Query 040307
Match_columns 339
No_of_seqs 577 out of 1826
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 11:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g56_B MGC81050 protein; prote 100.0 9.5E-50 3.3E-54 339.0 36.4 294 15-339 40-341 (357)
2 4gqb_B Methylosome protein 50; 100.0 1.6E-49 5.6E-54 335.1 35.9 289 16-339 29-329 (344)
3 1vyh_C Platelet-activating fac 100.0 1.8E-48 6E-53 337.4 40.5 283 14-339 105-409 (410)
4 3ow8_A WD repeat-containing pr 100.0 2.8E-48 9.4E-53 325.2 37.2 286 15-339 30-319 (321)
5 2ynn_A Coatomer subunit beta'; 100.0 9.3E-47 3.2E-51 313.8 39.3 288 10-339 5-300 (304)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-46 6.1E-51 317.6 38.9 304 9-339 6-333 (345)
7 1got_B GT-beta; complex (GTP-b 100.0 1.4E-45 4.7E-50 311.6 40.8 281 15-338 53-340 (340)
8 2pbi_B Guanine nucleotide-bind 100.0 3.3E-45 1.1E-49 310.8 40.7 282 15-338 62-354 (354)
9 3iz6_a 40S ribosomal protein R 100.0 2.7E-46 9.3E-51 320.6 31.7 285 15-339 64-373 (380)
10 4ery_A WD repeat-containing pr 100.0 2.5E-44 8.6E-49 300.4 38.5 283 15-339 21-310 (312)
11 3frx_A Guanine nucleotide-bind 100.0 4.1E-44 1.4E-48 299.9 38.3 292 15-339 15-315 (319)
12 2hes_X YDR267CP; beta-propelle 100.0 5.3E-44 1.8E-48 300.6 38.8 292 10-339 6-326 (330)
13 1erj_A Transcriptional repress 100.0 4.8E-44 1.7E-48 308.0 39.1 291 12-339 59-387 (393)
14 1gxr_A ESG1, transducin-like e 100.0 7.2E-43 2.5E-47 294.3 41.6 290 9-339 43-335 (337)
15 2xzm_R RACK1; ribosome, transl 100.0 1.2E-42 4.3E-47 293.9 40.3 295 15-339 19-338 (343)
16 2ynn_A Coatomer subunit beta'; 100.0 1.3E-42 4.4E-47 288.9 34.8 243 68-339 10-257 (304)
17 1nr0_A Actin interacting prote 100.0 5.7E-42 1.9E-46 311.2 40.6 289 9-339 50-395 (611)
18 1nr0_A Actin interacting prote 100.0 2.1E-42 7.2E-47 314.0 36.6 290 17-339 18-353 (611)
19 4gqb_B Methylosome protein 50; 100.0 1.5E-41 5.1E-46 286.5 36.0 252 11-289 76-333 (344)
20 2ymu_A WD-40 repeat protein; u 100.0 2.6E-41 8.7E-46 305.4 39.5 274 15-338 301-577 (577)
21 2j04_B YDR362CP, TAU91; beta p 100.0 2.9E-42 9.9E-47 304.9 32.0 320 7-339 123-515 (524)
22 4aow_A Guanine nucleotide-bind 100.0 7.4E-41 2.5E-45 282.5 38.6 294 15-339 36-335 (340)
23 2pm9_A Protein WEB1, protein t 100.0 7.9E-43 2.7E-47 302.7 26.7 309 10-339 60-412 (416)
24 3i2n_A WD repeat-containing pr 100.0 1.2E-41 4E-46 289.2 33.0 296 15-339 16-351 (357)
25 3ow8_A WD repeat-containing pr 100.0 2.9E-41 1E-45 282.6 34.0 246 68-339 29-277 (321)
26 1k8k_C P40, ARP2/3 complex 41 100.0 5.7E-41 2E-45 286.7 36.5 298 16-339 7-359 (372)
27 3k26_A Polycomb protein EED; W 100.0 2.3E-41 8E-46 288.3 33.8 298 15-339 16-364 (366)
28 2pm9_A Protein WEB1, protein t 100.0 2.8E-42 9.6E-47 299.2 28.0 296 13-339 8-335 (416)
29 3ei3_B DNA damage-binding prot 100.0 5.2E-41 1.8E-45 288.3 34.4 284 15-339 71-380 (383)
30 3zwl_B Eukaryotic translation 100.0 4.5E-40 1.6E-44 280.5 39.5 281 14-339 29-344 (369)
31 4h5i_A Guanine nucleotide-exch 100.0 3.5E-40 1.2E-44 280.9 38.5 300 11-339 8-341 (365)
32 4e54_B DNA damage-binding prot 100.0 1.6E-41 5.4E-46 296.3 31.0 287 15-339 117-428 (435)
33 1got_B GT-beta; complex (GTP-b 100.0 2.3E-40 7.8E-45 279.7 37.1 250 9-284 88-340 (340)
34 2xyi_A Probable histone-bindin 100.0 9.4E-41 3.2E-45 290.9 35.0 316 9-339 37-408 (430)
35 1vyh_C Platelet-activating fac 100.0 8.6E-41 2.9E-45 289.2 33.9 241 68-339 105-367 (410)
36 3dm0_A Maltose-binding peripla 100.0 2.7E-40 9.3E-45 304.7 39.1 297 15-339 380-691 (694)
37 1r5m_A SIR4-interacting protei 100.0 1.8E-40 6.1E-45 288.3 35.8 290 9-339 37-359 (425)
38 2pm7_B Protein transport prote 100.0 2.4E-40 8.3E-45 274.2 34.7 250 68-339 6-283 (297)
39 1sq9_A Antiviral protein SKI8; 100.0 1.2E-40 4.2E-45 287.2 33.9 292 15-339 14-393 (397)
40 3dwl_C Actin-related protein 2 100.0 2.1E-41 7.2E-46 290.1 27.3 298 16-339 10-377 (377)
41 3vl1_A 26S proteasome regulato 100.0 1.6E-40 5.5E-45 288.6 32.8 288 18-339 98-417 (420)
42 2ymu_A WD-40 repeat protein; u 100.0 2.4E-39 8.1E-44 292.5 40.5 274 16-339 261-537 (577)
43 3odt_A Protein DOA1; ubiquitin 100.0 2.7E-39 9.2E-44 269.7 37.8 283 6-339 6-294 (313)
44 3vl1_A 26S proteasome regulato 100.0 3.3E-40 1.1E-44 286.7 32.9 280 19-339 58-363 (420)
45 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-39 4.3E-44 275.6 34.9 257 68-338 12-280 (345)
46 1gxr_A ESG1, transducin-like e 100.0 1.3E-39 4.6E-44 274.3 34.1 282 14-339 6-294 (337)
47 3bg1_A Protein SEC13 homolog; 100.0 1.1E-40 3.7E-45 278.8 27.2 253 68-339 10-291 (316)
48 4aez_A CDC20, WD repeat-contai 100.0 4.1E-39 1.4E-43 278.1 36.6 275 20-339 96-378 (401)
49 1erj_A Transcriptional repress 100.0 6.3E-39 2.2E-43 276.1 37.4 257 68-339 61-339 (393)
50 3gre_A Serine/threonine-protei 100.0 2.8E-40 9.6E-45 288.7 29.0 309 7-338 51-437 (437)
51 2pm7_B Protein transport prote 100.0 8.8E-39 3E-43 264.9 35.3 252 15-289 7-287 (297)
52 4g56_B MGC81050 protein; prote 100.0 2.4E-39 8.1E-44 275.0 31.5 249 13-289 90-345 (357)
53 4gga_A P55CDC, cell division c 100.0 2.8E-38 9.7E-43 274.5 38.3 278 19-339 107-393 (420)
54 3dw8_B Serine/threonine-protei 100.0 6.4E-39 2.2E-43 280.7 34.0 299 15-338 26-443 (447)
55 3bg1_A Protein SEC13 homolog; 100.0 2.1E-39 7.1E-44 271.0 28.8 252 15-289 11-295 (316)
56 2xzm_R RACK1; ribosome, transl 100.0 3.2E-38 1.1E-42 266.9 36.2 243 68-339 18-283 (343)
57 2pbi_B Guanine nucleotide-bind 100.0 4.9E-38 1.7E-42 266.7 37.4 244 16-284 105-354 (354)
58 3frx_A Guanine nucleotide-bind 100.0 3.3E-38 1.1E-42 264.1 35.2 241 68-339 14-265 (319)
59 3iz6_a 40S ribosomal protein R 100.0 1.7E-39 5.9E-44 278.4 27.9 244 68-339 63-327 (380)
60 1r5m_A SIR4-interacting protei 100.0 9.6E-39 3.3E-43 277.4 32.8 289 16-339 107-423 (425)
61 3mkq_A Coatomer beta'-subunit; 100.0 2.5E-38 8.4E-43 296.9 37.8 283 15-339 11-300 (814)
62 1yfq_A Cell cycle arrest prote 100.0 3.3E-38 1.1E-42 266.5 32.3 276 15-333 9-315 (342)
63 4ggc_A P55CDC, cell division c 100.0 3.7E-37 1.3E-41 257.4 37.8 277 20-339 28-313 (318)
64 2hes_X YDR267CP; beta-propelle 100.0 1.1E-37 3.9E-42 262.0 34.2 250 68-339 11-278 (330)
65 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-38 6.9E-43 274.0 29.9 287 18-339 35-340 (402)
66 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-37 6.1E-42 303.2 38.5 298 14-339 612-1032(1249)
67 4a11_B DNA excision repair pro 100.0 1.1E-36 3.7E-41 263.2 37.4 290 15-339 41-363 (408)
68 3mmy_A MRNA export factor; mRN 100.0 3.9E-37 1.3E-41 262.3 33.8 290 8-336 29-341 (368)
69 3v7d_B Cell division control p 100.0 2.4E-36 8.1E-41 265.8 39.3 274 15-339 119-419 (464)
70 3jrp_A Fusion protein of prote 100.0 6.8E-37 2.3E-41 261.9 34.1 251 68-339 8-285 (379)
71 4ery_A WD repeat-containing pr 100.0 7.9E-37 2.7E-41 255.0 33.1 240 68-339 20-266 (312)
72 4aow_A Guanine nucleotide-bind 100.0 2.6E-36 8.8E-41 254.7 35.2 265 45-339 13-284 (340)
73 3dm0_A Maltose-binding peripla 100.0 1.3E-36 4.4E-41 280.2 34.7 245 68-339 379-630 (694)
74 3jrp_A Fusion protein of prote 100.0 1.5E-36 5E-41 259.8 31.1 251 15-288 9-288 (379)
75 3f3f_A Nucleoporin SEH1; struc 100.0 6.1E-36 2.1E-40 252.8 34.3 253 14-289 8-339 (351)
76 1pgu_A Actin interacting prote 100.0 4.2E-36 1.4E-40 273.1 35.7 279 16-339 159-612 (615)
77 1p22_A F-BOX/WD-repeat protein 100.0 7.5E-36 2.6E-40 260.5 35.8 276 16-339 132-412 (435)
78 3f3f_A Nucleoporin SEH1; struc 100.0 3.8E-36 1.3E-40 254.0 32.4 261 67-339 7-335 (351)
79 1pgu_A Actin interacting prote 100.0 9.9E-36 3.4E-40 270.6 36.3 281 15-339 16-326 (615)
80 3dwl_C Actin-related protein 2 100.0 1.7E-37 5.7E-42 265.9 23.0 247 68-338 8-278 (377)
81 2oaj_A Protein SNI1; WD40 repe 100.0 2.3E-36 7.9E-41 284.2 32.8 245 9-285 9-310 (902)
82 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-35 5E-40 253.1 33.9 245 68-339 5-272 (372)
83 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-35 4.5E-40 279.1 36.2 314 7-339 88-603 (902)
84 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-34 4.4E-39 253.4 38.6 276 8-339 149-440 (445)
85 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-35 9.5E-40 287.7 37.3 289 8-339 647-1072(1249)
86 2xyi_A Probable histone-bindin 100.0 5E-35 1.7E-39 254.8 33.7 260 10-288 121-411 (430)
87 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.8E-34 6.2E-39 252.8 36.9 280 17-338 4-388 (450)
88 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.9E-34 1.7E-38 249.8 39.4 268 15-339 116-389 (445)
89 3zwl_B Eukaryotic translation 100.0 1.8E-34 6.2E-39 245.8 35.7 242 68-339 29-302 (369)
90 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-34 9.6E-39 269.4 38.6 303 7-339 44-384 (814)
91 3k26_A Polycomb protein EED; W 100.0 1.3E-35 4.5E-40 252.7 26.7 264 66-339 13-316 (366)
92 2j04_B YDR362CP, TAU91; beta p 100.0 7.7E-36 2.6E-40 263.9 26.0 249 68-339 130-426 (524)
93 3jro_A Fusion protein of prote 100.0 1.5E-35 5.2E-40 274.8 29.1 251 68-339 6-283 (753)
94 3v7d_B Cell division control p 100.0 1.4E-33 4.8E-38 248.2 37.0 279 7-337 151-459 (464)
95 4aez_A CDC20, WD repeat-contai 100.0 4.9E-34 1.7E-38 246.4 33.1 233 74-339 96-334 (401)
96 3i2n_A WD repeat-containing pr 100.0 3.2E-34 1.1E-38 243.4 31.4 249 68-339 15-289 (357)
97 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-35 6.6E-40 256.1 24.0 265 13-339 11-295 (588)
98 4gga_A P55CDC, cell division c 100.0 9.2E-34 3.2E-38 246.1 34.0 240 16-289 146-397 (420)
99 4gq1_A NUP37; propeller, trans 100.0 3.2E-34 1.1E-38 246.7 30.1 303 12-339 10-387 (393)
100 1sq9_A Antiviral protein SKI8; 100.0 2.4E-34 8.4E-39 247.8 27.7 242 68-339 13-320 (397)
101 3vu4_A KMHSV2; beta-propeller 100.0 3.3E-33 1.1E-37 237.1 33.8 285 14-339 16-334 (355)
102 3gre_A Serine/threonine-protei 100.0 5.1E-35 1.7E-39 255.4 23.2 280 24-339 34-357 (437)
103 3dw8_B Serine/threonine-protei 100.0 1.4E-34 4.8E-39 253.2 26.1 249 68-339 25-371 (447)
104 3jro_A Fusion protein of prote 100.0 2.3E-34 7.9E-39 266.9 28.3 253 14-289 6-287 (753)
105 4e54_B DNA damage-binding prot 100.0 2.6E-34 8.8E-39 250.7 26.6 207 68-289 116-329 (435)
106 3odt_A Protein DOA1; ubiquitin 100.0 6E-33 2E-37 231.3 33.4 233 68-339 15-253 (313)
107 4h5i_A Guanine nucleotide-exch 100.0 1.5E-33 5.3E-38 239.9 30.2 250 16-289 72-345 (365)
108 3bws_A Protein LP49; two-domai 100.0 6.7E-33 2.3E-37 241.7 34.3 288 9-339 114-430 (433)
109 1yfq_A Cell cycle arrest prote 100.0 2.1E-33 7.2E-38 237.1 29.4 245 68-339 8-280 (342)
110 3ei3_B DNA damage-binding prot 100.0 4.1E-33 1.4E-37 239.1 30.9 252 68-339 70-337 (383)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 4.7E-33 1.6E-37 240.4 27.9 249 15-289 79-344 (402)
112 4a11_B DNA excision repair pro 100.0 2.2E-32 7.6E-37 236.2 32.0 282 16-338 98-402 (408)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.2E-32 1.4E-36 237.8 32.0 244 72-339 5-337 (450)
114 3lrv_A PRE-mRNA-splicing facto 100.0 2.4E-32 8.3E-37 230.9 29.0 266 23-337 42-329 (343)
115 4ggc_A P55CDC, cell division c 100.0 2.3E-31 7.7E-36 222.3 34.4 249 7-289 54-317 (318)
116 3vu4_A KMHSV2; beta-propeller 100.0 6.4E-32 2.2E-36 229.2 31.3 230 68-339 16-269 (355)
117 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-31 4.8E-36 233.5 33.3 232 68-339 130-363 (435)
118 2j04_A TAU60, YPL007P, hypothe 100.0 2.9E-32 9.9E-37 236.3 26.0 272 15-329 50-349 (588)
119 4gq1_A NUP37; propeller, trans 100.0 2.8E-32 9.7E-37 234.5 22.8 237 32-288 101-390 (393)
120 3mmy_A MRNA export factor; mRN 100.0 1.1E-30 3.6E-35 222.4 32.4 242 68-339 36-302 (368)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-31 4.1E-36 226.6 24.2 228 78-339 43-290 (343)
122 2w18_A PALB2, fancn, partner a 100.0 4.3E-30 1.5E-34 209.7 32.0 281 20-339 42-355 (356)
123 1l0q_A Surface layer protein; 100.0 1.1E-29 3.8E-34 218.3 35.0 261 32-339 2-273 (391)
124 3bws_A Protein LP49; two-domai 100.0 3.8E-30 1.3E-34 224.2 31.6 285 16-339 59-388 (433)
125 1l0q_A Surface layer protein; 100.0 1.7E-28 5.9E-33 210.9 36.7 247 7-289 21-277 (391)
126 2w18_A PALB2, fancn, partner a 100.0 7.9E-29 2.7E-33 202.3 28.6 253 9-286 77-356 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 9.5E-28 3.3E-32 207.5 26.3 283 18-339 63-385 (415)
128 1nir_A Nitrite reductase; hemo 100.0 8E-26 2.7E-30 201.4 35.4 301 7-339 168-512 (543)
129 1ri6_A Putative isomerase YBHE 100.0 1.3E-25 4.5E-30 189.2 32.6 267 44-339 13-306 (343)
130 3vgz_A Uncharacterized protein 100.0 6.7E-25 2.3E-29 185.7 36.9 288 10-331 33-334 (353)
131 3hfq_A Uncharacterized protein 100.0 3.4E-25 1.2E-29 187.3 33.0 282 33-338 3-314 (347)
132 2ecf_A Dipeptidyl peptidase IV 100.0 3.1E-26 1E-30 212.8 28.6 279 17-339 36-411 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.4E-25 8.2E-30 192.5 31.4 248 32-323 143-410 (415)
134 2ojh_A Uncharacterized protein 99.9 4E-26 1.4E-30 188.1 22.9 253 44-332 20-293 (297)
135 2z3z_A Dipeptidyl aminopeptida 99.9 6E-25 2E-29 203.1 29.4 283 18-339 82-433 (706)
136 1nir_A Nitrite reductase; hemo 99.9 1.8E-24 6.2E-29 192.7 31.0 278 24-339 144-456 (543)
137 1ri6_A Putative isomerase YBHE 99.9 9.5E-24 3.2E-28 177.8 32.5 282 9-323 29-335 (343)
138 2ecf_A Dipeptidyl peptidase IV 99.9 1E-24 3.5E-29 202.5 28.9 282 19-338 110-456 (741)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-25 5.8E-30 207.2 22.8 287 17-339 16-391 (723)
140 3u4y_A Uncharacterized protein 99.9 9.2E-24 3.1E-28 177.3 31.2 275 24-339 4-302 (331)
141 1k32_A Tricorn protease; prote 99.9 2.4E-24 8.1E-29 206.8 29.3 280 14-338 200-499 (1045)
142 1pby_B Quinohemoprotein amine 99.9 1.7E-23 6E-28 175.8 27.7 268 33-339 2-308 (337)
143 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-23 4.1E-28 194.9 29.2 283 19-329 62-428 (723)
144 3scy_A Hypothetical bacterial 99.9 2.3E-22 7.8E-27 170.9 34.7 284 23-339 7-335 (361)
145 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-22 6.8E-27 174.9 31.2 206 19-244 38-279 (434)
146 2ojh_A Uncharacterized protein 99.9 7.8E-23 2.7E-27 168.4 27.2 240 8-277 32-292 (297)
147 1k32_A Tricorn protease; prote 99.9 6.9E-23 2.4E-27 196.7 29.7 270 17-339 295-635 (1045)
148 2z3z_A Dipeptidyl aminopeptida 99.9 3.1E-23 1.1E-27 191.6 25.5 269 18-331 26-376 (706)
149 3o4h_A Acylamino-acid-releasin 99.9 1.2E-22 4E-27 183.6 24.1 262 17-333 21-304 (582)
150 3u4y_A Uncharacterized protein 99.9 2E-21 6.7E-26 163.0 29.1 234 78-339 4-250 (331)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 2.7E-22 9.4E-27 174.0 23.3 204 72-289 37-280 (434)
152 3scy_A Hypothetical bacterial 99.9 2.2E-20 7.5E-25 158.6 34.4 279 16-319 48-360 (361)
153 1jmx_B Amine dehydrogenase; ox 99.9 1.8E-21 6.3E-26 164.2 26.6 278 22-339 4-323 (349)
154 1jof_A Carboxy-CIS,CIS-muconat 99.9 1E-20 3.5E-25 160.9 31.0 281 33-339 3-339 (365)
155 3hfq_A Uncharacterized protein 99.9 1.4E-20 4.8E-25 159.0 30.6 258 14-288 36-318 (347)
156 3vgz_A Uncharacterized protein 99.9 6.9E-21 2.4E-25 161.0 28.1 236 69-339 38-301 (353)
157 1pby_B Quinohemoprotein amine 99.9 1.1E-20 3.8E-25 158.6 26.1 247 7-289 20-312 (337)
158 3pe7_A Oligogalacturonate lyas 99.9 1.3E-20 4.4E-25 161.6 25.7 276 23-338 41-379 (388)
159 1z68_A Fibroblast activation p 99.9 3E-21 1E-25 178.7 21.8 276 20-339 18-389 (719)
160 3o4h_A Acylamino-acid-releasin 99.9 6E-21 2.1E-25 172.4 21.7 230 70-339 20-274 (582)
161 1z68_A Fibroblast activation p 99.9 2.1E-20 7E-25 173.1 25.1 288 19-338 61-440 (719)
162 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.7E-18 9.1E-23 146.0 30.8 246 18-289 40-343 (365)
163 3azo_A Aminopeptidase; POP fam 99.8 7.6E-19 2.6E-23 161.1 27.0 284 16-338 22-364 (662)
164 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-18 3.7E-23 161.9 27.5 250 71-338 16-350 (740)
165 3c5m_A Oligogalacturonate lyas 99.8 3.1E-19 1E-23 153.3 21.8 274 20-338 38-379 (396)
166 4a5s_A Dipeptidyl peptidase 4 99.8 5E-18 1.7E-22 157.4 27.9 241 18-289 17-355 (740)
167 2dg1_A DRP35, lactonase; beta 99.8 1.2E-16 4.1E-21 134.0 30.0 264 18-331 6-300 (333)
168 1jmx_B Amine dehydrogenase; ox 99.8 1.5E-17 5E-22 140.3 24.3 250 7-289 30-327 (349)
169 1q7f_A NHL, brain tumor CG1071 99.8 1.5E-16 5.2E-21 130.4 29.4 240 70-339 28-278 (286)
170 2gop_A Trilobed protease; beta 99.8 1.5E-16 5E-21 134.2 29.3 258 18-338 15-328 (347)
171 3fvz_A Peptidyl-glycine alpha- 99.8 8.9E-16 3E-20 128.5 32.5 248 18-289 24-324 (329)
172 2oiz_A Aromatic amine dehydrog 99.8 2.7E-16 9.4E-21 133.1 29.2 277 7-323 40-360 (361)
173 3pe7_A Oligogalacturonate lyas 99.8 2.9E-17 9.8E-22 140.7 23.0 230 77-339 41-327 (388)
174 1q7f_A NHL, brain tumor CG1071 99.8 3E-16 1E-20 128.6 27.9 241 18-289 30-282 (286)
175 3fvz_A Peptidyl-glycine alpha- 99.8 2.6E-16 8.8E-21 131.7 27.0 239 71-339 23-320 (329)
176 3azo_A Aminopeptidase; POP fam 99.8 6.5E-17 2.2E-21 148.3 22.7 232 22-286 81-366 (662)
177 2xdw_A Prolyl endopeptidase; a 99.7 4.4E-15 1.5E-19 137.1 31.2 277 27-339 81-412 (710)
178 2z2n_A Virginiamycin B lyase; 99.7 5.1E-14 1.8E-18 115.8 33.4 273 18-338 15-292 (299)
179 3c5m_A Oligogalacturonate lyas 99.7 1E-16 3.5E-21 137.5 17.0 232 73-339 37-327 (396)
180 1rwi_B Serine/threonine-protei 99.7 5E-15 1.7E-19 120.2 25.5 238 19-289 25-266 (270)
181 1qks_A Cytochrome CD1 nitrite 99.7 3.7E-13 1.3E-17 119.9 39.0 304 6-338 185-535 (567)
182 1rwi_B Serine/threonine-protei 99.7 5.4E-15 1.9E-19 120.0 24.6 234 73-339 25-262 (270)
183 2bkl_A Prolyl endopeptidase; m 99.7 1.2E-15 4E-20 140.6 23.0 278 25-339 75-395 (695)
184 2oiz_A Aromatic amine dehydrog 99.7 1.1E-14 3.9E-19 123.2 27.3 273 32-339 15-332 (361)
185 3e5z_A Putative gluconolactona 99.7 1.7E-14 5.8E-19 118.8 27.2 227 69-335 25-281 (296)
186 3dsm_A Uncharacterized protein 99.7 2.8E-14 9.6E-19 119.2 28.7 258 44-339 15-300 (328)
187 3e5z_A Putative gluconolactona 99.7 3.3E-14 1.1E-18 117.0 28.7 235 17-289 27-286 (296)
188 2xdw_A Prolyl endopeptidase; a 99.7 1.6E-14 5.3E-19 133.5 28.9 247 19-289 126-416 (710)
189 2dg1_A DRP35, lactonase; beta 99.7 2.3E-14 7.9E-19 120.0 27.3 238 71-338 5-260 (333)
190 2bkl_A Prolyl endopeptidase; m 99.7 2E-15 6.8E-20 139.0 20.9 246 19-289 122-399 (695)
191 1qks_A Cytochrome CD1 nitrite 99.7 2.7E-13 9.1E-18 120.7 32.7 272 32-339 167-475 (567)
192 2gop_A Trilobed protease; beta 99.7 3E-14 1E-18 120.0 24.2 225 18-286 59-330 (347)
193 2qc5_A Streptogramin B lactona 99.7 1.2E-12 4.1E-17 107.7 32.4 273 18-338 20-297 (300)
194 1yr2_A Prolyl oligopeptidase; 99.7 5.7E-14 1.9E-18 130.3 26.7 277 26-339 115-439 (741)
195 3dsm_A Uncharacterized protein 99.7 2.5E-13 8.5E-18 113.5 28.1 241 18-289 44-303 (328)
196 3no2_A Uncharacterized protein 99.6 7E-13 2.4E-17 107.7 26.9 227 32-289 5-253 (276)
197 2z2n_A Virginiamycin B lyase; 99.6 2.4E-12 8.2E-17 105.8 30.1 234 70-338 13-252 (299)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.9E-12 6.5E-17 107.3 28.9 236 71-339 17-297 (314)
199 3hrp_A Uncharacterized protein 99.6 9.2E-13 3.2E-17 113.2 27.5 234 73-339 132-408 (409)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.6E-12 9E-17 106.4 29.4 248 18-289 18-301 (314)
201 1xip_A Nucleoporin NUP159; bet 99.6 9.5E-14 3.2E-18 116.9 18.5 173 73-275 39-232 (388)
202 1yr2_A Prolyl oligopeptidase; 99.6 1.1E-12 3.8E-17 121.7 26.4 248 19-289 164-443 (741)
203 3g4e_A Regucalcin; six bladed 99.6 9E-12 3.1E-16 102.5 28.4 233 19-276 14-262 (297)
204 2mad_H Methylamine dehydrogena 99.6 5.6E-11 1.9E-15 100.7 32.9 274 25-339 28-348 (373)
205 3no2_A Uncharacterized protein 99.5 5.1E-12 1.7E-16 102.6 24.2 210 89-328 6-230 (276)
206 1xip_A Nucleoporin NUP159; bet 99.5 6.6E-13 2.2E-17 111.8 18.8 177 19-229 39-231 (388)
207 3sjl_D Methylamine dehydrogena 99.5 1.1E-11 3.7E-16 104.0 25.5 282 22-339 37-361 (386)
208 2qc5_A Streptogramin B lactona 99.5 5E-11 1.7E-15 97.9 29.3 234 71-338 19-257 (300)
209 3g4e_A Regucalcin; six bladed 99.5 4.5E-11 1.5E-15 98.3 27.2 223 72-329 13-260 (297)
210 2qe8_A Uncharacterized protein 99.5 1.2E-11 3.9E-16 104.0 23.6 275 9-330 10-310 (343)
211 2ghs_A AGR_C_1268P; regucalcin 99.5 1.8E-10 6E-15 96.1 30.3 229 20-277 51-293 (326)
212 3sjl_D Methylamine dehydrogena 99.5 3.9E-11 1.3E-15 100.6 25.1 276 7-321 68-384 (386)
213 3iuj_A Prolyl endopeptidase; h 99.5 2.3E-11 7.8E-16 111.9 24.6 238 69-338 126-402 (693)
214 2mad_H Methylamine dehydrogena 99.5 4.7E-10 1.6E-14 95.0 30.9 253 7-289 56-352 (373)
215 2ghs_A AGR_C_1268P; regucalcin 99.4 4.1E-10 1.4E-14 93.9 28.7 218 74-329 51-290 (326)
216 3c75_H MADH, methylamine dehyd 99.4 7.4E-11 2.5E-15 100.7 24.3 272 32-339 84-400 (426)
217 3hrp_A Uncharacterized protein 99.4 3.4E-10 1.2E-14 97.2 28.5 235 18-286 131-409 (409)
218 3dr2_A Exported gluconolactona 99.4 3.5E-10 1.2E-14 93.3 25.6 225 69-336 42-302 (305)
219 3dr2_A Exported gluconolactona 99.4 3.4E-10 1.2E-14 93.4 25.4 226 17-278 44-298 (305)
220 3c75_H MADH, methylamine dehyd 99.3 7.5E-10 2.6E-14 94.5 24.5 256 6-289 107-404 (426)
221 3iuj_A Prolyl endopeptidase; h 99.3 4.8E-10 1.6E-14 103.1 24.7 243 18-289 129-407 (693)
222 2ece_A 462AA long hypothetical 99.3 1.3E-08 4.4E-13 86.2 29.9 227 81-329 93-399 (462)
223 1mda_H Methylamine dehydrogena 99.2 1.2E-09 4.2E-14 91.7 19.6 249 6-289 54-348 (368)
224 2ece_A 462AA long hypothetical 99.2 3.5E-08 1.2E-12 83.6 27.1 231 27-275 93-399 (462)
225 1npe_A Nidogen, entactin; glyc 99.2 2.7E-07 9.3E-12 74.3 30.2 253 33-323 2-263 (267)
226 1mda_H Methylamine dehydrogena 99.2 5.5E-09 1.9E-13 87.7 20.5 253 47-339 47-344 (368)
227 1yiq_A Quinohemoprotein alcoho 99.2 4.4E-08 1.5E-12 89.7 28.0 181 128-327 239-534 (689)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.2 6.5E-08 2.2E-12 82.2 26.7 257 32-338 103-375 (376)
229 1kb0_A Quinohemoprotein alcoho 99.1 6.5E-08 2.2E-12 88.4 27.3 182 128-328 247-537 (677)
230 2iwa_A Glutamine cyclotransfer 99.1 7E-08 2.4E-12 76.7 23.2 204 68-289 15-239 (266)
231 3hxj_A Pyrrolo-quinoline quino 99.1 1.3E-09 4.4E-14 90.8 13.8 234 7-285 8-242 (330)
232 2qe8_A Uncharacterized protein 99.1 2E-08 6.8E-13 84.2 20.9 207 124-338 17-275 (343)
233 1npe_A Nidogen, entactin; glyc 99.1 3E-07 1E-11 74.1 26.5 223 90-338 4-235 (267)
234 3hxj_A Pyrrolo-quinoline quino 99.1 3.4E-08 1.2E-12 82.1 21.6 210 89-338 109-321 (330)
235 2iwa_A Glutamine cyclotransfer 99.1 4.8E-07 1.6E-11 72.0 26.1 189 126-338 23-234 (266)
236 2hz6_A Endoplasmic reticulum t 99.0 5.8E-11 2E-15 100.6 2.1 177 135-338 8-189 (369)
237 4a2l_A BT_4663, two-component 99.0 6.1E-06 2.1E-10 77.2 34.8 283 18-338 215-523 (795)
238 1k3i_A Galactose oxidase precu 99.0 1.4E-07 4.8E-12 86.2 23.2 281 20-330 188-530 (656)
239 2hz6_A Endoplasmic reticulum t 99.0 3.8E-10 1.3E-14 95.7 5.3 179 89-289 10-194 (369)
240 3nol_A Glutamine cyclotransfer 99.0 4.8E-07 1.6E-11 71.1 22.1 195 8-232 31-245 (262)
241 3v64_C Agrin; beta propeller, 99.0 4E-06 1.4E-10 70.3 28.8 199 72-289 34-236 (349)
242 1fwx_A Nitrous oxide reductase 98.9 5.5E-07 1.9E-11 79.1 23.8 192 75-287 88-361 (595)
243 3v65_B Low-density lipoprotein 98.9 2.9E-06 1E-10 72.1 28.0 197 74-289 79-279 (386)
244 1kb0_A Quinohemoprotein alcoho 98.9 3.7E-07 1.3E-11 83.5 23.6 227 89-339 130-505 (677)
245 3mbr_X Glutamine cyclotransfer 98.9 1.1E-06 3.8E-11 68.5 22.2 197 6-229 7-222 (243)
246 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.3E-06 7.9E-11 72.5 26.4 227 32-289 53-298 (376)
247 2p4o_A Hypothetical protein; p 98.9 3.3E-06 1.1E-10 69.5 26.3 233 7-276 21-277 (306)
248 1ijq_A LDL receptor, low-densi 98.9 9.6E-06 3.3E-10 67.0 28.8 187 89-289 3-197 (316)
249 3nol_A Glutamine cyclotransfer 98.9 3.6E-07 1.2E-11 71.9 18.7 185 68-274 37-243 (262)
250 3mbr_X Glutamine cyclotransfer 98.9 2.4E-06 8.2E-11 66.6 23.1 188 68-275 15-223 (243)
251 3nok_A Glutaminyl cyclase; bet 98.9 5.9E-07 2E-11 70.7 19.6 181 125-330 56-254 (268)
252 4a2l_A BT_4663, two-component 98.9 2.9E-05 1E-09 72.6 34.3 278 20-338 175-477 (795)
253 1yiq_A Quinohemoprotein alcoho 98.9 1.5E-06 5.2E-11 79.6 24.7 151 89-248 123-342 (689)
254 3nok_A Glutaminyl cyclase; bet 98.8 6E-06 2.1E-10 65.0 24.0 189 9-229 44-253 (268)
255 2p4o_A Hypothetical protein; p 98.8 2.8E-05 9.6E-10 63.8 29.7 227 71-329 31-276 (306)
256 2fp8_A Strictosidine synthase; 98.8 7.2E-06 2.5E-10 67.9 25.2 244 18-289 19-315 (322)
257 2fp8_A Strictosidine synthase; 98.8 1.3E-05 4.4E-10 66.4 26.7 238 72-339 19-311 (322)
258 3v65_B Low-density lipoprotein 98.8 5E-05 1.7E-09 64.5 30.7 221 45-289 95-320 (386)
259 3v64_C Agrin; beta propeller, 98.7 6.7E-05 2.3E-09 62.8 31.9 239 18-289 34-277 (349)
260 3p5b_L Low density lipoprotein 98.7 7E-05 2.4E-09 63.9 29.6 187 89-289 85-279 (400)
261 3qqz_A Putative uncharacterize 98.7 4.6E-05 1.6E-09 60.2 27.7 200 124-338 27-250 (255)
262 2xe4_A Oligopeptidase B; hydro 98.7 1.9E-05 6.4E-10 73.3 27.1 249 19-288 175-459 (751)
263 3sov_A LRP-6, low-density lipo 98.7 6.2E-05 2.1E-09 62.1 26.5 187 90-289 6-199 (318)
264 3v9f_A Two-component system se 98.6 0.00019 6.5E-09 67.0 32.1 283 19-338 164-475 (781)
265 3qqz_A Putative uncharacterize 98.6 6.8E-05 2.3E-09 59.2 24.0 198 69-283 24-249 (255)
266 3v9f_A Two-component system se 98.6 0.00025 8.5E-09 66.2 31.7 281 18-337 211-520 (781)
267 1kv9_A Type II quinohemoprotei 98.6 3.4E-05 1.2E-09 70.5 24.6 156 128-289 234-490 (668)
268 2xe4_A Oligopeptidase B; hydro 98.6 2.3E-05 7.8E-10 72.7 23.1 194 125-337 175-394 (751)
269 2ad6_A Methanol dehydrogenase 98.5 8.4E-05 2.9E-09 66.5 25.5 137 147-289 273-496 (571)
270 1fwx_A Nitrous oxide reductase 98.5 1.2E-05 4.3E-10 70.6 19.5 196 135-339 100-359 (595)
271 1kv9_A Type II quinohemoprotei 98.5 4E-05 1.4E-09 70.0 23.4 150 89-248 119-337 (668)
272 4hw6_A Hypothetical protein, I 98.5 0.0002 6.8E-09 61.8 26.5 247 73-338 140-430 (433)
273 3tc9_A Hypothetical hydrolase; 98.5 0.00024 8.2E-09 61.2 27.1 153 73-243 138-301 (430)
274 4a0p_A LRP6, LRP-6, low-densit 98.5 0.00036 1.2E-08 63.1 29.1 189 89-289 8-199 (628)
275 1w6s_A Methanol dehydrogenase 98.5 0.00018 6.1E-09 64.5 26.6 71 129-201 246-347 (599)
276 3m0c_C LDL receptor, low-densi 98.4 0.00056 1.9E-08 63.4 28.4 186 90-289 397-591 (791)
277 2xbg_A YCF48-like protein; pho 98.4 0.0005 1.7E-08 56.9 31.7 276 16-337 34-318 (327)
278 1ijq_A LDL receptor, low-densi 98.4 0.0005 1.7E-08 56.6 31.1 227 34-289 3-240 (316)
279 3p5b_L Low density lipoprotein 98.4 0.00066 2.2E-08 57.9 34.0 229 33-289 84-322 (400)
280 3m0c_C LDL receptor, low-densi 98.4 0.0014 4.8E-08 60.7 31.0 229 34-289 397-634 (791)
281 3tc9_A Hypothetical hydrolase; 98.4 0.0009 3.1E-08 57.6 27.6 239 19-286 138-429 (430)
282 3sov_A LRP-6, low-density lipo 98.4 0.00068 2.3E-08 55.8 28.9 230 34-289 6-240 (318)
283 1k3i_A Galactose oxidase precu 98.3 9.5E-06 3.3E-10 74.1 14.8 228 22-276 247-530 (656)
284 1flg_A Protein (quinoprotein e 98.3 0.0022 7.5E-08 57.5 32.0 163 146-327 291-545 (582)
285 1n7d_A LDL receptor, low-densi 98.2 7.7E-06 2.7E-10 75.0 11.8 185 90-289 380-573 (699)
286 2ad6_A Methanol dehydrogenase 98.2 0.0013 4.6E-08 58.8 25.8 151 89-251 117-342 (571)
287 2ism_A Putative oxidoreductase 98.2 0.0015 5.3E-08 54.5 26.5 236 72-329 31-333 (352)
288 3amr_A 3-phytase; beta-propell 98.2 0.00058 2E-08 56.2 21.2 190 135-339 39-261 (355)
289 4hw6_A Hypothetical protein, I 98.2 0.0024 8.1E-08 55.0 26.5 239 19-286 140-432 (433)
290 3kya_A Putative phosphatase; s 98.2 0.0026 8.9E-08 55.3 27.5 251 74-338 141-472 (496)
291 1w6s_A Methanol dehydrogenase 98.2 0.0034 1.2E-07 56.3 26.4 152 90-251 124-349 (599)
292 3ei3_A DNA damage-binding prot 98.1 0.0073 2.5E-07 58.5 29.9 190 136-337 844-1058(1158)
293 2xbg_A YCF48-like protein; pho 98.1 0.0026 8.9E-08 52.6 28.5 231 18-285 80-320 (327)
294 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0075 2.6E-07 54.5 32.5 228 33-289 7-239 (628)
295 3s94_A LRP-6, low-density lipo 98.0 0.0082 2.8E-07 54.2 27.1 160 124-289 349-512 (619)
296 1n7d_A LDL receptor, low-densi 98.0 0.00021 7.2E-09 65.5 15.4 221 18-264 406-634 (699)
297 2xzh_A Clathrin heavy chain 1; 98.0 0.0045 1.5E-07 50.2 28.5 240 22-289 71-334 (365)
298 2p9w_A MAL S 1 allergenic prot 98.0 0.0024 8.4E-08 52.0 19.7 157 126-287 15-215 (334)
299 2xn4_A Kelch-like protein 2; s 98.0 0.0042 1.4E-07 50.6 21.6 231 32-289 16-278 (302)
300 3sre_A PON1, serum paraoxonase 97.9 0.0053 1.8E-07 51.0 21.1 188 126-330 52-286 (355)
301 2p9w_A MAL S 1 allergenic prot 97.9 0.0077 2.6E-07 49.1 22.1 209 70-289 11-267 (334)
302 3s94_A LRP-6, low-density lipo 97.8 0.016 5.3E-07 52.4 32.0 270 18-326 127-450 (619)
303 2vpj_A Kelch-like protein 12; 97.8 0.0079 2.7E-07 48.9 21.6 232 32-289 15-280 (301)
304 3a9g_A Putative uncharacterize 97.8 0.0099 3.4E-07 49.7 27.2 236 72-329 29-330 (354)
305 1bpo_A Protein (clathrin); cla 97.8 0.013 4.4E-07 49.5 29.1 240 22-289 70-333 (494)
306 2ism_A Putative oxidoreductase 97.8 0.013 4.4E-07 48.9 22.4 233 18-275 31-333 (352)
307 1flg_A Protein (quinoprotein e 97.7 0.022 7.6E-07 51.0 27.2 63 187-252 291-363 (582)
308 3ii7_A Kelch-like protein 7; p 97.7 0.011 3.8E-07 48.1 20.0 228 32-289 12-274 (306)
309 1zgk_A Kelch-like ECH-associat 97.6 0.01 3.5E-07 48.4 19.2 231 32-289 25-289 (308)
310 3ii7_A Kelch-like protein 7; p 97.6 0.018 6.1E-07 46.9 21.3 183 89-289 13-227 (306)
311 3kya_A Putative phosphatase; s 97.6 0.029 1E-06 48.8 27.7 245 19-289 140-477 (496)
312 2vpj_A Kelch-like protein 12; 97.6 0.015 5.2E-07 47.1 19.6 184 89-289 16-233 (301)
313 4asc_A Kelch repeat and BTB do 97.4 0.037 1.3E-06 45.2 20.1 185 89-289 6-223 (315)
314 2uvk_A YJHT; unknown function, 97.4 0.041 1.4E-06 45.8 22.3 234 32-289 20-344 (357)
315 3pbp_A Nucleoporin NUP82; beta 97.4 0.037 1.3E-06 46.7 19.1 146 32-192 32-208 (452)
316 3sre_A PON1, serum paraoxonase 97.4 0.044 1.5E-06 45.5 20.1 141 185-339 81-250 (355)
317 4asc_A Kelch repeat and BTB do 97.4 0.041 1.4E-06 45.0 20.9 133 98-243 69-221 (315)
318 2xn4_A Kelch-like protein 2; s 97.3 0.042 1.4E-06 44.5 20.1 184 89-289 17-231 (302)
319 3amr_A 3-phytase; beta-propell 97.3 0.049 1.7E-06 44.9 22.1 182 90-287 43-263 (355)
320 3pbp_A Nucleoporin NUP82; beta 97.3 0.029 9.8E-07 47.4 17.4 153 176-335 31-206 (452)
321 2xzh_A Clathrin heavy chain 1; 97.3 0.049 1.7E-06 44.3 28.4 249 45-335 48-326 (365)
322 3ei3_A DNA damage-binding prot 97.3 0.16 5.5E-06 49.4 33.2 172 147-338 808-996 (1158)
323 1xi4_A Clathrin heavy chain; a 97.2 0.048 1.6E-06 53.2 19.5 238 24-289 72-333 (1630)
324 1zgk_A Kelch-like ECH-associat 97.0 0.099 3.4E-06 42.5 17.7 142 89-243 123-287 (308)
325 2g8s_A Glucose/sorbosone dehyd 96.9 0.15 5E-06 42.5 27.4 235 73-328 19-340 (353)
326 2woz_A Kelch repeat and BTB do 96.9 0.13 4.5E-06 42.0 22.8 184 32-243 16-231 (318)
327 1bpo_A Protein (clathrin); cla 96.7 0.23 7.7E-06 42.2 28.7 250 44-335 46-325 (494)
328 3a9g_A Putative uncharacterize 96.7 0.2 7E-06 41.6 24.7 232 18-275 29-330 (354)
329 2zwa_A Leucine carboxyl methyl 96.7 0.17 5.8E-06 46.4 18.5 198 89-289 399-637 (695)
330 2woz_A Kelch repeat and BTB do 96.6 0.21 7.1E-06 40.7 20.4 184 89-289 17-233 (318)
331 1xi4_A Clathrin heavy chain; a 96.6 0.66 2.3E-05 45.7 23.5 193 76-289 70-291 (1630)
332 2uvk_A YJHT; unknown function, 96.6 0.26 8.9E-06 40.9 19.5 142 89-241 21-224 (357)
333 1tl2_A L10, protein (tachylect 96.0 0.13 4.5E-06 39.2 11.2 147 124-289 41-210 (236)
334 2zwa_A Leucine carboxyl methyl 95.8 0.98 3.4E-05 41.4 18.4 196 32-243 398-635 (695)
335 3das_A Putative oxidoreductase 95.5 0.89 3.1E-05 37.6 25.7 231 18-275 32-326 (347)
336 3s25_A Hypothetical 7-bladed b 95.4 0.88 3E-05 36.8 16.4 136 135-289 24-178 (302)
337 3b7f_A Glycosyl hydrolase, BNR 95.4 1.1 3.7E-05 37.8 26.8 153 124-280 177-365 (394)
338 3das_A Putative oxidoreductase 95.1 1.2 4E-05 36.8 29.2 239 71-329 31-326 (347)
339 3ott_A Two-component system se 94.9 2.4 8.3E-05 39.2 31.4 233 17-289 21-262 (758)
340 1cru_A Protein (soluble quinop 94.8 1.8 6.2E-05 37.3 22.0 106 167-275 27-162 (454)
341 1cru_A Protein (soluble quinop 94.7 1.9 6.4E-05 37.2 20.7 106 124-231 27-163 (454)
342 1tl2_A L10, protein (tachylect 94.1 1.5 5.1E-05 33.5 15.4 141 72-229 41-199 (236)
343 3ott_A Two-component system se 93.9 4 0.00014 37.8 32.7 226 73-337 192-444 (758)
344 2be1_A Serine/threonine-protei 93.2 3 0.0001 34.3 13.4 108 89-202 12-136 (339)
345 2g8s_A Glucose/sorbosone dehyd 92.9 3.5 0.00012 34.1 25.8 243 18-286 18-351 (353)
346 3sbq_A Nitrous-oxide reductase 91.9 3.3 0.00011 36.5 12.4 75 211-288 323-409 (638)
347 2wg3_C Hedgehog-interacting pr 91.1 4.6 0.00016 34.9 12.8 115 211-331 14-159 (463)
348 2be1_A Serine/threonine-protei 89.1 2.4 8.3E-05 34.8 9.0 114 136-252 10-138 (339)
349 3qhy_B Beta-lactamase inhibito 88.5 8.2 0.00028 30.7 23.8 219 72-337 24-242 (282)
350 3s25_A Hypothetical 7-bladed b 86.9 11 0.00037 30.4 25.3 138 130-287 110-255 (302)
351 3b7f_A Glycosyl hydrolase, BNR 86.3 13 0.00046 30.9 29.5 239 32-288 22-321 (394)
352 1sqj_A OXG-RCBH, oligoxylogluc 84.5 26 0.00089 32.6 22.7 150 124-277 15-190 (789)
353 2cn3_A Xyloglucanase, beta-1,4 81.0 34 0.0012 31.5 21.9 162 125-289 24-231 (737)
354 2cn3_A Xyloglucanase, beta-1,4 80.2 37 0.0013 31.3 29.6 112 19-145 24-153 (737)
355 3sbq_A Nitrous-oxide reductase 78.2 8.6 0.00029 34.0 7.8 101 236-339 300-406 (638)
356 4hvt_A Ritya.17583.B, post-pro 76.0 48 0.0016 30.4 21.2 201 126-336 131-374 (711)
357 4hvt_A Ritya.17583.B, post-pro 74.7 52 0.0018 30.2 25.4 244 21-286 132-429 (711)
358 3q6k_A 43.2 kDa salivary prote 74.0 38 0.0013 28.3 20.4 138 147-287 124-306 (381)
359 3kci_A Probable E3 ubiquitin-p 68.8 50 0.0017 27.5 22.4 200 125-337 54-289 (389)
360 1sqj_A OXG-RCBH, oligoxylogluc 68.1 78 0.0027 29.5 24.0 154 17-186 14-190 (789)
361 4gq2_M Nucleoporin NUP120; bet 66.7 92 0.0031 29.8 15.7 38 211-251 236-273 (950)
362 3zwu_A Alkaline phosphatase PH 62.9 22 0.00074 31.8 7.2 58 259-328 479-548 (592)
363 4gq2_M Nucleoporin NUP120; bet 59.9 19 0.00064 34.4 6.7 38 124-162 236-273 (950)
364 3qhy_B Beta-lactamase inhibito 57.7 68 0.0023 25.3 26.0 208 45-289 41-248 (282)
365 2wg3_C Hedgehog-interacting pr 57.4 93 0.0032 26.8 29.9 111 73-186 15-159 (463)
366 3f7f_A Nucleoporin NUP120; nuc 55.9 33 0.0011 31.4 7.2 37 124-163 222-258 (729)
367 1suu_A DNA gyrase subunit A; t 49.7 1E+02 0.0034 24.8 21.0 195 135-338 7-228 (312)
368 4fhn_B Nucleoporin NUP120; pro 46.6 19 0.00067 35.1 4.6 37 125-162 239-275 (1139)
369 4a9v_A PHOX; hydrolase, beta-p 46.5 65 0.0022 28.7 7.3 19 310-328 530-548 (592)
370 4fhn_B Nucleoporin NUP120; pro 44.8 47 0.0016 32.5 7.0 33 170-202 241-274 (1139)
371 3kci_A Probable E3 ubiquitin-p 38.1 1.7E+02 0.0059 24.2 29.8 201 125-337 106-341 (389)
372 3kvp_A Uncharacterized protein 37.8 62 0.0021 19.0 3.9 26 32-62 29-54 (72)
373 3f7f_A Nucleoporin NUP120; nuc 35.8 56 0.0019 29.9 5.5 33 169-202 224-256 (729)
374 4d9s_A UVB-resistance protein 30.3 2.4E+02 0.0081 23.5 34.6 199 125-337 122-353 (406)
375 3uc1_A DNA gyrase subunit A; D 28.6 2.3E+02 0.008 22.9 19.3 200 124-332 95-321 (327)
376 4a9v_A PHOX; hydrolase, beta-p 28.0 2.3E+02 0.0079 25.3 7.8 62 18-84 476-543 (592)
377 3zwu_A Alkaline phosphatase PH 26.7 1.7E+02 0.006 26.1 7.0 60 20-84 478-543 (592)
378 3a0f_A Xyloglucanase; beta-pro 24.5 4.2E+02 0.014 24.4 25.6 159 124-287 21-211 (763)
379 1q47_A Semaphorin 3A; beta pro 24.3 2.5E+02 0.0086 24.4 7.4 70 212-282 405-487 (495)
380 1q47_A Semaphorin 3A; beta pro 24.2 3.5E+02 0.012 23.5 8.9 78 257-336 405-487 (495)
381 3q6k_A 43.2 kDa salivary prote 21.1 3.6E+02 0.012 22.4 20.8 173 97-274 124-341 (381)
No 1
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.5e-50 Score=338.96 Aligned_cols=294 Identities=16% Similarity=0.217 Sum_probs=237.7
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccc--cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLED--YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
.|...|.+++|||| |++||+|+.... -|+.|++|+............. ...|...|.+++|+|++ .+++
T Consensus 40 ~H~~~V~~v~fSpD---G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~s~d~-----~~l~ 110 (357)
T 4g56_B 40 CMEVQIGAVRYRRD---GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GVQTEAGVTDVAWVSEK-----GILV 110 (357)
T ss_dssp CCCSEEEEEEECSS---SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EEECSSCEEEEEEETTT-----EEEE
T ss_pred cccCCEEEEEECCC---CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cCCCCCCEEEEEEcCCC-----CEEE
Confidence 36788999999999 999999982000 0677888665443322222112 25789999999999998 7888
Q ss_pred EeCC-cEEEEeecCCcceeE--EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCce
Q 040307 93 TSGD-SLRLWEIHDDRTELK--SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREV 169 (339)
Q Consensus 93 ~~~~-~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v 169 (339)
++.+ +|+|||+.+++.... ....+|. ..|++++|+| ++++|++|+.|+.|++||+++++.+..+.+|...|
T Consensus 111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-----~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 111 ASDSGAVELWEILEKESLLVNKFAKYEHD-----DIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp EETTSCEEEC--------CCCCEEECCCS-----SCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EECCCEEEEeeccccceeEEEeeccCCCC-----CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 7777 999999988762222 2334566 8999999998 99999999999999999999999999999999999
Q ss_pred eEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307 170 YDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247 (339)
Q Consensus 170 ~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~ 247 (339)
++++|+ + ..++++++.|+.|++||+++++...... ...+...+.+++|+|.++.+|++|+.|+. |++||++. .++
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~-~~~ 261 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKN-PDS 261 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSC-GGG
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-eccccccccchhhhhcccceEEEeecccc-eeEEECCC-CcE
Confidence 999999 4 4589999999999999999887544432 23456789999999977889999999999 99999987 667
Q ss_pred eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC-CCCceE
Q 040307 248 VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP-LELDWI 326 (339)
Q Consensus 248 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~ 326 (339)
+..+.+|...|++++|+|+++++|++++.|++|+|||++..+ .+...+|...|++++|+| ++..|+
T Consensus 262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-------------~~~~~~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE-------------VFRDLSHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE-------------EEEECCCSSCEEEEEECSSSTTEEE
T ss_pred eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc-------------EeEECCCCCCEEEEEEeCCCCCEEE
Confidence 889999999999999999986789999999999999998876 566678999999999999 677788
Q ss_pred EEecCCeEEEEeC
Q 040307 327 AIAFVNKLQLLKV 339 (339)
Q Consensus 327 ~~~~d~~v~~w~v 339 (339)
+++.|++|++|++
T Consensus 329 s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 329 TVGWDHKVLHHHL 341 (357)
T ss_dssp EEETTSCEEEEEC
T ss_pred EEcCCCeEEEEEC
Confidence 8999999999986
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=335.14 Aligned_cols=289 Identities=15% Similarity=0.186 Sum_probs=235.0
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEec-----CCCCC-cccceeeEeecCCCCceEEEEcCCCCCCCCC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNF-----NPETS-DFSADNRLIFDHPYTPTNIAFFPSEETLNPD 89 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~-----~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 89 (339)
++..|.+++|+|| |++|++++ |+++++|+. +.... ...........+...|.+++|+|++ .
T Consensus 29 ~~~~v~~~~fs~d---G~~l~~~s-----d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-----~ 95 (344)
T 4gqb_B 29 MERQLEAARYRSD---GALLLGAS-----SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-----G 95 (344)
T ss_dssp CCSEEEEEEECTT---SCEEEEEE-----CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-----E
T ss_pred ccCCEEEEEECCC---CCEEEEEe-----CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-----e
Confidence 4567999999999 99999887 677777542 11110 0000001124567889999999987 6
Q ss_pred eEEEeCC-cEEEEeecCCccee--EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 90 IVATSGD-SLRLWEIHDDRTEL--KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 90 ~la~~~~-~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
+++++.| +|+|||+++++... ...+.+|. ..|++++|+| ++++|++|+.|++|++||+++++.+..+.+|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~-----~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHD-----DIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCC-----CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 6655556 99999999886322 23345677 8999999998 99999999999999999999999999999999
Q ss_pred CceeEEEec-CC-cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 167 REVYDISWG-GF-NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 167 ~~v~~~~~~-~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
..|++++|+ ++ .+|++++.|+.|++||+++++....+.. ..+...+.+++|+|.++++|++|+.|+. |++||++.
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~- 246 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKS- 246 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC-
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCc-EEEEECCC-
Confidence 999999999 44 5889999999999999999875554332 2345678999999978889999999998 99999997
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 324 (339)
.+++..+.+|...|++++|+|++.++|++|+.|++|+|||+...+ .....+|...|++++|+|+++.
T Consensus 247 ~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-------------~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 247 TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-------------LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp --CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-------------EEEECCCSSCEEEEEECSSSTT
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-------------EEEEcCCCCCEEEEEEeCCCCe
Confidence 678899999999999999999986689999999999999998766 5667789999999999999987
Q ss_pred eE-EEecCCeEEEEeC
Q 040307 325 WI-AIAFVNKLQLLKV 339 (339)
Q Consensus 325 l~-~~~~d~~v~~w~v 339 (339)
++ +++.|++|++|++
T Consensus 314 llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEEEETTSCEEEEEC
T ss_pred EEEEEcCCCeEEEEEC
Confidence 66 6789999999986
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-48 Score=337.38 Aligned_cols=283 Identities=15% Similarity=0.215 Sum_probs=250.5
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..|..+|++++|+|+ +.+|++|+ .|+.|+||++....... .+ .+|.+.|.+++|+|++ .+|++
T Consensus 105 ~gh~~~V~~~~~~p~---~~~l~s~s----~Dg~i~vwd~~~~~~~~----~l-~~h~~~V~~v~~~~~~-----~~l~s 167 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPV---FSVMVSAS----EDATIKVWDYETGDFER----TL-KGHTDSVQDISFDHSG-----KLLAS 167 (410)
T ss_dssp ECCSSCEEEEEECSS---SSEEEEEE----SSSCEEEEETTTCCCCE----EE-CCCSSCEEEEEECTTS-----SEEEE
T ss_pred cccCCcEEEEEEcCC---CCEEEEEe----CCCeEEEEECCCCcEEE----EE-eccCCcEEEEEEcCCC-----CEEEE
Confidence 357899999999999 99999999 79999998876543322 23 6899999999999999 89998
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
|+ | +|++||+.+.+ ++..+.+|. ..|.+++|+| ++++|++|+.|++|++||++++.++..+.+|...|.+
T Consensus 168 gs~D~~i~iwd~~~~~--~~~~~~~h~-----~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFE--CIRTMHGHD-----HNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239 (410)
T ss_dssp EETTSCCCEEETTSSC--EEECCCCCS-----SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EeCCCeEEEEeCCCCc--eeEEEcCCC-----CCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence 87 5 99999998876 788888888 8999999998 9999999999999999999999999999999999999
Q ss_pred EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC-------------------CCeEEEEee
Q 040307 172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD-------------------PRFMATVGM 231 (339)
Q Consensus 172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------------~~~l~~~~~ 231 (339)
+.++ ++.+|++++.|+.|++||+++.+....+ . .|...|.+++|+|.. +.+|++|+.
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~-~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL-R--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-C--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeEe-c--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 9999 7999999999999999999988754433 2 367899999999832 678999999
Q ss_pred CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccc
Q 040307 232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA 311 (339)
Q Consensus 232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (339)
|+. |++||++. +.++..+.+|...|.+++|+|++ .+|++++.|+.|++||+.... .......|..
T Consensus 317 D~~-i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~------------~~~~~~~h~~ 381 (410)
T 1vyh_C 317 DKT-IKMWDVST-GMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR------------CMKTLNAHEH 381 (410)
T ss_dssp TSE-EEEEETTT-TEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC------------CCEEEECCSS
T ss_pred CCe-EEEEECCC-CceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc------------eEEEEcCCCC
Confidence 999 99999987 66788999999999999999999 699999999999999998766 2345568999
Q ss_pred eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 312 EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.|++++|+|+++++++++.|++|++|++
T Consensus 382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999999999999985
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-48 Score=325.19 Aligned_cols=286 Identities=16% Similarity=0.273 Sum_probs=247.4
Q ss_pred eccCCeeEEEeeecC-CcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 15 MAQWPISTVAWSVRH-DRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~-~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.|.++|.+++|+|+. .++.+|++|+ .|+.|+||++......... .+ .+|...|.+++|++++ .++++
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs----~D~~v~vW~~~~~~~~~~~--~l-~gh~~~v~~~~~~~~~-----~~l~s 97 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGS----LDDLVKVWKWRDERLDLQW--SL-EGHQLGVVSVDISHTL-----PIAAS 97 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEE----TTSCEEEEEEETTEEEEEE--EE-CCCSSCEEEEEECSSS-----SEEEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEc----CCCCEEEEECCCCCeeeee--ee-ccCCCCEEEEEECCCC-----CEEEE
Confidence 488999999999852 1267899999 7999999988754332221 23 6899999999999999 89998
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
++ | +|++||+.+++ .+..+..+. ..+.+++|+| ++++|++++.||.|++||+++++....+..|...|.+
T Consensus 98 ~s~D~~i~lWd~~~~~--~~~~~~~~~-----~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGK--QIKSIDAGP-----VDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp EETTSEEEEEETTTTE--EEEEEECCT-----TCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred EeCCCcEEEEECCCCC--EEEEEeCCC-----ccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence 87 5 99999999887 777787776 7889999998 9999999999999999999999988888889999999
Q ss_pred EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
++|+ ++++|++++.|+.|++||+++++.... .. .|..+|.+++|+| ++++|++++.|+. |++||++. ......
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~~--~h~~~v~~l~~sp-d~~~l~s~s~dg~-i~iwd~~~-~~~~~~ 243 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LE--GHAMPIRSLTFSP-DSQLLVTASDDGY-IKIYDVQH-ANLAGT 243 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC--CCSSCCCEEEECT-TSCEEEEECTTSC-EEEEETTT-CCEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-Ec--ccCCceeEEEEcC-CCCEEEEEcCCCe-EEEEECCC-cceeEE
Confidence 9999 799999999999999999998874433 33 3678999999998 8999999999999 99999987 667888
Q ss_pred EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
+.+|...|.+++|+|++ .+|++++.|+.|++||+.... ......+|...|.+++|+|++..|++++.
T Consensus 244 ~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~------------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 244 LSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRT------------CVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCE------------EEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 99999999999999999 699999999999999998876 23355689999999999999999999999
Q ss_pred CCeEEEEeC
Q 040307 331 VNKLQLLKV 339 (339)
Q Consensus 331 d~~v~~w~v 339 (339)
|+.|++|++
T Consensus 311 d~~i~vwd~ 319 (321)
T 3ow8_A 311 DQEIHIYDC 319 (321)
T ss_dssp TCCEEEEEC
T ss_pred CCeEEEEeC
Confidence 999999985
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.3e-47 Score=313.83 Aligned_cols=288 Identities=17% Similarity=0.208 Sum_probs=243.8
Q ss_pred eeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 10 GVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 10 ~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
...++. |.++|.+++|+|+ +++|++|+ .||.|+||++... .... .+ ..|..+|.+++|+|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~---~~~l~s~~----~dg~v~lWd~~~~--~~~~--~~-~~~~~~v~~~~~~~~~----- 67 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPT---EPWVLTTL----YSGRVELWNYETQ--VEVR--SI-QVTETPVRAGKFIARK----- 67 (304)
T ss_dssp CEEEEEEECSCEEEEEECSS---SSEEEEEE----TTSEEEEEETTTT--EEEE--EE-ECCSSCEEEEEEEGGG-----
T ss_pred eEEeecCCCCceEEEEECCC---CCEEEEEc----CCCcEEEEECCCC--ceeE--Ee-eccCCcEEEEEEeCCC-----
Confidence 334443 7889999999999 99999999 7999999887643 2222 23 5788999999999999
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeecc
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAH 165 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~ 165 (339)
++|++|+ | .|++||+.+++ .+..+.+|. ..|++++|+| ++.+|++|+.|++|++||++++ .....+.+|
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGE--KVVDFEAHP-----DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CEEEEECCCCEEEEEECCCCc--EEEEEeCCC-----CcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 8888887 4 99999999987 788889988 8999999998 8999999999999999999877 455678899
Q ss_pred CCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCCCeEEEEecC
Q 040307 166 DREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIR 242 (339)
Q Consensus 166 ~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~~~i~i~d~~ 242 (339)
...|.+++|+| +.+|++++.|+.|++||++.......+... +...+..+.|+|. ++.+|++++.|+. |++||++
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~ 216 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQ 216 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC--CcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCC
Confidence 99999999993 679999999999999999887755544433 5578999999873 5679999999999 9999998
Q ss_pred CCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307 243 FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 243 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 322 (339)
. .+++..+.+|...|.+++|+|++ .+|++|+.||.|++||+.+.+ .......|...+.+++|+|++
T Consensus 217 ~-~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 217 T-KSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK------------VEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp T-TEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC------------EEEEECCSSSSEEEEEECTTC
T ss_pred C-CccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc------------eeeeccCCCccEEEEEECCCC
Confidence 7 67789999999999999999999 599999999999999999877 222445678899999999988
Q ss_pred Cc-eEEEecCCeEEEEeC
Q 040307 323 LD-WIAIAFVNKLQLLKV 339 (339)
Q Consensus 323 ~~-l~~~~~d~~v~~w~v 339 (339)
.. +++++.++.+.+|++
T Consensus 283 ~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 283 RKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp GGGCEEEEETTEEEEEEC
T ss_pred CceEEEEecCCceEEEEe
Confidence 64 467777777887764
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-46 Score=317.62 Aligned_cols=304 Identities=19% Similarity=0.291 Sum_probs=241.2
Q ss_pred ceeeeee-ccC-CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307 9 PGVHTYM-AQW-PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 9 ~~~~~~~-~~~-~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
+.+.++. |.. +|.+++|+|+ +++||+|+ .|+.|+||++........ ..+..+|...|.+++|+|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~---g~~las~~----~D~~i~iw~~~~~~~~~~--~~~~~~h~~~v~~~~~sp~g--- 73 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPA---GTLLASCG----GDRRIRIWGTEGDSWICK--SVLSEGHQRTVRKVAWSPCG--- 73 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTT---SSCEEEEE----TTSCEEEEEEETTEEEEE--EEECSSCSSCEEEEEECTTS---
T ss_pred EEeeeecCCCCCcEEEEEECCC---CCEEEEEc----CCCeEEEEEcCCCcceee--eeeccccCCcEEEEEECCCC---
Confidence 3444443 555 8999999999 99999999 799999988765432211 12335799999999999999
Q ss_pred CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeee
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQ 161 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~ 161 (339)
++|++++ | .+++|++......+...+.+|. ..|.+++|+| ++++|++|+.|+.|++||++++. .+..
