_pred CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307 212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR 279 (339)
Q Consensus 212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 279 (339)
.+-+|++++ ++..+++.+-.++.+.+||..+ +..+.... -..+..++-.+++ ++++.+. |.
T Consensus 218 Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~--l~D~cGva~~~~~--f~~ssG~-G~ 278 (305)
T PF07433_consen 218 YIGSIAADR-DGRLIAVTSPRGGRVAVWDAAT-GRLLGSVP--LPDACGVAPTDDG--FLVSSGQ-GQ 278 (305)
T ss_pred ceEEEEEeC-CCCEEEEECCCCCEEEEEECCC-CCEeeccc--cCceeeeeecCCc--eEEeCCC-cc
Confidence 789999997 8888877777777699999887 54444433 2346677766665 5555543 44
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=7.8e-05 Score=67.05 Aligned_cols=208 Identities=10% Similarity=0.135 Sum_probs=127.0
Q ss_pred EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCC-ceEEEEcCCCCCCCCCeEEEeC-C-----
Q 040307 24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYT-PTNIAFFPSEETLNPDIVATSG-D----- 96 (339)
Q Consensus 24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~~~la~~~-~----- 96 (339)
+|++. +..++.|+ .+|.|.+ ++..-.... .+ ..++.. |..+....+. .+|++-+ |
T Consensus 30 c~~s~---~~~vvigt----~~G~V~~--Ln~s~~~~~---~f-qa~~~siv~~L~~~~~~-----~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 30 CCSSS---TGSVVIGT----ADGRVVI--LNSSFQLIR---GF-QAYEQSIVQFLYILNKQ-----NFLFSVGEDEQGNP 91 (933)
T ss_pred EEcCC---CceEEEee----ccccEEE--ecccceeee---hh-eecchhhhhHhhcccCc-----eEEEEEeecCCCCc
Confidence 57778 88999999 6999988 554322211 11 233444 5555444433 5776654 2
Q ss_pred -cEEEEeecCCc----ceeE--EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC--CCeeee-ee-ecc
Q 040307 97 -SLRLWEIHDDR----TELK--SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID--REILET-QL-VAH 165 (339)
Q Consensus 97 -~i~iw~~~~~~----~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~--~~~~~~-~~-~~~ 165 (339)
.++||+++..+ +.+. ..+..+....-..++.+++.+. +-+.+|+|-.+|.|..+.-+ ..+-.+ .+ ...
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence 69999997642 2233 1222222222236889999996 78899999999999988532 111111 11 234
Q ss_pred CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
..+|+.+.+. ++..++.+..-..|.+|.+.... +.. .....+...+.|..+++..++ +++++... +.+||...
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~-~~ld~~G~~lnCss~~~~t~q-fIca~~e~--l~fY~sd~- 244 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSL-KVLDNNGISLNCSSFSDGTYQ-FICAGSEF--LYFYDSDG- 244 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecCCC-cce-eeeccCCccceeeecCCCCcc-EEEecCce--EEEEcCCC-
Confidence 5789999999 66653333445679999998554 222 223346788999999874443 44444444 99999875
Q ss_pred CCceEEEe-cCCC
Q 040307 245 TNPVVVLS-KHEG 256 (339)
Q Consensus 245 ~~~~~~~~-~~~~ 256 (339)
..+...+. +|..
T Consensus 245 ~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 245 RGPCFAFEVGEKK 257 (933)
T ss_pred cceeeeecCCCeE
Confidence 44445555 5543
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=6e-05 Score=67.74 Aligned_cols=195 Identities=12% Similarity=0.097 Sum_probs=123.0
Q ss_pred EEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCC-EEEEEEcCCCCCEEEEEeCCC-----eEEEE
Q 040307 78 AFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSA-ITSFDWAGFDTRRVATCSVDT-----TCVIW 151 (339)
Q Consensus 78 ~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~d~-----~v~i~ 151 (339)
.|++.+ ..++.|+...+||-++..- .....++.+. .. |..+ |.-...++|++-++|+ .|++|
T Consensus 30 c~~s~~-----~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~-----~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 30 CCSSST-----GSVVIGTADGRVVILNSSF-QLIRGFQAYE-----QSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred EEcCCC-----ceEEEeeccccEEEecccc-eeeehheecc-----hhhhhHh-hcccCceEEEEEeecCCCCceEEEEe
Confidence 356777 6888887655555555543 2446666655 44 3333 3322346788877765 48999
Q ss_pred ECCCC------eee---eeee----ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCC--CcceeeEEeCCCCCCCeEE
Q 040307 152 DIDRE------ILE---TQLV----AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRD--KERSTIIYENPVQDCPLLR 215 (339)
Q Consensus 152 d~~~~------~~~---~~~~----~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~v~~ 215 (339)
+++.- .++ +.+. ....++.+++.+ +-+.+|+|-.+|.|.++.-.- .+....... ...+.+|+.
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITg 176 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITG 176 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCCcee
Confidence 98643 223 1111 134578899999 788999999999999885321 111122222 224679999
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+++.. ++..++....... |.+|.+.........+..|...+++.++++..+ .+++++ +..+.+|+....+
T Consensus 177 L~~~~-d~~s~lFv~Tt~~-V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 177 LALRS-DGKSVLFVATTEQ-VMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred eEEec-CCceeEEEEecce-eEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEec-CceEEEEcCCCcc
Confidence 99985 6665333333344 999999853322445778888999999998864 344444 3578999988766
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.53 E-value=0.0002 Score=62.16 Aligned_cols=221 Identities=15% Similarity=0.173 Sum_probs=116.8
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
...-.+..+.++|++ ++++.+++ .-.||...... ... . +....+.|.+ + +.+|+-...++
T Consensus 30 ~~~~~p~~ls~npng-----r~v~V~g~geY~iyt~~~~r--~k~--~--------G~g~~~vw~~-~-n~yAv~~~~~~ 90 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNG-----RFVLVCGDGEYEIYTALAWR--NKA--F--------GSGLSFVWSS-R-NRYAVLESSST 90 (443)
T ss_dssp E-SS--SEEEE-TTS-----SEEEEEETTEEEEEETTTTE--EEE--E--------EE-SEEEE-T-S-SEEEEE-TTS-
T ss_pred CCCcCCeeEEECCCC-----CEEEEEcCCEEEEEEccCCc--ccc--c--------CceeEEEEec-C-ccEEEEECCCe
Confidence 445568999999999 78888776 77777733322 222 1 2345788986 4 45777777889
Q ss_pred EEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 148 CVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
|.|+.--+.+....+.. ...+..+-. |.+|...+.+ .|.+||..+++....+.. .+|..+.|++ ++++++
T Consensus 91 I~I~kn~~~~~~k~i~~-~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~-~g~~va 160 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL-PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSD-DGELVA 160 (443)
T ss_dssp EEEEETTEE-TT------SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-T-TSSEEE
T ss_pred EEEEEcCccccceEEcC-CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEEC-CCCEEE
Confidence 99964322322223332 122333322 7777777655 799999999875554432 2489999997 899999
Q ss_pred EEeeCCCeEEEEecCCC--------C--CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307 228 TVGMDSNKVVVLDIRFP--------T--NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP 297 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~--------~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 297 (339)
..+.+. +.+++.... + ..+..+..-...|.+..|..+ -++.|... .++. +-.++
T Consensus 161 l~t~~~--i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkY--l~~Ge-------- 224 (443)
T PF04053_consen 161 LVTKDS--IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKY--LVNGE-------- 224 (443)
T ss_dssp EE-S-S--EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEE--EETTE--------
T ss_pred EEeCCe--EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEE--EEcCC--------
Confidence 888775 777765431 0 123444333568999999876 35555443 6666 55554
Q ss_pred CCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 298 SGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...+..-..++.=+...|....++....|+.+..+.+
T Consensus 225 -----~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 225 -----TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp -----EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred -----cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 2233333456666777776666777778877776643
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.6e-06 Score=71.74 Aligned_cols=205 Identities=11% Similarity=0.100 Sum_probs=143.4
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecC-CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHD-DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
+-|.+.|+.+.-.-. +++.+++ | .++.|.-.. ...+.+..+..|- ..|.+++.+- ++-++.+.+.
T Consensus 6 ymhrd~i~hv~~tka------~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL-----~~I~sl~~S~-dg~L~~Sv~d 73 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKA------KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL-----GVILSLAVSY-DGWLFRSVED 73 (558)
T ss_pred hcccceeeeEeeehh------heEEeeecchhhhhcCCCCccceeehhhhHHHH-----HHHHhhhccc-cceeEeeccC
Confidence 568888888765543 5888887 5 999998655 2234555566666 7888888885 8899999777
Q ss_pred -CCeEEEEECCCCeeeeeeeccCCceeEEEec--CC----cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEE
Q 040307 145 -DTTCVIWDIDREILETQLVAHDREVYDISWG--GF----NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLE 217 (339)
Q Consensus 145 -d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 217 (339)
|..++++|+++-..+.-++. ......+.|. ++ .+-++...++.+.++|-+...+....+.. .|..+|..+.
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-lH~sPV~~i~ 151 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-LHFSPVKKIR 151 (558)
T ss_pred cccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc-cccCceEEEE
Confidence 99999999987654332221 1111223333 44 23334456789999998877644443332 3778999999
Q ss_pred EecCCCCeEEEEeeCCCeEEEEecCCC-CCceE-------------EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307 218 WNKADPRFMATVGMDSNKVVVLDIRFP-TNPVV-------------VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~-~~~~~-------------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw 283 (339)
++| .+..+++....|. |.-|..... +.|.. .+.--+....++.|+|++ ..+.+-+.|..|+++
T Consensus 152 y~q-a~Ds~vSiD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 152 YNQ-AGDSAVSIDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGF 228 (558)
T ss_pred eec-cccceeeccccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEE
Confidence 997 8888888888888 999987631 11111 111124467899999999 699999999999999
Q ss_pred EecCCC
Q 040307 284 EVVGPG 289 (339)
Q Consensus 284 d~~~~~ 289 (339)
++.+++
T Consensus 229 ~~KtGk 234 (558)
T KOG0882|consen 229 VFKTGK 234 (558)
T ss_pred Eeccch
Confidence 999887
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.9e-07 Score=83.45 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=114.2
Q ss_pred eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC
Q 040307 109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC 187 (339)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 187 (339)
+....+..+. ...+|++|+. +.+.|+.|+..|.|+++++.+|........|.+.|+.+.-+ ++..+++.+.-.
T Consensus 1092 r~w~~frd~~-----~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDET-----ALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccc-----cceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence 3445555555 7889999996 88999999999999999999999888999999999999999 777766655433
Q ss_pred --cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---CCCCeeEEE
Q 040307 188 --SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---HEGSVNGIS 262 (339)
Q Consensus 188 --~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~ 262 (339)
-..+|++.+.-.+...+. .-.++.|+. .-+.-+.|+.... ..+||+.+.......+.. ....-+...
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~------ed~~vkFsn-~~q~r~~gt~~d~-a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFD------EDKAVKFSN-SLQFRALGTEADD-ALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred CchHHHhccccccCcccccc------ccceeehhh-hHHHHHhcccccc-eEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 467899887443333332 345788875 4444445555555 999999984433332332 122346789
Q ss_pred eccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 263 WAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
|+|+. .+++- || .+||++..+
T Consensus 1238 FsP~D-~LIln---dG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1238 FSPCD-TLILN---DG--VLWDVRIPE 1258 (1516)
T ss_pred cCCCc-ceEee---Cc--eeeeeccHH
Confidence 99998 46653 34 489988765
No 330
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.51 E-value=0.0004 Score=58.48 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=126.7
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEE---EEcCC---CCCEEEEEeC----------CCeEEEEECCCC----
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSF---DWAGF---DTRRVATCSV----------DTTCVIWDIDRE---- 156 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~---~~~~l~~~~~----------d~~v~i~d~~~~---- 156 (339)
.|++.|..+.+......+... ..++++ .+... ...+|+.|+. .|.|.++++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~ 76 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPN------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN 76 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETT------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred EEEEEeCCCCeEEEEEECCCC------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence 467777766652233333332 234433 33321 1467777753 289999999874
Q ss_pred eeeeee--eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 157 ILETQL--VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 157 ~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
..+..+ ....++|++++-..+. |+.+. .+.|.+|++...+ ........ ....+.++... ++++++|....
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~--~~~~i~sl~~~---~~~I~vgD~~~ 149 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSFNGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD--SPFYITSLSVF---KNYILVGDAMK 149 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEETTE-EEEEE-TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEE---TTEEEEEESSS
T ss_pred eEEEEEEEEeecCcceEhhhhCCE-EEEee-cCEEEEEEccCcccchhhheec--ceEEEEEEecc---ccEEEEEEccc
Confidence 122222 2457889999877555 44443 4789999999888 33332222 23466777664 46888888888
Q ss_pred CeEEEEecCCCCCceEEEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC-cccceeeeccc
Q 040307 234 NKVVVLDIRFPTNPVVVLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG-DVEPELCYQSM 310 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~ 310 (339)
+ +.++..+.....+..+.. ....++++.|-+++ ..++.+..+|.+.++.......... ... .+.....+...
T Consensus 150 s-v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~---~~~~~L~~~~~f~lg 224 (321)
T PF03178_consen 150 S-VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSR---DGDPKLERISSFHLG 224 (321)
T ss_dssp S-EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTT---TTTTBEEEEEEEE-S
T ss_pred C-EEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccc---cccccceeEEEEECC
Confidence 8 888865542332333322 34568899999887 4999999999999999975431100 000 22233444556
Q ss_pred ceeEEE---EecCC--CC------ceEEEecCCeEEE
Q 040307 311 AEINVV---RWSPL--EL------DWIAIAFVNKLQL 336 (339)
Q Consensus 311 ~~i~~~---~~~p~--~~------~l~~~~~d~~v~~ 336 (339)
..|+++ +..|. +. .++.++.+|.|-.
T Consensus 225 ~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 225 DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 778888 66662 22 2777888888763
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.50 E-value=0.00016 Score=61.97 Aligned_cols=268 Identities=13% Similarity=0.077 Sum_probs=132.1
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcE
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSL 98 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i 98 (339)
.|.++.|+++ ..-||+|. ..|.|.||+|......-.. . . ..-....+.+-.-+..+..|.--++.+
T Consensus 3 ~v~~vs~a~~---t~Elav~~----~~GeVv~~k~~~n~~~~~~--~--~---~~~~~~~~~~~~~~~~~~~l~di~~r~ 68 (395)
T PF08596_consen 3 SVTHVSFAPE---TLELAVGL----ESGEVVLFKFGKNQNYGNR--E--Q---PPDLDYNFRRFSLNNSPGKLTDISDRA 68 (395)
T ss_dssp -EEEEEEETT---TTEEEEEE----TTS-EEEEEEEE-------------------------S--GGGSS-SEEE-GGG-
T ss_pred eEEEEEecCC---CceEEEEc----cCCcEEEEEcccCCCCCcc--C--C---CcccCcccccccccCCCcceEEehhhC
Confidence 5889999999 88899999 7999999999764322100 0 0 001111111111000002222221100
Q ss_pred EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--ec------cCCcee
Q 040307 99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--VA------HDREVY 170 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~------~~~~v~ 170 (339)
-- ++.. .+.+...++... ++|++++.| +=.++|.|.++|.+.|.|++....+..- .. ....++
T Consensus 69 ~~-~~~~-gf~P~~l~~~~~-----g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt 139 (395)
T PF08596_consen 69 PP-SLKE-GFLPLTLLDAKQ-----GPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT 139 (395)
T ss_dssp -T-T-SE-EEEEEEEE---S------SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE
T ss_pred Cc-cccc-ccCchhheeccC-----CcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee
Confidence 00 0001 133555555545 899999997 6789999999999999999887755542 12 234678
Q ss_pred EEEec------C---CcEEEEEeCCCcEEEEECCC--Cc-ceeeEEeC-CCCCCCeEEEE-EecCC--------------
Q 040307 171 DISWG------G---FNVFASVSGDCSVRVFDLRD--KE-RSTIIYEN-PVQDCPLLRLE-WNKAD-------------- 222 (339)
Q Consensus 171 ~~~~~------~---~~~l~~~~~d~~i~i~d~~~--~~-~~~~~~~~-~~~~~~v~~~~-~~p~~-------------- 222 (339)
++.|. + .-.+++|...|.+.+|.+-- .. ........ ..+..++..+. ++.++
T Consensus 140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l 219 (395)
T PF08596_consen 140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL 219 (395)
T ss_dssp EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence 88887 1 24788889999999998752 11 11111111 12445665554 32211
Q ss_pred ------CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec-----cCCCCeEEEEeCCCcEEEEEecCCCCC
Q 040307 223 ------PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA-----PLYGRRLCSVADDSRALIWEVVGPGYR 291 (339)
Q Consensus 223 ------~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~~~~~dg~v~iwd~~~~~~~ 291 (339)
..++++++. .. ++++...+ .+...+.....-....+.+- ..+ ..|++-..+|.+++|.+...+
T Consensus 220 ~~g~~i~g~vVvvSe-~~-irv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lk-- 293 (395)
T PF08596_consen 220 SKGISIPGYVVVVSE-SD-IRVFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLK-- 293 (395)
T ss_dssp GGT----EEEEEE-S-SE-EEEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT----
T ss_pred ccCCCcCcEEEEEcc-cc-eEEEeCCC-CcccceeeccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCch--
Confidence 124444444 33 99998876 33333333222233344553 234 688888899999999999887
Q ss_pred CCCCCCCCcccceeeec-----ccceeEEEEecCCCCceE
Q 040307 292 SGNGGPSGDVEPELCYQ-----SMAEINVVRWSPLELDWI 326 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~p~~~~l~ 326 (339)
.+.... ....+....++++|..++
T Consensus 294 -----------ei~~~~l~~~~d~~~~~~ssis~~Gdi~~ 322 (395)
T PF08596_consen 294 -----------EIKSVSLPPPLDSRRLSSSSISRNGDIFY 322 (395)
T ss_dssp -----------EEEEEE-SS---HHHHTT-EE-TTS-EEE
T ss_pred -----------HhhcccCCCccccccccccEECCCCCEEE
Confidence 332111 223455677788887433
No 332
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.43 E-value=0.00044 Score=55.46 Aligned_cols=207 Identities=15% Similarity=0.080 Sum_probs=117.3
Q ss_pred CCCceeeeeeccCCeeEEE--eeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307 6 EKKPGVHTYMAQWPISTVA--WSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE 83 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~i~--~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 83 (339)
.+++.+.++....+..... ..++ +..+.+++ .++.|..|+ ..+++..- . ......+.......++
T Consensus 11 ~tG~~~W~~~~~~~~~~~~~~~~~~---~~~v~~~~----~~~~l~~~d--~~tG~~~W--~--~~~~~~~~~~~~~~~~ 77 (238)
T PF13360_consen 11 RTGKELWSYDLGPGIGGPVATAVPD---GGRVYVAS----GDGNLYALD--AKTGKVLW--R--FDLPGPISGAPVVDGG 77 (238)
T ss_dssp TTTEEEEEEECSSSCSSEEETEEEE---TTEEEEEE----TTSEEEEEE--TTTSEEEE--E--EECSSCGGSGEEEETT
T ss_pred CCCCEEEEEECCCCCCCccceEEEe---CCEEEEEc----CCCEEEEEE--CCCCCEEE--E--eeccccccceeeeccc
Confidence 3577777776633233333 3445 55666666 589999955 44444443 1 2223333222333444
Q ss_pred CCCCCCeEEEeCC-cEEEEeecCCcceeEEEe-ecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 84 ETLNPDIVATSGD-SLRLWEIHDDRTELKSLL-NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 84 ~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
.+++...+ .++.+|..+++ .+... ................+ .++.++.+..++.|..+|+++|+.+..
T Consensus 78 -----~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 78 -----RVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp -----EEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred -----ccccccceeeeEecccCCcc--eeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 56655555 89999988887 44432 22110000011122222 467888888899999999999998877
Q ss_pred eeccCCce-----------eEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307 162 LVAHDREV-----------YDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG 230 (339)
Q Consensus 162 ~~~~~~~v-----------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 230 (339)
+....... ..+.+.++ .+..++.++.+..+|+.+++.. ...+ ...+..+ ..+ .+..|++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~---w~~~--~~~~~~~-~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL---WSKP--ISGIYSL-PSV-DGGTLYVTS 219 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE---EEEC--SS-ECEC-EEC-CCTEEEEEE
T ss_pred eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE---EEec--CCCccCC-cee-eCCEEEEEe
Confidence 75533221 22223334 6777777776444499998833 2221 1122221 233 667777777
Q ss_pred eCCCeEEEEecCCC
Q 040307 231 MDSNKVVVLDIRFP 244 (339)
Q Consensus 231 ~d~~~i~i~d~~~~ 244 (339)
.++. +..||++++
T Consensus 220 ~~~~-l~~~d~~tG 232 (238)
T PF13360_consen 220 SDGR-LYALDLKTG 232 (238)
T ss_dssp TTTE-EEEEETTTT
T ss_pred CCCE-EEEEECCCC
Confidence 7787 999999873
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.40 E-value=0.00062 Score=57.32 Aligned_cols=212 Identities=12% Similarity=0.084 Sum_probs=123.9
Q ss_pred ceeeeeec--cCCeeEEEeeecCC----cccEEEEeeec--cc---cC-CeEEEEecCCC-C--CcccceeeEeecCCCC
Q 040307 9 PGVHTYMA--QWPISTVAWSVRHD----RKSRLAVGSFL--ED---YS-NKIELVNFNPE-T--SDFSADNRLIFDHPYT 73 (339)
Q Consensus 9 ~~~~~~~~--~~~v~~i~~sp~~~----~~~~la~g~~~--~~---~~-~~i~i~~~~~~-~--~~~~~~~~~~~~~~~~ 73 (339)
+.+.++.. ...+.+++...-.. ...+|++|+.. ++ .. |.|.++++... . .++.. .......++
T Consensus 13 ~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~--i~~~~~~g~ 90 (321)
T PF03178_consen 13 EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL--IHSTEVKGP 90 (321)
T ss_dssp SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE--EEEEEESS-
T ss_pred eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE--EEEEeecCc
Confidence 34455443 34566665544211 15789998861 11 12 89999888774 1 23332 334466889
Q ss_pred ceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307 74 PTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD 152 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d 152 (339)
|++++-. ++ .++++.+..|.+|++...+ ......+... ..+.++... +++|+.|.....+.++.
T Consensus 91 V~ai~~~-~~-----~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~------~~i~sl~~~---~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 91 VTAICSF-NG-----RLVVAVGNKLYVYDLDNSKTLLKKAFYDSP------FYITSLSVF---KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEE-TT-----EEEEEETTEEEEEEEETTSSEEEEEEE-BS------SSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred ceEhhhh-CC-----EEEEeecCEEEEEEccCcccchhhheecce------EEEEEEecc---ccEEEEEEcccCEEEEE
Confidence 9999877 44 5666666699999999887 4444444433 467777765 46999999988888875
Q ss_pred CCC-Ceeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCC-------c-ceeeEEeCCCCCCCeEEE---E
Q 040307 153 IDR-EILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDK-------E-RSTIIYENPVQDCPLLRL---E 217 (339)
Q Consensus 153 ~~~-~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~-~~~~~~~~~~~~~~v~~~---~ 217 (339)
.+. ...+..+. .....++++.+- +++.++.+..+|.+.++..... . ........ +....|+++ .
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGS 234 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEE
Confidence 433 33233332 234567888887 6679999999999999987632 1 11211111 123456666 4
Q ss_pred EecC--CCC-----eEEEEeeCCCeEEEE
Q 040307 218 WNKA--DPR-----FMATVGMDSNKVVVL 239 (339)
Q Consensus 218 ~~p~--~~~-----~l~~~~~d~~~i~i~ 239 (339)
+.|. ... .++.++.+|. |.+.
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~-Ig~l 262 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGS-IGVL 262 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS--EEEE
T ss_pred eeecCCCCcccccceEEEEecCCE-EEEE
Confidence 4441 122 3777788888 6633
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=1.3e-05 Score=71.76 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=82.8
Q ss_pred ceEEEEcCCCCCCCCCeEEEeC------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 74 PTNIAFFPSEETLNPDIVATSG------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
.+-.+|+|.. .++|.++ +.|.||- +++++..-.+.+ -.+++++|+| ..-.|+.|-.-|.
T Consensus 18 sti~SWHPse-----PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------~hatSLCWHp-e~~vLa~gwe~g~ 82 (1416)
T KOG3617|consen 18 STISSWHPSE-----PLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------VHATSLCWHP-EEFVLAQGWEMGV 82 (1416)
T ss_pred ccccccCCCC-----ceeEEEEecCCCCceEEEEe-cCCCCCcccccc--------eehhhhccCh-HHHHHhhccccce
Confidence 3445799998 7888774 2777774 344422222222 3456899999 8788999999999
Q ss_pred EEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECC
Q 040307 148 CVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLR 195 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~ 195 (339)
+.+|...+.+.-.....|..+|..+.|+ +|+.++++..-|.+.+|...
T Consensus 83 ~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999988777655566799999999999 89999999999999999876
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.33 E-value=0.00084 Score=58.24 Aligned_cols=192 Identities=12% Similarity=0.139 Sum_probs=98.5
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-------eccCCce
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-------VAHDREV 169 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~~~~~v 169 (339)
.|+||+.... ++..+.-.. +.|.++.|.. ...|++-..||.++++|+. |+....+ .-....+
T Consensus 62 ~I~iys~sG~---ll~~i~w~~-----~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i 130 (410)
T PF04841_consen 62 SIQIYSSSGK---LLSSIPWDS-----GRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRI 130 (410)
T ss_pred EEEEECCCCC---EeEEEEECC-----CCEEEEEECC--CCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccc
Confidence 3889987665 444444433 6899999984 4556666789999999985 3321111 1111112
Q ss_pred eEEEec-CCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCCCCC------CCeEE-EEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 170 YDISWG-GFNVFASVSGDCSVRVFDLRDKE-RSTIIYENPVQD------CPLLR-LEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~------~~v~~-~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
....+. .| ++.-..++.+.+..-.... ........+... ..... ..++. +....+....++. +.+.+
T Consensus 131 ~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~-i~~i~ 206 (410)
T PF04841_consen 131 FAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGET-IYIID 206 (410)
T ss_pred cccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCE-EEEEE
Confidence 222222 23 3333344554444322211 111111110000 00001 12332 3333333344444 55444
Q ss_pred cCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec--ccceeEEEEe
Q 040307 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ--SMAEINVVRW 318 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~ 318 (339)
.... .. +. ..+++..++.||++ ++||.-..+|.+.+......+ ...... ......++.|
T Consensus 207 ~~~~-~~---i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~-------------~~~e~~~~~~~~p~~~~W 267 (410)
T PF04841_consen 207 ENSF-KQ---ID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSE-------------KLCEFDTDSKSPPKQMAW 267 (410)
T ss_pred cccc-cc---cc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccc-------------eeEEeecCcCCCCcEEEE
Confidence 3321 11 22 24689999999999 699999999999988765554 222222 2345667777
Q ss_pred cCCC
Q 040307 319 SPLE 322 (339)
Q Consensus 319 ~p~~ 322 (339)
+-++
T Consensus 268 CG~d 271 (410)
T PF04841_consen 268 CGND 271 (410)
T ss_pred ECCC
Confidence 7665
No 336
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.29 E-value=0.00059 Score=59.28 Aligned_cols=137 Identities=10% Similarity=-0.081 Sum_probs=85.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307 136 TRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLR 215 (339)
Q Consensus 136 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 215 (339)
+..++.++.+|.+..+|..+++.+..... . ....+.. .++.++.++.++.+..+|..+++..=..... ......+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY-G-SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC-C-CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccC
Confidence 45666777899999999999987655431 1 1122223 3567777788999999999887632111110 1112222
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeE-EEeccCCCCeEEEEeCCCcEEEEEe
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNG-ISWAPLYGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg~v~iwd~ 285 (339)
... .+..+++++.+|. +++.|..+ ++.+.+.......+.+ ..+ .+ ..|+.++.||.|..++.
T Consensus 331 p~v---~~g~l~v~~~~G~-l~~ld~~t-G~~~~~~~~~~~~~~s~P~~--~~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 331 PVL---YNGYLVVGDSEGY-LHWINRED-GRFVAQQKVDSSGFLSEPVV--AD-DKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE---ECCEEEEEeCCCE-EEEEECCC-CCEEEEEEcCCCcceeCCEE--EC-CEEEEEeCCceEEEEeC
Confidence 233 2456778888888 99999987 5666655543333322 222 23 37888899999888764
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.26 E-value=0.0016 Score=57.97 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=69.5
Q ss_pred CCcEEEEEeCCCcEEEEECCC----C-cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCCCC---
Q 040307 176 GFNVFASVSGDCSVRVFDLRD----K-ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPTN--- 246 (339)
Q Consensus 176 ~~~~l~~~~~d~~i~i~d~~~----~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~~~--- 246 (339)
++++... .++.|.+.|.++ . +....+.. ......++++| +|+++++++. +.. +.|+|+.+...
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSP-DGkylyVanklS~t-VSVIDv~k~k~~~~ 358 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSP-DGKYFIANGKLSPT-VTVIDVRKLDDLFD 358 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECC-CCCEEEEeCCCCCc-EEEEEChhhhhhhh
Confidence 3554444 367899999998 2 32222222 25678999999 7887766655 555 99999987432
Q ss_pred --------ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 247 --------PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 247 --------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
...+..- ...-...+|.++| +...|-.-|..|..|++..
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 1222222 2234578899998 5888888999999999987
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.0016 Score=51.93 Aligned_cols=198 Identities=12% Similarity=0.160 Sum_probs=106.4
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT 146 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 146 (339)
+-...+..|+|.|+.. .++|+..+ .|..++.+ ++ .+..+.-.. + ...-++++.. ++.++++.-.++
T Consensus 19 g~~~e~SGLTy~pd~~----tLfaV~d~~~~i~els~~-G~--vlr~i~l~g---~-~D~EgI~y~g-~~~~vl~~Er~~ 86 (248)
T PF06977_consen 19 GILDELSGLTYNPDTG----TLFAVQDEPGEIYELSLD-GK--VLRRIPLDG---F-GDYEGITYLG-NGRYVLSEERDQ 86 (248)
T ss_dssp T--S-EEEEEEETTTT----EEEEEETTTTEEEEEETT-----EEEEEE-SS-----SSEEEEEE-S-TTEEEEEETTTT
T ss_pred CccCCccccEEcCCCC----eEEEEECCCCEEEEEcCC-CC--EEEEEeCCC---C-CCceeEEEEC-CCEEEEEEcCCC
Confidence 4445699999999873 46666654 66666653 44 344333221 1 5678899974 666666555589
Q ss_pred eEEEEECCCCe------eeeeee-----ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCC--C-cceeeEEe-----C
Q 040307 147 TCVIWDIDREI------LETQLV-----AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRD--K-ERSTIIYE-----N 206 (339)
Q Consensus 147 ~v~i~d~~~~~------~~~~~~-----~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~--~-~~~~~~~~-----~ 206 (339)
.+.++++.... ....+. .++..+-.++|+ .++.|+.+-......+|.++. . ........ .
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 99999884321 112221 244568999999 456666666666677777664 1 11111000 1
Q ss_pred CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC---------CCeeEEEeccCCCCeEEEEeCC
Q 040307 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE---------GSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~~~~~d 277 (339)
......+.+++++|.++++++....+.. |..+|.. ++++..+.-.. ..--.|+|.++|. |...++-
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIvsEp 241 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRL-LLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIVSEP 241 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTE-EEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETT
T ss_pred cceeccccceEEcCCCCeEEEEECCCCe-EEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCC--EEEEcCC
Confidence 1123467899999988888888777776 8889844 55555544322 2467899999983 4555566
Q ss_pred CcEEEE
Q 040307 278 SRALIW 283 (339)
Q Consensus 278 g~v~iw 283 (339)
+..++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 655554
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.19 E-value=0.003 Score=53.97 Aligned_cols=238 Identities=15% Similarity=0.129 Sum_probs=118.2
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE-----eecC---------CCCceEEEEcCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL-----IFDH---------PYTPTNIAFFPS 82 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~-----~~~~---------~~~v~~l~~~~~ 82 (339)
...+....|||+ |+.+|... ++.|.+.+.. ++.......- ..+- -+.-..+-||||
T Consensus 42 ~~~~~~~~~sP~---g~~~~~v~-----~~nly~~~~~--~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd 111 (353)
T PF00930_consen 42 PPKLQDAKWSPD---GKYIAFVR-----DNNLYLRDLA--TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD 111 (353)
T ss_dssp ETTBSEEEE-SS---STEEEEEE-----TTEEEEESST--TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT
T ss_pred ccccccceeecC---CCeeEEEe-----cCceEEEECC--CCCeEEeccccceeEEcCccceeccccccccccceEECCC
Confidence 467889999999 99999998 8999995433 2222210000 0000 122367889999
Q ss_pred CCCCCCCeEEEeC-C--cEEEE-----------------------------------eecCCcceeEEEeecCCCccCCC
Q 040307 83 EETLNPDIVATSG-D--SLRLW-----------------------------------EIHDDRTELKSLLNSNKTSEFSS 124 (339)
Q Consensus 83 ~~~~~~~~la~~~-~--~i~iw-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 124 (339)
+ +.||... | .|..+ ++.+++...+...... .....
T Consensus 112 ~-----~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~--~~~~~ 184 (353)
T PF00930_consen 112 S-----KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL--NPQDY 184 (353)
T ss_dssp S-----SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH--HTSSE
T ss_pred C-----CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc--CCCcc
Confidence 9 6766653 2 22222 2222211100000000 01124
Q ss_pred CEEEEEEcCCCCCEEEEEe--CC---CeEEEEECCCCeeeeeeec-cCCce---eEEEec---CCcEEEEEeCCCcEEE-
Q 040307 125 AITSFDWAGFDTRRVATCS--VD---TTCVIWDIDREILETQLVA-HDREV---YDISWG---GFNVFASVSGDCSVRV- 191 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~--~d---~~v~i~d~~~~~~~~~~~~-~~~~v---~~~~~~---~~~~l~~~~~d~~i~i- 191 (339)
.+..+.|.+ +++.|+..- .+ ..+.++|..+++....+.. ....| ....+. ...++.....+|.-+|
T Consensus 185 yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 185 YLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred CcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 677888987 666344332 22 2466778776654333321 12222 244442 3455556667776555
Q ss_pred -EECCCCcceeeEEeCCCCCCCeEE-EEEecCCCCeEEEEeeCC-CeEEEEecCCC-CCceEEEecCCCCeeEEEeccCC
Q 040307 192 -FDLRDKERSTIIYENPVQDCPLLR-LEWNKADPRFMATVGMDS-NKVVVLDIRFP-TNPVVVLSKHEGSVNGISWAPLY 267 (339)
Q Consensus 192 -~d~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~d~-~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~p~~ 267 (339)
++...+. ..... ...-.|.. +.|++..+.+.+++..++ ..-.||-+... +..+..+....+.-..+.|||++
T Consensus 264 ~~~~~~~~--~~~lT--~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 264 LYDLDGGK--PRQLT--SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp EEETTSSE--EEESS---SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred EEcccccc--eeccc--cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 4554444 22122 13456644 677874445555555532 12455555443 44456665544433699999999
Q ss_pred CCeEEEEeC
Q 040307 268 GRRLCSVAD 276 (339)
Q Consensus 268 ~~~l~~~~~ 276 (339)
..++.+++.