T Consensus 74 --~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~-----~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 74 --NYLASASFDATTCIWKKNQDDFECVTTLEGHE-----NEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp --SEEEEEETTSCEEEEEECCC-EEEEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred --CEEEEEECCCcEEEEEccCCCeEEEEEccCCC-----CCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 8999987 5 9999999887666778888888 8999999998 99999999999999999997763 4566
Q ss_pred eeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 162 LVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 162 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
+.+|...|.+++|+ ++++|++++.|+.|++||.+..+.... .....|...|.+++|+| ++++|++++.|+. |++||
T Consensus 146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~-v~iW~ 222 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-ATLEGHESTVWSLAFDP-SGQRLASCSDDRT-VRIWR 222 (345)
T ss_dssp ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEE
T ss_pred ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-EEecCCCCceEEEEECC-CCCEEEEEeCCCe-EEEec
Confidence 78899999999999 789999999999999999987653221 22234788999999998 8999999999999 99999
Q ss_pred cCCCCC--------------ceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307 241 IRFPTN--------------PVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305 (339)
Q Consensus 241 ~~~~~~--------------~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (339)
...... .+..+.+ |...|++++|+|++ ..|++++.|+.|++|+...... +.. +........
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~-~~~--~~~~~~~~~ 298 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSD-PQQ--PTFSLTAHL 298 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSC-TTS--CCEEEEEEE
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCC-cce--eeEEEEeee
Confidence 754221 1233444 88899999999999 5999999999999999987541 000 000000011
Q ss_pred eecccceeEEEEecCCCC-ceEEEecCCeEEEEeC
Q 040307 306 CYQSMAEINVVRWSPLEL-DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 306 ~~~~~~~i~~~~~~p~~~-~l~~~~~d~~v~~w~v 339 (339)
..+|...|++++|+|+++ .|++++.|+.|++|++
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 236889999999999986 5778899999999984
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-45 Score=311.60 Aligned_cols=281 Identities=16% Similarity=0.237 Sum_probs=240.1
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|..+|.+++|+|+ +++|++|+ .|+.|+||+..... ... .+ ..|...|.+++|+|++ .+|+++
T Consensus 53 gH~~~v~~~~~s~d---~~~l~s~s----~Dg~v~iWd~~~~~--~~~--~~-~~~~~~v~~~~~s~~~-----~~l~s~ 115 (340)
T 1got_B 53 GHLAKIYAMHWGTD---SRLLLSAS----QDGKLIIWDSYTTN--KVH--AI-PLRSSWVMTCAYAPSG-----NYVACG 115 (340)
T ss_dssp CCSSCEEEEEECTT---SSEEEEEE----TTTEEEEEETTTCC--EEE--EE-ECSSSCEEEEEECTTS-----SEEEEE
T ss_pred CCCCceEEEEECCC---CCEEEEEe----CCCcEEEEECCCCC--cce--Ee-ecCCccEEEEEECCCC-----CEEEEE
Confidence 47899999999999 99999999 79999998865433 222 22 5788999999999999 889888
Q ss_pred C-C-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 95 G-D-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
+ | .+++|++.+.+ ......+.+|. ..|.++.|++ ++ .+++++.|+.|++||+++++.+..+.+|...|.
T Consensus 116 ~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 116 GLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp ETTCEEEEEETTTCSBSCEEEEEEECCS-----SCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred eCCCeEEEEECccCCCcceeEEEecCCC-----ccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 7 5 99999998754 23556777887 8999999986 54 589999999999999999999999999999999
Q ss_pred EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
+++|+ ++.+|++++.|+.|++||++++..... +. .|...|.+++|+| ++++|++++.|+. |++||++. .+.+.
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~-~~--~h~~~v~~v~~~p-~~~~l~s~s~d~~-v~iwd~~~-~~~~~ 262 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FT--GHESDINAICFFP-NGNAFATGSDDAT-CRLFDLRA-DQELM 262 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-TEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-Ec--CCcCCEEEEEEcC-CCCEEEEEcCCCc-EEEEECCC-CcEEE
Confidence 99999 788999999999999999998874433 33 3678999999999 8999999999999 99999987 44455
Q ss_pred EEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEE
Q 040307 250 VLSK--HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIA 327 (339)
Q Consensus 250 ~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~ 327 (339)
.+.. +...|.+++|+|++ .+|++|+.|+.|++||+.... ......+|...|.+++|+|++..|++
T Consensus 263 ~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~------------~~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 263 TYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD------------RAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp EECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCc------------EeeEeecCCCcEEEEEEcCCCCEEEE
Confidence 4442 23479999999999 699999999999999998876 23356689999999999999999999
Q ss_pred EecCCeEEEEe
Q 040307 328 IAFVNKLQLLK 338 (339)
Q Consensus 328 ~~~d~~v~~w~ 338 (339)
++.|+.|++|+
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999996
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-45 Score=310.78 Aligned_cols=282 Identities=17% Similarity=0.244 Sum_probs=239.8
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|..+|++++|+|+ +++||+|+ .|+.|+||+........ .+ ..|...|.+++|+|++ .+|+++
T Consensus 62 gH~~~V~~~~~s~d---~~~l~s~s----~Dg~v~vWd~~~~~~~~----~~-~~~~~~v~~~~~sp~g-----~~lasg 124 (354)
T 2pbi_B 62 GHGNKVLCMDWCKD---KRRIVSSS----QDGKVIVWDSFTTNKEH----AV-TMPCTWVMACAYAPSG-----CAIACG 124 (354)
T ss_dssp CCSSCEEEEEECTT---SSEEEEEE----TTSEEEEEETTTCCEEE----EE-ECSSSCCCEEEECTTS-----SEEEEE
T ss_pred CCCCeEEEEEECCC---CCEEEEEe----CCCeEEEEECCCCCcce----EE-ecCCCCEEEEEECCCC-----CEEEEe
Confidence 47899999999999 99999999 89999998765433222 22 5678899999999999 899998
Q ss_pred C-C-cEEEEeecCCc----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307 95 G-D-SLRLWEIHDDR----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE 168 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 168 (339)
+ | .+++|++.... ......+..|. ..|.+++|+| ++..|++++.|++|++||+++++.+..+.+|...
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----NYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp STTSEEEEEECCCCTTCCSGGGCEEEEECS-----SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred eCCCCEEEEEEeccccccccccceeeeccC-----CcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 8 4 99999986542 22455667777 8999999998 8999999999999999999999999999999999
Q ss_pred eeEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 169 VYDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 169 v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
|.+++|+ ++++|++++.|+.|++||+++++.... +. .|...|.+++|+| ++.+|++++.|+. |++||++. .
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-~~--~h~~~v~~v~~~p-~~~~l~s~s~D~~-v~lwd~~~-~ 272 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-FE--THESDVNSVRYYP-SGDAFASGSDDAT-CRLYDLRA-D 272 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-T
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-ec--CCCCCeEEEEEeC-CCCEEEEEeCCCe-EEEEECCC-C
Confidence 9999998 258999999999999999999874433 33 3778999999998 8999999999999 99999987 4
Q ss_pred CceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307 246 NPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL 323 (339)
Q Consensus 246 ~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 323 (339)
..+..+..+ ...+.+++|+|++ .+|++++.|+.|++||+.... ......+|...|++++|+|+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~------------~~~~l~~h~~~v~~l~~spdg~ 339 (354)
T 2pbi_B 273 REVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGS------------RVSILFGHENRVSTLRVSPDGT 339 (354)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS------------EEEEECCCSSCEEEEEECTTSS
T ss_pred cEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCc------------eEEEEECCCCcEEEEEECCCCC
Confidence 444444433 3478999999999 699999999999999998776 2335568999999999999999
Q ss_pred ceEEEecCCeEEEEe
Q 040307 324 DWIAIAFVNKLQLLK 338 (339)
Q Consensus 324 ~l~~~~~d~~v~~w~ 338 (339)
+|++++.|+.|++|+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 999999999999995
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.7e-46 Score=320.63 Aligned_cols=285 Identities=18% Similarity=0.245 Sum_probs=238.2
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.++|++++|+|+ +++|++|+ .|++|+||+..... ... .+ ..|...|.+++|+|++ ++||+|
T Consensus 64 gH~~~V~~~~~sp~---~~~l~s~s----~D~~v~iWd~~~~~--~~~--~~-~~h~~~v~~~~~s~~g-----~~las~ 126 (380)
T 3iz6_a 64 GHSGKVYSLDWTPE---KNWIVSAS----QDGRLIVWNALTSQ--KTH--AI-KLHCPWVMECAFAPNG-----QSVACG 126 (380)
T ss_dssp CCSSCEEEEEECTT---SSCEEEEE----TTSEEEEEETTTTE--EEE--EE-ECCCTTCCCCEECTTS-----SEEEEC
T ss_pred ccccEEEEEEEcCC---CCEEEEEe----CCCeEEEEECCCCc--cce--EE-ecCCCCEEEEEECCCC-----CEEEEe
Confidence 47899999999999 99999999 79999998865432 222 33 5799999999999999 899998
Q ss_pred C-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-----
Q 040307 95 G-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL----- 162 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~----- 162 (339)
+ | .+++|++.... ......+.+|. ..|.++.|+|.++..|++|+.|++|++||+++++.+..+
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-----~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHK-----GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCS-----SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCC-----cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence 8 4 99999987532 22344567777 889999999855678999999999999999999887766
Q ss_pred eccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 163 VAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 163 ~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
.+|...|.+++|+ ++++|++|+.|+.|++||++........+.. |...|.+++|+| ++++|++++.|+. |++||
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~p-~~~~l~s~s~D~~-i~lwd 277 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG--HEGDINSVKFFP-DGQRFGTGSDDGT-CRLFD 277 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC--CSSCCCEEEECT-TSSEEEEECSSSC-EEEEE
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC--cCCCeEEEEEec-CCCeEEEEcCCCe-EEEEE
Confidence 5788999999997 5789999999999999999865444444444 788999999998 8999999999999 99999
Q ss_pred cCCCCCceEEEecCC-------CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee----ecc
Q 040307 241 IRFPTNPVVVLSKHE-------GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC----YQS 309 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~ 309 (339)
++. +.++..+..+. ..|.+++|+|++ .+|++|+.||.|++||+...+ ..... .+|
T Consensus 278 ~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~------------~~~~~~~~~~~h 343 (380)
T 3iz6_a 278 MRT-GHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAE------------MVLNLGTLQNSH 343 (380)
T ss_dssp TTT-TEEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCC------------EEEEECCSCSSC
T ss_pred CCC-CcEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCc------------eEEEEecccCCC
Confidence 987 55555555432 248999999999 699999999999999998766 11111 468
Q ss_pred cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 310 MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 310 ~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...|++++|+|++..|++++.|+.|++|++
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 899999999999999999999999999985
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-44 Score=300.44 Aligned_cols=283 Identities=15% Similarity=0.235 Sum_probs=241.2
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|..+|.+++|+|+ +++||+|+ .|+.|++|+.... .... .+ ..|...|.+++|+|++ ++|+++
T Consensus 21 gh~~~v~~~~~s~~---~~~l~s~~----~dg~i~iw~~~~~--~~~~--~~-~~h~~~v~~~~~~~~~-----~~l~s~ 83 (312)
T 4ery_A 21 GHTKAVSSVKFSPN---GEWLASSS----ADKLIKIWGAYDG--KFEK--TI-SGHKLGISDVAWSSDS-----NLLVSA 83 (312)
T ss_dssp CCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETTTC--CEEE--EE-CCCSSCEEEEEECTTS-----SEEEEE
T ss_pred ccCCcEEEEEECCC---CCEEEEee----CCCeEEEEeCCCc--ccch--hh-ccCCCceEEEEEcCCC-----CEEEEE
Confidence 47889999999999 99999999 7999999876543 3322 23 6899999999999999 888888
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ | .|++||+++++ ....+.+|. ..|.+++|+| ++++|++|+.|+.|++||+++++.+..+..|...|.++
T Consensus 84 ~~d~~i~vwd~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 84 SDDKTLKIWDVSSGK--CLKTLKGHS-----NYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp ETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCCEEEEEECCCCc--EEEEEcCCC-----CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence 7 4 99999999887 778888888 8999999998 99999999999999999999999999999999999999
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
+|+ ++++|++++.|+.|++||+++.+....+... +...+..++|+| ++++|++++.|+. |++||++. .+.+..+
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~~~d~~-i~iwd~~~-~~~~~~~ 230 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSP-NGKYILAATLDNT-LKLWDYSK-GKCLKTY 230 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS--SCCCEEEEEECT-TSSEEEEEETTTE-EEEEETTT-TEEEEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc--CCCceEEEEECC-CCCEEEEEcCCCe-EEEEECCC-CcEEEEE
Confidence 999 7899999999999999999988755544333 557899999998 8999999999998 99999987 6667788
Q ss_pred ecCCCCee--EEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307 252 SKHEGSVN--GISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 252 ~~~~~~v~--~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
.+|...+. ...+++.++.+|++|+.||.|++||+.... ......+|...|.+++|+|+++.+++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE------------IVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC------------EEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch------------hhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 88876543 334554333699999999999999998877 2235567999999999999999888776
Q ss_pred --cCCeEEEEeC
Q 040307 330 --FVNKLQLLKV 339 (339)
Q Consensus 330 --~d~~v~~w~v 339 (339)
.|+.|++|+.
T Consensus 299 ~~~d~~i~~W~~ 310 (312)
T 4ery_A 299 LENDKTIKLWKS 310 (312)
T ss_dssp CTTTCCEEEEEC
T ss_pred ccCCccEEEecC
Confidence 6999999984
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.1e-44 Score=299.87 Aligned_cols=292 Identities=15% Similarity=0.167 Sum_probs=236.0
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.++|.+++|+|+ .+++|++|+ .|++|++|++...............+|...|.+++|+|++ .+|+++
T Consensus 15 gH~~~V~~l~~~~~--~~~~l~s~s----~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-----~~l~s~ 83 (319)
T 3frx_A 15 GHNGWVTSLATSAG--QPNLLLSAS----RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-----AYALSA 83 (319)
T ss_dssp CCSSCEEEEEECSS--CTTEEEEEE----TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-----SEEEEE
T ss_pred cccceEEEEEccCC--CccEEEEec----CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-----CEEEEE
Confidence 37899999999997 248999999 7999999998654433221111226899999999999999 888888
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ | +|++||+.+++ ....+.+|. ..|.+++|+| ++.+|++|+.|++|++||++ ++.+..+.+|...|.++
T Consensus 84 s~D~~v~~wd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 84 SWDKTLRLWDVATGE--TYQRFVGHK-----SDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp ETTSEEEEEETTTTE--EEEEEECCS-----SCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred eCCCEEEEEECCCCC--eeEEEccCC-----CcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 7 5 99999999987 788888988 8999999998 99999999999999999996 45677788999999999
Q ss_pred EecC-------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 173 SWGG-------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 173 ~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
+|++ +..|++++.|+.|++||+++.+.... +. .|...|.+++|+| ++++|++++.|+. |++||++. .
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~--~h~~~v~~~~~sp-~g~~l~s~~~dg~-i~iwd~~~-~ 228 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FI--GHNSNINTLTASP-DGTLIASAGKDGE-IMLWNLAA-K 228 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEE-EC--CCCSCEEEEEECT-TSSEEEEEETTCE-EEEEETTT-T
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-ec--CCCCcEEEEEEcC-CCCEEEEEeCCCe-EEEEECCC-C
Confidence 9983 33899999999999999998764333 22 3788999999998 9999999999999 99999987 5
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW 325 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 325 (339)
+++..+.. ...|.+++|+|++ .+|++++. +.+++|++..... .... ..........+...+.+++|+|+|++|
T Consensus 229 ~~~~~~~~-~~~v~~~~~sp~~-~~la~~~~-~~i~v~~~~~~~~-~~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 229 KAMYTLSA-QDEVFSLAFSPNR-YWLAAATA-TGIKVFSLDPQYL-VDDL---RPEFAGYSKAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp EEEEEEEC-CSCEEEEEECSSS-SEEEEEET-TEEEEEEETTEEE-EEEE---CCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred cEEEEecC-CCcEEEEEEcCCC-CEEEEEcC-CCcEEEEeCcCee-eecc---CccccccccCcCcceeEEEECCCCCEE
Confidence 66777765 4689999999999 58888775 4599999986540 0000 000000112356779999999999999
Q ss_pred EEEecCCeEEEEeC
Q 040307 326 IAIAFVNKLQLLKV 339 (339)
Q Consensus 326 ~~~~~d~~v~~w~v 339 (339)
++++.|+.|++|++
T Consensus 302 ~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 302 FAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEeecCceEEEEEE
Confidence 99999999999985
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-44 Score=300.58 Aligned_cols=292 Identities=20% Similarity=0.278 Sum_probs=225.8
Q ss_pred eeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeec-CCCCceEEEEcCCCCCCC
Q 040307 10 GVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFD-HPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 10 ~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~ 87 (339)
.+..+. |..+|.+++|+|+ +||+|+ .|+.|+||++......... .+... |...|.+++|+|++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~-----~las~~----~D~~i~lw~~~~~~~~~~~--~~~~~~h~~~v~~v~~sp~~---- 70 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG-----ILATGS----TDRKIKLVSVKYDDFTLID--VLDETAHKKAIRSVAWRPHT---- 70 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT-----EEEEEE----SSSCEEEEECSSSCCEEEE--EECTTCCCSCEEEEEECTTS----
T ss_pred cceeeccCCCceeeeccCCC-----EEEEEc----CCCEEEEEEecCCCeEEEE--EEecCCccCCEEEEEECCCC----
Confidence 444444 7899999999987 899999 7999999888754333222 22233 99999999999999
Q ss_pred CCeEEEeC-C-cEEEEeecCC-----cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----
Q 040307 88 PDIVATSG-D-SLRLWEIHDD-----RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE---- 156 (339)
Q Consensus 88 ~~~la~~~-~-~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---- 156 (339)
.+||+++ | +|+||++... .......+.+|. ..|.+++|+| ++++|++|+.|++|++||++..
T Consensus 71 -~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 71 -SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----NEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp -SEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred -CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----CcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 8999887 5 9999998642 223567788888 8999999998 9999999999999999999432
Q ss_pred eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc-eeeEEeCCCCCCCeEEEEEecCC-CCeEEEEeeCC
Q 040307 157 ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKER-STIIYENPVQDCPLLRLEWNKAD-PRFMATVGMDS 233 (339)
Q Consensus 157 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~d~ 233 (339)
+++..+.+|...|.+++|+ ++++|++++.|+.|++||.+.... ...... .|...|.+++|+|.. +.+|++++.|+
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN--GHEGTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred EEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc--CCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence 4567788999999999999 789999999999999999887631 222233 478899999999832 66899999999
Q ss_pred CeEEEEecCCCC-------CceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-
Q 040307 234 NKVVVLDIRFPT-------NPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE- 304 (339)
Q Consensus 234 ~~i~i~d~~~~~-------~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~- 304 (339)
. |++||++... .....+.. |...|.+++|++++ +|++++.||.|+|||..... ....
T Consensus 222 ~-v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~-----------~~~~~ 287 (330)
T 2hes_X 222 T-VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE-----------WKVFA 287 (330)
T ss_dssp C-EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE-----------EEEEE
T ss_pred e-EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc-----------eEEEe
Confidence 9 9999987532 12334444 88999999999764 89999999999999998653 1122
Q ss_pred -eeecccc-eeEEEEecC--CCCceEEEecCCeEEEEeC
Q 040307 305 -LCYQSMA-EINVVRWSP--LELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 -~~~~~~~-~i~~~~~~p--~~~~l~~~~~d~~v~~w~v 339 (339)
....|.. .|++++|+| ++..|++++.|+.|++|++
T Consensus 288 ~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 288 KRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 2245766 899999999 6778889999999999985
No 13
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-44 Score=308.02 Aligned_cols=291 Identities=15% Similarity=0.160 Sum_probs=237.2
Q ss_pred eeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee-------------EeecCCCCceEEE
Q 040307 12 HTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR-------------LIFDHPYTPTNIA 78 (339)
Q Consensus 12 ~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~-------------~~~~~~~~v~~l~ 78 (339)
..+.|...|.+++|+|+ +++||+|+ ++.++||++............ ....+...|.+++
T Consensus 59 ~~~~h~~~V~~v~fspd---g~~la~g~-----~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 130 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSND---GEYLATGC-----NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130 (393)
T ss_dssp EEEECSSCCCEEEECTT---SSEEEEEC-----BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred EecCCCCEEEEEEECCC---CCEEEEEc-----CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence 34568899999999999 99999988 789999887643321111000 0001233589999
Q ss_pred EcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 040307 79 FFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE 156 (339)
Q Consensus 79 ~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 156 (339)
|+|++ ++|++|+ | .|++||+.+++ ....+.+|. ..|.+++|+| ++++|++++.|++|++||++++
T Consensus 131 ~s~dg-----~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~-----~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 131 FSPDG-----KFLATGAEDRLIRIWDIENRK--IVMILQGHE-----QDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp ECTTS-----SEEEEEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSEEEEEETTTT
T ss_pred ECCCC-----CEEEEEcCCCeEEEEECCCCc--EEEEEccCC-----CCEEEEEEcC-CCCEEEEecCCCcEEEEECCCC
Confidence 99999 8899887 4 99999999886 777888888 8999999998 9999999999999999999999
Q ss_pred eeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEE----eCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307 157 ILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIY----ENPVQDCPLLRLEWNKADPRFMATVG 230 (339)
Q Consensus 157 ~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~~~ 230 (339)
+....+. +...+.+++|+ ++++|++++.|+.|++||++++.....+. ....|...|.+++|+| ++++|++++
T Consensus 198 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s 275 (393)
T 1erj_A 198 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGS 275 (393)
T ss_dssp EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEE
T ss_pred eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEe
Confidence 8877775 66789999999 57899999999999999999887544331 1134778999999998 899999999
Q ss_pred eCCCeEEEEecCCCC-----------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307 231 MDSNKVVVLDIRFPT-----------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG 299 (339)
Q Consensus 231 ~d~~~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 299 (339)
.|+. |++||++... .....+.+|...|.+++|+|++ .+|++|+.|+.|++||+..+.
T Consensus 276 ~d~~-v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~---------- 343 (393)
T 1erj_A 276 LDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN---------- 343 (393)
T ss_dssp TTSE-EEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCC----------
T ss_pred CCCE-EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCe----------
Confidence 9999 9999997532 2345778899999999999999 599999999999999999877
Q ss_pred cccceeeecccceeEEEEecC------CCCceEEEecCCeEEEEeC
Q 040307 300 DVEPELCYQSMAEINVVRWSP------LELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~p------~~~~l~~~~~d~~v~~w~v 339 (339)
......+|...|.+++|+| ++..+++++.|++|++|++
T Consensus 344 --~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 344 --PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp --EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred --EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 2335568999999999987 5667889999999999984
No 14
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.2e-43 Score=294.30 Aligned_cols=290 Identities=16% Similarity=0.183 Sum_probs=249.0
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
+.+....|..+|.+++|+|+ +++|++++ ||.|++|++................|...|.+++|+|++
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~---~~~l~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 109 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNP---TRHVYTGG-----KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG----- 109 (337)
T ss_dssp EEEEEECCSSCCCEEEECSS---SSEEEEEC-----BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-----
T ss_pred ccceeccCCCceEEEEEecC---CcEEEEcC-----CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-----
Confidence 44556678999999999999 99999988 899999998765433332111112789999999999999
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
++|++++ + .|++|++.+++......+..|. ..|.+++|+| ++++|++++.||.|++||+++++.+..+..|.
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSS-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCC-----CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence 7888876 4 9999999988755667777777 8999999998 99999999999999999999999999999999
Q ss_pred CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
..+.+++|+ ++++|++++.|+.|++||+++.+...... +...+.+++|+| +++++++++.++. |++||++..
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~-~~~~l~~~~~~~~-i~~~~~~~~- 256 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP-TGEWLAVGMESSN-VEVLHVNKP- 256 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTSS-
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECC-CCCEEEEEcCCCc-EEEEECCCC-
Confidence 999999999 78899999999999999999887544432 457899999998 8999999999999 999999873
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW 325 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 325 (339)
+ ...+..|...|.+++|+|++ .+|++++.||.|++||+...+ ......|...|.+++|+|+++.+
T Consensus 257 ~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 257 D-KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA-------------SIFQSKESSSVLSCDISVDDKYI 321 (337)
T ss_dssp C-EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------------EEEEEECSSCEEEEEECTTSCEE
T ss_pred C-eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCe-------------EEEEecCCCcEEEEEECCCCCEE
Confidence 3 46778899999999999999 699999999999999999887 45566788999999999999999
Q ss_pred EEEecCCeEEEEeC
Q 040307 326 IAIAFVNKLQLLKV 339 (339)
Q Consensus 326 ~~~~~d~~v~~w~v 339 (339)
++++.|+.|++|++
T Consensus 322 ~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 322 VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEecCCCeEEEEEE
Confidence 99999999999985
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-42 Score=293.93 Aligned_cols=295 Identities=15% Similarity=0.214 Sum_probs=228.7
Q ss_pred eccCCeeEEEe-----ee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcc--cceeeEeecCCCCceEEEEcCCCCCC
Q 040307 15 MAQWPISTVAW-----SV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF--SADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 15 ~~~~~v~~i~~-----sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
.|.++|++++| +| + +++||+|+ .|++|+||++....... ........+|...|.+++|+|++
T Consensus 19 gH~~~V~~~~~~~s~~~~~d---~~~l~sgs----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--- 88 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENED---SPVLISGS----RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--- 88 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCC---CCEEEEEE----TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---
T ss_pred cchhhhhheeeEEEeecCCC---CCEEEEEc----CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---
Confidence 37899999999 66 6 89999999 79999999987543211 11111226899999999999999
Q ss_pred CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-- 162 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-- 162 (339)
.++++++ | +|++||+.+++ ....+.+|. ..|.+++|+| ++++|++++.|+.|++||+.... ....
T Consensus 89 --~~l~s~s~D~~v~lwd~~~~~--~~~~~~~h~-----~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~ 157 (343)
T 2xzm_R 89 --CFAISSSWDKTLRLWDLRTGT--TYKRFVGHQ-----SEVYSVAFSP-DNRQILSAGAEREIKLWNILGEC-KFSSAE 157 (343)
T ss_dssp --TEEEEEETTSEEEEEETTSSC--EEEEEECCC-----SCEEEEEECS-STTEEEEEETTSCEEEEESSSCE-EEECCT
T ss_pred --CEEEEEcCCCcEEEEECCCCc--EEEEEcCCC-----CcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCc-eeeeec
Confidence 8988887 5 99999999887 778888888 8999999998 99999999999999999997443 3233
Q ss_pred -eccCCceeEEEecC-C----------cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307 163 -VAHDREVYDISWGG-F----------NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG 230 (339)
Q Consensus 163 -~~~~~~v~~~~~~~-~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 230 (339)
..|...|.+++|++ + .+|++++.|+.|++||.+. + ....... |...|.+++|+| ++++|++++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~-~~~~~~~--h~~~v~~~~~s~-~g~~l~sgs 232 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q-IRYTFKA--HESNVNHLSISP-NGKYIATGG 232 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E-EEEEEEC--CSSCEEEEEECT-TSSEEEEEE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c-eeEEEcC--ccccceEEEECC-CCCEEEEEc
Confidence 26888999999993 3 6899999999999999432 2 2223333 778999999998 999999999
Q ss_pred eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC-CCCCCCcccceeeecc
Q 040307 231 MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG-NGGPSGDVEPELCYQS 309 (339)
Q Consensus 231 ~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 309 (339)
.|+. |++||++....+...+. +...|.+++|+|++ .++++ +.|+.|++|++......+. ..............+|
T Consensus 233 ~dg~-v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (343)
T 2xzm_R 233 KDKK-LLIWDILNLTYPQREFD-AGSTINQIAFNPKL-QWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308 (343)
T ss_dssp TTCE-EEEEESSCCSSCSEEEE-CSSCEEEEEECSSS-CEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred CCCe-EEEEECCCCcccceeec-CCCcEEEEEECCCC-CEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence 9999 99999965455555553 45679999999998 46654 4588899999987651100 0000000000011257
Q ss_pred cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 310 MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 310 ~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...|.+++|+|+++.|++++.||.|++|++
T Consensus 309 ~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 309 NPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred CCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 788999999999999999999999999984
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-42 Score=288.86 Aligned_cols=243 Identities=16% Similarity=0.185 Sum_probs=214.7
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|.+++|+|++ .+|++++ | .|++||+.+++ ....+..|. .+|.+++|+| ++++|++|+.|
T Consensus 10 ~~h~~~V~~~~fsp~~-----~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~l~s~s~d 76 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTE-----PWVLTTLYSGRVELWNYETQV--EVRSIQVTE-----TPVRAGKFIA-RKNWIIVGSDD 76 (304)
T ss_dssp EEECSCEEEEEECSSS-----SEEEEEETTSEEEEEETTTTE--EEEEEECCS-----SCEEEEEEEG-GGTEEEEEETT
T ss_pred cCCCCceEEEEECCCC-----CEEEEEcCCCcEEEEECCCCc--eeEEeeccC-----CcEEEEEEeC-CCCEEEEECCC
Confidence 6899999999999999 8888887 5 99999999886 778888887 8999999998 99999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
+.|++||+++++.+..+.+|...|.+++|+ ++.+|++++.|++|++||+++.......+.. |...|.+++|+|.++.
T Consensus 77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPS 154 (304)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC--CCSCEEEEEECTTCTT
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc--cCCcEEEEEECCCCCC
Confidence 999999999999999999999999999999 7889999999999999999987655444544 7889999999997789
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc--CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP--LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
+|++|+.|+. |++||++...........|...+..+.|+| ++ .+|++++.|+.|++||++... .
T Consensus 155 ~l~sgs~D~~-v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~------------~ 220 (304)
T 2ynn_A 155 TFASGCLDRT-VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS------------C 220 (304)
T ss_dssp EEEEEETTSE-EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTE------------E
T ss_pred EEEEEeCCCe-EEEEECCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCc------------c
Confidence 9999999999 999999875444444456678899999987 55 599999999999999998876 2
Q ss_pred ceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 303 PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 303 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.....+|...|.+++|+|+++.|++++.|++|++|++
T Consensus 221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 3356689999999999999998999999999999985
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.7e-42 Score=311.18 Aligned_cols=289 Identities=14% Similarity=0.203 Sum_probs=238.1
Q ss_pred ceeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 9 PGVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 9 ~~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
+.+..+ .|...|++++|+|+ +++||+|+ .|++|+||++......... .+ ..|.+.|.+++|+|++
T Consensus 50 ~~~~~~~~h~~~v~~~~~spd---g~~lasg~----~d~~v~lWd~~~~~~~~~~--~~-~~~~~~v~~v~fs~dg---- 115 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPS---GYYCASGD----VHGNVRIWDTTQTTHILKT--TI-PVFSGPVKDISWDSES---- 115 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTT---SSEEEEEE----TTSEEEEEESSSTTCCEEE--EE-ECSSSCEEEEEECTTS----
T ss_pred ccCeEecCCCCceEEEEECCC---CcEEEEEe----CCCCEEEeECCCCcceeeE--ee-cccCCceEEEEECCCC----
Confidence 334444 47889999999999 99999999 7999999887643333222 33 5799999999999999
Q ss_pred CCeEEEeCC------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCeeee
Q 040307 88 PDIVATSGD------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREILET 160 (339)
Q Consensus 88 ~~~la~~~~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~ 160 (339)
+.|+++++ .|++|| .++ ....+.+|. ..|++++|+| ++. .|++|+.|++|++||.++++...
T Consensus 116 -~~l~~~~~~~~~~~~v~~wd--~~~--~~~~l~gh~-----~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 116 -KRIAAVGEGRERFGHVFLFD--TGT--SNGNLTGQA-----RAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp -CEEEEEECCSSCSEEEEETT--TCC--BCBCCCCCS-----SCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred -CEEEEEECCCCceeEEEEee--CCC--CcceecCCC-----CCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEee
Confidence 77777652 466666 444 556677887 8999999999 665 69999999999999999999889
Q ss_pred eeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEe----CCCCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307 161 QLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYE----NPVQDCPLLRLEWNKADPRFMATVGMDSNK 235 (339)
Q Consensus 161 ~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~ 235 (339)
.+.+|...|.+++|+ ++++|++++.|++|++||+++++....+.. ...|...|.+++|+| ++++|++++.|+.
T Consensus 185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~- 262 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKT- 262 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSE-
T ss_pred eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCe-
Confidence 999999999999999 799999999999999999988875444322 014788999999998 9999999999999
Q ss_pred EEEEecCCCCC------------------------------------------ceEEEecCCCCeeEEEeccCCCCeEEE
Q 040307 236 VVVLDIRFPTN------------------------------------------PVVVLSKHEGSVNGISWAPLYGRRLCS 273 (339)
Q Consensus 236 i~i~d~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~ 273 (339)
|++||++.... +...+.+|...|++++|+|++ ++|++
T Consensus 263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s 341 (611)
T 1nr0_A 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFS 341 (611)
T ss_dssp EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEE
Confidence 99999976221 123456799999999999999 69999
Q ss_pred EeCCCcEEEEEecCCCCCCCCCCCCCcccceee--ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 274 VADDSRALIWEVVGPGYRSGNGGPSGDVEPELC--YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 274 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
++.|+.|++||+.... .... ..|...|.+++|++++ .+++++.|+.+++|++
T Consensus 342 ~s~D~~v~~Wd~~~~~-------------~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~ 395 (611)
T 1nr0_A 342 ADAEGHINSWDISTGI-------------SNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPA 395 (611)
T ss_dssp EETTSCEEEEETTTCC-------------EEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECS
T ss_pred EeCCCcEEEEECCCCc-------------eeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeec
Confidence 9999999999998876 2222 4688899999999877 5889999999999974
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-42 Score=314.03 Aligned_cols=290 Identities=16% Similarity=0.217 Sum_probs=234.1
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG- 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~- 95 (339)
.+.+.+++|+|+ |++||+++ ++.|+||++.... ... .+ .+|...|++++|+|++ ++||+|+
T Consensus 18 ~g~~~~~~~spd---g~~l~~~~-----~~~v~l~~~~~~~--~~~--~~-~~h~~~v~~~~~spdg-----~~lasg~~ 79 (611)
T 1nr0_A 18 RGTAVVLGNTPA---GDKIQYCN-----GTSVYTVPVGSLT--DTE--IY-TEHSHQTTVAKTSPSG-----YYCASGDV 79 (611)
T ss_dssp TTCCCCCEECTT---SSEEEEEE-----TTEEEEEETTCSS--CCE--EE-CCCSSCEEEEEECTTS-----SEEEEEET
T ss_pred cCceeEEeeCCC---CCEEEeCC-----CCEEEEecCCCcc--cCe--Ee-cCCCCceEEEEECCCC-----cEEEEEeC
Confidence 578899999999 99999998 6799998876332 221 22 6899999999999999 8999998
Q ss_pred C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCeeeeeeeccCCcee
Q 040307 96 D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 96 ~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
| +|+|||+.+++......+.+|. .+|.+++|+| ++++|++++.+ +.|++|| .++....+.+|...|+
T Consensus 80 d~~v~lWd~~~~~~~~~~~~~~~~-----~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 80 HGNVRIWDTTQTTHILKTTIPVFS-----GPVKDISWDS-ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMN 151 (611)
T ss_dssp TSEEEEEESSSTTCCEEEEEECSS-----SCEEEEEECT-TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEE
T ss_pred CCCEEEeECCCCcceeeEeecccC-----CceEEEEECC-CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCce
Confidence 4 9999999766544566788887 8999999998 99999998875 4788887 4566778889999999
Q ss_pred EEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 171 DISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 171 ~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
+++|+ ++. .|++++.|++|++||.+..+.... +. .|...|.+++|+| ++++|++++.|+. |++||+.. ++.+
T Consensus 152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~-l~--~H~~~V~~v~fsp-dg~~las~s~D~~-i~lwd~~~-g~~~ 225 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-FG--EHTKFVHSVRYNP-DGSLFASTGGDGT-IVLYNGVD-GTKT 225 (611)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-CCEE
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee-ec--cccCceEEEEECC-CCCEEEEEECCCc-EEEEECCC-CcEe
Confidence 99999 444 699999999999999887653332 33 4788999999999 8999999999999 99999987 5566
Q ss_pred EEEe-------cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC-CCCCC-----------------------
Q 040307 249 VVLS-------KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS-GNGGP----------------------- 297 (339)
Q Consensus 249 ~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~----------------------- 297 (339)
..+. +|.+.|.+++|+|++ ++|++++.|++|++||+...+... .....
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred eeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 6663 799999999999999 699999999999999998654100 00000
Q ss_pred -------CCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 298 -------SGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 298 -------~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..........+|...|++++|+|+++.|++++.|++|++|++
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 000001133478899999999999999999999999999985
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=286.54 Aligned_cols=252 Identities=16% Similarity=0.258 Sum_probs=207.4
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
...+.+..+|.+++|+|+ +. |++|+ .||.|+||+++........... ..+|.+.|++++|+|++ ++
T Consensus 76 ~~~~~~~~~v~~~~~s~d---~~-l~~~s----~dg~v~lWd~~~~~~~~~~~~~-~~~H~~~V~~v~~spdg-----~~ 141 (344)
T 4gqb_B 76 SAGVQTEAGVADLTWVGE---RG-ILVAS----DSGAVELWELDENETLIVSKFC-KYEHDDIVSTVSVLSSG-----TQ 141 (344)
T ss_dssp SEEEEESSCEEEEEEETT---TE-EEEEE----TTSEEEEEEECTTSSCEEEEEE-EECCSSCEEEEEECTTS-----SE
T ss_pred eeeeccCCCEEEEEEeCC---Ce-EEEEE----CCCEEEEEeccCCCceeEeecc-ccCCCCCEEEEEECCCC-----CE
Confidence 344556788999999999 64 66777 6999999988765544333112 25899999999999999 89
Q ss_pred EEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--ccC
Q 040307 91 VATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--AHD 166 (339)
Q Consensus 91 la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~ 166 (339)
|++|+ | +|++||+.+++ ++..+.+|. ..|++++|+|.+..+|++++.|++|++||+++++....+. .+.
T Consensus 142 l~sgs~d~~i~iwd~~~~~--~~~~~~~h~-----~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 214 (344)
T 4gqb_B 142 AVSGSKDICIKVWDLAQQV--VLSSYRAHA-----AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPG 214 (344)
T ss_dssp EEEEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----C
T ss_pred EEEEeCCCeEEEEECCCCc--EEEEEcCcC-----CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceee
Confidence 99987 4 99999999987 888999998 9999999998444689999999999999999998777763 455
Q ss_pred CceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 167 REVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 167 ~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
..+.+++|+ ++++|++|+.|+.|++||+++++....+ .. |...|.+++|+|+..++|++|+.|+. |+|||++.
T Consensus 215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~--h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~- 289 (344)
T 4gqb_B 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AV--HSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL- 289 (344)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE-EC--CSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-
T ss_pred ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE-cC--CCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCC-
Confidence 678999999 4678999999999999999988755443 33 77899999999954578999999999 99999986
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
++ +..+.+|.+.|++++|+|+++.+|++++.|++|++|++....
T Consensus 290 ~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 290 SE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred Cc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 33 567889999999999999987688899999999999998765
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-41 Score=305.37 Aligned_cols=274 Identities=19% Similarity=0.305 Sum_probs=236.2
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|..+|.+++|+|+ ++.|++++ .|+.|++|+.+. .... . ...|...|.+++|+|++ ++|+++
T Consensus 301 ~h~~~v~~~~~~~~---~~~l~t~~----~d~~i~~w~~~~--~~~~---~-~~~~~~~v~~~~~s~~g-----~~l~~~ 362 (577)
T 2ymu_A 301 GHSSSVWGVAFSPD---GQTIASAS----DDKTVKLWNRNG--QHLQ---T-LTGHSSSVWGVAFSPDG-----QTIASA 362 (577)
T ss_dssp CCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETTS--CEEE---E-ECCCSSCEEEEEECTTS-----SEEEEE
T ss_pred cCCCCeEEEEECCC---CCEEEEEe----CCCeEEEEeCCC--CeeE---E-EeCCCCCEEEEEECCCC-----CEEEEE
Confidence 36789999999999 99999999 799999987643 2222 2 26789999999999999 888888
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ + .|++|+... + ....+.+|. ..|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|+++
T Consensus 363 ~~dg~v~~~~~~~-~--~~~~~~~~~-----~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 363 SDDKTVKLWNRNG-Q--LLQTLTGHS-----SSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 432 (577)
T ss_dssp ETTSEEEEEETTC-C--EEEEEECCS-----SCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEE
T ss_pred eCCCEEEEEcCCC-C--EEEEecCCC-----CCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEE
Confidence 7 4 999999643 3 677888887 8999999998 9999999999999999996 567788888999999999
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
+|+ ++.+|++++.|+.|++||..... .. .... |...+.+++|+| ++++|++++.|+. |++||.. ++.+..+
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~~~~-~~-~~~~--~~~~v~~~~~sp-d~~~las~~~d~~-i~iw~~~--~~~~~~~ 504 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRNGQL-LQ-TLTG--HSSSVRGVAFSP-DGQTIASASDDKT-VKLWNRN--GQLLQTL 504 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCE-EE-EEEC--CSSCEEEEEECT-TSCEEEEEETTSE-EEEEETT--SCEEEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCE-EE-EEcC--CCCCEEEEEEcC-CCCEEEEEeCCCE-EEEEcCC--CCEEEEE
Confidence 999 78999999999999999975432 22 2333 678999999998 9999999999998 9999964 5778899
Q ss_pred ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307 252 SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 252 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
.+|...|++++|+|++ ++|++++.||.|+|||... + ......+|...|++++|+|++++|++++.|
T Consensus 505 ~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~~-~------------~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-Q------------LLQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp ECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTS-C------------EEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred eCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCCC-C------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 9999999999999999 6999999999999999643 3 134566899999999999999999999999
Q ss_pred CeEEEEe
Q 040307 332 NKLQLLK 338 (339)
Q Consensus 332 ~~v~~w~ 338 (339)
++|++|+
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999996
No 21
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-42 Score=304.87 Aligned_cols=320 Identities=15% Similarity=0.108 Sum_probs=231.1
Q ss_pred CCceeeeeeccCCeeEEEeeecCC------cccEEEEeeec---------------cccCCeEEEEecCCCCCcccceee
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHD------RKSRLAVGSFL---------------EDYSNKIELVNFNPETSDFSADNR 65 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~------~~~~la~g~~~---------------~~~~~~i~i~~~~~~~~~~~~~~~ 65 (339)
+.+....+.+.+.|.+++|+|+.. .+++||+|+.. +..|++|+||+++...........
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~ 202 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT 202 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence 455566777899999999999931 01788887631 235789999998765433221112
Q ss_pred EeecCCCCceEEEEcCCCCC-CCCCeEEEeC-C-cEEEEeecCCcce---------eEEEeecCCCccCCCCEEEEEEcC
Q 040307 66 LIFDHPYTPTNIAFFPSEET-LNPDIVATSG-D-SLRLWEIHDDRTE---------LKSLLNSNKTSEFSSAITSFDWAG 133 (339)
Q Consensus 66 ~~~~~~~~v~~l~~~~~~~~-~~~~~la~~~-~-~i~iw~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~ 133 (339)
+ ..|.+.|.+++|+|++.. .+..+||+++ | +|+|||+..+... +...+.+|. ..|++++|+|
T Consensus 203 l-~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~-----~~v~sv~~s~ 276 (524)
T 2j04_B 203 I-VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD-----SLITTFDFLS 276 (524)
T ss_dssp E-EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT-----TCEEEEEESS
T ss_pred E-EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC-----CCEEEEEecC
Confidence 2 457889999999997210 0016899887 5 9999999876411 223566776 8999999997
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEE--Eec-CC-cEEEEEeCCCcEEEEECCCCcceeeEEeCCC
Q 040307 134 FDTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDI--SWG-GF-NVFASVSGDCSVRVFDLRDKERSTIIYENPV 208 (339)
Q Consensus 134 ~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~--~~~-~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 208 (339)
+ ..|++|+.||+|++||+++++ +...+.+|...|+++ .|+ ++ ++|++++.|++|++||+++.+....+... .
T Consensus 277 -~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~-~ 353 (524)
T 2j04_B 277 -P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR-F 353 (524)
T ss_dssp -S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE-C
T ss_pred -C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc-c
Confidence 4 589999999999999998764 455678999999999 456 45 79999999999999999987754443322 1
Q ss_pred CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 209 QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 209 ~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
....+.+++|+| +++.+++++.|+. |++||++. ...+..+.+|...|++|+|+|++ .+|++|+.||+|++||+...
T Consensus 354 ~~~~v~~v~fsp-~~~~l~s~~~d~t-v~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 354 RGSNLVPVVYCP-QIYSYIYSDGASS-LRAVPSRA-AFAVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCCSCCCEEEET-TTTEEEEECSSSE-EEEEETTC-TTCCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSS
T ss_pred ccCcccceEeCC-CcCeEEEeCCCCc-EEEEECcc-cccceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHh
Confidence 123578999999 7888999999998 99999998 55667888999999999999999 59999999999999997543
Q ss_pred CCCC---------------CCCCCCC-----------------cccceeeecccceeEEEEecCCCC---ceEEEecCCe
Q 040307 289 GYRS---------------GNGGPSG-----------------DVEPELCYQSMAEINVVRWSPLEL---DWIAIAFVNK 333 (339)
Q Consensus 289 ~~~~---------------~~~~~~~-----------------~~~~~~~~~~~~~i~~~~~~p~~~---~l~~~~~d~~ 333 (339)
.... ..-.+.+ ........+|...|.+|+|+|+++ .+++++.||.
T Consensus 430 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~ 509 (524)
T 2j04_B 430 LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL 509 (524)
T ss_dssp TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence 2100 0001111 111224456888999999999965 5666778899
Q ss_pred EEEEeC
Q 040307 334 LQLLKV 339 (339)
Q Consensus 334 v~~w~v 339 (339)
|+||++
T Consensus 510 vrlw~l 515 (524)
T 2j04_B 510 LTLEYL 515 (524)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999985
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.4e-41 Score=282.48 Aligned_cols=294 Identities=15% Similarity=0.189 Sum_probs=232.3
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.++|++|+|+|+ .+++||+|+ .|++|+||++...............+|...|.+++|+|++ ++|+++
T Consensus 36 GH~~~V~~v~~sp~--~~~~l~S~s----~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-----~~l~s~ 104 (340)
T 4aow_A 36 GHNGWVTQIATTPQ--FPDMILSAS----RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-----QFALSG 104 (340)
T ss_dssp CCSSCEEEEEECTT--CTTEEEEEE----TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-----SEEEEE
T ss_pred CccCCEEEEEEeCC--CCCEEEEEc----CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-----CEEEEE
Confidence 38899999999997 357999999 7999999998765543322112226899999999999999 888888
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeeeccCCceeE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQLVAHDREVYD 171 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~v~~ 171 (339)
+ | .|++|+..... .......+. ..+..+.+++ ++.+|++++.|+.+++||+..... .....+|...+..
T Consensus 105 ~~d~~i~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 105 SWDGTLRLWDLTTGT--TTRRFVGHT-----KDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp ETTSEEEEEETTTTE--EEEEEECCS-----SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred cccccceEEeecccc--eeeeecCCC-----CceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence 7 5 99999998876 555555555 7888999997 899999999999999999976653 3445678999999
Q ss_pred EEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 172 ISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 172 ~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
++|+ + ..++++++.|+.|++||+++.+.... .. .|...|.+++|+| ++++|++++.|+. |++||++. .+++
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~--~h~~~v~~~~~s~-~~~~l~s~s~Dg~-i~iwd~~~-~~~~ 250 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-HI--GHTGYLNTVTVSP-DGSLCASGGKDGQ-AMLWDLNE-GKHL 250 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTCE-EEEEETTT-TEEE
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-ec--CCCCcEEEEEECC-CCCEEEEEeCCCe-EEEEEecc-Ccee
Confidence 9998 3 56789999999999999998874443 33 3778999999998 8999999999999 99999987 5566
Q ss_pred EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEE
Q 040307 249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~ 328 (339)
..+.. ...|.++.|+|++ .+++++.|+.|++||++....... ............|...|++++|+|++++|+++
T Consensus 251 ~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 251 YTLDG-GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDE---LKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp EEEEC-SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEE---ECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred eeecC-CceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEe---ccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 66665 5689999999987 466677799999999987540000 00000011234678899999999999999999
Q ss_pred ecCCeEEEEeC
Q 040307 329 AFVNKLQLLKV 339 (339)
Q Consensus 329 ~~d~~v~~w~v 339 (339)
+.||.|+||++
T Consensus 325 s~Dg~v~iW~~ 335 (340)
T 4aow_A 325 YTDNLVRVWQV 335 (340)
T ss_dssp ETTSCEEEEEE
T ss_pred eCCCEEEEEeC
Confidence 99999999985
No 23
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-43 Score=302.69 Aligned_cols=309 Identities=13% Similarity=0.188 Sum_probs=242.5
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC-CCCCCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS-EETLNP 88 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~~~ 88 (339)
.+..+.+..+|.+++|+|+ +.+|++|+ .|+.|++|++............+ ..|...|.+++|+|+ +
T Consensus 60 ~~~~~~~~~~v~~~~~s~~---~~~l~~~~----~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~----- 126 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSHN---NKIIAGAL----DNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQD----- 126 (416)
T ss_dssp CSCCCCCSSCEEEEEECSS---SSCEEEEE----SSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSST-----
T ss_pred EEEEEecCCceEEEEECCC---CCeEEEEc----cCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCC-----
Confidence 4555667889999999999 99999999 79999998887632221111122 579999999999998 6
Q ss_pred CeEEEeC-C-cEEEEeecCCc------ce-eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 040307 89 DIVATSG-D-SLRLWEIHDDR------TE-LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE 159 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~------~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 159 (339)
.+|++++ + .|++||+.+.+ .. ....+..|. ..|.+++|+|..+.+|++++.|+.|++||+++++.+
T Consensus 127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV-----DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS-----CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred CEEEEEcCCCeEEEEECCCCccccccccccccccccCCC-----CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 7888887 4 99999998764 11 112234455 899999999833789999999999999999999988
Q ss_pred eeeecc------CCceeEEEec-CC-cEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307 160 TQLVAH------DREVYDISWG-GF-NVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 160 ~~~~~~------~~~v~~~~~~-~~-~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
..+..+ ...|.+++|+ ++ .++++++.|+ .|++||+++......... ..|...+.+++|+|.++.+|++
T Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEE
T ss_pred eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEE
Confidence 888766 7889999999 43 6899999998 999999998754443333 0367899999999878999999
Q ss_pred EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC--CCCcccce--
Q 040307 229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG--PSGDVEPE-- 304 (339)
Q Consensus 229 ~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~-- 304 (339)
++.|+. |++||++. .+++..+..|...|.+++|+|+++.+|++++.|+.|++||+........... ......+.
T Consensus 281 ~~~dg~-v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (416)
T 2pm9_A 281 SGRDNT-VLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDF 358 (416)
T ss_dssp EESSSE-EEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------------
T ss_pred EeCCCC-EEEeeCCC-CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccc
Confidence 999998 99999987 6788999999999999999999856999999999999999988762111000 00000000
Q ss_pred -------------------eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 -------------------LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 -------------------~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
....|..++.+++|+|+|+.+++++.|+.|+||++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 359 WNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp --------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred cccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 00115677889999999997778889999999986
No 24
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=289.23 Aligned_cols=296 Identities=16% Similarity=0.253 Sum_probs=231.9
Q ss_pred eccCCeeEEEeeecCCccc-EEEEeeecccc---CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC---CCCCC
Q 040307 15 MAQWPISTVAWSVRHDRKS-RLAVGSFLEDY---SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS---EETLN 87 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~-~la~g~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~~ 87 (339)
.|..+|.+++|+|+ +. ++++|+ . |+.|+||+++...... ....+|...|.+++|+|+ +
T Consensus 16 ~h~~~v~~~~~~p~---~~~l~~~~s----~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~---- 80 (357)
T 3i2n_A 16 GFNYTVFDCKWVPC---SAKFVTMGN----FARGTGVIQLYEIQHGDLKL----LREIEKAKPIKCGTFGATSLQQ---- 80 (357)
T ss_dssp ECSSCEEEEEECTT---SSEEEEEEC------CCCEEEEEEEECSSSEEE----EEEEEESSCEEEEECTTCCTTT----
T ss_pred CCCCceEEEEEcCC---CceEEEecC----ccCCCcEEEEEeCCCCcccc----eeeecccCcEEEEEEcCCCCCC----
Confidence 37899999999999 75 555665 4 8999998887543222 223578999999999998 5
Q ss_pred CCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEE------cCCCCCEEEEEeCCCeEEEEECCCCe-e
Q 040307 88 PDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDW------AGFDTRRVATCSVDTTCVIWDIDREI-L 158 (339)
Q Consensus 88 ~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~l~~~~~d~~v~i~d~~~~~-~ 158 (339)
.+|++++ + .|++|++.+++ .....+.+|. ..|.+++| +| ++++|++++.||.|++||+++++ .
T Consensus 81 -~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 81 -RYLATGDFGGNLHIWNLEAPE-MPVYSVKGHK-----EIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp -CCEEEEETTSCEEEECTTSCS-SCSEEECCCS-----SCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred -ceEEEecCCCeEEEEeCCCCC-ccEEEEEecc-----cceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCc
Confidence 6777776 5 99999998875 2556777887 89999965 55 88999999999999999999886 6
Q ss_pred eeeeeccCC----ceeEEE----ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC--CCCeEE
Q 040307 159 ETQLVAHDR----EVYDIS----WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA--DPRFMA 227 (339)
Q Consensus 159 ~~~~~~~~~----~v~~~~----~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~ 227 (339)
+..+..|.. .+.+++ |+ ++++|++++.|+.|++||+++.+.... . .+...+.+++|+|. ++.+|+
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--T--NIKNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--E--ECSSCEEEEEESCSSSSCCEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--c--CCCCceEEEEcCCCCCCCCEEE
Confidence 677765554 789998 56 789999999999999999999875322 2 25679999999985 688999
Q ss_pred EEeeCCCeEEEEecCCCCCceEEE-----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCC---CCCC--
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVL-----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSG---NGGP-- 297 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~-- 297 (339)
+++.++. |++||++. ..+...+ .+|...|.+++|+|++..+|++++.||.|++||+........ .+..
T Consensus 229 ~~~~dg~-i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 229 ATSLEGK-FHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp EEESTTE-EEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred EECCCCe-EEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 9999998 99999987 3344444 389999999999999844899999999999999997652100 0000
Q ss_pred -CCccc-ceeeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307 298 -SGDVE-PELCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV 339 (339)
Q Consensus 298 -~~~~~-~~~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v 339 (339)
.+... ......|...|++++|+|+++.++ +++.|+.|++|++
T Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 307 VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 00111 224457889999999999999988 7899999999985
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-41 Score=282.57 Aligned_cols=246 Identities=16% Similarity=0.276 Sum_probs=214.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|++++|+|++. .+..+|++|+ | +|+||++...+......+.+|. ..|.+++|+| ++.++++++.|
T Consensus 29 ~~H~~~V~~v~~~~~~~-~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~-----~~v~~~~~~~-~~~~l~s~s~D 101 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKK-ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ-----LGVVSVDISH-TLPIAASSSLD 101 (321)
T ss_dssp TSSSSCEEEEEEC--------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECS-SSSEEEEEETT
T ss_pred ccCCCcEEEEEEecCCC-CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC-----CCEEEEEECC-CCCEEEEEeCC
Confidence 58999999999998631 0116888887 5 9999999887655666788888 8999999998 89999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
++|++||+++++.+..+..+...+.+++|+ ++++|++++.|+.|++||+++.+....+. . +...+.+++|+| +++
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~--~~~~v~~~~~sp-dg~ 177 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-T--RGKFILSIAYSP-DGK 177 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-C--SSSCEEEEEECT-TSS
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-C--CCceEEEEEECC-CCC
Confidence 999999999999999998899999999999 79999999999999999999887544433 2 567899999998 999
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
+|++++.|+. |++||++. .+++..+.+|...|.+++|+|++ .+|++++.|+.|++||++... ...
T Consensus 178 ~lasg~~dg~-i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~------------~~~ 242 (321)
T 3ow8_A 178 YLASGAIDGI-INIFDIAT-GKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHAN------------LAG 242 (321)
T ss_dssp EEEEEETTSC-EEEEETTT-TEEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCC------------EEE
T ss_pred EEEEEcCCCe-EEEEECCC-CcEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcc------------eeE
Confidence 9999999999 99999987 67788899999999999999999 699999999999999998876 233
Q ss_pred eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...+|...|.+++|+|+++.|++++.|++|++|++
T Consensus 243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 55679999999999999999999999999999985
No 26
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.7e-41 Score=286.66 Aligned_cols=298 Identities=14% Similarity=0.160 Sum_probs=233.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|..+|.+++|+|+ +++||+|+ .++.|++|+++........ .+ ..|...|.+++|+|++ ++|++++
T Consensus 7 ~~~~i~~~~~s~~---~~~l~~~~----~d~~v~i~~~~~~~~~~~~--~~-~~h~~~v~~~~~~~~~-----~~l~~~~ 71 (372)
T 1k8k_C 7 LVEPISCHAWNKD---RTQIAICP----NNHEVHIYEKSGNKWVQVH--EL-KEHNGQVTGVDWAPDS-----NRIVTCG 71 (372)
T ss_dssp CSSCCCEEEECTT---SSEEEEEC----SSSEEEEEEEETTEEEEEE--EE-ECCSSCEEEEEEETTT-----TEEEEEE
T ss_pred cCCCeEEEEECCC---CCEEEEEe----CCCEEEEEeCCCCcEEeee--ee-cCCCCcccEEEEeCCC-----CEEEEEc
Confidence 6789999999999 99999998 7999999887654311222 33 5799999999999999 8888877
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---ee-eeeccCCce
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL---ET-QLVAHDREV 169 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~-~~~~~~~~v 169 (339)
+ .|++|++++++......+..|. ..|.+++|+| ++++|++++.|+.|++||++.++. .. ....|...|
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRIN-----RAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCS-----SCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCC-----CceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 4 9999999888644444555666 8999999998 899999999999999999987762 22 335688999
Q ss_pred eEEEec-CCcEEEEEeCCCcEEEEECCCCc---------------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 170 YDISWG-GFNVFASVSGDCSVRVFDLRDKE---------------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
.+++|+ ++++|++++.|+.|++||++... ..........|...+.+++|+| ++++|++++.|+
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 224 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDS 224 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTT
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCC
Confidence 999999 78899999999999999975211 0112222224778999999998 889999999999
Q ss_pred CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC--CCC---CCCCC-------------
Q 040307 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG--PGY---RSGNG------------- 295 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~--~~~---~~~~~------------- 295 (339)
. |++||++. .+++..+..|...|.+++|+|++ .+|+++ .|+.|++|++.. +.- .....
T Consensus 225 ~-i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (372)
T 1k8k_C 225 T-VCLADADK-KMAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 300 (372)
T ss_dssp E-EEEEEGGG-TTEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred E-EEEEECCC-CceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence 8 99999987 67888999999999999999998 577777 899999999988 210 00000
Q ss_pred -----CCCCccc------ceeeecccceeEEEEec-CCC---CceEEEecCCeEEEEeC
Q 040307 296 -----GPSGDVE------PELCYQSMAEINVVRWS-PLE---LDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 296 -----~~~~~~~------~~~~~~~~~~i~~~~~~-p~~---~~l~~~~~d~~v~~w~v 339 (339)
....... .....+|...|++++|+ +++ ..|++++.||.|++|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred hhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 0000000 11223799999999977 555 78899999999999984
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-41 Score=288.26 Aligned_cols=298 Identities=12% Similarity=0.089 Sum_probs=235.6
Q ss_pred eccCCeeEEEeeecCC-cccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 15 MAQWPISTVAWSVRHD-RKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~-~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.|..+|.+++|+|+.. ....+++++ .++.|++|++................|...|.+++|+|+.... ..+|++
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~ 90 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATV----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS-HPLLAV 90 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEE----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTC-CEEEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEEC----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCC-CCEEEE
Confidence 4789999999998311 133344444 3789999988754432222111112377899999999994100 057887
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccCCc
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHDRE 168 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~ 168 (339)
++ + .|++||+.+++ ....+.+|. ..|.+++|+|.++++|++++.||.|++||+++++.+..+ ..|...
T Consensus 91 ~~~dg~i~v~d~~~~~--~~~~~~~~~-----~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQ--CIKHYVGHG-----NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp EETTCEEEEECTTTCC--EEEEEESCC-----SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred ecCCCEEEEEEchhce--EeeeecCCC-----CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 76 4 99999999887 777888887 899999999868899999999999999999999988887 679999
Q ss_pred eeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-------------------------EeCCCCCCCeEEEEEecCC
Q 040307 169 VYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-------------------------YENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------------~~~~~~~~~v~~~~~~p~~ 222 (339)
|.+++|+ ++++|++++.|+.|++||+++.+....+ .....|...|.+++|+
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 240 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--- 240 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---
Confidence 9999999 7899999999999999999976532211 1112267889999997
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCC-------------ceEEEecCCCCeeEEEeccC--CCCeEEEEeCCCcEEEEEecC
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTN-------------PVVVLSKHEGSVNGISWAPL--YGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~-------------~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~iwd~~~ 287 (339)
+++|++++.|+. |++||++.... .+..+..|...|.+++|+|+ + .+|++++.||.|++||+..
T Consensus 241 ~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 GDLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp TTEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCS
T ss_pred CCEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCC
Confidence 579999999998 99999987432 36778889999999999999 8 6999999999999999998
Q ss_pred CCCCCCCCCCCCccc-c-eeeecc--cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 288 PGYRSGNGGPSGDVE-P-ELCYQS--MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 288 ~~~~~~~~~~~~~~~-~-~~~~~~--~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.. ... . .....| ...|++++|+|+++.|++++.|+.|++|++
T Consensus 319 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 319 ED----------PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp SS----------GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CC----------CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 76 111 1 133345 789999999999999999999999999986
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-42 Score=299.23 Aligned_cols=296 Identities=17% Similarity=0.265 Sum_probs=239.2
Q ss_pred eeeccCCeeEEEeeecCCccc-EEEEeeecc------ccCCeEEEEecCCCCCc-ccceeeEeecCCCCceEEEEcCCCC
Q 040307 13 TYMAQWPISTVAWSVRHDRKS-RLAVGSFLE------DYSNKIELVNFNPETSD-FSADNRLIFDHPYTPTNIAFFPSEE 84 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~-~la~g~~~~------~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~ 84 (339)
.+.+..+|.+++|+|+ ++ +||+|+..+ ..|+.|+||++...... ... ...|...|.+++|+|++
T Consensus 8 ~l~~~~~v~~~~~sp~---g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~- 79 (416)
T 2pm9_A 8 KLAEFSRTATFAWSHD---KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA----SLQVDSKFNDLDWSHNN- 79 (416)
T ss_dssp --CEEEESCBCCBCSS---SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC----CCCCSSCEEEEEECSSS-
T ss_pred hHhhhhhcceEeeCCC---CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE----EEecCCceEEEEECCCC-
Confidence 3444568999999999 86 999992111 16999999887754321 221 25789999999999999
Q ss_pred CCCCCeEEEeC-C-cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---
Q 040307 85 TLNPDIVATSG-D-SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI--- 157 (339)
Q Consensus 85 ~~~~~~la~~~-~-~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--- 157 (339)
.+|++++ + .|++|++... .......+.+|. ..|++++|+|.++++|++++.|+.|++||+++++
T Consensus 80 ----~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 80 ----KIIAGALDNGSLELYSTNEANNAINSMARFSNHS-----SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp ----SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS-----SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred ----CeEEEEccCCeEEEeecccccccccchhhccCCc-----cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 7888876 4 9999999872 123677788887 8999999998338999999999999999998876
Q ss_pred ---eeee---eeccCCceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCC---CCCCCeEEEEEecCCCCeE
Q 040307 158 ---LETQ---LVAHDREVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENP---VQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 158 ---~~~~---~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l 226 (339)
.... +..|...|.+++|+ + +.+|++++.|+.|++||+++.+....+.... .+...+.+++|+|++..++
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 3322 35788999999999 5 6899999999999999999987544433221 1167899999999545799
Q ss_pred EEEeeCC---CeEEEEecCCCCCceEEEe-cCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 227 ATVGMDS---NKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 227 ~~~~~d~---~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
++++.++ . |++||++....++..+. +|...|.+++|+| ++ .+|++++.||.|++||+...+
T Consensus 231 ~~~~~d~~~~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~------------ 296 (416)
T 2pm9_A 231 ATATGSDNDPS-ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAE------------ 296 (416)
T ss_dssp EEEECCSSSCC-CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCC------------
T ss_pred EEEECCCCCce-EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCc------------
Confidence 9999998 8 99999998667788888 8999999999999 66 699999999999999999877
Q ss_pred cceeeecccceeEEEEecCCC-CceEEEecCCeEEEEeC
Q 040307 302 EPELCYQSMAEINVVRWSPLE-LDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 302 ~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~d~~v~~w~v 339 (339)
.......|...|.+++|+|++ ..+++++.|+.|++|++
T Consensus 297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 233555789999999999999 66778889999999985
No 29
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.2e-41 Score=288.30 Aligned_cols=284 Identities=13% Similarity=0.107 Sum_probs=222.1
Q ss_pred eccCCeeEEEeeecCCcc-cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC-CCCCCCCCeEE
Q 040307 15 MAQWPISTVAWSVRHDRK-SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP-SEETLNPDIVA 92 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~-~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~~~la 92 (339)
.|...|.+++|+|+ + ++||+|+ .|+.|+||++......... .. .+|...|.+++|+| ++ .+|+
T Consensus 71 ~h~~~v~~~~~~~~---~~~~l~s~~----~dg~i~iwd~~~~~~~~~~--~~-~~h~~~v~~~~~~~~~~-----~~l~ 135 (383)
T 3ei3_B 71 PFDRRVTSLEWHPT---HPTTVAVGS----KGGDIILWDYDVQNKTSFI--QG-MGPGDAITGMKFNQFNT-----NQLF 135 (383)
T ss_dssp CCSSCEEEEEECSS---CTTEEEEEE----BTSCEEEEETTSTTCEEEE--CC-CSTTCBEEEEEEETTEE-----EEEE
T ss_pred CCCCCEEEEEECCC---CCCEEEEEc----CCCeEEEEeCCCcccceee--ec-CCcCCceeEEEeCCCCC-----CEEE
Confidence 46789999999999 8 8999999 7999999888754433222 11 36999999999999 55 7888
Q ss_pred EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
+++ | .|++||+.+. ....+..+. .+...|.+++|+| ++++|++++.|+.|++||+ +++.+..+..|...|.