T Consensus 340 ~y~v~~~s~ 348 (353)
T PF00930_consen 340 KYYVDTYSG 348 (353)
T ss_dssp SEEEEEEES
T ss_pred CEEEEEEcC
Confidence 655555554
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.16 E-value=0.0027 Score=52.27 Aligned_cols=245 Identities=11% Similarity=0.072 Sum_probs=139.1
Q ss_pred EEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeec----CCCCceEEEEcCCCCCCCCCeE
Q 040307 22 TVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFD----HPYTPTNIAFFPSEETLNPDIV 91 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~~~~~l 91 (339)
.+..+|+ ++.+.++.. .+.....|.+||.. +........+... .......++++.++ +++
T Consensus 40 ~~~~spd---gk~~y~a~T~~sR~~rG~RtDvv~~~D~~--TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dg-----k~~ 109 (342)
T PF06433_consen 40 NVALSPD---GKTIYVAETFYSRGTRGERTDVVEIWDTQ--TLSPTGEIEIPPKPRAQVVPYKNMFALSADG-----KFL 109 (342)
T ss_dssp EEEE-TT---SSEEEEEEEEEEETTEEEEEEEEEEEETT--TTEEEEEEEETTS-B--BS--GGGEEE-TTS-----SEE
T ss_pred ceeECCC---CCEEEEEEEEEeccccccceeEEEEEecC--cCcccceEecCCcchheecccccceEEccCC-----cEE
Confidence 4678999 888876543 45567789996644 3333331122111 11234567888888 666
Q ss_pred EEeC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-CCeeeeee----
Q 040307 92 ATSG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-REILETQL---- 162 (339)
Q Consensus 92 a~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~---- 162 (339)
.... - .|.|-|+...+ .+..+... .+..+ + |..+..|.+-+.||.+.-..+. .|+.....
T Consensus 110 ~V~N~TPa~SVtVVDl~~~k--vv~ei~~P-------GC~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F 178 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAAKK--VVGEIDTP-------GCWLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF 178 (342)
T ss_dssp EEEEESSSEEEEEEETTTTE--EEEEEEGT-------SEEEE-E-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred EEEccCCCCeEEEEECCCCc--eeeeecCC-------CEEEE-E-ecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence 6653 2 89999998887 55555542 22222 2 3234567788889999988886 45443221
Q ss_pred eccCCce-eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-EeCC--C------CCCCeEEEEEecCCCCeEEEEee
Q 040307 163 VAHDREV-YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-YENP--V------QDCPLLRLEWNKADPRFMATVGM 231 (339)
Q Consensus 163 ~~~~~~v-~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~--~------~~~~v~~~~~~p~~~~~l~~~~~ 231 (339)
.....++ ..-++. .+..++-.+.+|.|+-.|+......... .... . ..+.-.-+++++..+++.+.-..
T Consensus 179 ~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 1111222 233344 4556666789999999998877522111 1100 0 01223346777644444433221
Q ss_pred --CC------CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCC
Q 040307 232 --DS------NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPG 289 (339)
Q Consensus 232 --d~------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~ 289 (339)
++ ++|.++|+.+ .+.+.++.. ..++.+|+.+.+..-+|++. ..++.+.+||..+++
T Consensus 259 g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp --TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 11 1588888887 566666664 34688999998874466554 467999999999987
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00036 Score=60.45 Aligned_cols=220 Identities=18% Similarity=0.197 Sum_probs=118.6
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-C
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-G 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-~ 95 (339)
...+..-+|+|+ ++.++.-.+.......+.+++++........ ...+.-..-+|+||+ +.|+-+ .
T Consensus 192 ~~~~~~p~ws~~---~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~~~P~fspDG-----~~l~f~~~ 257 (425)
T COG0823 192 GSLILTPAWSPD---GKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNNGAPAFSPDG-----SKLAFSSS 257 (425)
T ss_pred CcceeccccCcC---CCceEEEEEecCCCceEEEEeccCCccceee------ccCCccCCccCCCCC-----CEEEEEEC
Confidence 357778899999 8888887652222234667555544333332 234444566899999 555544 3
Q ss_pred -C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC--eEEEEECCCCeeeeeeeccCCc
Q 040307 96 -D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--TCVIWDIDREILETQLVAHDRE 168 (339)
Q Consensus 96 -~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~~ 168 (339)
+ .|.++|+....... +.... +.-+.=.|+| +|+.|+..+. .| .|.+.+++.... ..+......
T Consensus 258 rdg~~~iy~~dl~~~~~~~---Lt~~~-----gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~ 327 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLPR---LTNGF-----GINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG 327 (425)
T ss_pred CCCCccEEEEcCCCCccee---cccCC-----ccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC
Confidence 2 88888988876222 32221 2223567898 8888777654 34 466667665543 333322222
Q ss_pred eeEEEec-CCcEEEEEeCC-Cc--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 169 VYDISWG-GFNVFASVSGD-CS--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 169 v~~~~~~-~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
-..-.|+ ++++|+..+.. |. |.+.|+.+...... .. .......-.|.| ++..+...+..+..=.++.+...
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~-lt---~~~~~e~ps~~~-ng~~i~~~s~~~~~~~l~~~s~~ 402 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI-LT---STYLNESPSWAP-NGRMIMFSSGQGGGSVLSLVSLD 402 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE-cc---ccccCCCCCcCC-CCceEEEeccCCCCceEEEeecc
Confidence 2366788 78888877643 43 66666666553221 11 122334556776 55555443333221344444332
Q ss_pred CCceEEEecCCCCeeEEEecc
Q 040307 245 TNPVVVLSKHEGSVNGISWAP 265 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p 265 (339)
++....+....+.+...+|+|
T Consensus 403 g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 403 GRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred ceeEEEEeccCcceecccccC
Confidence 332223333334444445544
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.13 E-value=0.0014 Score=56.20 Aligned_cols=201 Identities=12% Similarity=0.061 Sum_probs=108.6
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-------------------------------------------eeee
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-------------------------------------------LETQ 161 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-------------------------------------------~~~~ 161 (339)
.|+.+.|.+ +...|++|...|.|-||.....+ +...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578888887 77788888888888887542210 1222
Q ss_pred eeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC-----CCCCCCeEEEEEec----CCC---CeEEEE
Q 040307 162 LVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN-----PVQDCPLLRLEWNK----ADP---RFMATV 229 (339)
Q Consensus 162 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~p----~~~---~~l~~~ 229 (339)
+....++|++++.++=.+++.|..+|.+.|.|+|.+.......-. ......++++.|.. .++ -.|++|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 233467899999998779999999999999999988643331111 12345677888863 222 367777
Q ss_pred eeCCCeEEEEecCC--CCCc----eEEEecCCCCeeEEE-eccCCC-------------------CeEEEEeCCCcEEEE
Q 040307 230 GMDSNKVVVLDIRF--PTNP----VVVLSKHEGSVNGIS-WAPLYG-------------------RRLCSVADDSRALIW 283 (339)
Q Consensus 230 ~~d~~~i~i~d~~~--~~~~----~~~~~~~~~~v~~~~-~~p~~~-------------------~~l~~~~~dg~v~iw 283 (339)
+..|. +.+|.+.- .+.. ......+.+.|..+. ++.+.. .-++....+..++++
T Consensus 162 Tn~G~-v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGN-VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp ETTSE-EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred eCCCC-EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 77777 99997752 1111 111123455655554 322210 123334446789999
Q ss_pred EecCCCCCCCCCCCCCcccceeeecccceeEEEEec-----CCCCceEEEecCCeEEEEeC
Q 040307 284 EVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS-----PLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----p~~~~l~~~~~d~~v~~w~v 339 (339)
.....+ .....+........+.+- ..+..|++...+|.+++|.|
T Consensus 241 ~~~~~k------------~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 241 KPPKSK------------GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp -TT---------------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred eCCCCc------------ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 888766 222333222233334442 24445777889999999875
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.11 E-value=0.0013 Score=57.35 Aligned_cols=219 Identities=10% Similarity=0.132 Sum_probs=116.2
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
...+..+.++|+ ++++++++ +|...||. .. .... ...+.-....|.+.+ ++.+--..
T Consensus 32 ~~~p~~ls~npn---gr~v~V~g-----~geY~iyt--~~--~~r~------k~~G~g~~~vw~~~n-----~yAv~~~~ 88 (443)
T PF04053_consen 32 EIYPQSLSHNPN---GRFVLVCG-----DGEYEIYT--AL--AWRN------KAFGSGLSFVWSSRN-----RYAVLESS 88 (443)
T ss_dssp SS--SEEEE-TT---SSEEEEEE-----TTEEEEEE--TT--TTEE------EEEEE-SEEEE-TSS-----EEEEE-TT
T ss_pred CcCCeeEEECCC---CCEEEEEc-----CCEEEEEE--cc--CCcc------cccCceeEEEEecCc-----cEEEEECC
Confidence 346899999999 99999977 89999966 11 1111 112345678899966 54444434
Q ss_pred -cEEEE-eecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 97 -SLRLW-EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 97 -~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
.|.|+ +++.. ....++.. ..+..+- .|.+|+..+.+ .|.+||.++++.++.+... +|..+.|
T Consensus 89 ~~I~I~kn~~~~---~~k~i~~~------~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 89 STIKIYKNFKNE---VVKSIKLP------FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp S-EEEEETTEE----TT-----S------S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred CeEEEEEcCccc---cceEEcCC------cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 88886 44332 21122221 1233332 26777776654 8999999999999988632 4899999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCC-----------cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDK-----------ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~ 242 (339)
+ ++++++..+.+ .+.+++.... .....+.+. ...|.+.+|.- + .++-.+.. . ++-+ .
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~-d--~fiYtT~~-~-lkYl--~ 221 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVE-D--CFIYTTSN-H-LKYL--V 221 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEET-T--EEEEE-TT-E-EEEE--E
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEc-C--EEEEEcCC-e-EEEE--E
Confidence 9 67888888755 6888775544 012222221 35888999973 3 44433333 4 7663 2
Q ss_pred CCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 243 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
. + ....+..-..++.=+.+.|.. ..+.....|+.+..+.+...
T Consensus 222 ~-G-e~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 222 N-G-ETGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp T-T-EEEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--HH
T ss_pred c-C-CcceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEECHH
Confidence 2 1 133333335577777888876 48888888888888877653
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.08 E-value=0.0011 Score=61.18 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=100.6
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCeeeeeeeccCCc-eeEEEec------CCcEEEEEeCCCcEEEEECCCCcceeeEEeC
Q 040307 135 DTRRVATC-SVDTTCVIWDIDREILETQLVAHDRE-VYDISWG------GFNVFASVSGDCSVRVFDLRDKERSTIIYEN 206 (339)
Q Consensus 135 ~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~-v~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 206 (339)
+.++|+.. .....|+-.|++.|+.+..+..+... |..++-. .+...+.|-.+..+..||.|-..........
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 45555554 35688999999999999999877654 6655443 1345566777889999999975421111011
Q ss_pred --CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 207 --PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 207 --~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
-.......|++-. ...+||+|+.+|. |++||- .+......+.+-..+|.+|..+.||. +|++.+ +..+.|++
T Consensus 572 k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~-IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGk-wilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 572 KQYSSKNNFSCFATT--EDGYIAVGSNKGD-IRLYDR-LGKRAKTALPGLGDPIIGIDVTADGK-WILATC-KTYLLLID 645 (794)
T ss_pred cccccCCCceEEEec--CCceEEEEeCCCc-EEeecc-cchhhhhcCCCCCCCeeEEEecCCCc-EEEEee-cceEEEEE
Confidence 1123456666654 5678999999999 999994 33444556667788999999999995 555444 46788888
Q ss_pred ecC
Q 040307 285 VVG 287 (339)
Q Consensus 285 ~~~ 287 (339)
...
T Consensus 646 t~~ 648 (794)
T PF08553_consen 646 TLI 648 (794)
T ss_pred Eee
Confidence 753
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.05 E-value=0.0054 Score=51.54 Aligned_cols=273 Identities=9% Similarity=0.031 Sum_probs=124.6
Q ss_pred EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCC-CCceEEEEcCCCCCCCCCeE-EEeCC-cEE
Q 040307 23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP-YTPTNIAFFPSEETLNPDIV-ATSGD-SLR 99 (339)
Q Consensus 23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~l-a~~~~-~i~ 99 (339)
=+|.++ |+.|+.++. .+|.-.+|.++..+.+..+ ..... .......++|+. +.+ ..-.+ .|+
T Consensus 41 ~~ft~d---G~kllF~s~---~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~-----~~~~Yv~~~~~l~ 105 (386)
T PF14583_consen 41 NCFTDD---GRKLLFASD---FDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDD-----RALYYVKNGRSLR 105 (386)
T ss_dssp --B-TT---S-EEEEEE----TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTS-----SEEEEEETTTEEE
T ss_pred CCcCCC---CCEEEEEec---cCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCC-----CeEEEEECCCeEE
Confidence 357777 876666653 5777777778888888876 22222 223356677887 444 34444 888
Q ss_pred EEeecCCcceeEEEeecCCCccCCCCEEEEEEcC-CCCCEEEEEeC----------------------CCeEEEEECCCC
Q 040307 100 LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAG-FDTRRVATCSV----------------------DTTCVIWDIDRE 156 (339)
Q Consensus 100 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~----------------------d~~v~i~d~~~~ 156 (339)
-.|+++.+.+.+..+.. .-+-...|.. .++..++-.-. ...|.-.|+.++
T Consensus 106 ~vdL~T~e~~~vy~~p~-------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 106 RVDLDTLEERVVYEVPD-------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp EEETTT--EEEEEE--T-------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred EEECCcCcEEEEEECCc-------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 88988887445555443 3333345532 24554433211 224556678877
Q ss_pred eeeeeeeccCCceeEEEec--CCcEEEEEeC---CC-cEEEEECCCCcce-eeEEeCCCCCCCeEEEEEecCCCCeEEE-
Q 040307 157 ILETQLVAHDREVYDISWG--GFNVFASVSG---DC-SVRVFDLRDKERS-TIIYENPVQDCPLLRLEWNKADPRFMAT- 228 (339)
Q Consensus 157 ~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~---d~-~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~- 228 (339)
+....+. -...+..+.|+ +..+|+-|-. +. .-|||-++..... ..+... .....+..=-|.| +|..|.-
T Consensus 179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~-DG~~i~y~ 255 (386)
T PF14583_consen 179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVP-DGSTIWYD 255 (386)
T ss_dssp -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-T-TSS-EEEE
T ss_pred ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccC-CCCEEEEE
Confidence 7554443 55678889999 4667777654 22 1255655433211 111111 1223344456887 6665544
Q ss_pred EeeCCC---eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC----------------cEEEEEecCCC
Q 040307 229 VGMDSN---KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS----------------RALIWEVVGPG 289 (339)
Q Consensus 229 ~~~d~~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------------~v~iwd~~~~~ 289 (339)
+...+. .|.-+|..+... ..+. ...+...+--++++ ++++-=+.|. -|+++++....
T Consensus 256 ~~~~~~~~~~i~~~d~~t~~~--~~~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 256 SYTPGGQDFWIAGYDPDTGER--RRLM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEETTT--EEEEEE-TTT--E--EEEE-EE-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTE
T ss_pred eecCCCCceEEEeeCCCCCCc--eEEE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 332332 266667765322 1221 12245566677888 4655433332 34445554433
Q ss_pred CCCCCCCCCCcccceeeecc---------cce--eEEEEecCCCCceEE-EecCCeEEEE
Q 040307 290 YRSGNGGPSGDVEPELCYQS---------MAE--INVVRWSPLELDWIA-IAFVNKLQLL 337 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~---------~~~--i~~~~~~p~~~~l~~-~~~d~~v~~w 337 (339)
......| ... =-...|+||++.++- +...|...||
T Consensus 332 -------------~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 332 -------------FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -------------EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred -------------eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 1111111 111 146899999998774 4567776665
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.97 E-value=0.0018 Score=43.84 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=68.8
Q ss_pred EEEEEEcCCC---CCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307 126 ITSFDWAGFD---TRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 126 i~~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 202 (339)
|++|++...+ .+.|++|+.|..|++|+- .+.+..+. -.+.|+++.-.....|+.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl---- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL---- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCccee----
Confidence 4556655333 368999999999999984 35667775 3567888888866889999999999999763322
Q ss_pred EEeCCCCCCCeEEEEEecCCC---CeEEEEeeCCCeEE
Q 040307 203 IYENPVQDCPLLRLEWNKADP---RFMATVGMDSNKVV 237 (339)
Q Consensus 203 ~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~d~~~i~ 237 (339)
.... .+..+.++++..-++ ..|++|-.+|. |-
T Consensus 75 -WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGk-ve 109 (111)
T PF14783_consen 75 -WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGK-VE 109 (111)
T ss_pred -eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCe-EE
Confidence 1111 234566766653222 36778877776 53
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0014 Score=56.89 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=92.1
Q ss_pred CCEEEEEEcCCCCCEEEEEe---CC-CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEE-EEeCCCc--EEEEECC
Q 040307 124 SAITSFDWAGFDTRRVATCS---VD-TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFA-SVSGDCS--VRVFDLR 195 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~---~d-~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~--i~i~d~~ 195 (339)
..+..-+|+| ++..++... .. ..+.++|+++++....+. ..+.-...+|+ +++.|+ +...|+. |.++|+.
T Consensus 193 ~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 193 SLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred cceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 4666778887 776655442 22 469999999887555443 33334457888 555544 5556665 6667887
Q ss_pred CCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEE
Q 040307 196 DKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCS 273 (339)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 273 (339)
...... +... .+.-..-.|+| +|+.++..+..++ +|.++|... .....+....+.-..-.|+|+|. +|+.
T Consensus 271 ~~~~~~-Lt~~---~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~~~~~~~p~~SpdG~-~i~~ 342 (425)
T COG0823 271 GKNLPR-LTNG---FGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFSGGGNSNPVWSPDGD-KIVF 342 (425)
T ss_pred CCccee-cccC---CccccCccCCC-CCCEEEEEeCCCCCcceEEECCCC--CceeEeeccCCCCcCccCCCCCC-EEEE
Confidence 776333 2222 22333678998 7787777666554 355555543 33344444444334789999995 6655
Q ss_pred EeC-CCc--EEEEEecCCC
Q 040307 274 VAD-DSR--ALIWEVVGPG 289 (339)
Q Consensus 274 ~~~-dg~--v~iwd~~~~~ 289 (339)
.+. +|. |.+.|+....
T Consensus 343 ~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeccCCceeeEEeccCCCC
Confidence 553 455 4444444443
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=8e-05 Score=65.54 Aligned_cols=113 Identities=8% Similarity=-0.013 Sum_probs=82.3
Q ss_pred CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC
Q 040307 212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR 291 (339)
Q Consensus 212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~ 291 (339)
.+.--+++. ++++++.|+..|. +++|+-..+........+..+.+..+..+++. +++|.|+..|.|.++.+.....
T Consensus 35 ~v~lTc~ds-t~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 35 RVKLTCVDA-TEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred eEEEEEeec-CCceEEEecccce-EEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCC-
Confidence 344445553 8899999999998 99998665332223333344566677888887 6999999999999999988551
Q ss_pred CCCCCCCCcccceee-----ecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 292 SGNGGPSGDVEPELC-----YQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.++.. ..|...|++++|++++..++.|...|.|.+-+
T Consensus 111 ----------~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 111 ----------RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred ----------CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence 11111 13678899999999999999998888887654
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.94 E-value=0.0076 Score=50.69 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=107.9
Q ss_pred EEEEcCCCCCCCCCeEEEeC-C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 76 NIAFFPSEETLNPDIVATSG-D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 76 ~l~~~~~~~~~~~~~la~~~-~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
.=+|.++|+ ++|.++. + .+.+.|+++++..++....+ .......++| +.+.++-......|+-.
T Consensus 40 ~~~ft~dG~----kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-------~~~~g~~~s~-~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 40 QNCFTDDGR----KLLFASDFDGNRNLYLLDLATGEITQLTDGPG-------DNTFGGFLSP-DDRALYYVKNGRSLRRV 107 (386)
T ss_dssp S--B-TTS-----EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------B-TTT-EE-T-TSSEEEEEETTTEEEEE
T ss_pred CCCcCCCCC----EEEEEeccCCCcceEEEEcccCEEEECccCCC-------CCccceEEec-CCCeEEEEECCCeEEEE
Confidence 336888884 4555443 2 88888999886444333222 1122455667 66776665566789999
Q ss_pred ECCCCeeeeeeeccCCceeEEEec---CCcEEEEEeC----------------------CCcEEEEECCCCcceeeEEeC
Q 040307 152 DIDREILETQLVAHDREVYDISWG---GFNVFASVSG----------------------DCSVRVFDLRDKERSTIIYEN 206 (339)
Q Consensus 152 d~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~----------------------d~~i~i~d~~~~~~~~~~~~~ 206 (339)
|+++.+....+......+-...|. ++..++-.-. ...|.-.|+.+++....+..
T Consensus 108 dL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~- 186 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED- 186 (386)
T ss_dssp ETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE-
T ss_pred ECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec-
Confidence 999988666665555555455664 3444332211 23455667777764444333
Q ss_pred CCCCCCeEEEEEecCCCCeEEEEeeCCC-e--EEEEecCCCCCceEEEecCC--CCeeEEEeccCCCCeEEEEe-C---C
Q 040307 207 PVQDCPLLRLEWNKADPRFMATVGMDSN-K--VVVLDIRFPTNPVVVLSKHE--GSVNGISWAPLYGRRLCSVA-D---D 277 (339)
Q Consensus 207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~--i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~-~---d 277 (339)
...+..+.|+|.+..+|+.|.+..- . -+||-++..+.....+..+. ..+..=-|.|+|..+...+- . +
T Consensus 187 ---~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~ 263 (386)
T PF14583_consen 187 ---TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQD 263 (386)
T ss_dssp ---SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--
T ss_pred ---CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCc
Confidence 3678899999988888888765432 1 36777666554444444332 23455578999965544333 2 2
Q ss_pred CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307 278 SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 326 (339)
..|.-+|+.+.+ ..... ....-..+.-+++|..++
T Consensus 264 ~~i~~~d~~t~~-------------~~~~~-~~p~~~H~~ss~Dg~L~v 298 (386)
T PF14583_consen 264 FWIAGYDPDTGE-------------RRRLM-EMPWCSHFMSSPDGKLFV 298 (386)
T ss_dssp EEEEEE-TTT---------------EEEEE-EE-SEEEEEE-TTSSEEE
T ss_pred eEEEeeCCCCCC-------------ceEEE-eCCceeeeEEcCCCCEEE
Confidence 234445555544 22222 122344566678887444
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.89 E-value=0.0092 Score=53.41 Aligned_cols=170 Identities=9% Similarity=0.012 Sum_probs=98.6
Q ss_pred CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307 145 DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (339)
.+.+.+.|.++.+...++.-- .....++++ ++.++++.+.+ .++..-+..... ..+.|+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---------------~~vvfn 277 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---------------WVVVFN 277 (635)
T ss_pred eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc---------------eEEEEc
Confidence 345566676666655554322 233456666 56666666532 122222221111 223332
Q ss_pred c-------CCCCeEEEEeeCCCeEEEEecCC----CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 220 K-------ADPRFMATVGMDSNKVVVLDIRF----PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 220 p-------~~~~~l~~~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
+ .+|++...+ ++. |.+.|.++ ....+..+.. ......+.++|||..+++++..+.+|.|.|+...
T Consensus 278 i~~iea~vkdGK~~~V~--gn~-V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 278 IARIEEAVKAGKFKTIG--GSK-VPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred hHHHHHhhhCCCEEEEC--CCE-EEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 2 256666652 444 99999886 2344444443 5678899999999655666667999999999886
Q ss_pred CCCCCCCCCCCcccce----eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 289 GYRSGNGGPSGDVEPE----LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 289 ~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+.... ..+++. ....-.......+|.++|..+.+---|..|-.|++
T Consensus 354 k~~~~-----~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 354 DDLFD-----GKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred hhhhh-----ccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 61000 001111 11122444567889999875556678999998975
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00011 Score=63.88 Aligned_cols=92 Identities=16% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCee-EEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN-GISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
..+..+.|+| .-.++|.+..+|. +.+..+. .+.+.++..|...++ +++|.||| ++||.|-.||+|++.|+..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~ge-lli~R~n--~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGE-LLIHRLN--WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCc-EEEEEec--cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCC
Confidence 4678899999 8899999999998 8888876 455777777777777 99999999 799999999999999999988
Q ss_pred CCCCCCCCCCcccceee--ecccceeEEEEecC
Q 040307 290 YRSGNGGPSGDVEPELC--YQSMAEINVVRWSP 320 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p 320 (339)
.+.. ..-...|..+-|.|
T Consensus 96 -------------~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 -------------RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred -------------ceeccccccccchheeeccc
Confidence 2221 23345677777764
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.0089 Score=51.99 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=39.8
Q ss_pred eEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCc
Q 040307 147 TCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKE 198 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 198 (339)
.|.||+. .|+.+.++.-..+.+.++.|.+...|+....||.+++||+....
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 5899997 46666666544478999999977777788899999999997544
No 353
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.84 E-value=0.017 Score=50.57 Aligned_cols=247 Identities=14% Similarity=0.128 Sum_probs=127.1
Q ss_pred EEEeeecCCcccEEEEeee-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC----
Q 040307 22 TVAWSVRHDRKSRLAVGSF-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD---- 96 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~---- 96 (339)
..++||+ +++||.+-. .+.....+++ ++..+++.... .+ .. .....+.|.++++ .++.+..+
T Consensus 128 ~~~~Spd---g~~la~~~s~~G~e~~~l~v--~Dl~tg~~l~d-~i--~~-~~~~~~~W~~d~~----~~~y~~~~~~~~ 194 (414)
T PF02897_consen 128 GFSVSPD---GKRLAYSLSDGGSEWYTLRV--FDLETGKFLPD-GI--EN-PKFSSVSWSDDGK----GFFYTRFDEDQR 194 (414)
T ss_dssp EEEETTT---SSEEEEEEEETTSSEEEEEE--EETTTTEEEEE-EE--EE-EESEEEEECTTSS----EEEEEECSTTTS
T ss_pred eeeECCC---CCEEEEEecCCCCceEEEEE--EECCCCcCcCC-cc--cc-cccceEEEeCCCC----EEEEEEeCcccc
Confidence 5688999 999998753 2223345777 55545544431 11 11 1123399999983 44455422
Q ss_pred --------cEEEEeecCCcceeEEEeecCCCccCCCC-EEEEEEcCCCCCEEEEEeC---C-CeEEEEECCCC----eee
Q 040307 97 --------SLRLWEIHDDRTELKSLLNSNKTSEFSSA-ITSFDWAGFDTRRVATCSV---D-TTCVIWDIDRE----ILE 159 (339)
Q Consensus 97 --------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~---d-~~v~i~d~~~~----~~~ 159 (339)
.|+.|.+.+........+..... .. ...+..++ ++++|+.... + ..+.+.++..+ ...
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~----~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDE----PFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTC----TTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCC----CcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 47888888776443444544331 22 56788887 8887765433 2 45788888764 233
Q ss_pred eeeeccCCce-eEEEecCCcEEEEEeC---CCcEEEEECCCCcc--eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 160 TQLVAHDREV-YDISWGGFNVFASVSG---DCSVRVFDLRDKER--STIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 160 ~~~~~~~~~v-~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
..+......+ ..+....+.+++.... .+.|.-.++..... .......+.....+..+... .+.+++....++
T Consensus 270 ~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENG 347 (414)
T ss_dssp EEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETT
T ss_pred EEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECC
Confidence 3333333333 3344444445544432 35677778777763 12122221112245555543 444444444444
Q ss_pred C-eEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeC---CCcEEEEEecCCC
Q 040307 234 N-KVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVAD---DSRALIWEVVGPG 289 (339)
Q Consensus 234 ~-~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~---dg~v~iwd~~~~~ 289 (339)
. .|+++++.. +.....+.. -.+.|..+...++++.+.++.+. -+++.-||+.+++
T Consensus 348 ~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 348 SSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 3 588999872 222333332 23446667666666555554442 2567777777766
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.83 E-value=0.00099 Score=61.41 Aligned_cols=139 Identities=9% Similarity=-0.015 Sum_probs=88.7
Q ss_pred CcEEEEE-eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe----cCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 177 FNVFASV-SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN----KADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 177 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
.++|+.- .....|+-.|+..++........ ...+|..++-. .-+....+.|-.++. +..||.|..+..+..-
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~--~~~~v~~~~p~~K~aqlt~e~tflGls~n~-lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVH--DDIPVVDIAPDSKFAQLTNEQTFLGLSDNS-LFRIDPRLSGNKLVDS 569 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecC--CCcceeEecccccccccCCCceEEEECCCc-eEEeccCCCCCceeec
Confidence 3444433 45678899999998855443332 22335544321 112344555666666 9999999754333221
Q ss_pred ec----CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceE
Q 040307 252 SK----HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 252 ~~----~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~ 326 (339)
.. ......+++-+.+| .||+|+.+|.||+||--. . ... .+.+...+|..|+.+.||++++
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g-~------------~AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLG-K------------RAKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccc-h------------hhhhcCCCCCCCeeEEEecCCCcEEE
Confidence 22 23456777777776 899999999999998432 2 122 3335678999999999999888
Q ss_pred EEecCCe
Q 040307 327 AIAFVNK 333 (339)
Q Consensus 327 ~~~~d~~ 333 (339)
++|..--
T Consensus 635 aTc~tyL 641 (794)
T PF08553_consen 635 ATCKTYL 641 (794)
T ss_pred EeecceE
Confidence 8776443
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00023 Score=61.97 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=76.0
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee-EEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY-DISWG-GFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
..+.-+.|+| .-.+||.+..+|.|.++.++ -+.+.++.-+...++ +++|. +|+.|+.|-.||+|++-|..++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4677899999 88999999999999999998 555777766676777 99999 89999999999999999999987555
Q ss_pred eEEeCCCCCCCeEEEEEec
Q 040307 202 IIYENPVQDCPLLRLEWNK 220 (339)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~p 220 (339)
..... ....|.++.|.|
T Consensus 99 ~~~~s--~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS--VETDISKGIWDR 115 (665)
T ss_pred ccccc--cccchheeeccc
Confidence 42222 346788888864
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.70 E-value=0.00012 Score=39.19 Aligned_cols=38 Identities=26% Similarity=0.550 Sum_probs=33.0
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
++...+..|...|.++.|+|.+ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3456677888899999999998 6999999999999996
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.022 Score=47.25 Aligned_cols=227 Identities=10% Similarity=-0.012 Sum_probs=131.5
Q ss_pred EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEee
Q 040307 24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEI 103 (339)
Q Consensus 24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~ 103 (339)
.|.|+ ...|....- ..+.|.- |+..++.... +.+.+.+.++..-..+ ..|+++...+.+++.
T Consensus 31 ~w~~~---~~~L~w~DI---~~~~i~r--~~~~~g~~~~-----~~~p~~~~~~~~~d~~-----g~Lv~~~~g~~~~~~ 92 (307)
T COG3386 31 VWDPD---RGALLWVDI---LGGRIHR--LDPETGKKRV-----FPSPGGFSSGALIDAG-----GRLIACEHGVRLLDP 92 (307)
T ss_pred cCcCC---CCEEEEEeC---CCCeEEE--ecCCcCceEE-----EECCCCcccceeecCC-----CeEEEEccccEEEec
Confidence 57777 665555542 4666666 5555444443 5566666777666666 677887777888887
Q ss_pred cCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-----------CCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 104 HDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-----------DTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 104 ~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
+.+.. ......... ......+.+...| ++.+-+.... -|.|+.+|. .+..++.+..+-..-+.
T Consensus 93 ~~~~~~t~~~~~~~~---~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NG 167 (307)
T COG3386 93 DTGGKITLLAEPEDG---LPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNG 167 (307)
T ss_pred cCCceeEEeccccCC---CCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCc
Confidence 66552 222222211 1114556777887 6665554333 133444444 45555555554555678
Q ss_pred EEec-CCcEEEEEe-CCCcEEEEECCC--Cc--ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 172 ISWG-GFNVFASVS-GDCSVRVFDLRD--KE--RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 172 ~~~~-~~~~l~~~~-~d~~i~i~d~~~--~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
|+|+ +++.|..+. ..+.|.-|++.. .. ............+..-.++... +|.+-+++...+..|..|+.. +
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd--G 244 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD--G 244 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC--C
Confidence 9999 665665554 447788887752 11 0111122212345556677774 777776555554239999886 5
Q ss_pred CceEEEecCCCCeeEEEecc-CCCCeEEEEeC
Q 040307 246 NPVVVLSKHEGSVNGISWAP-LYGRRLCSVAD 276 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~ 276 (339)
+.+..+......+++++|-- +.+.+++|+..
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred cEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 67777777667788888864 44344445443
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.68 E-value=0.0067 Score=41.16 Aligned_cols=102 Identities=9% Similarity=0.011 Sum_probs=68.2
Q ss_pred eEEEEEecC---CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 213 LLRLEWNKA---DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 213 v~~~~~~p~---~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
|+++++... ..+.|++|+.|.. |++|+- ...+.++.. ...|..+.-...+ .++.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~---~e~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKG---DEIVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeC---CcEEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCcce-
Confidence 556666542 3368999999998 999974 345666665 5567777766664 7999999999999976432
Q ss_pred CCCCCCCCCCcccceeeecccceeEEEEecCCC----CceEEEecCCeEEE
Q 040307 290 YRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE----LDWIAIAFVNKLQL 336 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~----~~l~~~~~d~~v~~ 336 (339)
+-.......++++++..-. +.|+++-.+|.|-+
T Consensus 74 --------------lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 --------------LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --------------eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222233346666555432 24888888888753
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.68 E-value=0.016 Score=45.43 Aligned_cols=107 Identities=12% Similarity=-0.042 Sum_probs=67.0
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE 109 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~ 109 (339)
..++.+|+ ..+.+.- ++...+.+.- +.-...+|.+-+.- -+ ++++.|. . .+++.++++++
T Consensus 23 kT~v~igS----Hs~~~~a--vd~~sG~~~W----e~ilg~RiE~sa~v-vg-----dfVV~GCy~g~lYfl~~~tGs-- 84 (354)
T KOG4649|consen 23 KTLVVIGS----HSGIVIA--VDPQSGNLIW----EAILGVRIECSAIV-VG-----DFVVLGCYSGGLYFLCVKTGS-- 84 (354)
T ss_pred ceEEEEec----CCceEEE--ecCCCCcEEe----ehhhCceeeeeeEE-EC-----CEEEEEEccCcEEEEEecchh--
Confidence 56788888 5788888 5555555443 22234445444444 33 4566655 3 89999999986
Q ss_pred eEEEeecCCCccCCCCEEEE-EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307 110 LKSLLNSNKTSEFSSAITSF-DWAGFDTRRVATCSVDTTCVIWDIDREILETQLV 163 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 163 (339)
....+..- ..|.+- ...+ ++.+|..|+.|++.+..|.++..++.+.+
T Consensus 85 ~~w~f~~~------~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 85 QIWNFVIL------ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred heeeeeeh------hhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence 33333321 122211 2233 78999999999999999998877766654
No 360
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.58 E-value=0.032 Score=46.18 Aligned_cols=261 Identities=13% Similarity=0.142 Sum_probs=139.0
Q ss_pred CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC------------CcEEEEeecCCcceeEEE
Q 040307 46 NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG------------DSLRLWEIHDDRTELKSL 113 (339)
Q Consensus 46 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~------------~~i~iw~~~~~~~~~~~~ 113 (339)
+++.+ ++.+.+++.- .+..+. .-.+..+|++ +.+.+++ |.|.+||..+-.......
T Consensus 17 ~rv~v--iD~d~~k~lG--mi~~g~---~~~~~~spdg-----k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~ 84 (342)
T PF06433_consen 17 SRVYV--IDADSGKLLG--MIDTGF---LGNVALSPDG-----KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE 84 (342)
T ss_dssp EEEEE--EETTTTEEEE--EEEEES---SEEEEE-TTS-----SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred ceEEE--EECCCCcEEE--Eeeccc---CCceeECCCC-----CEEEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence 46777 5555555543 222222 3346789999 5555431 279999999876333333
Q ss_pred eecC-CCccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcE
Q 040307 114 LNSN-KTSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSV 189 (339)
Q Consensus 114 ~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i 189 (339)
+... .... ......++++. ++++++.... -..|.|.|+...+.+..+.. .+ + .+.|- .+.-|.+-+.||.+
T Consensus 85 iP~k~R~~~-~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C-~~iyP~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 85 IPPKPRAQV-VPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-C-WLIYPSGNRGFSMLCGDGSL 159 (342)
T ss_dssp ETTS-B--B-S--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-E-EEEEEEETTEEEEEETTSCE
T ss_pred cCCcchhee-cccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-E-EEEEecCCCceEEEecCCce
Confidence 4331 1000 01222346665 7777766543 45788888888887777642 22 1 12232 34568888999999
Q ss_pred EEEECCCCcceeeEE-e--CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-ceEEEecC----------C
Q 040307 190 RVFDLRDKERSTIIY-E--NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-PVVVLSKH----------E 255 (339)
Q Consensus 190 ~i~d~~~~~~~~~~~-~--~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-~~~~~~~~----------~ 255 (339)
.-..+....+..... . .+..+..+..-++.. .+..++.-+.+|. |+-.|+..... .......- .