T Consensus 136 s~~~d~~i~iwd~~~~---~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS---VIQVFAKTD--SWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEETTTEEEEEETTSC---EEEEEECCC--CSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEE
T ss_pred EEeCCCEEEEEECCCC---ceEEEeccC--CCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEE
Confidence 876 5 9999999874 344444332 1227899999998 9999999999999999999 5777888889999999
Q ss_pred EEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 171 DISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 171 ~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
+++|+ ++. +|++++.|+.|++||+++.+..........|...+.+++|+|.++++|++++.|+. |++||++. ....
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~-~~~~ 286 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYD-WSKP 286 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTB-TTSC
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCC-Cccc
Confidence 99999 566 89999999999999999843211111111267899999999868899999999998 99999987 4444
Q ss_pred EEEecCC-----------------CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec--
Q 040307 249 VVLSKHE-----------------GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ-- 308 (339)
Q Consensus 249 ~~~~~~~-----------------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-- 308 (339)
..+..|. ..+..++|+|++ ++ +++.|+.|++||+...+ ++ ....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~-------------~~~~l~~~~ 350 (383)
T 3ei3_B 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGG-------------LVHQLRDPN 350 (383)
T ss_dssp SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCC-------------EEEEECBTT
T ss_pred cccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCc-------------eeeeecCCC
Confidence 5555443 234446677776 34 77799999999999877 33 3333
Q ss_pred ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 309 SMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|...+..++|+|+++.|++++ |+.|++|++
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred CCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 567788889999999777775 999999986
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-40 Score=280.51 Aligned_cols=281 Identities=12% Similarity=0.136 Sum_probs=236.6
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..|..+|++++|+|+ +++|++|+ .||.|++|++.... ... .+ ..|...|.+++|+|++ ++|++
T Consensus 29 ~~h~~~v~~~~~s~~---~~~l~~~~----~dg~i~vwd~~~~~--~~~--~~-~~h~~~v~~~~~~~~~-----~~l~s 91 (369)
T 3zwl_B 29 TGHERPLTQVKYNKE---GDLLFSCS----KDSSASVWYSLNGE--RLG--TL-DGHTGTIWSIDVDCFT-----KYCVT 91 (369)
T ss_dssp ECCSSCEEEEEECTT---SCEEEEEE----SSSCEEEEETTTCC--EEE--EE-CCCSSCEEEEEECTTS-----SEEEE
T ss_pred EEeeceEEEEEEcCC---CCEEEEEe----CCCEEEEEeCCCch--hhh--hh-hhcCCcEEEEEEcCCC-----CEEEE
Confidence 347899999999999 99999999 79999998876432 222 22 5799999999999999 78888
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCe---------
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDREI--------- 157 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~--------- 157 (339)
++ + .|++||+.+++ ....+. +. ..|.+++|+| ++++|++++.+ +.|++||++...
T Consensus 92 ~~~dg~i~iwd~~~~~--~~~~~~-~~-----~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQ--CVATWK-SP-----VPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp EETTTEEEEEETTTCC--EEEEEE-CS-----SCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred EeCCCeEEEEECCCCc--EEEEee-cC-----CCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 87 4 99999999887 666665 44 7899999998 99999999999 999999997653
Q ss_pred --eeeeeeccCC--ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 158 --LETQLVAHDR--EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 158 --~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
....+..|.. .+.+++|+ ++++|++++.|+.|++||+++.......... |...+.+++|+| ++.+|++++.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~d 239 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL--HEKSISDMQFSP-DLTYFITSSRD 239 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC--CSSCEEEEEECT-TSSEEEEEETT
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec--CCCceeEEEECC-CCCEEEEecCC
Confidence 3334445555 89999999 7889999999999999999985444444444 678999999998 89999999999
Q ss_pred CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC--------------cEEEEEecCCCCCCCCCCCC
Q 040307 233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS--------------RALIWEVVGPGYRSGNGGPS 298 (339)
Q Consensus 233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--------------~v~iwd~~~~~~~~~~~~~~ 298 (339)
+. |++||++. .+.+..+. +...+..++|+|++ .++++++.++ .+++||+....
T Consensus 240 ~~-i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--------- 306 (369)
T 3zwl_B 240 TN-SFLVDVST-LQVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE--------- 306 (369)
T ss_dssp SE-EEEEETTT-CCEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCC---------
T ss_pred ce-EEEEECCC-Cceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCc---------
Confidence 98 99999987 56666666 68899999999999 5999999888 89999998877
Q ss_pred CcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 299 GDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.......|...|++++|+|+++.|++++.|+.|++|++
T Consensus 307 ---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 307 ---EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ---EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred ---chhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 23355678999999999999999999999999999984
No 31
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.5e-40 Score=280.89 Aligned_cols=300 Identities=12% Similarity=0.131 Sum_probs=225.2
Q ss_pred eeeeeccCCeeEEEeeecCCcccEEEEeeec---cccCCeEEEEecCCCCCcccce----eeE-eecCCCCceEEEEcCC
Q 040307 11 VHTYMAQWPISTVAWSVRHDRKSRLAVGSFL---EDYSNKIELVNFNPETSDFSAD----NRL-IFDHPYTPTNIAFFPS 82 (339)
Q Consensus 11 ~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~---~~~~~~i~i~~~~~~~~~~~~~----~~~-~~~~~~~v~~l~~~~~ 82 (339)
-..+....||++++|+|+ +++||+|+.. .+.++.|++|+++......... ..+ ...|...|.++++++
T Consensus 8 ~~~~~~g~PV~sv~fs~d---g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~- 83 (365)
T 4h5i_A 8 TASYNVGYPAYGAKFLNN---DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK- 83 (365)
T ss_dssp EEEEECSSCEEEEEEEET---TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET-
T ss_pred eeecCCCCCEEEEEEeCC---CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC-
Confidence 345566789999999999 9999998721 1124579999988665432211 111 136778899888765
Q ss_pred CCCCCCCeEEEe-----------C-C-cEEEEeecCCcc--eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE--eCC
Q 040307 83 EETLNPDIVATS-----------G-D-SLRLWEIHDDRT--ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC--SVD 145 (339)
Q Consensus 83 ~~~~~~~~la~~-----------~-~-~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~d 145 (339)
..+++| + + .+++|++..... .................+..++|+| ++++++++ +.|
T Consensus 84 ------~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d 156 (365)
T 4h5i_A 84 ------GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVP 156 (365)
T ss_dssp ------TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSS
T ss_pred ------CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCC
Confidence 344443 2 3 799999877541 1222222222222235688999999 99987654 478
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
++|+|||+++++.+..+. |...|.+++|+ +++++++++. +.+.+|+..+++..... ....|...+.+++|+| ++.
T Consensus 157 ~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~fsp-dg~ 232 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARK-TDFDKNWSLSKINFIA-DDT 232 (365)
T ss_dssp CEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEE-CCCCTTEEEEEEEEEE-TTE
T ss_pred CEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeee-ecCCCCCCEEEEEEcC-CCC
Confidence 999999999999888885 78889999999 7888888875 56777777776643332 2224677899999999 899
Q ss_pred eEEEEeeCCC---eEEEEecCCCCC---ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC
Q 040307 225 FMATVGMDSN---KVVVLDIRFPTN---PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS 298 (339)
Q Consensus 225 ~l~~~~~d~~---~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 298 (339)
++++++.++. .+++||+..... ....+.+|...|++++|+|++ ++||+|+.|+.|+|||+.+.+
T Consensus 233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~--------- 302 (365)
T 4h5i_A 233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS--------- 302 (365)
T ss_dssp EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE---------
T ss_pred EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc---------
Confidence 9999998873 378888875332 134577899999999999999 699999999999999999877
Q ss_pred Cccccee--eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 299 GDVEPEL--CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 299 ~~~~~~~--~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
++. ..+|...|++++|+||+++|++++.|++||||+|
T Consensus 303 ----~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 303 ----MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp ----EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred ----EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 443 3479999999999999999999999999999986
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.6e-41 Score=296.29 Aligned_cols=287 Identities=17% Similarity=0.173 Sum_probs=221.0
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.+...|+||+|+|. ++.+||+|+ .||.|+||++......... .+ .+|.+.|++|+|+|.+. .+|+++
T Consensus 117 ~~~~~V~~l~~~P~--~~~~lasGs----~dg~i~lWd~~~~~~~~~~--~~-~gH~~~V~~l~f~p~~~----~~l~s~ 183 (435)
T 4e54_B 117 PFDRRATSLAWHPT--HPSTVAVGS----KGGDIMLWNFGIKDKPTFI--KG-IGAGGSITGLKFNPLNT----NQFYAS 183 (435)
T ss_dssp ECSSCEEEEEECSS--CTTCEEEEE----TTSCEEEECSSCCSCCEEE--CC-CSSSCCCCEEEECSSCT----TEEEEE
T ss_pred CCCCCEEEEEEeCC--CCCEEEEEe----CCCEEEEEECCCCCceeEE--Ec-cCCCCCEEEEEEeCCCC----CEEEEE
Confidence 35678999999995 267999999 7999999887755443322 22 58999999999998432 788888
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ | +|++||+++.. ...+..+. .....+.+++|+| ++++|++|+.||.|++||++ ++.+..+.+|...|+++
T Consensus 184 s~D~~v~iwd~~~~~---~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 184 SMEGTTRLQDFKGNI---LRVFASSD--TINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp CSSSCEEEEETTSCE---EEEEECCS--SCSCCCCCEEEET-TTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred eCCCEEEEeeccCCc---eeEEeccC--CCCccEEEEEECC-CCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 7 5 99999998764 22222221 1125678999998 99999999999999999996 45677788999999999
Q ss_pred Eec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 173 SWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 173 ~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
+|+ + ..+|++++.|+.|++||++..+....+.....|...|.+++|+| ++.+|++++.|+. |++||++. ......
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~-i~iwd~~~-~~~~~~ 333 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSE-IRVYSASQ-WDCPLG 333 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSC-EEEEESSS-SSSEEE
T ss_pred eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCE-EEEEECCC-CccceE
Confidence 999 3 45888999999999999998775554444445788999999998 9999999999999 99999987 444555
Q ss_pred EecCCC------CeeEEEeccCCCCeEEEEe------------CCCcEEEEEecCCCCCCCCCCCCCcccce--eeeccc
Q 040307 251 LSKHEG------SVNGISWAPLYGRRLCSVA------------DDSRALIWEVVGPGYRSGNGGPSGDVEPE--LCYQSM 310 (339)
Q Consensus 251 ~~~~~~------~v~~~~~~p~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~ 310 (339)
+..|.. .+....|+|++. ++++++ .++.|++||..++. .+ ....|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~-------------~~~~l~~~~~ 399 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK-------------MMCQLYDPES 399 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSSCC-------------EEEEECCSSC
T ss_pred EecccccccccceeEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCCCc-------------EEEEEeCCCC
Confidence 555432 234567777773 555554 34579999998877 33 233677
Q ss_pred ceeEEE-EecCCCCceEEEecCCeEEEEeC
Q 040307 311 AEINVV-RWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 311 ~~i~~~-~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..|.++ +|+|+|..|++ +.|+.|+||++
T Consensus 400 ~~v~s~~~fspdg~~las-g~d~~i~iW~~ 428 (435)
T 4e54_B 400 SGISSLNEFNPMGDTLAS-AMGYHILIWSQ 428 (435)
T ss_dssp CCCCCEEEECTTSSCEEE-ECSSEEEECCC
T ss_pred CcEEEEEEECCCCCEEEE-EcCCcEEEEEC
Confidence 888887 69999986554 56889999985
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-40 Score=279.66 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=215.3
Q ss_pred ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
+.+..+. +...|.+++|+|+ +++||+|+ .|+.|++|++............+ .+|.+.|.++.|++++
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~----~d~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~---- 155 (340)
T 1got_B 88 NKVHAIPLRSSWVMTCAYAPS---GNYVACGG----LDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDN---- 155 (340)
T ss_dssp CEEEEEECSSSCEEEEEECTT---SSEEEEEE----TTCEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETT----
T ss_pred CcceEeecCCccEEEEEECCC---CCEEEEEe----CCCeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCC----
Confidence 3344443 5678999999999 99999999 79999999987654433332233 6899999999999988
Q ss_pred CCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 88 PDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 88 ~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
.+++++.| .|++||+.+++ ....+.+|. ..|.+++|+| ++++|++|+.|+.|++||+++++....+.+|.
T Consensus 156 -~l~s~s~d~~i~~wd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~ 226 (340)
T 1got_B 156 -QIVTSSGDTTCALWDIETGQ--QTTTFTGHT-----GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp -EEEEEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred -cEEEEECCCcEEEEECCCCc--EEEEEcCCC-----CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence 65555556 99999999887 778888888 8999999998 99999999999999999999999999999999
Q ss_pred CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
..|++++|+ ++++|++++.|+.|++||++..+.... +....+...+.+++|+| ++++|++|+.|+. |++||+.. .
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~-i~vwd~~~-~ 302 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSK-SGRLLLAGYDDFN-CNVWDALK-A 302 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECT-TSSEEEEEETTSE-EEEEETTT-C
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-EccCCcccceEEEEECC-CCCEEEEECCCCe-EEEEEccc-C
Confidence 999999999 789999999999999999998764433 33323445799999998 9999999999998 99999987 6
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
..+..+.+|...|.+++|+|++ .+|++|+.|+.|+|||
T Consensus 303 ~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 DRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred cEeeEeecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence 6788999999999999999999 6999999999999997
No 34
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=9.4e-41 Score=290.88 Aligned_cols=316 Identities=19% Similarity=0.318 Sum_probs=244.3
Q ss_pred ceeeeeeccCCeeEEEeeecCC-------cccEEEEeeeccccCCeEEEEecCCC------------------------C
Q 040307 9 PGVHTYMAQWPISTVAWSVRHD-------RKSRLAVGSFLEDYSNKIELVNFNPE------------------------T 57 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~-------~~~~la~g~~~~~~~~~i~i~~~~~~------------------------~ 57 (339)
..+.++....|..++.|.|+.. ...+|++|++..+..+.|.+++++.. .
T Consensus 37 ~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~ 116 (430)
T 2xyi_A 37 DLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVC 116 (430)
T ss_dssp EEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC-------------------------
T ss_pred HHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCC
Confidence 4566777889999999999832 12679999875556788999876410 1
Q ss_pred CcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecC--------CcceeEEEeecCCCccCCCCEE
Q 040307 58 SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHD--------DRTELKSLLNSNKTSEFSSAIT 127 (339)
Q Consensus 58 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~--------~~~~~~~~~~~~~~~~~~~~i~ 127 (339)
+.+.. .....|.+.|++++|+|++. .+||+++. .|++|++.. +.......+.+|. ..|+
T Consensus 117 ~~~~~--~~~~~h~~~v~~l~~~p~~~----~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~ 185 (430)
T 2xyi_A 117 GKIEI--EIKINHEGEVNRARYMPQNA----CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----KEGY 185 (430)
T ss_dssp -CEEE--EEEEEESSCCSEEEEETTEE----EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----SCCC
T ss_pred CceEE--EEEEcCCCcEEEEEECCCCC----cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----CCeE
Confidence 11211 23468999999999999832 78998874 999999986 2234677788888 8999
Q ss_pred EEEEcCCCCC-EEEEEeCCCeEEEEECCCCee-------eeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCC
Q 040307 128 SFDWAGFDTR-RVATCSVDTTCVIWDIDREIL-------ETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDK 197 (339)
Q Consensus 128 ~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~ 197 (339)
+++|+| ++. +|++|+.||.|++||+.++.. ...+..|...|.+++|+ ++.+|++++.|+.|++||++..
T Consensus 186 ~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 186 GLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp CEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred EEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999998 666 999999999999999987321 45566899999999999 4789999999999999999987
Q ss_pred c--ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307 198 E--RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 198 ~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 275 (339)
. ....... .|...|.+++|+|....++++|+.|+. |++||++....++..+..|...|.+++|+|+++.+|++++
T Consensus 265 ~~~~~~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 265 NTSKPSHTVD--AHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp CSSSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCCcceeEee--cCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence 4 2222333 377899999999944457899999998 9999999877889999999999999999999866899999
Q ss_pred CCCcEEEEEecCCCCCCC-CCCCCCcccce-eeecccceeEEEEecCCCC-ceEEEecCCeEEEEeC
Q 040307 276 DDSRALIWEVVGPGYRSG-NGGPSGDVEPE-LCYQSMAEINVVRWSPLEL-DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 276 ~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~-~l~~~~~d~~v~~w~v 339 (339)
.|+.|+|||+........ ..........+ ...+|...|++++|+|+++ .+++++.||.|++|++
T Consensus 342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 999999999988441000 00000000122 3346788999999999999 5678889999999985
No 35
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.6e-41 Score=289.22 Aligned_cols=241 Identities=18% Similarity=0.240 Sum_probs=217.4
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|..+|++++|+|++ .+|++|+ | .|+|||+.+++ ....+.+|. ..|++++|+| ++++|++|+.|
T Consensus 105 ~gh~~~V~~~~~~p~~-----~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h~-----~~V~~v~~~~-~~~~l~sgs~D 171 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVF-----SVMVSASEDATIKVWDYETGD--FERTLKGHT-----DSVQDISFDH-SGKLLASCSAD 171 (410)
T ss_dssp ECCSSCEEEEEECSSS-----SEEEEEESSSCEEEEETTTCC--CCEEECCCS-----SCEEEEEECT-TSSEEEEEETT
T ss_pred cccCCcEEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCc--EEEEEeccC-----CcEEEEEEcC-CCCEEEEEeCC
Confidence 6899999999999999 8899887 4 99999999987 777888888 8999999998 99999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
++|++||+++++++..+.+|...|.+++|+ ++++|++++.|+.|++||++++.....+ .. |...+.+++|+| ++.
T Consensus 172 ~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~--h~~~v~~~~~~~-~g~ 247 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TG--HREWVRMVRPNQ-DGT 247 (410)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-EC--CSSCEEEEEECT-TSS
T ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eC--CCccEEEEEECC-CCC
Confidence 999999999999999999999999999999 7899999999999999999998754443 33 678999999998 999
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCC-------------------CCeEEEEeCCCcEEEEEe
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY-------------------GRRLCSVADDSRALIWEV 285 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------------~~~l~~~~~dg~v~iwd~ 285 (339)
+|++++.|+. |++||++. ......+..|...|.+++|+|++ ..+|++|+.|+.|++||+
T Consensus 248 ~l~s~s~D~~-v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~ 325 (410)
T 1vyh_C 248 LIASCSNDQT-VRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325 (410)
T ss_dssp EEEEEETTSC-EEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred EEEEEcCCCe-EEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999 99999987 66788899999999999999962 148999999999999999
Q ss_pred cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..+. ......+|...|++++|+|+++++++++.|+.|++|++
T Consensus 326 ~~~~------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 326 STGM------------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp TTTE------------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred CCCc------------eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 8876 23355679999999999999999999999999999985
No 36
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-40 Score=304.68 Aligned_cols=297 Identities=14% Similarity=0.213 Sum_probs=230.1
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.+.|++++|+|+ ++++|++|+ .|+.|+||++...............+|...|.+++|+|++ ++|++|
T Consensus 380 ~H~~~V~~v~~~~~--~~~~l~s~s----~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-----~~l~sg 448 (694)
T 3dm0_A 380 AHTDMVTAIATPID--NADIIVSAS----RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-----QFALSG 448 (694)
T ss_dssp CCSSCEEEEECCTT--CCSEEEEEE----TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-----SEEEEE
T ss_pred cCCceeEEEEecCC--CCCEEEEEe----CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-----CEEEEE
Confidence 58899999999987 257999999 7999999998765433222112236899999999999999 899988
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee---eccCCce
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL---VAHDREV 169 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~v 169 (339)
+ | .|+|||+.+++ ....+.+|. ..|.+++|+| ++++|++|+.|++|++||+......... .+|...|
T Consensus 449 s~Dg~v~vwd~~~~~--~~~~~~~h~-----~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 449 SWDGELRLWDLAAGV--STRRFVGHT-----KDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp ETTSEEEEEETTTTE--EEEEEECCS-----SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred eCCCcEEEEECCCCc--ceeEEeCCC-----CCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 7 5 99999999886 778888888 8999999998 9999999999999999998655433222 4688899
Q ss_pred eEEEec-CC--cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 170 YDISWG-GF--NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 170 ~~~~~~-~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
.+++|+ ++ ..|++++.|+.|++||+++.+.... .. .|...|.+++|+| ++++|++++.|+. |++||++. .+
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-~~--~h~~~v~~v~~sp-dg~~l~sg~~Dg~-i~iwd~~~-~~ 594 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-LA--GHTGYVSTVAVSP-DGSLCASGGKDGV-VLLWDLAE-GK 594 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-EC--CCSSCEEEEEECT-TSSEEEEEETTSB-CEEEETTT-TE
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-Ec--CCCCCEEEEEEeC-CCCEEEEEeCCCe-EEEEECCC-Cc
Confidence 999999 33 5899999999999999998774433 33 3778999999998 8999999999999 99999987 55
Q ss_pred ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC---CCCCC----CCcccceeeecccceeEEEEec
Q 040307 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS---GNGGP----SGDVEPELCYQSMAEINVVRWS 319 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~i~~~~~~ 319 (339)
.+..+.. ...|.+++|+|++ .+|++++ ++.|+|||++...... ..... .....+.....+...+++++|+
T Consensus 595 ~~~~~~~-~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 671 (694)
T 3dm0_A 595 KLYSLEA-NSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671 (694)
T ss_dssp EEECCBC-SSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred eEEEecC-CCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence 5555554 5689999999998 4666655 5679999998765100 00000 0000000011122347899999
Q ss_pred CCCCceEEEecCCeEEEEeC
Q 040307 320 PLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 320 p~~~~l~~~~~d~~v~~w~v 339 (339)
|++++|++++.||.|++|++
T Consensus 672 pdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 672 ADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp TTSSEEEEEETTSEEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEEec
Confidence 99999999999999999986
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-40 Score=288.32 Aligned_cols=290 Identities=15% Similarity=0.227 Sum_probs=238.3
Q ss_pred ceeeeeeccCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEec----CCCCC------cccceeeEe-----ecCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNF----NPETS------DFSADNRLI-----FDHPY 72 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~----~~~~~------~~~~~~~~~-----~~~~~ 72 (339)
+.+..+.|..+|.+++|+|+ +. +||+|+ .|+.|++|++ ..... .......+. ..|..
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~---~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPL---DESILAYGE----KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp EECEEEEECSCCSEEEECSS---CTTEEEEEE----TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred hheeeeeccCceEEEEECCC---CCcEEEEec----CCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence 44555667799999999999 99 999999 7999999998 54431 111100010 11577
Q ss_pred CceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Q 040307 73 TPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI 150 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i 150 (339)
.|.+++|+|++ ++|++++ + .|++|+ .+++ ....+..|. ..|.+++|+| ++++|++++.|+.|++
T Consensus 110 ~v~~~~~s~~~-----~~l~~~~~dg~i~i~~-~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDG-----NSIVTGVENGELRLWN-KTGA--LLNVLNFHR-----APIVSVKWNK-DGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTS-----SEEEEEETTSCEEEEE-TTSC--EEEEECCCC-----SCEEEEEECT-TSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCC-----CEEEEEeCCCeEEEEe-CCCC--eeeeccCCC-----ccEEEEEECC-CCCEEEEEecCCeEEE
Confidence 99999999999 8888887 4 999999 3443 677788887 8999999998 9999999999999999
Q ss_pred EECCCCeeeeeeeccCCc---------------eeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307 151 WDIDREILETQLVAHDRE---------------VYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLR 215 (339)
Q Consensus 151 ~d~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 215 (339)
||+++++.+..+..+... +.+++|+++..+++++.++.|++||+++.+....+ . .|...+.+
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~-~--~~~~~i~~ 252 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKL-I--GHHGPISV 252 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEE-C--CCSSCEEE
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeee-c--cCCCceEE
Confidence 999999988888777766 89999997678999999999999999988654443 2 36789999
Q ss_pred EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCC
Q 040307 216 LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG 295 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 295 (339)
++|+| ++++|++++.++. |++||++. .+++..+..|...|.+++|+|++ +|++++.|+.|++||+....
T Consensus 253 ~~~~~-~~~~l~~~~~d~~-i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~------ 321 (425)
T 1r5m_A 253 LEFND-TNKLLLSASDDGT-LRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT------ 321 (425)
T ss_dssp EEEET-TTTEEEEEETTSC-EEEECSSS-BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE------
T ss_pred EEECC-CCCEEEEEcCCCE-EEEEECCC-CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc------
Confidence 99998 8899999999999 99999987 66788888999999999999997 89999999999999998876
Q ss_pred CCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 296 GPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 296 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.......|...|.+++|+|+++.+++++.|+.|++|++
T Consensus 322 ------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 322 ------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp ------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 22345568889999999999998999999999999985
No 38
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.4e-40 Score=274.24 Aligned_cols=250 Identities=20% Similarity=0.265 Sum_probs=207.6
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSV 144 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~ 144 (339)
.+|.+.|.+++|+|++ ++||+|+ | +|+||++.........++.+|. .+|++++|+|. ++++|++|+.
T Consensus 6 ~~h~~~V~~~~~s~~g-----~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~-----~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYG-----KRMATCSSDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CSCSSCEEEEEECTTS-----SEEEEEETTSCEEEEEBCSSCBCCCEEECCCS-----SCEEEEEECCGGGCSEEEEEET
T ss_pred cCCcCceEEEEECCCC-----CEEEEEeCCCEEEEEecCCCCcEEEEEEcccc-----CCeEEEEecCCCcCCEEEEEcC
Confidence 5899999999999999 8999887 5 9999999865444778889998 99999999862 4789999999
Q ss_pred CCeEEEEECCCCe--eeeeeeccCCceeEEEecC---CcEEEEEeCCCcEEEEECCCCcce-eeEEeCCCCCCCeEEEEE
Q 040307 145 DTTCVIWDIDREI--LETQLVAHDREVYDISWGG---FNVFASVSGDCSVRVFDLRDKERS-TIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 145 d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~ 218 (339)
|++|++||+++++ .+..+..|...|.+++|++ +.+|++++.|+.|++||++..... ...... |...+.+++|
T Consensus 76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~--h~~~v~~~~~ 153 (297)
T 2pm7_B 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASW 153 (297)
T ss_dssp TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC--CSSCEEEEEE
T ss_pred CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec--ccCccceEee
Confidence 9999999998774 4566778999999999994 689999999999999999876422 233333 7789999999
Q ss_pred ecCC------------CCeEEEEeeCCCeEEEEecCCCCC---ceEEEecCCCCeeEEEeccCC--CCeEEEEeCCCcEE
Q 040307 219 NKAD------------PRFMATVGMDSNKVVVLDIRFPTN---PVVVLSKHEGSVNGISWAPLY--GRRLCSVADDSRAL 281 (339)
Q Consensus 219 ~p~~------------~~~l~~~~~d~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~v~ 281 (339)
+|.. +++|++|+.|+. |++||++.... ....+.+|...|.+++|+|++ ..+|++++.|++|+
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp CCCC------------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence 9842 579999999999 99999986432 456788999999999999985 36999999999999
Q ss_pred EEEecCCCCCCCCCCCCCcccceee--ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 282 IWEVVGPGYRSGNGGPSGDVEPELC--YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|||++.... ....... ..|...|.+++|+|+++.|++++.|+.|++|++
T Consensus 233 iWd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 233 IWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp EEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred EEEeCCCCC---------ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 999987540 0011122 357788999999999999999999999999973
No 39
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-40 Score=287.23 Aligned_cols=292 Identities=12% Similarity=0.125 Sum_probs=232.7
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc--ccceeeEeecCCCCceEEEEcCC----C---CC
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD--FSADNRLIFDHPYTPTNIAFFPS----E---ET 85 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~----~---~~ 85 (339)
.|..+|++++|+|. +|++|+ .||.|+||++...... ......+ ..|...|.+++|+|+ + .
T Consensus 14 ~h~~~i~~~~~~~~-----~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~- 82 (397)
T 1sq9_A 14 AHDADIFSVSACNS-----FTVSCS----GDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELC- 82 (397)
T ss_dssp CSSSCEEEEEECSS-----EEEEEE----TTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEE-
T ss_pred hhhcCeEEEEecCC-----eEEEEc----CCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCcccc-
Confidence 47899999999885 899999 7999999888765411 1111133 589999999999998 5 3
Q ss_pred CCCCeEEEeC-C-cEEEEeecCCcc---eeEEEeecCCCccCCCCEEEEEEc----CCCCCE-EEEEeCCCeEEEEECCC
Q 040307 86 LNPDIVATSG-D-SLRLWEIHDDRT---ELKSLLNSNKTSEFSSAITSFDWA----GFDTRR-VATCSVDTTCVIWDIDR 155 (339)
Q Consensus 86 ~~~~~la~~~-~-~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~-l~~~~~d~~v~i~d~~~ 155 (339)
+|++++ + .|++|++.+++. .....+..|........|.+++|+ | ++++ |++++.||.|++||+++
T Consensus 83 ----~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 83 ----LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp ----EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred ----EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCc
Confidence 555554 5 999999998761 016666666200001789999999 8 8899 99999999999999988
Q ss_pred ------Ceeee-----eee-------ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCC---CCCe
Q 040307 156 ------EILET-----QLV-------AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQ---DCPL 213 (339)
Q Consensus 156 ------~~~~~-----~~~-------~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~v 213 (339)
++.+. .+. .|...|.+++|+ ++ +|++++.|+.|++||+++.+....+.....| ...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 66655 663 488899999999 67 9999999999999999987755444331224 6899
Q ss_pred EEEEEecCCCCeEEEEeeC---CCeEEEEecCCCCCceEEEec-------------CCCCeeEEEeccCCCCeEEEEeCC
Q 040307 214 LRLEWNKADPRFMATVGMD---SNKVVVLDIRFPTNPVVVLSK-------------HEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~~~d---~~~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
.+++|+| ++++|++++.+ +. |++||++. .+++..+.. |...|.+++|+|++ .+|++++.|
T Consensus 237 ~~i~~~~-~~~~l~~~~~d~~~g~-i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 312 (397)
T 1sq9_A 237 RSVKFSP-QGSLLAIAHDSNSFGC-ITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD 312 (397)
T ss_dssp EEEEECS-STTEEEEEEEETTEEE-EEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred ceEEECC-CCCEEEEEecCCCCce-EEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence 9999998 89999999999 88 99999987 677888888 99999999999999 699999999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCcccceeee------cc---------------cceeEEEEecCCC----------CceE
Q 040307 278 SRALIWEVVGPGYRSGNGGPSGDVEPELCY------QS---------------MAEINVVRWSPLE----------LDWI 326 (339)
Q Consensus 278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~~p~~----------~~l~ 326 (339)
|.|++||+...+ ...... .| ...|++++|+|++ +.|+
T Consensus 313 g~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 313 GKLRFWDVKTKE------------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SEEEEEETTTTE------------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CeEEEEEcCCCc------------eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 999999998876 122333 45 8899999999998 6788
Q ss_pred EEecCCeEEEEeC
Q 040307 327 AIAFVNKLQLLKV 339 (339)
Q Consensus 327 ~~~~d~~v~~w~v 339 (339)
+++.|+.|++|++
T Consensus 381 s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 381 CVCLDRSIRWFRE 393 (397)
T ss_dssp EEETTTEEEEEEE
T ss_pred EecCCCcEEEEEc
Confidence 9999999999985
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-41 Score=290.11 Aligned_cols=298 Identities=15% Similarity=0.170 Sum_probs=222.1
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+..+|.+++|+|+ +++||+|+ .|+.|+||++......... .+ .+|...|.+++|+|++ ++|++++
T Consensus 10 ~~~~v~~~~~s~~---g~~l~~~~----~d~~i~iw~~~~~~~~~~~--~~-~~h~~~v~~~~~s~~~-----~~l~s~s 74 (377)
T 3dwl_C 10 LPKPSYEHAFNSQ---RTEFVTTT----ATNQVELYEQDGNGWKHAR--TF-SDHDKIVTCVDWAPKS-----NRIVTCS 74 (377)
T ss_dssp CSSCCSCCEECSS---SSEEECCC----SSSCBCEEEEETTEEEECC--CB-CCCSSCEEEEEECTTT-----CCEEEEE
T ss_pred CCCcEEEEEECCC---CCEEEEec----CCCEEEEEEccCCceEEEE--EE-ecCCceEEEEEEeCCC-----CEEEEEe
Confidence 4679999999999 99999998 7999999888754212222 23 5799999999999999 7888887
Q ss_pred -C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe---eeeeeec-cCCc
Q 040307 96 -D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI---LETQLVA-HDRE 168 (339)
Q Consensus 96 -~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~-~~~~ 168 (339)
| .|++||+.+++ ......+..|. ..|.+++|+| ++++|++++.|+.|++||+++++ ....+.. |...
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLN-----RAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCS-----SCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred CCCeEEEEEcCCCCceeeeeEecccC-----CceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence 5 99999998875 44566677777 8999999998 99999999999999999998877 3666766 9999
Q ss_pred eeEEEec-CCcEEEEEeCCCcEEEEECCCCc---------------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 169 VYDISWG-GFNVFASVSGDCSVRVFDLRDKE---------------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 169 v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
|.+++|+ ++++|++++.|+.|++||++... ........ .|...|.+++|+| ++++|++++.|
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d 226 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHD 226 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETT
T ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCC
Confidence 9999999 78999999999999999996432 01111222 5778999999998 89999999999
Q ss_pred CCeEEEEecCCCCCc---eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC---CCCCC----CC-----
Q 040307 233 SNKVVVLDIRFPTNP---VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY---RSGNG----GP----- 297 (339)
Q Consensus 233 ~~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~----~~----- 297 (339)
+. |++||++....+ +..+..|...|.+++|+|++ ++|++++.++.+ +|+...... ...+. ..
T Consensus 227 ~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T 3dwl_C 227 SS-VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTG 303 (377)
T ss_dssp TE-EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSS
T ss_pred Cc-EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccc
Confidence 98 999999984432 67888999999999999999 688888766555 776653220 00000 00
Q ss_pred --------CCc--------------------ccceeeecccceeEEEEecCCCCc----eEEEecCCeEEEEeC
Q 040307 298 --------SGD--------------------VEPELCYQSMAEINVVRWSPLELD----WIAIAFVNKLQLLKV 339 (339)
Q Consensus 298 --------~~~--------------------~~~~~~~~~~~~i~~~~~~p~~~~----l~~~~~d~~v~~w~v 339 (339)
... ........|...|+++++.+.... +++++.||.|++|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 304 NTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 000011238899999998876544 889999999999986
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-40 Score=288.62 Aligned_cols=288 Identities=15% Similarity=0.177 Sum_probs=232.0
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
..+....|+|+ +++||+|+ .|+.|++|++.. ..... ....|...|.+++|+|++ ++|++++ |
T Consensus 98 ~~~~~~~~~~~---~~~l~~~~----~dg~i~iwd~~~--~~~~~---~~~~h~~~v~~~~~~~~~-----~~l~s~s~d 160 (420)
T 3vl1_A 98 DYTAVDTAKLQ---MRRFILGT----TEGDIKVLDSNF--NLQRE---IDQAHVSEITKLKFFPSG-----EALISSSQD 160 (420)
T ss_dssp CEEEEEEECSS---SCEEEEEE----TTSCEEEECTTS--CEEEE---ETTSSSSCEEEEEECTTS-----SEEEEEETT
T ss_pred CceEEEEEecC---CCEEEEEE----CCCCEEEEeCCC--cceee---ecccccCccEEEEECCCC-----CEEEEEeCC
Confidence 34445578899 99999999 799999977653 33332 114899999999999999 8888887 4
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec---cCCceeE-
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA---HDREVYD- 171 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~v~~- 171 (339)
.|++||+.+++ ....+.+|. ..|.+++|+| ++++|++++.|+.|++||+++++.+..+.. +...+.+
T Consensus 161 ~~i~iwd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~ 232 (420)
T 3vl1_A 161 MQLKIWSVKDGS--NPRTLIGHR-----ATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 232 (420)
T ss_dssp SEEEEEETTTCC--CCEEEECCS-----SCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEE
T ss_pred CeEEEEeCCCCc--CceEEcCCC-----CcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEE
Confidence 99999999887 677888888 8999999998 999999999999999999999998888764 3334444
Q ss_pred --------------------EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC-eEEEE
Q 040307 172 --------------------ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR-FMATV 229 (339)
Q Consensus 172 --------------------~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~ 229 (339)
++|+ ++++|++++.||.|++||+++.+....+... |...+.+++|+| ++. +|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~l~~g 309 (420)
T 3vl1_A 233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--FTCSCNSLTVDG-NNANYIYAG 309 (420)
T ss_dssp EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT--TSSCEEEEEECS-SCTTEEEEE
T ss_pred EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc--cCCCceeEEEeC-CCCCEEEEE
Confidence 4556 6789999999999999999998765555443 678999999999 666 99999
Q ss_pred eeCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec
Q 040307 230 GMDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ 308 (339)
Q Consensus 230 ~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 308 (339)
+.|+. |++||++....++..+.. |...|.++.+ |++ .+|++++.|+.|++|++.... .+... .....+.....
T Consensus 310 ~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~-~~~~~--~~~~~~~~~~~ 383 (420)
T 3vl1_A 310 YENGM-LAQWDLRSPECPVGEFLINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPE-SERPA--IEFETPTFLVS 383 (420)
T ss_dssp ETTSE-EEEEETTCTTSCSEEEEESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTT-CCSCE--ECTTSCEEECC
T ss_pred eCCCe-EEEEEcCCCcCchhhhhccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCC-CCccc--eeccCccEEcc
Confidence 99998 999999986677788877 6667888855 566 599999999999999998854 11100 00012335567
Q ss_pred ccceeEEEEecCCCC---ceEEEecCCeEEEEeC
Q 040307 309 SMAEINVVRWSPLEL---DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 309 ~~~~i~~~~~~p~~~---~l~~~~~d~~v~~w~v 339 (339)
|...|.+++|+|+++ .+++++.++.+.+|++
T Consensus 384 ~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 384 NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred CCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 888999999999998 7999999999999985
No 42
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-39 Score=292.51 Aligned_cols=274 Identities=19% Similarity=0.287 Sum_probs=234.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|..+|.+++|+|+ ++.|++++ .|+.|++|+.+ ..... .+ .+|...|.+++|+|++ .+|++++
T Consensus 261 ~~~~v~~v~~~~d---~~~l~~~~----~d~~i~~w~~~--~~~~~---~~-~~h~~~v~~~~~~~~~-----~~l~t~~ 322 (577)
T 2ymu_A 261 HSSSVNGVAFRPD---GQTIASAS----DDKTVKLWNRN--GQLLQ---TL-TGHSSSVWGVAFSPDG-----QTIASAS 322 (577)
T ss_dssp CSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETT--SCEEE---EE-CCCSSCEEEEEECTTS-----SEEEEEE
T ss_pred CCCCEEEEEEcCC---CCEEEEEe----CCCEEEEEeCC--CcEEE---EE-ecCCCCeEEEEECCCC-----CEEEEEe
Confidence 6789999999999 99999999 79999998753 22222 22 6899999999999999 8888887
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
+ .|++|+.... ....+.+|. ..|.+++|+| ++++|++++.|+.|++||. +++.+..+.+|...|.+++
T Consensus 323 ~d~~i~~w~~~~~---~~~~~~~~~-----~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~ 392 (577)
T 2ymu_A 323 DDKTVKLWNRNGQ---HLQTLTGHS-----SSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 392 (577)
T ss_dssp TTSCEEEEETTSC---EEEEECCCS-----SCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEE
T ss_pred CCCeEEEEeCCCC---eeEEEeCCC-----CCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEE
Confidence 4 9999998765 456677777 8999999998 9999999999999999996 5677888889999999999
Q ss_pred ec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 174 WG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 174 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
|+ ++++|++++.|+.|++||... +... ... .|...|.+++|+| ++++|++++.|+. |++||.. .+.+..+.
T Consensus 393 ~s~dg~~l~~~~~d~~v~~~~~~~-~~~~-~~~--~~~~~v~~~~~s~-d~~~l~~~~~d~~-v~~w~~~--~~~~~~~~ 464 (577)
T 2ymu_A 393 FSPDGQTIASASDDKTVKLWNRNG-QLLQ-TLT--GHSSSVWGVAFSP-DDQTIASASDDKT-VKLWNRN--GQLLQTLT 464 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTTC-CEEE-EEE--CCSSCEEEEEECT-TSSEEEEEETTSE-EEEEETT--SCEEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCC-CEEE-Eec--CCCCCeEEEEECC-CCCEEEEEcCCCE-EEEEECC--CCEEEEEc
Confidence 99 799999999999999999643 3222 233 3678999999998 8999999999998 9999974 56788899
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN 332 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~ 332 (339)
+|...|.+++|+|++ ++|++++.|+.|++||..... .....+|...|++++|+|++++|++++.|+
T Consensus 465 ~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~~~~-------------~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 465 GHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQL-------------LQTLTGHSSSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp CCSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSCE-------------EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCCCCE-------------EEEEeCCCCCEEEEEEcCCCCEEEEEECcC
Confidence 999999999999999 699999999999999954322 345668999999999999999999999999
Q ss_pred eEEEEeC
Q 040307 333 KLQLLKV 339 (339)
Q Consensus 333 ~v~~w~v 339 (339)
.|++|++
T Consensus 531 ~v~lwd~ 537 (577)
T 2ymu_A 531 TVKLWNR 537 (577)
T ss_dssp EEEEECT
T ss_pred EEEEEeC
Confidence 9999974
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=269.70 Aligned_cols=283 Identities=15% Similarity=0.149 Sum_probs=234.1
Q ss_pred CCCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC
Q 040307 6 EKKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE 84 (339)
Q Consensus 6 ~~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 84 (339)
...+.+..+. |..+|.+++| |+ +.+|++|+ .||.|++|++... .... . ...|...|.+++|+|++
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~---~~~l~s~~----~dg~v~vw~~~~~--~~~~--~-~~~~~~~v~~~~~~~~~- 71 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VD---DSKVASVS----RDGTVRLWSKDDQ--WLGT--V-VYTGQGFLNSVCYDSEK- 71 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EE---TTEEEEEE----TTSEEEEEEESSS--EEEE--E-EEECSSCEEEEEEETTT-
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cC---CCEEEEEE----cCCcEEEEECCCC--EEEE--E-eecCCccEEEEEECCCC-
Confidence 3445555554 7899999999 99 99999999 7999999887543 2222 2 26789999999999999
Q ss_pred CCCCCeEEEeC-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 85 TLNPDIVATSG-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 85 ~~~~~~la~~~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
.+|++++ + .|++|++.... ......+..|. ..|.++.|+ ++++++++.|+.|++|| .++....
T Consensus 72 ----~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 72 ----ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ-----GNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp ----TEEEEEETTSCEEEEETTCCTTSCC-CEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred ----CEEEEecCCCeEEEEEeeecCCCCcccchhhcc-----cCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 8888887 4 99999987653 23566777777 899999994 57999999999999999 6677888
Q ss_pred eeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307 162 LVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVL 239 (339)
Q Consensus 162 ~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~ 239 (339)
+..|...+.+++|+ +++.+++++.|+.|++||... ....+.. .+...+.+++|+| ++. +++++.++. |++|
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~--~~~~~i~~~~~~~-~~~-~~~~~~dg~-i~i~ 210 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSG--IHNDVVRHLAVVD-DGH-FISCSNDGL-IKLV 210 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEEECS--SCSSCEEEEEEEE-TTE-EEEEETTSE-EEEE
T ss_pred cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEEEec--cCcccEEEEEEcC-CCe-EEEccCCCe-EEEE
Confidence 88999999999998 588999999999999999332 2222222 2678999999998 666 889999998 9999
Q ss_pred ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307 240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS 319 (339)
Q Consensus 240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 319 (339)
|++. .+++..+..|...|.+++|+|++ .|++++.||.|++||+...+ .......|...|.+++|+
T Consensus 211 d~~~-~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~------------~~~~~~~~~~~i~~~~~~ 275 (313)
T 3odt_A 211 DMHT-GDVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGS------------LKQVITLPAISIWSVDCM 275 (313)
T ss_dssp ETTT-CCEEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCC------------EEEEEECSSSCEEEEEEC
T ss_pred ECCc-hhhhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCc------------eeEEEeccCceEEEEEEc
Confidence 9987 67888999999999999999998 48899999999999999877 233555678899999999
Q ss_pred CCCCceEEEecCCeEEEEeC
Q 040307 320 PLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 320 p~~~~l~~~~~d~~v~~w~v 339 (339)
|+++ +++++.|+.|++|++
T Consensus 276 ~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 276 SNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp TTSC-EEEEETTSCEEEEES
T ss_pred cCCC-EEEEeCCCcEEEEeC
Confidence 9997 888999999999985
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.3e-40 Score=286.71 Aligned_cols=280 Identities=12% Similarity=0.079 Sum_probs=226.9
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D- 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~- 96 (339)
.+++++|+|+ +++|++|+ .|+.|++|++......... ..| ..+....|+|++ ++|++++ +
T Consensus 58 ~~~~~~~s~~---g~~l~~~~----~d~~v~i~d~~~~~~~~~~-----~~~-~~~~~~~~~~~~-----~~l~~~~~dg 119 (420)
T 3vl1_A 58 AGKGNTFEKV---GSHLYKAR----LDGHDFLFNTIIRDGSKML-----KRA-DYTAVDTAKLQM-----RRFILGTTEG 119 (420)
T ss_dssp CCTTCEEEEE---ETTEEEEE----ETTEEEEEECCSEETTTTS-----CSC-CEEEEEEECSSS-----CEEEEEETTS
T ss_pred cccceeeeec---CCeEEEEE----cCCcEEEEEecccceeeEE-----ecC-CceEEEEEecCC-----CEEEEEECCC
Confidence 4568999999 99999999 7999999887654332222 233 445556789999 8888887 4
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG- 175 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~- 175 (339)
.|++||+.+++ ....+.+|. ..|++++|+| ++++|++++.|+.|++||+++++.+..+.+|...|.+++|+
T Consensus 120 ~i~iwd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 120 DIKVLDSNFNL--QREIDQAHV-----SEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp CEEEECTTSCE--EEEETTSSS-----SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CEEEEeCCCcc--eeeeccccc-----CccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999998876 666777887 8999999998 89999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEE---------------------EEecCCCCeEEEEeeCCC
Q 040307 176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRL---------------------EWNKADPRFMATVGMDSN 234 (339)
Q Consensus 176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~---------------------~~~p~~~~~l~~~~~d~~ 234 (339)
++++|++++.|+.|++||+++++....+.....+...+.++ +|+| ++++|++++.|+.
T Consensus 192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 270 (420)
T 3vl1_A 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGV 270 (420)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSC
T ss_pred CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCe
Confidence 78999999999999999999887655544333344445544 4566 7889999999999
Q ss_pred eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeec-ccce
Q 040307 235 KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQ-SMAE 312 (339)
Q Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 312 (339)
|++||++...........|...|.+++|+|++..+|++++.||.|++||++... .+. .... |...
T Consensus 271 -i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 271 -ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE------------CPVGEFLINEGTP 337 (420)
T ss_dssp -EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT------------SCSEEEEESTTSC
T ss_pred -EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc------------CchhhhhccCCCC
Confidence 999999984443444456888999999999994499999999999999999876 223 3333 6778
Q ss_pred eEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 313 INVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 313 i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|..+.| |++..+++++.|+.|++|++
T Consensus 338 v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 338 INNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp EEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred ceEEEe-CCCCEEEEecCCccEEEEec
Confidence 888865 56677889999999999984
No 45
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=275.65 Aligned_cols=257 Identities=21% Similarity=0.336 Sum_probs=208.0
Q ss_pred ecCCC-CceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307 68 FDHPY-TPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCS 143 (339)
Q Consensus 68 ~~~~~-~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 143 (339)
.+|.. .|.+++|+|++ ++||+|+ | .|+||++.++....... ..+|. ..|.+++|+| ++++|++|+
T Consensus 12 ~~h~~~~v~~l~~sp~g-----~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~-----~~v~~~~~sp-~g~~l~s~s 80 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAG-----TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ-----RTVRKVAWSP-CGNYLASAS 80 (345)
T ss_dssp CCSTTSCEEEEEECTTS-----SCEEEEETTSCEEEEEEETTEEEEEEEECSSCS-----SCEEEEEECT-TSSEEEEEE
T ss_pred cCCCCCcEEEEEECCCC-----CEEEEEcCCCeEEEEEcCCCcceeeeeeccccC-----CcEEEEEECC-CCCEEEEEE
Confidence 57877 89999999999 8899887 5 99999998876333332 35676 8999999998 999999999
Q ss_pred CCCeEEEEECCCC--eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307 144 VDTTCVIWDIDRE--ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK 220 (339)
Q Consensus 144 ~d~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p 220 (339)
.|+.|++||++.+ +.+..+.+|...|.+++|+ ++++|++++.|+.|++||++.............|...|.+++|+|
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 9999999999776 3567888999999999999 799999999999999999988764443333344788999999998
Q ss_pred CCCCeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC--C
Q 040307 221 ADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG--P 297 (339)
Q Consensus 221 ~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~ 297 (339)
++.+|++++.|+. |++||.+... .+...+.+|...|++++|+|++ ++|++++.|+.|+||+............ .
T Consensus 161 -~~~~l~s~s~d~~-i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 161 -SQELLASASYDDT-VKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp -SSSCEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred -CCCEEEEEeCCCc-EEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 8999999999999 9999997632 2456788999999999999999 6999999999999999865441100000 0
Q ss_pred CCcccce-eee-cccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 298 SGDVEPE-LCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 298 ~~~~~~~-~~~-~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
....... ... .|...|++++|+|++..+++++.|+.|++|+
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 0000111 112 3788999999999999999999999999996
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-39 Score=274.28 Aligned_cols=282 Identities=14% Similarity=0.137 Sum_probs=233.1
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..+..+|.+++|+|+ +++++++. .++.+.+ +........ ....+|...|.+++|+|++ ++|++
T Consensus 6 ~~~~~~v~~~~~s~d---g~~~~~~~----~~~~~~~--~~~~~~~~~---~~~~~h~~~v~~~~~~~~~-----~~l~~ 68 (337)
T 1gxr_A 6 AMGSKPAYSFHVTAD---GQMQPVPF----PPDALIG--PGIPRHARQ---INTLNHGEVVCAVTISNPT-----RHVYT 68 (337)
T ss_dssp EEEEEECCEEEECSS---SCEEECCC----CTTSSSS--TTCCSEEEE---EEEECCSSCCCEEEECSSS-----SEEEE
T ss_pred cccCCceeEEEECCC---CCEEEeec----CCCcEec--cccCCcccc---ceeccCCCceEEEEEecCC-----cEEEE
Confidence 345678999999999 99999888 5666555 322221111 1235899999999999999 89999
Q ss_pred eCC-cEEEEeecCCc-ceeEEEee--cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe--eeeeeeccCC
Q 040307 94 SGD-SLRLWEIHDDR-TELKSLLN--SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI--LETQLVAHDR 167 (339)
Q Consensus 94 ~~~-~i~iw~~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~ 167 (339)
+++ .|++|++.+++ ......+. .|. ..|.+++|+| ++++|++++.|+.|++||+++++ ....+..|..
T Consensus 69 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 69 GGKGCVKVWDISHPGNKSPVSQLDCLNRD-----NYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp ECBSEEEEEETTSTTCCSCSEEEECSCTT-----SBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred cCCCeEEEEECCCCCceeeeecccccCCC-----CcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC
Confidence 887 99999998764 11223333 455 8999999998 99999999999999999998877 5667778999
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
.+.+++|+ ++++|++++.|+.|++||+++.+....+ . .|...+.+++|+| ++++|++++.++. |++||++. .+
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~--~~~~~i~~~~~~~-~~~~l~~~~~dg~-i~~~d~~~-~~ 216 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-Q--GHTDGASCIDISN-DGTKLWTGGLDNT-VRSWDLRE-GR 216 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-C--CCSSCEEEEEECT-TSSEEEEEETTSE-EEEEETTT-TE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-e--cccCceEEEEECC-CCCEEEEEecCCc-EEEEECCC-Cc
Confidence 99999999 7889999999999999999987644433 2 3678999999998 8899999999998 99999987 44
Q ss_pred ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 326 (339)
.+..+ .+...+.+++|+|++ .+|++++.|+.|++||+.... ......|...|.+++|+|+++.++
T Consensus 217 ~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~l~ 281 (337)
T 1gxr_A 217 QLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD-------------KYQLHLHESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp EEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC-------------EEEECCCSSCEEEEEECTTSSEEE
T ss_pred eEeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC-------------eEEEcCCccceeEEEECCCCCEEE
Confidence 55554 467899999999999 699999999999999999877 456678899999999999999999
Q ss_pred EEecCCeEEEEeC
Q 040307 327 AIAFVNKLQLLKV 339 (339)
Q Consensus 327 ~~~~d~~v~~w~v 339 (339)
+++.|+.|++|++
T Consensus 282 ~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 282 STGKDNLLNAWRT 294 (337)
T ss_dssp EEETTSEEEEEET
T ss_pred EecCCCcEEEEEC
Confidence 9999999999985
No 47
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-40 Score=278.75 Aligned_cols=253 Identities=19% Similarity=0.254 Sum_probs=205.6
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSV 144 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~ 144 (339)
.+|.+.|++++|+|++ ++||+|+ | +|+|||+.+++......+.+|. .+|.+++|+|. ++++|++|+.
T Consensus 10 ~~H~~~V~~v~~s~~g-----~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~-----~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYG-----TRLATCSSDRSVKIFDVRNGGQILIADLRGHE-----GPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ----CCEEEEEECGGG-----CEEEEEETTTEEEEEEEETTEEEEEEEEECCS-----SCEEEEEECCGGGSSCEEEEET
T ss_pred ccccCeEEEeeEcCCC-----CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC-----ccEEEEEeCCCCCCCEEEEEEC
Confidence 5899999999999999 8999987 5 9999999887644677888988 89999999852 4899999999
Q ss_pred CCeEEEEECCCCe--eeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307 145 DTTCVIWDIDREI--LETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 145 d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (339)
|++|++||+++++ ....+.+|...|.+++|+ + +.+|++++.|+.|++||++.............|...+.+++|+
T Consensus 80 D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 80 DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence 9999999998874 556677899999999999 3 6799999999999999998764332222333477889999999
Q ss_pred cCC----------------CCeEEEEeeCCCeEEEEecCCCC--CceEEEecCCCCeeEEEeccCC---CCeEEEEeCCC
Q 040307 220 KAD----------------PRFMATVGMDSNKVVVLDIRFPT--NPVVVLSKHEGSVNGISWAPLY---GRRLCSVADDS 278 (339)
Q Consensus 220 p~~----------------~~~l~~~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg 278 (339)
|.. +++|++++.|+. |++||++... .++..+.+|...|++++|+|++ ..+|++++.|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred cccCCccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 842 478999999999 9999997532 3566788999999999999985 25899999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|+||++...... .........|...|.+++|+|+++.|++++.|+.|++|++
T Consensus 239 ~v~iw~~~~~~~~--------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 239 RVFIWTCDDASSN--------TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EEEEEECSSTTCC--------CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred eEEEEEccCcccc--------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 9999999874200 0112344568889999999999999999999999999973
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-39 Score=278.13 Aligned_cols=275 Identities=15% Similarity=0.210 Sum_probs=224.2
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-c
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-S 97 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~ 97 (339)
+.+++|++. .+++++ .|+.|++|++.... ... .....|...|.+++|+|++ .+|++++ + .
T Consensus 96 ~~~~~~s~~-----~l~~~~----~d~~v~lw~~~~~~--~~~--~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~ 157 (401)
T 4aez_A 96 LNLLDWSNL-----NVVAVA----LERNVYVWNADSGS--VSA--LAETDESTYVASVKWSHDG-----SFLSVGLGNGL 157 (401)
T ss_dssp CBCEEECTT-----SEEEEE----ETTEEEEEETTTCC--EEE--EEECCTTCCEEEEEECTTS-----SEEEEEETTSC
T ss_pred EEEEeecCC-----CEEEEE----CCCeEEEeeCCCCc--EeE--eeecCCCCCEEEEEECCCC-----CEEEEECCCCe
Confidence 444555544 466666 59999998876543 332 3334589999999999999 8888887 4 9
Q ss_pred EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-CCeeeeeeeccCCceeEEEec-
Q 040307 98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-REILETQLVAHDREVYDISWG- 175 (339)
Q Consensus 98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~v~~~~~~- 175 (339)
|++||+.+++ ....+.+|. ..|.+++|+ +++|++++.||.|++||++ .......+.+|...|.+++|+
T Consensus 158 i~iwd~~~~~--~~~~~~~~~-----~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 158 VDIYDVESQT--KLRTMAGHQ-----ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp EEEEETTTCC--EEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEEEECcCCe--EEEEecCCC-----CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence 9999999887 778888887 899999995 4799999999999999998 456677888999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCCCCCceEEEec
Q 040307 176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRFPTNPVVVLSK 253 (339)
Q Consensus 176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~~~ 253 (339)
++++|++++.|+.|++||+++.+....+ . .|...+.+++|+|....++++++ .|+. |++||++. .+++..+.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~--~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~-~~~~~~~~- 301 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTK-T--NHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAAT-GARVNTVD- 301 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEE-C--CCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTT-CCEEEEEE-
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEe-c--CCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCC-CCEEEEEe-
Confidence 7899999999999999999987644332 2 36789999999996667777765 6888 99999987 56666665
Q ss_pred CCCCeeEEEeccCCCCeEEEE--eCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307 254 HEGSVNGISWAPLYGRRLCSV--ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 254 ~~~~v~~~~~~p~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
+...|.+++|+|++ .+|+++ +.||.|++||+.... .........|...|.+++|+|+++.+++++.|
T Consensus 302 ~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~----------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d 370 (401)
T 4aez_A 302 AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSG----------LTKQVDIPAHDTRVLYSALSPDGRILSTAASD 370 (401)
T ss_dssp CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTE----------EEEEEEEECCSSCCCEEEECTTSSEEEEECTT
T ss_pred CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCcc----------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence 56789999999999 588874 489999999999865 11122355789999999999999999999999
Q ss_pred CeEEEEeC
Q 040307 332 NKLQLLKV 339 (339)
Q Consensus 332 ~~v~~w~v 339 (339)
+.|++|++
T Consensus 371 g~i~iw~~ 378 (401)
T 4aez_A 371 ENLKFWRV 378 (401)
T ss_dssp SEEEEEEC
T ss_pred CcEEEEEC
Confidence 99999985
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.3e-39 Score=276.13 Aligned_cols=257 Identities=19% Similarity=0.235 Sum_probs=207.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCc-------------cCCCCEEEEEEcC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTS-------------EFSSAITSFDWAG 133 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~ 133 (339)
..|...|.+++|+|++ ++||++++ .+++|++.+++ ....+..+... .....|++++|+|
T Consensus 61 ~~h~~~V~~v~fspdg-----~~la~g~~~~v~i~~~~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDG-----EYLATGCNKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EECSSCCCEEEECTTS-----SEEEEECBSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECT
T ss_pred cCCCCEEEEEEECCCC-----CEEEEEcCCcEEEEEecCCC--EEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 4799999999999999 89999987 99999999887 55555544210 1113499999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCC
Q 040307 134 FDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCP 212 (339)
Q Consensus 134 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 212 (339)
++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+ ++++|++++.|+.|++||+++++....+. +...
T Consensus 134 -dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~ 208 (393)
T 1erj_A 134 -DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDG 208 (393)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSC
T ss_pred -CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCC
Confidence 99999999999999999999999999999999999999999 78999999999999999999887544432 3467
Q ss_pred eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE-------ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307 213 LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL-------SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 213 v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~ 285 (339)
+.+++|+|.++++|++++.|+. |++||++. +..+..+ .+|...|.+++|+|++ .+|++++.|+.|++||+
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~-v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRA-VRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSC-EEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEcCCCc-EEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEEC
Confidence 9999999888999999999999 99999987 4555555 5789999999999999 69999999999999999
Q ss_pred cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...........+..........+|...|.+++|+|++.++++++.|+.|++|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 875410000000001112245578999999999999999999999999999984
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-40 Score=288.67 Aligned_cols=309 Identities=13% Similarity=0.079 Sum_probs=229.3
Q ss_pred CCceeeee-e-ccCCeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCC-C-cccceeeEeecCCCCceEEEEcC
Q 040307 7 KKPGVHTY-M-AQWPISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPET-S-DFSADNRLIFDHPYTPTNIAFFP 81 (339)
Q Consensus 7 ~~~~~~~~-~-~~~~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-~-~~~~~~~~~~~~~~~v~~l~~~~ 81 (339)
+++.+..+ . |.++|.+++|+| + +++||+|+ .|+.|+||++.... . .... .....|...|.+++|+|
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~---~~~l~s~s----~dg~v~vwd~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~ 121 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGE---TPYLITGS----DQGVIKIWNLKEIIVGEVYSS--SLTYDCSSTVTQITMIP 121 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSS---SCEEEEEE----TTSEEEEEEHHHHHTTCCCSC--SEEEECSSCEEEEEECT
T ss_pred cceEEeeeccCCCCceEEEEECCCC---CCEEEEec----CCceEEEeECcccccCcccce--eeeccCCCCEEEEEEeC
Confidence 45566666 3 579999999999 8 99999999 79999999986511 1 1211 22357999999999999
Q ss_pred CCCCCCCCeEEEeC-C-cEEEEeec---CCcceeEEEeecCC-------CccCCCCEEEEE--EcCCCCCEEEEEeCCCe
Q 040307 82 SEETLNPDIVATSG-D-SLRLWEIH---DDRTELKSLLNSNK-------TSEFSSAITSFD--WAGFDTRRVATCSVDTT 147 (339)
Q Consensus 82 ~~~~~~~~~la~~~-~-~i~iw~~~---~~~~~~~~~~~~~~-------~~~~~~~i~~~~--~~~~~~~~l~~~~~d~~ 147 (339)
++ .+|++++ | .|++||++ .++ ....+..+. ..+....+.++. ++| ++.+|++++.|+.
T Consensus 122 ~~-----~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~ 193 (437)
T 3gre_A 122 NF-----DAFAVSSKDGQIIVLKVNHYQQES--EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSR 193 (437)
T ss_dssp TS-----SEEEEEETTSEEEEEEEEEEEETT--EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSE
T ss_pred CC-----CEEEEEeCCCEEEEEEeccccCCc--eeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCe
Confidence 99 7888887 4 99999995 443 222222211 000125677777 556 8899999999999
Q ss_pred EEEEECCCCeeeeeeec--cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec---C
Q 040307 148 CVIWDIDREILETQLVA--HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK---A 221 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p---~ 221 (339)
|++||+++++.+..+.. |...|++++|+ ++++|++++.|+.|++||++.++....+... +...|.+++|+| .
T Consensus 194 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 194 VIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--DHAPITHVEVCQFYGK 271 (437)
T ss_dssp EEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--TCEEEEEEEECTTTCT
T ss_pred EEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--CCCceEEEEeccccCC
Confidence 99999999999999987 88999999999 7899999999999999999987644443323 557899997776 2
Q ss_pred CCCeEEEEeeCCCeEEEEecCCCCCceEEEec--------------------------CCCCeeEEEeccCCCCeEEEEe
Q 040307 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--------------------------HEGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--------------------------~~~~v~~~~~~p~~~~~l~~~~ 275 (339)
++.+|++++.|+. |++||++. .+.+..+.+ |...|++++|+ ++ .+|++++
T Consensus 272 ~~~~l~s~~~dg~-i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~ 347 (437)
T 3gre_A 272 NSVIVVGGSSKTF-LTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDE 347 (437)
T ss_dssp TEEEEEEESTTEE-EEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEG
T ss_pred CccEEEEEcCCCc-EEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecC
Confidence 6779999999998 99999987 444555543 45568888998 65 6999999
Q ss_pred CCCcEEEEEecCCCCCCCCCC---CCCcc----------------------cceeeecccceeEEEEecCC--CCceEEE
Q 040307 276 DDSRALIWEVVGPGYRSGNGG---PSGDV----------------------EPELCYQSMAEINVVRWSPL--ELDWIAI 328 (339)
Q Consensus 276 ~dg~v~iwd~~~~~~~~~~~~---~~~~~----------------------~~~~~~~~~~~i~~~~~~p~--~~~l~~~ 328 (339)
.|+.|++||+...+....... ..... .......|...|++++|+++ +..|+++
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999987661000000 00000 00011128899999999998 6678899
Q ss_pred ecCCeEEEEe
Q 040307 329 AFVNKLQLLK 338 (339)
Q Consensus 329 ~~d~~v~~w~ 338 (339)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999996
No 51
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.8e-39 Score=264.86 Aligned_cols=252 Identities=16% Similarity=0.230 Sum_probs=205.3
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC--CCCCCCCeEE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS--EETLNPDIVA 92 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~la 92 (339)
.|.++|.+++|+|+ +++||+|+ .|+.|+||++......... .+ .+|.++|.+++|+|+ + .+||
T Consensus 7 ~h~~~V~~~~~s~~---g~~las~s----~D~~v~iw~~~~~~~~~~~--~l-~gH~~~V~~v~~s~~~~g-----~~l~ 71 (297)
T 2pm7_B 7 AHNEMIHDAVMDYY---GKRMATCS----SDKTIKIFEVEGETHKLID--TL-TGHEGPVWRVDWAHPKFG-----TILA 71 (297)
T ss_dssp SCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEEBCSSCBCCCE--EE-CCCSSCEEEEEECCGGGC-----SEEE
T ss_pred CCcCceEEEEECCC---CCEEEEEe----CCCEEEEEecCCCCcEEEE--EE-ccccCCeEEEEecCCCcC-----CEEE
Confidence 57899999999999 99999999 7999999988754333332 33 689999999999864 6 7899
Q ss_pred EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCe--eeeeeeccC
Q 040307 93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREI--LETQLVAHD 166 (339)
Q Consensus 93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~ 166 (339)
+|+ | +|++||+++++......+..|. ..|.+++|+| + +.+|++++.|+.|++||++++. ....+.+|.
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHS-----ASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCS-----SCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCC-----CceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence 887 5 9999999987544666777777 8999999998 5 7899999999999999998763 235567899
Q ss_pred CceeEEEecC--------------CcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCC--CCeEEEE
Q 040307 167 REVYDISWGG--------------FNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKAD--PRFMATV 229 (339)
Q Consensus 167 ~~v~~~~~~~--------------~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~--~~~l~~~ 229 (339)
..|.+++|++ +++|++++.|+.|++||+++..... .......|...|.+++|+|+. +.+|+++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 9999999994 3689999999999999998765322 222233488899999999943 5899999
Q ss_pred eeCCCeEEEEecCCCCCc--eEEE--ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 230 GMDSNKVVVLDIRFPTNP--VVVL--SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 230 ~~d~~~i~i~d~~~~~~~--~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+.|+. |++||++....+ ...+ ..|...|.+++|+|++ .+|++++.|+.|+||+.....