T Consensus 160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~-v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGN-VYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp EEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSE-EEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred EEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCE-EEEEeccCCcccccCcccccCccccccCcCC
Confidence 999888543322211 1 111111222334443 4445555688888 88888876321 11111110 1
Q ss_pred CCeeEEEeccCCCCeEEEEe--------CCC--cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC-c
Q 040307 256 GSVNGISWAPLYGRRLCSVA--------DDS--RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL-D 324 (339)
Q Consensus 256 ~~v~~~~~~p~~~~~l~~~~--------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~ 324 (339)
+.-.-+++++... .|.+.- .|+ .|.++|+.+.+ .+....-..++.+|..+.+.. .
T Consensus 238 GG~Q~~A~~~~~~-rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-------------rv~Ri~l~~~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 238 GGWQLIAYHAASG-RLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-------------RVARIPLEHPIDSIAVSQDDKPL 303 (342)
T ss_dssp -SSS-EEEETTTT-EEEEEEEE--TT-TTS-EEEEEEEETTTTE-------------EEEEEEEEEEESEEEEESSSS-E
T ss_pred cceeeeeeccccC-eEEEEecCCCCCCccCCceEEEEEECCCCe-------------EEEEEeCCCccceEEEccCCCcE
Confidence 2334577776553 333322 223 35555555555 444444455788999998765 5
Q ss_pred eEEEe-cCCeEEEEeC
Q 040307 325 WIAIA-FVNKLQLLKV 339 (339)
Q Consensus 325 l~~~~-~d~~v~~w~v 339 (339)
|++.+ .++.|.+|+.
T Consensus 304 L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDA 319 (342)
T ss_dssp EEEEETTTTEEEEEET
T ss_pred EEEEcCCCCeEEEEeC
Confidence 66665 5789999873
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.00012 Score=55.86 Aligned_cols=140 Identities=13% Similarity=-0.056 Sum_probs=83.7
Q ss_pred EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCe
Q 040307 179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSV 258 (339)
Q Consensus 179 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v 258 (339)
.+...+.|+.|+-++++..+....... .+....--+..+.-+++|+.++. |++|.....+.....+..-...|
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~------~~~e~~~v~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSER------FIDEGQRVVTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhh------hhhcceeecccCceEEeecccce-EEEecCCccchHHHhhhcccccc
Confidence 445556788888888887653222111 11111111235677889999998 99998774333222222222233
Q ss_pred eEE-EeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeeccc-ceeEEEEecCCCCceEEE--ecCCe
Q 040307 259 NGI-SWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSM-AEINVVRWSPLELDWIAI--AFVNK 333 (339)
Q Consensus 259 ~~~-~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~i~~~~~~p~~~~l~~~--~~d~~ 333 (339)
-++ .--.++ .+..+++.||.|+.|++...+ .. ....|. .++..+..+-.++.+..+ +.|..
T Consensus 105 ~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k-------------~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 105 DLGIPNGRDS-SLGCVGAQDGRIRACNIKPNK-------------VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV 170 (238)
T ss_pred eecccccccc-ceeEEeccCCceeeeccccCc-------------eeeeeccccCCCcceeEEecCCceEEeeccccchh
Confidence 222 222233 488899999999999999887 23 233444 556666666666666655 77888
Q ss_pred EEEEeC
Q 040307 334 LQLLKV 339 (339)
Q Consensus 334 v~~w~v 339 (339)
++.|+|
T Consensus 171 ~k~W~v 176 (238)
T KOG2444|consen 171 LKKWNV 176 (238)
T ss_pred hhhcch
Confidence 888875
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.52 E-value=0.00044 Score=36.83 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=31.4
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWD 152 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d 152 (339)
+...+..|. ..|.++.|++ ++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~-----~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT-----GPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecC-----CceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 455566666 7899999997 779999999999999996
No 363
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.52 E-value=0.031 Score=44.62 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=110.2
Q ss_pred ecCC--CCceEEEEcCCCCCCCCCeEEEeC--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307 68 FDHP--YTPTNIAFFPSEETLNPDIVATSG--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT 141 (339)
Q Consensus 68 ~~~~--~~v~~l~~~~~~~~~~~~~la~~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 141 (339)
++|. .-...+.|.+++ .++-+.| + .|+.+|+.+++......+...- ---.++.. ++++..-
T Consensus 39 ypHd~~aFTQGL~~~~~g-----~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~------FgEGit~~--~d~l~qL 105 (264)
T PF05096_consen 39 YPHDPTAFTQGLEFLDDG-----TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY------FGEGITIL--GDKLYQL 105 (264)
T ss_dssp EE--TT-EEEEEEEEETT-----EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--------EEEEEEE--TTEEEEE
T ss_pred CCCCCcccCccEEecCCC-----EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc------cceeEEEE--CCEEEEE
Confidence 3444 345788887787 6777776 3 9999999999744444443311 12244443 4566667
Q ss_pred EeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC--CCCCCeEEEEEe
Q 040307 142 CSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP--VQDCPLLRLEWN 219 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~ 219 (339)
.-.++...+||.++.+.+.++. ....=+.++.. ++.|+.......|+++|..+.+....+.... ..-..++-+.|.
T Consensus 106 TWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp ESSSSEEEEEETTTTEEEEEEE--SSS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EecCCeEEEEccccceEEEEEe-cCCcceEEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 7788999999999998888875 34556777754 5666666667789999988766443332210 111234556665
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe---------------cCCCCeeEEEeccCCCCeEEEEe
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS---------------KHEGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~~l~~~~ 275 (339)
+|.+.|-.-.... |...|..+ +.....+. ....-.+.||+.|..+.+++||-
T Consensus 184 --~G~IyANVW~td~-I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 --NGKIYANVWQTDR-IVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp --TTEEEEEETTSSE-EEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred --cCEEEEEeCCCCe-EEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5555555444444 66666665 33332221 01345789999999866677763
No 364
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.49 E-value=0.018 Score=45.23 Aligned_cols=123 Identities=11% Similarity=-0.067 Sum_probs=84.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL 214 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 214 (339)
...+++.|+..+.+.--|..+|+...... ....+.+-+.--+++++.|+..|.+++.+..+++..-.+... ..|.
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----~~vk 96 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----ETVK 96 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh----hhhc
Confidence 45688889999999999999998665432 333444433333778999999999999999999755444333 1222
Q ss_pred -EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc
Q 040307 215 -RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP 265 (339)
Q Consensus 215 -~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p 265 (339)
+....+ ++.++..|+.|++ .+..|.++ ...+.+.+...+...+-+..|
T Consensus 97 ~~a~~d~-~~glIycgshd~~-~yalD~~~-~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 97 VRAQCDF-DGGLIYCGSHDGN-FYALDPKT-YGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred cceEEcC-CCceEEEecCCCc-EEEecccc-cceEEecccCCceeccceecC
Confidence 233444 8899999999999 99999987 555666554444333444555
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.46 E-value=0.066 Score=46.95 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=89.0
Q ss_pred CEEEEEEcCCCCCEEEEE-eCCC----eEEEEECCCCeeeeee-eccCCceeEEEec-CCcEEEEEeCCC----------
Q 040307 125 AITSFDWAGFDTRRVATC-SVDT----TCVIWDIDREILETQL-VAHDREVYDISWG-GFNVFASVSGDC---------- 187 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~-~~d~----~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~-~~~~l~~~~~d~---------- 187 (339)
.+..+.++| +++++|.+ +..| .|+++|+++++.+... ... ....+.|. +++.|+....+.
T Consensus 125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 344678898 88888865 3333 5999999999765432 221 12239999 666666554333
Q ss_pred -cEEEEECCCCcce-eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC---eEEEEecCCC---CCceEEEecCCCCee
Q 040307 188 -SVRVFDLRDKERS-TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN---KVVVLDIRFP---TNPVVVLSKHEGSVN 259 (339)
Q Consensus 188 -~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~---~i~i~d~~~~---~~~~~~~~~~~~~v~ 259 (339)
.|+.|.+.+.... ..+++.+........+..++ ++++|+.....+. .+.+.|+... ......+......+.
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 3788888877644 45555533332367888887 8888776555443 3788888763 233444444444443
Q ss_pred -EEEeccCCCCeEEEEeC---CCcEEEEEecCCC
Q 040307 260 -GISWAPLYGRRLCSVAD---DSRALIWEVVGPG 289 (339)
Q Consensus 260 -~~~~~p~~~~~l~~~~~---dg~v~iwd~~~~~ 289 (339)
.+... .+ .+++.... .+.|.-.++....
T Consensus 281 ~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 281 YYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEEcc-CC-EEEEeeCCCCCCcEEEEecccccc
Confidence 34333 43 34444432 2345444555443
No 366
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.43 E-value=0.041 Score=50.06 Aligned_cols=233 Identities=14% Similarity=0.153 Sum_probs=125.0
Q ss_pred ccEEEEeeecc--ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-------cEEEE
Q 040307 32 KSRLAVGSFLE--DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-------SLRLW 101 (339)
Q Consensus 32 ~~~la~g~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-------~i~iw 101 (339)
+.++++|+... ..-..+..|| .......... .......-.+++...+ .+.++|| + .+..|
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd--~~~~~w~~~a--~m~~~r~~~~~~~~~~------~lYv~GG~~~~~~~l~~ve~Y 354 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYD--PKTNEWSSLA--PMPSPRCRVGVAVLNG------KLYVVGGYDSGSDRLSSVERY 354 (571)
T ss_pred CeEEEECCCCCCCcccceeEEec--CCcCcEeecC--CCCcccccccEEEECC------EEEEEccccCCCcccceEEEe
Confidence 67788888411 1224667744 4444333311 2234444556666554 5777775 2 67888
Q ss_pred eecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe-----EEEEECCCCeeeeeeeccCCceeE--EEe
Q 040307 102 EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT-----CVIWDIDREILETQLVAHDREVYD--ISW 174 (339)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-----v~i~d~~~~~~~~~~~~~~~~v~~--~~~ 174 (339)
|...+++.....+.... ... +++. .++.+.+.|+.||. |-.||..+.+-- ........... ++-
T Consensus 355 D~~~~~W~~~a~M~~~R-----~~~-~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~~r~~~gv~~ 425 (571)
T KOG4441|consen 355 DPRTNQWTPVAPMNTKR-----SDF-GVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLTRRSGHGVAV 425 (571)
T ss_pred cCCCCceeccCCccCcc-----ccc-eeEE--ECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCcceeeeEEEE
Confidence 88888765555444332 111 2333 27899999999874 677887766411 11111112222 222
Q ss_pred cCCcEEEEEeCCC------cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCC
Q 040307 175 GGFNVFASVSGDC------SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFP 244 (339)
Q Consensus 175 ~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~ 244 (339)
.++.+.++||.++ ++..||..+..-... ......... ..++.- ++.+.+.|+.++. .+..||....
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~-~~M~~~R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI-APMNTRRSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeec-CCccccccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCCCC
Confidence 2688889888664 467888887762221 111111111 224432 7788888888762 3777887763
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC-----cEEEEEecCCC
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS-----RALIWEVVGPG 289 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~v~iwd~~~~~ 289 (339)
. ...+..-......+.....+.++.++|+.|| +|..||..+.+
T Consensus 502 ~--W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 502 Q--WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred c--eeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 2 2222212222223323333336888888776 46666555544
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0044 Score=53.38 Aligned_cols=143 Identities=8% Similarity=0.057 Sum_probs=96.7
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC--------CcEEEEEeCCCcEEEEECCCCcceee-EEeCC-
Q 040307 138 RVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG--------FNVFASVSGDCSVRVFDLRDKERSTI-IYENP- 207 (339)
Q Consensus 138 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~- 207 (339)
++.++.....++-.|++.|+.+.....+.. |+-+.+.| ...-+.|=.+..|.-||.|-...... ..+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445566667888899999999988876665 66666652 12224455688899999996553211 11110
Q ss_pred -CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 208 -VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 208 -~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
.......|.+- ....++++|+.+|. |++||- .+......+.+-..+|..|..+.+|. +|+..+ +..+.+-++.
T Consensus 427 y~~k~nFsc~aT--T~sG~IvvgS~~Gd-IRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK-wil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFAT--TESGYIVVGSLKGD-IRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK-WILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccceeee--cCCceEEEeecCCc-EEeehh-hhhhhhhcccccCCceeeEEeeccCc-EEEEec-ccEEEEEEEe
Confidence 11233444443 35678999999999 999997 33555566788888999999999994 655444 5677777766
Q ss_pred C
Q 040307 287 G 287 (339)
Q Consensus 287 ~ 287 (339)
-
T Consensus 501 ~ 501 (644)
T KOG2395|consen 501 I 501 (644)
T ss_pred c
Confidence 5
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.044 Score=43.80 Aligned_cols=211 Identities=12% Similarity=0.098 Sum_probs=120.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
.........++|+|... .-++.+-. ...++|.+..+ ...++...+.. .-.-.-.||| ++.+|...-.
T Consensus 64 ~~lpaR~Hgi~~~p~~~----ravafARrPGtf~~vfD~~~~~--~pv~~~s~~~R---HfyGHGvfs~-dG~~LYATEn 133 (366)
T COG3490 64 TALPARGHGIAFHPALP----RAVAFARRPGTFAMVFDPNGAQ--EPVTLVSQEGR---HFYGHGVFSP-DGRLLYATEN 133 (366)
T ss_pred eecccccCCeecCCCCc----ceEEEEecCCceEEEECCCCCc--CcEEEecccCc---eeecccccCC-CCcEEEeecC
Confidence 34455667889999874 56666653 77889988876 33333222111 0111235887 9988887644
Q ss_pred -----CCeEEEEECCCC-eeeeeeeccCCceeEEEec-CCcEEEEEeC------------------CCcEEEEECCCCcc
Q 040307 145 -----DTTCVIWDIDRE-ILETQLVAHDREVYDISWG-GFNVFASVSG------------------DCSVRVFDLRDKER 199 (339)
Q Consensus 145 -----d~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------------------d~~i~i~d~~~~~~ 199 (339)
-|.|=|||.+.+ ..+..+..|.-....+.|. |+..++.+.. .-++.+.|..++..
T Consensus 134 dfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 134 DFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred CCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence 367889998744 2455677777777888998 8888877643 11233334333332
Q ss_pred eeeE-EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCe---EEEEecCCCCCceEEEec-------CCCCeeEEEeccCCC
Q 040307 200 STII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNK---VVVLDIRFPTNPVVVLSK-------HEGSVNGISWAPLYG 268 (339)
Q Consensus 200 ~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~---i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~ 268 (339)
..+. .....+...+..++..+ ++..++.+-..|-. --+.-....++++.-+.. ....|-+|+.+.+.+
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g 292 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG 292 (366)
T ss_pred hhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence 2111 11112345677777775 66666555444320 001111112333333322 123577888887764
Q ss_pred CeEEEEeCCCcEEEEEecCCC
Q 040307 269 RRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 269 ~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+.+|.-..+...+||..++.
T Consensus 293 lV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCc
Confidence 344444466678899999987
No 369
>PHA02713 hypothetical protein; Provisional
Probab=97.40 E-value=0.025 Score=51.42 Aligned_cols=185 Identities=8% Similarity=-0.005 Sum_probs=97.6
Q ss_pred CeEEEeC-C-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCC
Q 040307 89 DIVATSG-D-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-----TCVIWDIDR 155 (339)
Q Consensus 89 ~~la~~~-~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~ 155 (339)
.+++.|| + .+..||..++.+.....+.... ... +++.. ++.+.+.||.++ .+..||..+
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R-----~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR-----CRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh-----hce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCC
Confidence 6777766 1 4778888777654433332211 112 23332 678888888764 478899877
Q ss_pred Cee--eeeeeccCCceeEEEecCCcEEEEEeCCC-----------------------cEEEEECCCCcceeeEEeCCCCC
Q 040307 156 EIL--ETQLVAHDREVYDISWGGFNVFASVSGDC-----------------------SVRVFDLRDKERSTIIYENPVQD 210 (339)
Q Consensus 156 ~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----------------------~i~i~d~~~~~~~~~~~~~~~~~ 210 (339)
.+- +..+...... .+++..++.+.+.|+.++ .+..||..+.+-... ...+...
T Consensus 377 ~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r 454 (557)
T PHA02713 377 DKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGT 454 (557)
T ss_pred CeEEECCCCCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCCccc
Confidence 641 1122111111 122223688888887653 477788877652211 1111111
Q ss_pred CCeEEEEEecCCCCeEEEEeeCC-----CeEEEEecCC-C-CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC--cEE
Q 040307 211 CPLLRLEWNKADPRFMATVGMDS-----NKVVVLDIRF-P-TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS--RAL 281 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~-----~~i~i~d~~~-~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~ 281 (339)
.. .+++.. ++++.+.|+.++ ..+..||..+ . ...+..+.........+.+ ++ ++.++|+.++ .+.
T Consensus 455 ~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 455 IR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQD 528 (557)
T ss_pred cc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehh
Confidence 11 122322 667777777542 1267898875 2 2223333322222222222 44 6888999888 677
Q ss_pred EEEecCCC
Q 040307 282 IWEVVGPG 289 (339)
Q Consensus 282 iwd~~~~~ 289 (339)
.||..+.+
T Consensus 529 ~yd~~~~~ 536 (557)
T PHA02713 529 TFNVYTYE 536 (557)
T ss_pred hcCccccc
Confidence 77777765
No 370
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.39 E-value=0.00057 Score=38.62 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=32.2
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFN 54 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~ 54 (339)
.+.......+|.+++|+|. .++||.|+ .+|.|.||+++
T Consensus 4 ~~~~k~l~~~v~~~~w~P~---mdLiA~~t----~~g~v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCPT---MDLIALGT----EDGEVLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECCC---CCEEEEEE----CCCeEEEEECC
Confidence 3445556778999999999 99999999 79999998874
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.34 E-value=0.074 Score=48.51 Aligned_cols=194 Identities=9% Similarity=0.008 Sum_probs=98.0
Q ss_pred CeeEEEeeecCCcccEEEEeee--ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 19 PISTVAWSVRHDRKSRLAVGSF--LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~--~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
.+.+.+++|+ ++.+|+... ..+.+..-.||-.+..+.. .. +..+ .....-.|+|++ ..|++..+
T Consensus 351 ~vsspaiSpd---G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~---lt~g--~~~t~PsWspDG-----~~lw~v~d 416 (591)
T PRK13616 351 NITSAALSRS---GRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ---VLEG--HSLTRPSWSLDA-----DAVWVVVD 416 (591)
T ss_pred CcccceECCC---CCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee---eecC--CCCCCceECCCC-----CceEEEec
Confidence 5678899999 888877652 1111344455545543322 22 1122 247888999998 56655542
Q ss_pred ---cEEEEeecCCcceeEE--EeecCCCc-cCCCCEEEEEEcCCCCCEEEEEeCCCeEEE---EECCCCe-ee---eeee
Q 040307 97 ---SLRLWEIHDDRTELKS--LLNSNKTS-EFSSAITSFDWAGFDTRRVATCSVDTTCVI---WDIDREI-LE---TQLV 163 (339)
Q Consensus 97 ---~i~iw~~~~~~~~~~~--~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i---~d~~~~~-~~---~~~~ 163 (339)
.+++.+..... .+. .+.+.... .....|..+.|+| |+..++... ++.|++ -....++ .+ ..+.
T Consensus 417 g~~~~~v~~~~~~g--ql~~~~vd~ge~~~~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 417 GNTVVRVIRDPATG--QLARTPVDASAVASRVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred CcceEEEeccCCCc--eEEEEeccCchhhhccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee
Confidence 23333322111 111 11110000 1125799999998 999888766 578877 4434443 11 1122
Q ss_pred -ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 164 -AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 164 -~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
.-...+.++.|.++..|+.+..++...+|.+.-...............++..++=++ ..++....++
T Consensus 493 ~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~---~~iyv~~~~g 560 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP---STVYVTDARA 560 (591)
T ss_pred cccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC---ceEEEEcCCc
Confidence 233346889999433355655555444554432221111111111235666676654 2344444444
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.34 E-value=0.064 Score=44.05 Aligned_cols=226 Identities=14% Similarity=0.185 Sum_probs=124.2
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCccee
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTEL 110 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~ 110 (339)
++.|++|+ .+| +.+++.+.. ..... ..+...|..+...|+- ++|++-+| .+++++++.-....
T Consensus 7 ~~~L~vGt----~~G-l~~~~~~~~-~~~~~-----i~~~~~I~ql~vl~~~-----~~llvLsd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 7 GDRLLVGT----EDG-LYVYDLSDP-SKPTR-----ILKLSSITQLSVLPEL-----NLLLVLSDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CCEEEEEE----CCC-EEEEEecCC-cccee-----EeecceEEEEEEeccc-----CEEEEEcCCccEEEEchhhcccc
Confidence 77899999 566 888777221 12221 2233349999999988 66666666 99999987654211
Q ss_pred EEE-ee-------cCCCccCCCCEEEEE-EcCCCCCEEEEEeCCCeEEEEECCCC-----eeeeeeeccCCceeEEEecC
Q 040307 111 KSL-LN-------SNKTSEFSSAITSFD-WAGFDTRRVATCSVDTTCVIWDIDRE-----ILETQLVAHDREVYDISWGG 176 (339)
Q Consensus 111 ~~~-~~-------~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~ 176 (339)
... .. .+. ......+...+ -....+...++.....+|.+|..... +..+.+. -...+.+++|.
T Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~- 147 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTK-LPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL- 147 (275)
T ss_pred cccccccccccccccc-ccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe-
Confidence 100 00 000 00013344444 11224444444555669998887553 3445553 45788999998
Q ss_pred CcEEEEEeCCCcEEEEECCCCcceeeEEeCCC---------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307 177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPV---------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247 (339)
Q Consensus 177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~ 247 (339)
++.++.|..+ ...+.|+.++........... ...++..+... ++.+|++. +.. -.+.|.. +++
T Consensus 148 ~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~-g~fv~~~--G~~ 219 (275)
T PF00780_consen 148 GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNI-GVFVNKN--GEP 219 (275)
T ss_pred CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cce-EEEEcCC--CCc
Confidence 6666666644 588899997664333211100 11233333443 45666543 332 3334443 322
Q ss_pred e--EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 248 V--VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 248 ~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
. ..+.- .....++++.. + +|+.... +.|.||++.+++
T Consensus 220 ~r~~~i~W-~~~p~~~~~~~--p-yli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 220 SRKSTIQW-SSAPQSVAYSS--P-YLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred CcccEEEc-CCchhEEEEEC--C-EEEEECC-CEEEEEECcCCc
Confidence 2 23333 33556666643 3 5555554 559999999987
No 373
>PHA02713 hypothetical protein; Provisional
Probab=97.24 E-value=0.029 Score=51.04 Aligned_cols=141 Identities=10% Similarity=0.053 Sum_probs=79.2
Q ss_pred CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC---------------
Q 040307 89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT--------------- 146 (339)
Q Consensus 89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--------------- 146 (339)
++.+.||. .+..||..++++.....+.... .....+.. ++.+.+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-----SSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-----ccccEEEE---CCEEEEEeCCCcccccccccccccccc
Confidence 67777762 5888999888765544443322 11112222 678888887653
Q ss_pred --------eEEEEECCCCee--eeeeeccCCceeEEEecCCcEEEEEeCC------CcEEEEECCC-CcceeeEEeCCCC
Q 040307 147 --------TCVIWDIDREIL--ETQLVAHDREVYDISWGGFNVFASVSGD------CSVRVFDLRD-KERSTIIYENPVQ 209 (339)
Q Consensus 147 --------~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~ 209 (339)
.+..||.++.+- +..+..... -.+++..++.+.+.|+.+ ..+..||..+ .+- ......+..
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W-~~~~~m~~~ 502 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW-ELITTTESR 502 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCe-eEccccCcc
Confidence 477888877641 222211111 122333367788888764 2467899887 442 222222112
Q ss_pred CCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCC
Q 040307 210 DCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRF 243 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~ 243 (339)
... ..++.. ++.+.++|+.++ . +..||..+
T Consensus 503 r~~-~~~~~~--~~~iyv~Gg~~~~~~-~e~yd~~~ 534 (557)
T PHA02713 503 LSA-LHTILH--DNTIMMLHCYESYML-QDTFNVYT 534 (557)
T ss_pred ccc-ceeEEE--CCEEEEEeeecceee-hhhcCccc
Confidence 222 233332 788999999888 5 77788765
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.084 Score=42.48 Aligned_cols=162 Identities=12% Similarity=0.171 Sum_probs=100.9
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
..+.++.|+| +.+.|++......-.|+=..+|+.++++.-. -.....+.|. ++.+.++--.++.+.++.+.......
T Consensus 86 ~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 5699999999 6676666666666666666678877776421 2234568888 66666666778888888776653211
Q ss_pred e-------EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE--EEecC-------CCCeeEEEecc
Q 040307 202 I-------IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV--VLSKH-------EGSVNGISWAP 265 (339)
Q Consensus 202 ~-------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~--~~~~~-------~~~v~~~~~~p 265 (339)
. +..........-.++|.|.+..++++--.+- +.||.+......+. ....+ -..|.++.|++
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 1 1111222556788999996666665544444 56665543221111 11111 13577889998
Q ss_pred CCCCeEEEEeCCCcEEEEEecCC
Q 040307 266 LYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 266 ~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
..+.+|+-+.+++.+.-.|....
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCcEEEEecCCceEEEEecCCC
Confidence 76667777777777777766654
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.17 E-value=0.19 Score=46.02 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=100.3
Q ss_pred CCEEEEEEcCCCCCEEEEEe------CCC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC--------
Q 040307 124 SAITSFDWAGFDTRRVATCS------VDT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD-------- 186 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~------~d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-------- 186 (339)
..+...+.+| +++.++... .|. .|.+++.. +.. ..+.. ....+.-.|+ ++..+++....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 4567889998 888877765 243 45555642 222 33322 2237788899 56777666532
Q ss_pred ----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE---EecCCCCC-ce---EEEe-cC
Q 040307 187 ----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV---LDIRFPTN-PV---VVLS-KH 254 (339)
Q Consensus 187 ----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i---~d~~~~~~-~~---~~~~-~~ 254 (339)
+.+.+.++..+.... .....|..+.|+| +|..++... ++. |++ -.... +. .+ ..+. .-
T Consensus 426 ~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~-v~Va~Vvr~~~-G~~~l~~~~~l~~~l 495 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGK-VYLAVVEQTED-GQYALTNPREVGPGL 495 (591)
T ss_pred cCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCE-EEEEEEEeCCC-CceeecccEEeeccc
Confidence 222222333222111 1245799999999 888777655 344 777 33222 22 11 1122 22
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCe
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNK 333 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~ 333 (339)
...+.++.|.+++. + +++..++...+|.+.-... .... .......++..|+=+++ .++.+..++.
T Consensus 496 ~~~~~~l~W~~~~~-L-~V~~~~~~~~v~~v~vDG~----------~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 496 GDTAVSLDWRTGDS-L-VVGRSDPEHPVWYVNLDGS----------NSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred CCccccceEecCCE-E-EEEecCCCCceEEEecCCc----------cccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 33468899999983 4 4555566666777665550 0111 11112556777777763 3555555554
Q ss_pred EE
Q 040307 334 LQ 335 (339)
Q Consensus 334 v~ 335 (339)
++
T Consensus 562 ~~ 563 (591)
T PRK13616 562 LQ 563 (591)
T ss_pred EE
Confidence 44
No 376
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.092 Score=42.23 Aligned_cols=155 Identities=16% Similarity=0.137 Sum_probs=104.5
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCccee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
.-+..+.++ +++...+..+.-++|.|+.+...-..+. .-.+-..++..+ +++...+..|.-+.+.|+.+++.+.
T Consensus 87 ~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs-Gn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS-GNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec-CCEEEEeeccCcEEEEECCCCCCce
Confidence 456677876 4677778888899999998765333221 112334455444 8888888877788999999988776
Q ss_pred eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC-CeeEEEeccCCCCeEEEEeCCCcE
Q 040307 202 IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG-SVNGISWAPLYGRRLCSVADDSRA 280 (339)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~v 280 (339)
..............++. .|++-..+..+++ +.+-|+..+..|...-....+ .+.++..+++. -+++... .-+
T Consensus 163 lagrya~~~~d~~~v~I---SGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~vvy~--egv 235 (370)
T COG5276 163 LAGRYALPGGDTHDVAI---SGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYLVVYD--EGV 235 (370)
T ss_pred eeeeeccCCCCceeEEE---ecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEEEEcc--cce
Confidence 65444334444567776 4678888889999 999999987777654333333 78888888875 3444443 335
Q ss_pred EEEEecCCC
Q 040307 281 LIWEVVGPG 289 (339)
Q Consensus 281 ~iwd~~~~~ 289 (339)
.+-|.....
T Consensus 236 livd~s~~s 244 (370)
T COG5276 236 LIVDVSGPS 244 (370)
T ss_pred EEEecCCCC
Confidence 555555544
No 377
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.15 E-value=0.23 Score=46.66 Aligned_cols=224 Identities=9% Similarity=0.072 Sum_probs=129.1
Q ss_pred CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--------------CeEEEEE
Q 040307 88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--------------TTCVIWD 152 (339)
Q Consensus 88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------~~v~i~d 152 (339)
|+.|+++.+ .+++..++.-+....+++.-+ .....+++.+ ....+++.+.. ..++++|
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~irtvpl~------~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD 756 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHIRTVPLG------ESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD 756 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcceeeecCC------CChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEec
Confidence 345555553 555555554332233333333 3455667764 33444433321 2466777
Q ss_pred CCCCeeeeeee--ccC--CceeEEEec-C-CcEEEEEeC----------CCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307 153 IDREILETQLV--AHD--REVYDISWG-G-FNVFASVSG----------DCSVRVFDLRDKERSTIIYENPVQDCPLLRL 216 (339)
Q Consensus 153 ~~~~~~~~~~~--~~~--~~v~~~~~~-~-~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 216 (339)
-++.+.+...+ ... -.+.++.|. + +.++++|.. .|.|.+|............+. .-++.+.++
T Consensus 757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL 835 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYAL 835 (1096)
T ss_pred CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeeh
Confidence 76665433221 111 234555677 3 667777753 478888888774433333322 123455555
Q ss_pred EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307 217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG 296 (339)
Q Consensus 217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 296 (339)
.- .+|+++|.- +.. |++|+... .+.++.-..+..++..+...-.+ ..++.|.--+++.+-..+..+
T Consensus 836 ~~--fngkllA~I--n~~-vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~~e------- 901 (1096)
T KOG1897|consen 836 VE--FNGKLLAGI--NQS-VRLYEWTT-ERELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKGDE------- 901 (1096)
T ss_pred hh--hCCeEEEec--CcE-EEEEEccc-cceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEeccC-------
Confidence 54 377777754 344 99999987 44566666677889999988888 499999988888888877765
Q ss_pred CCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 297 PSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
+........-+..+++++.+-.+.. ++.+-.+|.+.+
T Consensus 902 --g~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 902 --GNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFT 938 (1096)
T ss_pred --CceEEeehhhCccceeeEEEecCce-EEeecccccEEE
Confidence 0111222234667788888766654 444445555544
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.13 E-value=0.0014 Score=50.22 Aligned_cols=145 Identities=12% Similarity=-0.014 Sum_probs=86.4
Q ss_pred EEEEEeCCCeEEEEECCCCeeee-eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE
Q 040307 138 RVATCSVDTTCVIWDIDREILET-QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL 216 (339)
Q Consensus 138 ~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 216 (339)
.+...+.+|.|.-++++..+... .-..+...-.-+. -+..+++|+.+|.|.+|...........+.. ....+.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~--~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT--ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--GEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc--cCceEEeecccceEEEecCCccchHHHhhhc--ccccceec
Confidence 44555678888877776543211 1111221111111 2678899999999999988733222222221 12233333
Q ss_pred EEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC-CCeeEEEeccCCCCeEEEE--eCCCcEEEEEecCCC
Q 040307 217 EWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-GSVNGISWAPLYGRRLCSV--ADDSRALIWEVVGPG 289 (339)
Q Consensus 217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~--~~dg~v~iwd~~~~~ 289 (339)
.-.-.++.+..+++.++. |+.|++.. .+.+.....|. .++.....+..+ .+++.+ |.|..++.|++....
T Consensus 108 Ip~~~~~~~~c~~~~dg~-ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGR-IRACNIKP-NKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cccccccceeEEeccCCc-eeeecccc-CceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence 322245568889999999 99999875 55566666666 455555555555 477776 778888888887655
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.13 E-value=0.11 Score=42.84 Aligned_cols=285 Identities=10% Similarity=0.019 Sum_probs=127.7
Q ss_pred CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC--CCCceEEEEcCCCCC
Q 040307 8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH--PYTPTNIAFFPSEET 85 (339)
Q Consensus 8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~ 85 (339)
.-+........++.+|.|... ..-+|+|. .+.|.- -...+........- ... .-...++.|..+
T Consensus 7 ~W~~v~l~t~~~l~dV~F~d~---~~G~~VG~-----~g~il~--T~DGG~tW~~~~~~-~~~~~~~~l~~I~f~~~--- 72 (302)
T PF14870_consen 7 SWQQVSLPTDKPLLDVAFVDP---NHGWAVGA-----YGTILK--TTDGGKTWQPVSLD-LDNPFDYHLNSISFDGN--- 72 (302)
T ss_dssp -EEEEE-S-SS-EEEEEESSS---S-EEEEET-----TTEEEE--ESSTTSS-EE------S-----EEEEEEEETT---
T ss_pred CcEEeecCCCCceEEEEEecC---CEEEEEec-----CCEEEE--ECCCCccccccccC-CCccceeeEEEEEecCC---
Confidence 335556667789999999966 77788887 565533 55444444431111 111 123667887643
Q ss_pred CCCCeEEEeCCcEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-e
Q 040307 86 LNPDIVATSGDSLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-V 163 (339)
Q Consensus 86 ~~~~~la~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~ 163 (339)
..+++|...+.+...+.++ ++.+..-..-. .....+.... ++ ....++..|.|+. ..+.++.-..+ .
T Consensus 73 ---~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lp-----gs~~~i~~l~-~~-~~~l~~~~G~iy~-T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 73 ---EGWIVGEPGLLLHTTDGGKTWERVPLSSKLP-----GSPFGITALG-DG-SAELAGDRGAIYR-TTDGGKTWQAVVS 141 (302)
T ss_dssp ---EEEEEEETTEEEEESSTTSS-EE----TT-S-----S-EEEEEEEE-TT-EEEEEETT--EEE-ESSTTSSEEEEE-
T ss_pred ---ceEEEcCCceEEEecCCCCCcEEeecCCCCC-----CCeeEEEEcC-CC-cEEEEcCCCcEEE-eCCCCCCeeEccc
Confidence 4556655455555555444 22221111111 2233343332 33 3333455566543 22334433322 2
Q ss_pred ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecC
Q 040307 164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~ 242 (339)
.-.+.+..+.-+ ++.+++++..-....-||.-...-...... ....+.++.|.| ++.+.+++ ..+. |++=+..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~---~~~riq~~gf~~-~~~lw~~~-~Gg~-~~~s~~~ 215 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN---SSRRIQSMGFSP-DGNLWMLA-RGGQ-IQFSDDP 215 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-T-TS-EEEEE-TTTE-EEEEE-T
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC---ccceehhceecC-CCCEEEEe-CCcE-EEEccCC
Confidence 334567787777 677777765544455677654432222222 246899999998 66665544 4554 7766622
Q ss_pred CCC----CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEE
Q 040307 243 FPT----NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVR 317 (339)
Q Consensus 243 ~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 317 (339)
... +++.......-.+..++|.++++ +.++|+ .|.+ +...+.++ ..+... ...-...++.|.
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGk----------tW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGK----------TWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTS----------S-EE-GGGTTSSS---EEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCc----------cceECccccCCCCceEEEE
Confidence 111 11111111233578999999873 666554 4533 33444444 111111 112345688889
Q ss_pred ecCCCCceEEEecCCeEEEE
Q 040307 318 WSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 318 ~~p~~~~l~~~~~d~~v~~w 337 (339)
|.+..+ -++.+.+|.|.-|
T Consensus 283 f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 283 FVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp EEETTE-EEEE-STTEEEEE
T ss_pred EcCCCc-eEEECCCcEEEEe
Confidence 876654 6777888877654
No 380
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.09 E-value=0.16 Score=43.96 Aligned_cols=155 Identities=11% Similarity=0.082 Sum_probs=92.7
Q ss_pred cccEEEEeeeccccCCeEEEEecCCCCCcccc-eeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc-
Q 040307 31 RKSRLAVGSFLEDYSNKIELVNFNPETSDFSA-DNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR- 107 (339)
Q Consensus 31 ~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~- 107 (339)
+...+++|+ ..|.++||+- ....... ...++.....+|..++.-.-..+.....||.-.- .+.||.+....
T Consensus 36 ~~d~IivGS----~~G~LrIy~P--~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 36 GSDKIIVGS----YSGILRIYDP--SGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred CccEEEEec----cccEEEEEcc--CCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence 367999999 7999999654 3333222 2233556778888887654211111156777664 88889884321
Q ss_pred ------ceeEEEeecCCCccCCCCEEEEEEcCC---C-CCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307 108 ------TELKSLLNSNKTSEFSSAITSFDWAGF---D-TRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-G 176 (339)
Q Consensus 108 ------~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~ 176 (339)
...+..+..|.- ......+++-|. . ..+|+.=+.||.+.+++-+.......+.. ---...+.|+ .
T Consensus 110 ~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~ 185 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPR 185 (418)
T ss_pred CcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeec
Confidence 112222222321 133344444332 2 46888899999999999766543344432 2223346777 5
Q ss_pred CcEEEEEeCCCcEEEEECC
Q 040307 177 FNVFASVSGDCSVRVFDLR 195 (339)
Q Consensus 177 ~~~l~~~~~d~~i~i~d~~ 195 (339)
.+.|++++.+..+..|...
T Consensus 186 tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 186 TDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCEEEEecCceeEEEecHH
Confidence 7788888888888888753
No 381
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.18 Score=43.17 Aligned_cols=106 Identities=14% Similarity=0.258 Sum_probs=70.4
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
...++|.++.||+| .+.||+-- .++.|.++++..+.......... ...+..|....|+... .+....
T Consensus 64 ~d~G~I~SIkFSlD---nkilAVQR----~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s~-----e~A~i~ 130 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLD---NKILAVQR----TSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSST-----EIAFIT 130 (657)
T ss_pred cCCCceeEEEeccC---cceEEEEe----cCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecCe-----eEEEEe
Confidence 34679999999999 99999988 79999998886665444431111 2234458899999876 443333
Q ss_pred CCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307 95 GDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA 140 (339)
Q Consensus 95 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 140 (339)
...+-+|.+...+ ..++..+.++ ..|+-..|.+ +.+.++
T Consensus 131 ~~G~e~y~v~pek-rslRlVks~~-----~nvnWy~yc~-et~v~L 169 (657)
T KOG2377|consen 131 DQGIEFYQVLPEK-RSLRLVKSHN-----LNVNWYMYCP-ETAVIL 169 (657)
T ss_pred cCCeEEEEEchhh-hhhhhhhhcc-----cCccEEEEcc-ccceEe
Confidence 3366666665432 2444455555 7888899997 555433
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.01 E-value=0.004 Score=35.20 Aligned_cols=30 Identities=13% Similarity=0.417 Sum_probs=27.9
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDID 154 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 154 (339)
..|..++|+| ..++||.++.+|.|.++.++
T Consensus 12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 5799999999 99999999999999999983
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.17 Score=42.13 Aligned_cols=152 Identities=11% Similarity=-0.023 Sum_probs=85.0
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC--
Q 040307 130 DWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-- 206 (339)
Q Consensus 130 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-- 206 (339)
.|.+..+.++.+--..+.|.-|+..+++ ...+. +.+.+.++... .+..|+++. ..+.+++.........+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK-KRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 4666334456666667889999987664 23332 33444555554 455555553 34567777555432222221
Q ss_pred CCCCCCeEEEEEecCCCCeEEEEee-----CC---CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CC
Q 040307 207 PVQDCPLLRLEWNKADPRFMATVGM-----DS---NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DD 277 (339)
Q Consensus 207 ~~~~~~v~~~~~~p~~~~~l~~~~~-----d~---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d 277 (339)
.......+.+...| +|.+.+.... .. ..-.||-+...+.....+..+-..-+.++||||+. .|..+. ..
T Consensus 107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~ 184 (307)
T COG3386 107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK-TLYVADTPA 184 (307)
T ss_pred CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC-EEEEEeCCC
Confidence 11224566788887 6666655333 10 01234544422444555555455667999999995 555554 55
Q ss_pred CcEEEEEecC
Q 040307 278 SRALIWEVVG 287 (339)
Q Consensus 278 g~v~iwd~~~ 287 (339)
+.|.-|++..
T Consensus 185 ~~i~r~~~d~ 194 (307)
T COG3386 185 NRIHRYDLDP 194 (307)
T ss_pred CeEEEEecCc
Confidence 7888887774
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.14 Score=41.20 Aligned_cols=196 Identities=13% Similarity=0.209 Sum_probs=113.1
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
+-...+.++.|+|+.. .++++... .-.|+=...++ .+.++.-.. + .....+.|.. ++++.++-=.++.
T Consensus 83 g~~~nvS~LTynp~~r----tLFav~n~p~~iVElt~~Gd--lirtiPL~g---~-~DpE~Ieyig-~n~fvi~dER~~~ 151 (316)
T COG3204 83 GETANVSSLTYNPDTR----TLFAVTNKPAAIVELTKEGD--LIRTIPLTG---F-SDPETIEYIG-GNQFVIVDERDRA 151 (316)
T ss_pred cccccccceeeCCCcc----eEEEecCCCceEEEEecCCc--eEEEecccc---c-CChhHeEEec-CCEEEEEehhcce
Confidence 3344599999999993 44444444 55555545555 444443211 1 3445677774 6666666666888
Q ss_pred EEEEECCCCeeee-------ee--ecc-CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE--EeCCCC-----
Q 040307 148 CVIWDIDREILET-------QL--VAH-DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII--YENPVQ----- 209 (339)
Q Consensus 148 v~i~d~~~~~~~~-------~~--~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~----- 209 (339)
+.++.+..+.... .+ ..+ +.....++|. ....|+.+-.-.-+.||........... ...+..
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 8888776542111 11 112 4567789999 5667777777777888877644311111 111000
Q ss_pred CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC---------CeeEEEeccCCCCeEEEEeCCCcE
Q 040307 210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG---------SVNGISWAPLYGRRLCSVADDSRA 280 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v 280 (339)
-..+.++.|++..+.+|+.+.+++. +.-.|.. +.++..+.-+.+ ..-.|+..++|. |...|+-+..
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~-l~Evd~~--G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~--lYIvSEPnlf 306 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRR-LLEVDLS--GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN--LYIVSEPNLF 306 (316)
T ss_pred eeccccceecCCCCcEEEEecCCce-EEEEecC--CCeeeeEEeccCCCCCcccCCCcceeEECCCCC--EEEEecCCcc
Confidence 1356788999878888888777776 7777765 344544443222 334567777663 4444444433
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.94 E-value=0.17 Score=41.56 Aligned_cols=139 Identities=14% Similarity=0.156 Sum_probs=81.4
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee------
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ------ 161 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~------ 161 (339)
+.|+.|.+ .+.+++..... ........ ..|..+...| +-+.+++-+ |+.++++++..-.....
T Consensus 8 ~~L~vGt~~Gl~~~~~~~~~-~~~~i~~~-------~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 8 DRLLVGTEDGLYVYDLSDPS-KPTRILKL-------SSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CEEEEEECCCEEEEEecCCc-cceeEeec-------ceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 56666665 78999983222 13333332 4599999987 555555544 59999999876543321
Q ss_pred --------eeccCCceeEEE-ec--CCcEEEEEeCCCcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307 162 --------LVAHDREVYDIS-WG--GFNVFASVSGDCSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 162 --------~~~~~~~v~~~~-~~--~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
.......+...+ -. .+...+......+|.+|........ ....+. .-...+.+++|. ++.++.
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~v 153 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKICV 153 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEEEE
Confidence 111233455555 11 3444444445568999888764211 111111 123688999997 466777
Q ss_pred EeeCCCeEEEEecCC
Q 040307 229 VGMDSNKVVVLDIRF 243 (339)
Q Consensus 229 ~~~d~~~i~i~d~~~ 243 (339)
|..++ ..+.|+.+
T Consensus 154 ~~~~~--f~~idl~~ 166 (275)
T PF00780_consen 154 GTSKG--FYLIDLNT 166 (275)
T ss_pred EeCCc--eEEEecCC
Confidence 66554 88999985
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.034 Score=48.16 Aligned_cols=134 Identities=7% Similarity=-0.050 Sum_probs=85.8
Q ss_pred EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC------CCeEEEEeeCCCeEEEEecCCCCC-ceEEE
Q 040307 179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD------PRFMATVGMDSNKVVVLDIRFPTN-PVVVL 251 (339)
Q Consensus 179 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------~~~l~~~~~d~~~i~i~d~~~~~~-~~~~~ 251 (339)
+|.++.....++-.|+..++....-... ..|.-+.+.|+. ...-+.|=.+++ |.=||+|-.+. .+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~----~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~-vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE----DDINMVDITPDFKFAQLTSEQTLVGLSDNS-VFRIDPRVQGKNKLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc----CCcceeeccCCcchhcccccccEEeecCCc-eEEecccccCcceeeee
Confidence 4455556667888888888754443222 235666666521 112234556666 99999987554 23333
Q ss_pred ecCC----CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307 252 SKHE----GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA 327 (339)
Q Consensus 252 ~~~~----~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~ 327 (339)
++|. ....|++-..+| ++++||.+|.|++||--... ....+.+...+|..|..+.+|.++++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~------------AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRR------------AKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhh------------hhhcccccCCceeeEEeeccCcEEEE
Confidence 3332 234555555565 89999999999999983332 12245567889999999999997777
Q ss_pred EecC
Q 040307 328 IAFV 331 (339)
Q Consensus 328 ~~~d 331 (339)
+|..
T Consensus 489 Tc~t 492 (644)
T KOG2395|consen 489 TCKT 492 (644)
T ss_pred eccc
Confidence 6654
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.87 E-value=0.2 Score=41.40 Aligned_cols=232 Identities=12% Similarity=0.148 Sum_probs=103.9
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEE
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLR 99 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~ 99 (339)
..+|.|..+ ..+++|. .+.|.- -...+....... +....++....+....++ ..++.+. .-.
T Consensus 64 l~~I~f~~~----~g~ivG~-----~g~ll~--T~DgG~tW~~v~-l~~~lpgs~~~i~~l~~~-----~~~l~~~-~G~ 125 (302)
T PF14870_consen 64 LNSISFDGN----EGWIVGE-----PGLLLH--TTDGGKTWERVP-LSSKLPGSPFGITALGDG-----SAELAGD-RGA 125 (302)
T ss_dssp EEEEEEETT----EEEEEEE-----TTEEEE--ESSTTSS-EE-----TT-SS-EEEEEEEETT-----EEEEEET-T--
T ss_pred EEEEEecCC----ceEEEcC-----CceEEE--ecCCCCCcEEee-cCCCCCCCeeEEEEcCCC-----cEEEEcC-CCc
Confidence 566777543 3455555 554433 444455554311 111223444555555554 4444443 233
Q ss_pred EEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCc
Q 040307 100 LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFN 178 (339)
Q Consensus 100 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~ 178 (339)
||...++...-........ ..+..+.-++ ++.+++++..-....-||.-...-...-..-...|..|.|. ++.
T Consensus 126 iy~T~DgG~tW~~~~~~~~-----gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~ 199 (302)
T PF14870_consen 126 IYRTTDGGKTWQAVVSETS-----GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN 199 (302)
T ss_dssp EEEESSTTSSEEEEE-S---------EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-
T ss_pred EEEeCCCCCCeeEcccCCc-----ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC
Confidence 4554444312222223323 6788888887 99988888765556677753322111112345789999999 555
Q ss_pred EEEEEeCCCcEEEEECCC-Ccceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---
Q 040307 179 VFASVSGDCSVRVFDLRD-KERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--- 253 (339)
Q Consensus 179 ~l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--- 253 (339)
+.+ ....|.|+.=+... .+.-.. +.........+..++|.+ ++...++|+ .+. .+..... ++.-.....
T Consensus 200 lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~--l~~S~Dg-GktW~~~~~~~~ 273 (302)
T PF14870_consen 200 LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGT--LLVSTDG-GKTWQKDRVGEN 273 (302)
T ss_dssp EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT---EEEESST-TSS-EE-GGGTT
T ss_pred EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-Ccc--EEEeCCC-CccceECccccC
Confidence 544 44888888877221 111111 111111234578999986 666666554 443 2333333 443333332
Q ss_pred CCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307 254 HEGSVNGISWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 254 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw 283 (339)
-...++.|.|.+.. +-+ ..+.+|.|.=|
T Consensus 274 ~~~n~~~i~f~~~~-~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVNPD-KGF-VLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEETT-EEE-EE-STTEEEEE
T ss_pred CCCceEEEEEcCCC-ceE-EECCCcEEEEe
Confidence 23467889988664 344 44557766544
No 388
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.81 E-value=0.26 Score=41.74 Aligned_cols=79 Identities=16% Similarity=0.057 Sum_probs=43.6
Q ss_pred ceEEEecCCCCeeEEEeccCC------CCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee-eecccceeEEEEec
Q 040307 247 PVVVLSKHEGSVNGISWAPLY------GRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWS 319 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~p~~------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 319 (339)
|+..+..| ..+..+.|.+.. ..++++.-..+.|...++..... ...... .......+.++++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS---------VTEEEEFLGGFGGRPRDVAQG 314 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE---------EEEEEEECTTSSS-EEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC---------ccceEEccccCCCCceEEEEc
Confidence 44445444 566777776432 13555555566777777765440 001112 22345589999999
Q ss_pred CCCCceEEEecCCeEE
Q 040307 320 PLELDWIAIAFVNKLQ 335 (339)
Q Consensus 320 p~~~~l~~~~~d~~v~ 335 (339)
|||..+++...+|.|.
T Consensus 315 pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 PDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTSEEEEEE-TTTTEE
T ss_pred CCCeEEEEECCCCeEe
Confidence 9998777777777763
No 389
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.29 Score=42.33 Aligned_cols=244 Identities=13% Similarity=0.115 Sum_probs=145.1
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
......+...|+ +..+.+... ..+.+.. .+........ ....+. .....++.++.+. +.++...+
T Consensus 30 ~~~~~~v~~~~~---g~~~~v~~~---~~~~~~~--~~~~~n~~~~--~~~~g~-~~p~~i~v~~~~~----~vyv~~~~ 94 (381)
T COG3391 30 GRGPGGVAVNPD---GTQVYVANS---GSNDVSV--IDATSNTVTQ--SLSVGG-VYPAGVAVNPAGN----KVYVTTGD 94 (381)
T ss_pred CCCCceeEEcCc---cCEEEEEee---cCceeee--cccccceeee--eccCCC-ccccceeeCCCCC----eEEEecCC
Confidence 345667778888 644444331 2233444 4444222221 110111 4456788888884 56666643
Q ss_pred --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
.|.+.|..... ........ .....++++| +++.+..+.. ++++.+.|..+.+.......-..+ ..
T Consensus 95 ~~~v~vid~~~~~--~~~~~~vG------~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~ 164 (381)
T COG3391 95 SNTVSVIDTATNT--VLGSIPVG------LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG 164 (381)
T ss_pred CCeEEEEcCcccc--eeeEeeec------cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence 99999977665 33333321 2345789998 7766666555 689999999888877775433334 78
Q ss_pred EEec-CCcEEE-EEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC---CeEEEEecCCCC
Q 040307 172 ISWG-GFNVFA-SVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMATVGMDS---NKVVVLDIRFPT 245 (339)
Q Consensus 172 ~~~~-~~~~l~-~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~---~~i~i~d~~~~~ 245 (339)
+++. +++.+. +-..++.|.+.|........ .....-........+.++| ++..+.+..... . +...|... .
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~-v~~id~~~-~ 241 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNN-VLKIDTAT-G 241 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCce-EEEEeCCC-c
Confidence 8898 676444 44578999999977665331 1000001123456788998 777655544443 5 88888876 3
Q ss_pred CceEE-EecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCC
Q 040307 246 NPVVV-LSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPG 289 (339)
Q Consensus 246 ~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~ 289 (339)
..... ..........+..+|+|. .+.+. +..+.+.+-|.....
T Consensus 242 ~v~~~~~~~~~~~~~~v~~~p~g~-~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 242 NVTATDLPVGSGAPRGVAVDPAGK-AAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred eEEEeccccccCCCCceeECCCCC-EEEEEecCCCeEEEEeCCCCc
Confidence 22222 121111456789999994 66655 445788888887765
No 390
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.3 Score=42.32 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=113.1
Q ss_pred EEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceee
Q 040307 126 ITSFDWAGFDTRRVATCS-VDTTCVIWDIDREILETQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 126 i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 202 (339)
...+...| .+..+.... ....+...+............-...-..++.+ .++ .++....+..|.+.|.........
T Consensus 33 ~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 33 PGGVAVNP-DGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CceeEEcC-ccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 44666776 553333332 22345555544222111111111233466676 444 666666678999999877775555
Q ss_pred EEeCCCCCCCeEEEEEecCCCCeEEEEee---CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307 203 IYENPVQDCPLLRLEWNKADPRFMATVGM---DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR 279 (339)
Q Consensus 203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 279 (339)
.... .....++++| +++.+.++.. ++. +.+.|... .+...+...-..+ ..++++|++.+.+++-..++.
T Consensus 112 ~~vG----~~P~~~~~~~-~~~~vYV~n~~~~~~~-vsvid~~t-~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 112 IPVG----LGPVGLAVDP-DGKYVYVANAGNGNNT-VSVIDAAT-NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeec----cCCceEEECC-CCCEEEEEecccCCce-EEEEeCCC-CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCe
Confidence 4444 2667899998 6666666555 455 88888876 4445554443344 899999999645556668899
Q ss_pred EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC---CeEEEE
Q 040307 280 ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV---NKLQLL 337 (339)
Q Consensus 280 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d---~~v~~w 337 (339)
|.+.|........ ..+.....-......+.++|++.++...... +.+...
T Consensus 184 v~vi~~~~~~v~~--------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 184 VSVIDTSGNSVVR--------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred EEEEeCCCcceec--------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 9999976655000 0000112233445688999999865544322 355443
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.78 E-value=0.29 Score=42.04 Aligned_cols=254 Identities=13% Similarity=0.107 Sum_probs=111.1
Q ss_pred Cceeeeeecc---CCeeEEEee-------ecC-CcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEee--cCC---
Q 040307 8 KPGVHTYMAQ---WPISTVAWS-------VRH-DRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIF--DHP--- 71 (339)
Q Consensus 8 ~~~~~~~~~~---~~v~~i~~s-------p~~-~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~--~~~--- 71 (339)
++.+.+...+ +.....-|+ ++. ...++|++.+. ..+.|+|+|...+-........++. -+.
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL---~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g 128 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGL---RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTG 128 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBT---TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeee---ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcC
Confidence 3555555432 456666665 111 12667777664 7899999777654444333223321 011
Q ss_pred -CCceEEEEcCCCCCCCCCeEEEeC-----C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 72 -YTPTNIAFFPSEETLNPDIVATSG-----D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 72 -~~v~~l~~~~~~~~~~~~~la~~~-----~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.....+..-|++ ++++++- + .+.+.|-++.+ .....+.... ...--..+-|.| ..+.++|+
T Consensus 129 ~s~PHT~Hclp~G-----~imIS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~--~~~~gYDfw~qp-r~nvMiSS 198 (461)
T PF05694_consen 129 LSRPHTVHCLPDG-----RIMISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRG--PQPFGYDFWYQP-RHNVMISS 198 (461)
T ss_dssp EEEEEEEEE-SS-------EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-T--T------EEEET-TTTEEEE-
T ss_pred CCCCceeeecCCc-----cEEEEeccCCCCCCCCcEEEEcCcccc--ccceeccCCC--CCCCCCCeEEcC-CCCEEEEe
Confidence 223445556788 7888762 1 67777766554 4443333210 012345777887 66777775
Q ss_pred e--------------------CCCeEEEEECCCCeeeeeeeccC--CceeEEEec--C--CcEEEEEeCCCcEEEEEC-C
Q 040307 143 S--------------------VDTTCVIWDIDREILETQLVAHD--REVYDISWG--G--FNVFASVSGDCSVRVFDL-R 195 (339)
Q Consensus 143 ~--------------------~d~~v~i~d~~~~~~~~~~~~~~--~~v~~~~~~--~--~~~l~~~~~d~~i~i~d~-~ 195 (339)
. ...++.+||+.+.+.++++.--. .....+.|. | ..-|+.+...++|..|-- .
T Consensus 199 eWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~ 278 (461)
T PF05694_consen 199 EWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD 278 (461)
T ss_dssp B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E
T ss_pred ccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC
Confidence 3 23589999999999998885332 245678887 3 233444445555555543 3
Q ss_pred CCcc----eeeEEeC-------CCC-------CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC---
Q 040307 196 DKER----STIIYEN-------PVQ-------DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH--- 254 (339)
Q Consensus 196 ~~~~----~~~~~~~-------~~~-------~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--- 254 (339)
.++- ...+... +.. ..-++.|..|. +.++|.+.+--.+.|+.||+..+.+|...-+..
T Consensus 279 ~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 279 DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECc
Confidence 3321 1111000 000 23578899997 777776665544449999999877765443211
Q ss_pred ---------------CCCeeEEEeccCCCCeEEEEe
Q 040307 255 ---------------EGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 255 ---------------~~~v~~~~~~p~~~~~l~~~~ 275 (339)
.+...-+..|.||.++.+|.|
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 112356788888854555544
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.76 E-value=0.18 Score=39.27 Aligned_cols=100 Identities=6% Similarity=-0.009 Sum_probs=66.7
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEe--ecCCcc---eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWE--IHDDRT---ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~--~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.-.--+.++|+.+.+ .+..+-+ + +|.-|| ..++.. ..+..++..+..+. ..--.++... ++++.+++
T Consensus 156 ~v~IsNgl~Wd~d~K----~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~-eG~L~Va~ 229 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAK----KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDT-EGNLYVAT 229 (310)
T ss_pred hccCCccccccccCc----EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEcc-CCcEEEEE
Confidence 334457899998874 4445544 4 787787 455431 12222222111111 1122445554 88999999
Q ss_pred eCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
-..++|...|..+++.+..+.-....|+|++|-
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 999999999999999999988788899999998
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.72 E-value=0.21 Score=45.54 Aligned_cols=191 Identities=12% Similarity=0.137 Sum_probs=102.9
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C------cEEEEeec
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D------SLRLWEIH 104 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~------~i~iw~~~ 104 (339)
+.+.++|+...+....-.+|.++.....+...+.+ .....=.+++- -++ .+.|.|| + ++..||..
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M--~~~R~~~~v~~-l~g-----~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM--NTKRSDFGVAV-LDG-----KLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCc--cCccccceeEE-ECC-----EEEEEeccccccccccEEEecCC
Confidence 56778888311111122344466665555542233 11111122222 245 6888877 2 79999999
Q ss_pred CCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC------eEEEEECCCCe--eeeeeeccCCceeEEEecC
Q 040307 105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT------TCVIWDIDREI--LETQLVAHDREVYDISWGG 176 (339)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~ 176 (339)
+.++.....+.... ....... .++.+.++|+.++ ++..||..+++ .+..+..-... ..++.-+
T Consensus 405 ~~~W~~va~m~~~r-----~~~gv~~---~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~ 475 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRR-----SGHGVAV---LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLN 475 (571)
T ss_pred CCcccccCCCCcce-----eeeEEEE---ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEEEEC
Confidence 98876665443321 2222222 2788888888654 56788887765 22222111111 2244446
Q ss_pred CcEEEEEeCCCc-----EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCC
Q 040307 177 FNVFASVSGDCS-----VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRF 243 (339)
Q Consensus 177 ~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~ 243 (339)
+.+++.|+.|+. |..||..+.+-... .........+..+. .++.+.++|+.++. .|..||...
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCC
Confidence 888899988763 77788888763333 11111112222222 27788888888875 366666544
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.72 E-value=0.24 Score=40.12 Aligned_cols=151 Identities=18% Similarity=0.144 Sum_probs=86.0
Q ss_pred ceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe-cCCC
Q 040307 168 EVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD-IRFP 244 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d-~~~~ 244 (339)
.+.+.+++ ++..++... .++.-.+|-.+........... ..+....|++ ++...++...+.. .+++. ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g----~~l~~PS~d~-~g~~W~v~~~~~~-~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG----GSLTRPSWDP-DGWVWTVDDGSGG-VRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC----CccccccccC-CCCEEEEEcCCCc-eEEEEecCCC
Confidence 67888999 777666555 2333344444444333333322 4778889998 5777766665555 66663 2221
Q ss_pred CCceEEEecC--CCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEe
Q 040307 245 TNPVVVLSKH--EGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRW 318 (339)
Q Consensus 245 ~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 318 (339)
......+... ...|..+.+||||. .++... .++.|.+=-+...... .+.....+.... .....+.+++|
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g----~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDG----VPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCC----CcceeccceEecccccCcceeeee
Confidence 2212222222 12899999999995 555444 3577877777655411 011111222222 33567999999
Q ss_pred cCCCCceEEEe
Q 040307 319 SPLELDWIAIA 329 (339)
Q Consensus 319 ~p~~~~l~~~~ 329 (339)
.+++..++.+.
T Consensus 174 ~~~~~L~V~~~ 184 (253)
T PF10647_consen 174 SDDSTLVVLGR 184 (253)
T ss_pred cCCCEEEEEeC
Confidence 99998655544
No 395
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.66 E-value=0.46 Score=42.69 Aligned_cols=141 Identities=11% Similarity=-0.018 Sum_probs=77.3
Q ss_pred CCCEEEEEeCCC------------------eEEEEECCCCeeeeeeeccCCce-----------eEEE-ec--CCcEEEE
Q 040307 135 DTRRVATCSVDT------------------TCVIWDIDREILETQLVAHDREV-----------YDIS-WG--GFNVFAS 182 (339)
Q Consensus 135 ~~~~l~~~~~d~------------------~v~i~d~~~~~~~~~~~~~~~~v-----------~~~~-~~--~~~~l~~ 182 (339)
.+..++.++.++ .|.-+|.++++.+..++.-.... ..+. .. +...++.
T Consensus 227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~ 306 (488)
T cd00216 227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVH 306 (488)
T ss_pred CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEE
Confidence 456677776554 79999999999887764211111 1111 11 1236778
Q ss_pred EeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE------------------eeCCCeEEEEecCCC
Q 040307 183 VSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV------------------GMDSNKVVVLDIRFP 244 (339)
Q Consensus 183 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~------------------~~d~~~i~i~d~~~~ 244 (339)
++.+|.+...|.++++..=..... ...++.+| ..++.+ ..++. +.-.|+.+
T Consensus 307 g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~t- 375 (488)
T cd00216 307 APKNGFFYVLDRTTGKLISARPEV------EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKT- 375 (488)
T ss_pred ECCCceEEEEECCCCcEeeEeEee------ccccccCC---ceEEEccccccccCcccccCCCCCCCceE-EEEEeCCC-
Confidence 888999999999998743221110 01122222 222221 12344 66666665
Q ss_pred CCceEEEecCC--------CCee--EEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 245 TNPVVVLSKHE--------GSVN--GISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 245 ~~~~~~~~~~~--------~~v~--~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
++.+-+..... .+.. .+. -.+ .+|+.++.||.|+.+|..+++
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g-~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAG-NLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceE--ecC-CeEEEECCCCeEEEEECCCCc
Confidence 33333332210 1111 111 234 478888899999999999988
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.012 Score=55.04 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=77.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC
Q 040307 177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG 256 (339)
Q Consensus 177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~ 256 (339)
+..++.|+..|.+-..|.+..-.+ ........++|++++|+. +|..++.|-.+|- |.+||+.. +++++.+..|..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~-V~v~D~~~-~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGH-VTVWDMHR-AKILKVITEHGA 173 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcceeeEecC-CCceeccccCCCc-EEEEEccC-CcceeeeeecCC
Confidence 667888998999999998875322 222233568999999995 9999999999998 99999987 677888877776
Q ss_pred CeeEE---EeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 257 SVNGI---SWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 257 ~v~~~---~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
+..++ .+..++ ..++++...|. +|++.-.
T Consensus 174 p~t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQN-SKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred ccceEEEEEEeCCC-cEEEEccCCCc--eEEEEec
Confidence 65554 444555 36778877776 6665443
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.61 E-value=0.65 Score=43.83 Aligned_cols=277 Identities=10% Similarity=0.059 Sum_probs=154.4
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC---------------
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--------------- 96 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--------------- 96 (339)
+..|+++. .+.+.+..++.-...... + ..-...+..+++.+.. ..+++.++
T Consensus 684 ~d~l~~~~-----~~~l~i~tid~iqkl~ir--t--vpl~~~prrI~~q~~s-----l~~~v~s~r~e~~~~~~~ee~~~ 749 (1096)
T KOG1897|consen 684 PDSLASAN-----GGALTIGTIDEIQKLHIR--T--VPLGESPRRICYQESS-----LTFGVLSNRIESSAEYYGEEYEV 749 (1096)
T ss_pred CceEEEec-----CCceEEEEecchhhccee--e--ecCCCChhheEecccc-----eEEEEEecccccchhhcCCcceE
Confidence 45666666 678888666654433332 1 3334456677777644 44444331
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccC--CCCEEEEEEcCCCCCEEEEEeC----------CCeEEEEECCCCeeeeeee
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEF--SSAITSFDWAGFDTRRVATCSV----------DTTCVIWDIDREILETQLV 163 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~----------d~~v~i~d~~~~~~~~~~~ 163 (339)
.++++|-++-+ .+..|+.... ...|.+..|....+.+++.|.. .|.|.++.......+....
T Consensus 750 s~l~vlD~nTf~-----vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~ 824 (1096)
T KOG1897|consen 750 SFLRVLDQNTFE-----VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA 824 (1096)
T ss_pred EEEEEecCCcee-----EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee
Confidence 34555554443 2222321111 1345555687522667777753 5788888877644343332
Q ss_pred cc--CCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 164 AH--DREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 164 ~~--~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
.+ .+.+.++.--++.++|.- ...|++|+....+.... .. .+..++..+...- .++.+++|..-+. +.+.-.
T Consensus 825 e~~v~Gav~aL~~fngkllA~I--n~~vrLye~t~~~eLr~-e~--~~~~~~~aL~l~v-~gdeI~VgDlm~S-itll~y 897 (1096)
T KOG1897|consen 825 ETVVKGAVYALVEFNGKLLAGI--NQSVRLYEWTTERELRI-EC--NISNPIIALDLQV-KGDEIAVGDLMRS-ITLLQY 897 (1096)
T ss_pred eeeeccceeehhhhCCeEEEec--CcEEEEEEccccceehh-hh--cccCCeEEEEEEe-cCcEEEEeeccce-EEEEEE
Confidence 22 344444443357766644 56899999988753332 22 2456777887774 8899999988887 776665
Q ss_pred CCCCCceEEE--ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc------cceeeeccccee
Q 040307 242 RFPTNPVVVL--SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV------EPELCYQSMAEI 313 (339)
Q Consensus 242 ~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i 313 (339)
+.....+..+ ..+..+.+++.+-.+. .++.+..+|.+.+-..+.......+....... +....+.|..-|
T Consensus 898 ~~~eg~f~evArD~~p~Wmtaveil~~d--~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv 975 (1096)
T KOG1897|consen 898 KGDEGNFEEVARDYNPNWMTAVEILDDD--TYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLV 975 (1096)
T ss_pred eccCCceEEeehhhCccceeeEEEecCc--eEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceE
Confidence 5433223322 2356678888887664 56677778888888776544211111111111 112233444444
Q ss_pred EE--EEecCCCCceEEEecCCeEEE
Q 040307 314 NV--VRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 314 ~~--~~~~p~~~~l~~~~~d~~v~~ 336 (339)
.+ -.-+|.++.++.+.-+|.|-+
T Consensus 976 ~~~~~s~~~~~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 976 MQLGDSMIPLEPKVLFGTVNGSIGI 1000 (1096)
T ss_pred eeccccccCCCCcEEEEEccceEEE
Confidence 44 234455666777777777644
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.01 Score=55.56 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=51.2
Q ss_pred CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+..++.|+..|. +-..|++..-.+...-..-.++|++++|+.+| ++++.|-.+|.|.+||+...+
T Consensus 98 ~~~~ivi~Ts~gh-vl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGH-VLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred eeeeEEEEcCchh-hhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCc
Confidence 4556777777776 99998876333333333345799999999999 699999999999999999977
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.59 E-value=0.46 Score=42.24 Aligned_cols=128 Identities=9% Similarity=0.162 Sum_probs=75.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS 143 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 143 (339)
.+.-..|..+.|.|-+...-|.+||.-.. .|.||.+.... .+.+..-..+-.+.+.---.++.|+| ....|+.-.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT 131 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLT 131 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEe
Confidence 34445689999999876666789999887 99999986322 11111111111111111223678999 666665544
Q ss_pred CCCeEEEEECCCC--eeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCC
Q 040307 144 VDTTCVIWDIDRE--ILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDK 197 (339)
Q Consensus 144 ~d~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~ 197 (339)
....-.+++++.. +...-++ ..+.|.|.+|. ||+.|+.+- ..=.-++||-...
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 4333334555432 3333443 46789999999 877766553 3445678886554
No 400
>PRK13684 Ycf48-like protein; Provisional
Probab=96.56 E-value=0.39 Score=40.68 Aligned_cols=278 Identities=10% Similarity=-0.025 Sum_probs=133.6
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.....++++|.|... ..-+|+|. ++.|.. -...+........-.......+.++.|.++ ..+++
T Consensus 42 ~~~~~~l~~v~F~d~---~~g~avG~-----~G~il~--T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~------~~~~~ 105 (334)
T PRK13684 42 LPTEANLLDIAFTDP---NHGWLVGS-----NRTLLE--TNDGGETWEERSLDLPEENFRLISISFKGD------EGWIV 105 (334)
T ss_pred cCCCCceEEEEEeCC---CcEEEEEC-----CCEEEE--EcCCCCCceECccCCcccccceeeeEEcCC------cEEEe
Confidence 344668999999866 67788887 566544 444444444311100012234778888643 34555
Q ss_pred eCCcEEEEeecCC-c-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCcee
Q 040307 94 SGDSLRLWEIHDD-R-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVY 170 (339)
Q Consensus 94 ~~~~i~iw~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~ 170 (339)
+.... ||...++ + ++......... . ......... .+..+ .++..|.|.. ..+.++.-..+. .-...+.