T Consensus 226 s~D~~-v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 226 SQDRT-CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp ETTSC-EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred ECCCc-EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECCCC
Confidence 99999 999999863322 1223 4678899999999999 699999999999999987543
No 52
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-39 Score=275.02 Aligned_cols=249 Identities=19% Similarity=0.336 Sum_probs=198.9
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
...|...|.+++|+|+ +.+|++ + .||.|+||++............ ..+|...|.+++|+|++ ++|+
T Consensus 90 ~~~~~~~V~~~~~s~d---~~~l~~-s----~dg~v~lWd~~~~~~~~~~~~~-~~~h~~~V~~v~~spdg-----~~l~ 155 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSE---KGILVA-S----DSGAVELWEILEKESLLVNKFA-KYEHDDIVKTLSVFSDG-----TQAV 155 (357)
T ss_dssp EEECSSCEEEEEEETT---TEEEEE-E----TTSCEEEC--------CCCCEE-ECCCSSCEEEEEECSSS-----SEEE
T ss_pred cCCCCCCEEEEEEcCC---CCEEEE-E----CCCEEEEeeccccceeEEEeec-cCCCCCCEEEEEECCCC-----CEEE
Confidence 3457789999999999 876654 5 4999999877655433332112 25899999999999999 8888
Q ss_pred EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--eccCCc
Q 040307 93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL--VAHDRE 168 (339)
Q Consensus 93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~ 168 (339)
+++ + .|++||+++++ .+..+.+|. ..|++++|+|....++++++.|+.|++||+++++....+ ..+...
T Consensus 156 sgs~dg~v~iwd~~~~~--~~~~~~~h~-----~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 228 (357)
T 4g56_B 156 SGGKDFSVKVWDLSQKA--VLKSYNAHS-----SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI 228 (357)
T ss_dssp EEETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC
T ss_pred EEeCCCeEEEEECCCCc--EEEEEcCCC-----CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc
Confidence 887 4 99999999887 788888888 899999999844468999999999999999998876655 356678
Q ss_pred eeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 169 VYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 169 v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
+.+++|+ + +.+|++|+.|+.|++||+++++.... +.. +...|.+++|+|+++++|++++.|+. |+|||++. ++
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~--~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-~~ 303 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAV--HSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-SE 303 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECC--CSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-CE
T ss_pred ccchhhhhcccceEEEeecccceeEEECCCCcEeEE-Eec--cceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCC-Cc
Confidence 9999999 3 67899999999999999998875444 333 67899999999966678999999999 99999986 44
Q ss_pred ceEEEecCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCCC
Q 040307 247 PVVVLSKHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+ ...+|...|++++|+| ++ .+|++++.||+|++|++....
T Consensus 304 ~~-~~~~H~~~V~~vafsP~d~-~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 304 VF-RDLSHRDFVTGVAWSPLDH-SKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EE-EECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECC---
T ss_pred Ee-EECCCCCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCC
Confidence 44 4557999999999999 56 699999999999999997765
No 53
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.8e-38 Score=274.53 Aligned_cols=278 Identities=17% Similarity=0.237 Sum_probs=226.8
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D- 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~- 96 (339)
....|+||++ ++||+|. |++|+||+... ++....... ..|...|++|+|+|++ ++||+|+ |
T Consensus 107 y~~~l~wS~~----n~lAvgl-----d~tV~lWd~~t--g~~~~~~~~-~~~~~~V~sv~fspdg-----~~lasgs~Dg 169 (420)
T 4gga_A 107 YLNLVDWSSG----NVLAVAL-----DNSVYLWSASS--GDILQLLQM-EQPGEYISSVAWIKEG-----NYLAVGTSSA 169 (420)
T ss_dssp TCBCEEECTT----SEEEEEE-----TTEEEEEETTT--CCEEEEEEC-CSTTCCEEEEEECTTS-----SEEEEEETTS
T ss_pred cceeEEECCC----CEEEEEe-----CCEEEEEECCC--CCEEEEEEe-cCCCCcEEEEEECCCC-----CEEEEEECCC
Confidence 3567999976 4888888 99999977654 343331122 4688899999999999 8999987 4
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG 175 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~ 175 (339)
.|+|||+++++ .+..+.+|. ..+.++.|+ +.+|++|+.|+.+++||..... .+..+.+|...+..+.|+
T Consensus 170 ~v~iWd~~~~~--~~~~~~~h~-----~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 170 EVQLWDVQQQK--RLRNMTSHS-----ARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp CEEEEETTTTE--EEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred eEEEEEcCCCc--EEEEEeCCC-----CceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999987 788888888 889998885 4799999999999999987654 567788999999999999
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCCCCCceEEE
Q 040307 176 -GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 176 -~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~ 251 (339)
++.++++++.|+.+++||....+... .+.....+...|.+++|+|.+..++++++ .|+. |++||+++ +.++..+
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t-~~~~~~~ 317 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCS-GACLSAV 317 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTT-TEEEEEE
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCc-cccceee
Confidence 79999999999999999998875322 12222347789999999997778877653 6777 99999987 5566666
Q ss_pred ecCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe
Q 040307 252 SKHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 252 ~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
.. ...+.++.|+|++. .+++++ .|+.|+|||+.+.. ....+.+|...|++++|+|+|+.|++++
T Consensus 318 ~~-~~~v~~~~~~~~~~-~lv~~sg~~d~~I~iwd~~~~~------------~v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 318 DA-HSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMA------------KVAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EC-SSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTCC------------EEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred cc-ccceeeeeecCCCC-eEEEEEecCCCEEEEEECCCCc------------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 65 45789999999984 666654 78999999999877 2335568999999999999999999999
Q ss_pred cCCeEEEEeC
Q 040307 330 FVNKLQLLKV 339 (339)
Q Consensus 330 ~d~~v~~w~v 339 (339)
.|++|+||++
T Consensus 384 ~D~tvriWdv 393 (420)
T 4gga_A 384 ADETLRLWRC 393 (420)
T ss_dssp TTTEEEEECC
T ss_pred cCCeEEEEEC
Confidence 9999999986
No 54
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.4e-39 Score=280.73 Aligned_cols=299 Identities=16% Similarity=0.230 Sum_probs=218.5
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC-------CcccceeeEeecCC------------CCce
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET-------SDFSADNRLIFDHP------------YTPT 75 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~------------~~v~ 75 (339)
.+.+.|.+++|+|+ +++||+|+ .||.|+||++.... ..+.....+ .+|. ..|.
T Consensus 26 ~~~~~V~~v~~s~~---g~~la~g~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 26 AEADIISTVEFNHS---GELLATGD----KGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp CGGGSEEEEEECSS---SSEEEEEE----TTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCC
T ss_pred cccCcEEEEEECCC---CCEEEEEc----CCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceE
Confidence 34689999999999 99999999 79999999987544 222222233 5787 8899
Q ss_pred EEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce-------------------------------------eEEE-ee
Q 040307 76 NIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE-------------------------------------LKSL-LN 115 (339)
Q Consensus 76 ~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~-------------------------------------~~~~-~~ 115 (339)
+++|+|++.. .+|++++ | .|++|++.+.+.. +... ..
T Consensus 98 ~l~~~~~~~~---~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 98 KIRWLPQKNA---AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp EEEECCCCSS---SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred EEEEcCCCCc---ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 9999999721 2555555 6 9999999864311 0111 24
Q ss_pred cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-Ceeee-------eeeccCCceeEEEec-CC-cEEEEEeC
Q 040307 116 SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR-EILET-------QLVAHDREVYDISWG-GF-NVFASVSG 185 (339)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~-------~~~~~~~~v~~~~~~-~~-~~l~~~~~ 185 (339)
+|. ..|++++|+| ++++|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+ ++ ++|++++.
T Consensus 175 ~h~-----~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 175 AHT-----YHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp CCS-----SCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred CCC-----cceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 455 8999999998 99999998 799999999984 33443 356899999999999 55 89999999
Q ss_pred CCcEEEEECCCCcce---eeEEeCCCCCC------------CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 186 DCSVRVFDLRDKERS---TIIYENPVQDC------------PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 186 d~~i~i~d~~~~~~~---~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
|+.|++||+++.+.. ...+.. +.. .|.+++|+| ++++|++++. +. |++||++...+++..
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~-v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LS-VKVWDLNMENRPVET 322 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SE-EEEEETTCCSSCSCC
T ss_pred CCeEEEEECcCCccccceeeEecc--CCCccccccccccCceEEEEEECC-CCCEEEEeeC-Ce-EEEEeCCCCccccce
Confidence 999999999988741 222333 333 899999998 9999999888 77 999999876778888
Q ss_pred EecCCCC---------------eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC-----CCCCCCCccc--------
Q 040307 251 LSKHEGS---------------VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS-----GNGGPSGDVE-------- 302 (339)
Q Consensus 251 ~~~~~~~---------------v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~-------- 302 (339)
+..|... +..++|+|++ .+|++++.||.|++||+...+... ....+.....
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG 401 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS
T ss_pred eeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccC
Confidence 8888642 2349999999 599999999999999998765200 0000000000
Q ss_pred -------ceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 303 -------PELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 303 -------~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
......+...|..++|+|++..|++++.+ .+.+|.
T Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~-~~~~~~ 443 (447)
T 3dw8_B 402 KRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN-NLYIFQ 443 (447)
T ss_dssp CCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS-CEEEEE
T ss_pred CcccccccccccccCCceeEEEECCCCCEEEEEecc-eeeeec
Confidence 00122345679999999999855555554 577764
No 55
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.1e-39 Score=270.96 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=202.5
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC--CCCCCCCeEE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS--EETLNPDIVA 92 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~la 92 (339)
.|.++|++++|+|+ +++||+|+ .|++|+||++......... .+ .+|.+.|.+++|+|+ + .+|+
T Consensus 11 ~H~~~V~~v~~s~~---g~~lasgs----~D~~v~lwd~~~~~~~~~~--~l-~gH~~~V~~v~~~~~~~~-----~~l~ 75 (316)
T 3bg1_A 11 SHEDMIHDAQMDYY---GTRLATCS----SDRSVKIFDVRNGGQILIA--DL-RGHEGPVWQVAWAHPMYG-----NILA 75 (316)
T ss_dssp ---CCEEEEEECGG---GCEEEEEE----TTTEEEEEEEETTEEEEEE--EE-ECCSSCEEEEEECCGGGS-----SCEE
T ss_pred cccCeEEEeeEcCC---CCEEEEEe----CCCeEEEEEecCCCcEEEE--EE-cCCCccEEEEEeCCCCCC-----CEEE
Confidence 57899999999999 99999999 7999999887654322221 33 689999999999864 6 7888
Q ss_pred EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCe---eeeeeecc
Q 040307 93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREI---LETQLVAH 165 (339)
Q Consensus 93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~ 165 (339)
+|+ | +|++||+++++......+.+|. ..|++++|+| + +.+|++|+.|+.|++||++.+. ....+.+|
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHD-----SSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCS-----SCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCC-----CceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 887 5 9999999887545667778887 8999999998 5 7899999999999999998763 23456789
Q ss_pred CCceeEEEecC------------------CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC---CC
Q 040307 166 DREVYDISWGG------------------FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD---PR 224 (339)
Q Consensus 166 ~~~v~~~~~~~------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~ 224 (339)
...|.+++|++ +.+|++++.|+.|++||++.............|...|.+++|+|.. +.
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 99999999984 2689999999999999997654222333334588899999999932 37
Q ss_pred eEEEEeeCCCeEEEEecCCCC---CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 225 FMATVGMDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+|++++.|+. |++||++... .....+..|...|.+++|+|++ .+|++++.|+.|+||+.....
T Consensus 230 ~las~s~D~~-v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 230 TIASCSQDGR-VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp EEEEEETTCE-EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECTTS
T ss_pred eEEEEcCCCe-EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECCCC
Confidence 8999999999 9999987521 1234567789999999999999 699999999999999987543
No 56
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-38 Score=266.86 Aligned_cols=243 Identities=16% Similarity=0.310 Sum_probs=204.2
Q ss_pred ecCCCCceEEEE-----cC-CCCCCCCCeEEEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCC
Q 040307 68 FDHPYTPTNIAF-----FP-SEETLNPDIVATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGF 134 (339)
Q Consensus 68 ~~~~~~v~~l~~-----~~-~~~~~~~~~la~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~ 134 (339)
.+|.+.|++++| ++ ++ .+|++|+ | +|++|++...+ ..+...+.+|. ..|.+++|+|
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~-----~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~-----~~V~~~~~~~- 86 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDS-----PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN-----HFVSDLALSQ- 86 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCC-----CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS-----SCEEEEEECS-
T ss_pred ccchhhhhheeeEEEeecCCCC-----CEEEEEcCCCEEEEEECCcCCcccccccccchhccCC-----CceEEEEECC-
Confidence 689999999999 66 67 8999988 5 99999997643 23556778887 8999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL 213 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v 213 (339)
++.++++|+.|++|++||+++++.+..+.+|...|.+++|+ ++++|++++.|+.|++||+.... .........|...+
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWV 165 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCcee
Confidence 99999999999999999999999999999999999999999 78999999999999999998433 22222223477889
Q ss_pred EEEEEecCC---------CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 214 LRLEWNKAD---------PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 214 ~~~~~~p~~---------~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
.+++|+|.. +.+|++++.|+. |++||.+ ......+.+|...|.+++|+|++ ++|++|+.||.|++||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGR-LKVWNTN--FQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWD 241 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSE-EEEEETT--TEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCE-EEEEcCC--CceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEE
Confidence 999999833 278999999998 9999953 45667888999999999999999 6999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 285 VVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+.... .+.....+...|.+++|+|+++ +++++.|+.|++|++
T Consensus 242 ~~~~~------------~~~~~~~~~~~v~~v~~sp~~~-~la~~~d~~v~iw~~ 283 (343)
T 2xzm_R 242 ILNLT------------YPQREFDAGSTINQIAFNPKLQ-WVAVGTDQGVKIFNL 283 (343)
T ss_dssp SSCCS------------SCSEEEECSSCEEEEEECSSSC-EEEEEESSCEEEEES
T ss_pred CCCCc------------ccceeecCCCcEEEEEECCCCC-EEEEECCCCEEEEEe
Confidence 95544 2344445566799999999986 667778999999985
No 57
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.9e-38 Score=266.68 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=210.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc--ccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD--FSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
+...|.+++|+|+ +.+||+|+ .|+.+++|++...... ......+ ..|...|.+++|+|++ ..|++
T Consensus 105 ~~~~v~~~~~sp~---g~~lasg~----~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-----~~l~t 171 (354)
T 2pbi_B 105 PCTWVMACAYAPS---GCAIACGG----LDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSD-----MQILT 171 (354)
T ss_dssp SSSCCCEEEECTT---SSEEEEES----TTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSS-----SEEEE
T ss_pred CCCCEEEEEECCC---CCEEEEee----CCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCC-----CEEEE
Confidence 4578999999999 99999999 7999999988654321 1111123 5799999999999999 77777
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
++ | +|++||+++++ .+..+.+|. ..|.+++|+|. ++++|++|+.||.|++||+++++++..+..|...|+
T Consensus 172 ~s~D~~v~lwd~~~~~--~~~~~~~h~-----~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~ 244 (354)
T 2pbi_B 172 ASGDGTCALWDVESGQ--LLQSFHGHG-----ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN 244 (354)
T ss_dssp EETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EeCCCcEEEEeCCCCe--EEEEEcCCC-----CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence 76 5 99999999987 788888888 89999999873 468999999999999999999999999999999999
Q ss_pred EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
+++|+ ++++|++++.|++|++||++..+.... +....+...+.+++|+| ++.+|++++.|+. |++||+.. +..+.
T Consensus 245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~-i~vwd~~~-~~~~~ 320 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAI-YSKESIIFGASSVDFSL-SGRLLFAGYNDYT-INVWDVLK-GSRVS 320 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-CSEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCCCcccceeEEEEeC-CCCEEEEEECCCc-EEEEECCC-CceEE
Confidence 99999 789999999999999999998764433 33323345789999998 9999999999999 99999987 66788
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 250 VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 250 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
.+.+|...|.+++|+|++ .+|++|+.|+.|+||+
T Consensus 321 ~l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ILFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred EEECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence 899999999999999999 6999999999999996
No 58
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-38 Score=264.06 Aligned_cols=241 Identities=15% Similarity=0.211 Sum_probs=205.5
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.+|.+.|.+++|+|++. .+|++|+ | +|++|++.... ..++..+.+|. ..|.+++|+| ++++|++|
T Consensus 14 ~gH~~~V~~l~~~~~~~----~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~s~-dg~~l~s~ 83 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQP----NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-----HIVQDCTLTA-DGAYALSA 83 (319)
T ss_dssp CCCSSCEEEEEECSSCT----TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-----SCEEEEEECT-TSSEEEEE
T ss_pred ccccceEEEEEccCCCc----cEEEEecCCccEEEecCCCCCccccccceEEeCCc-----ccEEEEEECC-CCCEEEEE
Confidence 68999999999999763 7888887 5 99999997543 23567788888 8999999998 99999999
Q ss_pred eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307 143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
+.|++|++||+++++.+..+.+|...|.+++|+ ++.+|++++.|+.|++||++... . .... .|...+.+++|+|.
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~-~-~~~~--~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-L-ATLL--GHNDWVSQVRVVPN 159 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-E-EEEC--CCSSCEEEEEECCC
T ss_pred eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-E-EEEe--ccCCcEEEEEEccC
Confidence 999999999999999999999999999999999 78999999999999999997543 2 2222 37789999999983
Q ss_pred -----CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC
Q 040307 222 -----DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG 296 (339)
Q Consensus 222 -----~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 296 (339)
++..+++++.|+. |++||++. .+....+.+|...|.+++|+|++ ++|++++.||.|++||+....
T Consensus 160 ~~~~~~~~~l~s~~~d~~-i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~------- 229 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKM-VKAWNLNQ-FQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKK------- 229 (319)
T ss_dssp ------CCEEEEEETTSC-EEEEETTT-TEEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE-------
T ss_pred CCCCCCccEEEEEeCCCE-EEEEECCc-chhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-------
Confidence 3458999999999 99999987 56677888999999999999999 699999999999999999876
Q ss_pred CCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 297 PSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+.....+...|.+++|+|++.. ++++.++.+++|++
T Consensus 230 ------~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~i~v~~~ 265 (319)
T 3frx_A 230 ------AMYTLSAQDEVFSLAFSPNRYW-LAAATATGIKVFSL 265 (319)
T ss_dssp ------EEEEEECCSCEEEEEECSSSSE-EEEEETTEEEEEEE
T ss_pred ------EEEEecCCCcEEEEEEcCCCCE-EEEEcCCCcEEEEe
Confidence 5555556678999999999974 45555667999863
No 59
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-39 Score=278.38 Aligned_cols=244 Identities=16% Similarity=0.248 Sum_probs=210.5
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|++++|+|++ ++|++|+ | +|+|||+.+++ ....+..|. ..|.+++|+| ++++|++|+.|
T Consensus 63 ~gH~~~V~~~~~sp~~-----~~l~s~s~D~~v~iWd~~~~~--~~~~~~~h~-----~~v~~~~~s~-~g~~las~~~d 129 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEK-----NWIVSASQDGRLIVWNALTSQ--KTHAIKLHC-----PWVMECAFAP-NGQSVACGGLD 129 (380)
T ss_dssp CCCSSCEEEEEECTTS-----SCEEEEETTSEEEEEETTTTE--EEEEEECCC-----TTCCCCEECT-TSSEEEECCSS
T ss_pred cccccEEEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCc--cceEEecCC-----CCEEEEEECC-CCCEEEEeeCC
Confidence 6899999999999999 8888887 5 99999999887 778888887 8899999998 99999999999
Q ss_pred CeEEEEECCCCe-------eeeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEe--CCCCCCCeE
Q 040307 146 TTCVIWDIDREI-------LETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYE--NPVQDCPLL 214 (339)
Q Consensus 146 ~~v~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~v~ 214 (339)
+.|++||+.+.. ....+.+|.+.+.++.|++ +..|++++.|++|++||+++++....+.. ...|...+.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999999986532 3456778999999999993 56899999999999999999875544321 134778999
Q ss_pred EEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCC
Q 040307 215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGN 294 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 294 (339)
+++|+|.++++|++|+.|+. |++||++....++..+.+|...|.+++|+|++ .+|++++.||.|++||++.+.
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~-v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~----- 282 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTT-VRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH----- 282 (380)
T ss_dssp EEEECSSSCCEEEEEETTSC-EEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE-----
T ss_pred EEEeecCCCCEEEEEECCCe-EEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc-----
Confidence 99999878999999999999 99999987677889999999999999999999 699999999999999999876
Q ss_pred CCCCCcccceeee--------cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 295 GGPSGDVEPELCY--------QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 295 ~~~~~~~~~~~~~--------~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+.... .+...|++++|+|+++++++++.|+.|++|++
T Consensus 283 --------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 283 --------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp --------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred --------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 22211 12235899999999999999999999999984
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-39 Score=277.42 Aligned_cols=289 Identities=11% Similarity=0.160 Sum_probs=233.5
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|...|.+++|+|+ +++|++|+ .++.|++|+ ....... .+ ..|...|.+++|+|++ .+|++++
T Consensus 107 ~~~~v~~~~~s~~---~~~l~~~~----~dg~i~i~~--~~~~~~~---~~-~~~~~~v~~~~~~~~~-----~~l~~~~ 168 (425)
T 1r5m_A 107 TTNQVTCLAWSHD---GNSIVTGV----ENGELRLWN--KTGALLN---VL-NFHRAPIVSVKWNKDG-----THIISMD 168 (425)
T ss_dssp -CBCEEEEEECTT---SSEEEEEE----TTSCEEEEE--TTSCEEE---EE-CCCCSCEEEEEECTTS-----SEEEEEE
T ss_pred CCCceEEEEEcCC---CCEEEEEe----CCCeEEEEe--CCCCeee---ec-cCCCccEEEEEECCCC-----CEEEEEe
Confidence 3569999999999 99999999 799999987 2222222 23 5799999999999999 7787776
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCC---------------EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSA---------------ITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL 158 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 158 (339)
+ .|++|++.+++ ....+..+. .. +.++.|+| + ..+++++.+|.|++||+++++.
T Consensus 169 ~d~~i~iwd~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 169 VENVTILWNVISGT--VMQHFELKE-----TGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTP 239 (425)
T ss_dssp TTCCEEEEETTTTE--EEEEECCC--------------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSC
T ss_pred cCCeEEEEECCCCc--EEEEeeccc-----cCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCce
Confidence 4 99999998886 666666655 33 88999997 4 5689999999999999999998
Q ss_pred eeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307 159 ETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV 237 (339)
Q Consensus 159 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~ 237 (339)
+..+..|...|.+++|+ ++++|++++.|+.|++||+++.+....+ . .+...+.+++|+| ++ ++++++.++. |+
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~--~~~~~i~~~~~~~-~~-~l~~~~~d~~-i~ 313 (425)
T 1r5m_A 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF-Y--GHSQSIVSASWVG-DD-KVISCSMDGS-VR 313 (425)
T ss_dssp SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEE-C--CCSSCEEEEEEET-TT-EEEEEETTSE-EE
T ss_pred eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEe-c--CCCccEEEEEECC-CC-EEEEEeCCCc-EE
Confidence 88888999999999999 7889999999999999999987754443 2 2678999999998 66 9999999998 99
Q ss_pred EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC--CCCCCCCCCc-----ccce-eeecc
Q 040307 238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY--RSGNGGPSGD-----VEPE-LCYQS 309 (339)
Q Consensus 238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~-----~~~~-~~~~~ 309 (339)
+||++. .+++..+..|...|.+++|+|++ .+|++++.||.|++||+..... .......... ..+. ....|
T Consensus 314 i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (425)
T 1r5m_A 314 LWSLKQ-NTLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS 391 (425)
T ss_dssp EEETTT-TEEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT
T ss_pred EEECCC-CcEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc
Confidence 999987 66788888999999999999999 6999999999999999987541 0000000000 0122 33456
Q ss_pred cc--eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 310 MA--EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 310 ~~--~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.. .|++++|+|++++|++++.|+.|++|++
T Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 392 QDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp TCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 55 9999999999998999999999999986
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.5e-38 Score=296.88 Aligned_cols=283 Identities=16% Similarity=0.198 Sum_probs=243.2
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|..+|.+++|+|+ +.+||+|+ .+|.|+||++... .... .+ ..|...|.+++|+|++ ++|+++
T Consensus 11 ~h~~~v~~i~~sp~---~~~la~~~----~~g~v~iwd~~~~--~~~~--~~-~~~~~~v~~~~~s~~~-----~~l~~~ 73 (814)
T 3mkq_A 11 NRSDRVKGIDFHPT---EPWVLTTL----YSGRVEIWNYETQ--VEVR--SI-QVTETPVRAGKFIARK-----NWIIVG 73 (814)
T ss_dssp EECSCEEEEEECSS---SSEEEEEE----TTSEEEEEETTTT--EEEE--EE-ECCSSCEEEEEEEGGG-----TEEEEE
T ss_pred cCCCceEEEEECCC---CCEEEEEe----CCCEEEEEECCCC--ceEE--EE-ecCCCcEEEEEEeCCC-----CEEEEE
Confidence 47899999999999 99999999 7999999887543 3322 33 5799999999999999 888888
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccCCceeE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHDREVYD 171 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~v~~ 171 (339)
+ + .|++|++.+++ ....+.+|. ..|++++|+| ++.+|++++.||.|++||++++ .....+.+|...|.+
T Consensus 74 ~~dg~i~vw~~~~~~--~~~~~~~~~-----~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 74 SDDFRIRVFNYNTGE--KVVDFEAHP-----DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp ETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred eCCCeEEEEECCCCc--EEEEEecCC-----CCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 7 4 99999999887 778888888 8999999998 9999999999999999999887 667788889999999
Q ss_pred EEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC-CCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 172 ISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA-DPRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 172 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
++|++ ++.|++++.|+.|++||+++.......... +...+..++|+|. ++.+|++++.++. |++||++. ..++
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~-~~~~ 221 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQT-KSCV 221 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTT-TEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCC-CcEE
Confidence 99994 679999999999999999887755554443 4478999999973 6789999999998 99999987 6678
Q ss_pred EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCce-EE
Q 040307 249 VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDW-IA 327 (339)
Q Consensus 249 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l-~~ 327 (339)
..+.+|...|.+++|+|++ .+|++++.||.|++||+.... .......+...|.+++|+|++..+ ++
T Consensus 222 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 222 ATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK------------VEKTLNVGLERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp EEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCS------------EEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred EEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc------------EEEEeecCCCcEEEEEEccCCCceEEE
Confidence 8899999999999999999 599999999999999998876 223455677899999999998764 77
Q ss_pred EecCCeEEEEeC
Q 040307 328 IAFVNKLQLLKV 339 (339)
Q Consensus 328 ~~~d~~v~~w~v 339 (339)
++.++.+.+|++
T Consensus 289 ~~~~~~~~~~~~ 300 (814)
T 3mkq_A 289 SGFDNGFTVLSL 300 (814)
T ss_dssp EEETTEEEEEEC
T ss_pred EEeCCCEEEEEc
Confidence 888888888864
No 62
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.3e-38 Score=266.53 Aligned_cols=276 Identities=12% Similarity=0.075 Sum_probs=230.5
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVAT 93 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~ 93 (339)
.|.+.|.+++|+|+ +++|++|+ .|+.|+||+++........ .....|...|.+++|+|++ . +|++
T Consensus 9 ~h~~~v~~~~~s~~---~~~l~~~~----~d~~v~iw~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~-----~~~l~~ 74 (342)
T 1yfq_A 9 APKDYISDIKIIPS---KSLLLITS----WDGSLTVYKFDIQAKNVDL--LQSLRYKHPLLCCNFIDNT-----DLQIYV 74 (342)
T ss_dssp CCSSCEEEEEEEGG---GTEEEEEE----TTSEEEEEEEETTTTEEEE--EEEEECSSCEEEEEEEESS-----SEEEEE
T ss_pred CCCCcEEEEEEcCC---CCEEEEEc----CCCeEEEEEeCCCCccccc--eeeeecCCceEEEEECCCC-----CcEEEE
Confidence 57889999999999 99999999 7999999998765532222 2235899999999999999 8 8888
Q ss_pred eC-C-cEEEEee-cCCcceeEEEeec--CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC---------Ceee
Q 040307 94 SG-D-SLRLWEI-HDDRTELKSLLNS--NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR---------EILE 159 (339)
Q Consensus 94 ~~-~-~i~iw~~-~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~---------~~~~ 159 (339)
++ + .|++|++ .+++ ...+.. |. ..|.+++|+| +++|++++.|+.|++||+++ ++++
T Consensus 75 ~~~dg~i~~wd~~~~~~---~~~~~~~~~~-----~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSPS---FQALTNNEAN-----LGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EETTSCEEEECSSSSSS---EEECBSCCCC-----SCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EcCCCeEEEEEeccCCc---eEeccccCCC-----CceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee
Confidence 87 4 9999999 7775 356666 76 8999999997 88999999999999999987 7777
Q ss_pred eeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCC-CcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307 160 TQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRD-KERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV 238 (339)
Q Consensus 160 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i 238 (339)
..+. |...|.+++|++.. +++++.|+.|++||++. .......... .+...+.+++|+|.+++++++++.++. |++
T Consensus 145 ~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i 220 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSIDGR-VAV 220 (342)
T ss_dssp SSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTSE-EEE
T ss_pred eEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecCCc-EEE
Confidence 7776 88999999999444 99999999999999998 5533322222 366789999999636789999999998 999
Q ss_pred EecCCC-----CCceEEEecCCC---------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 239 LDIRFP-----TNPVVVLSKHEG---------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 239 ~d~~~~-----~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
|+++.. .++...+..|.. .|.+++|+|++ .+|++++.||.|++||+...+ ...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~------------~~~ 287 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK------------KIK 287 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE------------EEE
T ss_pred EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHh------------Hhh
Confidence 999875 377888888865 99999999999 599999999999999998877 222
Q ss_pred eeecc-cceeEEEEecCCCCceEEEecCCe
Q 040307 305 LCYQS-MAEINVVRWSPLELDWIAIAFVNK 333 (339)
Q Consensus 305 ~~~~~-~~~i~~~~~~p~~~~l~~~~~d~~ 333 (339)
....| ...|.+++ |+++.|++++.|+.
T Consensus 288 ~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 288 NFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 44566 89999999 99998999999998
No 63
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=257.40 Aligned_cols=277 Identities=17% Similarity=0.229 Sum_probs=221.6
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-c
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-S 97 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~ 97 (339)
..+|+||++ + +||+|. |++|+||+... ++....... ..|...|++++|+|++ ++||+|+ | .
T Consensus 28 ~~~l~WS~~---~-~lAvg~-----D~tV~iWd~~t--g~~~~~~~~-~~~~~~V~~v~~~~~~-----~~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWSSG---N-VLAVAL-----DNSVYLWSASS--GDILQLLQM-EQPGEYISSVAWIKEG-----NYLAVGTSSAE 90 (318)
T ss_dssp CBCEEECTT---S-EEEEEE-----TTEEEEEETTT--CCEEEEEEC-CSTTCCEEEEEECTTS-----SEEEEEETTSE
T ss_pred ceEEEECCC---C-EEEEEe-----CCEEEEEECCC--CCEEEEEEe-cCCCCeEEEEEECCCC-----CEEEEEECCCc
Confidence 567999988 6 788877 99999987654 333331122 4688899999999999 8999987 4 9
Q ss_pred EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEec-
Q 040307 98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISWG- 175 (339)
Q Consensus 98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~- 175 (339)
|++|++++++ .+..+.+|. ..+.++.+ ++..+++++.++.+++|+..... .+..+.+|...+..+.++
T Consensus 91 v~iw~~~~~~--~~~~~~~h~-----~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 91 VQLWDVQQQK--RLRNMTSHS-----ARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp EEEEETTTTE--EEEEEECCS-----SCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEEeecCCce--eEEEecCcc-----ceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999987 788888887 77777665 45899999999999999987664 556778899999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEE--EEeeCCCeEEEEecCCCCCceEEEe
Q 040307 176 GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMA--TVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 176 ~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~--~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
++++|++++.|+.|++||+++++... .......+...+..++++|.+...+. +++.++. |++||.+. .. .....
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~-~~-~~~~~ 237 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCS-GA-CLSAV 237 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTT-CC-EEEEE
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEeccc-cc-ccccc
Confidence 79999999999999999999865322 12222346678999999996666654 3455666 99999986 33 33445
Q ss_pred cCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
.+...+..+.|+|++. .+++++ .|+.|+|||+.+.+ ....+.+|.+.|++++|+|++++|++++.
T Consensus 238 ~~~~~v~~~~~~~~~~-~~~~~sg~~d~~i~iwd~~~~~------------~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 238 DAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMA------------KVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp ECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTCC------------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred cceeeeeeeeeccccc-ceEEEEEcCCCEEEEEECCCCc------------EEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 5678899999999985 665544 79999999999877 23355679999999999999999999999
Q ss_pred CCeEEEEeC
Q 040307 331 VNKLQLLKV 339 (339)
Q Consensus 331 d~~v~~w~v 339 (339)
|++|+||++
T Consensus 305 D~~v~iWd~ 313 (318)
T 4ggc_A 305 DETLRLWRC 313 (318)
T ss_dssp TTEEEEECC
T ss_pred CCeEEEEEC
Confidence 999999986
No 64
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=262.00 Aligned_cols=250 Identities=22% Similarity=0.280 Sum_probs=196.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEe-ec-CCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLL-NS-NKTSEFSSAITSFDWAGFDTRRVATCS 143 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~ 143 (339)
.+|.+.|.+++|+| .+||+|+ | .|++|++..+.......+ .+ |. ..|.+++|+| ++++|++|+
T Consensus 11 ~~h~~~v~~~~~s~-------~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~-----~~v~~v~~sp-~~~~las~s 77 (330)
T 2hes_X 11 KLYKEKIWSFDFSQ-------GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK-----KAIRSVAWRP-HTSLLAAGS 77 (330)
T ss_dssp ECCSSCEEEEEEET-------TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCC-----SCEEEEEECT-TSSEEEEEE
T ss_pred ccCCCceeeeccCC-------CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc-----CCEEEEEECC-CCCEEEEEe
Confidence 68999999999987 4677776 5 999999987654455555 33 66 8999999998 899999999
Q ss_pred CCCeEEEEECCC-------CeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc-ceeeEEeCCCCCCCeE
Q 040307 144 VDTTCVIWDIDR-------EILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE-RSTIIYENPVQDCPLL 214 (339)
Q Consensus 144 ~d~~v~i~d~~~-------~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~ 214 (339)
.|++|++||++. .+.+..+.+|...|.+++|+ ++++|++++.|+.|++||++... ....+.....|...|.
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 999999999853 34567788999999999999 78999999999999999996432 2222222234788999
Q ss_pred EEEEecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccC--CCCeEEEEeCCCcEEEEEecCCCCC
Q 040307 215 RLEWNKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPL--YGRRLCSVADDSRALIWEVVGPGYR 291 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~iwd~~~~~~~ 291 (339)
+++|+| ++.+|++++.|+. |++||.+... +++..+.+|...|.+++|+|+ + .+|++++.|++|++||+......
T Consensus 158 ~v~~~p-~~~~l~s~s~D~~-i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 158 HVIWHP-SEALLASSSYDDT-VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDED 234 (330)
T ss_dssp EEEECS-SSSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTT
T ss_pred EEEECC-CCCEEEEEcCCCe-EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCcc
Confidence 999999 8999999999999 9999987532 567889999999999999998 5 58999999999999999875300
Q ss_pred CCCCCCCCcccce-eee-cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 292 SGNGGPSGDVEPE-LCY-QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 292 ~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.. ...... ... .|...|.+++|++++ .+++++.|+.|++|++
T Consensus 235 ~~-----~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 235 DQ-----QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEE 278 (330)
T ss_dssp SC-----EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred cc-----ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence 00 000111 222 388899999999876 6889999999999973
No 65
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2e-38 Score=273.96 Aligned_cols=287 Identities=14% Similarity=0.194 Sum_probs=226.4
Q ss_pred CCeeEEEeeecCCcccEEE-EeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC-CCCCCCCCeEEEeC
Q 040307 18 WPISTVAWSVRHDRKSRLA-VGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP-SEETLNPDIVATSG 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la-~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~~~la~~~ 95 (339)
.....++++|+ ...++ +|+ .+|.|+||+++..+........+ .+|...|.+++|+| ++ .+|++|+
T Consensus 35 ~~~~~~~~~~~---~~~~~~~~~----~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~-----~~l~s~s 101 (402)
T 2aq5_A 35 WDSGFCAVNPK---FMALICEAS----GGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHND-----NVIASGS 101 (402)
T ss_dssp CSSCSEEECSS---EEEEEBCCS----SSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCT-----TEEEEEE
T ss_pred cCCCcEEECCC---eEEEEEEEc----CCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCC-----CEEEEEe
Confidence 44556888988 55444 456 69999999886543322221122 58999999999999 77 8999887
Q ss_pred -C-cEEEEeecCCcc-----eeEEEeecCCCccCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCeeeeee--ecc
Q 040307 96 -D-SLRLWEIHDDRT-----ELKSLLNSNKTSEFSSAITSFDWAGFDT-RRVATCSVDTTCVIWDIDREILETQL--VAH 165 (339)
Q Consensus 96 -~-~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~ 165 (339)
| .|++|++.++.. .+...+.+|. ..|.+++|+| ++ ++|++++.|+.|++||+++++.+..+ ..|
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHT-----KRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCS-----SCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCC-----CeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 4 999999988742 3677788888 8999999998 65 79999999999999999999998888 789
Q ss_pred CCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC-CeEEEEEecCCCCeEEEE---eeCCCeEEEEe
Q 040307 166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDC-PLLRLEWNKADPRFMATV---GMDSNKVVVLD 240 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~---~~d~~~i~i~d 240 (339)
...|.+++|+ ++++|++++.|+.|++||+++++....+... |.. .+.+++|+| ++.+|++| +.++. |++||
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~-i~iwd 251 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP--HEGTRPVHAVFVS-EGKILTTGFSRMSERQ-VALWD 251 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS--SCSSSCCEEEECS-TTEEEEEEECTTCCEE-EEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC--CCCCcceEEEEcC-CCcEEEEeccCCCCce-EEEEc
Confidence 9999999999 7899999999999999999998755544233 333 489999998 88999998 67887 99999
Q ss_pred cCCCCCceEEEe-cCCCCeeEEEeccCCCCeEE-EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEe
Q 040307 241 IRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLC-SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRW 318 (339)
Q Consensus 241 ~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 318 (339)
++....++.... .|...+.+++|+|++. +|+ +++.||.|++||+..... ....+....|...|.+++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~g~~dg~i~i~d~~~~~~---------~~~~l~~~~~~~~v~~~~~ 321 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLLPFFDPDTN-IVYLCGKGDSSIRYFEITSEAP---------FLHYLSMFSSKESQRGMGY 321 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEEEEEETTTT-EEEEEETTCSCEEEEEECSSTT---------CEEEEEEECCSSCCSEEEE
T ss_pred CccccCCceEEeccCCCceeEEEEcCCCC-EEEEEEcCCCeEEEEEecCCCc---------ceEeecccccCCcccceEE
Confidence 998665555444 5678899999999995 665 566899999999998760 0112233346689999999
Q ss_pred cCCCCceEEEecCCeEEEEeC
Q 040307 319 SPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 319 ~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|++..++ +.++.+++|++
T Consensus 322 sp~~~~~~--s~~~~~~~~~l 340 (402)
T 2aq5_A 322 MPKRGLEV--NKCEIARFYKL 340 (402)
T ss_dssp CCGGGSCG--GGTEEEEEEEE
T ss_pred ecccccce--ecceeEEEEEc
Confidence 99987554 46679999974
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-37 Score=303.19 Aligned_cols=298 Identities=14% Similarity=0.179 Sum_probs=244.4
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..|.+.|++++|+|+ +++||+|+ .||.|+||++.... ... .+ .+|...|.+++|+|++ ++||+
T Consensus 612 ~~h~~~v~~~~~s~~---~~~l~s~~----~d~~i~vw~~~~~~--~~~--~~-~~h~~~v~~~~~s~~~-----~~l~s 674 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQD---GQRIASCG----ADKTLQVFKAETGE--KLL--DI-KAHEDEVLCCAFSSDD-----SYIAT 674 (1249)
T ss_dssp CCCSSCEEEEEECTT---SSEEEEEE----TTSCEEEEETTTCC--EEE--EE-CCCSSCEEEEEECTTS-----SEEEE
T ss_pred ecccccEEEEEECCC---CCEEEEEe----CCCeEEEEECCCCC--EEE--Ee-ccCCCCEEEEEEecCC-----CEEEE
Confidence 357899999999999 99999999 79999998876543 222 23 5899999999999999 88888
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
++ | .|++||+.+++ .+..+.+|. ..|.+++|+|. +..++++|+.|+.|++||+++++....+.+|...|+
T Consensus 675 ~~~d~~v~vwd~~~~~--~~~~~~~~~-----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 675 CSADKKVKIWDSATGK--LVHTYDEHS-----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp EETTSEEEEEETTTCC--EEEEEECCS-----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred EeCCCeEEEEECCCCc--eEEEEcCCC-----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 87 4 99999999987 888888888 89999999973 345899999999999999999999999999999999
Q ss_pred EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEE---------------------------------------------
Q 040307 171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY--------------------------------------------- 204 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------------------------------- 204 (339)
+++|+ ++++|++++.||.|++||+++......+.
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 99999 78999999999999999998764322111
Q ss_pred -------eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 205 -------ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 205 -------~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
....|...+.+++|+| ++.++++++.++. |++||+.. ...+..+.+|...|.+++|+|++ .+|++++.|
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~-v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~d 903 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYC-VELWNIDS-RLKVADCRGHLSWVHGVMFSPDG-SSFLTASDD 903 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSC-EEEEETTT-TEEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred CCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCe-EEEEEcCC-CceeeecCCCccceEEEEECCCC-CEEEEEeCC
Confidence 0013567889999998 8999999999999 99999987 66788899999999999999999 699999999
Q ss_pred CcEEEEEecCCCCC-----------------------------------------------------CC--------CCC
Q 040307 278 SRALIWEVVGPGYR-----------------------------------------------------SG--------NGG 296 (339)
Q Consensus 278 g~v~iwd~~~~~~~-----------------------------------------------------~~--------~~~ 296 (339)
|.|++|++...... |. ..+
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 99999997532100 00 000
Q ss_pred CC-----Ccccc-eeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 297 PS-----GDVEP-ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 297 ~~-----~~~~~-~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.. ..... .....|...|++++|+|+++.+++++.|+.|++|++
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 00 00011 123368889999999999999999999999999985
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=263.16 Aligned_cols=290 Identities=14% Similarity=0.192 Sum_probs=225.5
Q ss_pred eccCCeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE--------eecCCCCceEEEEcCCCCC
Q 040307 15 MAQWPISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL--------IFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 15 ~~~~~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~ 85 (339)
.|..+|.+++|+| + +++||+|+ .||.|++|+++............ ...|...|.+++|+|++.
T Consensus 41 ~h~~~v~~~~~s~~~---~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 112 (408)
T 4a11_B 41 IHGGGINTLDIEPVE---GRYMLSGG----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT- 112 (408)
T ss_dssp CCSSCEEEEEECTTT---CCEEEEEE----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT-
T ss_pred ccCCcEEEEEEecCC---CCEEEEEc----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC-
Confidence 4889999999999 8 99999999 79999998887654433321000 014899999999999442
Q ss_pred CCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 86 LNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF--DTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 86 ~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
.+|++++ + .|++||+.+++ ....+. +. ..+.++.|+|. ++.++++++.|+.|++||+++++.+..
T Consensus 113 ---~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 113 ---GMFTSSSFDKTLKVWDTNTLQ--TADVFN-FE-----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp ---TCEEEEETTSEEEEEETTTTE--EEEEEE-CS-----SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred ---cEEEEEeCCCeEEEeeCCCCc--cceecc-CC-----CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 7888877 5 99999999886 555554 33 68999999973 334999999999999999999999999
Q ss_pred eeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEe-------------CCCCCCCeEEEEEecCCCCeE
Q 040307 162 LVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYE-------------NPVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 162 ~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~~~~~~v~~~~~~p~~~~~l 226 (339)
+..|...|.+++|+ ++. +|++++.|+.|++||++.......... ...|...|.+++|+| ++++|
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 260 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHL 260 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEE
Confidence 99999999999999 555 699999999999999988763333221 124678999999998 89999
Q ss_pred EEEeeCCCeEEEEecCCCCCceEEEecC-----CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 227 ATVGMDSNKVVVLDIRFPTNPVVVLSKH-----EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
++++.|+. |++||++... .......+ ...+........+ ..+++++.|+.|++||+....
T Consensus 261 ~~~~~dg~-i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~d~~~~~------------ 325 (408)
T 4a11_B 261 LTVGTDNR-MRLWNSSNGE-NTLVNYGKVCNNSKKGLKFTVSCGCS-SEFVFVPYGSTIAVYTVYSGE------------ 325 (408)
T ss_dssp EEEETTSC-EEEEETTTCC-BCCCCCCCCCCCCSSCCCCEECCSSS-SCEEEEEETTEEEEEETTTCC------------
T ss_pred EEecCCCe-EEEEECCCCc-cceeccccccccccccceeEEecCCC-ceEEEEecCCEEEEEECcCCc------------
Confidence 99999999 9999998743 33222211 1122222222233 467777889999999999877
Q ss_pred cceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 302 EPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 302 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
......+|...|++++|+|+++.|++++.||.|++|++
T Consensus 326 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 326 QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 23345579999999999999999999999999999984
No 68
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=262.27 Aligned_cols=290 Identities=15% Similarity=0.184 Sum_probs=229.0
Q ss_pred Cceeeee-eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307 8 KPGVHTY-MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 8 ~~~~~~~-~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
.+.+..+ .|...|.+++|+|+..++++|++|+ .||.|+||++......... .+ ..|...|.+++|+|++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~----~dg~i~iw~~~~~~~~~~~--~~-~~h~~~v~~~~~~~~~--- 98 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGS----WANDVRCWEVQDSGQTIPK--AQ-QMHTGPVLDVCWSDDG--- 98 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEE----TTSEEEEEEECTTSCEEEE--EE-EECSSCEEEEEECTTS---
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEEC----CCCcEEEEEcCCCCceeEE--Ee-ccccCCEEEEEECcCC---
Confidence 3344444 4789999999999921148999999 7999999998764444322 23 6799999999999999
Q ss_pred CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDW--AGFDTRRVATCSVDTTCVIWDIDREILETQL 162 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 162 (339)
++|++++ | .|++||+++++ ... +..|. ..|++++| +| ++++|++++.||.|++||+++++.+..+
T Consensus 99 --~~l~s~~~dg~v~iwd~~~~~--~~~-~~~~~-----~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 99 --SKVFTASCDKTAKMWDLSSNQ--AIQ-IAQHD-----APVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp --SEEEEEETTSEEEEEETTTTE--EEE-EEECS-----SCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred --CEEEEEcCCCcEEEEEcCCCC--cee-ecccc-----CceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 8888887 5 99999999886 333 45566 89999999 77 8899999999999999999999988888
Q ss_pred eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe----EEEEeeCCCeEEE
Q 040307 163 VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF----MATVGMDSNKVVV 238 (339)
Q Consensus 163 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~----l~~~~~d~~~i~i 238 (339)
..+. .+.++.+. ...+++++.++.+++||++........... ........+++.+ +... +++++.++. |++
T Consensus 168 ~~~~-~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~-i~i 242 (368)
T 3mmy_A 168 QLPE-RCYCADVI-YPMAVVATAERGLIVYQLENQPSEFRRIES-PLKHQHRCVAIFK-DKQNKPTGFALGSIEGR-VAI 242 (368)
T ss_dssp ECSS-CEEEEEEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCC-SCSSCEEEEEEEE-CTTSCEEEEEEEETTSE-EEE
T ss_pred ecCC-CceEEEec-CCeeEEEeCCCcEEEEEeccccchhhhccc-cccCCCceEEEcc-cCCCCCCeEEEecCCCc-EEE
Confidence 7554 66777776 457888889999999999987644333322 2345666777665 4443 999999998 999
Q ss_pred EecCCCC--CceEEEecCCC------------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce
Q 040307 239 LDIRFPT--NPVVVLSKHEG------------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE 304 (339)
Q Consensus 239 ~d~~~~~--~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 304 (339)
||++... ..+..+..|.. .|.+++|+|++ .+|++++.||.|++||+.... ...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~------------~~~ 309 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART------------KLK 309 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE------------EEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc------------EEE
Confidence 9998743 45667777776 79999999999 699999999999999999876 223
Q ss_pred eeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 305 LCYQSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 305 ~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
....|...|.+++|+|++++|++++.|+..+.
T Consensus 310 ~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 310 TSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp ECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred EecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 45578999999999999999999988775443
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-36 Score=265.82 Aligned_cols=274 Identities=15% Similarity=0.220 Sum_probs=225.4
Q ss_pred eccCCe-eEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 15 MAQWPI-STVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 15 ~~~~~v-~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.|..++ .++.+ + +++|++|+ .||.|++|++... +... .+ .+|.+.|.+++|+|++ +|++
T Consensus 119 ~h~~~v~~~~~~--~---~~~l~sgs----~dg~i~vwd~~~~--~~~~--~~-~~h~~~V~~l~~~~~~------~l~s 178 (464)
T 3v7d_B 119 GHMTSVITCLQF--E---DNYVITGA----DDKMIRVYDSINK--KFLL--QL-SGHDGGVWALKYAHGG------ILVS 178 (464)
T ss_dssp CCSSSCEEEEEE--E---TTEEEEEE----TTSCEEEEETTTT--EEEE--EE-CCCSSCEEEEEECSTT------EEEE
T ss_pred CCCCCcEEEEEE--C---CCEEEEEc----CCCcEEEEECCCC--cEEE--EE-eCCCcCEEEEEEcCCC------EEEE
Confidence 355664 55554 5 66999999 7999999876543 3332 33 5899999999999886 5555
Q ss_pred eC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcC-CCCCEEEEEeCCCeEEEEECCCCee------------
Q 040307 94 SG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAG-FDTRRVATCSVDTTCVIWDIDREIL------------ 158 (339)
Q Consensus 94 ~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~------------ 158 (339)
|+ | +|++||+++++ ....+.+|. ..|.+++|++ .++.+|++++.|+.|++||++++..
T Consensus 179 ~s~dg~i~vwd~~~~~--~~~~~~~h~-----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGC--CTHVFEGHN-----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp EETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred EeCCCCEEEEECCCCc--EEEEECCCC-----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 55 6 99999999887 788888888 8999999984 2678999999999999999987652
Q ss_pred -----------eeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 159 -----------ETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 159 -----------~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
...+.+|...+.++... ++++++++.|+.|++||+++.+....+ . .|...+.+++|+| ++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~-~--~~~~~v~~~~~~~-~~~~l~ 326 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYIL-S--GHTDRIYSTIYDH-ERKRCI 326 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEE-C--CCSSCEEEEEEET-TTTEEE
T ss_pred EeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEe-c--CCCCCEEEEEEcC-CCCEEE
Confidence 44567788888888554 889999999999999999987744433 2 3678999999998 899999
Q ss_pred EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY 307 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 307 (339)
+++.|+. |++||+++ ++++..+.+|...|.+++|++ .+|++++.||.|++||+.... .....
T Consensus 327 sg~~dg~-i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~-------------~~~~~ 388 (464)
T 3v7d_B 327 SASMDTT-IRIWDLEN-GELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS-------------RKFSY 388 (464)
T ss_dssp EEETTSC-EEEEETTT-TEEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCC-------------EEEEE
T ss_pred EEeCCCc-EEEEECCC-CcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCc-------------eeeee
Confidence 9999999 99999987 678889999999999999983 589999999999999999876 44455
Q ss_pred cccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 308 QSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 308 ~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+...+..++|+|++..+++++ |+.|++|++
T Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 389 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp ECTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred cCCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 6777888999999998666666 999999985
No 70
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-37 Score=261.90 Aligned_cols=251 Identities=19% Similarity=0.247 Sum_probs=211.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEe
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCS 143 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~ 143 (339)
.+|...|.+++|+|++ ++||+++ + .|+||++..........+.+|. .+|++++|+| + +++|++++
T Consensus 8 ~~h~~~v~~~~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~~~l~s~~ 76 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYG-----KRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAH-PKFGTILASCS 76 (379)
T ss_dssp EECCCCEEEEEECSSS-----SEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECC-GGGCSEEEEEE
T ss_pred cCCcccEEEEEEcCCC-----CEEEEEECCCcEEEEecCCCcceeeeEecCCC-----CcEEEEEeCC-CCCCCEEEEec
Confidence 6899999999999999 8888887 5 9999999866555778888888 8999999986 5 89999999
Q ss_pred CCCeEEEEECCCCe--eeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307 144 VDTTCVIWDIDREI--LETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 144 ~d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (339)
.||.|++||+++++ .+..+..|...|.+++|+ + +.+|++++.|+.|++||++.......... ..|...+.+++|
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~~~ 155 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASW 155 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-ECCTTCEEEEEE
T ss_pred cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-cCCCCceEEEEE
Confidence 99999999999887 677778899999999999 5 78999999999999999998753332221 236789999999
Q ss_pred ecC------------CCCeEEEEeeCCCeEEEEecCCCCC---ceEEEecCCCCeeEEEeccC---CCCeEEEEeCCCcE
Q 040307 219 NKA------------DPRFMATVGMDSNKVVVLDIRFPTN---PVVVLSKHEGSVNGISWAPL---YGRRLCSVADDSRA 280 (339)
Q Consensus 219 ~p~------------~~~~l~~~~~d~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~v 280 (339)
+|. ++.+|++++.|+. |++||++.... +...+.+|...|.+++|+|+ + .+|++++.||.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i 233 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTC 233 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEE
Confidence 985 5899999999999 99999987442 34567789999999999999 6 699999999999
Q ss_pred EEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 281 LIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
++||+..... +. .........|...|++++|+|++++|++++.|+.|++|++
T Consensus 234 ~iwd~~~~~~-~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 234 IIWTQDNEQG-PW------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp EEEEESSTTS-CC------EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred EEEeCCCCCc-cc------eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 9999998650 00 0001122347889999999999999999999999999984
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.9e-37 Score=255.00 Aligned_cols=240 Identities=18% Similarity=0.268 Sum_probs=202.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|...|++++|+|++ ++|++++ | .|++|++.+++ ....+.+|. ..|.+++|+| ++++|++++.|
T Consensus 20 ~gh~~~v~~~~~s~~~-----~~l~s~~~dg~i~iw~~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~~~d 86 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNG-----EWLASSSADKLIKIWGAYDGK--FEKTISGHK-----LGISDVAWSS-DSNLLVSASDD 86 (312)
T ss_dssp CCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTCC--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETT
T ss_pred cccCCcEEEEEECCCC-----CEEEEeeCCCeEEEEeCCCcc--cchhhccCC-----CceEEEEEcC-CCCEEEEECCC
Confidence 5899999999999999 8888887 5 99999998887 677788887 8999999998 99999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
+.|++||+++++.+..+.+|...|.+++|+ ++++|++++.|+.|++||+++++....+ . .|..++.+++|+| +++
T Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~~~-~~~ 162 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-P--AHSDPVSAVHFNR-DGS 162 (312)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-C--CCSSCEEEEEECT-TSS
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-c--CCCCcEEEEEEcC-CCC
Confidence 999999999999999999999999999999 7899999999999999999988744332 2 3678999999998 899
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP 303 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 303 (339)
+|++++.|+. |++||++. .+.+..+ ..+...+..++|+|++ .+|++++.|+.|++||+.... ..
T Consensus 163 ~l~~~~~d~~-i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~------------~~ 227 (312)
T 4ery_A 163 LIVSSSYDGL-CRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK------------CL 227 (312)
T ss_dssp EEEEEETTSC-EEEEETTT-CCEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE------------EE
T ss_pred EEEEEeCCCc-EEEEECCC-CceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc------------EE
Confidence 9999999999 99999987 4455554 4456789999999999 699999999999999998876 12
Q ss_pred eeeeccccee--EEEEec-CCCCceEEEecCCeEEEEeC
Q 040307 304 ELCYQSMAEI--NVVRWS-PLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 304 ~~~~~~~~~i--~~~~~~-p~~~~l~~~~~d~~v~~w~v 339 (339)
.....|...+ ....++ +++..+++++.|+.|++|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence 2333454332 223344 56777888899999999985
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-36 Score=254.66 Aligned_cols=265 Identities=17% Similarity=0.225 Sum_probs=213.6
Q ss_pred CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---ceeEEEeecCCC
Q 040307 45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---TELKSLLNSNKT 119 (339)
Q Consensus 45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---~~~~~~~~~~~~ 119 (339)
.|...+|-............++ .+|.+.|++|+|+|++. ++||+|+ | +|+|||+...+ ..+...+.+|.
T Consensus 13 ~g~~~~~~~~~~~~~~~l~~tL-~GH~~~V~~v~~sp~~~----~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~- 86 (340)
T 4aow_A 13 LGTENLYFQSMMTEQMTLRGTL-KGHNGWVTQIATTPQFP----DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS- 86 (340)
T ss_dssp -------------CEEEEEEEE-CCCSSCEEEEEECTTCT----TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-
T ss_pred CCCccEEEEEccCCceEEEEEE-CCccCCEEEEEEeCCCC----CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-
Confidence 3444443344434444433345 68999999999999853 7999987 5 99999998764 23566778887
Q ss_pred ccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc
Q 040307 120 SEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE 198 (339)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~ 198 (339)
..|.+++|+| ++++|++++.|+.|++|+............+...+..+.++ .+++|++++.|+.+++||+....
T Consensus 87 ----~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~ 161 (340)
T 4aow_A 87 ----HFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161 (340)
T ss_dssp ----SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred ----CCEEEEEECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence 8999999998 99999999999999999999998888888888889999998 78999999999999999998766
Q ss_pred ceeeEEeCCCCCCCeEEEEEecCC-CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 199 RSTIIYENPVQDCPLLRLEWNKAD-PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
...... ..|...+..++|++.. ..++++++.|+. |++||++. .+++..+.+|...|++++|+|++ .+|++++.|
T Consensus 162 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D 236 (340)
T 4aow_A 162 KYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKD 236 (340)
T ss_dssp EEEECS--SSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTT-TEEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred eEEEEe--ccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCC-CceeeEecCCCCcEEEEEECCCC-CEEEEEeCC
Confidence 443333 3477899999998743 346788899998 99999987 66788899999999999999999 699999999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 278 SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|.|++||+.... +.....+...|..++|+|++ .+++++.|+.|++|++
T Consensus 237 g~i~iwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 237 GQAMLWDLNEGK-------------HLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDL 284 (340)
T ss_dssp CEEEEEETTTTE-------------EEEEEECSSCEEEEEECSSS-SEEEEEETTEEEEEET
T ss_pred CeEEEEEeccCc-------------eeeeecCCceEEeeecCCCC-ceeeccCCCEEEEEEC
Confidence 999999999877 55566677889999999987 4888889999999985
No 73
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-36 Score=280.25 Aligned_cols=245 Identities=17% Similarity=0.266 Sum_probs=210.6
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.+|.+.|++++|+|++. ++|++|+ | +|++|++.... ......+.+|. ..|.+++|+| ++++|++|
T Consensus 379 ~~H~~~V~~v~~~~~~~----~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~s~-~g~~l~sg 448 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNA----DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS-----HFVEDVVLSS-DGQFALSG 448 (694)
T ss_dssp ECCSSCEEEEECCTTCC----SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS-----SCEEEEEECT-TSSEEEEE
T ss_pred ccCCceeEEEEecCCCC----CEEEEEeCCCcEEEEEccCCCcccccccceecCCC-----CcEEEEEECC-CCCEEEEE
Confidence 68999999999999864 7899887 5 99999997643 12456788888 8999999998 99999999
Q ss_pred eCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307 143 SVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
+.|+.|++||+.+++....+.+|...|.+++|+ ++++|++++.|++|++||+..............|...|.+++|+|.
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 999999999999999999999999999999999 7899999999999999998765433333333457788999999984
Q ss_pred C-CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCc
Q 040307 222 D-PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 222 ~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
. ...|++++.|+. |++||++. .+....+.+|...|++++|+|++ .+|++++.||.|++||+....
T Consensus 529 ~~~~~l~s~s~d~~-v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~----------- 594 (694)
T 3dm0_A 529 TLQPTIVSASWDKT-VKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK----------- 594 (694)
T ss_dssp SSSCEEEEEETTSC-EEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTE-----------
T ss_pred CCcceEEEEeCCCe-EEEEECCC-CcEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-----------
Confidence 3 258999999999 99999987 66788899999999999999999 699999999999999998877
Q ss_pred ccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+....+...|.+++|+|++. +++++.++.|++|++
T Consensus 595 --~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~i~iwd~ 630 (694)
T 3dm0_A 595 --KLYSLEANSVIHALCFSPNRY-WLCAATEHGIKIWDL 630 (694)
T ss_dssp --EEECCBCSSCEEEEEECSSSS-EEEEEETTEEEEEET
T ss_pred --eEEEecCCCcEEEEEEcCCCc-EEEEEcCCCEEEEEC
Confidence 444455667899999999986 666677888999985
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=259.83 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=207.9
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC--CCCCCCCeEE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS--EETLNPDIVA 92 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~la 92 (339)
.|..+|.+++|+|+ +++||+|+ .||.|+||++......... .+ ..|...|.+++|+++ + .+|+
T Consensus 9 ~h~~~v~~~~~s~~---~~~l~~~~----~dg~i~iw~~~~~~~~~~~--~~-~~h~~~v~~~~~~~~~~~-----~~l~ 73 (379)
T 3jrp_A 9 AHNELIHDAVLDYY---GKRLATCS----SDKTIKIFEVEGETHKLID--TL-TGHEGPVWRVDWAHPKFG-----TILA 73 (379)
T ss_dssp ECCCCEEEEEECSS---SSEEEEEE----TTSCEEEEEEETTEEEEEE--EE-CCCSSCEEEEEECCGGGC-----SEEE
T ss_pred CCcccEEEEEEcCC---CCEEEEEE----CCCcEEEEecCCCcceeee--Ee-cCCCCcEEEEEeCCCCCC-----CEEE
Confidence 47899999999999 99999999 7999999988754433332 33 579999999999987 6 7888
Q ss_pred EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCe--eeeeeeccC
Q 040307 93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREI--LETQLVAHD 166 (339)
Q Consensus 93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~ 166 (339)
+++ | .|++||+.+++......+..|. ..|.+++|+| + +.+|++++.|+.|++||++++. ....+..|.
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHS-----ASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCC-----cceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 887 5 9999999998755677777777 8999999998 7 8999999999999999998874 344567899
Q ss_pred CceeEEEecC--------------CcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCC--CCeEEEE
Q 040307 167 REVYDISWGG--------------FNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKAD--PRFMATV 229 (339)
Q Consensus 167 ~~v~~~~~~~--------------~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~--~~~l~~~ 229 (339)
..|.+++|++ +.+|++++.|+.|++||++...... .......|...|.+++|+|+. +.+|+++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 9999999995 7899999999999999998776432 222333478899999999932 8999999
Q ss_pred eeCCCeEEEEecCCCCCceE--E--EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 230 GMDSNKVVVLDIRFPTNPVV--V--LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 230 ~~d~~~i~i~d~~~~~~~~~--~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
+.|+. |++||++....+.. . ...|...|.+++|+|++ .+|++++.||.|++|++...
T Consensus 228 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 228 SQDRT-CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ETTSC-EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEET
T ss_pred eCCCE-EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCCC
Confidence 99999 99999987432221 1 22378899999999999 59999999999999999843
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.1e-36 Score=252.77 Aligned_cols=253 Identities=17% Similarity=0.245 Sum_probs=210.9
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC--CCCCCCCCeE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP--SEETLNPDIV 91 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~~~~~l 91 (339)
..|..+|++++|+|+ +++||+|+ .||.|+||++............+ ..|...|.+++|+| ++ .+|
T Consensus 8 ~gH~~~v~~~~~~~~---~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~-----~~l 74 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFY---GRHVATCS----SDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYG-----RII 74 (351)
T ss_dssp CCCSSCEEEEEECSS---SSEEEEEE----TTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGC-----SEE
T ss_pred cccccceeEEEEcCC---CCEEEEee----CCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCC-----CEE
Confidence 357899999999999 99999999 79999999988665544432233 58999999999999 47 788
Q ss_pred EEeC-C-cEEEEeecCCcc-------eeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCeeee
Q 040307 92 ATSG-D-SLRLWEIHDDRT-------ELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREILET 160 (339)
Q Consensus 92 a~~~-~-~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~ 160 (339)
++++ | .|++||++.++. .....+..|. ..|.+++|+| + +++|++++.||.|++||+++++.+.
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-----GSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS-----SCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccC-----CceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 8887 5 999999988632 3577777777 8999999998 7 8999999999999999998876544
Q ss_pred eee-------------ccCCceeEEEec-C---CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307 161 QLV-------------AHDREVYDISWG-G---FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 161 ~~~-------------~~~~~v~~~~~~-~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
.+. .|...+.+++|+ + +..+++++.++.+.+|+...... ........|...|.+++|+| ++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~~p-~~ 226 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-HVAAKLPGHKSLIRSISWAP-SI 226 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-EEEEECCCCCSCEEEEEECC-CS
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-eeeeecCCCCcceeEEEECC-CC
Confidence 432 577889999999 4 88999999999998887776653 33344445788999999999 65
Q ss_pred ----CeEEEEeeCCCeEEEEecCCCC---------------------------------------------CceEEEecC
Q 040307 224 ----RFMATVGMDSNKVVVLDIRFPT---------------------------------------------NPVVVLSKH 254 (339)
Q Consensus 224 ----~~l~~~~~d~~~i~i~d~~~~~---------------------------------------------~~~~~~~~~ 254 (339)
++|++++.|+. |++||++... +++..+.+|
T Consensus 227 ~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 227 GRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp SCSSEEEEEEETTSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred CCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 79999999999 9999998631 456667889
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
...|++++|+|++ .+|++++.||.|++|++...+
T Consensus 306 ~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 306 NGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred cccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence 9999999999999 699999999999999999876
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.2e-36 Score=273.06 Aligned_cols=279 Identities=16% Similarity=0.215 Sum_probs=216.2
Q ss_pred ccCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC---CceEEEEcCC-CCCCCCCe
Q 040307 16 AQWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY---TPTNIAFFPS-EETLNPDI 90 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~~~~~~ 90 (339)
|...|.+++|+|+ +. +|++++ .|+.|++|+.... .... .+ ..|.. .|.+++|+|+ + ++
T Consensus 159 ~~~~v~~~~~~~~---~~~~l~~~~----~d~~v~vwd~~~~--~~~~--~~-~~~~~~~~~v~~~~~~~~~~-----~~ 221 (615)
T 1pgu_A 159 HSQRINACHLKQS---RPMRSMTVG----DDGSVVFYQGPPF--KFSA--SD-RTHHKQGSFVRDVEFSPDSG-----EF 221 (615)
T ss_dssp CSSCEEEEEECSS---SSCEEEEEE----TTTEEEEEETTTB--EEEE--EE-CSSSCTTCCEEEEEECSTTC-----CE
T ss_pred CCccEEEEEECCC---CCcEEEEEe----CCCcEEEEeCCCc--ceee--ee-cccCCCCceEEEEEECCCCC-----CE
Confidence 6789999999999 87 799999 7999999875532 2222 23 56888 9999999999 8 78
Q ss_pred EEEeC-C-cEEEEeecCCcceeEEEe-e---cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307 91 VATSG-D-SLRLWEIHDDRTELKSLL-N---SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA 164 (339)
Q Consensus 91 la~~~-~-~i~iw~~~~~~~~~~~~~-~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 164 (339)
|++++ + .|++||+.+++ ....+ . .|. ..|.+++|+ ++++|++++.|+.|++||+++++.+..+..