T Consensus 106 G~~g~-i~~S~DgG~tW~~~~~~~~~~--~--~~~~i~~~~--~~~~~-~~g~~G~i~~-S~DgG~tW~~~~~~~~g~~~ 176 (334)
T PRK13684 106 GQPSL-LLHTTDGGKNWTRIPLSEKLP--G--SPYLITALG--PGTAE-MATNVGAIYR-TTDGGKNWEALVEDAAGVVR 176 (334)
T ss_pred CCCce-EEEECCCCCCCeEccCCcCCC--C--CceEEEEEC--CCcce-eeeccceEEE-ECCCCCCceeCcCCCcceEE
Confidence 44322 3333332 2 22221110010 0 122222232 22233 3445555543 222344333322 2245678
Q ss_pred EEEecCCcEEEEEeCCCcEEEE-ECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 171 DISWGGFNVFASVSGDCSVRVF-DLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 171 ~~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
++.+.++..++..+..|.+..- |- .++.-...... ....+..+.+.| ++..++++ ..+. + +......+....
T Consensus 177 ~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~--~~~~l~~i~~~~-~g~~~~vg-~~G~-~-~~~s~d~G~sW~ 249 (334)
T PRK13684 177 NLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRN--SSRRLQSMGFQP-DGNLWMLA-RGGQ-I-RFNDPDDLESWS 249 (334)
T ss_pred EEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCC--CcccceeeeEcC-CCCEEEEe-cCCE-E-EEccCCCCCccc
Confidence 8888854555555566655432 21 11212222222 346788999987 67766654 4453 3 332112122222
Q ss_pred EEec----CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-ecccceeEEEEecCCCCc
Q 040307 250 VLSK----HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQSMAEINVVRWSPLELD 324 (339)
Q Consensus 250 ~~~~----~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~ 324 (339)
.... ....+.++.+.|++ .++ .++.+|.+. .....++ ....... ..-....+.+.|..++.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~-~~~-~~G~~G~v~-~S~d~G~----------tW~~~~~~~~~~~~~~~~~~~~~~~- 315 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPG-EIW-AGGGNGTLL-VSKDGGK----------TWEKDPVGEEVPSNFYKIVFLDPEK- 315 (334)
T ss_pred cccCCccccccceeeEEEcCCC-CEE-EEcCCCeEE-EeCCCCC----------CCeECCcCCCCCcceEEEEEeCCCc-
Confidence 1111 12357889999987 344 455566554 3333333 1111111 11234577888877665
Q ss_pred eEEEecCCeEEEE
Q 040307 325 WIAIAFVNKLQLL 337 (339)
Q Consensus 325 l~~~~~d~~v~~w 337 (339)
.++++..|.|.-|
T Consensus 316 ~~~~G~~G~il~~ 328 (334)
T PRK13684 316 GFVLGQRGVLLRY 328 (334)
T ss_pred eEEECCCceEEEe
Confidence 6777888877655
No 401
>PRK10115 protease 2; Provisional
Probab=96.48 E-value=0.77 Score=43.13 Aligned_cols=246 Identities=9% Similarity=0.060 Sum_probs=116.2
Q ss_pred CeeEEEeeecCCcccEEEEeee-ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307 19 PISTVAWSVRHDRKSRLAVGSF-LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-- 95 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-- 95 (339)
.+..+.|||+ +++||.+.- .+++...|++.+ ..++.... .. ... .-..++|.++++ .++.+..
T Consensus 128 ~l~~~~~Spd---g~~la~~~d~~G~E~~~l~v~d--~~tg~~l~--~~-i~~--~~~~~~w~~D~~----~~~y~~~~~ 193 (686)
T PRK10115 128 TLGGMAITPD---NTIMALAEDFLSRRQYGIRFRN--LETGNWYP--EL-LDN--VEPSFVWANDSW----TFYYVRKHP 193 (686)
T ss_pred EEeEEEECCC---CCEEEEEecCCCcEEEEEEEEE--CCCCCCCC--cc-ccC--cceEEEEeeCCC----EEEEEEecC
Confidence 4667889999 999998763 222333466644 44444222 11 111 125699999983 3544432
Q ss_pred ---C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECC--CCeeeeeeecc
Q 040307 96 ---D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDID--REILETQLVAH 165 (339)
Q Consensus 96 ---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~--~~~~~~~~~~~ 165 (339)
. .|..+++.++.......+.... ....-..+.+.++++++..+. ++.+.+++.. .++....+...
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~~-----~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDELVYEEKD-----DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR 268 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeEEEeeCC-----CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC
Confidence 1 6777888777322333343322 222222233336666555443 4578888843 33322222211
Q ss_pred CCceeEEEec-CCcEEEEEeCC-Cc--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eEEEEe
Q 040307 166 DREVYDISWG-GFNVFASVSGD-CS--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-KVVVLD 240 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~i~d 240 (339)
......+. + .+.+++....+ .. |...++........+... .....+..+.+. .+.++++...++. .+.+++
T Consensus 269 ~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 269 KDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence 22222222 3 23333333222 23 433444422222233322 123467778886 3455555555554 345555
Q ss_pred cCCCCCceEEEe-cCCCCeeEEEec--cCCCCeEEEEeC---CCcEEEEEecCCC
Q 040307 241 IRFPTNPVVVLS-KHEGSVNGISWA--PLYGRRLCSVAD---DSRALIWEVVGPG 289 (339)
Q Consensus 241 ~~~~~~~~~~~~-~~~~~v~~~~~~--p~~~~~l~~~~~---dg~v~iwd~~~~~ 289 (339)
.. ...+..+. .....+..+.++ ++++.++++.+. -+.+..+|+.+.+
T Consensus 345 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 345 RK--TREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CC--CCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 43 22334433 222233333444 444345554442 3567777776543
No 402
>PHA03098 kelch-like protein; Provisional
Probab=96.46 E-value=0.62 Score=42.47 Aligned_cols=142 Identities=8% Similarity=0.019 Sum_probs=73.0
Q ss_pred CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCC
Q 040307 89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD------TTCVIWDIDR 155 (339)
Q Consensus 89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~ 155 (339)
.+++.||. .+..||..++++.....+.... ... +++.. +++.++.|+.+ ..+..||+.+
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-----~~~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-----YNP-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-----ccc-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence 67777761 5788888887755443333211 111 22222 56777777742 4588899876
Q ss_pred Ceee--eeeeccCCceeEEEecCCcEEEEEeCCC--------cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307 156 EILE--TQLVAHDREVYDISWGGFNVFASVSGDC--------SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF 225 (339)
Q Consensus 156 ~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 225 (339)
.+-. ..+..... -.++...++.+++.|+.+. .+.+||..+.+-... ...+........+.+ ++.+
T Consensus 416 ~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~---~~~i 490 (534)
T PHA03098 416 NKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLCIF---NNKI 490 (534)
T ss_pred CeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CCCCcccccceEEEE---CCEE
Confidence 5411 11111111 1123333577777776532 388899887652221 111111111122222 5677
Q ss_pred EEEEeeCC----CeEEEEecCC
Q 040307 226 MATVGMDS----NKVVVLDIRF 243 (339)
Q Consensus 226 l~~~~~d~----~~i~i~d~~~ 243 (339)
++.|+.++ ..+.+||...
T Consensus 491 yv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 491 YVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEEcCCcCCcccceeEEEeCCC
Confidence 77777652 1378888765
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.63 Score=42.62 Aligned_cols=177 Identities=11% Similarity=0.136 Sum_probs=88.4
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee--e--eccCCceeEE
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ--L--VAHDREVYDI 172 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~--~~~~~~v~~~ 172 (339)
.|+||+.... .+..+.-.. ..+-.+.|+ +...|++-..+|++++|++- |+.+.. . ......|..+
T Consensus 65 ~I~If~~sG~---lL~~~~w~~-----~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 65 YIRIFNISGQ---LLGRILWKH-----GELIGMGWS--DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVEC 133 (829)
T ss_pred eEEEEecccc---chHHHHhcC-----CCeeeeccc--CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEE
Confidence 7888887654 333222222 478899998 55677777899999999984 322222 1 1122234444
Q ss_pred Eec-CCcEEEEEeCCCcEEEE-ECCCCcceeeEEeCCCCCCCeEEEEEecCC--CCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 173 SWG-GFNVFASVSGDCSVRVF-DLRDKERSTIIYENPVQDCPLLRLEWNKAD--PRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
.+. +|-.+++ .+|.+.+- +..... .......|....+..+-...++. ...++-....-. ..++.........
T Consensus 134 ~~f~~GVavlt--~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 134 RFFHNGVAVLT--VSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL 209 (829)
T ss_pred EEecCceEEEe--cCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence 443 4433333 34444433 333222 11111111111111121111111 112221111111 2233222222222
Q ss_pred EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
..+......+..+..||+. ++|+--..+|.+.+-+.+..+
T Consensus 210 ~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred cccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecchhh
Confidence 2333334578899999998 699999999999998887766
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.42 E-value=0.14 Score=46.62 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=62.0
Q ss_pred CeEEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEec--cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307 224 RFMATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWA--PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~--p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
+.++....++..+.|||.+... ...+-. ...+.|..+.|. |++ +.+++.+..+.|.+|--.... ....+.....
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~d-y~~~~p~w~~ 117 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV-LEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYD-YTNKGPSWAP 117 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE-EEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchh-hhcCCcccce
Confidence 3455556666679999998633 221111 346789999886 567 577777788888888543211 0000000011
Q ss_pred ccceeeeccc-ceeEEEEecCCCCceEEEecCCeEEEE
Q 040307 301 VEPELCYQSM-AEINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 301 ~~~~~~~~~~-~~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
+..+.+..+. .+|.+..|.++|. ++ ++.++.+.|+
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~sGNqlfv~ 153 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGT-LV-VGSGNQLFVF 153 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCe-EE-EEeCCEEEEE
Confidence 1122233443 6799999999995 33 3334455554
No 405
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.38 E-value=0.7 Score=41.54 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=80.0
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEE-EEEEcCCCCCEEEEEe---------CCCeEEEEECCCCe
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAIT-SFDWAGFDTRRVATCS---------VDTTCVIWDIDREI 157 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~---------~d~~v~i~d~~~~~ 157 (339)
.+++...+ .|+-+|.++++ .+-.+...........+. ...+. + ..++.++ .++.+..+|..+++
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred eEEEecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 55555555 88999999887 443333221000000011 11121 2 3444443 36889999999998
Q ss_pred eeeeeeccCCc--------------------e-eEEEec-CCcEEEEEeCCC------------------cEEEEECCCC
Q 040307 158 LETQLVAHDRE--------------------V-YDISWG-GFNVFASVSGDC------------------SVRVFDLRDK 197 (339)
Q Consensus 158 ~~~~~~~~~~~--------------------v-~~~~~~-~~~~l~~~~~d~------------------~i~i~d~~~~ 197 (339)
.+..+...... + ....+. .+..++.++.++ .|.-+|..++
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 77766432110 1 122333 256677776554 6888898888
Q ss_pred cceeeEEeCCCCCC----CeEEEEEe---cCCCC---eEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 198 ERSTIIYENPVQDC----PLLRLEWN---KADPR---FMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 198 ~~~~~~~~~~~~~~----~v~~~~~~---p~~~~---~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
+..=..... .+.. ......+. ..++. .+++++.++. +..+|.++ ++++-..
T Consensus 267 ~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~-l~ald~~t-G~~~W~~ 327 (488)
T cd00216 267 KVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGF-FYVLDRTT-GKLISAR 327 (488)
T ss_pred CEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCce-EEEEECCC-CcEeeEe
Confidence 733222111 1110 00001111 11232 5777888888 99999988 5555443
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.32 E-value=0.61 Score=40.20 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=84.6
Q ss_pred CeEEEeC-C--cEEEEeecCCc--ceeEEEeec---CCCccCCCCEEEEEEcCCCCCEEEEEe------CCCeEEEEECC
Q 040307 89 DIVATSG-D--SLRLWEIHDDR--TELKSLLNS---NKTSEFSSAITSFDWAGFDTRRVATCS------VDTTCVIWDID 154 (339)
Q Consensus 89 ~~la~~~-~--~i~iw~~~~~~--~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~------~d~~v~i~d~~ 154 (339)
++|+..+ . .|+|.|+.+.. .+..++++. +...+...+=+ +---| +++.++++- .-|.+.+.|-+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT-~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHT-VHCLP-DGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEE-EEE-S-S--EEEEEEEETTS-S--EEEEE-TT
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCce-eeecC-CccEEEEeccCCCCCCCCcEEEEcCc
Confidence 5666665 3 99999998542 334455543 11011111111 11224 787777752 23567788887
Q ss_pred CCeeeeeeeccC---CceeEEEec-CCcEEEEEeC--------------------CCcEEEEECCCCcceeeEEeCCCCC
Q 040307 155 REILETQLVAHD---REVYDISWG-GFNVFASVSG--------------------DCSVRVFDLRDKERSTIIYENPVQD 210 (339)
Q Consensus 155 ~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~~ 210 (339)
+.+......... .--.++-|. ..+.++|... ..++.+||+.+.+..+.+-.... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~-g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE-G 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT-E
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC-C
Confidence 776665553221 123455555 3566666542 46899999999986666554421 1
Q ss_pred CCeEEEEE--ecCCCCeEEEEe-eCCCeEEEEecCCCCC----ceEEEec-----------------CCCCeeEEEeccC
Q 040307 211 CPLLRLEW--NKADPRFMATVG-MDSNKVVVLDIRFPTN----PVVVLSK-----------------HEGSVNGISWAPL 266 (339)
Q Consensus 211 ~~v~~~~~--~p~~~~~l~~~~-~d~~~i~i~d~~~~~~----~~~~~~~-----------------~~~~v~~~~~~p~ 266 (339)
.....+.| .| +..+=++++ ...+ |..|--...+. .+..+.. -..-|+.|..|.|
T Consensus 245 ~~pLEvRflH~P-~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 245 QMPLEVRFLHDP-DANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp EEEEEEEE-SST-T--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CceEEEEecCCC-CccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 23445555 44 333333333 3333 54443311121 1111111 0234789999999
Q ss_pred CCCeEE-EEeCCCcEEEEEecCCC
Q 040307 267 YGRRLC-SVADDSRALIWEVVGPG 289 (339)
Q Consensus 267 ~~~~l~-~~~~dg~v~iwd~~~~~ 289 (339)
.. +|. ++-.+|.|+.||+....
T Consensus 323 Dr-fLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 323 DR-FLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp S--EEEEEETTTTEEEEEE-SSTT
T ss_pred CC-EEEEEcccCCcEEEEecCCCC
Confidence 85 555 45589999999999977
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.31 E-value=0.28 Score=45.84 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC-C--------Cc--e-EEE--------ecCCCCeeEEEeccCC--
Q 040307 210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP-T--------NP--V-VVL--------SKHEGSVNGISWAPLY-- 267 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~-~--------~~--~-~~~--------~~~~~~v~~~~~~p~~-- 267 (339)
...|..+..+| +|.+++..|..+ |.|..+... + +. . .++ ..+...|..+.|+|.+
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 35788999998 999999888876 666655321 0 11 1 111 1234578999999984
Q ss_pred CCeEEEEeCCCcEEEEEecCCC
Q 040307 268 GRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 268 ~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+..|+.-..|+++++||+....
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 3588888899999999998655
No 408
>PHA03098 kelch-like protein; Provisional
Probab=96.20 E-value=0.61 Score=42.51 Aligned_cols=185 Identities=10% Similarity=0.007 Sum_probs=90.0
Q ss_pred CeEEEeC-C-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCC
Q 040307 89 DIVATSG-D-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDR 155 (339)
Q Consensus 89 ~~la~~~-~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~ 155 (339)
.+++.|| + .+..||..+.++.....+.... ... +++.. ++.+++.||.+ ..+..||..+
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R-----~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR-----KNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc-----ccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCCC
Confidence 5677665 1 4677888777654333322111 112 22222 67788888865 3577788876
Q ss_pred Ceee--eeeeccCCceeEEEecCCcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 156 EILE--TQLVAHDREVYDISWGGFNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 156 ~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
.+-. ..+. +...-.+++..++.+++.||.+ ..+..||+.+.+-... ...+..... .+++.. ++.+++
T Consensus 368 ~~W~~~~~lp-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~-~~~~~~--~~~iyv 442 (534)
T PHA03098 368 SKWREEPPLI-FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPLPISHYG-GCAIYH--DGKIYV 442 (534)
T ss_pred CceeeCCCcC-cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCCCccccC-ceEEEE--CCEEEE
Confidence 5411 1111 1111122233367777877742 3578899887652211 111111111 223332 566777
Q ss_pred EEeeCCC-------eEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 228 TVGMDSN-------KVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 228 ~~~~d~~-------~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
.|+.+.. .+.+||..+.. ..+..+.........+.+ ++ ++++.|+.+ +.+.+||.....
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 7765321 27888876522 111111111111112222 44 577777654 467777776644
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.14 Score=48.70 Aligned_cols=145 Identities=17% Similarity=0.113 Sum_probs=90.3
Q ss_pred EEEecCCcE--EEEEeCCCcEEEEECCCCcceeeE----E----eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 171 DISWGGFNV--FASVSGDCSVRVFDLRDKERSTII----Y----ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 171 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~----~----~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
-+++++... ++..+.+-.|..||+++-...... + ..........++.|+|.-....++...|.. |++..
T Consensus 106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l~V~~ 184 (1405)
T KOG3630|consen 106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-LRVKS 184 (1405)
T ss_pred EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-hhhhh
Confidence 334445333 333344557899999865422100 0 111123456788999866666777788887 88887
Q ss_pred cCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC
Q 040307 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP 320 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 320 (339)
+.........+. -...+++++|+|.| +.++.|...|++.-|......++.. +..-......|.+|+|-.
T Consensus 185 ~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~i---------p~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 185 TKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEI---------PEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeecccceeecc---------cCCCcCCCcceeEEEEec
Confidence 765443344433 24578999999999 7999999999998887665531000 111111256899999988
Q ss_pred CCCceEE
Q 040307 321 LELDWIA 327 (339)
Q Consensus 321 ~~~~l~~ 327 (339)
...+++.
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8766553
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.09 E-value=0.022 Score=31.19 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCeEEEEEecCCC--CeEEEEeeCCCeEEEEecCC
Q 040307 211 CPLLRLEWNKADP--RFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 211 ~~v~~~~~~p~~~--~~l~~~~~d~~~i~i~d~~~ 243 (339)
+.+.++.|+|..+ .+|+.+-..+. +.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 3688999998666 68888777777 99999995
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.06 E-value=1 Score=40.24 Aligned_cols=125 Identities=18% Similarity=0.348 Sum_probs=77.6
Q ss_pred eeeeeeccCCeeEEEeeecCC--cccEEEEeeeccccCCeEEEEecCCCC---CcccceeeEeecCCC--CceEEEEcCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHD--RKSRLAVGSFLEDYSNKIELVNFNPET---SDFSADNRLIFDHPY--TPTNIAFFPS 82 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~--~~~~la~g~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~~--~v~~l~~~~~ 82 (339)
.+-.|+| |..+.|.|-.. ...+||+-. ...|.||.+.... .+.......+....- -.....|+|.
T Consensus 52 viGqFEh---V~GlsW~P~~~~~~paLLAVQH-----kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk 123 (671)
T PF15390_consen 52 VIGQFEH---VHGLSWAPPCTADTPALLAVQH-----KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK 123 (671)
T ss_pred Eeeccce---eeeeeecCcccCCCCceEEEec-----cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC
Confidence 3444444 88899998632 235777766 8999999987433 233322222222222 2356789999
Q ss_pred CCCCCCCeEEEeC--CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECC
Q 040307 83 EETLNPDIVATSG--DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDID 154 (339)
Q Consensus 83 ~~~~~~~~la~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~ 154 (339)
. .+|+.-. |.-.++++..+..+....++.. +-|.|.+|.+ ||+.|+.+- ..=.-++||-.
T Consensus 124 ~-----~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~------G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 124 K-----AILTVLTARDVSVLPSVHCDSSRVKADIKTS------GLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred C-----ceEEEEecCceeEeeeeeeCCceEEEeccCC------ceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence 9 7887755 3435566665554455555543 7899999997 887766653 33355688853
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.99 E-value=0.71 Score=42.19 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=69.9
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCceeEEEec---CCcEEEEEeCCCcEEEEECC-----
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVYDISWG---GFNVFASVSGDCSVRVFDLR----- 195 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~d~~i~i~d~~----- 195 (339)
.+.-+.-++ -++.-++-+....+.|||.+.+.....-. ...+.|.++.|. +++.+++.|..+.|.+|--.
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444443 44444444445679999998887443322 346789999998 58888888899999998542
Q ss_pred CCc----ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 196 DKE----RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 196 ~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
... ....+.-......+|.+..|.+ +|.+++.++ + ++.|+|-..
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG-N--qlfv~dk~~ 157 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG-N--QLFVFDKWL 157 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC-C--EEEEECCCc
Confidence 111 1111111112235788999986 666655433 2 288987543
No 413
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.67 Score=37.53 Aligned_cols=280 Identities=11% Similarity=0.070 Sum_probs=149.1
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
+......+-+..+.++.+ +...+. .+.-++|+|+......... .. ....+--.++..+- ++
T Consensus 80 ~~~i~~~~l~~Dv~vse~-----yvyvad----~ssGL~IvDIS~P~sP~~~--~~-lnt~gyaygv~vsG-------n~ 140 (370)
T COG5276 80 LSVINARDLFADVRVSEE-----YVYVAD----WSSGLRIVDISTPDSPTLI--GF-LNTDGYAYGVYVSG-------NY 140 (370)
T ss_pred EEEEehhhhhheeEeccc-----EEEEEc----CCCceEEEeccCCCCccee--cc-ccCCceEEEEEecC-------CE
Confidence 334445667778888766 666666 5788999777644332221 11 22234445555544 33
Q ss_pred EEEeC-C-cEEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeec
Q 040307 91 VATSG-D-SLRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVA 164 (339)
Q Consensus 91 la~~~-~-~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~ 164 (339)
.-.+. + -+.+.|+.+.+. .......... .....++.| |++-..+..|+-+.+-|+.... .+... .
T Consensus 141 aYVadlddgfLivdvsdpssP~lagrya~~~-----~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n 211 (370)
T COG5276 141 AYVADLDDGFLIVDVSDPSSPQLAGRYALPG-----GDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-N 211 (370)
T ss_pred EEEeeccCcEEEEECCCCCCceeeeeeccCC-----CCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-e
Confidence 33333 4 788888877652 2233333332 334456664 5666777789999999986654 22222 2
Q ss_pred cCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 165 HDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 165 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
....+.++..++..-+++. .+.-+.+-|....+.+..+..- ....+.++.--|-.+++......+.. +.+-|..++
T Consensus 212 ~g~g~~sv~vsdnr~y~vv-y~egvlivd~s~~ssp~~~gsy--et~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp 287 (370)
T COG5276 212 TGPGTYSVSVSDNRAYLVV-YDEGVLIVDVSGPSSPTVFGSY--ETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNP 287 (370)
T ss_pred cCCceEEEEecCCeeEEEE-cccceEEEecCCCCCceEeecc--ccCCcccccceecccceeeeeccccC-ceeEeccCC
Confidence 2336788888854444444 3445778888887755554332 22233333211236677777777777 888888876
Q ss_pred CCceEE--EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307 245 TNPVVV--LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 245 ~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 322 (339)
..|... +......-..+..+- .++..+..+ ...+-+....+. +-...+-...+.+.+.+-+.
T Consensus 288 ~spfl~ss~~t~g~~a~gi~ay~---~y~yiadkn-~g~vV~~s~~s~------------m~~~~g~~ti~~s~~v~~~~ 351 (370)
T COG5276 288 PSPFLSSSLDTAGYQAAGIRAYG---NYNYIADKN-TGAVVDASPPSM------------MDKRPGRPTIGQSCDVSVDT 351 (370)
T ss_pred CCCchhccccCCCccccceEEec---CeeEeccCC-ceEEEeCCChhh------------cccccCcceEeeecceEEEe
Confidence 554321 111111333444332 244444444 455556555441 00111111122233333344
Q ss_pred CceEEEecCCeEEEEe
Q 040307 323 LDWIAIAFVNKLQLLK 338 (339)
Q Consensus 323 ~~l~~~~~d~~v~~w~ 338 (339)
+.+...-.++.+.+|+
T Consensus 352 q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 352 QIIYSTDYNGGLSIIE 367 (370)
T ss_pred eEEEEeecCCCEEEEE
Confidence 4455677788888886
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.67 Score=37.38 Aligned_cols=249 Identities=12% Similarity=0.112 Sum_probs=129.5
Q ss_pred CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeE-EEEecCCCCCccccee---eEeecCCCCceEEEEcC
Q 040307 6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKI-ELVNFNPETSDFSADN---RLIFDHPYTPTNIAFFP 81 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i-~i~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~ 81 (339)
+.+|.+.....+..-..|+|+|. ....++.+- ..|+. .++|.+.......... ..-++|. .|||
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~--~~ravafAR----rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~ 123 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPA--LPRAVAFAR----RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSP 123 (366)
T ss_pred cCCceeeeeecccccCCeecCCC--CcceEEEEe----cCCceEEEECCCCCcCcEEEecccCceeeccc------ccCC
Confidence 45677777778888889999998 355677776 45554 5644443322221100 0013443 6999
Q ss_pred CCCCCCCCeEEEe-CC------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC----------
Q 040307 82 SEETLNPDIVATS-GD------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---------- 144 (339)
Q Consensus 82 ~~~~~~~~~la~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------- 144 (339)
|+ .+|... .| .|-|||.... +..+..+..|. -.-..+.|.+ |++.++.+.-
T Consensus 124 dG-----~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~G-----iGpHev~lm~-DGrtlvvanGGIethpdfgR 191 (366)
T COG3490 124 DG-----RLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHG-----IGPHEVTLMA-DGRTLVVANGGIETHPDFGR 191 (366)
T ss_pred CC-----cEEEeecCCCCCCCceEEEEecccc-cceecccccCC-----cCcceeEEec-CCcEEEEeCCceecccccCc
Confidence 99 666554 22 7999999843 44566666665 4455788887 9998887642
Q ss_pred --------CCeEEEEECCCCeeeee--ee--ccCCceeEEEec-CCcEEEEEeCCCc-----EEEEECCCCcceeeEEeC
Q 040307 145 --------DTTCVIWDIDREILETQ--LV--AHDREVYDISWG-GFNVFASVSGDCS-----VRVFDLRDKERSTIIYEN 206 (339)
Q Consensus 145 --------d~~v~i~d~~~~~~~~~--~~--~~~~~v~~~~~~-~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~ 206 (339)
.-++-+.|..+++.+.+ +. .+.-.|..++.. ++..++-+-..|. -.+=-.+.++. ......
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~-l~~~~~ 270 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP-LEFLDL 270 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc-CcccCC
Confidence 11222333333432222 11 223345556555 3333333222111 00001111111 111111
Q ss_pred CC-----CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEE
Q 040307 207 PV-----QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRAL 281 (339)
Q Consensus 207 ~~-----~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 281 (339)
+. -...|-+++.+- +..+++..+-.|+...+||..+ +..+.... -.....++-... =++..+.+|.+.
T Consensus 271 pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~t-G~vv~~a~--l~daaGva~~~~---gf~vssg~G~~~ 343 (366)
T COG3490 271 PEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAAT-GAVVSEAA--LPDAAGVAAAKG---GFAVSSGQGRII 343 (366)
T ss_pred CHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCC-CcEEeccc--ccccccceeccC---ceEEecCCceEE
Confidence 00 113566788875 5556666666666689999987 43332211 112333443333 366666788888
Q ss_pred EEEec
Q 040307 282 IWEVV 286 (339)
Q Consensus 282 iwd~~ 286 (339)
++.-.
T Consensus 344 ~~s~~ 348 (366)
T COG3490 344 FYSRA 348 (366)
T ss_pred ecccc
Confidence 87433
No 415
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.92 E-value=0.69 Score=37.18 Aligned_cols=195 Identities=9% Similarity=0.034 Sum_probs=107.7
Q ss_pred ceeeeeeccCCe--eEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307 9 PGVHTYMAQWPI--STVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 9 ~~~~~~~~~~~v--~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
+.+.++.|.... -.+.|..+ +.++-+.+. -....|+. ++..+++... .......----.+....+.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~---g~LyESTG~--yG~S~l~~--~d~~tg~~~~--~~~l~~~~FgEGit~~~d~--- 101 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDD---GTLYESTGL--YGQSSLRK--VDLETGKVLQ--SVPLPPRYFGEGITILGDK--- 101 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEET---TEEEEEECS--TTEEEEEE--EETTTSSEEE--EEE-TTT--EEEEEEETTE---
T ss_pred EEEEECCCCCcccCccEEecCC---CEEEEeCCC--CCcEEEEE--EECCCCcEEE--EEECCccccceeEEEECCE---
Confidence 456666675443 35667666 665555441 02335666 5555555544 2222222223344554443
Q ss_pred CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA 164 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 164 (339)
+..-.- + ...+||.++-+ .+.++.-. ..=..++. +++.|+.+.....++.+|.++.+....+.-
T Consensus 102 ---l~qLTWk~~~~f~yd~~tl~--~~~~~~y~------~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 102 ---LYQLTWKEGTGFVYDPNTLK--KIGTFPYP------GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp ---EEEEESSSSEEEEEETTTTE--EEEEEE-S------SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred ---EEEEEecCCeEEEEccccce--EEEEEecC------CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEE
Confidence 333333 3 88999998765 55555432 34456663 667777777788999999988776666542
Q ss_pred c--C---CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC---------C---CCCCCeEEEEEecCCCCeEE
Q 040307 165 H--D---REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN---------P---VQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 165 ~--~---~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------~---~~~~~v~~~~~~p~~~~~l~ 227 (339)
. . ..++.+.|.++.+.|-.=....|...|..+++....+-.. . ....-.+.|||+|..+.+++
T Consensus 168 ~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 168 TDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred EECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 2 1 2466788887877777777778888898888754433110 0 01345789999996666666
Q ss_pred EE
Q 040307 228 TV 229 (339)
Q Consensus 228 ~~ 229 (339)
+|
T Consensus 248 TG 249 (264)
T PF05096_consen 248 TG 249 (264)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=95.83 E-value=1.3 Score=39.72 Aligned_cols=139 Identities=10% Similarity=-0.032 Sum_probs=72.6
Q ss_pred CeEEEeCC----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCeeee-
Q 040307 89 DIVATSGD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT---TCVIWDIDREILET- 160 (339)
Q Consensus 89 ~~la~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~- 160 (339)
.+.+.||. .+..|+..++++.....+.... ... +++.. +++..+.|+.++ .+..||.++.+=..
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r-----~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR-----CNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCCCCCC-----ccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 78888772 6888888777654444443211 111 22222 678888887654 46788887654111
Q ss_pred -eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----e
Q 040307 161 -QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----K 235 (339)
Q Consensus 161 -~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~ 235 (339)
.+...... .+++..++.+.+.|+ .+.+||.++.+-.. ....+...... +++.. ++++.++|+.++. .
T Consensus 392 ~~m~~~r~~-~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~-~~~m~~~r~~~-~~~v~--~~~IYviGG~~~~~~~~~ 463 (480)
T PHA02790 392 PSTYYPHYK-SCALVFGRRLFLVGR---NAEFYCESSNTWTL-IDDPIYPRDNP-ELIIV--DNKLLLIGGFYRGSYIDT 463 (480)
T ss_pred CCCCCcccc-ceEEEECCEEEEECC---ceEEecCCCCcEeE-cCCCCCCcccc-EEEEE--CCEEEEECCcCCCcccce
Confidence 11111111 122223566777664 57789987765222 11111111222 33332 6778888876521 2
Q ss_pred EEEEecCC
Q 040307 236 VVVLDIRF 243 (339)
Q Consensus 236 i~i~d~~~ 243 (339)
+..||...
T Consensus 464 ve~Yd~~~ 471 (480)
T PHA02790 464 IEVYNNRT 471 (480)
T ss_pred EEEEECCC
Confidence 66777654
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.82 E-value=0.065 Score=29.36 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCC
Q 040307 124 SAITSFDWAGFDT--RRVATCSVDTTCVIWDIDR 155 (339)
Q Consensus 124 ~~i~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~ 155 (339)
++|.++.|+|..+ ++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998555 6888888889999999985
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=1.1 Score=38.69 Aligned_cols=155 Identities=10% Similarity=0.063 Sum_probs=95.8
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee-
Q 040307 127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST- 201 (339)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~- 201 (339)
+.+-|. |.+..+.+...|.+.-|-..... ++..-....++|.++.|+ |.+.+|.--.+..|.+++....+...
T Consensus 26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 345554 44444444445666666553322 111112345699999999 88899999999999999874433211
Q ss_pred eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcE
Q 040307 202 IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRA 280 (339)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v 280 (339)
...+.......|....|. +..-+|.....| +.+|-+......++..+.|+..|+=..|.++..-.|++.+ ..+.+
T Consensus 104 ~~~~ck~k~~~IlGF~W~--~s~e~A~i~~~G--~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWT--SSTEIAFITDQG--IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred HHHHhccCcceeEEEEEe--cCeeEEEEecCC--eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 111222234568899998 346677766666 8888877656667777888888999999998743333333 33444
Q ss_pred EEEEecC
Q 040307 281 LIWEVVG 287 (339)
Q Consensus 281 ~iwd~~~ 287 (339)
.=+.++.
T Consensus 180 npf~~~~ 186 (657)
T KOG2377|consen 180 NPFHFRA 186 (657)
T ss_pred ccEEEee
Confidence 4444443
No 419
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.73 E-value=2 Score=41.07 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=103.5
Q ss_pred cCCCCceEEEEc---CCCCCCCCCeEEEeCC-cEEEEeec------CC-------cceeEEEeecCCCccCCCCEEEEEE
Q 040307 69 DHPYTPTNIAFF---PSEETLNPDIVATSGD-SLRLWEIH------DD-------RTELKSLLNSNKTSEFSSAITSFDW 131 (339)
Q Consensus 69 ~~~~~v~~l~~~---~~~~~~~~~~la~~~~-~i~iw~~~------~~-------~~~~~~~~~~~~~~~~~~~i~~~~~ 131 (339)
....+|..|+|. ... ...+++|++=.. .+.|+... .. ...++..+..+...+ .+..+++|
T Consensus 77 ~~~~PI~qI~fa~~~~~~-~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg--~~~aDv~F 153 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESF-DEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGG--FPHADVAF 153 (765)
T ss_pred CCCCCeeEEEeccccccc-CCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCC--CccceEEe
Confidence 567789999998 211 012258888776 77777721 11 123444554333222 46779999
Q ss_pred cCCCCCEEEEEeCCCeEEEEECCCCe-----eeeeeeccCC----------ceeEEEec-CCcEEEEEeCCCcEEEEECC
Q 040307 132 AGFDTRRVATCSVDTTCVIWDIDREI-----LETQLVAHDR----------EVYDISWG-GFNVFASVSGDCSVRVFDLR 195 (339)
Q Consensus 132 ~~~~~~~l~~~~~d~~v~i~d~~~~~-----~~~~~~~~~~----------~v~~~~~~-~~~~l~~~~~d~~i~i~d~~ 195 (339)
+|.+...||.-...|.-.||++.... .+.....+.+ .-..+.|. +.+.|+.++. ..+.++|+.
T Consensus 154 nP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 154 NPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred ccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence 99888999999999999999992111 1111111112 22367787 5566666654 578999999
Q ss_pred CCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 196 DKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
+......+.. ......|..+.-+|.+..+++.-+. .. |...|+..
T Consensus 233 ~~~~~~~l~~-~~~~~~IlDv~~~~~~~~~~FiLTs-~e-iiw~~~~~ 277 (765)
T PF10214_consen 233 SNWQTEYLVT-AKTWSWILDVKRSPDNPSHVFILTS-KE-IIWLDVKS 277 (765)
T ss_pred CCCccchhcc-CCChhheeeEEecCCccceEEEEec-Ce-EEEEEccC
Confidence 8875332222 1244678999988854455554443 33 88888876
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.34 Score=46.35 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=92.7
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEe--C-C-cEEEEeecCCcc---eeEEEeecCCCc-cCCCCEEEEEEcCCCCCEEEE
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATS--G-D-SLRLWEIHDDRT---ELKSLLNSNKTS-EFSSAITSFDWAGFDTRRVAT 141 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~--~-~-~i~iw~~~~~~~---~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~ 141 (339)
..-++..+..++|. .+.++. + + .|..||+.+-.. +....|..|... ....-..++.|+|.-....+.
T Consensus 99 k~~pi~~~v~~~D~-----t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDA-----TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred ccccceEEEeccCC-----ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh
Confidence 34456667777776 444433 2 3 899999876431 112222222210 011334578899865667788
Q ss_pred EeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEE
Q 040307 142 CSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEW 218 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~ 218 (339)
+..|+.|++..+.... .+..+ .....+++++|+ .|..++.|-..|++.-|...-..... +...+ .....|.++.|
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-IPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeec-ccCCCcCCCcceeEEEE
Confidence 8889999988775433 22233 345678999999 69999999999999988765442221 12221 12478999999
Q ss_pred ecCCCCeEEE
Q 040307 219 NKADPRFMAT 228 (339)
Q Consensus 219 ~p~~~~~l~~ 228 (339)
-. ...++++
T Consensus 252 l~-t~eflvv 260 (1405)
T KOG3630|consen 252 LS-TQEFLVV 260 (1405)
T ss_pred ec-ceeEEEE
Confidence 85 4455544
No 421
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.52 E-value=0.42 Score=41.70 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=91.1
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC--------CcEEEEEeCCCcEEEEECCCCcceeeEEe
Q 040307 135 DTRRVA-TCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG--------FNVFASVSGDCSVRVFDLRDKERSTIIYE 205 (339)
Q Consensus 135 ~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 205 (339)
+.++|. .|+....++--|++.|+.+.....|... -+.|.| ...-+.|-.+..|.-.|.|-........+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444444 4556677888899999988888766654 356653 12233444566676677775542222222
Q ss_pred CC--CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307 206 NP--VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 206 ~~--~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw 283 (339)
.. ..+....+..- ....++|+++..|. |++||--. ......+.+-...|..|..+.+|..+|+|| ...+.+-
T Consensus 556 sKdY~tKn~Fss~~t--TesGyIa~as~kGD-irLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~ 629 (776)
T COG5167 556 SKDYKTKNKFSSGMT--TESGYIAAASRKGD-IRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLT 629 (776)
T ss_pred ehhcccccccccccc--ccCceEEEecCCCc-eeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEE
Confidence 10 01122222222 25679999999999 99999543 334455667778999999999995444444 3577788
Q ss_pred EecCCC
Q 040307 284 EVVGPG 289 (339)
Q Consensus 284 d~~~~~ 289 (339)
|++-..
T Consensus 630 d~~ik~ 635 (776)
T COG5167 630 DVPIKY 635 (776)
T ss_pred eccccc
Confidence 876554
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.50 E-value=1.9 Score=40.06 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=72.5
Q ss_pred ceeEEEec---CCcEEEEEeCCCcEEEEECCCC-----------c--------ceeeEEeCCCCCCCeEEEEEe--cCCC
Q 040307 168 EVYDISWG---GFNVFASVSGDCSVRVFDLRDK-----------E--------RSTIIYENPVQDCPLLRLEWN--KADP 223 (339)
Q Consensus 168 ~v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~-----------~--------~~~~~~~~~~~~~~v~~~~~~--p~~~ 223 (339)
.|+.|... ....|+.|..||.|.+|.+..- . .+..... -...++.++++ . ..
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~-~~ 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYK-KS 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecC-cc
Confidence 45666555 4778999999999999976211 0 0111111 23578889987 4 56
Q ss_pred CeEEEEeeCCCeEEEEecCCC--CCceEEEecCCCCeeEEEeccCC--CC---eEEEEeCCCcEEEEEec
Q 040307 224 RFMATVGMDSNKVVVLDIRFP--TNPVVVLSKHEGSVNGISWAPLY--GR---RLCSVADDSRALIWEVV 286 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~~~~~dg~v~iwd~~ 286 (339)
++||+++.... |.||-.... ......-..|...|.+|+|-++. +. .|++++-.|.+.+|++.
T Consensus 178 rlIAVSsNs~~-VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 178 RLIAVSSNSQE-VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEecCCce-EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 67777666665 777755431 11111111256678999998764 22 77888899999999984
No 423
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.47 E-value=1.1 Score=36.31 Aligned_cols=152 Identities=17% Similarity=0.106 Sum_probs=84.9
Q ss_pred CEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEE-CCCCcc
Q 040307 125 AITSFDWAGFDTRRVATCS---VDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFD-LRDKER 199 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d-~~~~~~ 199 (339)
.+...++++ +++.++... ....++++.. +....... ....+..-.|+ ++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 678899998 888777655 3345555554 33222221 22367778888 565555555566666663 333332
Q ss_pred eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC--CCeEEEEecCCC--C------CceEEEecCCCCeeEEEeccCCCC
Q 040307 200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMD--SNKVVVLDIRFP--T------NPVVVLSKHEGSVNGISWAPLYGR 269 (339)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--~~~i~i~d~~~~--~------~~~~~~~~~~~~v~~~~~~p~~~~ 269 (339)
.......+.....|..+.++| +|..++....+ +.+|.+--+... + .+..........+..++|.+++.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~- 178 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST- 178 (253)
T ss_pred eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-
Confidence 222222211222899999999 77777665532 123666544321 1 12222223346889999999984
Q ss_pred eEEEEeC-CCcEEE
Q 040307 270 RLCSVAD-DSRALI 282 (339)
Q Consensus 270 ~l~~~~~-dg~v~i 282 (339)
+++.+.. ++.+..
T Consensus 179 L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 179 LVVLGRSAGGPVVR 192 (253)
T ss_pred EEEEeCCCCCceeE
Confidence 5555543 343444
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=95.43 E-value=1.9 Score=38.77 Aligned_cols=181 Identities=7% Similarity=-0.165 Sum_probs=88.5
Q ss_pred CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCe--
Q 040307 89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--TTCVIWDIDREI-- 157 (339)
Q Consensus 89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~-- 157 (339)
.+++.||. .+..||..++++.....+.... ... +++.. ++.+.+.|+.+ ..+..||..+++
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r-----~~~-~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~ 344 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR-----LYA-SGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWV 344 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh-----hcc-eEEEE--CCEEEEECCcCCCCceEEEECCCCeEE
Confidence 56677761 5667888777644444433221 111 22222 67888888764 357788876553
Q ss_pred eeeeeeccCCceeEEEecCCcEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307 158 LETQLVAHDREVYDISWGGFNVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN 234 (339)
Q Consensus 158 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 234 (339)
.+..+. ....-.+++..++.+.+.||.++ .+..||.++.+-... ...+...... +++- -++.+.+.|+ .
T Consensus 345 ~~~~l~-~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~-~~~~--~~~~IYv~GG---~ 416 (480)
T PHA02790 345 NMPSLL-KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKS-CALV--FGRRLFLVGR---N 416 (480)
T ss_pred ECCCCC-CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccc-eEEE--ECCEEEEECC---c
Confidence 111221 11111223333688888888654 467888877652211 1111111111 2222 2566666663 4
Q ss_pred eEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 235 KVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 235 ~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
+.+||.++.. ..+..+....... +++. -++ ++.+.|+.+ ..+..||....+
T Consensus 417 -~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~-~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 417 -AEFYCESSNTWTLIDDPIYPRDNP-ELII-VDN-KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred -eEEecCCCCcEeEcCCCCCCcccc-EEEE-ECC-EEEEECCcCCCcccceEEEEECCCCe
Confidence 7788876522 1111111111111 2222 244 577777754 346666666543
No 425
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.19 E-value=0.0087 Score=51.20 Aligned_cols=240 Identities=12% Similarity=0.128 Sum_probs=134.4
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC---C
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG---D 96 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---~ 96 (339)
.....|-|. +.-++.++ .+..+.. +|..+.... +...++....++|..++ +.++... +
T Consensus 37 pi~~~w~~e---~~nlavac----a~tiv~~--YD~agq~~l-----e~n~tg~aldm~wDkeg-----dvlavlAek~~ 97 (615)
T KOG2247|consen 37 PIIHRWRPE---GHNLAVAC----ANTIVIY--YDKAGQVIL-----ELNPTGKALDMAWDKEG-----DVLAVLAEKTG 97 (615)
T ss_pred cceeeEecC---CCceehhh----hhhHHHh--hhhhcceec-----ccCCchhHhhhhhcccc-----chhhhhhhcCC
Confidence 345577787 55577777 4777777 444443333 24566777888999888 4444433 4
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG 176 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 176 (339)
.+.+|++++.....+..-..+. .. -+.|++ ....++.+...|.+.|++..+.+.+.....|...++++++..
T Consensus 98 piylwd~n~eytqqLE~gg~~s-----~s--ll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 98 PIYLWDVNSEYTQQLESGGTSS-----KS--LLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred CeeechhhhhhHHHHhccCcch-----HH--HHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 9999999876422221111111 22 267887 778888888999999999888776666645889999999997
Q ss_pred CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE---EEecCCCCeEEEEeeCCCeEEEEecCCCCCce-EEEe
Q 040307 177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL---EWNKADPRFMATVGMDSNKVVVLDIRFPTNPV-VVLS 252 (339)
Q Consensus 177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~---~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~-~~~~ 252 (339)
.++.+.++.|..+.+-...+...................+ .|.. .+..+...-..+..+..-......++. ..++
T Consensus 170 Ed~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~k-age~m~sVvsgKkhl~yak~nE~D~pval~fq 248 (615)
T KOG2247|consen 170 EDYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGK-AGETMVSVVSGKKHLMYAKYNELDEPVALQFQ 248 (615)
T ss_pred cceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeecccc-ccceeeeeeecHHHHHHHhhcCCCCccceEee
Confidence 6777777777655543322221111100000000111111 2332 334443322222101111111111221 2555
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
...+.+.++.|--|| .|.-+..-|.|..-...+.+
T Consensus 249 ~~~gni~cyrwylDg--~i~igf~ag~iV~iS~h~ae 283 (615)
T KOG2247|consen 249 EKYGNIHCYRWYLDG--YILIGFDAGYIVSISAHNAE 283 (615)
T ss_pred ecCCceeEEEEeccc--cccccccceeEEEEeccchH
Confidence 556788999999887 45555555555555544433
No 426
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.16 E-value=2.6 Score=39.13 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=70.3
Q ss_pred CCCeEEEEeeCCCeEEEEecCCC-------------------CCceEEEecCCCCeeEEEec--cCCCCeEEEEeCCCcE
Q 040307 222 DPRFMATVGMDSNKVVVLDIRFP-------------------TNPVVVLSKHEGSVNGISWA--PLYGRRLCSVADDSRA 280 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~~-------------------~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~v 280 (339)
+...|+++.+||. |.+|.+..- -+|...+.. ...+++++++ ... ++||+++....|
T Consensus 113 ~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~-rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKS-RLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcc-eEEEEecCCceE
Confidence 4568888888888 999965210 013333332 4478999998 666 688888888889
Q ss_pred EEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC---C---ceEEEecCCeEEEEeC
Q 040307 281 LIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE---L---DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~---~---~l~~~~~d~~v~~w~v 339 (339)
.||-+.....+. .......+...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~---------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERF---------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEecccccc---------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 998777643110 011122366779999998865 1 3556778888888764
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.97 E-value=1.3 Score=34.32 Aligned_cols=102 Identities=10% Similarity=0.191 Sum_probs=61.9
Q ss_pred cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-----C---cEEEE---eecCCcceeEE
Q 040307 44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-----D---SLRLW---EIHDDRTELKS 112 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-----~---~i~iw---~~~~~~~~~~~ 112 (339)
..+.|.+|++..+...... .+..-+.|..+.++..| ++|++-- + .+|+| +....+..++.
T Consensus 36 ~g~~Vev~~l~~~~~~~~~----~F~Tv~~V~~l~y~~~G-----DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 36 SGCKVEVYDLEQEECPLLC----TFSTVGRVLQLVYSEAG-----DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred CCCEEEEEEcccCCCceeE----EEcchhheeEEEecccc-----ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 3689999988854444444 46677899999999999 8999853 1 45654 32211111111
Q ss_pred -EeecCCCc----------------cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 040307 113 -LLNSNKTS----------------EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE 156 (339)
Q Consensus 113 -~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 156 (339)
.+-||... ....++.+++-.|..|++++.+ ++.+.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 22232200 0124667788888677766654 468888877543
No 428
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.93 Score=44.27 Aligned_cols=138 Identities=10% Similarity=0.153 Sum_probs=79.5
Q ss_pred cCCeEEEEecCCCCCcccceeeEeecCCCCceEEE--------EcCCCCCCCCCeEEEeCC-cEEEEeecCCcc------
Q 040307 44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIA--------FFPSEETLNPDIVATSGD-SLRLWEIHDDRT------ 108 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~--------~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~------ 108 (339)
-|+.+.+|+++.++..... -+....|..+. |.|.-+ .+|+.+.- .|.|+-+.-.+.
T Consensus 97 iDn~L~lWny~~~~e~~~~-----d~~shtIl~V~LvkPkpgvFv~~Iq----hlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEY-----DGLSHTILKVGLVKPKPGVFVPEIQ----HLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eCCeEEEEEcCCCCccccc-----cchhhhheeeeeecCCCCcchhhhh----eeEEecccceEEEEEEEeccccCcccc
Confidence 3899999999884433322 23334454444 344432 56666665 666665543320
Q ss_pred -eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE--EEECCCC---e-----------------eeeeee-c
Q 040307 109 -ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV--IWDIDRE---I-----------------LETQLV-A 164 (339)
Q Consensus 109 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~--i~d~~~~---~-----------------~~~~~~-~ 164 (339)
.....+.... ..|+++... .+|+.|++ +.||.|+ +|....+ + .+..+. .
T Consensus 168 f~~~~~i~~dg-----~~V~~I~~t-~nGRIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 168 FNTSFKISVDG-----VSVNCITYT-ENGRIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred cccceeeecCC-----ceEEEEEec-cCCcEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 0011111112 578888855 36666655 4566544 2222221 0 111222 4
Q ss_pred cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCC
Q 040307 165 HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDK 197 (339)
Q Consensus 165 ~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~ 197 (339)
+.++|..+... ..+++.+-+..++|.+||+...
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 56789999998 5778888899999999999874
No 429
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.83 E-value=0.95 Score=32.08 Aligned_cols=122 Identities=9% Similarity=0.032 Sum_probs=68.5
Q ss_pred EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccc--ceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEE
Q 040307 24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS--ADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRL 100 (339)
Q Consensus 24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~i 100 (339)
+|... ...|++++ ..|+|.|++-........ ......+.-...|++|+--+-......+.|+.|+. .+..
T Consensus 5 kfDG~---~pcL~~aT----~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 5 KFDGV---HPCLACAT----TGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred EeCCC---ceeEEEEe----cCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence 45555 56788888 689999965443221110 00011245667788886544321112389999997 9999
Q ss_pred EeecCCcceeEEEeecCCCccCCCCEEEEEEc---CCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWA---GFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
||+....-...+.+. ..|+++.+- .....+++. +-+..|.-||.+-.+...+
T Consensus 78 YDV~~N~d~Fyke~~--------DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 78 YDVENNSDLFYKEVP--------DGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEcccCchhhhhhCc--------cceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEE
Confidence 999887522222222 355565552 212344444 4457777777655554443
No 430
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.70 E-value=4.1 Score=39.23 Aligned_cols=171 Identities=14% Similarity=0.114 Sum_probs=97.8
Q ss_pred Cceeeeeecc-----CCeeEEEeeecCCcccEEEEeee-------ccccCCeEEEEecCCCCCcccceeeEeecCCCCce
Q 040307 8 KPGVHTYMAQ-----WPISTVAWSVRHDRKSRLAVGSF-------LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT 75 (339)
Q Consensus 8 ~~~~~~~~~~-----~~v~~i~~sp~~~~~~~la~g~~-------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (339)
++.+...++. ..+.++.|+.... ..++++|.. ..-.+|.++.|++-..+..+.. .....-.+.|
T Consensus 863 ~~~~~~~~l~~ne~a~~v~~~~fs~~~~-~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel--lh~T~~~~~v- 938 (1205)
T KOG1898|consen 863 GKIICLVELGQNEAAFSVCAVDFSSSEY-QPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL--LHKTEIPGPV- 938 (1205)
T ss_pred CceEEEEeecCCcchhheeeeeeccCCC-ceEEEEEeeccccccccccCCCceEEEEEEecCceeee--eeccCCCccc-
Confidence 4444555543 3467777776622 235666653 1113455777776666554443 1112223444
Q ss_pred EEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE--EEC
Q 040307 76 NIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI--WDI 153 (339)
Q Consensus 76 ~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i--~d~ 153 (339)
.+.+|... .+|+..++.+++|++...+......++.-. ..|+.+.+. +..++.|...-.|.. |+.
T Consensus 939 -~Ai~~f~~----~~LagvG~~l~~YdlG~K~lLRk~e~k~~p-----~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 939 -GAICPFQG----RVLAGVGRFLRLYDLGKKKLLRKCELKFIP-----NRISSIQTY---GARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred -eEEeccCC----EEEEecccEEEEeeCChHHHHhhhhhccCc-----eEEEEEeec---ceEEEEeeccceEEEEEEec
Confidence 44567662 455555669999999887632222333222 678888874 577888877666664 444
Q ss_pred CCCeeeeeeec--cCCceeEEEecCCcEEEEEeCCCcEEEEECCC
Q 040307 154 DREILETQLVA--HDREVYDISWGGFNVFASVSGDCSVRVFDLRD 196 (339)
Q Consensus 154 ~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~ 196 (339)
+.. .+..+.. -...|+++.+-+.+.++.+..-|.+.+-.+..
T Consensus 1006 ~~n-~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1006 EDN-QLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCC-eEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence 333 3334422 23457777776777888888878777665543
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=1.5 Score=33.72 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=90.5
Q ss_pred CeEEEeC--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307 89 DIVATSG--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA 164 (339)
Q Consensus 89 ~~la~~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 164 (339)
.++.+.+ + .|++|++.+++......+.. ..-|...++.+ ....-+-.-.+|.-.++|.++-+++..+.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 5666665 2 99999999887433344432 11121223322 22233334567888899998888777764
Q ss_pred cCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC--CCCCCeEEEEEecCCCCeEEEEeeCC---------
Q 040307 165 HDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP--VQDCPLLRLEWNKADPRFMATVGMDS--------- 233 (339)
Q Consensus 165 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~d~--------- 233 (339)
..+.=+.++..+.+ |+.+....+++.-|..+-.....+.... ..-..++-+.|- +|.+.|-.-.+.
T Consensus 129 y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 129 YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred cCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCC
Confidence 44555667665444 5555555567766665543222211110 001122333442 344333332222
Q ss_pred -CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307 234 -NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 234 -~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 275 (339)
..+..+|+......+..-..|..-.+.|++.|++.++++||-
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 212223433222222222334557789999999876777763
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.57 E-value=0.0042 Score=53.03 Aligned_cols=140 Identities=13% Similarity=0.197 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEE
Q 040307 127 TSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIY 204 (339)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~ 204 (339)
....|-| ++.-++.+..+..+..||-. ++...... .++....++|. ++. .++.+-..+.+.+||+.+......-.
T Consensus 38 i~~~w~~-e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 38 IIHRWRP-EGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ceeeEec-CCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3567877 55558888888999999953 43333332 44556678888 544 45556677899999998775333322
Q ss_pred eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
.. .+.. .-+.|++ ....++.+...+. +.|++.... ..+.....|...+.+++|.+.+ +.+.++.|
T Consensus 115 gg-~~s~--sll~wsK-g~~el~ig~~~gn-~viynhgts-R~iiv~Gkh~RRgtq~av~lEd--~vil~dcd 179 (615)
T KOG2247|consen 115 GG-TSSK--SLLAWSK-GTPELVIGNNAGN-IVIYNHGTS-RRIIVMGKHQRRGTQIAVTLED--YVILCDCD 179 (615)
T ss_pred cC-cchH--HHHhhcc-CCccccccccccc-eEEEeccch-hhhhhhcccccceeEEEecccc--eeeecCcH
Confidence 22 1112 2278987 7788888888888 999998763 3333444488899999999986 45555444
No 433
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=0.86 Score=40.02 Aligned_cols=75 Identities=13% Similarity=0.273 Sum_probs=50.5
Q ss_pred CeEEEEEecCCCCeEEEEeeCCCeEEEEecCC---------CCCceEEEe-----------cCCCCeeEEEeccCC--CC
Q 040307 212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRF---------PTNPVVVLS-----------KHEGSVNGISWAPLY--GR 269 (339)
Q Consensus 212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~---------~~~~~~~~~-----------~~~~~v~~~~~~p~~--~~ 269 (339)
.|..+..++ .|..++..+.+| |.|..+.. .+++....+ ...-.+..++|+|+. +.
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecC-CCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 466778887 899998888888 55544411 112111110 111256788999986 55
Q ss_pred eEEEEeCCCcEEEEEecCCC
Q 040307 270 RLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 270 ~l~~~~~dg~v~iwd~~~~~ 289 (339)
.|..-+.|+.+++||+....
T Consensus 182 hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eEEEEecCcEEEEEecCCcc
Confidence 78888889999999998766
No 434
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.23 E-value=3.4 Score=35.93 Aligned_cols=152 Identities=10% Similarity=-0.046 Sum_probs=83.7
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcc-cceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcE
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF-SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSL 98 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i 98 (339)
...+..+++ +.++++|. .|.+.. -...+..+ .. ........+..+.|.+++ .+++++.+--
T Consensus 241 f~~v~~~~d---G~~~~vg~-----~G~~~~--s~d~G~~~W~~---~~~~~~~~l~~v~~~~dg-----~l~l~g~~G~ 302 (398)
T PLN00033 241 FSTVNRSPD---GDYVAVSS-----RGNFYL--TWEPGQPYWQP---HNRASARRIQNMGWRADG-----GLWLLTRGGG 302 (398)
T ss_pred eeeEEEcCC---CCEEEEEC-----CccEEE--ecCCCCcceEE---ecCCCccceeeeeEcCCC-----CEEEEeCCce
Confidence 445566777 88888888 565443 33333332 21 124456678999999999 7888776633
Q ss_pred EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee---ccCCceeEEEec
Q 040307 99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV---AHDREVYDISWG 175 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---~~~~~v~~~~~~ 175 (339)
.++..+.++......+.......-...+.++.|.+ ++.. +.++..|.+.... ..++...... .-...++.+.|.
T Consensus 303 l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~ 379 (398)
T PLN00033 303 LYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFF 379 (398)
T ss_pred EEEecCCCCcccccceeecccCCCCcceEEEEEcC-CCcE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEc
Confidence 44444444311111111111000003588899985 5554 4555677766543 4455433332 223567899988
Q ss_pred CCcEEEEEeCCCcEEEE
Q 040307 176 GFNVFASVSGDCSVRVF 192 (339)
Q Consensus 176 ~~~~l~~~~~d~~i~i~ 192 (339)
+.+.....+.+|.|.-|
T Consensus 380 ~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 380 DDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCCceEEEeCCcEEEEe
Confidence 44444555567776544
No 435
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.10 E-value=2.2 Score=33.14 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=86.9
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-----eEEEE---ecC
Q 040307 171 DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-----KVVVL---DIR 242 (339)
Q Consensus 171 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-----~i~i~---d~~ 242 (339)
.++-...+.|+.+.....|.+|++..........-. --+.|..+.++. .|++|++--.+.. .+++| +..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 333343244444456678999999944432222211 237899999997 8999998655543 24554 222
Q ss_pred -CCCCceE-EEecC---------------------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307 243 -FPTNPVV-VLSKH---------------------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG 299 (339)
Q Consensus 243 -~~~~~~~-~~~~~---------------------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 299 (339)
....++. .+.+| ..++.+++..|-.+ -|+.|+ ++.+.||.+........+ ....
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~-~~~l 175 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEK-FSFL 175 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEeccc-ccEE
Confidence 1122322 22222 23567788888754 455555 468999988876510000 0000
Q ss_pred cccceeeecc-cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 300 DVEPELCYQS-MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 300 ~~~~~~~~~~-~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..+.....-| .-.+..+++..+ ++|...+-.+++++|
T Consensus 176 DFe~~l~~~~~~~~p~~v~ic~~---yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAICEG---YIAVMSDLEVLVLKL 213 (215)
T ss_pred echhhhhheecCceEEEEEEEee---EEEEecCCEEEEEEE
Confidence 0001111112 233667777654 677788888888775
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=93.74 E-value=3.8 Score=34.78 Aligned_cols=152 Identities=11% Similarity=0.022 Sum_probs=77.9
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
..+.++.+.| ++.++++ +..|.+..-.-..++....+. .-...++++.+. ++..++. +..|.+++=....+..-.
T Consensus 173 g~~~~i~~~~-~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSP-DGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECC-CCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccc
Confidence 6788999987 6665555 445655432112223222222 234578888888 4555544 556766432233332211
Q ss_pred eEEeC-CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe---cCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 202 IIYEN-PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS---KHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 202 ~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
..... ......+..+.+.| ++..+++ +.++. + +..... ++...... .-....+.+.|..++ +.++ .+..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~-v-~~S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~-~G~~ 322 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGT-L-LVSKDG-GKTWEKDPVGEEVPSNFYKIVFLDPE-KGFV-LGQR 322 (334)
T ss_pred cccCCccccccceeeEEEcC-CCCEEEE-cCCCe-E-EEeCCC-CCCCeECCcCCCCCcceEEEEEeCCC-ceEE-ECCC
Confidence 11111 00123577889987 6665554 45554 3 333332 33333332 112357788887665 3554 5556
Q ss_pred CcEEEEEe
Q 040307 278 SRALIWEV 285 (339)
Q Consensus 278 g~v~iwd~ 285 (339)
|.|.-|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 77776653
No 437
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.66 E-value=6 Score=36.78 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=45.4
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
..-++++.-+|. ++.++.+. .||.|++|+|.+....... ....+-..+.|...| ++...+|
T Consensus 14 ~e~~~aiqshp~---~~s~v~~~----~d~si~lfn~~~r~qski~------~~~~p~~nlv~tnhg------l~~~tsd 74 (1636)
T KOG3616|consen 14 DEFTTAIQSHPG---GQSFVLAH----QDGSIILFNFIPRRQSKIC------EEAKPKENLVFTNHG------LVTATSD 74 (1636)
T ss_pred cceeeeeeecCC---CceEEEEe----cCCcEEEEeecccchhhhh------hhcCCccceeeeccc------eEEEecc
Confidence 345778888899 99999999 7999999998866543332 223344566677666 3333344
Q ss_pred -cEEEEee
Q 040307 97 -SLRLWEI 103 (339)
Q Consensus 97 -~i~iw~~ 103 (339)
.+.-|.-
T Consensus 75 rr~la~~~ 82 (1636)
T KOG3616|consen 75 RRALAWKE 82 (1636)
T ss_pred chhheeec
Confidence 6666653
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.62 E-value=4.5 Score=35.27 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=55.6
Q ss_pred EEEEcCCCCCCCCCeEEEeCC-c-E---EEEeecC-C--cceeEEEeecCCCccCCCCEEEEEEcCC----------CCC
Q 040307 76 NIAFFPSEETLNPDIVATSGD-S-L---RLWEIHD-D--RTELKSLLNSNKTSEFSSAITSFDWAGF----------DTR 137 (339)
Q Consensus 76 ~l~~~~~~~~~~~~~la~~~~-~-i---~iw~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~ 137 (339)
.++.+|++ ++||.+.+ . + .-|+... + +........+.-..+....|+++.|-|. +..
T Consensus 6 ~isls~~~-----d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~ 80 (415)
T PF14655_consen 6 SISLSPDG-----DLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT 80 (415)
T ss_pred eEEecCCC-----CEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE
Confidence 46788999 88888864 2 2 2354321 1 1111112222111111136777666542 457
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 138 RVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 138 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
.++.|..+|.|++|.. +|..+....-|..+|..+...
T Consensus 81 ~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 81 CIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 8999999999999996 565555545677788777765
No 439
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.61 E-value=4.3 Score=35.00 Aligned_cols=145 Identities=9% Similarity=-0.004 Sum_probs=74.6
Q ss_pred CCEEEEEEcCCCCCEEEEEe-----------CCC-eEEEEECCC--Ce--eeeeeeccCCceeEEEecCCcEEEEEeCCC
Q 040307 124 SAITSFDWAGFDTRRVATCS-----------VDT-TCVIWDIDR--EI--LETQLVAHDREVYDISWGGFNVFASVSGDC 187 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~-----------~d~-~v~i~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~ 187 (339)
.....|+|.+ +++++++-. ..+ .|.+++-.. ++ ....+...-.....+++.++.+++ +....
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYV-ATPPD 91 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEE-eCCCe
Confidence 3456889997 888777653 223 777776432 22 223333333455788888433444 44443
Q ss_pred cEEEEECCCCc----ceeeEEeC-CC----CCCCeEEEEEecCCCCeEEEEeeC-------------------CCeEEEE
Q 040307 188 SVRVFDLRDKE----RSTIIYEN-PV----QDCPLLRLEWNKADPRFMATVGMD-------------------SNKVVVL 239 (339)
Q Consensus 188 ~i~i~d~~~~~----~~~~~~~~-~~----~~~~v~~~~~~p~~~~~l~~~~~d-------------------~~~i~i~ 239 (339)
..++.|..... ....+... .. +......++|.| +|.+.++-+.. +. |.-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~r~ 169 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LFRY 169 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCce-EEEE
Confidence 33343543321 12222221 11 123477899998 77766554421 22 3334
Q ss_pred ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307 240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 275 (339)
|.. ...+..+...-.....++|+|+| .++++-.
T Consensus 170 ~pd--g~~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 170 NPD--GGKLRVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred ecC--CCeEEEEecCcCCCccceECCCC-CEEEEcc
Confidence 433 22233333223345789999998 4665543
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.48 E-value=4.6 Score=34.86 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=76.0
Q ss_pred CCeeEEEeeecCCcccEEEEeeec-------cccCC-eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFL-------EDYSN-KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~-------~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
..+..|+|.++ |+++++-... ....+ .|.+++-....+.......+ ...-.....+++.+++
T Consensus 14 ~~P~~ia~d~~---G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~G------ 83 (367)
T TIGR02604 14 RNPIAVCFDER---GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVGG------ 83 (367)
T ss_pred CCCceeeECCC---CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecCC------
Confidence 45678999999 8877664210 00123 67774322223333221122 2233456889998876
Q ss_pred eEEEeCCcEEEE-eecCC-----cceeE-EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----------------
Q 040307 90 IVATSGDSLRLW-EIHDD-----RTELK-SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----------------- 145 (339)
Q Consensus 90 ~la~~~~~i~iw-~~~~~-----~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------------- 145 (339)
++++....|..+ +.+.. +.+.+ ..+.... .........+.|.| ++.+.++-+..
T Consensus 84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQI-NNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCC-CcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccc
Confidence 555554555434 54322 11111 1222210 00114577899998 88776654421
Q ss_pred --CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEE
Q 040307 146 --TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV 183 (339)
Q Consensus 146 --~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 183 (339)
|.|.-++...++. ..+...-.....++|+ .++++++-
T Consensus 162 ~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 162 LGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence 3455555554432 2222112234578887 56665543
No 441
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.02 E-value=2.6 Score=36.67 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=53.0
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec----C-C---------------c--EEE
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG----G-F---------------N--VFA 181 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~----~-~---------------~--~l~ 181 (339)
..+.++..+| ++++.|+...-|.|.++|+.++..++.+++..+.- +.|. + . . +++
T Consensus 308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEE
Confidence 5678899999 78999998888999999999998777777655421 2221 1 1 1 233
Q ss_pred EEeCCCcEEEEECCCCcceee
Q 040307 182 SVSGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 182 ~~~~d~~i~i~d~~~~~~~~~ 202 (339)
-+-.-|.|.+|.++.+.....
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a 405 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAA 405 (415)
T ss_pred EeccCCeEEEEecCCCCEEEE
Confidence 445567788888887764443
No 442
>PRK10115 protease 2; Provisional
Probab=92.91 E-value=8.6 Score=36.39 Aligned_cols=193 Identities=14% Similarity=0.118 Sum_probs=101.2
Q ss_pred CceEEEEcCCCCCCCCCeEEEeC----C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 73 TPTNIAFFPSEETLNPDIVATSG----D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~~----~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+..+.|+|++ ++||.+. + .|++.|+.+++. ....+.+ .. ..++|.+ +++.|+.+..+
T Consensus 128 ~l~~~~~Spdg-----~~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~~-------~~-~~~~w~~-D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDN-----TIMALAEDFLSRRQYGIRFRNLETGNW-YPELLDN-------VE-PSFVWAN-DSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCC-----CEEEEEecCCCcEEEEEEEEECCCCCC-CCccccC-------cc-eEEEEee-CCCEEEEEEec
Confidence 36678899999 7887653 2 788899987651 1122221 12 4689997 77766655432
Q ss_pred ------CeEEEEECCCC--eeeeeeeccCCcee-EEEec-CCcEEEEEeC---CCcEEEEECCCCc-ceeeEEeCCCCCC
Q 040307 146 ------TTCVIWDIDRE--ILETQLVAHDREVY-DISWG-GFNVFASVSG---DCSVRVFDLRDKE-RSTIIYENPVQDC 211 (339)
Q Consensus 146 ------~~v~i~d~~~~--~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~~~ 211 (339)
..|+.+++.++ +....+........ .+..+ ++.+++..+. ++.+.+++..... ....+... ...
T Consensus 193 ~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~ 270 (686)
T PRK10115 193 PVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR--RKD 270 (686)
T ss_pred CCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC--CCC
Confidence 36888888877 33333433222222 22334 5665554433 3578888854321 11222222 112
Q ss_pred CeEEEEEecCCCCeEEEEeeCC-C-eEEEEecCCCCCceEEEecC-C-CCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 212 PLLRLEWNKADPRFMATVGMDS-N-KVVVLDIRFPTNPVVVLSKH-E-GSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 212 ~v~~~~~~p~~~~~l~~~~~d~-~-~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
....+. +. .+.+++....+. . .|...++....+ ...+..+ . ..+..+.+..+ .++++...+|.-+++-+..
T Consensus 271 ~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 271 HEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQINR 345 (686)
T ss_pred CEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEcC
Confidence 222222 32 333333322222 2 243344442122 3444444 2 36788888733 5777888888777766654
No 443
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.78 E-value=7.5 Score=35.42 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=36.6
Q ss_pred eEEEEECCCCeeeeeeeccCCceeE---------EEec-CC---cEEEEEeCCCcEEEEECCCCcc
Q 040307 147 TCVIWDIDREILETQLVAHDREVYD---------ISWG-GF---NVFASVSGDCSVRVFDLRDKER 199 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~~~~~v~~---------~~~~-~~---~~l~~~~~d~~i~i~d~~~~~~ 199 (339)
.|.-.|+++++....++.....+.+ +... ++ ..++.+..+|.+++.|-++++.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 6777799999987777643322222 2221 33 3788999999999999998874
No 444
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.77 E-value=0.71 Score=24.65 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=21.4
Q ss_pred EecCCCCeeEEEeccCCCCeEEEEeCC--CcEEEE
Q 040307 251 LSKHEGSVNGISWAPLYGRRLCSVADD--SRALIW 283 (339)
Q Consensus 251 ~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~v~iw 283 (339)
+......-....|+|||..++.+...+ |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344455678899999996555566666 766666
No 445
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=5.8 Score=36.76 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=51.5
Q ss_pred CCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307 144 VDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 144 ~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
.--.|+|++. +|+.+..+.-....+-.+.|++...|++...+|++++|++-...........+.....|..+.+.. +|
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~G 139 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NG 139 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-Cc
Confidence 3456888887 566565554334478899999888888889999999999876543321111111233455555553 55
Q ss_pred CeEEE
Q 040307 224 RFMAT 228 (339)
Q Consensus 224 ~~l~~ 228 (339)
-.+++
T Consensus 140 Vavlt 144 (829)
T KOG2280|consen 140 VAVLT 144 (829)
T ss_pred eEEEe
Confidence 44433
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.62 E-value=0.21 Score=46.47 Aligned_cols=103 Identities=13% Similarity=0.193 Sum_probs=58.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC--CCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF--DTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d 145 (339)
.+..+.|-.++|-.... |+.. ---+.+.||+++--+.+....+..+....+...+.-+.|.|. +.-++..+-.+
T Consensus 129 kgf~G~v~dl~fah~~~---pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKC---PKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred hcCCCCcccccccccCC---hHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 46677788888865442 2332 111277888876432112222222211112245566677663 55677777888
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
+.+++...++... ..+.+|...+.+++|-
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFF 233 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHH
Confidence 8998877755432 4455688888877765
No 447
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.29 E-value=6.7 Score=33.69 Aligned_cols=188 Identities=11% Similarity=0.030 Sum_probs=97.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-----CCc---EEEEEeCC---CcEEEEECCCCc-ceee
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-----GFN---VFASVSGD---CSVRVFDLRDKE-RSTI 202 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~---~l~~~~~d---~~i~i~d~~~~~-~~~~ 202 (339)
...+|+....++-+.+||+. |+.++.+. .+.++.+..- .+. ++++..++ ..|++|.+.... ....