T Consensus 222 l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~-----~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSGE--FLKYIEDDQEPVQ-----GGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEEETTCCEEEEETTTCC--EEEECCBTTBCCC-----SCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCCC--EeEEecccccccC-----CceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 88876 4 99999999887 66676 4 666 899999998 789999999999999999998877666654
Q ss_pred c----CCceeEEEecC----------------------------------------------------------------
Q 040307 165 H----DREVYDISWGG---------------------------------------------------------------- 176 (339)
Q Consensus 165 ~----~~~v~~~~~~~---------------------------------------------------------------- 176 (339)
+ ...+.++.|.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 293 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred CCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence 3 12222332222
Q ss_pred ----------CcEEEEEeCCCcEEEEEC----------------------------------------------------
Q 040307 177 ----------FNVFASVSGDCSVRVFDL---------------------------------------------------- 194 (339)
Q Consensus 177 ----------~~~l~~~~~d~~i~i~d~---------------------------------------------------- 194 (339)
+..|++++.|+.|++||+
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence 333333333333333332
Q ss_pred ----------------------CCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 195 ----------------------RDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 195 ----------------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
.+.+... .....|...+.+++|+| ++++|++++.|+. |++||+.. .+++..+.
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~-i~iw~~~~-~~~~~~~~ 527 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISP-SETYIAAGDVMGK-ILLYDLQS-REVKTSRW 527 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECT-TSSEEEEEETTSC-EEEEETTT-TEEEECCS
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECC-CCCEEEEcCCCCe-EEEeeCCC-CcceeEee
Confidence 2211100 22234678899999998 8999999999999 99999987 56677777
Q ss_pred c-CCCCeeEEEecc----------CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecC
Q 040307 253 K-HEGSVNGISWAP----------LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSP 320 (339)
Q Consensus 253 ~-~~~~v~~~~~~p----------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p 320 (339)
+ |...|++++|+| ++ .+|++++.||.|++||+.... .+. ....|...|++++|+|
T Consensus 528 ~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~h~~~v~~l~~s~ 594 (615)
T 1pgu_A 528 AFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRPM------------KIIKALNAHKDGVNNLLWET 594 (615)
T ss_dssp CCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCTT------------CCEEETTSSTTCEEEEEEEE
T ss_pred cCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCCc------------eechhhhcCccceEEEEEcC
Confidence 7 999999999999 88 699999999999999999873 133 4557899999999999
Q ss_pred CCCceEEEecCCeEEEEeC
Q 040307 321 LELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 321 ~~~~l~~~~~d~~v~~w~v 339 (339)
+++ |++++.|+.|++|++
T Consensus 595 ~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 595 PST-LVSSGADACIKRWNV 612 (615)
T ss_dssp TTE-EEEEETTSCEEEEEE
T ss_pred CCC-eEEecCCceEEEEee
Confidence 999 999999999999985
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.5e-36 Score=260.48 Aligned_cols=276 Identities=18% Similarity=0.312 Sum_probs=225.3
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+..+|.+++| + +++|++|+ .||.|++|+.... +... .+ .+|...|.+++| ++ .+|++|+
T Consensus 132 ~~~~v~~~~~--d---~~~l~~g~----~dg~i~iwd~~~~--~~~~--~~-~~h~~~v~~l~~--~~-----~~l~sg~ 190 (435)
T 1p22_A 132 TSKGVYCLQY--D---DQKIVSGL----RDNTIKIWDKNTL--ECKR--IL-TGHTGSVLCLQY--DE-----RVIITGS 190 (435)
T ss_dssp SCCCEEEEEC--C---SSEEEEEE----SSSCEEEEESSSC--CEEE--EE-CCCSSCEEEEEC--CS-----SEEEEEE
T ss_pred CCCcEEEEEE--C---CCEEEEEe----CCCeEEEEeCCCC--eEEE--EE-cCCCCcEEEEEE--CC-----CEEEEEc
Confidence 4567888877 6 77999999 7999999886543 3332 23 589999999999 55 7888877
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee---eeeeccCCcee
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE---TQLVAHDREVY 170 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~v~ 170 (339)
| .|++||+.+++ ....+.+|. ..|.+++|++ +.+++|+.||.|++||+++++.. ..+.+|...|.
T Consensus 191 ~dg~i~vwd~~~~~--~~~~~~~h~-----~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 191 SDSTVRVWDVNTGE--MLNTLIHHC-----EAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp TTSCEEEEESSSCC--EEEEECCCC-----SCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred CCCeEEEEECCCCc--EEEEEcCCC-----CcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 5 99999999987 778888887 8999999974 59999999999999999887654 56778999999
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 171 DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 171 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
+++| +++++++++.|+.|++||+++.+....+ .. |...+.+++|+ +.++++|+.|+. |++||++. ++++..
T Consensus 261 ~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~--~~~~v~~~~~~---~~~l~~g~~dg~-i~iwd~~~-~~~~~~ 331 (435)
T 1p22_A 261 VVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTL-NG--HKRGIACLQYR---DRLVVSGSSDNT-IRLWDIEC-GACLRV 331 (435)
T ss_dssp EEEE-ETTEEEEEETTSEEEEEETTTCCEEEEE-EC--CSSCEEEEEEE---TTEEEEEETTSC-EEEEETTT-CCEEEE
T ss_pred EEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEE-cC--CCCcEEEEEeC---CCEEEEEeCCCe-EEEEECCC-CCEEEE
Confidence 9999 5889999999999999999998754443 33 67889999984 579999999999 99999997 678889
Q ss_pred EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEec
Q 040307 251 LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 251 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
+.+|...|.+++| ++ .+|++|+.||.|++||+..... +. .+...........|...|.+++| ++..+++++.
T Consensus 332 ~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~-~~--~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 332 LEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALD-PR--APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp ECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTS-TT--SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS
T ss_pred EeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCC-cc--ccccchheeeccCCCCCeEEEEe--CCCEEEEEeC
Confidence 9999999999999 55 5999999999999999987651 10 00001112345578999999999 6667889999
Q ss_pred CCeEEEEeC
Q 040307 331 VNKLQLLKV 339 (339)
Q Consensus 331 d~~v~~w~v 339 (339)
||.|++|++
T Consensus 404 Dg~i~iwd~ 412 (435)
T 1p22_A 404 DDTILIWDF 412 (435)
T ss_dssp SSEEEEEC-
T ss_pred CCEEEEEEC
Confidence 999999985
No 78
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.8e-36 Score=253.99 Aligned_cols=261 Identities=19% Similarity=0.239 Sum_probs=208.0
Q ss_pred eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc--ceeEEEeecCCCccCCCCEEEEEEcCC-CCCEEEE
Q 040307 67 IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR--TELKSLLNSNKTSEFSSAITSFDWAGF-DTRRVAT 141 (339)
Q Consensus 67 ~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~ 141 (339)
..+|.+.|++++|+|++ ++|++++ | .|++|++.++. ......+.+|. .+|++++|+|. ++++|++
T Consensus 7 ~~gH~~~v~~~~~~~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYG-----RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-----SSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp ECCCSSCEEEEEECSSS-----SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-----SCEEEEEECCGGGCSEEEE
T ss_pred CcccccceeEEEEcCCC-----CEEEEeeCCCeEEEEECCCCCCcceecceeccCC-----CcEEEEEEcCCCCCCEEEE
Confidence 36899999999999999 8888887 4 99999998753 24666778887 89999999974 4899999
Q ss_pred EeCCCeEEEEECCCC---------eeeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEE-----
Q 040307 142 CSVDTTCVIWDIDRE---------ILETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIY----- 204 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~----- 204 (339)
++.||.|++||++++ +.+..+..|...|.+++|+ + +++|++++.|+.|++||+++.+....+.
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence 999999999999886 5577788899999999999 5 8899999999999999999876433221
Q ss_pred -----eCCCCCCCeEEEEEecC--CCCeEEEEeeCCCeEEEEecCCCCCc--eEEEecCCCCeeEEEeccCCC---CeEE
Q 040307 205 -----ENPVQDCPLLRLEWNKA--DPRFMATVGMDSNKVVVLDIRFPTNP--VVVLSKHEGSVNGISWAPLYG---RRLC 272 (339)
Q Consensus 205 -----~~~~~~~~v~~~~~~p~--~~~~l~~~~~d~~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~p~~~---~~l~ 272 (339)
....+...+.+++|+|. ++.++++++.++. +.+|+... ... +..+.+|...|.+++|+|+++ .+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 11236678999999984 4889999999997 87776655 433 667788999999999999973 4999
Q ss_pred EEeCCCcEEEEEecCCCCCCCCCC---------------------------------CCCcccce-eeecccceeEEEEe
Q 040307 273 SVADDSRALIWEVVGPGYRSGNGG---------------------------------PSGDVEPE-LCYQSMAEINVVRW 318 (339)
Q Consensus 273 ~~~~dg~v~iwd~~~~~~~~~~~~---------------------------------~~~~~~~~-~~~~~~~~i~~~~~ 318 (339)
+++.||.|++||+........... ......+. ...+|...|++++|
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999999987531000000 00000112 33468899999999
Q ss_pred cCCCCceEEEecCCeEEEEeC
Q 040307 319 SPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 319 ~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|+++.|++++.|+.|++|++
T Consensus 315 s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEEE
T ss_pred cCCCCEEEEecCCCcEEEEec
Confidence 999999999999999999984
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.9e-36 Score=270.63 Aligned_cols=281 Identities=14% Similarity=0.193 Sum_probs=233.0
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCC-ceEEEEcC--CCCCCCCCeE
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYT-PTNIAFFP--SEETLNPDIV 91 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~--~~~~~~~~~l 91 (339)
.+...|.+++|+|+ +++||+++ ++.|+||+++...........+ .+|... |.+++|+| ++ ++|
T Consensus 16 ~~~~~v~~~~~spd---g~~l~~~~-----~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~-----~~l 81 (615)
T 1pgu_A 16 TQRNFTTHLSYDPT---TNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGS-----QYL 81 (615)
T ss_dssp CCTTCCCCCEEETT---TTEEEEEE-----TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTC-----CEE
T ss_pred CccCceeEEEECCC---CCEEEEec-----CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCCC-----CEE
Confidence 35689999999999 99999999 7899998887442111121133 689999 99999999 99 899
Q ss_pred EEeC-C-cEEEEeecCC------cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCeee
Q 040307 92 ATSG-D-SLRLWEIHDD------RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREILE 159 (339)
Q Consensus 92 a~~~-~-~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~ 159 (339)
++++ + .|++|++.++ +......+..|. .+|.+++|+| ++++|++++.+ +.|++|| .++.+
T Consensus 82 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~ 153 (615)
T 1pgu_A 82 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-----GPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSL 153 (615)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-----SCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred EEecCCCEEEEEeCCCCcccccccccccchhhccc-----ccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence 9887 4 9999999765 334677777777 8999999998 99999999988 6888888 56678
Q ss_pred eeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCC---CeEEEEEecCC-CCeEEEEeeCC
Q 040307 160 TQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDC---PLLRLEWNKAD-PRFMATVGMDS 233 (339)
Q Consensus 160 ~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~-~~~l~~~~~d~ 233 (339)
..+.+|...|.+++|+ ++. .+++++.|+.|++||+++.+....+ . .|.. .|.+++|+| + +++|++++.++
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~--~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg 229 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-R--THHKQGSFVRDVEFSP-DSGEFVITVGSDR 229 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-C--SSSCTTCCEEEEEECS-TTCCEEEEEETTC
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-c--ccCCCCceEEEEEECC-CCCCEEEEEeCCC
Confidence 8888999999999999 554 8999999999999999887644433 2 2556 899999999 6 99999999999
Q ss_pred CeEEEEecCCCCCceEEE-e---cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-c
Q 040307 234 NKVVVLDIRFPTNPVVVL-S---KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-Q 308 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~-~---~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~ 308 (339)
. |++||++. .+++..+ . .|...|.+++|+ ++ .+|++++.|+.|++||+...+ ..... .
T Consensus 230 ~-i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~-------------~~~~~~~ 292 (615)
T 1pgu_A 230 K-ISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSK-------------CVQKWTL 292 (615)
T ss_dssp C-EEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTE-------------EEEEEEC
T ss_pred e-EEEEECCC-CCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCc-------------EEEEEcC
Confidence 9 99999987 6677777 5 899999999999 87 699999999999999999876 33222 2
Q ss_pred ----ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 309 ----SMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 309 ----~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+...+.++.|. ++..+++++.|+.|++|++
T Consensus 293 ~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 293 DKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp CTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred CCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 24678899996 7778899999999999985
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-37 Score=265.90 Aligned_cols=247 Identities=17% Similarity=0.205 Sum_probs=192.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..+.++|++++|+|++ ++||+++ + .|++|++.++.......+.+|. ..|++++|+| ++++|++++.|
T Consensus 8 ~~~~~~v~~~~~s~~g-----~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~s~-~~~~l~s~s~d 76 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQR-----TEFVTTTATNQVELYEQDGNGWKHARTFSDHD-----KIVTCVDWAP-KSNRIVTCSQD 76 (377)
T ss_dssp EECSSCCSCCEECSSS-----SEEECCCSSSCBCEEEEETTEEEECCCBCCCS-----SCEEEEEECT-TTCCEEEEETT
T ss_pred ecCCCcEEEEEECCCC-----CEEEEecCCCEEEEEEccCCceEEEEEEecCC-----ceEEEEEEeC-CCCEEEEEeCC
Confidence 3467799999999999 8999986 5 9999999987444777888887 8999999998 89999999999
Q ss_pred CeEEEEECCCCe---eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC-CCCCeEEEEEec
Q 040307 146 TTCVIWDIDREI---LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV-QDCPLLRLEWNK 220 (339)
Q Consensus 146 ~~v~i~d~~~~~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~p 220 (339)
+.|++||+++++ ....+..|...|.+++|+ ++++|++++.|+.|++||++..+.......... |...|.+++|+|
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 999999998876 566677899999999999 789999999999999999998763111111122 678999999998
Q ss_pred CCCCeEEEEeeCCCeEEEEecCCC-----------------CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307 221 ADPRFMATVGMDSNKVVVLDIRFP-----------------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 221 ~~~~~l~~~~~d~~~i~i~d~~~~-----------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw 283 (339)
++++|++++.|+. |++||++.. .+++..+ .|...|.+++|+|++ .+|++++.||.|++|
T Consensus 157 -~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 157 -NNVLLAAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIA 232 (377)
T ss_dssp -TSSEEEEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-C
T ss_pred -CCCEEEEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEE
Confidence 8999999999999 999998631 2234445 889999999999999 699999999999999
Q ss_pred EecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 284 EVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
|+..... +. ........|...|.+++|+|+++.+++++.++.+ +|.
T Consensus 233 d~~~~~~-~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 233 YPSAPEQ-PP-------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp EECSTTS-CE-------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred ECCCCCC-cc-------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence 9999870 00 0023455788999999999999866566555555 664
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=284.16 Aligned_cols=245 Identities=11% Similarity=0.181 Sum_probs=192.7
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
+....+.|...|++++|+|+ +++||+|+ .||.|+||+.. ..+... ...|...|.+++|+| +
T Consensus 9 ~~~~~~gh~~~V~~lafspd---g~~lAsgs----~Dg~I~lw~~~--~~~~~~----~~~~~~~V~~l~fsp-g----- 69 (902)
T 2oaj_A 9 AETNKYGMSSKPIAAAFDFT---QNLLAIAT----VTGEVHIYGQQ--QVEVVI----KLEDRSAIKEMRFVK-G----- 69 (902)
T ss_dssp EEEEEEECSSCEEEEEEETT---TTEEEEEE----TTSEEEEECST--TCEEEE----ECSSCCCEEEEEEET-T-----
T ss_pred ccccccCCCCCcEEEEECCC---CCEEEEEe----CCCEEEEEeCC--CcEEEE----EcCCCCCEEEEEEcC-C-----
Confidence 34556778999999999999 99999999 79999997643 333322 356888999999999 7
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee-------
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE------- 159 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~------- 159 (339)
++|++++ | +|++||+.+++ .+..+. |. ..|++++|+| ++++|++|+.||.|++||+++++..
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~--~~~~~~-~~-----~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQK--VLTTVF-VP-----GKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCS--EEEEEE-CS-----SCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred CEEEEEECcCeEEEEECCCCc--EEEEEc-CC-----CCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence 7777776 5 99999999887 666665 44 6899999998 9999999999999999999988753
Q ss_pred ----eeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeC---------------CCCCCCeEEEEE
Q 040307 160 ----TQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYEN---------------PVQDCPLLRLEW 218 (339)
Q Consensus 160 ----~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~~~~ 218 (339)
..+.+|.+.|++++|+| +..+++++.|+.| +||+++.+....+... ..|...|.+++|
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 23467889999999994 4789999999999 9999988754433211 123467999999
Q ss_pred ecCCCCeEEEEeeCCCeEEEEecCCCCCceEE--E---ec-------------CCCCeeEEEec----cCCCCeEEEEeC
Q 040307 219 NKADPRFMATVGMDSNKVVVLDIRFPTNPVVV--L---SK-------------HEGSVNGISWA----PLYGRRLCSVAD 276 (339)
Q Consensus 219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~--~---~~-------------~~~~v~~~~~~----p~~~~~l~~~~~ 276 (339)
+| ++.+|++++.|+. |++||++. ++++.. + .. |...|++++|+ |++..+|++|+.
T Consensus 220 sp-dg~~lasgs~Dg~-i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 220 HP-NSLHIITIHEDNS-LVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp CT-TSSEEEEEETTCC-EEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred cC-CCCEEEEEECCCe-EEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99 8999999999999 99999987 454432 2 11 34579999995 443357777766
Q ss_pred C-----CcEEEEEe
Q 040307 277 D-----SRALIWEV 285 (339)
Q Consensus 277 d-----g~v~iwd~ 285 (339)
| ..+.+|++
T Consensus 297 ~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 297 ISRGDNQSLTMIDL 310 (902)
T ss_dssp STTSSCCCEEEEEE
T ss_pred CCCCCCceEEEEec
Confidence 5 37888874
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-35 Score=253.13 Aligned_cols=245 Identities=15% Similarity=0.186 Sum_probs=208.4
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..|..+|.+++|+|++ ++|++++ + .|++|++.+++......+.+|. ..|++++|+| ++++|++++.|
T Consensus 5 ~~~~~~i~~~~~s~~~-----~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~l~~~~~d 73 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDR-----TQIAICPNNHEVHIYEKSGNKWVQVHELKEHN-----GQVTGVDWAP-DSNRIVTCGTD 73 (372)
T ss_dssp ESCSSCCCEEEECTTS-----SEEEEECSSSEEEEEEEETTEEEEEEEEECCS-----SCEEEEEEET-TTTEEEEEETT
T ss_pred cccCCCeEEEEECCCC-----CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC-----CcccEEEEeC-CCCEEEEEcCC
Confidence 4588999999999999 8999886 5 9999999988656778888887 8999999998 99999999999
Q ss_pred CeEEEEECCCCeeeee--eeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-EeCCCCCCCeEEEEEecC
Q 040307 146 TTCVIWDIDREILETQ--LVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-YENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~p~ 221 (339)
|.|++||+++++.... +..|...|.+++|+ ++++|++++.|+.|++||++........ .....|...+.+++|+|
T Consensus 74 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 152 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP- 152 (372)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-
T ss_pred CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-
Confidence 9999999988874433 35788999999999 7899999999999999999987642221 11234678999999998
Q ss_pred CCCeEEEEeeCCCeEEEEecC-----------------CCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 222 DPRFMATVGMDSNKVVVLDIR-----------------FPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~-----------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
++++|++++.|+. |++||++ ...+++..+..|...|.+++|+|++ .+|++++.|+.|++||
T Consensus 153 ~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 153 NSVLLAAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TSSEEEEEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEE
T ss_pred CCCEEEEEcCCCC-EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEE
Confidence 8999999999999 9999964 1256677888999999999999999 6999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 285 VVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+...+ .......|...|.+++|+|++. +++++.|+.|++|++
T Consensus 231 ~~~~~------------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 231 ADKKM------------AVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTY 272 (372)
T ss_dssp GGGTT------------EEEEEECSSCCEEEEEEEETTE-EEEEETTSSCEEEEE
T ss_pred CCCCc------------eeEEEccCCCCeEEEEEecCCC-EEEEEeCCeEEEEEc
Confidence 99877 2335557888999999999997 555559999999984
No 83
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=279.07 Aligned_cols=314 Identities=11% Similarity=0.065 Sum_probs=217.4
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccccee------eEeecCCCCceEEEEc
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADN------RLIFDHPYTPTNIAFF 80 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~~ 80 (339)
+++.+..+.+...|++++|+|+ +++|++|+ .||.|++|++........... ....+|.+.|.+++|+
T Consensus 88 ~~~~~~~~~~~~~V~~v~~sp~---g~~l~sgs----~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 88 SQKVLTTVFVPGKITSIDTDAS---LDWMLIGL----QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp TCSEEEEEECSSCEEEEECCTT---CSEEEEEE----TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEECCC---CCEEEEEc----CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 3566777778889999999999 99999999 899999988764432100000 0114689999999999
Q ss_pred CCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC-------------CccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 81 PSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK-------------TSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 81 ~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
|++. .+|++|+ + .| +||+++++ ....+..|. ...+...|++++|+| ++++|++++.|
T Consensus 161 p~~~----~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~D 232 (902)
T 2oaj_A 161 PRDI----GTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHED 232 (902)
T ss_dssp TTEE----EEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETT
T ss_pred cCCC----CEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECC
Confidence 9742 5777776 4 88 99999886 666666551 012236799999998 89999999999
Q ss_pred CeEEEEECCCCeeeee--e---ec-------------cCCceeEEEec----C--CcEEEEEeCC-----CcEEEEEC--
Q 040307 146 TTCVIWDIDREILETQ--L---VA-------------HDREVYDISWG----G--FNVFASVSGD-----CSVRVFDL-- 194 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~--~---~~-------------~~~~v~~~~~~----~--~~~l~~~~~d-----~~i~i~d~-- 194 (339)
|.|++||+++++++.. + .. |...|++++|+ + +.+|++|+.| ..+.+|++
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 9999999998876543 2 11 34579999995 1 2456666554 25666652
Q ss_pred ---------------------------------------------------------------------CCCcceeeE--
Q 040307 195 ---------------------------------------------------------------------RDKERSTII-- 203 (339)
Q Consensus 195 ---------------------------------------------------------------------~~~~~~~~~-- 203 (339)
.++......
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence 111100000
Q ss_pred --EeCCCCCCCeE----------------------------------EEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-
Q 040307 204 --YENPVQDCPLL----------------------------------RLEWNKADPRFMATVGMDSNKVVVLDIRFPTN- 246 (339)
Q Consensus 204 --~~~~~~~~~v~----------------------------------~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~- 246 (339)
.....+...|+ +++|+| ++++|++|+.|+. |++||+.....
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~Dgt-VrlWd~~~g~~~ 470 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGS-VRIYDASHGDIQ 470 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSE-EEEEESSCCTTT
T ss_pred CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCc-EEEEECCCcccc
Confidence 00000112233 344566 7899999999999 99999987421
Q ss_pred --ceEEE--e-----cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCC-------CCC----C-------CC--
Q 040307 247 --PVVVL--S-----KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYR-------SGN----G-------GP-- 297 (339)
Q Consensus 247 --~~~~~--~-----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~-------~~~----~-------~~-- 297 (339)
..... . +|...|++++|+|++ ++||+|+.||+|+|||+...+.. +.+ . .+
T Consensus 471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp TTBCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred CCceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 11111 1 788999999999999 69999999999999999876300 000 0 00
Q ss_pred ------------CCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 298 ------------SGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 298 ------------~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.....++ ...+|.+.|++++|+|+| +|++++.|++|+||++
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 0001122 344699999999999999 8889999999999985
No 84
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.3e-34 Score=253.42 Aligned_cols=276 Identities=19% Similarity=0.236 Sum_probs=229.4
Q ss_pred Cceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307 8 KPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 8 ~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
++.+..+. |..+|.+++|+++ +|++|+ .||.|++|++... +... .+ ..|...|.++.|++
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~~~-----~l~s~~----~dg~i~vwd~~~~--~~~~--~~-~~h~~~v~~~~~~~----- 209 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMRDN-----IIISGS----TDRTLKVWNAETG--ECIH--TL-YGHTSTVRCMHLHE----- 209 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEETT-----EEEEEE----TTSCEEEEETTTT--EEEE--EE-CCCSSCEEEEEEET-----
T ss_pred CcEEEEEcCCCCCEEEEEecCC-----EEEEEe----CCCeEEEEECCcC--cEEE--EE-CCCCCcEEEEEecC-----
Confidence 44444444 6789999999754 899999 7999999887643 3322 33 57999999999963
Q ss_pred CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA 164 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 164 (339)
..+++++ | .|++||+.+++ ....+.+|. ..|.+++| +++++++|+.||.|++||+++++.+..+.+
T Consensus 210 --~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~-----~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (445)
T 2ovr_B 210 --KRVVSGSRDATLRVWDIETGQ--CLHVLMGHV-----AAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277 (445)
T ss_dssp --TEEEEEETTSEEEEEESSSCC--EEEEEECCS-----SCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred --CEEEEEeCCCEEEEEECCCCc--EEEEEcCCc-----ccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence 4666666 5 99999999887 778888887 89999998 568999999999999999999999999999
Q ss_pred cCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 165 HDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 165 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
|...|.+++| ++.++++++.|+.|++||+++++....+ . .|...+.++.++ ++++++++.|+. |++||++.
T Consensus 278 ~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~--~~~~~v~~~~~~---~~~l~~~~~dg~-i~vwd~~~- 348 (445)
T 2ovr_B 278 HTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTL-T--GHQSLTSGMELK---DNILVSGNADST-VKIWDIKT- 348 (445)
T ss_dssp CSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEE-C--CCCSCEEEEEEE---TTEEEEEETTSC-EEEEETTT-
T ss_pred CCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEE-c--CCcccEEEEEEe---CCEEEEEeCCCe-EEEEECCC-
Confidence 9999999999 6889999999999999999998754433 2 366788888874 579999999999 99999987
Q ss_pred CCceEEEec---CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee------ecccceeEE
Q 040307 245 TNPVVVLSK---HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC------YQSMAEINV 315 (339)
Q Consensus 245 ~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~ 315 (339)
.+++..+.. |...|.+++|+ + .+|++++.||.|++||+..++ .... ..|.+.|++
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFN--K-NFVITSSDDGTVKLWDLKTGE-------------FIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCC-------------EEEEEEECTTGGGTCEEEE
T ss_pred CcEEEEEccCCCCCCCEEEEEEC--C-CEEEEEeCCCeEEEEECCCCc-------------eeeeeeccccCCCCceEEE
Confidence 667788876 78899999996 3 589999999999999999887 3322 267889999
Q ss_pred EEecCCCCceEEEecCCe----EEEEeC
Q 040307 316 VRWSPLELDWIAIAFVNK----LQLLKV 339 (339)
Q Consensus 316 ~~~~p~~~~l~~~~~d~~----v~~w~v 339 (339)
++|+|++..+++++.||+ |.+|++
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 999999987888899997 999984
No 85
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-35 Score=287.74 Aligned_cols=289 Identities=13% Similarity=0.179 Sum_probs=235.8
Q ss_pred Cceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307 8 KPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 8 ~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
++.+..+. |..+|.+++|+|+ +++||+|+ .|+.|+||++... .... .+ ..|...|.+++|+|++..
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~----~d~~v~vwd~~~~--~~~~--~~-~~~~~~v~~~~~~~~~~~- 713 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSSD---DSYIATCS----ADKKVKIWDSATG--KLVH--TY-DEHSEQVNCCHFTNKSNH- 713 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECTT---SSEEEEEE----TTSEEEEEETTTC--CEEE--EE-ECCSSCEEEEEECSSSSC-
T ss_pred CCEEEEeccCCCCEEEEEEecC---CCEEEEEe----CCCeEEEEECCCC--ceEE--EE-cCCCCcEEEEEEecCCCc-
Confidence 34445544 7889999999999 99999999 7999999887653 3332 33 589999999999996521
Q ss_pred CCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee--
Q 040307 87 NPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-- 162 (339)
Q Consensus 87 ~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-- 162 (339)
.++++++ | .|++||+.+++ ....+.+|. ..|++++|+| ++++|++++.||.|++||+++++....+
T Consensus 714 --~~l~sg~~d~~v~vwd~~~~~--~~~~~~~h~-----~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 783 (1249)
T 3sfz_A 714 --LLLATGSNDFFLKLWDLNQKE--CRNTMFGHT-----NSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINV 783 (1249)
T ss_dssp --CEEEEEETTSCEEEEETTSSS--EEEEECCCS-----SCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred --eEEEEEeCCCeEEEEECCCcc--hhheecCCC-----CCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence 6788877 4 99999999987 788888888 8999999998 9999999999999999998776433222
Q ss_pred -----------------------------------------------------eccCCceeEEEec-CCcEEEEEeCCCc
Q 040307 163 -----------------------------------------------------VAHDREVYDISWG-GFNVFASVSGDCS 188 (339)
Q Consensus 163 -----------------------------------------------------~~~~~~v~~~~~~-~~~~l~~~~~d~~ 188 (339)
.+|...|.+++|+ ++.++++++.|+.
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 1577889999999 7999999999999
Q ss_pred EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC-------------------------
Q 040307 189 VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF------------------------- 243 (339)
Q Consensus 189 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~------------------------- 243 (339)
|++||+.++...... . .|...|.+++|+| ++.+|++++.|+. |++||+..
T Consensus 864 v~vwd~~~~~~~~~~-~--~h~~~v~~v~~sp-dg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 864 VELWNIDSRLKVADC-R--GHLSWVHGVMFSP-DGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938 (1249)
T ss_dssp EEEEETTTTEEEEEE-C--CCSSCEEEEEECT-TSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred EEEEEcCCCceeeec-C--CCccceEEEEECC-CCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence 999999987643332 2 3677888888887 7888888888887 88887431
Q ss_pred -----------------------------------------------------CCCceEEEecCCCCeeEEEeccCCCCe
Q 040307 244 -----------------------------------------------------PTNPVVVLSKHEGSVNGISWAPLYGRR 270 (339)
Q Consensus 244 -----------------------------------------------------~~~~~~~~~~~~~~v~~~~~~p~~~~~ 270 (339)
.......+.+|...|.+++|+|++ ++
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~ 1017 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KT 1017 (1249)
T ss_dssp EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SC
T ss_pred EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CE
Confidence 023445566788999999999999 69
Q ss_pred EEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 271 LCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 271 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|++++.||.|++||+.... ......|...|.+++|+|++ .+++++.|+.|++|++
T Consensus 1018 l~s~~~dg~i~vwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGD-------------YVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp EEEECSSSBEEEEETTTTE-------------EECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEET
T ss_pred EEEEcCCCEEEEEECCCCc-------------eEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEEC
Confidence 9999999999999999877 45566889999999999987 5889999999999985
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5e-35 Score=254.79 Aligned_cols=260 Identities=17% Similarity=0.349 Sum_probs=211.0
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC------CcccceeeEeecCCCCceEEEEcCCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET------SDFSADNRLIFDHPYTPTNIAFFPSE 83 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~ 83 (339)
....+.|.+.|.+++|+|+ ++.+||+|+ .+|.|++|++.... ........+ ..|...|.+++|+|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~--~~~~lat~~----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQ--NACVIATKT----PSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNL 193 (430)
T ss_dssp EEEEEEESSCCSEEEEETT--EEEEEEEEC----SSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTS
T ss_pred EEEEEcCCCcEEEEEECCC--CCcEEEEEC----CCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCC
Confidence 3556778999999999996 267899998 79999999987521 111221133 5899999999999998
Q ss_pred CCCCCCeEEEeC-C-cEEEEeecCCc-----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 040307 84 ETLNPDIVATSG-D-SLRLWEIHDDR-----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE 156 (339)
Q Consensus 84 ~~~~~~~la~~~-~-~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 156 (339)
. .+|++|+ + .|++|++.... ......+.+|. ..|.+++|+|.++.+|++++.||.|++||++++
T Consensus 194 ~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 194 N----GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT-----AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp T----TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS-----SCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred C----CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC-----CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 2 3888887 4 99999998743 11244566676 899999999867889999999999999999987
Q ss_pred ---eeeeeeeccCCceeEEEec-CCc-EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307 157 ---ILETQLVAHDREVYDISWG-GFN-VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231 (339)
Q Consensus 157 ---~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 231 (339)
+.+..+..|...|++++|+ ++. +|++++.|+.|++||++....+...... |...|.+++|+|.+..+|++++.
T Consensus 265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEET
T ss_pred CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeC
Confidence 4677778899999999999 454 7999999999999999986555554554 67899999999954567999999
Q ss_pred CCCeEEEEecCCCC-------------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 232 DSNKVVVLDIRFPT-------------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 232 d~~~i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
|+. |++||++... ..+..+.+|...|++++|+|+++.+|++++.||.|+||++...
T Consensus 343 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 343 DRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCc-EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999 9999998632 4566777899999999999999548999999999999999764
No 87
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=252.77 Aligned_cols=280 Identities=12% Similarity=0.050 Sum_probs=216.5
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCc-ccceeeE-----------------------------
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSD-FSADNRL----------------------------- 66 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~-~~~~~~~----------------------------- 66 (339)
..++.+++|+|+ |++|+++. ++.|++|++...... ... .+
T Consensus 4 ~~p~~~v~~s~d---g~~l~~~~-----~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (450)
T 2vdu_B 4 IHPLQNLLTSRD---GSLVFAII-----KNCILSFKYQSPNHWEFAG--KWSDDFDKIQESRNTTAKEQQGQSSENENEN 73 (450)
T ss_dssp ECCCCEEEECSS---SSEEEEEE-----TTEEEEEEEETTTEEEEEE--EEECCC-------------------------
T ss_pred cccEEEEEecCC---CCEEEEEe-----CCeEEEEECCCCCcceeee--ecCCccccccccccccchhhccccccccccc
Confidence 468999999999 99777776 889999887544300 000 00
Q ss_pred ------------------------eecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeec--CCcceeEEEee--
Q 040307 67 ------------------------IFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIH--DDRTELKSLLN-- 115 (339)
Q Consensus 67 ------------------------~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~--~~~~~~~~~~~-- 115 (339)
...|.+.|.+++|+|++ ++| ++++ + .|++|++. +++ ....+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-----~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~ 146 (450)
T 2vdu_B 74 KKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-----SRLIACADSDKSLLVFDVDKTSKN--VLKLRKRF 146 (450)
T ss_dssp --------------------------CCCCCEEEEEECTTS-----SEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEE
T ss_pred cccccCcCccccccCccccCCCCCCCccCCceEEEEEcCCC-----CEEEEEECCCCeEEEEECcCCCCc--eeeeeecc
Confidence 01345579999999999 675 7776 4 99999998 665 555554
Q ss_pred cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee----eeeccCCceeEEEec-C---CcEEEEEeCCC
Q 040307 116 SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET----QLVAHDREVYDISWG-G---FNVFASVSGDC 187 (339)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----~~~~~~~~v~~~~~~-~---~~~l~~~~~d~ 187 (339)
.+. ..|++++|+| ++++|++++.+|.|++|++.+++... .+.+|...|++++|+ + +.+|++++.|+
T Consensus 147 ~~~-----~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~ 220 (450)
T 2vdu_B 147 CFS-----KRPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE 220 (450)
T ss_dssp ECS-----SCEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred cCC-----CCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence 444 7899999998 99999999999999999998877544 778899999999999 7 78999999999
Q ss_pred cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--------------
Q 040307 188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-------------- 253 (339)
Q Consensus 188 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-------------- 253 (339)
.|++||+++++....+... |...|.+++|+ ++++|++++.|+. |++||++. ++++..+..
T Consensus 221 ~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s--d~~~l~s~~~d~~-v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 221 HIKISHYPQCFIVDKWLFG--HKHFVSSICCG--KDYLLLSAGGDDK-IFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp CEEEEEESCTTCEEEECCC--CSSCEEEEEEC--STTEEEEEESSSE-EEEEETTT-CCEEEEEECHHHHGGGCCTTSBC
T ss_pred cEEEEECCCCceeeeeecC--CCCceEEEEEC--CCCEEEEEeCCCe-EEEEECCC-CcEeeeecchhhhhhhhhhcccc
Confidence 9999999988755443333 77899999998 8899999999998 99999987 556666652
Q ss_pred -----------CCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEe--cCCCCCCCCCCCCCccccee-eecccceeEEEEe
Q 040307 254 -----------HEGSVNGISWAPLYGRRLCSVA-DDSRALIWEV--VGPGYRSGNGGPSGDVEPEL-CYQSMAEINVVRW 318 (339)
Q Consensus 254 -----------~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ 318 (339)
....|.+++|+|++ .+|++++ .|+.|++|++ .... .+.... ...+ ..|.+++|
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~----------~l~~~~~~~~~-~~v~~~~~ 362 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKG----------DLALKQIITFP-YNVISLSA 362 (450)
T ss_dssp ----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTT----------CEEEEEEEECS-SCEEEEEE
T ss_pred cccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCC----------ceeeccEeccC-CceEEEEe
Confidence 23578999999999 5888888 8999999999 4432 112332 3334 88999999
Q ss_pred cCCCCceEEEec-------CCeEEEEe
Q 040307 319 SPLELDWIAIAF-------VNKLQLLK 338 (339)
Q Consensus 319 ~p~~~~l~~~~~-------d~~v~~w~ 338 (339)
+|++ .+++++. ++.|++|.
T Consensus 363 ~~~~-~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 363 HNDE-FQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp ETTE-EEEEECCTTCCSSCCCSEEEEE
T ss_pred cCCc-EEEEEecccCCCCCCcceEEEE
Confidence 9964 4555432 45578885
No 88
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.9e-34 Score=249.76 Aligned_cols=268 Identities=17% Similarity=0.216 Sum_probs=223.7
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.+.+.. +++++ +++|++|+ .||.|++|++.... ... .+ .+|...|.+++|+ + .+++++
T Consensus 116 ~h~~~v~~-~~~~~---g~~l~sg~----~dg~i~vwd~~~~~--~~~--~~-~~h~~~v~~~~~~--~-----~~l~s~ 175 (445)
T 2ovr_B 116 GHDDHVIT-CLQFC---GNRIVSGS----DDNTLKVWSAVTGK--CLR--TL-VGHTGGVWSSQMR--D-----NIIISG 175 (445)
T ss_dssp CSTTSCEE-EEEEE---TTEEEEEE----TTSCEEEEETTTCC--EEE--EC-CCCSSCEEEEEEE--T-----TEEEEE
T ss_pred ccCCCcEE-EEEEc---CCEEEEEE----CCCcEEEEECCCCc--EEE--EE-cCCCCCEEEEEec--C-----CEEEEE
Confidence 35565533 46677 88999999 79999998876443 222 22 5899999999998 3 577777
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
+ | .|++||+.+++ ....+.+|. ..|.++.|+ ++.+++|+.||.|++||+++++.+..+.+|...|.++
T Consensus 176 ~~dg~i~vwd~~~~~--~~~~~~~h~-----~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 176 STDRTLKVWNAETGE--CIHTLYGHT-----STVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp ETTSCEEEEETTTTE--EEEEECCCS-----SCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred eCCCeEEEEECCcCc--EEEEECCCC-----CcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 6 5 99999999886 778888888 899999996 4789999999999999999999999999999999999
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 173 SWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
+| +++++++++.|+.|++||+++.+....+ . .|...+.+++| ++.++++++.|+. |++||++. .+++..+.
T Consensus 246 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~---~~~~l~~~~~d~~-i~i~d~~~-~~~~~~~~ 316 (445)
T 2ovr_B 246 QY-DGRRVVSGAYDFMVKVWDPETETCLHTL-Q--GHTNRVYSLQF---DGIHVVSGSLDTS-IRVWDVET-GNCIHTLT 316 (445)
T ss_dssp EE-CSSCEEEEETTSCEEEEEGGGTEEEEEE-C--CCSSCEEEEEE---CSSEEEEEETTSC-EEEEETTT-CCEEEEEC
T ss_pred EE-CCCEEEEEcCCCEEEEEECCCCcEeEEe-c--CCCCceEEEEE---CCCEEEEEeCCCe-EEEEECCC-CCEEEEEc
Confidence 99 5889999999999999999987644433 2 36789999998 6789999999999 99999987 67788999
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eee---cccceeEEEEecCCCCceEEE
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCY---QSMAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~i~~~~~~p~~~~l~~~ 328 (339)
+|...+.++.++ + .+|++++.||.|++||+.... +. ... .|...|++++|++ ..++++
T Consensus 317 ~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~--~~l~s~ 378 (445)
T 2ovr_B 317 GHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQ-------------CLQTLQGPNKHQSAVTCLQFNK--NFVITS 378 (445)
T ss_dssp CCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC-------------EEEEECSTTSCSSCEEEEEECS--SEEEEE
T ss_pred CCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCc-------------EEEEEccCCCCCCCEEEEEECC--CEEEEE
Confidence 999999988874 4 489999999999999998877 33 232 2788999999964 578899
Q ss_pred ecCCeEEEEeC
Q 040307 329 AFVNKLQLLKV 339 (339)
Q Consensus 329 ~~d~~v~~w~v 339 (339)
+.||.|++|++
T Consensus 379 ~~dg~v~iwd~ 389 (445)
T 2ovr_B 379 SDDGTVKLWDL 389 (445)
T ss_dssp ETTSEEEEEET
T ss_pred eCCCeEEEEEC
Confidence 99999999985
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=245.84 Aligned_cols=242 Identities=14% Similarity=0.186 Sum_probs=211.6
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|...|++++|+|++ ++|++++ + .|++||+.+++ ....+.+|. ..|.+++|+| ++++|++++.|
T Consensus 29 ~~h~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~~~d 95 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEG-----DLLFSCSKDSSASVWYSLNGE--RLGTLDGHT-----GTIWSIDVDC-FTKYCVTGSAD 95 (369)
T ss_dssp ECCSSCEEEEEECTTS-----CEEEEEESSSCEEEEETTTCC--EEEEECCCS-----SCEEEEEECT-TSSEEEEEETT
T ss_pred EEeeceEEEEEEcCCC-----CEEEEEeCCCEEEEEeCCCch--hhhhhhhcC-----CcEEEEEEcC-CCCEEEEEeCC
Confidence 6899999999999999 8888887 5 99999999887 788888888 8999999998 99999999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC-----CcEEEEECCCCcceeeE----------EeCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD-----CSVRVFDLRDKERSTII----------YENPVQ 209 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~----------~~~~~~ 209 (339)
|.|++||+++++.+..+. +...+.+++|+ +++++++++.+ +.|++||++........ ......
T Consensus 96 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 999999999999888887 88899999999 79999999999 99999999876532211 122112
Q ss_pred CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
...+.+++|+| ++++|++++.++. |++||++....++..+..|...|.+++|+|++ .+|++++.|+.|++||+....
T Consensus 175 ~~~~~~~~~~~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 175 LDAATVAGWST-KGKYIIAGHKDGK-ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp CCCEEEEEECG-GGCEEEEEETTSE-EEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC
T ss_pred ccceeEEEEcC-CCCEEEEEcCCCE-EEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc
Confidence 23899999998 8999999999998 99999998667788899999999999999999 699999999999999999877
Q ss_pred CCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC--------------eEEEEeC
Q 040307 290 YRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN--------------KLQLLKV 339 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~--------------~v~~w~v 339 (339)
......+...+..++|+|+++.+++++.++ .+++|++
T Consensus 252 -------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 252 -------------VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp -------------EEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred -------------eeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 555556888999999999999988888887 7888874
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-34 Score=269.37 Aligned_cols=303 Identities=14% Similarity=0.160 Sum_probs=235.0
Q ss_pred CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
+++.+..+. |..+|.+++|+|+ +++||+|+ .||.|++|++.... ... .+ ..|...|.+++|+|++
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~----~dg~i~vw~~~~~~--~~~--~~-~~~~~~v~~~~~s~~~-- 109 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIAR---KNWIIVGS----DDFRIRVFNYNTGE--KVV--DF-EAHPDYIRSIAVHPTK-- 109 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGG---GTEEEEEE----TTSEEEEEETTTCC--EEE--EE-ECCSSCEEEEEECSSS--
T ss_pred CCceEEEEecCCCcEEEEEEeCC---CCEEEEEe----CCCeEEEEECCCCc--EEE--EE-ecCCCCEEEEEEeCCC--
Confidence 344555555 7889999999999 99999999 79999998876543 222 22 5799999999999999
Q ss_pred CCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307 86 LNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV 163 (339)
Q Consensus 86 ~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 163 (339)
.+|++++ + .|++|+++++. .....+.+|. ..|.+++|+|.+++.|++++.||.|++||+.+++....+.
T Consensus 110 ---~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 110 ---PYVLSGSDDLTVKLWNWENNW-ALEQTFEGHE-----HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp ---SEEEEEETTSEEEEEEGGGTS-EEEEEEECCS-----SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred ---CEEEEEcCCCEEEEEECCCCc-eEEEEEcCCC-----CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence 7888877 4 99999998863 3667777887 8999999998678899999999999999998888777776
Q ss_pred ccC-CceeEEEec---CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307 164 AHD-REVYDISWG---GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVL 239 (339)
Q Consensus 164 ~~~-~~v~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~ 239 (339)
.+. ..+.+++|+ ++.+|++++.|+.|++||+++++....+ .. |...+.+++|+| ++.+|++++.|+. |++|
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~--~~~~v~~~~~~~-~~~~l~~~~~dg~-v~vw 255 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EG--HMSNVSFAVFHP-TLPIIISGSEDGT-LKIW 255 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-EC--CSSCEEEEEECS-SSSEEEEEETTSC-EEEE
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cC--CCCCEEEEEEcC-CCCEEEEEeCCCe-EEEE
Confidence 554 889999998 4789999999999999999987754433 33 678999999998 8999999999999 9999
Q ss_pred ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC----CCC---------CC-----------
Q 040307 240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY----RSG---------NG----------- 295 (339)
Q Consensus 240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~----~~~---------~~----------- 295 (339)
|+.. ...+..+..|...+.+++|+|++..++++++.++.+.+|++..... .+. ..
T Consensus 256 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 256 NSST-YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp ETTT-CSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECC
T ss_pred ECCC-CcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecc
Confidence 9987 6778889999999999999999855545555577889998765431 000 00
Q ss_pred -------CCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 296 -------GPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 296 -------~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.............+...+.+++|+|+|+.+++++ |+.+.+|++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred cccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 0000000111123455678888998887655555 888888863
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-35 Score=252.69 Aligned_cols=264 Identities=17% Similarity=0.160 Sum_probs=207.0
Q ss_pred EeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC----CCEEE
Q 040307 66 LIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD----TRRVA 140 (339)
Q Consensus 66 ~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~ 140 (339)
+..+|...|++++|+|+.....+.+++++++ .|++|++.+++ .+..+..+....+...|++++|+| + +.+|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~ 89 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG--EIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLA 89 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG--CEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc--EEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEE
Confidence 3358999999999998511011146666666 99999999776 555555544333447899999998 6 67999
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307 141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (339)
+|+.||.|++||+++++.+..+.+|...|.+++|+ ++++|++++.|+.|++||+++++....+.....|...|.+++|
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 99999999999999999999999999999999999 4789999999999999999988755554322457889999999
Q ss_pred ecCCCCeEEEEeeCCCeEEEEecCCCCCce----------------------------EEEecCCCCeeEEEeccCCCCe
Q 040307 219 NKADPRFMATVGMDSNKVVVLDIRFPTNPV----------------------------VVLSKHEGSVNGISWAPLYGRR 270 (339)
Q Consensus 219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~----------------------------~~~~~~~~~v~~~~~~p~~~~~ 270 (339)
+| ++++|++++.|+. |++||++.. +.. .....|...|.+++|+ + .+
T Consensus 170 ~~-~~~~l~~~~~dg~-i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~ 243 (366)
T 3k26_A 170 DL-LGEKIMSCGMDHS-LKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DL 243 (366)
T ss_dssp CT-TSSEEEEEETTSC-EEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TE
T ss_pred CC-CCCEEEEecCCCC-EEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CE
Confidence 98 8999999999999 999999862 222 2233489999999999 5 59
Q ss_pred EEEEeCCCcEEEEEecCCCCCCCCCCCC--Cccc-ceeeecccceeEEEEecCC--CCceEEEecCCeEEEEeC
Q 040307 271 LCSVADDSRALIWEVVGPGYRSGNGGPS--GDVE-PELCYQSMAEINVVRWSPL--ELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 271 l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~i~~~~~~p~--~~~l~~~~~d~~v~~w~v 339 (339)
|++++.|+.|++||+..... +...... .... ......|...|++++|+|+ ++.|++++.|+.|++|++
T Consensus 244 l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMED-DIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EEEECSSSEEEEEEESSTTC-CGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred EEEEecCCEEEEEeCCCccc-cccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 99999999999999988761 1000000 0001 1234467888999999999 988889999999999985
No 92
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-36 Score=263.87 Aligned_cols=249 Identities=12% Similarity=0.076 Sum_probs=195.6
Q ss_pred ecCCCCceEEEEcCCCCCC----CCCeEEE-------------------eC-C-cEEEEeecCCccee--EEEeecCCCc
Q 040307 68 FDHPYTPTNIAFFPSEETL----NPDIVAT-------------------SG-D-SLRLWEIHDDRTEL--KSLLNSNKTS 120 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~----~~~~la~-------------------~~-~-~i~iw~~~~~~~~~--~~~~~~~~~~ 120 (339)
+.+.+.|.+++|+|++... ..++||+ ++ | +|+||++.+++... ...+.+|.
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~-- 207 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF-- 207 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC--
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC--
Confidence 4577889999999875110 0124444 43 4 89999998876222 23456666
Q ss_pred cCCCCEEEEEEcCC-----CCCEEEEEeCCCeEEEEECCCCee-----------eeeeeccCCceeEEEecCCcEEEEEe
Q 040307 121 EFSSAITSFDWAGF-----DTRRVATCSVDTTCVIWDIDREIL-----------ETQLVAHDREVYDISWGGFNVFASVS 184 (339)
Q Consensus 121 ~~~~~i~~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~l~~~~ 184 (339)
..|.+++|+|. ++.+||+++.||+|++||+..++. ...+.+|...|++++|+++..|++|+
T Consensus 208 ---~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs 284 (524)
T 2j04_B 208 ---GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGF 284 (524)
T ss_dssp ---CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEE
T ss_pred ---CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 78999999983 257999999999999999976632 23567899999999999667899999
Q ss_pred CCCcEEEEECCCCcceeeEEeCCCCCCCeEEE--EEecCCC-CeEEEEeeCCCeEEEEecCCCCCceEEEecCCC--Cee
Q 040307 185 GDCSVRVFDLRDKERSTIIYENPVQDCPLLRL--EWNKADP-RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEG--SVN 259 (339)
Q Consensus 185 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~-~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~--~v~ 259 (339)
.||+|++||++++..+...... |...|.++ +|+| ++ .+|++++.|+. |+|||++. .+++..+.+|.. .|.
T Consensus 285 ~DgtV~lWD~~~~~~~~~~~~~--H~~~V~sv~~~~s~-~g~~~laS~S~D~t-vklWD~~~-~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 285 KNGFVAEFDLTDPEVPSFYDQV--HDSYILSVSTAYSD-FEDTVVSTVAVDGY-FYIFNPKD-IATTKTTVSRFRGSNLV 359 (524)
T ss_dssp TTSEEEEEETTBCSSCSEEEEC--SSSCEEEEEEECCT-TSCCEEEEEETTSE-EEEECGGG-HHHHCEEEEECSCCSCC
T ss_pred CCCEEEEEECCCCCCceEEeec--ccccEEEEEEEcCC-CCCeEEEEeccCCe-EEEEECCC-CCcccccccccccCccc
Confidence 9999999999977544444444 77899999 4665 66 89999999999 99999987 445556666653 588
Q ss_pred EEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 260 GISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 260 ~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+++|+|++ ..|++++.|++|++||++... ....+.+|...|++|+|+|+++.|++++.|++|++|++
T Consensus 360 ~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~------------~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 360 PVVYCPQI-YSYIYSDGASSLRAVPSRAAF------------AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp CEEEETTT-TEEEEECSSSEEEEEETTCTT------------CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ceEeCCCc-CeEEEeCCCCcEEEEECcccc------------cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 99999998 589999999999999998876 23456689999999999999999999999999999974
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=274.80 Aligned_cols=251 Identities=19% Similarity=0.242 Sum_probs=210.6
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEe
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCS 143 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~ 143 (339)
.+|.+.|++++|+|++ ++|++|+ | .|++|++..+.......+.+|. .+|++++|+| + +++|++|+
T Consensus 6 ~gH~~~V~~l~~s~dg-----~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~-----~~V~~l~~s~-~~~~~~l~s~s 74 (753)
T 3jro_A 6 NAHNELIHDAVLDYYG-----KRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAH-PKFGTILASCS 74 (753)
T ss_dssp --CCCCEEEECCCSSS-----CCEEEEETTTEEEEEEEETTEEEEEEEECCCS-----SCEEEEEECC-TTSCSEEEEEE
T ss_pred ccCcceeEEEEECCCC-----CeEEEEECCCcEEEEecCCCCCccceeccCCc-----CceEEEEecC-CCCCCEEEEEe
Confidence 6899999999999999 7888886 5 9999999866555778888888 8999999997 5 89999999
Q ss_pred CCCeEEEEECCCCe--eeeeeeccCCceeEEEec-C--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307 144 VDTTCVIWDIDREI--LETQLVAHDREVYDISWG-G--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 144 ~d~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (339)
.||.|++||+++++ ....+..|...|++++|+ + ++.+++++.||.|++||++.......... ..|...|.+++|
T Consensus 75 ~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v~~l~~ 153 (753)
T 3jro_A 75 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASW 153 (753)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-ECCSSCEEEEEE
T ss_pred CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-ecCCCceEEEEe
Confidence 99999999999886 677778899999999999 5 78999999999999999998753322221 236789999999
Q ss_pred ecC------------CCCeEEEEeeCCCeEEEEecCCCC---CceEEEecCCCCeeEEEeccC---CCCeEEEEeCCCcE
Q 040307 219 NKA------------DPRFMATVGMDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPL---YGRRLCSVADDSRA 280 (339)
Q Consensus 219 ~p~------------~~~~l~~~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~v 280 (339)
+|. ++.++++|+.|+. |++||++... .+...+.+|...|.+++|+|+ + .+|++++.||.|
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I 231 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTC 231 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCE
T ss_pred cCcccccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEE
Confidence 985 4899999999999 9999998744 345677889999999999999 6 699999999999
Q ss_pred EEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 281 LIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
++||+....... .........|...|++++|+|+++.+++++.||.|++|++
T Consensus 232 ~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 232 IIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp EEEEESSSSSCC-------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred EEecCCCCCCcc-------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 999999865100 0011233457889999999999999999999999999985
No 94
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.4e-33 Score=248.15 Aligned_cols=279 Identities=14% Similarity=0.177 Sum_probs=221.6
Q ss_pred CCceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC--CC
Q 040307 7 KKPGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP--SE 83 (339)
Q Consensus 7 ~~~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~ 83 (339)
+++.+..+. |..+|.+++|+|+ + +|++|+ .||.|++|++... .... .+ .+|...|.+++|++ ++
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~---~-~l~s~s----~dg~i~vwd~~~~--~~~~--~~-~~h~~~v~~l~~~~~~~~ 217 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHG---G-ILVSGS----TDRTVRVWDIKKG--CCTH--VF-EGHNSTVRCLDIVEYKNI 217 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECST---T-EEEEEE----TTSCEEEEETTTT--EEEE--EE-CCCSSCEEEEEEEESSSC
T ss_pred CCcEEEEEeCCCcCEEEEEEcCC---C-EEEEEe----CCCCEEEEECCCC--cEEE--EE-CCCCCccEEEEEecCCCC
Confidence 345555554 7899999999999 7 889999 7999999887643 3322 23 57999999999995 55
Q ss_pred CCCCCCeEEEeC-C-cEEEEeecCCcce---------------------eEEEeecCCCccCCCCEEEEEEcCCCCCEEE
Q 040307 84 ETLNPDIVATSG-D-SLRLWEIHDDRTE---------------------LKSLLNSNKTSEFSSAITSFDWAGFDTRRVA 140 (339)
Q Consensus 84 ~~~~~~~la~~~-~-~i~iw~~~~~~~~---------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 140 (339)
.++++++ | .|++||+.+.... ....+.+|. ..|.++. + ++++++
T Consensus 218 -----~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~--~-~~~~l~ 284 (464)
T 3v7d_B 218 -----KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM-----ASVRTVS--G-HGNIVV 284 (464)
T ss_dssp -----EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS-----SCEEEEE--E-ETTEEE
T ss_pred -----CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc-----ceEEEEc--C-CCCEEE
Confidence 6788877 4 9999999876521 144556666 7888774 4 679999
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307 141 TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 141 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (339)
+++.|+.|++||+++++.+..+.+|...|.+++|+ +++++++++.|+.|++||+++++....+ . .|...+.+++|+
T Consensus 285 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~--~h~~~v~~~~~~ 361 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL-Q--GHTALVGLLRLS 361 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE-C--CCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e--CCCCcEEEEEEc
Confidence 99999999999999999999999999999999999 7899999999999999999988744433 3 377899999996
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG 299 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 299 (339)
+.+|++++.|+. |++||++.. ...... .+...+..++|+|++ .+|++++ ||.|++||+.+++
T Consensus 362 ---~~~l~s~s~dg~-v~vwd~~~~-~~~~~~-~~~~~~~~~~~~~~~-~~l~~~~-dg~i~iwd~~~g~---------- 423 (464)
T 3v7d_B 362 ---DKFLVSAAADGS-IRGWDANDY-SRKFSY-HHTNLSAITTFYVSD-NILVSGS-ENQFNIYNLRSGK---------- 423 (464)
T ss_dssp ---SSEEEEEETTSE-EEEEETTTC-CEEEEE-ECTTCCCEEEEEECS-SEEEEEE-TTEEEEEETTTCC----------
T ss_pred ---CCEEEEEeCCCc-EEEEECCCC-ceeeee-cCCCCccEEEEEeCC-CEEEEec-CCeEEEEECCCCc----------
Confidence 489999999999 999999873 333333 356778889999999 5999888 8999999999987
Q ss_pred ccccee--eecccceeEEEEecCCCCceEE-EecCCeEEEE
Q 040307 300 DVEPEL--CYQSMAEINVVRWSPLELDWIA-IAFVNKLQLL 337 (339)
Q Consensus 300 ~~~~~~--~~~~~~~i~~~~~~p~~~~l~~-~~~d~~v~~w 337 (339)
++. ...|...|.+++|+ +..+++ ++.|+.+.+|
T Consensus 424 ---~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 424 ---LVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ---EEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEE
T ss_pred ---EEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEE
Confidence 332 45688999999997 335554 5566665554
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-34 Score=246.39 Aligned_cols=233 Identities=17% Similarity=0.311 Sum_probs=201.1
Q ss_pred ceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeec-CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 74 PTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNS-NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
+.++.|+++ .+++++.+ .|++|++.+++ ....+.. |. ..|++++|+| ++++|++|+.||.|++|
T Consensus 96 ~~~~~~s~~------~l~~~~~d~~v~lw~~~~~~--~~~~~~~~~~-----~~v~~v~~s~-~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 96 LNLLDWSNL------NVVAVALERNVYVWNADSGS--VSALAETDES-----TYVASVKWSH-DGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp CBCEEECTT------SEEEEEETTEEEEEETTTCC--EEEEEECCTT-----CCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred EEEEeecCC------CEEEEECCCeEEEeeCCCCc--EeEeeecCCC-----CCEEEEEECC-CCCEEEEECCCCeEEEE
Confidence 556777763 56666666 99999999987 4444443 45 8999999998 99999999999999999
Q ss_pred ECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307 152 DIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231 (339)
Q Consensus 152 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 231 (339)
|+.+++.+..+.+|...|.+++|+ +++|++++.|+.|++||++........... |...|.+++|+| ++.+|++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQG--HSSEVCGLAWRS-DGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECT-TSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEEC-CCEEEEEcCCCCEEEEecccCcceeeEEcC--CCCCeeEEEEcC-CCCEEEEEeC
Confidence 999999999999999999999995 789999999999999999966555554544 778999999998 9999999999
Q ss_pred CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecc
Q 040307 232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS 309 (339)
Q Consensus 232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (339)
|+. |++||++. ..++..+..|...|.+++|+|++..++++++ .|+.|++||+.... +.....+
T Consensus 238 d~~-v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-------------~~~~~~~ 302 (401)
T 4aez_A 238 DNV-VQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-------------RVNTVDA 302 (401)
T ss_dssp TSC-EEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-------------EEEEEEC
T ss_pred CCe-EEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-------------EEEEEeC
Confidence 999 99999997 6778888899999999999998877888876 79999999999877 5666677
Q ss_pred cceeEEEEecCCCCceEEEe--cCCeEEEEeC
Q 040307 310 MAEINVVRWSPLELDWIAIA--FVNKLQLLKV 339 (339)
Q Consensus 310 ~~~i~~~~~~p~~~~l~~~~--~d~~v~~w~v 339 (339)
...|.+++|+|+++.+++++ .|+.|++|++
T Consensus 303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp SSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred CCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 88999999999999888754 8999999984
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=243.42 Aligned_cols=249 Identities=15% Similarity=0.199 Sum_probs=199.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC---CCEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD---TRRV 139 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l 139 (339)
.+|...|.+++|+|++. .++++++ + .|++|++.+++......+ +|. .+|.+++|+| + +++|
T Consensus 15 ~~h~~~v~~~~~~p~~~----~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~-----~~v~~~~~~~-~~~~~~~l 83 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSA----KFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKA-----KPIKCGTFGA-TSLQQRYL 83 (357)
T ss_dssp EECSSCEEEEEECTTSS----EEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EES-----SCEEEEECTT-CCTTTCCE
T ss_pred cCCCCceEEEEEcCCCc----eEEEecCccCCCcEEEEEeCCCCcccceeee-ccc-----CcEEEEEEcC-CCCCCceE
Confidence 57999999999999983 4666663 5 999999998873333333 555 8999999998 6 6999
Q ss_pred EEEeCCCeEEEEECCCCe-eeeeeeccCCceeEEEe------c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC-C-CC
Q 040307 140 ATCSVDTTCVIWDIDREI-LETQLVAHDREVYDISW------G-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-P-VQ 209 (339)
Q Consensus 140 ~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~------~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~-~~ 209 (339)
++++.||.|++||+++++ .+..+.+|...|.+++| + ++++|++++.|+.|++||+++.+........ . ..
T Consensus 84 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp EEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred EEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 999999999999999888 88888999999999955 5 5889999999999999999988743333332 1 12
Q ss_pred CCCeEEEE----EecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc---CCCCeEEEEeCCCcEEE
Q 040307 210 DCPLLRLE----WNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP---LYGRRLCSVADDSRALI 282 (339)
Q Consensus 210 ~~~v~~~~----~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~v~i 282 (339)
...+.+++ |+| ++++|++++.++. |++||++. .+. .....|...|.+++|+| ++ .+|++++.||.|++
T Consensus 164 ~~~v~~~~~~~~~~~-~~~~l~~~~~d~~-i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQ-EERVVCAGYDNGD-IKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHV 238 (357)
T ss_dssp CCCEEEEEEECCCC--CCCEEEEEETTSE-EEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEE
T ss_pred CCceEEEEEEeccCC-CCCEEEEEccCCe-EEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEE
Confidence 34788888 666 8999999999998 99999987 333 44567889999999999 77 69999999999999
Q ss_pred EEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC-ceEEEecCCeEEEEeC
Q 040307 283 WEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL-DWIAIAFVNKLQLLKV 339 (339)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~~d~~v~~w~v 339 (339)
||++..... ..........|...|++++|+|+++ .+++++.|+.|++|++
T Consensus 239 ~d~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 239 FDMRTQHPT-------KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp EEEEEEETT-------TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred EeCcCCCcc-------cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence 999986600 0000112237899999999999998 6778999999999984
No 97
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=256.08 Aligned_cols=265 Identities=8% Similarity=0.025 Sum_probs=205.7
Q ss_pred eeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 13 TYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 13 ~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
+-+....|.+++|+|| |+++|+++ .|++|+ + ..... .+ .+|+..|.+++|+|++ .
T Consensus 11 ~~~~~~~v~sv~~SpD---G~~iASas----~D~TV~--d--~~~~~-----~l-~gh~~~v~~V~FsPdg-----~--- 65 (588)
T 2j04_A 11 RKEFEDWKNNLTWARD---GTLYLTTF----PDISIG--Q--PKYAK-----DI-NCNSKNLFHVKEFPLE-----F--- 65 (588)
T ss_dssp SCCCSSSSCCEEECTT---SCEEEECS----SSEEEE--E--ECCCS-----CC-SSBGGGTEEEEEECCC-----C---
T ss_pred HhHhhccEEEEEECCC---CCEEEEEc----CCceee--c--ccccc-----ee-cCCCccEEEEEECCCC-----C---
Confidence 3445789999999999 99999999 799999 4 22221 22 4899999999999987 1
Q ss_pred EeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC-----
Q 040307 93 TSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR----- 167 (339)
Q Consensus 93 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~----- 167 (339)
.+.+.+|+.+.. ....+ .|. ..|.+++|+| ++.+||+++.||.|++||.+. .+..+. |..