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 45688888899999999995 55566653 2333333322 232 33344333 469999776322 1221
Q ss_pred EEeC----CCCCCCeEEEEE--ecCCCCe-EEEEeeCCCeEEEEecCCC--C----CceEEEecCCCCeeEEEeccCCCC
Q 040307 203 IYEN----PVQDCPLLRLEW--NKADPRF-MATVGMDSNKVVVLDIRFP--T----NPVVVLSKHEGSVNGISWAPLYGR 269 (339)
Q Consensus 203 ~~~~----~~~~~~v~~~~~--~p~~~~~-l~~~~~d~~~i~i~d~~~~--~----~~~~~~~~~~~~v~~~~~~p~~~~ 269 (339)
+... ......+..+++ +|.++.+ .++...+|. +.-|.+... + ++++++.. ...+-.|...... .
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~-~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~-g 220 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGR-VEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET-G 220 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSE-EEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCce-EEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc-C
Confidence 1110 001134666776 4445654 444555665 777766421 2 24566665 4478888888887 4
Q ss_pred eEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee--e---cccceeEEEEecC--CCC-ceEEEe-cCCeEEEEe
Q 040307 270 RLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC--Y---QSMAEINVVRWSP--LEL-DWIAIA-FVNKLQLLK 338 (339)
Q Consensus 270 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~i~~~~~~p--~~~-~l~~~~-~d~~v~~w~ 338 (339)
.|..+-++--|.-|+.+... ...+..+ . .....|..|+.-. ++. ||++++ .+++..+|+
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~----------~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEG----------GNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-----------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred CEEEecCccEEEEEecCCCC----------CCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 88899888666556555433 1112222 1 1345677777643 443 566665 677888886
No 448
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.20 E-value=9.6 Score=35.27 Aligned_cols=174 Identities=13% Similarity=0.123 Sum_probs=91.6
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC-CCCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE-TLNP 88 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~ 88 (339)
...+....+.|-.+.|.++ ++.+.+.. .+|.|++|+++....+... .....+...+..=.|-++.+ ..+.
T Consensus 122 ~~~~~kl~~kvv~Ik~~~~---~~~I~vvl----~nG~i~~~d~~~~~l~~~~--~l~~~~~~~v~ys~fv~~~~~~~~~ 192 (670)
T PF10395_consen 122 NEFELKLDDKVVGIKFSSD---GKIIYVVL----ENGSIQIYDFSENSLEKVP--QLKLKSSINVSYSKFVNDFELENGK 192 (670)
T ss_pred ceEEEEcccceEEEEEecC---CCEEEEEE----cCCcEEEEecccccccccc--ccccccccceehhhhhcccccccCC
Confidence 3445556889999999988 88888877 7999999998444433322 22223333221113433321 0001
Q ss_pred CeE-EEeC---C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307 89 DIV-ATSG---D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL 162 (339)
Q Consensus 89 ~~l-a~~~---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 162 (339)
.++ ..+. + ..+++.+.... .....+.....+.+...=..+++. .|.+..- .+++|.+|++...+...++
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~~~-~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~~~tI 267 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSNES-SSIFELSSTILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQIQKTI 267 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEeccCC-cceEEeehheeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceEEEEE
Confidence 333 3332 2 78888882221 122222211100010111233443 4554443 6789999999887755555
Q ss_pred ecc-----C-CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc
Q 040307 163 VAH-----D-REVYDISWG-GFNVFASVSGDCSVRVFDLRDKER 199 (339)
Q Consensus 163 ~~~-----~-~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~ 199 (339)
.-. . ..+.++.-- +++.|++. +..|++.|+.-...
T Consensus 268 ~l~~ii~~~~~~~vSl~~~s~nRvLLs~--~nkIyLld~~~~si 309 (670)
T PF10395_consen 268 SLPSIIDKESDDLVSLKPPSPNRVLLSV--NNKIYLLDLKFESI 309 (670)
T ss_pred EechhhccccccceEeecCCCCeEEEEc--CCEEEEEeehhhhh
Confidence 311 1 233343333 45555543 57899999876543
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=2 Score=37.88 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=48.8
Q ss_pred CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC--CCCCCC------CcccceeeecccceeEEEEecCCC---Cce
Q 040307 257 SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS--GNGGPS------GDVEPELCYQSMAEINVVRWSPLE---LDW 325 (339)
Q Consensus 257 ~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~i~~~~~~p~~---~~l 325 (339)
.|..+..++.|+ .++-.+.+|.+.++=.+...+.. +++.+. +....+......-.+..++|+|+. ..+
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 578889999995 77777778876655433322100 011000 000001111123357889999985 568
Q ss_pred EEEecCCeEEEEeC
Q 040307 326 IAIAFVNKLQLLKV 339 (339)
Q Consensus 326 ~~~~~d~~v~~w~v 339 (339)
+.-..|+.+|+|++
T Consensus 184 ~iL~sdnviRiy~l 197 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSL 197 (741)
T ss_pred EEEecCcEEEEEec
Confidence 88899999999974
No 450
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.97 E-value=11 Score=35.61 Aligned_cols=70 Identities=10% Similarity=0.197 Sum_probs=41.6
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC----------Ce---eeeee--------eccCCceeEEEecC----Cc
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDR----------EI---LETQL--------VAHDREVYDISWGG----FN 178 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~----------~~---~~~~~--------~~~~~~v~~~~~~~----~~ 178 (339)
-.|..+..+| +|.+++..|..|.+ |-.+.. ++ ..+++ ......|..+.|+| +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3688899998 99999988875544 333321 11 01111 12234566677763 45
Q ss_pred EEEEEeCCCcEEEEECC
Q 040307 179 VFASVSGDCSVRVFDLR 195 (339)
Q Consensus 179 ~l~~~~~d~~i~i~d~~ 195 (339)
.|+.-..|+.+|+||+.
T Consensus 163 ~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDIS 179 (717)
T ss_pred eEEEEecCCEEEEEecC
Confidence 66666667777777764
No 451
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.82 E-value=7.1 Score=32.95 Aligned_cols=90 Identities=3% Similarity=-0.083 Sum_probs=48.3
Q ss_pred CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC----eEEEEECCCCe
Q 040307 89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT----TCVIWDIDREI 157 (339)
Q Consensus 89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~----~v~i~d~~~~~ 157 (339)
++++.|+. .+..||+.+.++..+..+.... ..-..++. .++++.+.|+.++ .+.+||+++.+
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-----r~~~~~~~--~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-----RVQPVCVK--LQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-----CCcceEEE--ECCEEEEEcCCCCccccceEEEecCCCe
Confidence 67777651 6888898888765554333211 11112222 2667888887664 35688887764
Q ss_pred eeeeeecc-----CC---ceeEEEecCCcEEEEEeCC
Q 040307 158 LETQLVAH-----DR---EVYDISWGGFNVFASVSGD 186 (339)
Q Consensus 158 ~~~~~~~~-----~~---~v~~~~~~~~~~l~~~~~d 186 (339)
- ..+... .. ....+...++.+++.|+.+
T Consensus 198 W-~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 198 W-QKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred e-EECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 2 122110 00 1122333367788888866
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.72 E-value=13 Score=35.77 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=64.9
Q ss_pred CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC----CceEEEecCC----------CCeeEEEeccCCCCeEEEE
Q 040307 209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT----NPVVVLSKHE----------GSVNGISWAPLYGRRLCSV 274 (339)
Q Consensus 209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~----~~~~~~~~~~----------~~v~~~~~~p~~~~~l~~~ 274 (339)
...+...++|+|.+...||+....|. ..|||+.... ..+.....+. .....|.|.++.. .|+.+
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~ 221 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVC 221 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCc-EEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEE
Confidence 34577899999988899999999999 9999992111 1111111111 2234788988873 66666
Q ss_pred eCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307 275 ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 275 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 322 (339)
+ ...+.++|++... ..+.+........|.++.-+|..
T Consensus 222 ~-r~~l~~~d~~~~~----------~~~~l~~~~~~~~IlDv~~~~~~ 258 (765)
T PF10214_consen 222 N-RSKLMLIDFESNW----------QTEYLVTAKTWSWILDVKRSPDN 258 (765)
T ss_pred c-CCceEEEECCCCC----------ccchhccCCChhheeeEEecCCc
Confidence 5 3578999999876 11112223345567777777763
No 453
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.65 E-value=2 Score=32.42 Aligned_cols=31 Identities=10% Similarity=0.300 Sum_probs=24.9
Q ss_pred CceeEEEecC-------CcEEEEEeCCCcEEEEECCCC
Q 040307 167 REVYDISWGG-------FNVFASVSGDCSVRVFDLRDK 197 (339)
Q Consensus 167 ~~v~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~ 197 (339)
..+..++|+| +-+|++...++.|.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 3789999994 347888899999999986643
No 454
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.36 E-value=1.4 Score=38.15 Aligned_cols=158 Identities=10% Similarity=0.114 Sum_probs=88.4
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEE-EEEEcCCCCCEEEEEeCCCeEE
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAIT-SFDWAGFDTRRVATCSVDTTCV 149 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~d~~v~ 149 (339)
..|..+-..|++ +.+..-++ ++.++++.+...+..+.......+ -...|+ .+..-. .+..++.++.||-|.
T Consensus 221 ~~v~qllL~Pdg-----~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~-~~~~Vte~l~lL~-Gg~SLLv~~~dG~vs 293 (733)
T COG4590 221 SDVSQLLLTPDG-----KTLYVRTGSELVVALLDKRSLQIRKLVDDSPGD-SRHQVTEQLYLLS-GGFSLLVVHEDGLVS 293 (733)
T ss_pred cchHhhEECCCC-----CEEEEecCCeEEEEeecccccchhhhhhcCCCc-hHHHHHHHHHHHh-CceeEEEEcCCCcee
Confidence 456677788999 66666554 888888877653222222111100 001222 222222 567788899999998
Q ss_pred EE-ECCCCe-----eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 150 IW-DIDREI-----LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 150 i~-d~~~~~-----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
-| |.+.+. .++.++-...++..+.-. +.+-+++-+..|++.++.....+.. +++. --..+.-++++| .
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l--L~~~--~~~~~~~~~~Sp-~ 368 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL--LFER--AYQAPQLVAMSP-N 368 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce--ehhh--hhcCcceeeeCc-c
Confidence 87 444332 222222222333333322 3566778888898888876554422 2221 112556789998 7
Q ss_pred CCeEEEEeeCCCeEEEEecCC
Q 040307 223 PRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~ 243 (339)
+.++++ ++++.++++.+.+
T Consensus 369 ~~~Ll~--e~~gki~~~~l~N 387 (733)
T COG4590 369 QAYLLS--EDQGKIRLAQLEN 387 (733)
T ss_pred cchhee--ecCCceEEEEecC
Confidence 777765 3333399998876
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=6.5 Score=38.88 Aligned_cols=143 Identities=8% Similarity=0.137 Sum_probs=86.9
Q ss_pred eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C--C------cEEEEEeCCCcEEEEECCCCccee------eEEeCC
Q 040307 143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-G--F------NVFASVSGDCSVRVFDLRDKERST------IIYENP 207 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~--~------~~l~~~~~d~~i~i~d~~~~~~~~------~~~~~~ 207 (339)
+.|+.+.+|+.+++.....+.+.+..|..+..- | | ++++..+.--.|.++-+...+... ..+..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458899999999977777777777777777665 3 2 233333334455555433221110 011111
Q ss_pred CCCCCeEEEEEecCCCCeEEEEeeCCCeEEE--EecCCCC-------------------CceEEEe-cCCCCeeEEEecc
Q 040307 208 VQDCPLLRLEWNKADPRFMATVGMDSNKVVV--LDIRFPT-------------------NPVVVLS-KHEGSVNGISWAP 265 (339)
Q Consensus 208 ~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i--~d~~~~~-------------------~~~~~~~-~~~~~v~~~~~~p 265 (339)
.....|.++... .+|+++++|-.+ . ++= |....+. ..+..+. .+..+|..++...
T Consensus 176 ~dg~~V~~I~~t-~nGRIF~~G~dg-~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYT-ENGRIFFAGRDG-N-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEec-cCCcEEEeecCC-C-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 234578888855 588877765544 4 432 2221110 0112223 5567899999987
Q ss_pred CCCCeEEEEeCCCcEEEEEecCCC
Q 040307 266 LYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 266 ~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.- .++.+-++.|.|.+|++....
T Consensus 253 SR-~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 253 SR-NILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cc-ceeeeeccCceEEEEEccCCC
Confidence 76 699999999999999999854
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.98 E-value=7.9 Score=31.88 Aligned_cols=98 Identities=12% Similarity=0.187 Sum_probs=57.9
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe------CCCcEEEEECCCCcceeeEEeC-CCCCCCeEEEE
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVS------GDCSVRVFDLRDKERSTIIYEN-PVQDCPLLRLE 217 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~ 217 (339)
..|++||..+.+-...-.+-.+.|+++.|. +.++++.|. ....+..||+.+..-...-... ..-.+++..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 468999987765333333456789999998 566666654 3556888998887632221101 11236788887
Q ss_pred EecCCCC-eEEEEe-eCCC-eEEEEecCC
Q 040307 218 WNKADPR-FMATVG-MDSN-KVVVLDIRF 243 (339)
Q Consensus 218 ~~p~~~~-~l~~~~-~d~~-~i~i~d~~~ 243 (339)
+...++. +.+.|. .++. .|..||-.+
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCc
Confidence 7544554 444443 2222 377776544
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.79 E-value=9.1 Score=32.30 Aligned_cols=64 Identities=5% Similarity=-0.022 Sum_probs=36.0
Q ss_pred CCCEEEEEeC-----CCeEEEEECCCCee--eeeeeccCCceeEEEecCCcEEEEEeCCCc----EEEEECCCCc
Q 040307 135 DTRRVATCSV-----DTTCVIWDIDREIL--ETQLVAHDREVYDISWGGFNVFASVSGDCS----VRVFDLRDKE 198 (339)
Q Consensus 135 ~~~~l~~~~~-----d~~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~----i~i~d~~~~~ 198 (339)
++++.+.|+. ...+..||+.+.+= +..+......-..++..++.+++.|+.++. +..||+.+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 5677777774 24688889876641 111211111111222226778888877643 5688888765
No 458
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.44 E-value=2.4 Score=32.07 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=26.6
Q ss_pred CeeEEEeccCC-----CCeEEEEeCCCcEEEEEecCC
Q 040307 257 SVNGISWAPLY-----GRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 257 ~v~~~~~~p~~-----~~~l~~~~~dg~v~iwd~~~~ 288 (339)
.+.+++|||.| .-+|++.+.++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78899999954 358999999999999987753
No 459
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.17 E-value=0.24 Score=46.20 Aligned_cols=140 Identities=10% Similarity=0.073 Sum_probs=79.9
Q ss_pred CCCeEEEEECCCCe-eeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCC--Ccceee--EEeCCCCCCCeEEE
Q 040307 144 VDTTCVIWDIDREI-LETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRD--KERSTI--IYENPVQDCPLLRL 216 (339)
Q Consensus 144 ~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~--~~~~~~--~~~~~~~~~~v~~~ 216 (339)
..+.+++-+....- .-..+++..+.+-.++|- +...+. -.-|.+.+||+.- ++.... +.........+.-+
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 34666766654332 112346677888888886 322222 2346788998763 221111 11111123455677
Q ss_pred EEecC--CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE-----------EeccCCCCeEEEEeCCCcEEEE
Q 040307 217 EWNKA--DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI-----------SWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 217 ~~~p~--~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-----------~~~p~~~~~l~~~~~dg~v~iw 283 (339)
.|.|. +.-++..+-.++. +++....... ...+.+|..++..+ ..|||| +.+++++.||.+++|
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGE-IRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY 262 (1283)
T ss_pred eecccccccceeeeccCCCc-eeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence 77763 3344544444555 7776655322 23344566554443 368999 699999999999999
Q ss_pred EecCCC
Q 040307 284 EVVGPG 289 (339)
Q Consensus 284 d~~~~~ 289 (339)
.+.-..
T Consensus 263 Qiyi~g 268 (1283)
T KOG1916|consen 263 QIYITG 268 (1283)
T ss_pred eeeeec
Confidence 887655
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.16 E-value=1.8 Score=34.09 Aligned_cols=65 Identities=5% Similarity=0.048 Sum_probs=46.4
Q ss_pred CCCeEEEEeeCCCeEEEEecCCCCCceEE------Ee-------cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVV------LS-------KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
.+++|++-+.+|. +++||+.+....+.. +. .....|..+.++.+| .-+++-+ +|..+.|+....
T Consensus 21 ~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccccc
Confidence 6788999999998 999999874322211 11 345678899999888 4666554 578888887665
Q ss_pred C
Q 040307 289 G 289 (339)
Q Consensus 289 ~ 289 (339)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 4
No 461
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.86 E-value=12 Score=32.03 Aligned_cols=41 Identities=7% Similarity=-0.110 Sum_probs=20.7
Q ss_pred CeEEEEECCCCe--eeeeeeccCCceeEEEecCCcEEEEEeCC
Q 040307 146 TTCVIWDIDREI--LETQLVAHDREVYDISWGGFNVFASVSGD 186 (339)
Q Consensus 146 ~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 186 (339)
..+.+||..+.+ .+..+......-.+++..++.+++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 468889987764 11122110111123333367777877753
No 462
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.79 E-value=14 Score=32.87 Aligned_cols=138 Identities=9% Similarity=0.101 Sum_probs=79.1
Q ss_pred CeEEEeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC------CCCEEEEEeCCCeEEEEECCCCe-e
Q 040307 89 DIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF------DTRRVATCSVDTTCVIWDIDREI-L 158 (339)
Q Consensus 89 ~~la~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~l~~~~~d~~v~i~d~~~~~-~ 158 (339)
.++..-++ .++-.|++.++ .+.....|. .+ -+.|.|. ....-+.|-.+..|.-.|.+-.. .
T Consensus 480 sli~~dg~~~~kLykmDIErGk--vveeW~~~d------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGK--VVEEWDLKD------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred ceEEecCCCcccceeeecccce--eeeEeecCC------cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 55555443 67777777776 666666654 33 5667662 11223344455666666765432 1
Q ss_pred eeeeeccCCceeEEEec-----CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 159 ETQLVAHDREVYDISWG-----GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 159 ~~~~~~~~~~v~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
+... .....++.=.|+ .+.+++.++..|-|++||--.......+. .-...|..+.... +|.++++.+..-
T Consensus 551 i~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP---~lG~aIk~idvta-~Gk~ilaTCk~y 625 (776)
T COG5167 551 IKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP---GLGDAIKHIDVTA-NGKHILATCKNY 625 (776)
T ss_pred eeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc---ccccceeeeEeec-CCcEEEEeecce
Confidence 2111 122223323333 47799999999999999954443222222 1345788888886 777776655442
Q ss_pred CeEEEEecC
Q 040307 234 NKVVVLDIR 242 (339)
Q Consensus 234 ~~i~i~d~~ 242 (339)
+.+-|++
T Consensus 626 --llL~d~~ 632 (776)
T COG5167 626 --LLLTDVP 632 (776)
T ss_pred --EEEEecc
Confidence 7777775
No 463
>PLN02153 epithiospecifier protein
Probab=89.53 E-value=12 Score=31.84 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=66.0
Q ss_pred CeEEEeCC-------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----------CeEEE
Q 040307 89 DIVATSGD-------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----------TTCVI 150 (339)
Q Consensus 89 ~~la~~~~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------~~v~i 150 (339)
++++.|+. .+.+||+.+.++..+..+...... ....-.+++.. ++++++.|+.+ ..|.+
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p-~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP-EARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC-CCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEE
Confidence 67777761 678889888765544333110000 00111223332 56777777754 25778
Q ss_pred EECCCCeeeeeeecc-----CCceeEEEecCCcEEEEEeCC-------------CcEEEEECCCCcceeeEEe--CCCCC
Q 040307 151 WDIDREILETQLVAH-----DREVYDISWGGFNVFASVSGD-------------CSVRVFDLRDKERSTIIYE--NPVQD 210 (339)
Q Consensus 151 ~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~--~~~~~ 210 (339)
||.++.+ ...+... ...-.+++..++++++.++.+ ..+.+||+.+.+-...... .+...
T Consensus 164 yd~~~~~-W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 164 YNIADGK-WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred EECCCCe-EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 8987664 2122111 111112232356666665532 4588899887763322111 11111
Q ss_pred CCeEEEEEecCCCCeEEEEee
Q 040307 211 CPLLRLEWNKADPRFMATVGM 231 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~ 231 (339)
...+++.. ++++++.|+.
T Consensus 243 -~~~~~~~~--~~~iyv~GG~ 260 (341)
T PLN02153 243 -SVFAHAVV--GKYIIIFGGE 260 (341)
T ss_pred -ceeeeEEE--CCEEEEECcc
Confidence 12222222 5677777775
No 464
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.33 E-value=9.3 Score=30.20 Aligned_cols=172 Identities=9% Similarity=0.078 Sum_probs=87.9
Q ss_pred CeEEEeCC---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCC
Q 040307 89 DIVATSGD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------TTCVIWDIDRE 156 (339)
Q Consensus 89 ~~la~~~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~ 156 (339)
+.++.+.+ .|--||..........++..-.........+.-..+| ++++++-.-.| |.++.|-...
T Consensus 71 q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h- 148 (310)
T KOG4499|consen 71 QEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGH- 148 (310)
T ss_pred ceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCC-
Confidence 45555443 5555664333222333322111111124556667787 88884432222 3334443311
Q ss_pred eeeeeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEE--CCCCcc--eeeEEeC----CCCCCCeEEEEEecCCCCeE
Q 040307 157 ILETQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFD--LRDKER--STIIYEN----PVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 157 ~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d--~~~~~~--~~~~~~~----~~~~~~v~~~~~~p~~~~~l 226 (339)
.+..+...-.--+.++|+ +.+ +..+-+.+-.|.-|| ..++.. +..++.. +......-.++... +|++.
T Consensus 149 -~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~ 226 (310)
T KOG4499|consen 149 -QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLY 226 (310)
T ss_pred -CceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEE
Confidence 111222222233567888 543 445556667776677 444331 1111111 00111223345553 66666
Q ss_pred EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccC
Q 040307 227 ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL 266 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~ 266 (339)
++.-..++ |.-.|..+ ++.+.++.-....|++++|--.
T Consensus 227 Va~~ng~~-V~~~dp~t-GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 227 VATFNGGT-VQKVDPTT-GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEecCcE-EEEECCCC-CcEEEEEEcCCCceEEEEecCC
Confidence 66555555 99999988 7778888888889999999743
No 465
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.99 E-value=14 Score=31.94 Aligned_cols=39 Identities=5% Similarity=-0.031 Sum_probs=19.8
Q ss_pred eEEEEECCCCeee--eeeeccCCceeEEEecCCcEEEEEeC
Q 040307 147 TCVIWDIDREILE--TQLVAHDREVYDISWGGFNVFASVSG 185 (339)
Q Consensus 147 ~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~ 185 (339)
.+.+||..+.+-. ..+......-.++...++.+++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 5888998776521 11111111122344446777777764
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.87 E-value=3 Score=32.94 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=43.4
Q ss_pred eccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee------cccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 263 WAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY------QSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
+...+ .+|++.+.+|.+++||+...+. .. +...+.|+... .....|..+....+|.-+|+- .+|....
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~-~~---~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~ 91 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKA-VL---PPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYS 91 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCee-cc---CCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEE
Confidence 34456 5899999999999999999771 00 00011122211 355678899998888645543 3455666
Q ss_pred Ee
Q 040307 337 LK 338 (339)
Q Consensus 337 w~ 338 (339)
|+
T Consensus 92 y~ 93 (219)
T PF07569_consen 92 YS 93 (219)
T ss_pred ec
Confidence 64
No 467
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.80 E-value=8.1 Score=36.24 Aligned_cols=96 Identities=11% Similarity=0.251 Sum_probs=54.4
Q ss_pred EEEEcCCCCCEEEEEeCCC-----eEEEEECC---CCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc
Q 040307 128 SFDWAGFDTRRVATCSVDT-----TCVIWDID---REILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE 198 (339)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~-----~v~i~d~~---~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~ 198 (339)
.+.|-| .|..+++-+.|| .|..+..+ .|+.-... +....+..++|+ ....++. ...+.+.+|-..+-.
T Consensus 251 ~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyh 327 (1243)
T COG5290 251 QLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYH 327 (1243)
T ss_pred cccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceE
Confidence 478998 899999877554 35555432 23221111 234456777887 4444443 345679999877654
Q ss_pred ceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307 199 RSTIIYENPVQDCPLLRLEWNKADPRFMATV 229 (339)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 229 (339)
--.. .+. .-..+.-+.|+|...+.++..
T Consensus 328 WYLK-~e~--~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 328 WYLK-VER--QIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred EEEE-Eee--cCCCcceeeeccccCcEEEEe
Confidence 2111 111 223566788988655555543
No 468
>PLN02193 nitrile-specifier protein
Probab=88.40 E-value=18 Score=32.44 Aligned_cols=104 Identities=12% Similarity=0.060 Sum_probs=55.2
Q ss_pred CeEEEeC-C------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCC
Q 040307 89 DIVATSG-D------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-----TCVIWDIDRE 156 (339)
Q Consensus 89 ~~la~~~-~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~ 156 (339)
.+++.|+ + .+..||+.+.++..+..+...... ..-.++... ++++++.|+.++ .+..||+.+.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~---R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP---RSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC---ccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCC
Confidence 6777765 1 678888888775554433110000 111122222 567777777643 4677888765
Q ss_pred eeeeeeec-----cCCceeEEEecCCcEEEEEeCC----CcEEEEECCCCc
Q 040307 157 ILETQLVA-----HDREVYDISWGGFNVFASVSGD----CSVRVFDLRDKE 198 (339)
Q Consensus 157 ~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~ 198 (339)
+-. .+.. ....-..+...++.+++.++.+ ..+.+||+.+.+
T Consensus 305 ~W~-~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 305 KWF-HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEE-eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 421 1111 0001112222356777777755 458899998876
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.64 E-value=4.7 Score=35.05 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=87.9
Q ss_pred eeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-E-eCCCC-CCCeE-EEEEecCCCCeEEEEeeCCCeE
Q 040307 162 LVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-Y-ENPVQ-DCPLL-RLEWNKADPRFMATVGMDSNKV 236 (339)
Q Consensus 162 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~-~~~~~-~~~v~-~~~~~p~~~~~l~~~~~d~~~i 236 (339)
+......+..+-.. +++.+..-+. ..+.++++.+....... . ..++. ...|+ .+..- ..+.-+++++.||. |
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~-v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGL-V 292 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCc-e
Confidence 33334456666666 5776666554 67888888766522221 1 11110 01121 11212 26777888999998 6
Q ss_pred EEE-ecCCCCCceEEE----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccc
Q 040307 237 VVL-DIRFPTNPVVVL----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA 311 (339)
Q Consensus 237 ~i~-d~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (339)
.-| |++....+-... +-...++.-+.-. +..+-+++-..+|++.++.....+ ++.......
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~-------------~lL~~~~~~ 358 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEK-------------LLLFERAYQ 358 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCc-------------ceehhhhhc
Confidence 555 777655432211 1111223222211 223567777888888888766655 444444444
Q ss_pred eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 312 EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+.-+++||.+.+++ .-..|.++++++
T Consensus 359 ~~~~~~~Sp~~~~Ll-~e~~gki~~~~l 385 (733)
T COG4590 359 APQLVAMSPNQAYLL-SEDQGKIRLAQL 385 (733)
T ss_pred CcceeeeCcccchhe-eecCCceEEEEe
Confidence 677899999987554 344566776653
No 470
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=87.41 E-value=33 Score=34.16 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=74.8
Q ss_pred cEEEEeecC-----CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 97 SLRLWEIHD-----DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 97 ~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
.+.|+|+-. +++.....++.-..++..++|..++=- +|. |+++ ...+|.+|+++....+.-..--.-++.-
T Consensus 1066 r~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV--~G~-l~~~-~GqKI~v~~l~r~~~ligVaFiD~~~yv 1141 (1366)
T KOG1896|consen 1066 RIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RGH-LLSS-QGQKIIVRKLDRDSELIGVAFIDLPLYV 1141 (1366)
T ss_pred cEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe--ccE-EEEc-cCcEEEEEEeccCCcceeeEEeccceeE
Confidence 789998754 211111112111122223778777643 454 4443 3468999999433222111111112222
Q ss_pred EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC-eEEEEeeCCCeEEEEecC
Q 040307 172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR-FMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~d~~~i~i~d~~ 242 (339)
.+.. =.++|+.|.--..|.+.-.........+.......-.+.++.|--++++ .++++..+++ |++|-..
T Consensus 1142 ~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN-i~vy~Y~ 1213 (1366)
T KOG1896|consen 1142 HSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN-IHVYMYA 1213 (1366)
T ss_pred EehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc-EEEEEeC
Confidence 2222 2677888877777877766655433344443344567888888763333 5667777787 8887543
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.39 E-value=15 Score=30.28 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=56.3
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe------CCCeEEEEECCCCeeeeeeec-----c
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS------VDTTCVIWDIDREILETQLVA-----H 165 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------~d~~v~i~d~~~~~~~~~~~~-----~ 165 (339)
.|++||..+.++.... .+-. +.|++|.|.. +.++++.|. ....+..||..+.. ...+.. -
T Consensus 17 ~lC~yd~~~~qW~~~g--~~i~-----G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~i 87 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPG--NGIS-----GTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSI 87 (281)
T ss_pred EEEEEECCCCEeecCC--CCce-----EEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccC
Confidence 8999999888643222 1222 7899999984 666666664 35578889987664 323332 2
Q ss_pred CCceeEEEec--CC-cEEEEEe-CCC--cEEEEECCCC
Q 040307 166 DREVYDISWG--GF-NVFASVS-GDC--SVRVFDLRDK 197 (339)
Q Consensus 166 ~~~v~~~~~~--~~-~~l~~~~-~d~--~i~i~d~~~~ 197 (339)
.++|..+.+. +. ++.+.|. .++ .|..||-.+.
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 3678888885 43 4444443 233 4555654443
No 472
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.24 E-value=10 Score=35.62 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=64.0
Q ss_pred EEeeecCCcccEEEEeeecc-ccCCeEEEEecCCCC---CcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-c
Q 040307 23 VAWSVRHDRKSRLAVGSFLE-DYSNKIELVNFNPET---SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-S 97 (339)
Q Consensus 23 i~~sp~~~~~~~la~g~~~~-~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~ 97 (339)
++|-|. |..+|+-...+ +..-.|+. +...+ +++.. ..+....+..++|+-.. .++|.+.+ .
T Consensus 252 LSWkpq---gS~~ati~td~~~~S~~ViF--fErNGLrHGef~l----r~~~dEk~~~~~wn~~s-----~vlav~~~n~ 317 (1243)
T COG5290 252 LSWKPQ---GSKYATIGTDGCSTSESVIF--FERNGLRHGEFDL----RVGCDEKAFLENWNLLS-----TVLAVAEGNL 317 (1243)
T ss_pred cccccC---CceeeeeccCCCCCcceEEE--EccCCcccCCccc----cCCchhhhhhhhhhHHH-----HHHHHhhcce
Confidence 789999 99888865211 11223444 44333 22221 24556677888998887 78888776 9
Q ss_pred EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
+++|-..+-.+-....... ..+.-+.|+|...+.++..+.
T Consensus 318 ~~lwttkNyhWYLK~e~~i-------p~~s~vkwhpe~~nTl~f~d~ 357 (1243)
T COG5290 318 LKLWTTKNYHWYLKVERQI-------PGISYVKWHPEEKNTLLFRDG 357 (1243)
T ss_pred EEEEEccceEEEEEEeecC-------CCcceeeeccccCcEEEEecC
Confidence 9999988776555555444 457788999855555554443
No 473
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.64 E-value=19 Score=30.71 Aligned_cols=91 Identities=5% Similarity=-0.039 Sum_probs=43.6
Q ss_pred CeEEEeCC---cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----------CeEEEEE
Q 040307 89 DIVATSGD---SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----------TTCVIWD 152 (339)
Q Consensus 89 ~~la~~~~---~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------~~v~i~d 152 (339)
++++.|+. .+..+|++. .++..+..+.... . ... +++.. ++++.+.|+.+ ..+..||
T Consensus 19 ~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~--R--~~~-~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd 91 (346)
T TIGR03547 19 KVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGP--R--NQA-VAAAI--DGKLYVFGGIGKANSEGSPQVFDDVYRYD 91 (346)
T ss_pred EEEEEccccCCeeEEEECCCCCCCceECCCCCCCC--c--ccc-eEEEE--CCEEEEEeCCCCCCCCCcceecccEEEEE
Confidence 56676662 666777632 3333333332111 0 111 22222 67788888753 2477788
Q ss_pred CCCCeeeeeeeccCC---ceeEEEecCCcEEEEEeCC
Q 040307 153 IDREILETQLVAHDR---EVYDISWGGFNVFASVSGD 186 (339)
Q Consensus 153 ~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~~~~~d 186 (339)
..+.+=...-..... ....+...++.+.+.|+.+
T Consensus 92 ~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 92 PKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 876542111101111 1111223368888888764
No 474
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.14 E-value=2.7 Score=22.60 Aligned_cols=25 Identities=4% Similarity=-0.001 Sum_probs=17.5
Q ss_pred cCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 265 PLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 265 p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
|++..++++...++.|.++|..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 5664455555578899999987665
No 475
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.63 E-value=27 Score=30.58 Aligned_cols=109 Identities=6% Similarity=-0.033 Sum_probs=61.3
Q ss_pred CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-----ceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307 210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-----PVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALI 282 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-----~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~i 282 (339)
...+..+.|.+ ++.+++++ ..|. + ++.... +. ........ ...+.++.|.+++ .++.++..|.+..
T Consensus 280 ~~~l~~v~~~~-dg~l~l~g-~~G~-l-~~S~d~-G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~ 352 (398)
T PLN00033 280 ARRIQNMGWRA-DGGLWLLT-RGGG-L-YVSKGT-GLTEEDFDFEEADIKSRGFGILDVGYRSKK--EAWAAGGSGILLR 352 (398)
T ss_pred ccceeeeeEcC-CCCEEEEe-CCce-E-EEecCC-CCcccccceeecccCCCCcceEEEEEcCCC--cEEEEECCCcEEE
Confidence 35688999986 77777654 4554 3 333222 22 12222221 2358899999887 3455556676655
Q ss_pred EEecCCCCCCCCCCCCCccccee-eecccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307 283 WEVVGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
.. ..++ ...... ...-....+.+.|.++++ .++.+.+|.|.-|
T Consensus 353 s~-D~G~----------tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 353 ST-DGGK----------SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred eC-CCCc----------ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 42 3333 011111 112245688999988765 6777888876554
No 476
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.54 E-value=46 Score=33.19 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.6
Q ss_pred eeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEe
Q 040307 12 HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVN 52 (339)
Q Consensus 12 ~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~ 52 (339)
.++..+.....++|.|. ..++|.|+ ..|.|++|.
T Consensus 30 ~~~G~~~~~~~~afD~~---q~llai~t----~tg~i~~yg 63 (993)
T KOG1983|consen 30 NRHGFPSTPSALAFDPT---QGLLAIGT----RTGAIKIYG 63 (993)
T ss_pred eecCCCCCCcceeeccc---cceEEEEE----ecccEEEec
Confidence 34445567788999999 99999999 799999943
No 477
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.32 E-value=26 Score=30.24 Aligned_cols=152 Identities=12% Similarity=0.072 Sum_probs=83.3
Q ss_pred cEEEEeecCCcceeEEEeecCC---CccCCCCEEEEEE--cCCCCC-EEEEEeCCCeEEEEECC---CC----eeeeeee
Q 040307 97 SLRLWEIHDDRTELKSLLNSNK---TSEFSSAITSFDW--AGFDTR-RVATCSVDTTCVIWDID---RE----ILETQLV 163 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~--~~~~~~-~l~~~~~d~~v~i~d~~---~~----~~~~~~~ 163 (339)
+|++|.++.... .+..+.... .... ..+..++. +|.++. +.+....+|.+..|.+. .+ +.++.+.
T Consensus 128 ~l~~f~id~~~g-~L~~v~~~~~p~~~~~-~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 128 SLRLFRIDPDTG-ELTDVTDPAAPIATDL-SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp EEEEEEEETTTT-EEEE-CBTTC-EE-SS-SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred eEEEEEecCCCC-cceEcCCCCccccccc-ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 699999875321 222222110 0011 35677776 443444 56667888998888774 22 3566665
Q ss_pred ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc--ceeeEE--eCCCCCCCeEEEEEec--CCCCeEEEEeeCCCeE
Q 040307 164 AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE--RSTIIY--ENPVQDCPLLRLEWNK--ADPRFMATVGMDSNKV 236 (339)
Q Consensus 164 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~--~~~~~~~~v~~~~~~p--~~~~~l~~~~~d~~~i 236 (339)
. ...+..+... ....|..+-.+.-|.-|+..-.. ....+. ....-...+-.++.-. ....||++++......
T Consensus 206 ~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 206 V-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp --SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred C-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 3 4577888887 56788888888888888876332 222221 1222335677777753 2234666666555459
Q ss_pred EEEecCCCCCceEEE
Q 040307 237 VVLDIRFPTNPVVVL 251 (339)
Q Consensus 237 ~i~d~~~~~~~~~~~ 251 (339)
.||+.+.....+..+
T Consensus 285 ~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 285 AVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEESSTT--EEEEE
T ss_pred EEEecCCCCcccceE
Confidence 999987644444444
No 478
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=83.69 E-value=50 Score=32.98 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=85.7
Q ss_pred CEEEEEeC---------CCeEEEEECCC-----Ce-----eeeee--eccCCceeEEEecCCcEEEEEeCCCcEEEEEC-
Q 040307 137 RRVATCSV---------DTTCVIWDIDR-----EI-----LETQL--VAHDREVYDISWGGFNVFASVSGDCSVRVFDL- 194 (339)
Q Consensus 137 ~~l~~~~~---------d~~v~i~d~~~-----~~-----~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~- 194 (339)
.+|++|.. -|.++|+|+-. ++ .++.+ +..+++|..++=..|.++. + ....|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~-~-~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLS-S-QGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEE-c-cCcEEEEEEec
Confidence 47777753 47899998732 22 12222 2456777777655565444 3 3457999999
Q ss_pred CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--CCCCeeEEEeccCCC-CeE
Q 040307 195 RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--HEGSVNGISWAPLYG-RRL 271 (339)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~p~~~-~~l 271 (339)
+.......-+.. .++.-..... -+++|+.|.--.+ |.+.-.......+..+.. ..-.++++.|--+|+ ..+
T Consensus 1125 r~~~ligVaFiD----~~~yv~s~~~-vknlIl~gDV~ks-isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~f 1198 (1366)
T KOG1896|consen 1125 RDSELIGVAFID----LPLYVHSMKV-VKNLILAGDVMKS-ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSF 1198 (1366)
T ss_pred cCCcceeeEEec----cceeEEehhh-hhhheehhhhhhc-eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEE
Confidence 554433333321 2333333332 4577777777777 887776542222222221 123678888887764 357
Q ss_pred EEEeCCCcEEEEEecCCC
Q 040307 272 CSVADDSRALIWEVVGPG 289 (339)
Q Consensus 272 ~~~~~dg~v~iwd~~~~~ 289 (339)
+++..|++|++|-.....
T Consensus 1199 lvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1199 LVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred EEEcCCCcEEEEEeCCCC
Confidence 788899999999887765
No 479
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.31 E-value=4.2 Score=20.44 Aligned_cols=25 Identities=20% Similarity=-0.005 Sum_probs=20.4
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeee
Q 040307 137 RRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 137 ~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
..++.++.+|.+..+|.++++.+..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 4677788899999999998886654
No 480
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=82.21 E-value=23 Score=34.10 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=61.8
Q ss_pred CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE-EeeCC---C-eEEEEecCCCCCceEEEecCCCCeeE
Q 040307 186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT-VGMDS---N-KVVVLDIRFPTNPVVVLSKHEGSVNG 260 (339)
Q Consensus 186 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d~---~-~i~i~d~~~~~~~~~~~~~~~~~v~~ 260 (339)
.+.|.+-|.........-.. ...++.+-+|+| +|+.|+- .+.++ . .|++-|+++.+.-+.++......|..
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~---~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaipr 403 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIE---DTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPR 403 (912)
T ss_pred CCeEEEEecCCCCceEEEec---CCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccc
Confidence 35788888877654332122 357889999999 8888876 55555 2 48899998877767777777888888
Q ss_pred EEeccCCCCeEEEEe
Q 040307 261 ISWAPLYGRRLCSVA 275 (339)
Q Consensus 261 ~~~~p~~~~~l~~~~ 275 (339)
-...++|+..|+-.+
T Consensus 404 wrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 404 WRVLENGDTVIVYVS 418 (912)
T ss_pred eEecCCCCeEEEEEc
Confidence 888888876666544
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.20 E-value=16 Score=26.13 Aligned_cols=86 Identities=8% Similarity=0.052 Sum_probs=51.2
Q ss_pred EEecCCCCeEEEEeeCCCeEEEEecCCC-------CCceEEEecCCCCeeEEEecc---C-CCCeEEEEeCCCcEEEEEe
Q 040307 217 EWNKADPRFMATVGMDSNKVVVLDIRFP-------TNPVVVLSKHEGSVNGISWAP---L-YGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~p---~-~~~~l~~~~~dg~v~iwd~ 285 (339)
.|.. ....|++++..++ |.|++.... ...+..+.- ...|++++-.| + +...|+.|+ ...+..||+
T Consensus 5 kfDG-~~pcL~~aT~~gK-V~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGK-VFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EeCC-CceeEEEEecCCE-EEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 4543 3346777777776 889876532 223445543 55777775544 2 223566665 568999999
Q ss_pred cCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307 286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS 319 (339)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 319 (339)
.... -+........|+++.+-
T Consensus 81 ~~N~-------------d~Fyke~~DGvn~i~~g 101 (136)
T PF14781_consen 81 ENNS-------------DLFYKEVPDGVNAIVIG 101 (136)
T ss_pred ccCc-------------hhhhhhCccceeEEEEE
Confidence 9877 23333344556666654
No 482
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.20 E-value=5.9 Score=21.20 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=25.3
Q ss_pred CCCEEEE-EeCCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 135 DTRRVAT-CSVDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 135 ~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
+++.|.+ ...++.|.++|..+++.+..+.. ......+.|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 4554444 44588999999988887777754 233344544
No 483
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=81.99 E-value=40 Score=30.64 Aligned_cols=251 Identities=11% Similarity=0.106 Sum_probs=115.1
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-CCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcc
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-PYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRT 108 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~ 108 (339)
+..++.+. .+|.+....++.++..+.. .. .+. .....++.+..++. .+|..|++ .=.++.+.....
T Consensus 222 ~~~~lL~~----e~G~l~~l~l~~~~~~i~i--~~-~g~~~~~~s~l~~l~~g~----d~lf~gs~~gds~l~~~~~~~l 290 (504)
T PF10433_consen 222 GDRILLQD----EDGDLYLLTLDNDGGSISI--TY-LGTLCSIASSLTYLKNGG----DYLFVGSEFGDSQLLQISLSNL 290 (504)
T ss_dssp SSEEEEEE----TTSEEEEEEEEEEEEEEEE--EE-EEE--S-ESEEEEESTT------EEEEEESSS-EEEEEEESESE
T ss_pred CCEEEEEe----CCCeEEEEEEEECCCeEEE--EE-cCCcCChhheEEEEcCCC----EEEEEEEecCCcEEEEEeCCCc
Confidence 67788888 7999999776665542221 11 333 55667888877652 57777663 333333334444
Q ss_pred eeEEEeecCCCccCCCCEEEEEEcCC---CCC------EEEEEe---CCCeEEEEECCCCeeee----eeeccC--Ccee
Q 040307 109 ELKSLLNSNKTSEFSSAITSFDWAGF---DTR------RVATCS---VDTTCVIWDIDREILET----QLVAHD--REVY 170 (339)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~------~l~~~~---~d~~v~i~d~~~~~~~~----~~~~~~--~~v~ 170 (339)
+.+..+... +||.+++.-+. ... .|++++ .+|.+++..- |-... ...... ..++
T Consensus 291 ~~~~~~~N~------~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW 362 (504)
T PF10433_consen 291 EVLDSLPNW------GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIW 362 (504)
T ss_dssp EEEEEE----------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEE
T ss_pred EEEEeccCc------CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEE
Confidence 566666654 68999988531 111 444443 4778887642 22111 111122 2344
Q ss_pred EEEecC--CcEEEEEeCCCcEEEEECCC---CcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 171 DISWGG--FNVFASVSGDCSVRVFDLRD---KERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 171 ~~~~~~--~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
.+.... +.+|+.+..+ .-+++.+.. .+..... ....-......+....-.+..++=.+..+ |++.+... .
T Consensus 363 ~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~-~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~--i~l~~~~~-~ 437 (504)
T PF10433_consen 363 TLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEV-EEDGFDTDEPTLAAGNVGDGRIVQVTPKG--IRLIDLED-G 437 (504)
T ss_dssp EE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE----TS-SSS-EEEEEEETTTEEEEEESSE--EEEEESSS-T
T ss_pred EeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhh-hhccCCCCCCCeEEEEcCCCeEEEEecCe--EEEEECCC-C
Confidence 444331 4566665544 445666642 2221111 11001111112221111234444444443 88888765 3
Q ss_pred CceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee----ecccceeEEEEecC
Q 040307 246 NPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC----YQSMAEINVVRWSP 320 (339)
Q Consensus 246 ~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~p 320 (339)
+....... ....|.+.+.+.. +++.+-.++.+.++.+.... ...... ......|.++...|
T Consensus 438 ~~~~~w~~~~~~~I~~a~~~~~---~v~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 438 KLTQEWKPPAGSIIVAASINDP---QVLVALSGGELVYFELDDNK-----------ISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEEEE-TTS---SEEEESSS---EEEEEE-TTEEEEEEEETTE-----------EEEEEE----EE-SS-EEEEE---
T ss_pred eEEEEEeCCCCCeEEEEEECCC---EEEEEEeCCcEEEEEEECCc-----------eeeeeeccccccCCCceEEEEeCC
Confidence 33333322 3445656555542 56666667889999998876 111111 12466788888766
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.65 E-value=5.6 Score=21.03 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=20.9
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccC--CeEEEE
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYS--NKIELV 51 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~--~~i~i~ 51 (339)
...-....|||| |+.|+..+. .+ |...||
T Consensus 8 ~~~~~~p~~SpD---Gk~i~f~s~---~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPD---GKYIYFTSN---RNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TT---SSEEEEEEE---CT--SSEEEE
T ss_pred CccccCEEEecC---CCEEEEEec---CCCCCCcCEE
Confidence 446778899999 999998885 34 666665
No 485
>PLN02153 epithiospecifier protein
Probab=80.62 E-value=35 Score=29.08 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=35.5
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCee--eeeeec----cCCceeEEEecCCcEEEEEeCC-----------CcEEEE
Q 040307 135 DTRRVATCSVD-----TTCVIWDIDREIL--ETQLVA----HDREVYDISWGGFNVFASVSGD-----------CSVRVF 192 (339)
Q Consensus 135 ~~~~l~~~~~d-----~~v~i~d~~~~~~--~~~~~~----~~~~v~~~~~~~~~~l~~~~~d-----------~~i~i~ 192 (339)
++++++.|+.+ ..+.+||+.+.+- +..+.. ....-.+++..++.+++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56777787753 3577889876541 111100 0111122333367777777754 247788
Q ss_pred ECCCCc
Q 040307 193 DLRDKE 198 (339)
Q Consensus 193 d~~~~~ 198 (339)
|+.+.+
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 888765
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.61 E-value=32 Score=28.61 Aligned_cols=204 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred eEEEEcCCCCCCCCCeEEEeCC--cEEEEeec-----CCcceeEEEeecCCCccCCCCEEEEEEcCCCCCE---------
Q 040307 75 TNIAFFPSEETLNPDIVATSGD--SLRLWEIH-----DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRR--------- 138 (339)
Q Consensus 75 ~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 138 (339)
+.|+++|.+ .+-++..+ ...+||.+ .-...++.++.......-....+.+.|+. ...+
T Consensus 26 WGia~~p~~-----~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~ 99 (336)
T TIGR03118 26 WGLSYRPGG-----PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITG 99 (336)
T ss_pred ceeEecCCC-----CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccc
Q ss_pred ---EEEEeCCCeEEEEECCCCee-------eeeeeccCCceeEEEec----CCcEEEEEeCCCcEEEEECCCCcceee--
Q 040307 139 ---VATCSVDTTCVIWDIDREIL-------ETQLVAHDREVYDISWG----GFNVFASVSGDCSVRVFDLRDKERSTI-- 202 (339)
Q Consensus 139 ---l~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~~v~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~-- 202 (339)
++.+++||+|.-|...-+.. +..-.....--..+++. ...+.++--..++|.+||-.-.+....
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Q ss_pred -------------EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCC--CeeEEEeccC-
Q 040307 203 -------------IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG--SVNGISWAPL- 266 (339)
Q Consensus 203 -------------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~p~- 266 (339)
-...-...-.|+-..-.+ +++.=+.|.-.|. |.+||+. +..++++..... .-+.|+..|.
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~-VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGY-VNVFTLN--GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcce-EEEEcCC--CcEEEEeccCCcccCCceeeeChhh
Q ss_pred -----CCCeEEEEeCCCcEEEEEecCCC
Q 040307 267 -----YGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 267 -----~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+ .+|+---.||+|..||..++.
T Consensus 256 FG~~sg-~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 256 FGSLSG-ALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hCCCCC-CeEEeecCCceeEEecCCCCc
No 487
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.41 E-value=9.2 Score=35.10 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=24.2
Q ss_pred CeeEEEecc---CCCCeEEEEeCCCcEEEEEecCCC
Q 040307 257 SVNGISWAP---LYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 257 ~v~~~~~~p---~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+..+++++ ++..+|++.+.|+.+|+||+.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTC
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCe
Confidence 455566666 233699999999999999999887
No 488
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=79.98 E-value=48 Score=30.28 Aligned_cols=175 Identities=13% Similarity=0.133 Sum_probs=101.3
Q ss_pred CeEEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 146 TTCVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
+.|.+.| ++.+.+..+. +....|.++.|- +.-+++|--.---+.+.|+..++.+..+.+.. -+=.+=-+||-+
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLK---IPGfS~YLHP~~ 379 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELK---IPGFSDYLHPYD 379 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEE---CccchhceeECC
Confidence 3566776 4555555553 345689999999 77788877775679999999998877765541 122333455645
Q ss_pred CCeEEEEeeC-----------CCeEEEEecCCCCCceEEEec---CCC-------CeeEEEeccCCCCeEEEEeC-----
Q 040307 223 PRFMATVGMD-----------SNKVVVLDIRFPTNPVVVLSK---HEG-------SVNGISWAPLYGRRLCSVAD----- 276 (339)
Q Consensus 223 ~~~l~~~~~d-----------~~~i~i~d~~~~~~~~~~~~~---~~~-------~v~~~~~~p~~~~~l~~~~~----- 276 (339)
.++|+--+.+ |-+|.+||+.....|...... ..+ .=.++.|++.. .+|+.--.
T Consensus 380 e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~-~ll~~Pv~~~~~~ 458 (521)
T PF09826_consen 380 ENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEK-NLLAFPVSSSYGY 458 (521)
T ss_pred CCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCC-CEEEEEEEEccCc
Confidence 5555443332 235889999987766543221 011 12467888876 35543222
Q ss_pred --CCcEEEEEecCCCCCCCCCCCCCcccceeeecccc-------eeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 277 --DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA-------EINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 277 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
-..+.++++.... .+.......|.. .|....+..+ .|.+.+ ++.|+.++
T Consensus 459 ~~~~g~~v~~i~~~~----------g~~~~g~i~h~~~~~~~~~~~~R~lyi~d--~lYtvS-~~~i~~~~ 516 (521)
T PF09826_consen 459 FNFQGAYVFSIDPED----------GFTLKGKITHPSPDYYYSYQIQRSLYIGD--TLYTVS-DNGIKAYD 516 (521)
T ss_pred cccceEEEEEEeCCC----------CeEEEEEEEccCcccccccceeEEEEECC--EEEEEE-CCEEEEEe
Confidence 2467888888444 233344444543 2555555544 344444 44555554
No 489
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.88 E-value=49 Score=30.32 Aligned_cols=150 Identities=8% Similarity=-0.090 Sum_probs=81.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeecc--C--CceeE-EEecCCcEEEEEe------CCCcEEEEECCCCcceeeEEe
Q 040307 137 RRVATCSVDTTCVIWDIDREILETQLVAH--D--REVYD-ISWGGFNVFASVS------GDCSVRVFDLRDKERSTIIYE 205 (339)
Q Consensus 137 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~--~~v~~-~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~ 205 (339)
..++.++.|+.|.-.|.++++.+...... . ..+++ .... +..++.+. .+|.|..+|.++++..=....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 46777888999999999999987665421 1 01111 1111 33444443 268899999988873322111
Q ss_pred CCCC----------------------------CCCe-EEEEEecCCCCeEEEEeeC-----C----------CeEEEEec
Q 040307 206 NPVQ----------------------------DCPL-LRLEWNKADPRFMATVGMD-----S----------NKVVVLDI 241 (339)
Q Consensus 206 ~~~~----------------------------~~~v-~~~~~~p~~~~~l~~~~~d-----~----------~~i~i~d~ 241 (339)
.+.. ...+ ..+++.| ...+++.+..+ + ..|.-.|+
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1100 0111 1346665 44555555422 1 02556666
Q ss_pred CCCCCceEEEecCCCCe---------eEEEeccCCC--CeEEEEeCCCcEEEEEecCCC
Q 040307 242 RFPTNPVVVLSKHEGSV---------NGISWAPLYG--RRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 242 ~~~~~~~~~~~~~~~~v---------~~~~~~p~~~--~~l~~~~~dg~v~iwd~~~~~ 289 (339)
++ ++..-.++.....+ .-+....+|. ..++.+..+|.+.+.|-.+++
T Consensus 279 ~T-G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 279 DT-GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred cc-CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 66 44444444322111 1122223552 378899999999999998876
No 490
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.78 E-value=14 Score=24.33 Aligned_cols=65 Identities=14% Similarity=0.003 Sum_probs=0.0
Q ss_pred eEEEeccC-CCCeEEEEeC-----------------CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC
Q 040307 259 NGISWAPL-YGRRLCSVAD-----------------DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP 320 (339)
Q Consensus 259 ~~~~~~p~-~~~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 320 (339)
..+++.++ | .+.+|-+. +|.+.-||..+.+ .......-...+.|+.+|
T Consensus 1 ndldv~~~~g-~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~-------------~~vl~~~L~fpNGVals~ 66 (89)
T PF03088_consen 1 NDLDVDQDTG-TVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE-------------TTVLLDGLYFPNGVALSP 66 (89)
T ss_dssp -EEEE-TTT---EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE-------------EEEEEEEESSEEEEEE-T
T ss_pred CceeEecCCC-EEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe-------------EEEehhCCCccCeEEEcC
Q ss_pred CCCceEEE--ecCCeEEEE
Q 040307 321 LELDWIAI--AFVNKLQLL 337 (339)
Q Consensus 321 ~~~~l~~~--~~d~~v~~w 337 (339)
++.+++.+ ..-...|.|
T Consensus 67 d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 67 DESFVLVAETGRYRILRYW 85 (89)
T ss_dssp TSSEEEEEEGGGTEEEEEE
T ss_pred CCCEEEEEeccCceEEEEE
No 491
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=79.59 E-value=18 Score=26.03 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=44.1
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
....++.---|.+| ...|..++. .|++|+.|.+..+...+.. ...+........++|.|.. .+-.-
T Consensus 8 D~s~g~L~P~yD~d---t~llyl~gK---GD~~ir~yEv~~~~p~l~~--l~~~~s~~~~~G~~~lPK~------~~dv~ 73 (136)
T PF08954_consen 8 DTSSGVLMPFYDED---TNLLYLAGK---GDGNIRYYEVSDESPYLHY--LSEYRSPEPQKGFAFLPKR------ACDVM 73 (136)
T ss_dssp ---SS-EEEEE-TT---T-EEEEEET---T-S-EEEEEE-SSTTSEEE--EEEE--SS--SEEEE--GG------GS-GG
T ss_pred cCCCceeEeeEcCC---CCEEEEEec---cCcEEEEEEEcCCCCceEE--ccccccCCCeEeeEecCcc------cCCch
Confidence 34556777777888 777776664 7999999999877555554 3345667788899999964 22222
Q ss_pred C-CcEEEEeecCCcceeE
Q 040307 95 G-DSLRLWEIHDDRTELK 111 (339)
Q Consensus 95 ~-~~i~iw~~~~~~~~~~ 111 (339)
. +..|++.+.+...+++
T Consensus 74 ~~Ei~R~lkl~~~~iepi 91 (136)
T PF08954_consen 74 KCEIARFLKLTNDKIEPI 91 (136)
T ss_dssp GTEEEEEEEEETTEEEEE
T ss_pred heeeeeeeeecCCcEEEE
Confidence 2 2677777777654443
No 492
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=78.42 E-value=72 Score=31.45 Aligned_cols=181 Identities=11% Similarity=0.032 Sum_probs=97.2
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeC-----------CCeEEEEECC-CCeeeeee-
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSV-----------DTTCVIWDID-REILETQL- 162 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~-----------d~~v~i~d~~-~~~~~~~~- 162 (339)
.|++.|...++..+...+... +..-.+..+.|+..+.. +++++.. +|.++.|++- .++.+.-+
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n---e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN---EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC---cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 477777776653333333222 11135666777653333 3333332 3456666652 33322222
Q ss_pred -eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 163 -VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 163 -~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
..-.+.+..++-. ...+++ +....+++||+...+........ .-...|..+.+ .+..+++|....+ +.++-.
T Consensus 931 ~T~~~~~v~Ai~~f-~~~~La-gvG~~l~~YdlG~K~lLRk~e~k-~~p~~Is~iqt---~~~RI~VgD~qeS-V~~~~y 1003 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPF-QGRVLA-GVGRFLRLYDLGKKKLLRKCELK-FIPNRISSIQT---YGARIVVGDIQES-VHFVRY 1003 (1205)
T ss_pred ccCCCccceEEecc-CCEEEE-ecccEEEEeeCChHHHHhhhhhc-cCceEEEEEee---cceEEEEeeccce-EEEEEE
Confidence 1122344444333 334444 34568999999887644332221 12356777776 4567777776666 777666
Q ss_pred CCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 242 RFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 242 ~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+...+.+..+... ...|+.+.+-..+ .+|.+..=|.+.+-.+....
T Consensus 1004 ~~~~n~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred ecCCCeEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEECCCcc
Confidence 6555555555432 2356666665554 57777777888877766544
No 493
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.21 E-value=6.3 Score=19.20 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.2
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEE
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELV 51 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~ 51 (339)
.|.+++..+. ++|+++ ..+.++||
T Consensus 3 ~i~aia~g~~-----~vavaT----S~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDS-----WVAVAT----SAGYLRIF 26 (27)
T ss_pred eEEEEEccCC-----EEEEEe----CCCeEEec
Confidence 5777887777 888888 68999985
No 494
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=78.19 E-value=7.6 Score=20.52 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=21.7
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeee
Q 040307 138 RVATCSVDTTCVIWDIDREILETQLV 163 (339)
Q Consensus 138 ~l~~~~~d~~v~i~d~~~~~~~~~~~ 163 (339)
.+..++.+|.|.-.|.++|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 35566899999999999999887775
No 495
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.11 E-value=34 Score=27.52 Aligned_cols=135 Identities=11% Similarity=0.058 Sum_probs=68.9
Q ss_pred EEEECCCCeeeeeeeccCCceeEE--Eec-CCcEEEEEeCC---CcEEEEECCCCcceeeEEeC---CCCCCCeEEEEEe
Q 040307 149 VIWDIDREILETQLVAHDREVYDI--SWG-GFNVFASVSGD---CSVRVFDLRDKERSTIIYEN---PVQDCPLLRLEWN 219 (339)
Q Consensus 149 ~i~d~~~~~~~~~~~~~~~~v~~~--~~~-~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~ 219 (339)
.+||+.+++. +.+... ..+.|- .+- +|+++.+|+.. ..+++++.-.........+. -.....-.+..--
T Consensus 49 ~~yD~~tn~~-rpl~v~-td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTF-RPLTVQ-TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEecCCCcE-EeccCC-CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4788887753 333222 122332 233 78888888752 45778876541101111111 0112233334444
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCCCCceEEE---ec-----CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVL---SK-----HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~---~~-----~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
| +|+.|+.|+.......+|.-+........+ .. ....--.+...|+| ++++.+..+ -.|||....+
T Consensus 127 ~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~--s~i~d~~~n~ 200 (243)
T PF07250_consen 127 P-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRG--SIIYDYKTNT 200 (243)
T ss_pred C-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCC--cEEEeCCCCe
Confidence 4 899999988886546666653211111111 10 01112256678999 588777654 4566777765
No 496
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=77.56 E-value=40 Score=27.99 Aligned_cols=172 Identities=14% Similarity=0.161 Sum_probs=90.3
Q ss_pred eEEEEECCCCeeeeeeec------cCCceeEEEec--CC-----cEEEEEeCCCcEEEEECCCCcceeeEEeCCC-----
Q 040307 147 TCVIWDIDREILETQLVA------HDREVYDISWG--GF-----NVFASVSGDCSVRVFDLRDKERSTIIYENPV----- 208 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~--~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----- 208 (339)
+|.+||+.+++.++.+.- ..+.+..+.+. ++ ...++=+..+.|.++|+.+++..........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677788888876666532 23456777776 22 2233444456899999998764332211100
Q ss_pred -----------CCCCeEEEEEec--CCCCeEEEEeeCCCeEEEEecCC-----CC--------CceEEEecCCCCeeEEE
Q 040307 209 -----------QDCPLLRLEWNK--ADPRFMATVGMDSNKVVVLDIRF-----PT--------NPVVVLSKHEGSVNGIS 262 (339)
Q Consensus 209 -----------~~~~v~~~~~~p--~~~~~l~~~~~d~~~i~i~d~~~-----~~--------~~~~~~~~~~~~v~~~~ 262 (339)
....+..++.+| .+++.|+.....+. ++|.+.+ .. ..+..+-........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 112355666655 24456666655553 4443321 11 01122221123567889
Q ss_pred eccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc-cceeEEEEecC--CCCceEEE
Q 040307 263 WAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS-MAEINVVRWSP--LELDWIAI 328 (339)
Q Consensus 263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p--~~~~l~~~ 328 (339)
.+++| .++++--..+.|..|+..... .+. ....+..-.. -..+.++.+.+ +|..++.+
T Consensus 193 ~D~~G-~ly~~~~~~~aI~~w~~~~~~-~~~------~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNG-NLYFTDVEQNAIGCWDPDGPY-TPE------NFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTT-EEEEEECCCTEEEEEETTTSB--GC------CEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCC-cEEEecCCCCeEEEEeCCCCc-Ccc------chheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99988 588888889999999988743 000 0011111112 34678899998 77654443
No 497
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=77.35 E-value=54 Score=31.68 Aligned_cols=141 Identities=10% Similarity=0.120 Sum_probs=81.5
Q ss_pred eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C---------CcEEEEEeCCCcEEEEE----CCCCcceeeE--EeC
Q 040307 143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-G---------FNVFASVSGDCSVRVFD----LRDKERSTII--YEN 206 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~---------~~~l~~~~~d~~i~i~d----~~~~~~~~~~--~~~ 206 (339)
+.|+.+.+|+...+...+.+...+..|..+..- | .++|+.+ ....+.++- .++++..... ...
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~fnTgl~v 177 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSLFNTGLVV 177 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEEEecceEE
Confidence 357899999998776666555555556666654 3 1222222 223334432 2222211000 001
Q ss_pred CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-----------------------CceEEEecCCCCeeEEEe
Q 040307 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-----------------------NPVVVLSKHEGSVNGISW 263 (339)
Q Consensus 207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-----------------------~~~~~~~~~~~~v~~~~~ 263 (339)
+-..-.|.++.-+. +|+.+++|..| +.+|.+.-.. .....+..|...|..++.
T Consensus 178 svqGinV~civs~e-~GrIFf~g~~d---~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~v 253 (1263)
T COG5308 178 SVQGINVRCIVSEE-DGRIFFGGEND---PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAV 253 (1263)
T ss_pred eccCceeEEEEecc-CCcEEEecCCC---CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheee
Confidence 11234677777764 89999888777 4455543111 001122346678888998
Q ss_pred ccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 264 APLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 264 ~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.... .+|.+-+....|+-|.+....
T Consensus 254 DqsR-g~ly~Lr~kS~Vray~itkng 278 (1263)
T COG5308 254 DQSR-GLLYVLRKKSAVRAYSITKNG 278 (1263)
T ss_pred cccc-cceeeecccceeeeEeeeccc
Confidence 8776 488899989999999988765
No 498
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=77.20 E-value=51 Score=29.06 Aligned_cols=253 Identities=12% Similarity=0.023 Sum_probs=132.0
Q ss_pred ceeeeeeccCCeeEEEeee---cCCcccEEEEeeeccccCCeEEEEecCCCCCc------ccceeeEeecCCCCceEEEE
Q 040307 9 PGVHTYMAQWPISTVAWSV---RHDRKSRLAVGSFLEDYSNKIELVNFNPETSD------FSADNRLIFDHPYTPTNIAF 79 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp---~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~------~~~~~~~~~~~~~~v~~l~~ 79 (339)
..+.+.+...||..++.-+ .. +...||+=. ..++.||.+....+. ......++...+.....+.+
T Consensus 63 ~lllE~~l~~PILqv~~G~F~s~~-~~~~LaVLh-----P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~ 136 (418)
T PF14727_consen 63 DLLLETQLKDPILQVECGKFVSGS-EDLQLAVLH-----PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCC 136 (418)
T ss_pred cEEEEEecCCcEEEEEeccccCCC-CcceEEEec-----CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEE
Confidence 5677888899999998654 21 245777755 899999988544333 22211222233444555665
Q ss_pred cCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-
Q 040307 80 FPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE- 156 (339)
Q Consensus 80 ~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~- 156 (339)
-|-+...+.++++.-+ | .+.+|+-+.-. ....+... ---..+.|.| ..+.|++++.+..+..|....-
T Consensus 137 G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~------llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La 207 (418)
T PF14727_consen 137 GPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDF------LLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLA 207 (418)
T ss_pred EECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCC------CCCcCeEEee-cCCEEEEecCceeEEEecHHHhh
Confidence 5555322225555544 6 99999876543 23333331 1223567776 7788888888888888765210
Q ss_pred -------------------e---eeeeeeccCCceeEEEec----C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCC
Q 040307 157 -------------------I---LETQLVAHDREVYDISWG----G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQ 209 (339)
Q Consensus 157 -------------------~---~~~~~~~~~~~v~~~~~~----~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 209 (339)
+ +-.++. -...+.++... . ...++-| ..++.+.+... ........
T Consensus 208 ~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~~G--~l~~~krL--- 279 (418)
T PF14727_consen 208 SASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKDNG--SLRFQKRL--- 279 (418)
T ss_pred hccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe--cceEEEEcCCC--eEEEEEec---
Confidence 0 111111 12233333332 1 2233332 34555555432 22222222
Q ss_pred CCCeEEEE-E------ecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCe--eEEEeccCCCCeEEEEeCCCcE
Q 040307 210 DCPLLRLE-W------NKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSV--NGISWAPLYGRRLCSVADDSRA 280 (339)
Q Consensus 210 ~~~v~~~~-~------~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~~~dg~v 280 (339)
+....+++ | .|.....+++++.++. +.||.=. +.+...+....+| .-..|..-. .+|++-+.+|.+
T Consensus 280 d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~-LlVy~d~---~L~WsA~l~~~PVal~v~~~~~~~-G~IV~Ls~~G~L 354 (418)
T PF14727_consen 280 DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGT-LLVYEDT---TLVWSAQLPHVPVALSVANFNGLK-GLIVSLSDEGQL 354 (418)
T ss_pred CCceeeEEEEEeecccCCCCceEEEEEecCCe-EEEEeCC---eEEEecCCCCCCEEEEecccCCCC-ceEEEEcCCCcE
Confidence 11222221 2 1211235778888887 8888532 2222222222222 122222223 489999999999
Q ss_pred EEEEecCCC
Q 040307 281 LIWEVVGPG 289 (339)
Q Consensus 281 ~iwd~~~~~ 289 (339)
.+-=+-+..
T Consensus 355 ~v~YLGTdP 363 (418)
T PF14727_consen 355 SVSYLGTDP 363 (418)
T ss_pred EEEEeCCCC
Confidence 998777654
No 499
>PLN02193 nitrile-specifier protein
Probab=76.95 E-value=56 Score=29.41 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=55.0
Q ss_pred CeEEEeC-C------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCe
Q 040307 89 DIVATSG-D------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREI 157 (339)
Q Consensus 89 ~~la~~~-~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~ 157 (339)
++++.|+ + .+..||+.+.++..+.......... ... .+... ++++++.++.+ ..+.+||+.+.+
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R--~~~-~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIR--GGA-GLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCC--CCc-EEEEE--CCcEEEEECCCCCccCceEEEECCCCE
Confidence 6777765 1 5778888877654332211100000 111 22222 56777777655 468899998765
Q ss_pred eeeeeecc-----CCceeEEEecCCcEEEEEeCC--------------CcEEEEECCCCc
Q 040307 158 LETQLVAH-----DREVYDISWGGFNVFASVSGD--------------CSVRVFDLRDKE 198 (339)
Q Consensus 158 ~~~~~~~~-----~~~v~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 198 (339)
-. .+... .....+++..++++++.|+.. ..+.+||+.+.+
T Consensus 355 W~-~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 355 WT-QVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred EE-EeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 22 22111 111222222367788888753 247888988775
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.78 E-value=18 Score=33.31 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCeEEEEECCC----Ceeeeee--ec--------------------cCCceeEEEec-----CCcEEEEE
Q 040307 135 DTRRVATCSVDTTCVIWDIDR----EILETQL--VA--------------------HDREVYDISWG-----GFNVFASV 183 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~----~~~~~~~--~~--------------------~~~~v~~~~~~-----~~~~l~~~ 183 (339)
+...++.+..||.+....... +...... .. ....+..++.+ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567888888999988887654 1111110 00 01223333332 47789999
Q ss_pred eCCCcEEEEECCCCcc
Q 040307 184 SGDCSVRVFDLRDKER 199 (339)
Q Consensus 184 ~~d~~i~i~d~~~~~~ 199 (339)
+.|+++|+||+.+++.
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999999986
Done!