T Consensus 66 --~~~~~~~~~~~~---~~~~~-~~~-----~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~ 130 (588)
T 2j04_A 66 --ENKLDFELAQQN---GLLNS-QPV-----CYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSR 130 (588)
T ss_dssp --CCTTTTSCCCSS---CSSTT-SCS-----CCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTT
T ss_pred --cceEEEEeCCCc---eEeec-CCC-----CcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccc
Confidence 114444443322 22222 224 7899999999 999999999999999999643 566666 665
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcc------eeeEEe--CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKER------STIIYE--NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV 238 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i 238 (339)
.+.+++|+ ++++|++|+.||+|++||+.++.. ...... ..+|...|.+++|+| ++ +++++.|+. +++
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~t-Vrl 206 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNS-VFS 206 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCC-EEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCe-EEE
Confidence 49999999 899999999999999999998753 111111 134678999999998 77 788888998 999
Q ss_pred EecCCCCC--ceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc-eeeecccceeE
Q 040307 239 LDIRFPTN--PVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP-ELCYQSMAEIN 314 (339)
Q Consensus 239 ~d~~~~~~--~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~ 314 (339)
||+..... ...++ .+|...|.+++|+ + ..||+++ ++.|++||+.... . ....+|...|.
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~-------------~~~~~~gh~~~V~ 269 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYS-------------ISSLKTGSLENFH 269 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTE-------------EEEEECSCCSCCC
T ss_pred EECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCe-------------EEEEEcCCCceEE
Confidence 99987432 23456 4788999999999 5 5888887 6999999999877 3 34448999999
Q ss_pred EEEe--cCCCCceEEEecCCeEEEEeC
Q 040307 315 VVRW--SPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 315 ~~~~--~p~~~~l~~~~~d~~v~~w~v 339 (339)
+++| +|++..+++++.||+ ++|..
T Consensus 270 ~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 9999 999987777888999 99973
No 98
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.2e-34 Score=246.12 Aligned_cols=240 Identities=17% Similarity=0.276 Sum_probs=199.7
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
|...|++|+|+|+ +++||+|+ .|+.|+||++... +... .+ .+|...+.+++|+ + .+|++|+
T Consensus 146 ~~~~V~sv~fspd---g~~lasgs----~Dg~v~iWd~~~~--~~~~--~~-~~h~~~v~~~s~~--~-----~~l~sgs 206 (420)
T 4gga_A 146 PGEYISSVAWIKE---GNYLAVGT----SSAEVQLWDVQQQ--KRLR--NM-TSHSARVGSLSWN--S-----YILSSGS 206 (420)
T ss_dssp TTCCEEEEEECTT---SSEEEEEE----TTSCEEEEETTTT--EEEE--EE-CCCSSCEEEEEEE--T-----TEEEEEE
T ss_pred CCCcEEEEEECCC---CCEEEEEE----CCCeEEEEEcCCC--cEEE--EE-eCCCCceEEEeeC--C-----CEEEEEe
Confidence 5678999999999 99999999 7999999887643 3332 33 6899999998885 4 6888887
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeeeccCCce
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREI----LETQLVAHDREV 169 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~~~~v 169 (339)
+ .+++|+..... .....+.+|. ..+..+.|+| ++.++++++.|+.+++|+..+++ .+.....|...|
T Consensus 207 ~d~~i~~~d~~~~~-~~~~~~~~h~-----~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V 279 (420)
T 4gga_A 207 RSGHIHHHDVRVAE-HHVATLSGHS-----QEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 279 (420)
T ss_dssp TTSEEEEEETTSSS-CEEEEEECCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred CCCceeEeeecccc-eeeEEecccc-----cceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence 4 99999988764 3567788888 8999999998 99999999999999999998765 345566789999
Q ss_pred eEEEec--CCcEEEEE--eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCC
Q 040307 170 YDISWG--GFNVFASV--SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRF 243 (339)
Q Consensus 170 ~~~~~~--~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~ 243 (339)
.+++|+ ..++++++ +.|+.|++||+++++....+.. ...+.++.|+| +++.+++++ .|+. |+|||+.+
T Consensus 280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~-~~~~lv~~sg~~d~~-I~iwd~~~ 353 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSP-HYKELISGHGFAQNQ-LVIWKYPT 353 (420)
T ss_dssp EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEET-TTTEEEEEECTTTCC-EEEEETTT
T ss_pred eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecC-CCCeEEEEEecCCCE-EEEEECCC
Confidence 999999 35676664 4799999999999886555443 36899999998 666666654 6777 99999987
Q ss_pred CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.+++..+.+|.+.|++++|+|++ .+|++|+.|++|+|||+....
T Consensus 354 -~~~v~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 354 -MAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp -CCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCSS
T ss_pred -CcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence 67899999999999999999999 699999999999999998755
No 99
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.2e-34 Score=246.66 Aligned_cols=303 Identities=12% Similarity=0.087 Sum_probs=200.7
Q ss_pred eeeeccCCeeEEEeeecC-CcccEEEEeeeccccCCeEEEEecCCCCCc----ccceeeEeecCCCCceEEEEcCCCCC-
Q 040307 12 HTYMAQWPISTVAWSVRH-DRKSRLAVGSFLEDYSNKIELVNFNPETSD----FSADNRLIFDHPYTPTNIAFFPSEET- 85 (339)
Q Consensus 12 ~~~~~~~~v~~i~~sp~~-~~~~~la~g~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~- 85 (339)
+.+..+...+++.|.... +...++++|. ++.|.+|+...+... ..........+...+..+.|++....
T Consensus 10 ~~lpl~~~p~~~~w~~~~~~~~~l~a~g~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (393)
T 4gq1_A 10 YQLPLNVRPYTTTWCSQSPSCSNLLAIGH-----DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYS 84 (393)
T ss_dssp EECCTTCCEEEEEECTTSGGGTTEEEEEE-----SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEE
T ss_pred eEecCCCCCeEEEEeCCCCCCCCEEEEEC-----CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcccc
Confidence 334456678888885321 1345666666 899999876543221 11111122345555556655532100
Q ss_pred --------------CCCCeEEEeC-C-cEEEEeecCCcce---eEEEeecCCCccCCCCEEEEEEcC-------CCCCEE
Q 040307 86 --------------LNPDIVATSG-D-SLRLWEIHDDRTE---LKSLLNSNKTSEFSSAITSFDWAG-------FDTRRV 139 (339)
Q Consensus 86 --------------~~~~~la~~~-~-~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~l 139 (339)
....+||+++ | +|+|||++.++.. ....+.+|. ..|++++|+| .++++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~-----~~v~~v~~~p~~~~~~~~d~~~l 159 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH-----NFVNDIDIADVYSADNRLAEQVI 159 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS-----SCEEEEEEEEEECTTCSEEEEEE
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC-----CceEEEEEccccccccCCCCCEE
Confidence 0005788887 5 9999999988622 223355666 9999999986 367899
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-C-cEEEEEeCCCcEEEEECCCCcceeeEE-------------
Q 040307 140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-F-NVFASVSGDCSVRVFDLRDKERSTIIY------------- 204 (339)
Q Consensus 140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~d~~i~i~d~~~~~~~~~~~------------- 204 (339)
|+|+.|++|+|||++++.++..+..|...+.+++|+| + ++|++++.|+.|++||+++++......
T Consensus 160 as~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~ 239 (393)
T 4gq1_A 160 ASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL 239 (393)
T ss_dssp EEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred EEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence 9999999999999988888888888999999999994 3 589999999999999999875322211
Q ss_pred ---------eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE--------------
Q 040307 205 ---------ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI-------------- 261 (339)
Q Consensus 205 ---------~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-------------- 261 (339)
....+...+.++.|++.+++.|++++.|+. +++||+.. .+....+..|...+..+
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (393)
T 4gq1_A 240 NTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPS 317 (393)
T ss_dssp ESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC--------------------CCSCSEEEECSSCC
T ss_pred ccccceeeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECcc-CCCCceEeeecCccccEEEccccccccccCc
Confidence 112356678899998669999999999998 99999976 33344444443333333
Q ss_pred ----Eecc-CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 262 ----SWAP-LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 262 ----~~~p-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
.|+| .+..++++|+.||.|+|||+..+. .......|..+|.+++|+|+|++|++++ ++.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~------------~~~~~~~~~~~V~svafspdG~~LA~as-~~Gv~l 384 (393)
T 4gq1_A 318 LLGACPHPRYMDYFATAHSQHGLIQLINTYEKD------------SNSIPIQLGMPIVDFCWHQDGSHLAIAT-EGSVLL 384 (393)
T ss_dssp SSCCEECSSCTTEEEEEETTTTEEEEEETTCTT------------CCEEEEECSSCEEEEEECTTSSEEEEEE-SSEEEE
T ss_pred ceeEEEccCCCCEEEEEECCCCEEEEEECCCCc------------EEEEecCCCCcEEEEEEcCCCCEEEEEe-CCCeEE
Confidence 3333 233467788899999999999877 3345567888999999999998766665 455666
Q ss_pred EeC
Q 040307 337 LKV 339 (339)
Q Consensus 337 w~v 339 (339)
|++
T Consensus 385 vrL 387 (393)
T 4gq1_A 385 TRL 387 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 100
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-34 Score=247.82 Aligned_cols=242 Identities=12% Similarity=0.113 Sum_probs=203.5
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc----ceeEEEeecCCCccCCCCEEEEEEcCCC----C-
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR----TELKSLLNSNKTSEFSSAITSFDWAGFD----T- 136 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~- 136 (339)
.+|.+.|++++|+| . +|++++ | .|++|++.+.+ ......+.+|. .+|++++|+| + +
T Consensus 13 ~~h~~~i~~~~~~~-~------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~~g~ 79 (397)
T 1sq9_A 13 KAHDADIFSVSACN-S------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK-----SGLHHVDVLQ-AIERDAF 79 (397)
T ss_dssp SCSSSCEEEEEECS-S------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT-----TCEEEEEEEE-EEETTTE
T ss_pred hhhhcCeEEEEecC-C------eEEEEcCCCEEEEEECCCcccccCCCcceEEecCC-----CcEEEEEEec-ccccCCc
Confidence 58999999999998 4 555555 6 99999998875 34567777887 8999999998 7 8
Q ss_pred --CEEEEEeCCCeEEEEECCCCee-----eeeeecc-----CCceeEEEec----C-CcE-EEEEeCCCcEEEEECCC--
Q 040307 137 --RRVATCSVDTTCVIWDIDREIL-----ETQLVAH-----DREVYDISWG----G-FNV-FASVSGDCSVRVFDLRD-- 196 (339)
Q Consensus 137 --~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~-~~~-l~~~~~d~~i~i~d~~~-- 196 (339)
++|++++.||.|++||+.+++. ...+..| ...|.+++|+ + +++ |++++.|+.|++||++.
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred cccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 9999999999999999988876 7788888 5899999999 4 678 99999999999999998
Q ss_pred ----Cccee-----eEEe----CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---C---CCC
Q 040307 197 ----KERST-----IIYE----NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---H---EGS 257 (339)
Q Consensus 197 ----~~~~~-----~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~---~~~ 257 (339)
.+... .+.. ...+...+.+++|+| ++ ++++++.++. |++||++. .+++..+.. | ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~-i~i~d~~~-~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGT-VQISELST-LRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSE-EEEEETTT-TEEEEEEECCC---CCCCC
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCc-EEEEECCC-CceeEEEeccccccccCCc
Confidence 54333 3221 023678899999998 77 9999999998 99999987 677888888 8 999
Q ss_pred eeEEEeccCCCCeEEEEeCC---CcEEEEEecCCCCCCCCCCCCCcccceeeec-------------ccceeEEEEecCC
Q 040307 258 VNGISWAPLYGRRLCSVADD---SRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-------------SMAEINVVRWSPL 321 (339)
Q Consensus 258 v~~~~~~p~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~p~ 321 (339)
|.+++|+|++ .+|++++.| +.|++||+.... ....... |...|.+++|+|+
T Consensus 236 i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 236 IRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp EEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC------------EEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred cceEEECCCC-CEEEEEecCCCCceEEEEECCCCc------------ccceeccCcccccccccccccCCcEEEEEECCC
Confidence 9999999998 699999999 999999998876 2223334 8899999999999
Q ss_pred CCceEEEecCCeEEEEeC
Q 040307 322 ELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 322 ~~~l~~~~~d~~v~~w~v 339 (339)
+++|++++.|+.|++|++
T Consensus 303 ~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp SSEEEEEETTSEEEEEET
T ss_pred CCEEEEEeCCCeEEEEEc
Confidence 999999999999999985
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.3e-33 Score=237.07 Aligned_cols=285 Identities=11% Similarity=0.140 Sum_probs=204.7
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE-
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA- 92 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la- 92 (339)
..|..+|.+++|+|+ +++||+|+ ++.++||+.+.. .... ...+ ..+..+++.+++ .+++
T Consensus 16 ~~h~~~V~~v~fs~d---g~~la~g~-----~~~~~iw~~~~~--~~~~----~~~~-~~~~~~~~~~~~-----~~~~~ 75 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQD---QSCLILST-----LKSFEIYNVHPV--AHIM----SQEM-RHLSKVRMLHRT-----NYVAF 75 (355)
T ss_dssp ---CCCCCEEEECTT---SSEEEEEC-----SSEEEEEEETTE--EEEE----EEEC-SCCCEEEECTTS-----SEEEE
T ss_pred ccCCCceEEEEECCC---CCEEEEEc-----CCEEEEEecCCc--ceee----eeec-CCeEEEEEcCCC-----CEEEE
Confidence 347899999999999 99999998 456899886642 2221 1222 258889999888 5664
Q ss_pred EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccCCce
Q 040307 93 TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHDREV 169 (339)
Q Consensus 93 ~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~v 169 (339)
+++ + .|++||+.+++ .+..+. +. .+|.++.|++ + .++++ .++.|++||+.++ +.+..+.. +.
T Consensus 76 ~~~~d~~v~iWd~~~~~--~~~~~~-~~-----~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQ--DVSRIK-VD-----APVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp ECSSTTEEEEEETTTTE--EEEEEE-CS-----SCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EECCccEEEEEECCCCc--EEEEEE-CC-----CceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence 444 4 99999999887 666665 33 6899999986 3 34444 4789999999988 66666654 33
Q ss_pred eEEEecCCcEEEE--EeCCCcEEEEECCCCcc--------------e-eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 170 YDISWGGFNVFAS--VSGDCSVRVFDLRDKER--------------S-TIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 170 ~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~--------------~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
..+++++ .+++. ++.||.|++||+++... + ..... .|...|.+++|+| ++++|++++.|
T Consensus 141 ~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--~h~~~v~~~~~s~-~g~~l~s~s~d 216 (355)
T 3vu4_A 141 GVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--AHTNPIKMVRLNR-KSDMVATCSQD 216 (355)
T ss_dssp EEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEEC--CCSSCEEEEEECT-TSSEEEEEETT
T ss_pred ceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--ccCCceEEEEECC-CCCEEEEEeCC
Confidence 3445555 56665 57899999999997641 1 22233 4889999999999 99999999999
Q ss_pred CCeEEEEecCCCCCceEEEe-c-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCC-C-------CCccc
Q 040307 233 SNKVVVLDIRFPTNPVVVLS-K-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGG-P-------SGDVE 302 (339)
Q Consensus 233 ~~~i~i~d~~~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~-------~~~~~ 302 (339)
+..|++||+++ ++++..+. + |...|.+++|+|++ .+|++++.|+.|++||+........... . .....
T Consensus 217 ~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 3vu4_A 217 GTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS 294 (355)
T ss_dssp CSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred CCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence 93399999997 66788887 5 99999999999999 6999999999999999987541110000 0 00000
Q ss_pred --ce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 303 --PE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 303 --~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.. ...........++|+|++..+++++.||.+++|++
T Consensus 295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp SEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 00 00112233477999999998999999999999974
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-35 Score=255.41 Aligned_cols=280 Identities=13% Similarity=0.151 Sum_probs=205.0
Q ss_pred EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC-CCCCCCCCeEEEeC-C-cEEE
Q 040307 24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP-SEETLNPDIVATSG-D-SLRL 100 (339)
Q Consensus 24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~~~la~~~-~-~i~i 100 (339)
.|+|+ +..++++. . |+..+.... .+..+|.+.|++++|+| ++ .+||+|+ | .|+|
T Consensus 34 ~f~~~---~~~~~~~~----------~--w~~~g~~~~---~~~~~h~~~V~~~~~s~~~~-----~~l~s~s~dg~v~v 90 (437)
T 3gre_A 34 EFGPI---QEIVRSPN----------M--GNLRGKLIA---TLMENEPNSITSSAVSPGET-----PYLITGSDQGVIKI 90 (437)
T ss_dssp GGCCC---CCCCCCCC----------G--GGCCCCEEE---EECTTTTSCEEEEEEECSSS-----CEEEEEETTSEEEE
T ss_pred hcCCc---cccccccc----------c--ccccceEEe---eeccCCCCceEEEEECCCCC-----CEEEEecCCceEEE
Confidence 46677 76666654 1 443332222 33357899999999999 88 8999987 4 9999
Q ss_pred EeecC---Cc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC---CCeeeeeeec---------
Q 040307 101 WEIHD---DR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID---REILETQLVA--------- 164 (339)
Q Consensus 101 w~~~~---~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~---~~~~~~~~~~--------- 164 (339)
||+.+ +. ......+ .|. ..|++++|+| ++++|++++.||.|++||++ +++....+..
T Consensus 91 wd~~~~~~~~~~~~~~~~-~h~-----~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~ 163 (437)
T 3gre_A 91 WNLKEIIVGEVYSSSLTY-DCS-----STVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK 163 (437)
T ss_dssp EEHHHHHTTCCCSCSEEE-ECS-----SCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred eECcccccCcccceeeec-cCC-----CCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEcc
Confidence 99977 33 1122233 366 8999999998 99999999999999999995 4443333222
Q ss_pred ---cCCceeEEEe--c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEE
Q 040307 165 ---HDREVYDISW--G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVV 238 (339)
Q Consensus 165 ---~~~~v~~~~~--~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i 238 (339)
+...+.++.+ + ++.+|++++.|+.|++||+++.+....+.. +.|...|.+++|+| ++++|++++.|+. |++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~-i~i 240 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDE-ECCVLILGTTRGI-IDI 240 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECT-TSCEEEEEETTSC-EEE
T ss_pred CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECC-CCCEEEEEcCCCe-EEE
Confidence 4456666664 3 588999999999999999999875554433 22567999999998 8999999999999 999
Q ss_pred EecCCCCCceEEEe-cCCCCeeEEEecc----CCCCeEEEEeCCCcEEEEEecCCCCCC---CCCC--------CC-Ccc
Q 040307 239 LDIRFPTNPVVVLS-KHEGSVNGISWAP----LYGRRLCSVADDSRALIWEVVGPGYRS---GNGG--------PS-GDV 301 (339)
Q Consensus 239 ~d~~~~~~~~~~~~-~~~~~v~~~~~~p----~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~--------~~-~~~ 301 (339)
||++. .+++..+. .|...|.+++|+| ++ .+|++++.||.|++||+....... .... +. ..+
T Consensus 241 wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 241 WDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp EETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred EEcCC-ccEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence 99997 66777775 7788999996654 56 599999999999999998765100 0000 00 000
Q ss_pred cceeeec--ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 302 EPELCYQ--SMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 302 ~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
......+ |...|++++|+ +++.|++++.|+.|++|++
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred ccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 0001122 77889999999 6677889999999999985
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=253.19 Aligned_cols=249 Identities=13% Similarity=0.208 Sum_probs=192.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc---------ceeEEEeecCCCc-------cCCCCEEEE
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR---------TELKSLLNSNKTS-------EFSSAITSF 129 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~---------~~~~~~~~~~~~~-------~~~~~i~~~ 129 (339)
..+.+.|.+++|+|++ .+||+|+ | .|+||++.+.+ ......+.+|..+ .....|+++
T Consensus 25 ~~~~~~V~~v~~s~~g-----~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 25 VAEADIISTVEFNHSG-----ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CCGGGSEEEEEECSSS-----SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccccCcEEEEEECCCC-----CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 4567899999999999 8999987 4 99999998754 2246667776410 001569999
Q ss_pred EEcCCCC--CEEEEEeCCCeEEEEECCCCeee---------------------------------------ee-eeccCC
Q 040307 130 DWAGFDT--RRVATCSVDTTCVIWDIDREILE---------------------------------------TQ-LVAHDR 167 (339)
Q Consensus 130 ~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~---------------------------------------~~-~~~~~~ 167 (339)
+|+| ++ .+|++++.|+.|++||+.+++.. .. ..+|..
T Consensus 100 ~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 100 RWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 9998 66 79999999999999998764431 12 357999
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEE-----eCCCCCCCeEEEEEecCCC-CeEEEEeeCCCeEEEEe
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY-----ENPVQDCPLLRLEWNKADP-RFMATVGMDSNKVVVLD 240 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~-~~l~~~~~d~~~i~i~d 240 (339)
.|.+++|+ ++++|+++ .|+.|++||++......... ....|...|.+++|+| ++ ++|++++.|+. |++||
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~-i~iwd 255 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT-IRLCD 255 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC-EEEEE
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe-EEEEE
Confidence 99999999 78899998 79999999999544333221 1234778999999999 65 99999999999 99999
Q ss_pred cCCCCC---ceEEEecCCC------------CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-
Q 040307 241 IRFPTN---PVVVLSKHEG------------SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE- 304 (339)
Q Consensus 241 ~~~~~~---~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~- 304 (339)
++.... .+..+..|.. .|.+++|+|++ .+|++++. +.|++||++... .+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~------------~~~~ 321 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMEN------------RPVE 321 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCS------------SCSC
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCc------------cccc
Confidence 987332 2678888876 89999999999 69999998 999999998733 122
Q ss_pred eeecccc---------------eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 305 LCYQSMA---------------EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 305 ~~~~~~~---------------~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
....|.. .+..++|+|++++|++++.|+.|++|++
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 2333432 1345999999999999999999999985
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=266.86 Aligned_cols=253 Identities=15% Similarity=0.212 Sum_probs=209.4
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC--CCCCCCCeE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS--EETLNPDIV 91 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l 91 (339)
..|.++|++++|+|+ +++|++|+ .||.|+||++......... .+ .+|.+.|.+++|+|+ + .+|
T Consensus 6 ~gH~~~V~~l~~s~d---g~~latg~----~dg~I~vwd~~~~~~~~~~--~l-~~h~~~V~~l~~s~~~~~-----~~l 70 (753)
T 3jro_A 6 NAHNELIHDAVLDYY---GKRLATCS----SDKTIKIFEVEGETHKLID--TL-TGHEGPVWRVDWAHPKFG-----TIL 70 (753)
T ss_dssp --CCCCEEEECCCSS---SCCEEEEE----TTTEEEEEEEETTEEEEEE--EE-CCCSSCEEEEEECCTTSC-----SEE
T ss_pred ccCcceeEEEEECCC---CCeEEEEE----CCCcEEEEecCCCCCccce--ec-cCCcCceEEEEecCCCCC-----CEE
Confidence 357899999999999 99999999 7999999988754433332 33 589999999999988 6 788
Q ss_pred EEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCe--eeeeeecc
Q 040307 92 ATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD--TRRVATCSVDTTCVIWDIDREI--LETQLVAH 165 (339)
Q Consensus 92 a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~ 165 (339)
++|+ | .|++||+.+++......+..|. ..|++++|+| + ++++++|+.||.|++||++++. ....+.+|
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-----~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRWSQIAVHAVHS-----ASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred EEEeCCCeEEEEECCCCcccccccccCCC-----CCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 8887 5 9999999998755777777887 8999999998 7 8999999999999999998773 34456789
Q ss_pred CCceeEEEecC--------------CcEEEEEeCCCcEEEEECCCCcce-eeEEeCCCCCCCeEEEEEecCC--CCeEEE
Q 040307 166 DREVYDISWGG--------------FNVFASVSGDCSVRVFDLRDKERS-TIIYENPVQDCPLLRLEWNKAD--PRFMAT 228 (339)
Q Consensus 166 ~~~v~~~~~~~--------------~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~--~~~l~~ 228 (339)
...|.+++|++ +.+|++++.||.|++||+++.... ........|...|.+++|+|+. +.+|++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 99999999995 789999999999999999987533 2222233478899999999933 899999
Q ss_pred EeeCCCeEEEEecCCCCC----ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 229 VGMDSNKVVVLDIRFPTN----PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 229 ~~~d~~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
++.|+. |++||++.... .......|...|++++|+|++ .+|++++.||.|++|++....
T Consensus 225 ~s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQDRT-CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSC-EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSSS
T ss_pred EecCCE-EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCCC
Confidence 999999 99999987432 233345578899999999999 599999999999999998543
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-34 Score=250.69 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=169.9
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|...|++|+|+|... .+||+|+ | .|+|||+.+++......+.+|. ..|++++|+|.++++|++|+.|
T Consensus 116 ~~~~~~V~~l~~~P~~~----~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~-----~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 116 APFDRRATSLAWHPTHP----STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG-----GSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp EECSSCEEEEEECSSCT----TCEEEEETTSCEEEECSSCCSCCEEECCCSSS-----CCCCEEEECSSCTTEEEEECSS
T ss_pred CCCCCCEEEEEEeCCCC----CEEEEEeCCCEEEEEECCCCCceeEEEccCCC-----CCEEEEEEeCCCCCEEEEEeCC
Confidence 57888999999999653 7999987 4 9999999887655556667787 8999999998778999999999
Q ss_pred CeEEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 146 TTCVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
|+|++||++++....... .+...+.+++|+ ++.+|++|+.||.|++||++.... . ....|...|.+++|+|..
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-~---~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL-W---NLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC-C---CSBCCSSCEEEEEECTTC
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee-E---EEecccceEEeeeecCCC
Confidence 999999998765433332 233457889999 789999999999999999976432 1 223477899999999965
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCC--ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTN--PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
..+|++++.|+. |++||++.... .+....+|...|++++|+|++ .+|++++.||.|+|||+....
T Consensus 263 ~~~~~s~s~d~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 263 DWFLATASVDQT-VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SSEEEEEETTSB-CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSS
T ss_pred ceEEEEecCcce-eeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCc
Confidence 668889999999 99999987432 223346789999999999999 699999999999999998876
No 106
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-33 Score=231.26 Aligned_cols=233 Identities=13% Similarity=0.117 Sum_probs=199.1
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|.+.|.+++| |++ .+|++++ | .|++||+.+.+ ....+..|. ..|.+++|+| ++++|++++.|
T Consensus 15 ~~h~~~v~~~~~-~~~-----~~l~s~~~dg~v~vw~~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d 80 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDD-----SKVASVSRDGTVRLWSKDDQW--LGTVVYTGQ-----GFLNSVCYDS-EKELLLFGGKD 80 (313)
T ss_dssp CCCSSCEEEEEE-EET-----TEEEEEETTSEEEEEEESSSE--EEEEEEECS-----SCEEEEEEET-TTTEEEEEETT
T ss_pred hCCCCCcEEEEe-cCC-----CEEEEEEcCCcEEEEECCCCE--EEEEeecCC-----ccEEEEEECC-CCCEEEEecCC
Confidence 689999999999 888 7888887 4 99999998876 677777777 8999999998 99999999999
Q ss_pred CeEEEEECCCC---eeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 146 TTCVIWDIDRE---ILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 146 ~~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
|.|++|++... +.+..+..|...|.+++|. ++++++++.|+.|++|| ..+ ....... |...+.+++|+|.+
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~-~~~~~~~--~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGS-LVYNLQA--HNASVWDAKVVSFS 154 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTE-EEEEEEC--CSSCEEEEEEEETT
T ss_pred CeEEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCc-EEEeccc--CCCceeEEEEccCC
Confidence 99999998654 4567778899999999995 78999999999999999 222 2233333 67899999999878
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
++++++++.++. |++||. ......+.. |...+.+++|+|++ . +++++.||.|++||++..+
T Consensus 155 ~~~l~~~~~d~~-i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~------------ 216 (313)
T 3odt_A 155 ENKFLTASADKT-IKLWQN---DKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD------------ 216 (313)
T ss_dssp TTEEEEEETTSC-EEEEET---TEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC------------
T ss_pred CCEEEEEECCCC-EEEEec---CceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh------------
Confidence 999999999999 999994 445667776 88999999999998 4 9999999999999999877
Q ss_pred cceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 302 EPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 302 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.......|...|++++|+|++ .+++++.|+.|++|++
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 217 VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEEC
Confidence 223455789999999999999 5899999999999985
No 107
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-33 Score=239.87 Aligned_cols=250 Identities=8% Similarity=0.040 Sum_probs=189.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeee-------ccccCCeEEEEecCCCCCcccceeeE----eecCCCCceEEEEcCCCC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSF-------LEDYSNKIELVNFNPETSDFSADNRL----IFDHPYTPTNIAFFPSEE 84 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~-------~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~ 84 (339)
+.+.|.+++++ +..+++|.. .+..|+.+++|+++............ ...+...+.+++|+||+
T Consensus 72 ~~~~v~s~~~~-----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg- 145 (365)
T 4h5i_A 72 NDDSPTAIDAS-----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG- 145 (365)
T ss_dssp TSCCCCEEEEE-----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-
T ss_pred CCCceEEEEeC-----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-
Confidence 34567776654 446766643 22358899999987765544332111 12345568899999999
Q ss_pred CCCCCeEEEe--C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 040307 85 TLNPDIVATS--G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET 160 (339)
Q Consensus 85 ~~~~~~la~~--~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 160 (339)
+++|++ + | +|+|||+++.+ ++..+. |. ..|.+++|+| ++++|++++.+ .+.+|+..+++.+.
T Consensus 146 ----~~la~as~~~d~~i~iwd~~~~~--~~~~~~-~~-----~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 146 ----TVAAIASSKVPAIMRIIDPSDLT--EKFEIE-TR-----GEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIA 211 (365)
T ss_dssp ----SCEEEEESCSSCEEEEEETTTTE--EEEEEE-CS-----SCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEE
T ss_pred ----CEEEEEECCCCCEEEEeECCCCc--EEEEeC-CC-----CceEEEEEcc-CCceEEeccce-eEEEEEeccCccee
Confidence 776543 3 4 89999999886 666665 44 6899999998 99999999855 56666666666443
Q ss_pred --eeeccCCceeEEEec-CCcEEEEEeCCC----cEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 161 --QLVAHDREVYDISWG-GFNVFASVSGDC----SVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 161 --~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
....|...|.+++|+ ++..+++++.|+ .+++||+....... .......|...|.+++|+| ++++||+|+.|
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D 290 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASND 290 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETT
T ss_pred eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCC
Confidence 345688899999999 899999999887 58889988765322 1222234678999999999 99999999999
Q ss_pred CCeEEEEecCCCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 233 SNKVVVLDIRFPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 233 ~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+. |+|||+++ .+++.. +.+|...|++++|+|++ ++|++|+.|++|+|||+....
T Consensus 291 ~~-V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 291 NS-IALVKLKD-LSMSKIFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp SC-EEEEETTT-TEEEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTTT
T ss_pred CE-EEEEECCC-CcEEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC
Confidence 99 99999987 566766 47899999999999999 699999999999999997544
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=6.7e-33 Score=241.65 Aligned_cols=288 Identities=6% Similarity=-0.016 Sum_probs=224.2
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
+.+..+.....+.+++|+|+ +.++++++ .++.|++|+.................|...|.+++|+|++
T Consensus 114 ~~~~~~~~~~~~~~~~~s~~---~~~~~~~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 181 (433)
T 3bws_A 114 RFISRFKTGFQPKSVRFIDN---TRLAIPLL----EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN----- 181 (433)
T ss_dssp EEEEEEECSSCBCCCEESSS---SEEEEEBT----TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-----
T ss_pred eEEEEEcCCCCceEEEEeCC---CeEEEEeC----CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-----
Confidence 45555666677889999998 88899888 6899999876643322111000113788899999999999
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEECCCCeeeeeeecc
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~ 165 (339)
.++++++ + .|++||+++++ ....+..|. ..+.+++|+| +++.++ +++.++.|++||+++++.+..+..
T Consensus 182 ~~~~s~~~d~~v~~~d~~~~~--~~~~~~~~~-----~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~- 252 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLKTLA--YKATVDLTG-----KWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDK- 252 (433)
T ss_dssp EEEEEEGGGTEEEEEETTTCC--EEEEEECSS-----SSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCC-
T ss_pred EEEEEECCCCEEEEEECCCce--EEEEEcCCC-----CCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecC-
Confidence 8888887 3 99999999876 667777766 7899999998 777775 555899999999999988877764
Q ss_pred CCceeEEEec-CCcEEEEEe--------CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC-eEEEEeeCCCe
Q 040307 166 DREVYDISWG-GFNVFASVS--------GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR-FMATVGMDSNK 235 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~d~~~ 235 (339)
...+.+++|+ +++.+++++ .|+.|++||+++++...... +...+..++|+| +++ ++++++.++.
T Consensus 253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~- 326 (433)
T 3bws_A 253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGN-TENKIYVSDMCCSK- 326 (433)
T ss_dssp CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECS-STTEEEEEETTTTE-
T ss_pred CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECC-CCCEEEEEecCCCE-
Confidence 4568999999 677888887 58899999999886544432 235788999998 665 5566677777
Q ss_pred EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC---------------CCcEEEEEecCCCCCCCCCCCCCc
Q 040307 236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD---------------DSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
|++||+.. .+.+..+. +...+.+++|+|++ ++|++++. ||.|++||+...+
T Consensus 327 v~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~----------- 392 (433)
T 3bws_A 327 IEVYDLKE-KKVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT----------- 392 (433)
T ss_dssp EEEEETTT-TEEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-----------
T ss_pred EEEEECCC-CcEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCc-----------
Confidence 99999986 55555555 67789999999999 57777775 5799999998876
Q ss_pred ccceeeecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307 301 VEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v 339 (339)
..........+.+++|+|+++.+++++ .|+.|++|++
T Consensus 393 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 393 --VKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp --EEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred --EEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 444444566799999999999888776 4999999985
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-33 Score=237.08 Aligned_cols=245 Identities=12% Similarity=0.080 Sum_probs=197.2
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEe
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCS 143 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~ 143 (339)
.+|.+.|.+++|+|++ .+|++++ + .|++|++.+.+ ......+..|. ..|++++|+| +++ +|++|+
T Consensus 8 ~~h~~~v~~~~~s~~~-----~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~~l~~~~ 76 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSK-----SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK-----HPLLCCNFID-NTDLQIYVGT 76 (342)
T ss_dssp SCCSSCEEEEEEEGGG-----TEEEEEETTSEEEEEEEETTTTEEEEEEEEECS-----SCEEEEEEEE-SSSEEEEEEE
T ss_pred cCCCCcEEEEEEcCCC-----CEEEEEcCCCeEEEEEeCCCCccccceeeeecC-----CceEEEEECC-CCCcEEEEEc
Confidence 4799999999999999 7888876 5 99999998875 12234455666 8999999998 899 999999
Q ss_pred CCCeEEEEEC-CCCeeeeeeec--cCCceeEEEecCCcEEEEEeCCCcEEEEECCC---------CcceeeEEeCCCCCC
Q 040307 144 VDTTCVIWDI-DREILETQLVA--HDREVYDISWGGFNVFASVSGDCSVRVFDLRD---------KERSTIIYENPVQDC 211 (339)
Q Consensus 144 ~d~~v~i~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~ 211 (339)
.||.|++||+ ++++. ..+.. |...|.+++|+++++|++++.|+.|++||+++ .+....+ .+..
T Consensus 77 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~ 151 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----KVKN 151 (342)
T ss_dssp TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----SSCC
T ss_pred CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEE----eeCC
Confidence 9999999999 77754 66778 99999999999888999999999999999986 4422221 1567
Q ss_pred CeEEEEEecCCCCeEEEEeeCCCeEEEEecCC-CCCc-eEEEecCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCC
Q 040307 212 PLLRLEWNKADPRFMATVGMDSNKVVVLDIRF-PTNP-VVVLSKHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 212 ~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~-~~~~-~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
.+.+++|+| ++ +++++.++. |++||++. .... ......|...+.+++|+| ++ .+|++++.||.|++|+++..
T Consensus 152 ~v~~~~~~~-~~--l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 152 KIFTMDTNS-SR--LIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CEEEEEECS-SE--EEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTT
T ss_pred ceEEEEecC-Cc--EEEEeCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCC
Confidence 899999997 44 889999998 99999987 4443 334556788999999999 98 69999999999999999886
Q ss_pred CCCCCCCCCCCcccceeeeccc---------ceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 289 GYRSGNGGPSGDVEPELCYQSM---------AEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.. .. ..........|. ..|.+++|+|++++|++++.|+.|++|++
T Consensus 227 ~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 227 GD-DY-----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CC-ST-----TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred Cc-cc-----ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 10 00 000122333443 48999999999999999999999999985
No 110
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.1e-33 Score=239.14 Aligned_cols=252 Identities=14% Similarity=0.155 Sum_probs=190.1
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+|...|.+++|+|++. ++|++|+ | .|++|++.+.+........+|. ..|.+++|+|.++++|++++.|
T Consensus 70 ~~h~~~v~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHP----TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG-----DAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp CCCSSCEEEEEECSSCT----TEEEEEEBTSCEEEEETTSTTCEEEECCCSTT-----CBEEEEEEETTEEEEEEEEETT
T ss_pred cCCCCCEEEEEECCCCC----CEEEEEcCCCeEEEEeCCCcccceeeecCCcC-----CceeEEEeCCCCCCEEEEEeCC
Confidence 58999999999999974 6888887 5 9999999988733333334576 8999999998567999999999
Q ss_pred CeEEEEECCCCeeeeeeec---cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307 146 TTCVIWDIDREILETQLVA---HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~---~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
+.|++||++. ..+..+.. |...|.+++|+ ++++|++++.|+.|++||++. + ....... |...|.+++|+|
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~-~~~~~~~--h~~~v~~~~~~~- 214 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-H-EIFKEKL--HKAKVTHAEFNP- 214 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-C-EEEEEEC--SSSCEEEEEECS-
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-C-EEEEecc--CCCcEEEEEECC-
Confidence 9999999986 44555543 34789999999 789999999999999999953 3 2222333 678999999999
Q ss_pred CCC-eEEEEeeCCCeEEEEecCCCC---CceEEEecCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCCCCCCC-CC
Q 040307 222 DPR-FMATVGMDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGPGYRSG-NG 295 (339)
Q Consensus 222 ~~~-~l~~~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~ 295 (339)
++. +|++++.|+. |++||++... .++..+ .|...|.+++|+| ++ .+|++++.|+.|++||+........ ..
T Consensus 215 ~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 215 RCDWLMATSSVDAT-VKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp SCTTEEEEEETTSE-EEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCCEEEEEeCCCE-EEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcccccccc
Confidence 666 9999999998 9999998632 334444 6999999999999 88 6999999999999999998761000 00
Q ss_pred C---CCCcccce-eeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 296 G---PSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 296 ~---~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
. ......+. ........+..++|+|++++ +++.|+.|++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA 337 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec
Confidence 0 00000000 01111244556777777765 7779999999985
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.7e-33 Score=240.35 Aligned_cols=249 Identities=15% Similarity=0.195 Sum_probs=201.7
Q ss_pred eccCCeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcc---cceeeEeecCCCCceEEEEcCCCCCCCCCe
Q 040307 15 MAQWPISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDF---SADNRLIFDHPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 15 ~~~~~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 90 (339)
.|..+|.+++|+| + +.+||+|+ .||.|+||++....... .....+ .+|...|.+++|+|++. .+
T Consensus 79 ~h~~~V~~~~~~p~~---~~~l~s~s----~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~----~~ 146 (402)
T 2aq5_A 79 GHTAPVLDIAWCPHN---DNVIASGS----EDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQ----NV 146 (402)
T ss_dssp CCSSCEEEEEECTTC---TTEEEEEE----TTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBT----TE
T ss_pred cCCCCEEEEEeCCCC---CCEEEEEe----CCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCC----CE
Confidence 4788999999999 7 99999999 79999999887653211 111123 68999999999999973 58
Q ss_pred EEEeC-C-cEEEEeecCCcceeEEEe--ecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-ecc
Q 040307 91 VATSG-D-SLRLWEIHDDRTELKSLL--NSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VAH 165 (339)
Q Consensus 91 la~~~-~-~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~ 165 (339)
|++++ | .|++||+.+++ ....+ ..|. ..|.+++|+| ++++|++++.|+.|++||+++++.+..+ ..|
T Consensus 147 l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 218 (402)
T 2aq5_A 147 LLSAGCDNVILVWDVGTGA--AVLTLGPDVHP-----DTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPH 218 (402)
T ss_dssp EEEEETTSCEEEEETTTTE--EEEEECTTTCC-----SCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred EEEEcCCCEEEEEECCCCC--ccEEEecCCCC-----CceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCC
Confidence 88876 5 99999999886 67777 6677 8999999998 9999999999999999999999988888 678
Q ss_pred CCc-eeEEEec-CCcEEEEE---eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE-EeeCCCeEEEE
Q 040307 166 DRE-VYDISWG-GFNVFASV---SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT-VGMDSNKVVVL 239 (339)
Q Consensus 166 ~~~-v~~~~~~-~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d~~~i~i~ 239 (339)
.+. +.++.|+ ++.+|+++ +.|+.|++||+++.+.+...... .+...+.+++|+| ++++|++ ++.|+. |++|
T Consensus 219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~g~~dg~-i~i~ 295 (402)
T 2aq5_A 219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDP-DTNIVYLCGKGDSS-IRYF 295 (402)
T ss_dssp CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEET-TTTEEEEEETTCSC-EEEE
T ss_pred CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcC-CCCEEEEEEcCCCe-EEEE
Confidence 765 8999999 78888888 78999999999987754443332 2456899999998 7777765 556888 9999
Q ss_pred ecCCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 240 DIRFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 240 d~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
|+......+..+..| ...|.+++|+|++ .++++ .++.+++|++....
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~-~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKR-GLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGG-GSCGG--GTEEEEEEEEETTE
T ss_pred EecCCCcceEeecccccCCcccceEEeccc-cccee--cceeEEEEEcCCCc
Confidence 998844335555554 5899999999998 46654 56799999998754
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=236.16 Aligned_cols=282 Identities=16% Similarity=0.237 Sum_probs=195.7
Q ss_pred ccCCeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 16 AQWPISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 16 ~~~~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
|..+|.+++|+| + +.+|++++ .|+.|++|++... .... ...+...+.++.|+|.+. +..+++++
T Consensus 98 ~~~~v~~~~~~~~~---~~~l~s~~----~d~~i~iwd~~~~--~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~ 162 (408)
T 4a11_B 98 HRYSVETVQWYPHD---TGMFTSSS----FDKTLKVWDTNTL--QTAD----VFNFEETVYSHHMSPVST--KHCLVAVG 162 (408)
T ss_dssp CSSCEEEEEECTTC---TTCEEEEE----TTSEEEEEETTTT--EEEE----EEECSSCEEEEEECSSCS--SCCEEEEE
T ss_pred CCCcEEEEEEccCC---CcEEEEEe----CCCeEEEeeCCCC--ccce----eccCCCceeeeEeecCCC--CCcEEEEE
Confidence 788999999999 5 78999999 7999999877643 3332 246788999999999652 11478777
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCe-eeeee--------
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREI-LETQL-------- 162 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~-~~~~~-------- 162 (339)
+ + .|++||+.+++ ....+..|. ..|.+++|+| ++. +|++++.||.|++||++++. .+..+
T Consensus 163 ~~~~~v~~~d~~~~~--~~~~~~~~~-----~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 163 TRGPKVQLCDLKSGS--CSHILQGHR-----QEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp ESSSSEEEEESSSSC--CCEEECCCC-----SCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred cCCCeEEEEeCCCcc--eeeeecCCC-----CcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 6 4 99999999886 677788887 8999999998 666 69999999999999998765 33333
Q ss_pred -------eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEEecCCCCeEEEEeeCC
Q 040307 163 -------VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEWNKADPRFMATVGMDS 233 (339)
Q Consensus 163 -------~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d~ 233 (339)
..|...|.+++|+ ++++|++++.|+.|++||+++.+......... ..........+.+..+..+++++.++
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 5688999999999 78999999999999999999887543322110 01111122233333566777888888
Q ss_pred CeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307 234 NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI 313 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 313 (339)
. |++||+.. .+++..+.+|...|.+++|+|++ .+|++++.||.|++||+...+ +........
T Consensus 315 ~-i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~-------------~~~~~~~~~-- 376 (408)
T 4a11_B 315 T-IAVYTVYS-GEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYE-------------PVPDDDETT-- 376 (408)
T ss_dssp E-EEEEETTT-CCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC--------------------------
T ss_pred E-EEEEECcC-CcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCC-------------ccCCCCceE--
Confidence 8 99999987 77889999999999999999999 699999999999999999987 222111111
Q ss_pred EEEEecCCCC-ceEEEecCCeEEEEe
Q 040307 314 NVVRWSPLEL-DWIAIAFVNKLQLLK 338 (339)
Q Consensus 314 ~~~~~~p~~~-~l~~~~~d~~v~~w~ 338 (339)
....+.|... .+.+.+.++.+++|.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 377 TKSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp --------------------------
T ss_pred eccccccccceeecccCccCceeecC
Confidence 1223344332 244566889999996
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-32 Score=237.79 Aligned_cols=244 Identities=13% Similarity=0.053 Sum_probs=194.6
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc-ceeEEEeecCCC------------------------------
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR-TELKSLLNSNKT------------------------------ 119 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~-~~~~~~~~~~~~------------------------------ 119 (339)
.++.+++|+|++ ++|+++.+ .|++||+.+++ ...+..+..+..
T Consensus 5 ~p~~~v~~s~dg-----~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDG-----SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSS-----SEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCC-----CEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 478999999999 77777766 99999998876 112223322110
Q ss_pred -------------------ccCCCCEEEEEEcCCCCCEE-EEEeCCCeEEEEECC--CCeeeeeee--ccCCceeEEEec
Q 040307 120 -------------------SEFSSAITSFDWAGFDTRRV-ATCSVDTTCVIWDID--REILETQLV--AHDREVYDISWG 175 (339)
Q Consensus 120 -------------------~~~~~~i~~~~~~~~~~~~l-~~~~~d~~v~i~d~~--~~~~~~~~~--~~~~~v~~~~~~ 175 (339)
..+...|++++|+| ++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp --------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence 11224799999998 88885 899999999999998 788777775 567889999999
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCccee-eEEeCCCCCCCeEEEEEecCC---CCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 176 -GFNVFASVSGDCSVRVFDLRDKERST-IIYENPVQDCPLLRLEWNKAD---PRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 176 -~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
++.+|++++.++.|++|++.+..... .......|...|.+++|+| + +++|++++.|+. |++||++. ...+..
T Consensus 159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~-i~vwd~~~-~~~~~~ 235 (450)
T 2vdu_B 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEH-IKISHYPQ-CFIVDK 235 (450)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSC-EEEEEESC-TTCEEE
T ss_pred CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCc-EEEEECCC-Cceeee
Confidence 78999999999999999998876432 1112223678999999999 6 889999999999 99999987 455555
Q ss_pred -EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee----------------------
Q 040307 251 -LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY---------------------- 307 (339)
Q Consensus 251 -~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------------- 307 (339)
+.+|...|.+++|+ ++ .+|++++.|+.|++||+..++ +....
T Consensus 236 ~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGK-------------NLSTFDYNSLIKPYLNDQHLAPPRFQN 300 (450)
T ss_dssp ECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCC-------------EEEEEECHHHHGGGCCTTSBC------
T ss_pred eecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCc-------------Eeeeecchhhhhhhhhhcccccccccc
Confidence 66899999999999 88 699999999999999998876 22111
Q ss_pred ----cccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307 308 ----QSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 308 ----~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v 339 (339)
.....|.+++|+|+++++++++ .|+.|++|++
T Consensus 301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 2235699999999999888888 8999999985
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=230.87 Aligned_cols=266 Identities=10% Similarity=0.018 Sum_probs=194.1
Q ss_pred EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEE
Q 040307 23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRL 100 (339)
Q Consensus 23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~i 100 (339)
..+.++ +.+|++|+ .||.|++|++......... . ...|.++.|+| . +++++ | +|++
T Consensus 42 ~~~~~d---~~~l~sg~----~Dg~v~iwd~~~~~~~~~~----~---~~~v~~~~~~~-------~-~~s~s~D~~i~~ 99 (343)
T 3lrv_A 42 KSMYYD---KWVCMCRC----EDGALHFTQLKDSKTITTI----T---TPNPRTGGEHP-------A-IISRGPCNRLLL 99 (343)
T ss_dssp SSSSEE---EEEEEEEE----ETTEEEEEEESSSSCEEEE----E---EECCCTTCCCC-------S-EEEECSTTEEEE
T ss_pred hhhcCC---CCEEEEEC----CCCcEEEEECCCCcEEEEE----e---cCCceeeeeCC-------c-eEEecCCCeEEE
Confidence 345567 88999999 7999999888754332222 1 35677777776 4 56665 5 8999
Q ss_pred EeecCCc-------ceeEEEee-cCCCccCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCcee
Q 040307 101 WEIHDDR-------TELKSLLN-SNKTSEFSSAITSFDWAGF-DTRRVATCSVDTTCVIWDIDREILETQLV-AHDREVY 170 (339)
Q Consensus 101 w~~~~~~-------~~~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v~ 170 (339)
|+..... ...+..+. .|. .+|.+++|+|. ++++|++++.||.|++||+++++...... .+...+.
T Consensus 100 w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 100 LYPGNQITILDSKTNKVLREIEVDSA-----NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS 174 (343)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCCS-----SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC
T ss_pred EEccCceEEeecCCcceeEEeecCCC-----CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE
Confidence 9765321 11233333 444 78999999962 67899999999999999999998766553 4556899
Q ss_pred EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 171 DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
+++|+ ++.+|++|+.|+.|++||+++++.....+.. .|..+|.+++|+| ++.+|++++ ++. |++||++.. +.+.
T Consensus 175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~-~g~~l~s~~-~~~-v~iwd~~~~-~~~~ 249 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFAD-NGYWMVVEC-DQT-VVCFDLRKD-VGTL 249 (343)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-CTTSCEEEEEECT-TSSEEEEEE-SSB-EEEEETTSS-TTCB
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-cCCCCEEEEEEeC-CCCEEEEEe-CCe-EEEEEcCCC-Ccce
Confidence 99999 7999999999999999999998865222222 2678999999998 899999999 446 999999984 3333
Q ss_pred EEe---cCCCCee--EEEeccCCCCeEEEEeC-CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC---
Q 040307 250 VLS---KHEGSVN--GISWAPLYGRRLCSVAD-DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP--- 320 (339)
Q Consensus 250 ~~~---~~~~~v~--~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p--- 320 (339)
.+. .|...+. +++|+|++ ++|++++. |+.++||++.... ..... .++..++|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~------------~~~~~----~~~~~~~~~~~~~ 312 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKT------------KNWTK----DEESALCLQSDTA 312 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTT------------CSEEE----EEEEECCC----C
T ss_pred eecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccc------------cceEe----cCceeEecCcccc
Confidence 333 2444444 59999999 69999888 9999999997765 11211 5678888988
Q ss_pred CCCceEEEecCCeEEEE
Q 040307 321 LELDWIAIAFVNKLQLL 337 (339)
Q Consensus 321 ~~~~l~~~~~d~~v~~w 337 (339)
+...+++++.|+.++++
T Consensus 313 ~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 313 DFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCCEEEEEEETTEEEEE
T ss_pred ccceeEEEecCCceEEE
Confidence 77778888888888775
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-31 Score=222.26 Aligned_cols=249 Identities=16% Similarity=0.252 Sum_probs=197.0
Q ss_pred CCceeeee---eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307 7 KKPGVHTY---MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE 83 (339)
Q Consensus 7 ~~~~~~~~---~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 83 (339)
+++.+..+ .|...|.+++|+|+ +++||+|+ .|+.|+||++... +... .+ .+|...+.++.+ ++
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~~~---~~~l~sgs----~Dg~v~iw~~~~~--~~~~--~~-~~h~~~~~~~~~--~~ 119 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWIKE---GNYLAVGT----SSAEVQLWDVQQQ--KRLR--NM-TSHSARVGSLSW--NS 119 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTT---SSEEEEEE----TTSEEEEEETTTT--EEEE--EE-ECCSSCEEEEEE--ET
T ss_pred CCCEEEEEEecCCCCeEEEEEECCC---CCEEEEEE----CCCcEEEeecCCc--eeEE--Ee-cCccceEEEeec--CC
Confidence 34444444 35678999999999 99999999 7999999876643 3332 23 578887776655 45
Q ss_pred CCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---
Q 040307 84 ETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL--- 158 (339)
Q Consensus 84 ~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--- 158 (339)
.++++++. .+++|+..... .....+.+|. ..+..+.+++ ++++|++++.|+.|++||+++++.
T Consensus 120 -----~~l~s~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~ 187 (318)
T 4ggc_A 120 -----YILSSGSRSGHIHHHDVRVAE-HHVATLSGHS-----QEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV 187 (318)
T ss_dssp -----TEEEEEETTSEEEEEETTSSS-CEEEEEECCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSC
T ss_pred -----CEEEEEecCCceEeeecCCCc-eeEEEEcCcc-----CceEEEEEcC-CCCEEEEEecCcceeEEECCCCccccc
Confidence 68888874 88999887764 3666778887 8999999998 999999999999999999987653
Q ss_pred -eeeeeccCCceeEEEec-C-CcEE--EEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--e
Q 040307 159 -ETQLVAHDREVYDISWG-G-FNVF--ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG--M 231 (339)
Q Consensus 159 -~~~~~~~~~~v~~~~~~-~-~~~l--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~ 231 (339)
......+...|.++.++ . .+.+ ++++.++.|++||.+......... +...+..+.|+| .+..+++++ .
T Consensus 188 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~-~~~~~~~~sg~~ 262 (318)
T 4ggc_A 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSP-HYKELISGHGFA 262 (318)
T ss_dssp CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEET-TTTEEEEEECTT
T ss_pred ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecc-cccceEEEEEcC
Confidence 33445677889999998 3 4443 456678999999999887544433 346899999998 666665544 6
Q ss_pred CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
|+. |++||+++ .+++.++.+|.+.|++++|+|++ .+|++|+.||+|+|||+....
T Consensus 263 d~~-i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 263 QNQ-LVIWKYPT-MAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TCC-EEEEETTT-CCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCCC
T ss_pred CCE-EEEEECCC-CcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence 787 99999987 77899999999999999999999 699999999999999997654
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.4e-32 Score=229.17 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=179.3
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE-EEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV-ATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d 145 (339)
..|...|.+++|+|++ .+||+|++ .++||+++..+ ....... ..+..+++.+ +++.+ ++++.|
T Consensus 16 ~~h~~~V~~v~fs~dg-----~~la~g~~~~~~iw~~~~~~--~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~d 80 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQ-----SCLILSTLKSFEIYNVHPVA--HIMSQEM-------RHLSKVRMLH-RTNYVAFVTGVK 80 (355)
T ss_dssp ---CCCCCEEEECTTS-----SEEEEECSSEEEEEEETTEE--EEEEEEC-------SCCCEEEECT-TSSEEEEECSST
T ss_pred ccCCCceEEEEECCCC-----CEEEEEcCCEEEEEecCCcc--eeeeeec-------CCeEEEEEcC-CCCEEEEEECCc
Confidence 5789999999999999 89999987 89999988764 3332222 3466778886 56655 677888
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCC-cceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDK-ERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
++|++||+.+++.+..+. +...|.++++++.. ++++ .|+.|++||+.+. +....+.. +...++++| .
T Consensus 81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~s~---~ 148 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR------FGGVCEFSN---G 148 (355)
T ss_dssp TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE------EEEEEEEET---T
T ss_pred cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc------CCceEEEEc---c
Confidence 999999999999888886 67799999998443 4443 3789999999987 43333221 334566665 5
Q ss_pred eEEE--EeeCCCeEEEEecCCCC--------------Cc-eEEEecCCCCeeEEEeccCCCCeEEEEeCCCc-EEEEEec
Q 040307 225 FMAT--VGMDSNKVVVLDIRFPT--------------NP-VVVLSKHEGSVNGISWAPLYGRRLCSVADDSR-ALIWEVV 286 (339)
Q Consensus 225 ~l~~--~~~d~~~i~i~d~~~~~--------------~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~iwd~~ 286 (339)
++++ |+.++. |++||++... .+ +..+.+|...|.+++|+|++ .+|++++.|++ |+|||+.
T Consensus 149 ~la~~sg~~~g~-v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 149 LLVYSNEFNLGQ-IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp EEEEEESSCTTC-EEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETT
T ss_pred EEEEeCCCcCcE-EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECC
Confidence 6666 577888 9999998643 13 78899999999999999999 69999999998 9999999
Q ss_pred CCCCCCCCCCCCCcccce-eee-c-ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 287 GPGYRSGNGGPSGDVEPE-LCY-Q-SMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~-~~~-~-~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+.+ +. ... + |...|++++|+|++++|++++.|++|++|++
T Consensus 227 ~~~-------------~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 227 DGV-------------LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp TCC-------------EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred CCc-------------EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 877 44 333 3 8999999999999999999999999999985
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-31 Score=233.49 Aligned_cols=232 Identities=15% Similarity=0.289 Sum_probs=200.0
Q ss_pred ecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 68 FDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..|...|.+++| ++ ++|++|+ + .|++||+.+++ ....+.+|. ..|.+++| ++++|++|+.|
T Consensus 130 ~~~~~~v~~~~~--d~-----~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~-----~~v~~l~~---~~~~l~sg~~d 192 (435)
T 1p22_A 130 SETSKGVYCLQY--DD-----QKIVSGLRDNTIKIWDKNTLE--CKRILTGHT-----GSVLCLQY---DERVIITGSSD 192 (435)
T ss_dssp CSSCCCEEEEEC--CS-----SEEEEEESSSCEEEEESSSCC--EEEEECCCS-----SCEEEEEC---CSSEEEEEETT
T ss_pred cCCCCcEEEEEE--CC-----CEEEEEeCCCeEEEEeCCCCe--EEEEEcCCC-----CcEEEEEE---CCCEEEEEcCC
Confidence 356778998887 56 7888876 4 99999999887 778888888 89999998 56899999999
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF 225 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 225 (339)
|.|++||+++++.+..+.+|...|.+++|+ ++.+++++.|+.|++||+++............|...+.+++| ++++
T Consensus 193 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~ 268 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKY 268 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTE
T ss_pred CeEEEEECCCCcEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCE
Confidence 999999999999999999999999999998 569999999999999999988755433333447889999999 5689
Q ss_pred EEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307 226 MATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305 (339)
Q Consensus 226 l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (339)
+++++.|+. |++||++. .+++..+.+|...|.+++|+ + .+|++|+.||.|++||+..+. ....
T Consensus 269 l~s~~~dg~-i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~------------~~~~ 331 (435)
T 1p22_A 269 IVSASGDRT-IKVWNTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA------------CLRV 331 (435)
T ss_dssp EEEEETTSE-EEEEETTT-CCEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC------------EEEE
T ss_pred EEEEeCCCe-EEEEECCc-CcEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC------------EEEE
Confidence 999999998 99999987 67888999999999999994 4 599999999999999999877 2335
Q ss_pred eecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...|...|.+++| ++..+++++.||.|++|++
T Consensus 332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 5578999999999 6668889999999999984
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=236.33 Aligned_cols=272 Identities=11% Similarity=0.033 Sum_probs=197.1
Q ss_pred eccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 15 MAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 15 ~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|+..|++++|+|+ | . ++.+.+|+ .+..... ...|...|.+++|||+| ..||++
T Consensus 50 gh~~~v~~V~FsPd---g------~-----~~~~~~~~--~~~~~~~-----~~~~~~~V~~vawSPdG-----~~LAs~ 103 (588)
T 2j04_A 50 CNSKNLFHVKEFPL---E------F-----ENKLDFEL--AQQNGLL-----NSQPVCYPRVCKPSPID-----DWMAVL 103 (588)
T ss_dssp SBGGGTEEEEEECC---C------C-----CCTTTTSC--CCSSCSS-----TTSCSCCEEEEEECSSS-----SCEEEE
T ss_pred CCCccEEEEEECCC---C------C-----cceEEEEe--CCCceEe-----ecCCCCcEEEEEECCCC-----CEEEEE
Confidence 57889999999999 7 3 66766633 2222222 24668899999999999 888888
Q ss_pred C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-------eeee---
Q 040307 95 G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-------ETQL--- 162 (339)
Q Consensus 95 ~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------~~~~--- 162 (339)
+ + .|++|+.+. ++..+. |........|.+++||| ++++|++|+.||+|++||+.++.. +.++
T Consensus 104 s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~ 177 (588)
T 2j04_A 104 SNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS 177 (588)
T ss_dssp ETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS
T ss_pred eCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc
Confidence 7 4 999999543 555566 54111113599999999 999999999999999999988752 4565
Q ss_pred -eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCccee--eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307 163 -VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERST--IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVL 239 (339)
Q Consensus 163 -~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~ 239 (339)
.+|.+.|.+++|+|+. +++++.|+.|++||+.+..... .... ..|...|.+++|+ ++.||+++ ++. |++|
T Consensus 178 ~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs---g~~LASa~-~~t-IkLW 250 (588)
T 2j04_A 178 DAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV---DYKVVLTC-PGY-VHKI 250 (588)
T ss_dssp CTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE---TTEEEEEC-SSE-EEEE
T ss_pred cccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE---CCEEEEEe-CCe-EEEE
Confidence 5677899999999544 8999999999999998877421 1221 1366899999998 48888887 576 9999
Q ss_pred ecCCCCCceEEEecCCCCeeEEEe--ccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC-----------Ccccceee
Q 040307 240 DIRFPTNPVVVLSKHEGSVNGISW--APLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS-----------GDVEPELC 306 (339)
Q Consensus 240 d~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------~~~~~~~~ 306 (339)
|+.. .+......+|...|..++| +|++ ..|+++++||+ ++|....-...|. .... ....++..
T Consensus 251 d~~~-~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd-~~l~a~~d~~v~lW~~~g~~l~~ 326 (588)
T 2j04_A 251 DLKN-YSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTAD-NIIAPYLEKKFKKWSTIWNEFNN 326 (588)
T ss_dssp ETTT-TEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECC-CSSHHHHHHHHHHTTTTTTSSSS
T ss_pred ECCC-CeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCC-ceEEEEcCCEEEEEECCCCceee
Confidence 9986 4332333389999999999 9999 69999999999 9999742110000 0000 00011223
Q ss_pred ecccceeEEEEecCCCCceEEEe
Q 040307 307 YQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 307 ~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
..+...|++++|+|+|+.+++++
T Consensus 327 ~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 327 YETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SCCEEEEEEEEECTTSSEEEEEE
T ss_pred eccceEEEEEEECCCCCEEEEEE
Confidence 33456799999999998666554
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.8e-32 Score=234.52 Aligned_cols=237 Identities=13% Similarity=0.080 Sum_probs=169.9
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC--------CCCCCCCCeEEEeC-C-cEEEE
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP--------SEETLNPDIVATSG-D-SLRLW 101 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--------~~~~~~~~~la~~~-~-~i~iw 101 (339)
+.+||+|+ .|++|+||+.+..............+|.+.|++++|+| ++ ++||+++ | +|+||
T Consensus 101 ~~~las~~----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-----~~las~s~D~tv~~W 171 (393)
T 4gq1_A 101 SLFLACVC----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-----QVIASVGDDCTLIIW 171 (393)
T ss_dssp EEEEEEEE----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-----EEEEEEETTSEEEEE
T ss_pred CCEEEEEe----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-----CEEEEEECCCeEEEE
Confidence 77899999 79999998877543322211111258999999999998 66 8999998 4 99999
Q ss_pred eecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee--------------------
Q 040307 102 EIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ-------------------- 161 (339)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-------------------- 161 (339)
|+.++. +...+..|. .++.+++|+|.+..+|++++.|++|++||+++++....
T Consensus 172 d~~~~~--~~~~~~~~~-----~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 172 RLTDEG--PILAGYPLS-----SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp EEETTE--EEEEEEECS-----SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred ECCCCc--eeeeecCCC-----CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 998876 666666776 89999999994446899999999999999987653221
Q ss_pred -----eeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---------------CCCCCeEEEEEe
Q 040307 162 -----LVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENP---------------VQDCPLLRLEWN 219 (339)
Q Consensus 162 -----~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~~~~~v~~~~~~ 219 (339)
..+|...+.++.|+ ++..|++++.|+.+++||+...+....+.... ..........|+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 13577788999997 68999999999999999998765332221100 001112233444
Q ss_pred cCC-CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 220 KAD-PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 220 p~~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
|.. +.++++|+.|+. |++||+.. +.+...+..|..+|++++|+|+| ++||+++.+| +.+|.+...
T Consensus 325 ~~~~~~~~~sgs~Dg~-V~lwd~~~-~~~~~~~~~~~~~V~svafspdG-~~LA~as~~G-v~lvrL~gf 390 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGL-IQLINTYE-KDSNSIPIQLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRLMGF 390 (393)
T ss_dssp SSCTTEEEEEETTTTE-EEEEETTC-TTCCEEEEECSSCEEEEEECTTS-SEEEEEESSE-EEEEEEGGG
T ss_pred cCCCCEEEEEECCCCE-EEEEECCC-CcEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEEeCc
Confidence 433 445666778888 99999987 55677778889999999999999 6999998665 677776543
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=222.41 Aligned_cols=242 Identities=12% Similarity=0.200 Sum_probs=191.8
Q ss_pred ecCCCCceEEEEcCC---CCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 68 FDHPYTPTNIAFFPS---EETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 68 ~~~~~~v~~l~~~~~---~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.+|.+.|++++|+|+ + .+|++++ + .|++|++.+........+.+|. ..|++++|+| ++++|+++
T Consensus 36 ~~h~~~v~~~~~~~~~~~g-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~~~-~~~~l~s~ 104 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPG-----NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT-----GPVLDVCWSD-DGSKVFTA 104 (368)
T ss_dssp SCCSSCEEEEEECCTTSSS-----EEEEEEETTSEEEEEEECTTSCEEEEEEEECS-----SCEEEEEECT-TSSEEEEE
T ss_pred cCCCCceEEEEEcCCCCCc-----eEEEEECCCCcEEEEEcCCCCceeEEEecccc-----CCEEEEEECc-CCCEEEEE
Confidence 689999999999999 5 7888877 4 9999999974433447788888 8999999998 99999999
Q ss_pred eCCCeEEEEECCCCeeeeeeeccCCceeEEEe--c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe
Q 040307 143 SVDTTCVIWDIDREILETQLVAHDREVYDISW--G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~--~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (339)
+.||.|++||+++++.+. +..|...|.+++| + ++++|++++.|+.|++||+++.+....+... ..+.++.+.
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~ 179 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP----ERCYCADVI 179 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS----SCEEEEEEE
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC----CCceEEEec
Confidence 999999999999988666 4569999999999 6 6789999999999999999998755544332 467777776
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCC---CeEEEEeCCCcEEEEEecCCCCCCCCC
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYG---RRLCSVADDSRALIWEVVGPGYRSGNG 295 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~ 295 (339)
+ ..+++++.++. +.+|+++.......... .+...+..+.+.++.. ..+++++.||.|++|++....
T Consensus 180 ~---~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~------ 249 (368)
T 3mmy_A 180 Y---PMAVVATAERG-LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN------ 249 (368)
T ss_dssp T---TEEEEEEGGGC-EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC------
T ss_pred C---CeeEEEeCCCc-EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC------
Confidence 4 57888888988 99999987443333332 2334566677666542 129999999999999998875
Q ss_pred CCCCc-ccceeeecccc------------eeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 296 GPSGD-VEPELCYQSMA------------EINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 296 ~~~~~-~~~~~~~~~~~------------~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
. ........|.. .|++++|+|++++|++++.|+.|++|++
T Consensus 250 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 250 ----PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp ----HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred ----ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 1 01123334443 7999999999999999999999999985
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=226.61 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=176.0
Q ss_pred EEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-
Q 040307 78 AFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID- 154 (339)
Q Consensus 78 ~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~- 154 (339)
.+.+++ .+|++|+ | .|++||+.+++ .+..+.. ..|.++.|+| + +++++.|++|++|+..
T Consensus 43 ~~~~d~-----~~l~sg~~Dg~v~iwd~~~~~--~~~~~~~-------~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 43 SMYYDK-----WVCMCRCEDGALHFTQLKDSK--TITTITT-------PNPRTGGEHP-A---IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp SSSEEE-----EEEEEEEETTEEEEEEESSSS--CEEEEEE-------ECCCTTCCCC-S---EEEECSTTEEEEEETTT
T ss_pred hhcCCC-----CEEEEECCCCcEEEEECCCCc--EEEEEec-------CCceeeeeCC-c---eEEecCCCeEEEEEccC
Confidence 344566 7888887 5 99999999887 5555552 5788888987 4 9999999999999765
Q ss_pred --------CCeeeeeee-ccCCceeEEEecC---CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 155 --------REILETQLV-AHDREVYDISWGG---FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 155 --------~~~~~~~~~-~~~~~v~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
+++.+..+. .|...|.+++|++ +++|++++.|+.|++||+++++....... .+...+.+++|+| +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~~i~~~~~~p-d 181 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--KSDVEYSSGVLHK-D 181 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC--CSSCCCCEEEECT-T
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec--CCCCceEEEEECC-C
Confidence 444344443 5668899999985 67999999999999999998875333222 2456799999998 9
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
+.+|++|+.|+. |++||++........+.. |...|.+++|+|++ .+|++++ |+.|++||++... ..
T Consensus 182 g~~lasg~~dg~-i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~----------~~ 248 (343)
T 3lrv_A 182 SLLLALYSPDGI-LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDV----------GT 248 (343)
T ss_dssp SCEEEEECTTSC-EEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSST----------TC
T ss_pred CCEEEEEcCCCE-EEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCC----------cc
Confidence 999999999999 999999985444377888 99999999999999 6999999 5599999999876 00
Q ss_pred ccee-eeccccee--EEEEecCCCCceEEEec-CCeEEEEeC
Q 040307 302 EPEL-CYQSMAEI--NVVRWSPLELDWIAIAF-VNKLQLLKV 339 (339)
Q Consensus 302 ~~~~-~~~~~~~i--~~~~~~p~~~~l~~~~~-d~~v~~w~v 339 (339)
..+. ...|...+ .+++|+|+++++++++. |+.+++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 0111 11133333 46999999998888887 999999963
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=4.3e-30 Score=209.70 Aligned_cols=281 Identities=10% Similarity=0.096 Sum_probs=190.8
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-CC-c
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-GD-S 97 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-~~-~ 97 (339)
+.++-|-...-....+++++ ...|++|+.... ...+..... ..|+.+|..+.|.|+.. .++..+ ++ .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-----~~~v~lw~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~----~~~~~~~~~~~ 110 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-----EDVVSLWKALDA-WQWEKLYTW-HFAEVPVLQIVPVPDVY----NLVCVALGNLE 110 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-----SSEEEEEEESSS-SBEEEEEEE-ECCSSCEEEECCCTTCC----SCEEEEECSSS
T ss_pred EeeeeeccCCCCccEEEEec-----cceEEEcccCCC-ccceeeEEE-eccCceeEEEEEcCccc----ceeeeeecccc
Confidence 44555555411123667777 899999887663 444443355 67889999999999885 454444 33 2
Q ss_pred E-EEEee----cCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe--CCCeEEEEEC-CCCeeeeeeeccCCce
Q 040307 98 L-RLWEI----HDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS--VDTTCVIWDI-DREILETQLVAHDREV 169 (339)
Q Consensus 98 i-~iw~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~v~i~d~-~~~~~~~~~~~~~~~v 169 (339)
+ .++.+ ++........-.+|. ..|..+ + +++++.+++ .|+.|++|++ .+++.+..+..|...+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~-----~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v 181 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI-----KAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE 181 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE-----EEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred ccceEEEEECCCccccccEEEeCCCe-----EEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence 2 22222 211112222223443 445544 3 677777644 6999999999 5588888888999999
Q ss_pred eEEEec----CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE------------EEEeeCC
Q 040307 170 YDISWG----GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM------------ATVGMDS 233 (339)
Q Consensus 170 ~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l------------~~~~~d~ 233 (339)
+.++|+ ++.+|++++.|++|+|||+++++....+.....+...+.+++|+| ++.++ ++|+.|+
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCE
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCc
Confidence 988888 358999999999999999999986666543322345678889999 78776 5577788
Q ss_pred CeEEEEecCCCCCceEEE-----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eee
Q 040307 234 NKVVVLDIRFPTNPVVVL-----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCY 307 (339)
Q Consensus 234 ~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~ 307 (339)
. |++||..+ ++.+..+ .+|...+.+..++ + .++++++.|++|+|||+.+++ .. .+.
T Consensus 261 t-IklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk-------------~l~tL~ 322 (356)
T 2w18_A 261 Q-LIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ-------------CTALLP 322 (356)
T ss_dssp E-EEEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS-------------EEEEEC
T ss_pred E-EEEEECCC-CEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc-------------EEEEec
Confidence 7 99999986 5544443 3565555444444 5 589999999999999999987 44 344
Q ss_pred cccceeE-EEEecCCCCceEEEecCCeEEEEeC
Q 040307 308 QSMAEIN-VVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 308 ~~~~~i~-~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+|...+. .++|+|+|++|++++.|++|+||++
T Consensus 323 gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 323 PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 6766554 6999999999999999999999984
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.1e-29 Score=218.33 Aligned_cols=261 Identities=11% Similarity=0.096 Sum_probs=199.5
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeE-EEeC-C-cEEEEeecCCcc
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV-ATSG-D-SLRLWEIHDDRT 108 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-a~~~-~-~i~iw~~~~~~~ 108 (339)
+.++++++ .++.|++|++.. ++... ...+...+.+++|+|++ +.+ ++++ + .|++||+.+++
T Consensus 2 ~~l~vs~~----~d~~v~v~d~~~--~~~~~----~~~~~~~~~~~~~s~dg-----~~l~~~~~~d~~i~v~d~~~~~- 65 (391)
T 1l0q_A 2 TFAYIANS----ESDNISVIDVTS--NKVTA----TIPVGSNPMGAVISPDG-----TKVYVANAHSNDVSIIDTATNN- 65 (391)
T ss_dssp EEEEEEET----TTTEEEEEETTT--TEEEE----EEECSSSEEEEEECTTS-----SEEEEEEGGGTEEEEEETTTTE-
T ss_pred CEEEEEcC----CCCEEEEEECCC--CeEEE----EeecCCCcceEEECCCC-----CEEEEECCCCCeEEEEECCCCe-
Confidence 44677777 799999977653 33332 23444568999999999 654 6664 4 99999998886
Q ss_pred eeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEE-EEEeC
Q 040307 109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVF-ASVSG 185 (339)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~ 185 (339)
....+..+ ..+.+++|+| ++++|+ +++.++.|++||+.+++.+..+.. ...+.+++|+ +++.+ ++++.
T Consensus 66 -~~~~~~~~------~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 66 -VIATVPAG------SSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp -EEEEEECS------SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETT
T ss_pred -EEEEEECC------CCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCC
Confidence 66666654 4899999998 888775 455679999999999988887764 4578999999 67766 78888
Q ss_pred CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE-EEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEec
Q 040307 186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM-ATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWA 264 (339)
Q Consensus 186 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 264 (339)
++.|++||+++++....+.. ...+..++|+| +++.+ ++++.++. |++||++. .+.+..+. +...+.+++|+
T Consensus 137 ~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~-dg~~l~~~~~~~~~-v~~~d~~~-~~~~~~~~-~~~~~~~~~~~ 208 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVSV----GRSPKGIAVTP-DGTKVYVANFDSMS-ISVIDTVT-NSVIDTVK-VEAAPSGIAVN 208 (391)
T ss_dssp TTEEEEEETTTTEEEEEEEC----CSSEEEEEECT-TSSEEEEEETTTTE-EEEEETTT-TEEEEEEE-CSSEEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEec----CCCcceEEECC-CCCEEEEEeCCCCE-EEEEECCC-CeEEEEEe-cCCCccceEEC
Confidence 99999999998875444332 24679999998 77766 56666777 99999987 44455554 56689999999
Q ss_pred cCCCCeEEEEe---CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307 265 PLYGRRLCSVA---DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV 339 (339)
Q Consensus 265 p~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v 339 (339)
|++ .+|++++ .++.|++||+...+ +.........+.+++|+|+++.++ +++.|+.|++|++
T Consensus 209 ~~g-~~l~~~~~~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 209 PEG-TKAYVTNVDKYFNTVSMIDTGTNK-------------ITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp TTS-SEEEEEEECSSCCEEEEEETTTTE-------------EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCC-CEEEEEecCcCCCcEEEEECCCCe-------------EEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 999 4777776 68999999998876 443343344689999999998775 5578999999985
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.8e-30 Score=224.25 Aligned_cols=285 Identities=9% Similarity=0.025 Sum_probs=214.6
Q ss_pred ccCCeeEEE---eeecCCcccEEEEeeec----------cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC
Q 040307 16 AQWPISTVA---WSVRHDRKSRLAVGSFL----------EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS 82 (339)
Q Consensus 16 ~~~~v~~i~---~sp~~~~~~~la~g~~~----------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 82 (339)
....+..++ |+|+ +..+++.+.. +..++.+.||.++..+...... ........+.+++|+|+
T Consensus 59 ~~~g~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~s~~ 133 (433)
T 3bws_A 59 KNIALVEMAIPVYKDE---KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFI--SRFKTGFQPKSVRFIDN 133 (433)
T ss_dssp TTEEEEEEEEECCCTT---CCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEE--EEEECSSCBCCCEESSS
T ss_pred cCCccEEEEEeeccCC---CcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEE--EEEcCCCCceEEEEeCC
Confidence 345678888 8988 6655543320 1134445677777655433331 12344556779999996
Q ss_pred CCCCCCCeEEEeCC--cEEEEeecCCcceeEE-----EeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 040307 83 EETLNPDIVATSGD--SLRLWEIHDDRTELKS-----LLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR 155 (339)
Q Consensus 83 ~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 155 (339)
+ .+++++++ .|++||+.+++ ... .+.+|. ..|.+++|+| ++.++++++.|+.|++||+++
T Consensus 134 ~-----~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 134 T-----RLAIPLLEDEGMDVLDINSGQ--TVRLSPPEKYKKKL-----GFVETISIPE-HNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp S-----EEEEEBTTSSSEEEEETTTCC--EEEECCCHHHHTTC-----CEEEEEEEGG-GTEEEEEEGGGTEEEEEETTT
T ss_pred C-----eEEEEeCCCCeEEEEECCCCe--EeeecCcccccccC-----CceeEEEEcC-CCEEEEEECCCCEEEEEECCC
Confidence 6 77777764 89999999887 444 233454 7899999987 899999999999999999999
Q ss_pred CeeeeeeeccCCceeEEEec-CCcEEE-EEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee--
Q 040307 156 EILETQLVAHDREVYDISWG-GFNVFA-SVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-- 231 (339)
Q Consensus 156 ~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-- 231 (339)
++.+..+..|...+.+++|+ +++.++ +++.|+.|++||+++++....+. ....+.+++|+| +++++++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~ 275 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIGLPRGLLLSK-DGKELYIAQFSA 275 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----CCSEEEEEEECT-TSSEEEEEEEES
T ss_pred ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----CCCCceEEEEcC-CCCEEEEEECCC
Confidence 99888888899999999999 666664 55589999999999876433322 234689999998 8888888874
Q ss_pred ------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307 232 ------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305 (339)
Q Consensus 232 ------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (339)
++. |++||++. .+.+..+ .|...+.+++|+|+++.++++++.|+.|++||+...+ ...
T Consensus 276 ~~~~~~dg~-i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-------------~~~ 339 (433)
T 3bws_A 276 SNQESGGGR-LGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-------------VQK 339 (433)
T ss_dssp CTTCSCCEE-EEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-------------EEE
T ss_pred CccccCCCe-EEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-------------EEE
Confidence 566 99999986 4444443 4566899999999996566777899999999998766 444
Q ss_pred eecccceeEEEEecCCCCceEEEec---------------CCeEEEEeC
Q 040307 306 CYQSMAEINVVRWSPLELDWIAIAF---------------VNKLQLLKV 339 (339)
Q Consensus 306 ~~~~~~~i~~~~~~p~~~~l~~~~~---------------d~~v~~w~v 339 (339)
...+...+.+++|+|+++.+++++. ||.|++|++
T Consensus 340 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 340 SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 5567788999999999988877765 569999984
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=1.7e-28 Score=210.88 Aligned_cols=247 Identities=11% Similarity=0.080 Sum_probs=192.4
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEE-EEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRL-AVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~l-a~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
+++.+..+.+...+.+++|+|+ +++| ++++ .++.|++|+.. +++... ...+...+.+++|+|++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~----~d~~i~v~d~~--~~~~~~----~~~~~~~v~~~~~spdg-- 85 (391)
T 1l0q_A 21 SNKVTATIPVGSNPMGAVISPD---GTKVYVANA----HSNDVSIIDTA--TNNVIA----TVPAGSSPQGVAVSPDG-- 85 (391)
T ss_dssp TTEEEEEEECSSSEEEEEECTT---SSEEEEEEG----GGTEEEEEETT--TTEEEE----EEECSSSEEEEEECTTS--
T ss_pred CCeEEEEeecCCCcceEEECCC---CCEEEEECC----CCCeEEEEECC--CCeEEE----EEECCCCccceEECCCC--
Confidence 4566677777778999999999 8876 5665 69999997764 334333 23444589999999999
Q ss_pred CCCCeE-EEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeee
Q 040307 86 LNPDIV-ATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV-ATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 86 ~~~~~l-a~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
+.| ++++ + .|++||+.+++ ....+..+ ..+.+++|+| +++.| ++++.++.|++||+.+++.+..
T Consensus 86 ---~~l~~~~~~~~~v~v~d~~~~~--~~~~~~~~------~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 86 ---KQVYVTNMASSTLSVIDTTSNT--VAGTVKTG------KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp ---SEEEEEETTTTEEEEEETTTTE--EEEEEECS------SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---CEEEEEECCCCEEEEEECCCCe--EEEEEeCC------CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 655 5554 3 99999999886 55566554 4689999998 88866 7888899999999999998888
Q ss_pred eeccCCceeEEEec-CCcEE-EEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe---eCCCeE
Q 040307 162 LVAHDREVYDISWG-GFNVF-ASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG---MDSNKV 236 (339)
Q Consensus 162 ~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~d~~~i 236 (339)
+..+ ..+.+++|+ +++.+ ++++.++.|++||+++.+....+. +...+.+++|+| ++++|++++ .++. |
T Consensus 154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~~~-v 226 (391)
T 1l0q_A 154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNP-EGTKAYVTNVDKYFNT-V 226 (391)
T ss_dssp EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECT-TSSEEEEEEECSSCCE-E
T ss_pred EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECC-CCCEEEEEecCcCCCc-E
Confidence 8655 457999999 66666 677889999999999887544432 235789999998 888888887 4666 9
Q ss_pred EEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 237 VVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 237 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
++||++. .+++..+..|. .+.+++|+|++..++++++.|+.|++||+...+
T Consensus 227 ~~~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 227 SMIDTGT-NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEEETTT-TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEEECCC-CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 9999987 55677777654 578999999995344777899999999998765
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=7.9e-29 Score=202.29 Aligned_cols=253 Identities=12% Similarity=0.105 Sum_probs=174.6
Q ss_pred ceeeeee-ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCC
Q 040307 9 PGVHTYM-AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLN 87 (339)
Q Consensus 9 ~~~~~~~-~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 87 (339)
+.+++.. ++.+|..+.+.|| ..-|++.....-+.+.|+..-+..++..+... ....+|...|..+ +++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~-l~s~g~~~~v~~l---~~g---- 145 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPD---VYNLVCVALGNLEIREIRALFCSSDDESEKQV-LLKSGNIKAVLGL---TKR---- 145 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTT---CCSCEEEEECSSSEEEEEEECC------CCEE-EEEEEEEEEEEEE---TTT----
T ss_pred eeeEEEeccCceeEEEEEcCc---ccceeeeeeccccccceEEEEECCCccccccE-EEeCCCeEEEEec---CCC----
Confidence 5566665 4569999999998 43333333211133344443344443222221 1123455556554 566
Q ss_pred CCeEEEeC---C-cEEEEeecC-CcceeEEEeecCCCccCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCeeee
Q 040307 88 PDIVATSG---D-SLRLWEIHD-DRTELKSLLNSNKTSEFSSAITSFDWAGF--DTRRVATCSVDTTCVIWDIDREILET 160 (339)
Q Consensus 88 ~~~la~~~---~-~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~ 160 (339)
+++.+++ + .|++|++.. ++ .+..+..|. ..++.++|+|. ++.+|++++.|++|+|||++++++++
T Consensus 146 -~lv~ss~~g~d~~V~~~~~s~dG~--~~~s~~~~~-----~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~ 217 (356)
T 2w18_A 146 -RLVSSSGTLSDQQVEVMTFAEDGG--GKENQFLMP-----PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLK 217 (356)
T ss_dssp -EEEEEESSSTTCEEEEEEECTTSC--EEEEEEECC-----CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred -cEEEecccCCCCcEEEEEECCCCc--eeeeeccCC-----CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEE
Confidence 7888754 5 999999954 54 666777777 77888888863 67999999999999999999999999
Q ss_pred eeeccC---CceeEEEec-CCcEE------------EEEeCCCcEEEEECCCCcceeeEEe--CCCCCCCeEEEEEecCC
Q 040307 161 QLVAHD---REVYDISWG-GFNVF------------ASVSGDCSVRVFDLRDKERSTIIYE--NPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 161 ~~~~~~---~~v~~~~~~-~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~ 222 (339)
++.+|. ..+.+++|+ ++.++ ++|+.|++|++||..+++....+.. ...|...+.+..+ +
T Consensus 218 tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---s 294 (356)
T 2w18_A 218 KMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---K 294 (356)
T ss_dssp EEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---E
T ss_pred EEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---C
Confidence 997654 357777899 67665 6688899999999998875443321 1234444544444 3
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCee-EEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVN-GISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
+.++++++.|++ |+|||+.+ ++.+.++.+|...+. .++|+|++ ++|++|+.|++|+|||+.
T Consensus 295 g~~lASgS~DgT-IkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 295 DHCAAAILTSGT-IAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp TTEEEEEETTSC-EEEEETTT-CSEEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEEC
T ss_pred CCEEEEEcCCCc-EEEEECCC-CcEEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecCC
Confidence 788999999999 99999998 778899999987665 58999999 699999999999999963
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=9.5e-28 Score=207.55 Aligned_cols=283 Identities=13% Similarity=0.098 Sum_probs=203.9
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCC----eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCC-----------
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSN----KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPS----------- 82 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----------- 82 (339)
..+...+|++. ..+++++|+.....+| .++|||....+++......+ ..|...+..+++++.
T Consensus 63 ~~~~~~~w~~~--g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 63 QEVQPAAWSAL--GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY-KVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp GGCCHHHHHTT--TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cCcCHHHHHhc--CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE-EcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 46777888888 2356768764323467 89998872122333221133 577778888877751
Q ss_pred ---CCCCCCCeEEEeC-------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC---eEE
Q 040307 83 ---EETLNPDIVATSG-------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT---TCV 149 (339)
Q Consensus 83 ---~~~~~~~~la~~~-------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~v~ 149 (339)
+. +++.++. ..|++||++.. ....+..|. ..+.+++|+| +++.|++++.++ .|+
T Consensus 140 ~~~~~----~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~-----~~v~~~~~Sp-dg~~la~~s~~~~~~~i~ 206 (415)
T 2hqs_A 140 GAFRT----RIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRSP-----QPLMSPAWSP-DGSKLAYVTFESGRSALV 206 (415)
T ss_dssp CCTTC----EEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEES-----SCEEEEEECT-TSSEEEEEECTTSSCEEE
T ss_pred CcCCC----EEEEEEecCCCCccceEEEEcCCCC---CCEEEeCCC-----CcceeeEEcC-CCCEEEEEEecCCCcEEE
Confidence 31 4444432 28999999764 345566666 7899999999 999999999885 999
Q ss_pred EEECCCCeeeeeeeccCCceeEEEec-CCcEEE-EEeCCCc--EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307 150 IWDIDREILETQLVAHDREVYDISWG-GFNVFA-SVSGDCS--VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF 225 (339)
Q Consensus 150 i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 225 (339)
+||+++++.. .+..|...+.+++|+ +++.|+ +++.++. |++||+++++.. . . ..+...+.+++|+| +++.
T Consensus 207 ~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~-l--~~~~~~~~~~~~sp-dg~~ 280 (415)
T 2hqs_A 207 IQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q-V--TDGRSNNTEPTWFP-DSQN 280 (415)
T ss_dssp EEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E-C--CCCSSCEEEEEECT-TSSE
T ss_pred EEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e-C--cCCCCcccceEECC-CCCE
Confidence 9999988765 456788899999999 788777 6666655 999999887632 2 2 22557899999999 8888
Q ss_pred EEEEeeC-CC-eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCC---CcEEEEEecCCCCCCCCCCCCCc
Q 040307 226 MATVGMD-SN-KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADD---SRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 226 l~~~~~d-~~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
|++++.+ +. .|++||+.. ++ ...+..+...+.+++|+|+| ++|++++.+ ..|++||+....
T Consensus 281 l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~----------- 346 (415)
T 2hqs_A 281 LAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG----------- 346 (415)
T ss_dssp EEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC-----------
T ss_pred EEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC-----------
Confidence 8887764 32 377778875 33 45566677889999999999 577777654 589999998876
Q ss_pred ccceeeecccceeEEEEecCCCCceEEEecCC---eEEEEeC
Q 040307 301 VEPELCYQSMAEINVVRWSPLELDWIAIAFVN---KLQLLKV 339 (339)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~---~v~~w~v 339 (339)
......+. .+.+++|+|+|+.|+.++.++ .|++|++
T Consensus 347 --~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 347 --VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp --EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred --EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 33333443 899999999999888877666 6888864
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=8e-26 Score=201.36 Aligned_cols=301 Identities=9% Similarity=0.023 Sum_probs=218.6
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC----C
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP----S 82 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~ 82 (339)
+++.+.++.....+..++|+|+ +++|++++ .++.|.+|+++..+..... . ..+...+..++|+| +
T Consensus 168 t~~~~~~i~~g~~~~~v~~spd---g~~l~v~~----~d~~V~v~D~~~~t~~~~~--~--i~~g~~p~~va~sp~~~~d 236 (543)
T 1nir_A 168 SKKIVKVIDTGYAVHISRMSAS---GRYLLVIG----RDARIDMIDLWAKEPTKVA--E--IKIGIEARSVESSKFKGYE 236 (543)
T ss_dssp TCCEEEEEECSTTEEEEEECTT---SCEEEEEE----TTSEEEEEETTSSSCEEEE--E--EECCSEEEEEEECCSTTCT
T ss_pred CceEEEEEecCcccceEEECCC---CCEEEEEC----CCCeEEEEECcCCCCcEEE--E--EecCCCcceEEeCCCcCCC
Confidence 4556666665555899999999 99999999 6899999888433444433 2 34566789999999 9
Q ss_pred CCCCCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCCC--c----cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 040307 83 EETLNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNKT--S----EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI 153 (339)
Q Consensus 83 ~~~~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~--~----~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~ 153 (339)
+ ++|++++ + +|.+||..+.+ ++..+..+.. . .....+..+.++|....++++...++.|.+||.
T Consensus 237 g-----~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~ 309 (543)
T 1nir_A 237 D-----RYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 309 (543)
T ss_dssp T-----TEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred C-----CEEEEEEccCCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence 9 7777765 4 99999998877 5555543210 0 001368899999855567777888999999999
Q ss_pred CCCeeee--eeeccCCceeEEEec-CCcEEEEE-eCCCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEEecCCCCeEEE
Q 040307 154 DREILET--QLVAHDREVYDISWG-GFNVFASV-SGDCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 154 ~~~~~~~--~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~ 228 (339)
.+.+.+. .+ .+...+.++.|+ ++++|+++ ..+++|.+||+.+++....+.... .|......+ ++|..+.++++
T Consensus 310 ~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s 387 (543)
T 1nir_A 310 KDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST 387 (543)
T ss_dssp TTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred cCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence 8866443 44 356678899999 77766655 468999999999987555443221 133333333 46745777777
Q ss_pred Ee-eCCCeEEEEecCCC------CCceEEEecCCCCeeEEEeccCCCCeEEEEe-------CCCcEEEEEecCCCCCCCC
Q 040307 229 VG-MDSNKVVVLDIRFP------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-------DDSRALIWEVVGPGYRSGN 294 (339)
Q Consensus 229 ~~-~d~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~ 294 (339)
+. .++. |.+||+... .+.+.++..|...+..++++|++ +.|++++ .+++|.+||+.+.+
T Consensus 388 ~~~~d~~-V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~----- 460 (543)
T 1nir_A 388 SHLGDGS-ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLD----- 460 (543)
T ss_dssp EBSSSSE-EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTT-----
T ss_pred ccCCCce-EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCC-----
Confidence 65 4566 999999762 46788999998889999999999 5888887 26799999999887
Q ss_pred CCCCCcc-ccee------eecccceeEEEEecCCCCceEEEe-----cCCeEEEEeC
Q 040307 295 GGPSGDV-EPEL------CYQSMAEINVVRWSPLELDWIAIA-----FVNKLQLLKV 339 (339)
Q Consensus 295 ~~~~~~~-~~~~------~~~~~~~i~~~~~~p~~~~l~~~~-----~d~~v~~w~v 339 (339)
.. +.+. +..+...+..+.|+|+|+.++.+. .++.|.||+.
T Consensus 461 -----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 461 -----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp -----SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred -----CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 11 1110 124567899999999999877553 3799999974
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=1.3e-25 Score=189.20 Aligned_cols=267 Identities=12% Similarity=0.079 Sum_probs=181.6
Q ss_pred cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C--cEEEEeec--CCcceeEEEeecCC
Q 040307 44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D--SLRLWEIH--DDRTELKSLLNSNK 118 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~--~i~iw~~~--~~~~~~~~~~~~~~ 118 (339)
.++.|++|+++.. +.... .....+...+.+++|+|++ ++|++++ + .|.+|+++ +++...+..+..+
T Consensus 13 ~~~~v~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~spdg-----~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 83 (343)
T 1ri6_A 13 ESQQIHVWNLNHE-GALTL--TQVVDVPGQVQPMVVSPDK-----RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP- 83 (343)
T ss_dssp GGTEEEEEEECTT-SCEEE--EEEEECSSCCCCEEECTTS-----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred CCCeEEEEEECCC-CcEEE--eeeEecCCCCceEEECCCC-----CEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence 6999999998752 32222 1225677889999999999 6555554 3 99999998 5554444455443
Q ss_pred CccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECC---CCeeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEE
Q 040307 119 TSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDID---REILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVF 192 (339)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~---~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~ 192 (339)
..+..++|+| ++++|++++. ++.|.+||+. ..+....+.. ...+.+++|+ +++.+++++ .++.|.+|
T Consensus 84 -----~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 84 -----GSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp -----SCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred -----CCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence 3678999998 8887766654 8899999994 3344444443 3458899999 677777776 89999999
Q ss_pred ECCC-Ccceee---EEeCCCCCCCeEEEEEecCCCCeEEEEe-eCCCeEEEEecCCC-CCc--eEEEec----C--CCCe
Q 040307 193 DLRD-KERSTI---IYENPVQDCPLLRLEWNKADPRFMATVG-MDSNKVVVLDIRFP-TNP--VVVLSK----H--EGSV 258 (339)
Q Consensus 193 d~~~-~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~~i~i~d~~~~-~~~--~~~~~~----~--~~~v 258 (339)
|+.. ++.... .... .....+..++|+| +++++++++ .++. |.+||+... +.. ...... + ...+
T Consensus 157 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p-dg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTT-VEGAGPRHMVFHP-NEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWA 233 (343)
T ss_dssp EECTTSCEEEEEEEEEEC-STTCCEEEEEECT-TSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred EecCCCceeeeccccccc-CCCCCcceEEECC-CCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCc
Confidence 9987 432211 1121 1235788999998 788666555 5666 999999642 222 222221 1 2356
Q ss_pred eEEEeccCCCCeEE-EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe-cCCeEEE
Q 040307 259 NGISWAPLYGRRLC-SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQL 336 (339)
Q Consensus 259 ~~~~~~p~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~ 336 (339)
..++|+|++. +|+ ++..++.|.+||+.... ..............+..++|+|+++.+++++ .++.+.+
T Consensus 234 ~~i~~s~dg~-~l~v~~~~~~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v 303 (343)
T 1ri6_A 234 ADIHITPDGR-HLYACDRTASLITVFSVSEDG---------SVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV 303 (343)
T ss_dssp EEEEECTTSS-EEEEEETTTTEEEEEEECTTS---------CCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred cceEECCCCC-EEEEEecCCCEEEEEEEcCCC---------CceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEE
Confidence 6899999995 555 56689999999998422 0012222233333488999999999888777 6899999
Q ss_pred EeC
Q 040307 337 LKV 339 (339)
Q Consensus 337 w~v 339 (339)
|++
T Consensus 304 ~~~ 306 (343)
T 1ri6_A 304 YEI 306 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 953
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=6.7e-25 Score=185.72 Aligned_cols=288 Identities=9% Similarity=0.036 Sum_probs=206.5
Q ss_pred eeeeeeccCCeeEEEeeecCCcccEEEEeeecc---ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307 10 GVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLE---DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 10 ~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
.+........+..++|+|+ +++|++++..+ ..++.|.+|+ ..+.+... . ......+..++|+|++
T Consensus 33 ~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~~~~~~~v~~~d--~~~~~~~~--~--~~~~~~~~~~~~s~dg--- 100 (353)
T 3vgz_A 33 EMLRKAVGKGAYEMAYSQQ---ENALWLATSQSRKLDKGGVVYRLD--PVTLEVTQ--A--IHNDLKPFGATINNTT--- 100 (353)
T ss_dssp CEEEEEEESSEEEEEEETT---TTEEEEEECCCTTTEESEEEEEEC--TTTCCEEE--E--EEESSCCCSEEEETTT---
T ss_pred hhhhhhhccCccceEECCC---CCEEEEEcCCCcCCCCCccEEEEc--CCCCeEEE--E--EecCCCcceEEECCCC---
Confidence 3455566778999999999 98888877310 0156788855 44444443 2 2334568899999999
Q ss_pred CCC-eEEEeC-C-cEEEEeecCCcceeEEEeecCCCcc----CCCCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCe
Q 040307 87 NPD-IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSE----FSSAITSFDWAGFDTRRVATCS--VDTTCVIWDIDREI 157 (339)
Q Consensus 87 ~~~-~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~ 157 (339)
+ ++++.. + .|.+||..+++ ....+..+.... ....+.+++|+| +++.+++++ .++.|.+||+++++
T Consensus 101 --~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 101 --QTLWFGNTVNSAVTAIDAKTGE--VKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp --TEEEEEETTTTEEEEEETTTCC--EEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTE
T ss_pred --CEEEEEecCCCEEEEEeCCCCe--eEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCc
Confidence 5 555555 3 99999999887 555555432100 001268899998 888777665 47899999999999
Q ss_pred eeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC-CCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307 158 LETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP-VQDCPLLRLEWNKADPRFMATVGMDSNK 235 (339)
Q Consensus 158 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d~~~ 235 (339)
....+..+...+.+++|+ +++.+++++.++.|.+||+.+.+....+.... .+...+..++|+| +++.+++++.+...
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAE 254 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSE
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCE
Confidence 888876566668899999 78899999999999999999887555444321 2345678899998 77777776665334
Q ss_pred EEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEE
Q 040307 236 VVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV 315 (339)
Q Consensus 236 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 315 (339)
|.+||... .+.+..+.... ...++|+|++..++++...++.|.+||+.+.+ ..........+.+
T Consensus 255 v~~~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~~ 318 (353)
T 3vgz_A 255 VLVVDTRN-GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK-------------VVKTFDTPTHPNS 318 (353)
T ss_dssp EEEEETTT-CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTE-------------EEEEEECCSEEEE
T ss_pred EEEEECCC-CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCe-------------EEEEEecCCCCCe
Confidence 99999987 55566666433 36799999995345555578999999998876 4444445567899
Q ss_pred EEecCCCCceEEEecC
Q 040307 316 VRWSPLELDWIAIAFV 331 (339)
Q Consensus 316 ~~~~p~~~~l~~~~~d 331 (339)
++|+|+++.++.+..+
T Consensus 319 ~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred EEEcCCCCEEEEEEcc
Confidence 9999999977665543
No 131
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.95 E-value=3.4e-25 Score=187.31 Aligned_cols=282 Identities=11% Similarity=0.087 Sum_probs=190.9
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcc
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRT 108 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~ 108 (339)
+.+++|++....++.|.+|.++..++.+... ....+...+..++|+|++ ++++++. + .|.+|++.+++.
T Consensus 3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~--~~~~~~~~p~~~a~spdg-----~l~~~~~~~~~~~v~~~~~~~g~~ 75 (347)
T 3hfq_A 3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTND--GLLAATQNPTYLALSAKD-----CLYSVDKEDDEGGIAAWQIDGQTA 75 (347)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTTEEEEE--EEEEECSCCCCEEECTTC-----EEEEEEEETTEEEEEEEEEETTEE
T ss_pred cEEEEEeccCCCCCCEEEEEEcCCCCeEEEe--eeeeccCCcceEEEccCC-----eEEEEEecCCCceEEEEEecCCcE
Confidence 4677776544457789999999877766542 123455678899999999 7665553 3 999999987765
Q ss_pred eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCC-Ce--eeeeeec---------cCCceeEEEec
Q 040307 109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDR-EI--LETQLVA---------HDREVYDISWG 175 (339)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~-~~--~~~~~~~---------~~~~v~~~~~~ 175 (339)
+.+..+..+. ..+..++|+| ++++|++++ .++.|.+|++.. +. .+..+.. ....+.+++|+
T Consensus 76 ~~~~~~~~~~-----~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 76 HKLNTVVAPG-----TPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT 149 (347)
T ss_dssp EEEEEEEEES-----CCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred EEeeeeecCC-----CCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence 4555544444 6788999998 999888887 689999999963 22 2333321 11247889999
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCcceeeEEe-CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc---eEE
Q 040307 176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYE-NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP---VVV 250 (339)
Q Consensus 176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~---~~~ 250 (339)
+++++++...++.|++||+........... .......+..++|+| +++++++++.....+.+|++...... +..
T Consensus 150 pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 150 PDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGI 228 (347)
T ss_dssp TTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence 677666666788999999983322222111 111234678899998 88877665544434999998752221 222
Q ss_pred EecCC------CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCC
Q 040307 251 LSKHE------GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLEL 323 (339)
Q Consensus 251 ~~~~~------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~ 323 (339)
+.... ..+..++|+|+|..++++...++.|.+|++.... ..... ....+...+..++|+|+++
T Consensus 229 ~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g----------~~~~~~~~~~~~~~~~~~~~spdg~ 298 (347)
T 3hfq_A 229 VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG----------HLTLIQQISTEGDFPRDFDLDPTEA 298 (347)
T ss_dssp EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG----------CEEEEEEEECSSSCCCEEEECTTSS
T ss_pred eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC----------cEEEeEEEecCCCCcCeEEECCCCC
Confidence 32222 3488899999994334666678999999997432 01122 2223455689999999999
Q ss_pred ceEEEec-CCeEEEEe
Q 040307 324 DWIAIAF-VNKLQLLK 338 (339)
Q Consensus 324 ~l~~~~~-d~~v~~w~ 338 (339)
+|++++. ++.+.+|+
T Consensus 299 ~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 299 FVVVVNQNTDNATLYA 314 (347)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCcEEEEE
Confidence 8877764 58999995
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=3.1e-26 Score=212.79 Aligned_cols=279 Identities=11% Similarity=0.034 Sum_probs=203.0
Q ss_pred cCCeeEEEeeecCCcccEEEEeeecccc-CC-----eEEEEecCCCCCcccceeeEee-cCC------------------
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDY-SN-----KIELVNFNPETSDFSADNRLIF-DHP------------------ 71 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~-~~-----~i~i~~~~~~~~~~~~~~~~~~-~~~------------------ 71 (339)
...+.+++|||| |++|++++ . ++ .|.+|+.+. ++... .... .+.
T Consensus 36 ~~~~~~~~~Spd---G~~la~~~----~~d~~~~~~~i~~~d~~~--g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPD---GSRVTFLR----GKDSDRNQLDLWSYDIGS--GQTRL--LVDSKVVLPGTETLSDEEKARRERQR 104 (741)
T ss_dssp CCCCEEEEECTT---SSEEEEEE----CCSSCTTEEEEEEEETTT--CCEEE--EECGGGTC------------------
T ss_pred CCCCCCceEecC---CCEEEEEe----ccCCCCcccEEEEEECCC--CceeE--ccchhhcccccccccchhhhhhhhhh
Confidence 456999999999 99999998 5 66 788866554 33322 1111 111
Q ss_pred ----CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCC---cceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe
Q 040307 72 ----YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDD---RTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS 143 (339)
Q Consensus 72 ----~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 143 (339)
..|.+++|+||+ +.|+++++ .|++||+.++ +. ..+..+. ..+..++|+| ++++|++++
T Consensus 105 ~~~~~~v~~~~~SpDg-----~~l~~~~~~~i~~~d~~~~~~~~~---~~l~~~~-----~~~~~~~~SP-DG~~la~~~ 170 (741)
T 2ecf_A 105 IAAMTGIVDYQWSPDA-----QRLLFPLGGELYLYDLKQEGKAAV---RQLTHGE-----GFATDAKLSP-KGGFVSFIR 170 (741)
T ss_dssp --CCEESCCCEECTTS-----SEEEEEETTEEEEEESSSCSTTSC---CBCCCSS-----SCEEEEEECT-TSSEEEEEE
T ss_pred hccccCcceeEECCCC-----CEEEEEeCCcEEEEECCCCCcceE---EEcccCC-----cccccccCCC-CCCEEEEEe
Confidence 238899999999 88888776 9999999887 42 2344454 6799999999 999999987
Q ss_pred CCCeEEEEECCCCeeeeeeeccCCc----------------eeEEEec-CCcEEEEEeCCC-------------------
Q 040307 144 VDTTCVIWDIDREILETQLVAHDRE----------------VYDISWG-GFNVFASVSGDC------------------- 187 (339)
Q Consensus 144 ~d~~v~i~d~~~~~~~~~~~~~~~~----------------v~~~~~~-~~~~l~~~~~d~------------------- 187 (339)
++.|++||+.+++.......+... +..++|+ ++++|++++.|+
T Consensus 171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 469999999988765544433332 4789999 789999887765
Q ss_pred --------------cEEEEECCC-CcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-----CCCeEEEEecCCCCCc
Q 040307 188 --------------SVRVFDLRD-KERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-----DSNKVVVLDIRFPTNP 247 (339)
Q Consensus 188 --------------~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----d~~~i~i~d~~~~~~~ 247 (339)
.|++||+.+ ++.... .....+...+..++| | +++.|++++. +.. |++||+.+ ++.
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~-i~~~d~~~-g~~ 324 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWI-DLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLD-LVEVTLAS-NQQ 324 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEE-CCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEE-EEEEETTT-CCE
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEe-cCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEE-EEEEECCC-Cce
Confidence 788999988 664332 221235567899999 9 8888887765 234 99999987 455
Q ss_pred eEEEecCCC----CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEE-EecCCC
Q 040307 248 VVVLSKHEG----SVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVV-RWSPLE 322 (339)
Q Consensus 248 ~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~p~~ 322 (339)
...+..+.. .+..++|+|+| +++++++.||.++||.+.... ....+..+...|..+ .|+|++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~------------~~~~l~~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 325 RVLAHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKG------------KAAALTHGNWSVDELLAVDEKA 391 (741)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSS------------CEEESCCSSSCEEEEEEEETTT
T ss_pred EEEEEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCC------------CeeeeeecceEEEeEeEEeCCC
Confidence 555554443 45689999999 599999999999999887554 123344566678887 599999
Q ss_pred CceEEEe-cCC--eEEEEeC
Q 040307 323 LDWIAIA-FVN--KLQLLKV 339 (339)
Q Consensus 323 ~~l~~~~-~d~--~v~~w~v 339 (339)
+.++..+ .++ .++||++
T Consensus 392 ~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 392 GLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp TEEEEEECSSCTTCBEEEEE
T ss_pred CEEEEEEeCCCCceEEEEEE
Confidence 8776544 455 7899874
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2.4e-25 Score=192.50 Aligned_cols=248 Identities=14% Similarity=0.119 Sum_probs=184.5
Q ss_pred ccEEEEeeeccccC---CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C----cEEEEee
Q 040307 32 KSRLAVGSFLEDYS---NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D----SLRLWEI 103 (339)
Q Consensus 32 ~~~la~g~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~----~i~iw~~ 103 (339)
+..+++++... .+ +.|++|+++. .... .+ ..|...+.+++|+|++ +.|++++ + .|++||+
T Consensus 143 ~~~l~~~s~~~-~~~~~~~i~i~d~~g--~~~~---~l-~~~~~~v~~~~~Spdg-----~~la~~s~~~~~~~i~~~d~ 210 (415)
T 2hqs_A 143 RTRIAYVVQTN-GGQFPYELRVSDYDG--YNQF---VV-HRSPQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTL 210 (415)
T ss_dssp TCEEEEEEECS-SSSCCEEEEEEETTS--CSCE---EE-EEESSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEET
T ss_pred CCEEEEEEecC-CCCccceEEEEcCCC--CCCE---EE-eCCCCcceeeEEcCCC-----CEEEEEEecCCCcEEEEEEC
Confidence 44566665210 12 7999988763 2222 22 5788899999999999 7777765 2 8999999
Q ss_pred cCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCe--EEEEECCCCeeeeeeeccCCceeEEEec-CCcE
Q 040307 104 HDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTT--CVIWDIDREILETQLVAHDREVYDISWG-GFNV 179 (339)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~--v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 179 (339)
.+++ .. .+..+. ..+.+++|+| +++.|+ +++.++. |++||+++++. ..+..|...+.+++|+ +++.
T Consensus 211 ~tg~--~~-~l~~~~-----~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 280 (415)
T 2hqs_A 211 ANGA--VR-QVASFP-----RHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQN 280 (415)
T ss_dssp TTCC--EE-EEECCS-----SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSE
T ss_pred CCCc--EE-EeecCC-----CcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCE
Confidence 9886 32 455555 7899999999 898777 6665554 99999988765 5666788899999999 7888
Q ss_pred EEEEeC-CC--cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCCCCCceEEEecC
Q 040307 180 FASVSG-DC--SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRFPTNPVVVLSKH 254 (339)
Q Consensus 180 l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~~~~~~~~~~~~ 254 (339)
|++++. ++ .|++||+.+++.... . .+...+.+++|+| ++++|++++.+. ..|++||+.. ++ ...+..+
T Consensus 281 l~~~s~~~g~~~i~~~d~~~~~~~~l--~--~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~-~~-~~~l~~~ 353 (415)
T 2hqs_A 281 LAFTSDQAGRPQVYKVNINGGAPQRI--T--WEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLSST 353 (415)
T ss_dssp EEEEECTTSSCEEEEEETTSSCCEEC--C--CSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTT-CC-EEECCCS
T ss_pred EEEEECCCCCcEEEEEECCCCCEEEE--e--cCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCC-CC-EEEecCC
Confidence 888776 44 677779887763222 1 1345788999998 899998887752 2499999986 33 3556655
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCC---cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDS---RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL 323 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 323 (339)
. .+.+++|+|++ ++|++++.++ .|++||+.... ...+..|.+.|.+++|+|...
T Consensus 354 ~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~~-------------~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 354 F-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRF-------------KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp S-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCC-------------EEECCCSSSEEEEEEECCCCC
T ss_pred C-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCCc-------------EEEeeCCCCCCcCCccccccc
Confidence 4 89999999999 5888877666 79999987655 456667889999999999754
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=4e-26 Score=188.13 Aligned_cols=253 Identities=11% Similarity=0.095 Sum_probs=183.3
Q ss_pred cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecC-CcceeEEEeecCCCcc
Q 040307 44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHD-DRTELKSLLNSNKTSE 121 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~-~~~~~~~~~~~~~~~~ 121 (339)
.++.|++|+... ++... ...|...|.+++|+|++ ++|+++++ .|++||+.+ ++ .......+.
T Consensus 20 ~~~~i~~~d~~~--~~~~~----~~~~~~~v~~~~~spdg-----~~l~~~~~~~i~~~d~~~~~~--~~~~~~~~~--- 83 (297)
T 2ojh_A 20 MRSSIEIFNIRT--RKMRV----VWQTPELFEAPNWSPDG-----KYLLLNSEGLLYRLSLAGDPS--PEKVDTGFA--- 83 (297)
T ss_dssp CCEEEEEEETTT--TEEEE----EEEESSCCEEEEECTTS-----SEEEEEETTEEEEEESSSCCS--CEECCCTTC---
T ss_pred cceeEEEEeCCC--Cceee----eccCCcceEeeEECCCC-----CEEEEEcCCeEEEEeCCCCCC--ceEeccccc---
Confidence 689999977653 33332 25678899999999999 88888877 999999998 76 444444431
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeC--CC--eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEE-EEeCCCcEEEEECC
Q 040307 122 FSSAITSFDWAGFDTRRVATCSV--DT--TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFA-SVSGDCSVRVFDLR 195 (339)
Q Consensus 122 ~~~~i~~~~~~~~~~~~l~~~~~--d~--~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~d~~i~i~d~~ 195 (339)
...+.+++|+| ++++|++++. ++ .|..+++.+++ ...+..+ ..+..++|+ +++.|+ +++.++.+++|++.
T Consensus 84 -~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~ 159 (297)
T 2ojh_A 84 -TICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD 159 (297)
T ss_dssp -CCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred -cccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEE
Confidence 15678999998 9999999983 34 45555555554 3444433 358899999 677666 78889999999865
Q ss_pred CCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe-eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEE
Q 040307 196 DKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG-MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSV 274 (339)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 274 (339)
.......... .+...+.+++|+| ++++|++++ .++. +++|++......+..+..|...+..++|+|++ ++|+++
T Consensus 160 ~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~ 234 (297)
T 2ojh_A 160 IDSGVETRLT--HGEGRNDGPDYSP-DGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-DKVVFV 234 (297)
T ss_dssp TTTCCEEECC--CSSSCEEEEEECT-TSSEEEEEECTTSS-CEEEEEETTSSCEEECCCCSEEEEEEEECTTS-SEEEEE
T ss_pred CCCCcceEcc--cCCCccccceECC-CCCEEEEEecCCCC-ccEEEECCCCCCcEEEecCCcccCCeEECCCC-CEEEEE
Confidence 3322222222 2457899999998 888777666 4777 99999875456677888888889999999999 577777
Q ss_pred eCC-----------CcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCC
Q 040307 275 ADD-----------SRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVN 332 (339)
Q Consensus 275 ~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~ 332 (339)
+.+ +.|.+||+...+ ...+ ....|...+..++|+|+++.|++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~-----------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGN-----------VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCS-----------CEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCCCC-----------ceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 755 569999998766 1112 2336778899999999999888776543
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=6e-25 Score=203.05 Aligned_cols=283 Identities=13% Similarity=0.116 Sum_probs=197.8
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD- 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~- 96 (339)
..|.+++|||+ +.++++ . ++.|++|++.. ++... ...+...+.+++|+|++ +.||.+.+
T Consensus 82 ~~v~~~~~spd---~~~~~~-~-----~~~i~~~d~~~--~~~~~----l~~~~~~~~~~~~SpdG-----~~la~~~~~ 141 (706)
T 2z3z_A 82 FPSFRTLDAGR---GLVVLF-T-----QGGLVGFDMLA--RKVTY----LFDTNEETASLDFSPVG-----DRVAYVRNH 141 (706)
T ss_dssp CCCEEEEETTT---TEEEEE-E-----TTEEEEEETTT--TEEEE----EECCTTCCTTCEECTTS-----SEEEEEETT
T ss_pred cCceeEEECCC---CeEEEE-E-----CCEEEEEECCC--CceEE----ccCCcccccCCcCCCCC-----CEEEEEECC
Confidence 57999999999 655444 5 69999977653 33332 24567789999999999 78888776
Q ss_pred cEEEEeecC-----CcceeEEEeecCCCc---------cCCCCEEEEEEcCCCCCEEEEEe-------------------
Q 040307 97 SLRLWEIHD-----DRTELKSLLNSNKTS---------EFSSAITSFDWAGFDTRRVATCS------------------- 143 (339)
Q Consensus 97 ~i~iw~~~~-----~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l~~~~------------------- 143 (339)
.|++|++.+ ++ .......+... +....+.++.|+| ++++|++++
T Consensus 142 ~i~v~~~~~~~~~~g~--~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~ 218 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSR--AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEA 218 (706)
T ss_dssp EEEEEECBCTTSCCCC--CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred eEEEEecCcccccCCC--cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCC
Confidence 999999988 65 33322222200 0001257899999 999999987
Q ss_pred --------------CCCeEEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCC-----cEEEEECCCCccee
Q 040307 144 --------------VDTTCVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDC-----SVRVFDLRDKERST 201 (339)
Q Consensus 144 --------------~d~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~-----~i~i~d~~~~~~~~ 201 (339)
.+..|++||+.+++...... .|...+.+++|+ +++.|++++.++ .|++||+.+++...
T Consensus 219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~ 298 (706)
T 2z3z_A 219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR 298 (706)
T ss_dssp EEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE
T ss_pred ceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee
Confidence 44689999999887544432 466779999999 788888887775 89999999884333
Q ss_pred eEEeCCCCC---CCeEEEEEec-CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeE-EEeccCCCCeEEEEeC
Q 040307 202 IIYENPVQD---CPLLRLEWNK-ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNG-ISWAPLYGRRLCSVAD 276 (339)
Q Consensus 202 ~~~~~~~~~---~~v~~~~~~p-~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~ 276 (339)
.+.... +. ..+..++|+| .+++++++++.++. ++||++...+..+..+..+...+.. ++|+|++..++++++.
T Consensus 299 ~~~~~~-~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 299 TLFVET-DKHYVEPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEEEE-CSSCCCCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEEEcc-CCCeECccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 333211 11 1246789997 26678888888887 8999887445667778778778877 7999999534444555
Q ss_pred CC--cEEEEEe--cCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC----CeEEEEeC
Q 040307 277 DS--RALIWEV--VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV----NKLQLLKV 339 (339)
Q Consensus 277 dg--~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d----~~v~~w~v 339 (339)
++ .+.||.+ .... .....+...+.+++|+|++++++.++.+ +.|++|++
T Consensus 377 ~~~~~~~l~~~d~~~~~--------------~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGGK--------------TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp SCTTCBEEEEEETTCCC--------------CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred CCCceEEEEEEEcCCCC--------------ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 54 3455544 4433 2222356678999999999987765433 45899874
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.8e-24 Score=192.67 Aligned_cols=278 Identities=12% Similarity=0.076 Sum_probs=200.3
Q ss_pred EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEE
Q 040307 24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLW 101 (339)
Q Consensus 24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw 101 (339)
+|+|+ +.+++++. .++.|.+||.. +++... .+..++. +..++|+|++ ++|++++ + .|++|
T Consensus 144 ~~~p~---~~~~vs~~----~d~~V~v~D~~--t~~~~~--~i~~g~~--~~~v~~spdg-----~~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLDLP---NLFSVTLR----DAGQIALVDGD--SKKIVK--VIDTGYA--VHISRMSASG-----RYLLVIGRDARIDMI 205 (543)
T ss_dssp CCCGG---GEEEEEEG----GGTEEEEEETT--TCCEEE--EEECSTT--EEEEEECTTS-----CEEEEEETTSEEEEE
T ss_pred ccCCC---CEEEEEEc----CCCeEEEEECC--CceEEE--EEecCcc--cceEEECCCC-----CEEEEECCCCeEEEE
Confidence 48898 88888888 79999997654 444443 3322333 8999999999 7777766 4 99999
Q ss_pred ee--cCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCCEEEEEeC-CCeEEEEECCCCeeeeeeec----------c
Q 040307 102 EI--HDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTRRVATCSV-DTTCVIWDIDREILETQLVA----------H 165 (339)
Q Consensus 102 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~----------~ 165 (339)
|+ .+.+ .+..+... ..+..++|+|. +++++++++. +++|.+||..+++++..+.. |
T Consensus 206 D~~~~t~~--~~~~i~~g------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 206 DLWAKEPT--KVAEIKIG------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp ETTSSSCE--EEEEEECC------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred ECcCCCCc--EEEEEecC------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence 99 6654 66666643 46789999961 6788888874 89999999999998887754 2
Q ss_pred C-CceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEec
Q 040307 166 D-REVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDI 241 (339)
Q Consensus 166 ~-~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~ 241 (339)
. ..+..+.++ + ..++++...++.|.+||+.+.+........ +...+..++|+| +++++++++. ++. |.+||+
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~sp-dg~~l~va~~~~~~-v~v~D~ 353 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDS-SHRYFMTAANNSNK-VAVIDS 353 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECT-TSCEEEEEEGGGTE-EEEEET
T ss_pred cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceECC-CCCEEEEEecCCCe-EEEEEC
Confidence 2 268889999 3 556777888999999999887644321111 245678899999 8887766654 566 999999
Q ss_pred CCCCCceEEEec----CCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEE
Q 040307 242 RFPTNPVVVLSK----HEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINV 315 (339)
Q Consensus 242 ~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~ 315 (339)
.+ ++.+..+.. |.+....+ ++|++..+++++. .|++|.+||+..... + ....+.+ .+..|...+..
T Consensus 354 ~t-g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~-~-----~~~~~~v~~l~~~g~~~~~ 425 (543)
T 1nir_A 354 KD-RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH-P-----QYAWKKVAELQGQGGGSLF 425 (543)
T ss_dssp TT-TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC-T-----TTBTSEEEEEECSCSCCCC
T ss_pred CC-CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC-c-----hhcCeEEEEEEcCCCCceE
Confidence 87 566666664 44433333 4787445777776 689999999988330 0 0001233 44456777889
Q ss_pred EEecCCCCceEEEe-------cCCeEEEEeC
Q 040307 316 VRWSPLELDWIAIA-------FVNKLQLLKV 339 (339)
Q Consensus 316 ~~~~p~~~~l~~~~-------~d~~v~~w~v 339 (339)
++++|++++|.+.+ .+++|.+|++
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 99999999877766 2789999985
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=9.5e-24 Score=177.81 Aligned_cols=282 Identities=13% Similarity=0.075 Sum_probs=186.7
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
+.+..+.+...+.+++|+|+ +++|++++. .++.|.+|+++..++.......+ .....+..++|+|++
T Consensus 29 ~~~~~~~~~~~~~~~~~spd---g~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg----- 95 (343)
T 1ri6_A 29 TLTQVVDVPGQVQPMVVSPD---KRYLYVGVR---PEFRVLAYRIAPDDGALTFAAES--ALPGSLTHISTDHQG----- 95 (343)
T ss_dssp EEEEEEECSSCCCCEEECTT---SSEEEEEET---TTTEEEEEEECTTTCCEEEEEEE--ECSSCCSEEEECTTS-----
T ss_pred EEeeeEecCCCCceEEECCC---CCEEEEeec---CCCeEEEEEecCCCCceeecccc--ccCCCCcEEEEcCCC-----
Confidence 44555667788999999999 998888882 23999999998655554432222 333488999999999
Q ss_pred CeEE-EeC-C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCC-Ceeee--
Q 040307 89 DIVA-TSG-D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDR-EILET-- 160 (339)
Q Consensus 89 ~~la-~~~-~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~-~~~~~-- 160 (339)
+.|+ ++. + .|.+|++.++. ......+..+ ..+.+++|+| +++++++++ .++.|.+||+.+ ++...
T Consensus 96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL------DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC------TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred CEEEEEecCCCeEEEEECCCCccccccccccCC------CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 6554 444 4 89999996332 1233444433 4588999998 888888777 899999999987 54322
Q ss_pred --eeec-cCCceeEEEec-CCcEEEEE-eCCCcEEEEECCC--Ccc--eeeEEeCC---CCCCCeEEEEEecCCCCeEEE
Q 040307 161 --QLVA-HDREVYDISWG-GFNVFASV-SGDCSVRVFDLRD--KER--STIIYENP---VQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 161 --~~~~-~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~--~~~--~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~ 228 (339)
.+.. ....+.+++|+ ++++++++ ..++.|.+||+.. ++. .......+ .....+..++|+| ++++|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v 247 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYA 247 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEE
Confidence 2222 33478899999 67766544 4789999999964 321 11111111 1124577899998 7777765
Q ss_pred Ee-eCCCeEEEEecCCCC---CceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307 229 VG-MDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEP 303 (339)
Q Consensus 229 ~~-~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 303 (339)
+. .++. |.+||+.... +.+..+..+.. +..++|+|++ ++|++++ .++.|.+|+++... +....
T Consensus 248 ~~~~~~~-i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~---------g~~~~ 315 (343)
T 1ri6_A 248 CDRTASL-ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQ---------GLLHE 315 (343)
T ss_dssp EETTTTE-EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEETTT---------TEEEE
T ss_pred EecCCCE-EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEcCCC---------ceeeE
Confidence 55 5666 9999997321 23344444444 8999999999 5777766 68999999877543 01122
Q ss_pred eeeecccceeEEEEecCCCC
Q 040307 304 ELCYQSMAEINVVRWSPLEL 323 (339)
Q Consensus 304 ~~~~~~~~~i~~~~~~p~~~ 323 (339)
+..........+++|.|+..
T Consensus 316 ~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 316 KGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEECSSSCCEEEEEEEC-
T ss_pred ccccccCCCCeeEEEEcccC
Confidence 22223334566777777543
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1e-24 Score=202.53 Aligned_cols=282 Identities=13% Similarity=0.116 Sum_probs=199.2
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCC-cccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETS-DFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD- 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~- 96 (339)
.|.+++|||| +++|++++ ++.|.+|+.+.... .... ...|...+..++|+||+ +.||.+++
T Consensus 110 ~v~~~~~SpD---g~~l~~~~-----~~~i~~~d~~~~~~~~~~~----l~~~~~~~~~~~~SPDG-----~~la~~~~~ 172 (741)
T 2ecf_A 110 GIVDYQWSPD---AQRLLFPL-----GGELYLYDLKQEGKAAVRQ----LTHGEGFATDAKLSPKG-----GFVSFIRGR 172 (741)
T ss_dssp ESCCCEECTT---SSEEEEEE-----TTEEEEEESSSCSTTSCCB----CCCSSSCEEEEEECTTS-----SEEEEEETT
T ss_pred CcceeEECCC---CCEEEEEe-----CCcEEEEECCCCCcceEEE----cccCCcccccccCCCCC-----CEEEEEeCC
Confidence 3889999999 99999999 59999987764410 2222 24677889999999999 88888876
Q ss_pred cEEEEeecCCcceeEEEeecCCCcc-----------CCCCEEEEEEcCCCCCEEEEEeCCC-------------------
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSE-----------FSSAITSFDWAGFDTRRVATCSVDT------------------- 146 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~l~~~~~d~------------------- 146 (339)
.|++|++.+++ .......+.... ....+..+.|+| ++++|++++.|+
T Consensus 173 ~i~~~d~~~g~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 173 NLWVIDLASGR--QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp EEEEEETTTTE--EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred cEEEEecCCCC--EEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 99999998875 333332222000 001247899998 999999988765
Q ss_pred --------------eEEEEECCC-Ceeeeeee--ccCCceeEEEecC-CcEEEEEeC-----CCcEEEEECCCCcceeeE
Q 040307 147 --------------TCVIWDIDR-EILETQLV--AHDREVYDISWGG-FNVFASVSG-----DCSVRVFDLRDKERSTII 203 (339)
Q Consensus 147 --------------~v~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~-~~~l~~~~~-----d~~i~i~d~~~~~~~~~~ 203 (339)
.|.+||+.+ ++...... .|...+..++| + ++.|++++. +..|++||+.+++.....
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 889999988 76544332 36778899999 6 677776653 567999999988754443
Q ss_pred EeCCCCCC---CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE-EeccCCCCeEEEEeCCC-
Q 040307 204 YENPVQDC---PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI-SWAPLYGRRLCSVADDS- 278 (339)
Q Consensus 204 ~~~~~~~~---~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~dg- 278 (339)
... ... .+..++|+| +++++++++.++. ++||.+...+. ...+..|...+..+ .|+|++..++++++.++
T Consensus 329 ~~~--~~~~~~~~~~~~~sp-dg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 329 HET--SPTWVPLHNSLRFLD-DGSILWSSERTGF-QHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA 403 (741)
T ss_dssp EEE--CSSCCCCCSCCEECT-TSCEEEEECTTSS-CEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT
T ss_pred EcC--CCCcCCcCCceEECC-CCeEEEEecCCCc-cEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC
Confidence 332 112 346889998 7888888888887 78887764345 77788888888887 59999953445566665
Q ss_pred -cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC----CeEEEEe
Q 040307 279 -RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV----NKLQLLK 338 (339)
Q Consensus 279 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d----~~v~~w~ 338 (339)
.++||++.... ...........+..++|+|+++.++....+ ..+.+|+
T Consensus 404 ~~~~l~~~~~~g------------~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 404 RESQIYAVPLQG------------GQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp TCBEEEEEETTC------------CCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEEEEEcCC------------CCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 89999998643 112222235568899999999987754332 3455554
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.7e-25 Score=207.24 Aligned_cols=287 Identities=7% Similarity=-0.002 Sum_probs=188.3
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC---CceEEEEcCCCCCCCCCeEEE
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY---TPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~~~~~la~ 93 (339)
...+.+++|+|+ ++++++ + .||.|++|+.... +... .+ ..|.. .|.+++||||+ +.|++
T Consensus 16 ~~~~~~~~~spd---g~~~~~-~----~dg~i~~~d~~~g--~~~~--~~-~~~~~~~~~v~~~~~SpDg-----~~l~~ 77 (723)
T 1xfd_A 16 KIHDPEAKWISD---TEFIYR-E----QKGTVRLWNVETN--TSTV--LI-EGKKIESLRAIRYEISPDR-----EYALF 77 (723)
T ss_dssp CCCCCCCCBSSS---SCBCCC-C----SSSCEEEBCGGGC--CCEE--EE-CTTTTTTTTCSEEEECTTS-----SEEEE
T ss_pred cccccccEEcCC---CcEEEE-e----CCCCEEEEECCCC--cEEE--Ee-ccccccccccceEEECCCC-----CEEEE
Confidence 345789999999 997766 4 4899999665543 3332 12 33443 49999999999 77777
Q ss_pred eC-----------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307 94 SG-----------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL 162 (339)
Q Consensus 94 ~~-----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 162 (339)
++ ..+.+||+.+++...+.....+. ..+..++|+| +++.|++++. +.|++||+.+++.....
T Consensus 78 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-----~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 78 SYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN-----AKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp EESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS-----CCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred EecCccceeecceeeEEEEECCCCceEeccCCcccc-----ccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 64 25789999988632222222222 4588899999 9999999886 89999999988766555
Q ss_pred eccCCce------------------eEEEec-CCcEEEEEeCCC----------------------------------cE
Q 040307 163 VAHDREV------------------YDISWG-GFNVFASVSGDC----------------------------------SV 189 (339)
Q Consensus 163 ~~~~~~v------------------~~~~~~-~~~~l~~~~~d~----------------------------------~i 189 (339)
..+...+ .+++|+ +++.|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 4433333 789999 788998887553 78
Q ss_pred EEEECCCCcceeeEEeC---CCCCCCeEEEEEecCCCCeEEEEeeCC---CeEEEEecCCCCCceEEEec-CCCCee---
Q 040307 190 RVFDLRDKERSTIIYEN---PVQDCPLLRLEWNKADPRFMATVGMDS---NKVVVLDIRFPTNPVVVLSK-HEGSVN--- 259 (339)
Q Consensus 190 ~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~d~---~~i~i~d~~~~~~~~~~~~~-~~~~v~--- 259 (339)
++||+.+++....+... ..+...+..++|+| +|+++++....+ ..|++||+.. ++....+.. +...+.
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEeccC
Confidence 99999887642322211 01245788999999 888887765432 2499999986 444444433 344443
Q ss_pred -EEEeccCCCCeEEE-EeCCC----c--EEEEEecCCCCCCCCCCCCCcccceeeecccceeEE-EEecCCCCceEEEec
Q 040307 260 -GISWAPLYGRRLCS-VADDS----R--ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV-VRWSPLELDWIAIAF 330 (339)
Q Consensus 260 -~~~~~p~~~~~l~~-~~~dg----~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~l~~~~~ 330 (339)
.++|+|+|..+++. +..++ . |.+||+.... . ......+..+...+.. ++|+|+++.|+..+.
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~--------~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~ 379 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS-S--------NDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS-S--------SCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC-C--------ccceeEeecCCeEEEeeeEEcCCCCEEEEEEc
Confidence 88999999533333 45677 4 5555522322 0 0001222222333444 799999998876654
Q ss_pred C---CeEEEEeC
Q 040307 331 V---NKLQLLKV 339 (339)
Q Consensus 331 d---~~v~~w~v 339 (339)
+ +.++||++
T Consensus 380 ~~~~~~~~l~~~ 391 (723)
T 1xfd_A 380 EDLPRRRQLYSA 391 (723)
T ss_dssp SSCTTCCEEEEE
T ss_pred CCCCcceEEEEE
Confidence 4 78899874
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=9.2e-24 Score=177.25 Aligned_cols=275 Identities=9% Similarity=0.059 Sum_probs=184.0
Q ss_pred EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEeC-C-cEEE
Q 040307 24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATSG-D-SLRL 100 (339)
Q Consensus 24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~~-~-~i~i 100 (339)
.|.++ .+..++++. .++.|.+|+... ++... .+ ..+...+ .++|+|++ + +++++. + .|.+
T Consensus 4 ~~~~~--~~~~~v~~~----~~~~v~~~d~~~--~~~~~--~~-~~~~~~~-~~~~s~dg-----~~l~~~~~~~~~i~~ 66 (331)
T 3u4y_A 4 MFQTT--SNFGIVVEQ----HLRRISFFSTDT--LEILN--QI-TLGYDFV-DTAITSDC-----SNVVVTSDFCQTLVQ 66 (331)
T ss_dssp ---CC--CCEEEEEEG----GGTEEEEEETTT--CCEEE--EE-ECCCCEE-EEEECSSS-----CEEEEEESTTCEEEE
T ss_pred eEcCC--CCEEEEEec----CCCeEEEEeCcc--cceee--eE-EccCCcc-eEEEcCCC-----CEEEEEeCCCCeEEE
Confidence 45555 134455555 689999976553 34433 22 2334456 99999999 6 455554 3 9999
Q ss_pred EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307 101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT---TCVIWDIDREILETQLVAHDREVYDISWG-G 176 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~ 176 (339)
||+.+++. ....+..+. .+..+++|+| ++++++++..++ .|.+||+.+++.+..+.. .....+++|+ +
T Consensus 67 ~d~~~~~~-~~~~~~~~~-----~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spd 138 (331)
T 3u4y_A 67 IETQLEPP-KVVAIQEGQ-----SSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPN 138 (331)
T ss_dssp EECSSSSC-EEEEEEECS-----SCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTT
T ss_pred EECCCCce-eEEecccCC-----CCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCC
Confidence 99998872 155555554 4555599998 999888655553 899999999988877764 4456899999 6
Q ss_pred Cc-EEEEEeCCCc-EEEEECCCCcceeeE-EeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCCCCc---eE
Q 040307 177 FN-VFASVSGDCS-VRVFDLRDKERSTII-YENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPTNP---VV 249 (339)
Q Consensus 177 ~~-~l~~~~~d~~-i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~~~~---~~ 249 (339)
++ ++++...++. |.+|++......... .........+..++|+| +++++++++. ++. |.+||+.. .+. +.
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~-v~v~d~~~-~~~~~~~~ 215 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNS-IGILETQN-PENITLLN 215 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTE-EEEEECSS-TTSCEEEE
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCe-EEEEECCC-Ccccceee
Confidence 66 4455566688 999999865432111 11001235679999998 7886666554 555 99999986 555 55
Q ss_pred EEecCCCCeeEEEeccCCCCeEEEE-eCCCcEEEEEecCCCCCCCCCCCCCcccceee-e-------cccceeEEEEecC
Q 040307 250 VLSKHEGSVNGISWAPLYGRRLCSV-ADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-Y-------QSMAEINVVRWSP 320 (339)
Q Consensus 250 ~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~i~~~~~~p 320 (339)
.+.. ...+..++|+|++ ++|+++ ..++.|.+||+.+.+ ...... . ........++|+|
T Consensus 216 ~~~~-~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~sp 282 (331)
T 3u4y_A 216 AVGT-NNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGT-----------LSFVKSFGHGLLIDPRPLFGANQMALNK 282 (331)
T ss_dssp EEEC-SSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTE-----------EEEEEEEECCCCCCCGGGTTCCCEEECT
T ss_pred eccC-CCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCc-----------eeeecccccccccCCCCcccccceEECC
Confidence 6654 4677899999999 455544 467889999998766 100110 0 1112235689999
Q ss_pred CCCceEEEe-cCCeEEEEeC
Q 040307 321 LELDWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 321 ~~~~l~~~~-~d~~v~~w~v 339 (339)
+++++++++ .++.|.+|++
T Consensus 283 dg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTI 302 (331)
T ss_dssp TSSEEEEEETTTTEEEEEET
T ss_pred CCCEEEEecCCCCcEEEEEe
Confidence 999876655 5679999985
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=2.4e-24 Score=206.82 Aligned_cols=280 Identities=8% Similarity=0.011 Sum_probs=212.4
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..|...+.++.|+++ .+++++. .++.+.||.++..+..... + ..|. .+..++|+|++ +.|+.
T Consensus 200 ~~~~~~v~~~~~s~d----~l~~~~~----~dg~~~l~~~~~~g~~~~~---l-~~~~-~~~~~~~SpDG-----~~la~ 261 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH----RIYFITD----IDGFGQIYSTDLDGKDLRK---H-TSFT-DYYPRHLNTDG-----RRILF 261 (1045)
T ss_dssp ECCSSCCEEEEEETT----EEEEEEC----TTSSCEEEEEETTSCSCEE---C-CCCC-SSCEEEEEESS-----SCEEE
T ss_pred cCCCCcccceEEeCC----EEEEEEe----ccCceEEEEEeCCCCcceE---e-cCCC-CcceeeEcCCC-----CEEEE
Confidence 346788999999987 3445555 5889999988876554443 1 2333 57788999999 77777
Q ss_pred eCC-cEEEEeecCCcceeEEEeecCCCc------cCCCCEEEEEEc-CCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307 94 SGD-SLRLWEIHDDRTELKSLLNSNKTS------EFSSAITSFDWA-GFDTRRVATCSVDTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 94 ~~~-~i~iw~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 165 (339)
+.+ .|.+|++.... +..+..+... .+...+..++|+ | +++.|++++ ++.|.+|++..++.. .+..|
T Consensus 262 ~~~~~i~~~d~~~~~---l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~-~~~~~ 335 (1045)
T 1k32_A 262 SKGGSIYIFNPDTEK---IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL-KVPEP 335 (1045)
T ss_dssp EETTEEEEECTTTCC---EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE-ECSCC
T ss_pred EeCCEEEEecCCceE---eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE-EccCC
Confidence 776 99999984433 2244331100 011468899999 9 999999888 789999999877644 35567
Q ss_pred CC-ceeEEEecCCcEEEEEeCCCcEE-EEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 166 DR-EVYDISWGGFNVFASVSGDCSVR-VFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 166 ~~-~v~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
.. .+..++|++++.|+.++.+..+. +||+...+.... . .+...+..++|+| ++++|++++.++. |++||+..
T Consensus 336 ~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l-~---~~~~~~~~~~~Sp-DG~~la~~~~~~~-v~~~d~~t 409 (1045)
T 1k32_A 336 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF-E---ENLGNVFAMGVDR-NGKFAVVANDRFE-IMTVDLET 409 (1045)
T ss_dssp SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC-C---CCCCSEEEEEECT-TSSEEEEEETTSE-EEEEETTT
T ss_pred CcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEe-c---CCccceeeeEECC-CCCEEEEECCCCe-EEEEECCC
Confidence 76 88999999677888888888888 899887653322 2 2567899999998 9999999999887 99999986
Q ss_pred CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC----------cEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307 244 PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS----------RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI 313 (339)
Q Consensus 244 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 313 (339)
++.......|...+.+++|+|+| ++|++++.++ .|++||+.... ......|...+
T Consensus 410 -g~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-------------~~~l~~~~~~~ 474 (1045)
T 1k32_A 410 -GKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------------IFAATTENSHD 474 (1045)
T ss_dssp -CCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------------EEECSCSSSBE
T ss_pred -CceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-------------EEEeeCCCccc
Confidence 55556666888999999999999 5888776543 89999998765 44555677788
Q ss_pred EEEEecCCCCceEEEecCCeEEEEe
Q 040307 314 NVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 314 ~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
..++|+|+|+.|+.++.++..++|+
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999888888877766664
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1.7e-23 Score=175.75 Aligned_cols=268 Identities=10% Similarity=0.008 Sum_probs=186.1
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC-CceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY-TPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE 109 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~ 109 (339)
++|++++ .++.|.+|+.. +.+... .+..++.. .+..++|+|+++ .+++++. + .|.+||+.+++
T Consensus 2 ~~~v~~~----~~~~v~~~d~~--~~~~~~--~~~~~~~~~~~~~~~~s~dg~----~l~v~~~~~~~v~~~d~~~~~-- 67 (337)
T 1pby_B 2 DYILAPA----RPDKLVVIDTE--KMAVDK--VITIADAGPTPMVPMVAPGGR----IAYATVNKSESLVKIDLVTGE-- 67 (337)
T ss_dssp EEEEEEE----TTTEEEEEETT--TTEEEE--EEECTTCTTCCCCEEECTTSS----EEEEEETTTTEEEEEETTTCC--
T ss_pred cEEEEcC----CCCeEEEEECC--CCcEEE--EEEcCCCCCCccceEEcCCCC----EEEEEeCCCCeEEEEECCCCC--
Confidence 4678887 69999997654 334333 22223322 588999999993 3445555 3 99999998887
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe------------CCCeEEEEECCCCeeeeeeeccCCceeEEEec-C
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS------------VDTTCVIWDIDREILETQLVAHDREVYDISWG-G 176 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~ 176 (339)
....+.......+...+..++|+| ++++++++. .++.|.+||+.+++.+..+.. ...+.+++|+ +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d 145 (337)
T 1pby_B 68 TLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD 145 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT
T ss_pred eEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC
Confidence 444443211000002566899998 898888886 579999999999887777754 4567889999 7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----------------------
Q 040307 177 FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN---------------------- 234 (339)
Q Consensus 177 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~---------------------- 234 (339)
+++|+++ ++.|.+||+.+++....+... .... .+.|+| ++..++..+..+.
T Consensus 146 g~~l~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (337)
T 1pby_B 146 GSKLYGL--GRDLHVMDPEAGTLVEDKPIQ-SWEA---ETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218 (337)
T ss_dssp SSCEEEE--SSSEEEEETTTTEEEEEECST-TTTT---TTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred CCEEEEe--CCeEEEEECCCCcEeeeeecc-ccCC---CceeCC-CccEEeeeccCCCceeeeeeccccccccccccccc
Confidence 7777777 689999999988754333222 1112 237887 6665554443322
Q ss_pred -eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeeccccee
Q 040307 235 -KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEI 313 (339)
Q Consensus 235 -~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 313 (339)
.|.+||+.........+..+...+.+++|+|++ ++|+++ ++.|.+||+...+ ..........+
T Consensus 219 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~-------------~~~~~~~~~~~ 282 (337)
T 1pby_B 219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------------SIKRVPLPHSY 282 (337)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------------EEEEEECSSCC
T ss_pred cceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCc-------------CcceecCCCce
Confidence 268999987432233445566778899999999 577777 7999999998766 33333445568
Q ss_pred EEEEecCCCCceEEEecCCeEEEEeC
Q 040307 314 NVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 314 ~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+++|+|+++.+++++.++.|++|++
T Consensus 283 ~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEET
T ss_pred eeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 89999999998888889999999985
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.2e-23 Score=194.85 Aligned_cols=283 Identities=8% Similarity=0.046 Sum_probs=186.0
Q ss_pred CeeEEEeeecCCcccEEEEeeecc-----ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLE-----DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.|.+++|||| |++||+++... ..++.+.+|+++........ ....|...+..++||||+ +.||.
T Consensus 62 ~v~~~~~SpD---g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~~~~SPdG-----~~la~ 130 (723)
T 1xfd_A 62 RAIRYEISPD---REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD---PPEVSNAKLQYAGWGPKG-----QQLIF 130 (723)
T ss_dssp TCSEEEECTT---SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC---CTTCCSCCCSBCCBCSST-----TCEEE
T ss_pred ccceEEECCC---CCEEEEEecCccceeecceeeEEEEECCCCceEecc---CCccccccccccEECCCC-----CEEEE
Confidence 4899999999 99999987210 01378889877654321111 112455568999999999 88888
Q ss_pred eCC-cEEEEeecCCcceeEEEeecCCCc-------------cCCCCEEEEEEcCCCCCEEEEEeCCC-------------
Q 040307 94 SGD-SLRLWEIHDDRTELKSLLNSNKTS-------------EFSSAITSFDWAGFDTRRVATCSVDT------------- 146 (339)
Q Consensus 94 ~~~-~i~iw~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~l~~~~~d~------------- 146 (339)
+++ .|++|++.+++ .......+... +....+.+++|+| +++.|++++.++
T Consensus 131 ~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 131 IFENNIYYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp EETTEEEEESSSSSC--CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSS
T ss_pred EECCeEEEEECCCCc--eEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCC
Confidence 886 99999999876 33333332200 0002347899999 999999987653
Q ss_pred ---------------------eEEEEECCCCeeeeeeecc------CCceeEEEec-CCcEEEEEeC----CCcEEEEEC
Q 040307 147 ---------------------TCVIWDIDREILETQLVAH------DREVYDISWG-GFNVFASVSG----DCSVRVFDL 194 (339)
Q Consensus 147 ---------------------~v~i~d~~~~~~~~~~~~~------~~~v~~~~~~-~~~~l~~~~~----d~~i~i~d~ 194 (339)
.|++||+.+++....+..+ ...+..++|+ +++++++... +..|++||+
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 7999999888755555543 5678999999 7877766643 357999999
Q ss_pred CCCcceeeEEeCCCCCCCe----EEEEEecCCCCeEEEE--eeCC----C-eEEEEecCCCCC--ceEEEecCCCCeeE-
Q 040307 195 RDKERSTIIYENPVQDCPL----LRLEWNKADPRFMATV--GMDS----N-KVVVLDIRFPTN--PVVVLSKHEGSVNG- 260 (339)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~~l~~~--~~d~----~-~i~i~d~~~~~~--~~~~~~~~~~~v~~- 260 (339)
.+++........ +...+ ..++|+| +|+.|+.. ..++ . .|.+||....+. ....+..+...+..
T Consensus 288 ~~g~~~~~~~~~--~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~ 364 (723)
T 1xfd_A 288 TTGVCTKKHEDE--SEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI 364 (723)
T ss_dssp TTCCEEEEEEEE--CSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred CCCcceEEEEec--cCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence 988754443332 22333 3789999 77766654 3444 2 377777323233 13444443445554
Q ss_pred EEeccCCCCeEEEEeC-C--CcEEEEEecCCCCCCCCCCCCCcccceeeec---ccceeEEEEecCCCCceEEEe
Q 040307 261 ISWAPLYGRRLCSVAD-D--SRALIWEVVGPGYRSGNGGPSGDVEPELCYQ---SMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 261 ~~~~p~~~~~l~~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~l~~~~ 329 (339)
++|+|++. .|+..+. + +.++||++.... ......+.. |...+..++|+|+++.++...
T Consensus 365 ~~~spdg~-~l~~~~~~~~~~~~~l~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 365 LAYDEKGN-KIYFLSTEDLPRRRQLYSANTVG----------NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEETTTT-EEEEEESSSCTTCCEEEEECSST----------TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred eEEcCCCC-EEEEEEcCCCCcceEEEEEeCCC----------CCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 69999994 6665554 4 789999998654 001122221 566789999999998777543
No 144
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.93 E-value=2.3e-22 Score=170.91 Aligned_cols=284 Identities=10% Similarity=0.072 Sum_probs=187.4
Q ss_pred EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC------
Q 040307 23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD------ 96 (339)
Q Consensus 23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~------ 96 (339)
.+..+. ..++.+|++..+.++.|.+|.++..++.+.. .... +...+..++|+|++ ++|++++.
T Consensus 7 ~~~~~~---~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~--~~~~-~~~~p~~l~~spdg-----~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 7 PSTTDS---ELTMLVGTYTSGNSKGIYTFRFNEETGESLP--LSDA-EVANPSYLIPSADG-----KFVYSVNEFSKDQA 75 (361)
T ss_dssp CCGGGG---EEEEEEEECCSSSCCEEEEEEEETTTCCEEE--EEEE-ECSCCCSEEECTTS-----SEEEEEECCSSTTC
T ss_pred hhhCCC---ceEEEEEeccCCCCCCEEEEEEeCCCCCEEE--eecc-cCCCCceEEECCCC-----CEEEEEEccCCCCC
Confidence 334445 6788888865556789999999988777665 2223 67778899999999 66655432
Q ss_pred cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCeeeeeee---c------
Q 040307 97 SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREILETQLV---A------ 164 (339)
Q Consensus 97 ~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~---~------ 164 (339)
.|.+|+++. ++...+.....+. .....+++ ++++|++++ .++.|.+|++.....+..+. .
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~-----~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~ 147 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMG-----ADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP 147 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSS-----SCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred cEEEEEEeCCCCcEEEeeEeccCC-----CCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence 899999876 3333444444333 45667777 456666655 68899999997543322211 1
Q ss_pred -----cCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcc------ee-----eEEeCCCCCCCeEEEEEecCCCCeE
Q 040307 165 -----HDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKER------ST-----IIYENPVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 165 -----~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~------~~-----~~~~~~~~~~~v~~~~~~p~~~~~l 226 (339)
+...+.+++|+ +++++++++ .++.|.+|++..... .. ..... .....+..++|+| +++++
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~sp-dg~~l 225 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNS-DGKFA 225 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECT-TSSEE
T ss_pred CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEcC-CCCEE
Confidence 12235789999 677565554 588999999876542 11 11121 1345678999998 88888
Q ss_pred EEEee-CCCeEEEEecCCCCCc--eEEEe---cCCCCeeEEEeccCCCCeEEEEeC--CCcEEEEEecCCCCCCCCCCCC
Q 040307 227 ATVGM-DSNKVVVLDIRFPTNP--VVVLS---KHEGSVNGISWAPLYGRRLCSVAD--DSRALIWEVVGPGYRSGNGGPS 298 (339)
Q Consensus 227 ~~~~~-d~~~i~i~d~~~~~~~--~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~ 298 (339)
++++. ++. |.+||+.. +.. +..+. .+......++|+|++ ++|+++.. ++.|.+|++....
T Consensus 226 ~v~~~~~~~-v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~--------- 293 (361)
T 3scy_A 226 YLINEIGGT-VIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETN--------- 293 (361)
T ss_dssp EEEETTTCE-EEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTT---------
T ss_pred EEEcCCCCe-EEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCC---------
Confidence 77774 555 99999974 322 22222 223456799999999 57765554 5899999997432
Q ss_pred CcccceeeecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307 299 GDVEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v 339 (339)
+.............+..++|+|++++|++++ .++.|.+|++
T Consensus 294 g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 294 GTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp CCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 0111222222245688999999999888776 6789999753
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=2e-22 Score=174.90 Aligned_cols=206 Identities=13% Similarity=0.168 Sum_probs=150.1
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCC------CC---c-ccceeeEeecCCCCceEEEEcCCCCCCCC
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPE------TS---D-FSADNRLIFDHPYTPTNIAFFPSEETLNP 88 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~------~~---~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 88 (339)
.+..++++++ +.++++|+ .++ ++||+.... .. . ..........+...|.+++|+|++
T Consensus 38 ~~n~lavs~~---~~~l~~~~----~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg----- 104 (434)
T 2oit_A 38 RSSLLAVSNK---YGLVFAGG----ASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN----- 104 (434)
T ss_dssp CCBCEEEETT---TTEEEEEE----TTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-----
T ss_pred CccEEEEecC---CCEEEEEC----CCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-----
Confidence 5889999999 88999988 455 888764311 00 0 001111224567789999999999
Q ss_pred CeEE----EeC-C-cEEEEeecCC-----c----ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 040307 89 DIVA----TSG-D-SLRLWEIHDD-----R----TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI 153 (339)
Q Consensus 89 ~~la----~~~-~-~i~iw~~~~~-----~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~ 153 (339)
++|| +++ | .|+|||+.+. + ......+.+|. ..|++++|+|.++++|++++.||+|++||+
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~~p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG-----GMVIDMKWNPTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG-----GSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC-----CceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence 7888 666 4 9999998764 1 11234555666 899999999944899999999999999999
Q ss_pred CCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC----CCCCCeEEEEEecCCCCeEEE
Q 040307 154 DREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP----VQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 154 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~ 228 (339)
+++.......+|...|.+++|+ ++++|++|+.|+.|++||++ ++....+.... .|...+.+++|++ ++.++++
T Consensus 180 ~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~ 257 (434)
T 2oit_A 180 TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIV 257 (434)
T ss_dssp SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEE
T ss_pred CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEE
Confidence 9987766667788999999999 79999999999999999998 33222222111 1234789999998 6666655
Q ss_pred Ee-eCCC-----eEEEEecCCC
Q 040307 229 VG-MDSN-----KVVVLDIRFP 244 (339)
Q Consensus 229 ~~-~d~~-----~i~i~d~~~~ 244 (339)
.+ .+|. .+++|+++..
T Consensus 258 ~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 258 YAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEETTCCSSSCCEEEEEECCCT
T ss_pred EccCCCccCCCCceEEEEeccC
Confidence 43 2221 3889999864
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=7.8e-23 Score=168.36 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=168.7
Q ss_pred CceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCC-CCCcccceeeEeecC-CCCceEEEEcCCCCC
Q 040307 8 KPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNP-ETSDFSADNRLIFDH-PYTPTNIAFFPSEET 85 (339)
Q Consensus 8 ~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~ 85 (339)
++......+...|.+++|+|+ +++|+++. ++.|.+|++.. ...... . ..+ ...+.+++|+|++
T Consensus 32 ~~~~~~~~~~~~v~~~~~spd---g~~l~~~~-----~~~i~~~d~~~~~~~~~~----~-~~~~~~~~~~~~~spdg-- 96 (297)
T 2ojh_A 32 RKMRVVWQTPELFEAPNWSPD---GKYLLLNS-----EGLLYRLSLAGDPSPEKV----D-TGFATICNNDHGISPDG-- 96 (297)
T ss_dssp TEEEEEEEESSCCEEEEECTT---SSEEEEEE-----TTEEEEEESSSCCSCEEC----C-CTTCCCBCSCCEECTTS--
T ss_pred CceeeeccCCcceEeeEECCC---CCEEEEEc-----CCeEEEEeCCCCCCceEe----c-cccccccccceEECCCC--
Confidence 344445567889999999999 99999988 78999987765 322211 1 233 4778999999999
Q ss_pred CCCCeEEEeC--C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEE-EEeCCCeEEEEECCC-Ceee
Q 040307 86 LNPDIVATSG--D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-TCSVDTTCVIWDIDR-EILE 159 (339)
Q Consensus 86 ~~~~~la~~~--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~-~~~~ 159 (339)
++|++++ . ...||.++.... ....+..+ ..+..++|+| +++.|+ +++.++.+++|+++. ....
T Consensus 97 ---~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~------~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 97 ---ALYAISDKVEFGKSAIYLLPSTGG-TPRLMTKN------LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp ---SEEEEEECTTTSSCEEEEEETTCC-CCEECCSS------SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ---CEEEEEEeCCCCcceEEEEECCCC-ceEEeecC------CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcc
Confidence 7777765 1 566665543221 23334333 3588999998 888776 788899999998632 2334
Q ss_pred eeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC----
Q 040307 160 TQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS---- 233 (339)
Q Consensus 160 ~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~---- 233 (339)
..+..+...+.+++|+ +++.|+.++ .++.+++|++........... .+...+..++|+| ++++|++++.++
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSP-SGDKVVFVSYDADVFD 242 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECT-TSSEEEEEEEETTCCS
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECC-CCCEEEEEEcCCCCCc
Confidence 5566678889999999 677777665 589999999863322222222 2456788999998 888888877652
Q ss_pred ------CeEEEEecCCCCC-ceEEEecCCCCeeEEEeccCCCCeEEEEeCC
Q 040307 234 ------NKVVVLDIRFPTN-PVVVLSKHEGSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 234 ------~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 277 (339)
..|++||+..... .+..+..|...+..++|+|++ +.|++++.+
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~ 292 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG-DEFAYVRYF 292 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS-SEEEEEEEC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCC-CEEEEEEec
Confidence 2399999986322 234455788899999999999 477766654
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=6.9e-23 Score=196.71 Aligned_cols=270 Identities=7% Similarity=-0.045 Sum_probs=200.8
Q ss_pred cCCeeEEEee-ecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC-CceEEEEcCCCCCCCCCeEEEe
Q 040307 17 QWPISTVAWS-VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY-TPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 17 ~~~v~~i~~s-p~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~la~~ 94 (339)
...+.+++|+ |+ ++.||+++ ++.|.+|+.. ...... ...|.. .+..++|+ ++ +.|+.+
T Consensus 295 ~~~v~~~~~S~pd---G~~la~~~-----~~~i~~~~~~--~~~~~~----~~~~~~~~~~~~~~s-dg-----~~l~~~ 354 (1045)
T 1k32_A 295 IPSKFAEDFSPLD---GDLIAFVS-----RGQAFIQDVS--GTYVLK----VPEPLRIRYVRRGGD-TK-----VAFIHG 354 (1045)
T ss_dssp CGGGGEEEEEECG---GGCEEEEE-----TTEEEEECTT--SSBEEE----CSCCSCEEEEEECSS-SE-----EEEEEE
T ss_pred ccccceeeecCCC---CCEEEEEE-----cCEEEEEcCC--CCceEE----ccCCCcceEEeeeEc-CC-----CeEEEE
Confidence 3479999999 99 99999988 7899996554 333322 245666 89999999 88 777777
Q ss_pred CC--cEE-EEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeE
Q 040307 95 GD--SLR-LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYD 171 (339)
Q Consensus 95 ~~--~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~ 171 (339)
++ .+. +|++..++ . ..+.+|. ..+..++|+| ++++|++++.++.|++||+.+++....+..|...+.+
T Consensus 355 s~~~~l~~~~d~~~~~--~-~~l~~~~-----~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGK--A-EKFEENL-----GNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp ETTEEEEEEEETTTCC--E-EECCCCC-----CSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred ECCCceEEEEECCCCC--c-eEecCCc-----cceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence 64 777 88887765 2 2333555 7899999998 9999999999999999999999877777788889999
Q ss_pred EEec-CCcEEEEEeCCC----------cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 172 ISWG-GFNVFASVSGDC----------SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 172 ~~~~-~~~~l~~~~~d~----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
++|+ ++++|++++.++ .|++||+.+++ ...+ ..+...+..++|+| +|+.|++++.++. ..+|+
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l---~~~~~~~~~~~~sp-dG~~l~~~s~~~~-~~~~~ 499 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA---TTENSHDYAPAFDA-DSKNLYYLSYRSL-DPSPD 499 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC---SCSSSBEEEEEECT-TSCEEEEEESCCC-CCEEC
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe---eCCCcccCCceEcC-CCCEEEEEecccC-CcCcc
Confidence 9999 788888887654 89999998875 2222 22456788899998 8999998887766 66665
Q ss_pred cCCCC------------------------------------------CceEEEecCCCCeeEEEeccCCCCeEEE-----
Q 040307 241 IRFPT------------------------------------------NPVVVLSKHEGSVNGISWAPLYGRRLCS----- 273 (339)
Q Consensus 241 ~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~----- 273 (339)
..... ..+..+..|.+.+..++++|++ .++++
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g 578 (1045)
T 1k32_A 500 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHG 578 (1045)
T ss_dssp SSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCC
T ss_pred hhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccC
Confidence 32110 1123344466788999999998 56664
Q ss_pred ------Ee--CCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 274 ------VA--DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 274 ------~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
.+ ....|.+||+...+ ..... ..+..++|||||+.|++++.+ .+++|++
T Consensus 579 ~~~~~~~~~~~~~~l~~~d~~~~~-------------~~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~ 635 (1045)
T 1k32_A 579 EFAAYYQGAPEKGVLLKYDVKTRK-------------VTEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFP 635 (1045)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCC-------------EEEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred cccccccccCCCceEEEEECCCCc-------------EEEee---cCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence 12 23467777776665 22222 568899999999988877665 8999974
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=3.1e-23 Score=191.56 Aligned_cols=269 Identities=12% Similarity=0.089 Sum_probs=182.5
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-----------------CCCceEEEEc
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-----------------PYTPTNIAFF 80 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~l~~~ 80 (339)
..+..+.|. . +.+ +++. .++ | +||.......... + ..+ ...|.+++|+
T Consensus 26 ~~~~~~~w~-g---~~~-~~~~----~~~-i-~~d~~tg~~~~~~---l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s 90 (706)
T 2z3z_A 26 EYVVGLQWM-G---DNY-VFIE----GDD-L-VFNKANGKSAQTT---R-FSAADLNALMPEGCKFQTTDAFPSFRTLDA 90 (706)
T ss_dssp --CTTCEEE-T---TEE-EEEE----TTE-E-EEEC-------CE---E-EEHHHHHTTC-----------CCCEEEEET
T ss_pred ccCCCCcCc-C---CeE-EEEe----CCc-E-EEECCCCcEeeEE---e-echhHhhhhccchhccccccccCceeEEEC
Confidence 456778888 5 554 4445 356 7 9776544330021 1 111 1569999999
Q ss_pred CCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-----
Q 040307 81 PSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR----- 155 (339)
Q Consensus 81 ~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~----- 155 (339)
|++ .++++..+.|++||+.+++ .. .+..+. ..+.+++|+| +++.|+++ .++.|++||+.+
T Consensus 91 pd~-----~~~~~~~~~i~~~d~~~~~--~~-~l~~~~-----~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 91 GRG-----LVVLFTQGGLVGFDMLARK--VT-YLFDTN-----EETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp TTT-----EEEEEETTEEEEEETTTTE--EE-EEECCT-----TCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred CCC-----eEEEEECCEEEEEECCCCc--eE-EccCCc-----ccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccC
Confidence 995 7777766699999998875 33 333343 5678899999 99999985 689999999988
Q ss_pred CeeeeeeeccCCc--------------eeEEEec-CCcEEEEEe---------------------------------CCC
Q 040307 156 EILETQLVAHDRE--------------VYDISWG-GFNVFASVS---------------------------------GDC 187 (339)
Q Consensus 156 ~~~~~~~~~~~~~--------------v~~~~~~-~~~~l~~~~---------------------------------~d~ 187 (339)
++.......+... +.++.|+ ++++|++++ .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 7655544333332 4889999 789999887 446
Q ss_pred cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC----CeEEEEecCCCCCceEEEe--cCCC---Ce
Q 040307 188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS----NKVVVLDIRFPTNPVVVLS--KHEG---SV 258 (339)
Q Consensus 188 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~----~~i~i~d~~~~~~~~~~~~--~~~~---~v 258 (339)
.|++||+.+++.... .....+...+.+++|+| +++.|++++.++ ..|++||+.+... ...+. .+.. .+
T Consensus 236 ~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 236 TVGIYHLATGKTVYL-QTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEETTTTEEEEC-CCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCC
T ss_pred EEEEEECCCCceEee-ccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECcc
Confidence 799999988764332 22223456789999998 899898887775 1399999987322 33322 2222 24
Q ss_pred eEEEecc--CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEE-EEecCCCCceEEEecC
Q 040307 259 NGISWAP--LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINV-VRWSPLELDWIAIAFV 331 (339)
Q Consensus 259 ~~~~~~p--~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~l~~~~~d 331 (339)
..++|+| ++ +++++++.|+.++||.+.... .....+..+...+.. ++|+|+++.++.++.+
T Consensus 313 ~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~-----------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 313 HPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTG-----------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp SCCEECTTCSS-EEEEEECTTSSCEEEEEETTS-----------CEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred CCceeecCCCC-EEEEEEccCCccEEEEEECCC-----------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 6789999 98 599999999999999988433 012233456666776 8999999887765543
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.2e-22 Score=183.62 Aligned_cols=262 Identities=10% Similarity=0.023 Sum_probs=184.9
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCC-CCceEEEEcCCCCCCCCCeEEEeC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHP-YTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
..+|++++|+|| |+.||+++. .+|+++||+++ ++.... + ..+. ..+..++|+|+. -++.+..
T Consensus 21 ~~~~~~~~~~~D---G~~la~~s~---~~g~~~lw~~~--~g~~~~---l-t~~~~~~~~~~~~spd~-----~l~~~~~ 83 (582)
T 3o4h_A 21 AVEKYSLQGVVD---GDKLLVVGF---SEGSVNAYLYD--GGETVK---L-NREPINSVLDPHYGVGR-----VILVRDV 83 (582)
T ss_dssp HSCEEEEEEEET---TTEEEEEEE---ETTEEEEEEEE--TTEEEE---C-CSSCCSEECEECTTCSE-----EEEEEEC
T ss_pred ccchheeecCCC---CCeEEEEEc---cCCceeEEEEc--CCCcEe---e-ecccccccccccCCCCe-----EEEEecc
Confidence 568999999999 999999883 48999999873 333332 2 3444 689999999983 3443332
Q ss_pred ---C-cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307 96 ---D-SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTR-RVATCSVDTTCVIWDIDREILETQLVAHDRE 168 (339)
Q Consensus 96 ---~-~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 168 (339)
+ ...||.++. ... .. .+... ..+...+|+| +++ .+++++.++.+.+||+.+++...... +..
T Consensus 84 ~~g~~~~~l~~~~~~~~g~-~~-~l~~~------~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~- 152 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGE-EQ-RLEAV------KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELAR-LPG- 152 (582)
T ss_dssp STTSCCEEEEEEETTSTTC-CE-ECTTS------CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS-
T ss_pred CCCCcceEEEEEeccCCCc-cc-cccCC------CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeec-CCC-
Confidence 3 566766654 321 11 23222 2344567887 554 33444445555699998887655443 333
Q ss_pred eeEEEec-CCcEEEEEeCC----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eEEEEecC
Q 040307 169 VYDISWG-GFNVFASVSGD----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-KVVVLDIR 242 (339)
Q Consensus 169 v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~i~d~~ 242 (339)
.+++|+ ++++|++++.+ +.|++||+.+++... + . .+...+..++|+| +|+.|+++..++. .|++||+.
T Consensus 153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l-~--~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-F-D--SGEGSFSSASISP-GMKVTAGLETAREARLVTVDPR 226 (582)
T ss_dssp -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-E-C--CSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTT
T ss_pred -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-e-e--cCCCccccceECC-CCCEEEEccCCCeeEEEEEcCC
Confidence 789999 89999988877 789999998877432 2 2 2456789999999 9999997777771 39999998
Q ss_pred CCCCceEEEecCCCCeeEEE--------eccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeE
Q 040307 243 FPTNPVVVLSKHEGSVNGIS--------WAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEIN 314 (339)
Q Consensus 243 ~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 314 (339)
. ++.. .+..|...+..++ |+|+| .++++++.|+.+++|++ ++ ... ...+.|.
T Consensus 227 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~-------------~~~--~~~~~v~ 286 (582)
T 3o4h_A 227 D-GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GE-------------RVE--APQGNHG 286 (582)
T ss_dssp T-CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TE-------------EEC--CCSSEEE
T ss_pred C-CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CC-------------eec--cCCCceE
Confidence 6 4444 6777777777777 99999 79999999999999999 33 121 2346788
Q ss_pred EEEecCCCCceEEEecCCe
Q 040307 315 VVRWSPLELDWIAIAFVNK 333 (339)
Q Consensus 315 ~~~~~p~~~~l~~~~~d~~ 333 (339)
+++|+ +++.+++++.+..
T Consensus 287 ~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 287 RVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp EEEEE-TTEEEEEEEETTE
T ss_pred EEEec-CCEEEEEEcCCCC
Confidence 99999 8877777666644
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2e-21 Score=163.04 Aligned_cols=234 Identities=9% Similarity=-0.021 Sum_probs=164.7
Q ss_pred EEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECC
Q 040307 78 AFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDID 154 (339)
Q Consensus 78 ~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~ 154 (339)
.|.+++. .++++++ + .|.+||..+++ ....+..+. ..+ .++|+| +++++++++. ++.|.+||+.
T Consensus 4 ~~~~~~~----~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~-----~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 70 (331)
T 3u4y_A 4 MFQTTSN----FGIVVEQHLRRISFFSTDTLE--ILNQITLGY-----DFV-DTAITS-DCSNVVVTSDFCQTLVQIETQ 70 (331)
T ss_dssp ---CCCC----EEEEEEGGGTEEEEEETTTCC--EEEEEECCC-----CEE-EEEECS-SSCEEEEEESTTCEEEEEECS
T ss_pred eEcCCCC----EEEEEecCCCeEEEEeCcccc--eeeeEEccC-----Ccc-eEEEcC-CCCEEEEEeCCCCeEEEEECC
Confidence 3555552 5566665 3 99999999887 444444433 556 999998 8886666555 8999999999
Q ss_pred CCee-eeeeeccCCceeEEEec-CCcEEEEEeCCC---cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307 155 REIL-ETQLVAHDREVYDISWG-GFNVFASVSGDC---SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV 229 (339)
Q Consensus 155 ~~~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 229 (339)
+++. ...+..+..+..+++|+ ++++++++..++ .|.+||+.+++....+.. ......++|+| ++++++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~sp-dg~~l~~~ 145 (331)
T 3u4y_A 71 LEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAISP-NGNGLILI 145 (331)
T ss_dssp SSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEECT-TSSCEEEE
T ss_pred CCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEECC-CCCEEEEE
Confidence 9887 66776666666559999 788888555443 899999998875444332 24578999999 78777776
Q ss_pred eeCCCe-EEEEecCCCCCce---EEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307 230 GMDSNK-VVVLDIRFPTNPV---VVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305 (339)
Q Consensus 230 ~~d~~~-i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (339)
+.+... +.+|++...+... ............++|+|++..+++++..++.|.+||+...+ ...+..
T Consensus 146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~----------~~~~~~ 215 (331)
T 3u4y_A 146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE----------NITLLN 215 (331)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT----------SCEEEE
T ss_pred ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc----------ccceee
Confidence 666555 9999998644321 12223345689999999994345555678999999998876 101133
Q ss_pred eecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307 306 CYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 306 ~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v 339 (339)
.......+..++|+|+|+++++++ .++.|.+|++
T Consensus 216 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 216 AVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred eccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 344556788999999999776654 5778999874
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=2.7e-22 Score=174.01 Aligned_cols=204 Identities=12% Similarity=0.102 Sum_probs=148.8
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcc--------eeEEEeecCCCccCCCCEEEEEEcCCCCCEEE--
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRT--------ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVA-- 140 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-- 140 (339)
..++.+++++++ .++++++. .+++|+...... .............+...|++++|+| ++++|+
T Consensus 37 ~~~n~lavs~~~-----~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKY-----GLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTT-----TEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred CCccEEEEecCC-----CEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEE
Confidence 458999999998 78888774 888887642110 0111110000001126799999998 899999
Q ss_pred --EEeCCCeEEEEECCCC--------ee---eeeeeccCCceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEe
Q 040307 141 --TCSVDTTCVIWDIDRE--------IL---ETQLVAHDREVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYE 205 (339)
Q Consensus 141 --~~~~d~~v~i~d~~~~--------~~---~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 205 (339)
+++.|+.|++||++++ +. +..+.+|...|.+++|+ + +++|++++.||+|++||+++...... ..
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~-~~ 189 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA-TL 189 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE-EE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee-cc
Confidence 7889999999998654 21 34556799999999999 4 78999999999999999998853322 22
Q ss_pred CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-------CCCeeEEEeccCCCCeEEE-EeCC
Q 040307 206 NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-------EGSVNGISWAPLYGRRLCS-VADD 277 (339)
Q Consensus 206 ~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~~-~~~d 277 (339)
.|...+.+++|+| ++++|++|+.|+. |++||++ ......+..| ...|.+++|++++ .++++ .+.|
T Consensus 190 --~~~~~v~~v~wsp-dg~~lasgs~dg~-v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~d 262 (434)
T 2oit_A 190 --PSTVAVTSVCWSP-KGKQLAVGKQNGT-VVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAAD 262 (434)
T ss_dssp --CGGGCEEEEEECT-TSSCEEEEETTSC-EEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETT
T ss_pred --CCCCceeEEEEcC-CCCEEEEEcCCCc-EEEEccC--CcccccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCC
Confidence 2567899999999 7999999999999 9999998 3344444433 2379999999987 45543 4455
Q ss_pred Cc------EEEEEecCCC
Q 040307 278 SR------ALIWEVVGPG 289 (339)
Q Consensus 278 g~------v~iwd~~~~~ 289 (339)
|. +++|++...+
T Consensus 263 g~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKE 280 (434)
T ss_dssp CCSSSCCEEEEEECCCTT
T ss_pred CccCCCCceEEEEeccCC
Confidence 43 8999998754
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=2.2e-20 Score=158.64 Aligned_cols=279 Identities=10% Similarity=-0.013 Sum_probs=177.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
+...+..++|+|+ +++|++++..++.++.|.+|+++..++........ ..+...+..+++ ++ ++|++++
T Consensus 48 ~~~~p~~l~~spd---g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg-----~~l~~~~ 116 (361)
T 3scy_A 48 EVANPSYLIPSAD---GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NG-----KNIVTAN 116 (361)
T ss_dssp ECSCCCSEEECTT---SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CS-----SEEEEEE
T ss_pred cCCCCceEEECCC---CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CC-----CEEEEEE
Confidence 5667888999999 99999988211123899999998876655442222 234556778888 66 5555443
Q ss_pred --C-cEEEEeecCCc-ceeEEEeecCCC------ccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCee------
Q 040307 96 --D-SLRLWEIHDDR-TELKSLLNSNKT------SEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREIL------ 158 (339)
Q Consensus 96 --~-~i~iw~~~~~~-~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~------ 158 (339)
+ .|.+|++.... .........+.. ......+.+++|+| +++++++++ .++.|.+|++.....
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 3 99999997543 111111111110 01113468899998 888666555 488999998875431
Q ss_pred e-------eeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCccee--eEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 159 E-------TQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERST--IIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 159 ~-------~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
+ .........+..++|+ +++++++++ .++.|.+||+.++.... .+...+.+......++|+| ++++|+
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~ 274 (361)
T 3scy_A 196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLY 274 (361)
T ss_dssp CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEE
T ss_pred eeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEE
Confidence 1 1112344567899999 787777666 68999999998664321 1222222334578999998 889887
Q ss_pred EEeeC--CCeEEEEecCCC-CC--ceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcc
Q 040307 228 TVGMD--SNKVVVLDIRFP-TN--PVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDV 301 (339)
Q Consensus 228 ~~~~d--~~~i~i~d~~~~-~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~ 301 (339)
++..+ +. |.+|++... +. .+..+.. ...+..++|+|++ ++|++++ .++.|.+|++..... .+
T Consensus 275 v~~~~~~~~-i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g---------~~ 342 (361)
T 3scy_A 275 ASNRLKADG-VAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATG---------LL 342 (361)
T ss_dssp EEECSSSCE-EEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTC---------CE
T ss_pred EECCCCCCE-EEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCC---------cE
Confidence 77765 55 999999631 22 3334444 5578899999999 5777766 678999987764330 01
Q ss_pred cceeeecccceeEEEEec
Q 040307 302 EPELCYQSMAEINVVRWS 319 (339)
Q Consensus 302 ~~~~~~~~~~~i~~~~~~ 319 (339)
.......+...+.++.|.
T Consensus 343 ~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 343 TDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EECSCCEECSSEEEEEEE
T ss_pred eecceeeeCCCCeEEEEc
Confidence 111111234568888886
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.8e-21 Score=164.23 Aligned_cols=278 Identities=10% Similarity=0.045 Sum_probs=175.9
Q ss_pred EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEeC-C-cE
Q 040307 22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATSG-D-SL 98 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~~-~-~i 98 (339)
.++++++ +.++++++ .++.|.+|+.. +++... .+..+....+..++|+|++ + +++++. + .|
T Consensus 4 g~~~~~~---~~~~v~~~----~~~~v~~~d~~--~~~~~~--~~~~~~~~~~~~~~~s~dg-----~~~~v~~~~~~~i 67 (349)
T 1jmx_B 4 GPALKAG---HEYMIVTN----YPNNLHVVDVA--SDTVYK--SCVMPDKFGPGTAMMAPDN-----RTAYVLNNHYGDI 67 (349)
T ss_dssp CCCCCTT---CEEEEEEE----TTTEEEEEETT--TTEEEE--EEECSSCCSSCEEEECTTS-----SEEEEEETTTTEE
T ss_pred cccccCC---CEEEEEeC----CCCeEEEEECC--CCcEEE--EEecCCCCCCceeEECCCC-----CEEEEEeCCCCcE
Confidence 4567788 88899988 79999997654 334333 2222222368899999999 5 445554 3 99
Q ss_pred EEEeecCCcceeEEEeecCCC-ccCCCCEEEEEEcCCCCCEEEEEeCC------------CeEEEEECCCCee---eeee
Q 040307 99 RLWEIHDDRTELKSLLNSNKT-SEFSSAITSFDWAGFDTRRVATCSVD------------TTCVIWDIDREIL---ETQL 162 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d------------~~v~i~d~~~~~~---~~~~ 162 (339)
.+||+.+++ ....+..... ......+..++|+| ++++|++++.+ +.|.+||+.+++. +..+
T Consensus 68 ~~~d~~t~~--~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 144 (349)
T 1jmx_B 68 YGIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 144 (349)
T ss_dssp EEEETTTTE--EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred EEEeCCCCc--EEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence 999998876 4444442210 00002367899998 99999988865 8999999988543 2333
Q ss_pred eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC-C----------------CC----CeEEEEEec
Q 040307 163 VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV-Q----------------DC----PLLRLEWNK 220 (339)
Q Consensus 163 ~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~----------------~~----~v~~~~~~p 220 (339)
. +...+.+++|+ +++ +++++ +.|.+||+.+++....+..... . .. ....+++++
T Consensus 145 ~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (349)
T 1jmx_B 145 P-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 220 (349)
T ss_dssp E-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred c-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence 3 34468899999 677 55554 3499999988774443321100 0 00 233455554
Q ss_pred CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc-CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCC
Q 040307 221 ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP-LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSG 299 (339)
Q Consensus 221 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 299 (339)
++............+..+|..........+..+...+..++|+| ++ ++++++ ++.|.+||+.+.+
T Consensus 221 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~---------- 286 (349)
T 1jmx_B 221 -DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRK---------- 286 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTE----------
T ss_pred -CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCe----------
Confidence 22111000001110233555442222223333566788999999 98 577777 8899999998866
Q ss_pred cccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 300 DVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..........+.+++|+|+++.|++++.++.|++|++
T Consensus 287 ---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 287 ---LIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp ---EEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred ---EEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEec
Confidence 3333334456789999999998888888999999985
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=1e-20 Score=160.88 Aligned_cols=281 Identities=9% Similarity=0.034 Sum_probs=180.5
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeec-CCccee
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIH-DDRTEL 110 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~-~~~~~~ 110 (339)
..|++|++. .++.|.+|+++..++.+.............+..++|+|++ ++|++++. .|.+|+++ +++...
T Consensus 3 ~~~~vg~~~--~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg-----~~l~~~~~~~v~~~~~~~~g~~~~ 75 (365)
T 1jof_A 3 HHLMIGTWT--PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-----KNIYGAAMKKWSSFAVKSPTEIVH 75 (365)
T ss_dssp EEEEEEESS--SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-----SEEEEEEBTEEEEEEEEETTEEEE
T ss_pred EEEEEEEcc--CCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC-----CEEEEEccceEEEEEECCCCCEEE
Confidence 356777731 1257999888877776654222212344578899999999 77776664 99999997 665222
Q ss_pred EEEeecCCCccCCCCEEEEEEcCCCCCE--EEEEe-------------CCCeEEEEECC-CCeeeeeee----ccCCcee
Q 040307 111 KSLLNSNKTSEFSSAITSFDWAGFDTRR--VATCS-------------VDTTCVIWDID-REILETQLV----AHDREVY 170 (339)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~--l~~~~-------------~d~~v~i~d~~-~~~~~~~~~----~~~~~v~ 170 (339)
......+ .....++|+| ++++ ++++. .++.+.+|++. +++....+. .+...+.
T Consensus 76 ~~~~~~~------g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (365)
T 1jof_A 76 EASHPIG------GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH 148 (365)
T ss_dssp EEEEECC------SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred eeEeecC------CCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence 2121111 1244588998 8884 44553 68999999997 455443333 2456789
Q ss_pred EEEec-CCcEEEEEeC-CCcEEEEECC-CCcceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC-C
Q 040307 171 DISWG-GFNVFASVSG-DCSVRVFDLR-DKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP-T 245 (339)
Q Consensus 171 ~~~~~-~~~~l~~~~~-d~~i~i~d~~-~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~-~ 245 (339)
+++|+ ++++++++.. ++.|++||+. +++.... ....+.+...+..++|+| +++++++++.....|.+|++... +
T Consensus 149 ~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g 227 (365)
T 1jof_A 149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCC
Confidence 99999 7887777654 6799999998 5543211 122111245689999998 88888887764334999987531 2
Q ss_pred Cce---EEEec-------CCC------CeeEEE-eccCCCCeEEEEeC-CC-----cEEEEEecCCCCCCCCCCCCCccc
Q 040307 246 NPV---VVLSK-------HEG------SVNGIS-WAPLYGRRLCSVAD-DS-----RALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 246 ~~~---~~~~~-------~~~------~v~~~~-~~p~~~~~l~~~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
+.. ..+.. |.. .+..++ |+|+| ++|+++.. ++ .|.+|++.... .+.
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g----------~~~ 296 (365)
T 1jof_A 228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCG----------SIE 296 (365)
T ss_dssp CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTS----------CEE
T ss_pred cEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCC----------CEE
Confidence 321 12221 121 488999 99999 57766553 23 89999997422 011
Q ss_pred cee--eecccceeEEEEecC---CCCceEEEec-CCeEEEEeC
Q 040307 303 PEL--CYQSMAEINVVRWSP---LELDWIAIAF-VNKLQLLKV 339 (339)
Q Consensus 303 ~~~--~~~~~~~i~~~~~~p---~~~~l~~~~~-d~~v~~w~v 339 (339)
... ...+...+..++|+| +|++|++++. ++.|++|++
T Consensus 297 ~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 111 222445577899999 8988887775 589999974
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=1.4e-20 Score=158.97 Aligned_cols=258 Identities=11% Similarity=0.065 Sum_probs=167.7
Q ss_pred eeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 14 YMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 14 ~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..+...+..++|+|+ ++ |++++. .+.++.|.+|+++. +........ ..+...+..++|+|++ ++|++
T Consensus 36 ~~~~~~p~~~a~spd---g~-l~~~~~-~~~~~~v~~~~~~~--g~~~~~~~~-~~~~~~p~~~a~spdg-----~~l~~ 102 (347)
T 3hfq_A 36 LAATQNPTYLALSAK---DC-LYSVDK-EDDEGGIAAWQIDG--QTAHKLNTV-VAPGTPPAYVAVDEAR-----QLVYS 102 (347)
T ss_dssp EEECSCCCCEEECTT---CE-EEEEEE-ETTEEEEEEEEEET--TEEEEEEEE-EEESCCCSEEEEETTT-----TEEEE
T ss_pred eeccCCcceEEEccC---Ce-EEEEEe-cCCCceEEEEEecC--CcEEEeeee-ecCCCCCEEEEECCCC-----CEEEE
Confidence 344567888999999 88 555541 01268999988843 333221122 3467789999999999 76665
Q ss_pred eC--C-cEEEEeecC-CcceeEEEeecCCCc----cCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-CCeee--eee
Q 040307 94 SG--D-SLRLWEIHD-DRTELKSLLNSNKTS----EFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID-REILE--TQL 162 (339)
Q Consensus 94 ~~--~-~i~iw~~~~-~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~--~~~ 162 (339)
++ + .|.+|++.. +....+..+...... .....+.+++|+| +++++++...++.|.+|++. +++.. ..+
T Consensus 103 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 103 ANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred EeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence 54 3 899999964 333333333221100 0113588999998 88877777778999999998 45422 222
Q ss_pred ec-cCCceeEEEec-CCcEEEE-EeCCCcEEEEECCC--Cccee--eEEeCCC---CCCCeEEEEEecCCCCeEEEEee-
Q 040307 163 VA-HDREVYDISWG-GFNVFAS-VSGDCSVRVFDLRD--KERST--IIYENPV---QDCPLLRLEWNKADPRFMATVGM- 231 (339)
Q Consensus 163 ~~-~~~~v~~~~~~-~~~~l~~-~~~d~~i~i~d~~~--~~~~~--~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~- 231 (339)
.. ....+..++|+ +++++++ ...++.|.+|++.. ++... .....+. ....+..++|+| ++++|+++..
T Consensus 182 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~ 260 (347)
T 3hfq_A 182 TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRG 260 (347)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEET
T ss_pred EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCC
Confidence 22 23367889999 7775554 56788999999875 33111 1111110 013588899998 8887765554
Q ss_pred CCCeEEEEecCCCC--CceEEEecCCCCeeEEEeccCCCCeEEEEeC-CCcEEEEEecCC
Q 040307 232 DSNKVVVLDIRFPT--NPVVVLSKHEGSVNGISWAPLYGRRLCSVAD-DSRALIWEVVGP 288 (339)
Q Consensus 232 d~~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~v~iwd~~~~ 288 (339)
++. |.+||+...+ ..+..+..+...+..++|+|++ ++|++++. ++.|.+|+++..
T Consensus 261 ~~~-v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 261 YNT-LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLT 318 (347)
T ss_dssp TTE-EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTT
T ss_pred CCE-EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCC
Confidence 565 9999987422 3345555666678999999999 57777665 589999977643
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=6.9e-21 Score=161.00 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=172.4
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeC--------C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEE
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSG--------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRV 139 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~--------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 139 (339)
.....+..++|+|++ +.+++++ + .|.+||..+++ ....+... ..+..++|+| +++++
T Consensus 38 ~~~~~~~~~~~s~dg-----~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~------~~~~~~~~s~-dg~~l 103 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQE-----NALWLATSQSRKLDKGGVVYRLDPVTLE--VTQAIHND------LKPFGATINN-TTQTL 103 (353)
T ss_dssp EEESSEEEEEEETTT-----TEEEEEECCCTTTEESEEEEEECTTTCC--EEEEEEES------SCCCSEEEET-TTTEE
T ss_pred hhccCccceEECCCC-----CEEEEEcCCCcCCCCCccEEEEcCCCCe--EEEEEecC------CCcceEEECC-CCCEE
Confidence 345668899999999 5555544 3 79999999887 55555543 3467899998 77754
Q ss_pred -EEEeCCCeEEEEECCCCeeeeeeeccCCc---------eeEEEec-CCcEEEEEe--CCCcEEEEECCCCcceeeEEeC
Q 040307 140 -ATCSVDTTCVIWDIDREILETQLVAHDRE---------VYDISWG-GFNVFASVS--GDCSVRVFDLRDKERSTIIYEN 206 (339)
Q Consensus 140 -~~~~~d~~v~i~d~~~~~~~~~~~~~~~~---------v~~~~~~-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~ 206 (339)
++...++.|.+||+.+++.+..+..+... +.+++|+ +++.+++++ .++.|.+||+.+.+....+. .
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~ 182 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-N 182 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-C
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-C
Confidence 55556799999999999887777654322 6889999 677666665 47889999999887544432 1
Q ss_pred CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec----CCCCeeEEEeccCCCCeEEEEe-CCCcEE
Q 040307 207 PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK----HEGSVNGISWAPLYGRRLCSVA-DDSRAL 281 (339)
Q Consensus 207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~-~dg~v~ 281 (339)
+...+..++|+| +++.+++++.++. |.+||... .+.+..+.. +...+..++|+|++. .+++++ .++.|.
T Consensus 183 --~~~~~~~~~~s~-dg~~l~~~~~~~~-i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 183 --TGKMSTGLALDS-EGKRLYTTNADGE-LITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQ-RAFITDSKAAEVL 256 (353)
T ss_dssp --CCTTCCCCEEET-TTTEEEEECTTSE-EEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTT-EEEEEESSSSEEE
T ss_pred --CCCccceEEECC-CCCEEEEEcCCCe-EEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCC-EEEEEeCCCCEEE
Confidence 234578899998 8888888888887 99999987 555555543 455688899999995 555544 569999
Q ss_pred EEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEe-cCCeEEEEeC
Q 040307 282 IWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 282 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~d~~v~~w~v 339 (339)
+||+...+ ......... ...++|+|+++.+++++ .++.|.+|++
T Consensus 257 ~~d~~~~~-------------~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 257 VVDTRNGN-------------ILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp EEETTTCC-------------EEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEECCCCc-------------EEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 99998876 332222222 25799999998766655 7899999974
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=1.1e-20 Score=158.61 Aligned_cols=247 Identities=9% Similarity=-0.025 Sum_probs=173.5
Q ss_pred CCceeeeeeccC---CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC----CCCceEEEE
Q 040307 7 KKPGVHTYMAQW---PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH----PYTPTNIAF 79 (339)
Q Consensus 7 ~~~~~~~~~~~~---~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~ 79 (339)
+++.+..+.... .+..++|+|+ ++.++++.. .++.|.+|+... .+... .+...+ ...+..++|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~v~~~---~~~~v~~~d~~~--~~~~~--~~~~~~~~~~~~~~~~~~~ 89 (337)
T 1pby_B 20 KMAVDKVITIADAGPTPMVPMVAPG---GRIAYATVN---KSESLVKIDLVT--GETLG--RIDLSTPEERVKSLFGAAL 89 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTT---SSEEEEEET---TTTEEEEEETTT--CCEEE--EEECCBTTEEEECTTCEEE
T ss_pred CCcEEEEEEcCCCCCCccceEEcCC---CCEEEEEeC---CCCeEEEEECCC--CCeEe--eEEcCCcccccccccceEE
Confidence 345566666665 6899999999 876655442 578999977653 33332 222222 226889999
Q ss_pred cCCCCCCCCCeEEEe-------------CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 80 FPSEETLNPDIVATS-------------GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 80 ~~~~~~~~~~~la~~-------------~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
+|++ +.|+++ .+ .|.+||+.+++ ....+... ..+.+++|+| ++++|+++ +
T Consensus 90 s~dg-----~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~------~~~~~~~~s~-dg~~l~~~--~ 153 (337)
T 1pby_B 90 SPDG-----KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFEAP------RQITMLAWAR-DGSKLYGL--G 153 (337)
T ss_dssp CTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEECC------SSCCCEEECT-TSSCEEEE--S
T ss_pred CCCC-----CEEEEEecccccccccccccCceEEEEECCCCc--EEEEEeCC------CCcceeEECC-CCCEEEEe--C
Confidence 9999 677666 34 99999998876 44555432 4577899998 88888887 6
Q ss_pred CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC-C-----------------------cEEEEECCCCcce
Q 040307 146 TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD-C-----------------------SVRVFDLRDKERS 200 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-~-----------------------~i~i~d~~~~~~~ 200 (339)
+.|.+||+.+++....+..+.. ...+.|+ ++..++..+.. + .|.+||+.+.+..
T Consensus 154 ~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 154 RDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 8999999999987776654331 1123566 44444333322 2 4789999988754
Q ss_pred eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcE
Q 040307 201 TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRA 280 (339)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 280 (339)
..... .+...+..++|+| ++++++++ ++. |.+||+.. .+.+..+.. ...+.+++|+|++ ++|++++.++.|
T Consensus 233 ~~~~~--~~~~~~~~~~~s~-dg~~l~~~--~~~-v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~i 303 (337)
T 1pby_B 233 MREVR--IMDVFYFSTAVNP-AKTRAFGA--YNV-LESFDLEK-NASIKRVPL-PHSYYSVNVSTDG-STVWLGGALGDL 303 (337)
T ss_dssp EEEEE--ECSSCEEEEEECT-TSSEEEEE--ESE-EEEEETTT-TEEEEEEEC-SSCCCEEEECTTS-CEEEEESBSSEE
T ss_pred EeecC--CCCCceeeEEECC-CCCEEEEe--CCe-EEEEECCC-CcCcceecC-CCceeeEEECCCC-CEEEEEcCCCcE
Confidence 22222 2446788999998 88888887 566 99999986 455555554 4568899999999 588888889999
Q ss_pred EEEEecCCC
Q 040307 281 LIWEVVGPG 289 (339)
Q Consensus 281 ~iwd~~~~~ 289 (339)
.+||+.+.+
T Consensus 304 ~v~d~~~~~ 312 (337)
T 1pby_B 304 AAYDAETLE 312 (337)
T ss_dssp EEEETTTCC
T ss_pred EEEECcCCc
Confidence 999998877
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=1.3e-20 Score=161.56 Aligned_cols=276 Identities=8% Similarity=-0.013 Sum_probs=177.2
Q ss_pred EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEE
Q 040307 23 VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRL 100 (339)
Q Consensus 23 i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~i 100 (339)
.+|||| +++||+++. .++...||.++..+++... +...+...+..+.|+|++ +.|+.++ + .|++
T Consensus 41 ~~~SpD---g~~l~~~~~---~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg-----~~l~~~~~~~~l~~ 106 (388)
T 3pe7_A 41 KCFTRD---GSKLLFGGA---FDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDD-----DALFYVKDGRNLMR 106 (388)
T ss_dssp CCBCTT---SCEEEEEEC---TTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTS-----SEEEEEETTTEEEE
T ss_pred ccCCCC---CCEEEEEEc---CCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCC-----CEEEEEeCCCeEEE
Confidence 789999 999999882 2676556556666665543 113455555678899999 7777766 4 8999
Q ss_pred EeecCCcceeEEEeecCCCccCCCCEEEEE--EcCCCCCEEEEE----------------------eCCCeEEEEECCCC
Q 040307 101 WEIHDDRTELKSLLNSNKTSEFSSAITSFD--WAGFDTRRVATC----------------------SVDTTCVIWDIDRE 156 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~----------------------~~d~~v~i~d~~~~ 156 (339)
||+.+++ ....+..+. ..+.... ++| ++.+++.. ..+..|.+||+.++
T Consensus 107 ~d~~~g~--~~~~~~~~~-----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 107 VDLATLE--ENVVYQVPA-----EWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp EETTTCC--EEEEEECCT-----TEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred EECCCCc--ceeeeechh-----hcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 9999987 333333333 3333333 477 88887743 24478999999988
Q ss_pred eeeeeeeccCCceeEEEecC--CcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307 157 ILETQLVAHDREVYDISWGG--FNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 157 ~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
+.. .+..+...+..++|+| ++.|+.+..+ ..|.++|+........ ... .....+..++|+| +|+.|+.
T Consensus 179 ~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~-~~~~~~~~~~~sp-dg~~l~~ 254 (388)
T 3pe7_A 179 EST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV-KTH-AEGESCTHEFWVP-DGSALVY 254 (388)
T ss_dssp CEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES-CCC-CTTEEEEEEEECT-TSSCEEE
T ss_pred ceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe-eeC-CCCcccccceECC-CCCEEEE
Confidence 644 4445667789999996 6677776653 3788888776543222 221 1113577889999 7877655
Q ss_pred EeeC-CC---eEEEEecCCCCC-ceEEEecCCC---CeeEEEeccCCCCeEEEE---------eCCCcEEEEEecCCCCC
Q 040307 229 VGMD-SN---KVVVLDIRFPTN-PVVVLSKHEG---SVNGISWAPLYGRRLCSV---------ADDSRALIWEVVGPGYR 291 (339)
Q Consensus 229 ~~~d-~~---~i~i~d~~~~~~-~~~~~~~~~~---~v~~~~~~p~~~~~l~~~---------~~dg~v~iwd~~~~~~~ 291 (339)
.+.. +. .|++||+..... .+..+..+.. ....++|+|+|. .|+.. ..+..|++||+....
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-- 331 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS-DAPVDVQDDSGYKIENDPFLYVFNMKNGT-- 331 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC-CC------------CCCCEEEEEETTTTE--
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC-cceeEeeeccccccCCCCEEEEEeccCCc--
Confidence 4443 32 299999986331 2222222100 122347999995 55533 456689999998866
Q ss_pred CCCCCCCCcccceeeecccc-----------eeEEEEecCCCCceEEEe-cCCeEEEEe
Q 040307 292 SGNGGPSGDVEPELCYQSMA-----------EINVVRWSPLELDWIAIA-FVNKLQLLK 338 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~p~~~~l~~~~-~d~~v~~w~ 338 (339)
...+..+.. .+..++|+|+|+.|+.++ .++...||.
T Consensus 332 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 332 -----------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp -----------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred -----------eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 333333443 478899999999877655 577777775
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=178.70 Aligned_cols=276 Identities=10% Similarity=0.030 Sum_probs=180.4
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC---CceEEEEcCCCCCCCCCeEEEeC-
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY---TPTNIAFFPSEETLNPDIVATSG- 95 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~~~~~la~~~- 95 (339)
-.+++|+|+ +++++.+. ++.|++|+.... +... .+ ..+.. .+.+++||||+ +.|+.++
T Consensus 18 ~~~~~~s~d---g~~~~~~~-----d~~i~~~~~~~g--~~~~--~~-~~~~~~~~~~~~~~~SpDg-----~~la~~~~ 79 (719)
T 1z68_A 18 TFFPNWISG---QEYLHQSA-----DNNIVLYNIETG--QSYT--IL-SNRTMKSVNASNYGLSPDR-----QFVYLESD 79 (719)
T ss_dssp CCCCEESSS---SEEEEECT-----TSCEEEEESSSC--CEEE--EE-CHHHHHTTTCSEEEECTTS-----SEEEEEEE
T ss_pred CCccEECCC---CeEEEEcC-----CCCEEEEEcCCC--cEEE--EE-ccccccccceeeEEECCCC-----CeEEEEec
Confidence 348899999 87666554 899999776543 3332 11 22222 48999999999 7777653
Q ss_pred ---------C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-ec
Q 040307 96 ---------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VA 164 (339)
Q Consensus 96 ---------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~ 164 (339)
+ .|++||+++++......+. ..+..++||| +++.|+++. ++.|++||+.+++..... .+
T Consensus 80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--------~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~ 149 (719)
T 1z68_A 80 YSKLWRYSYTATYYIYDLSNGEFVRGNELP--------RPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNG 149 (719)
T ss_dssp EEECSSSCEEEEEEEEETTTTEECCSSCCC--------SSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCC
T ss_pred CceeEEeecceEEEEEECCCCccccceecC--------cccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCC
Confidence 3 8999999888620001221 4578899999 999999986 789999999887754432 22
Q ss_pred cCCce-----------------eEEEec-CCcEEEEEeCCC----------------------------------cEEEE
Q 040307 165 HDREV-----------------YDISWG-GFNVFASVSGDC----------------------------------SVRVF 192 (339)
Q Consensus 165 ~~~~v-----------------~~~~~~-~~~~l~~~~~d~----------------------------------~i~i~ 192 (339)
+...+ .+++|+ +++.|++++.|. .|++|
T Consensus 150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 22222 489999 789999887652 78899
Q ss_pred ECCCCcce--eeEEe---CCCCCCCeEEEEEecCCCCeEEEEeeCC---CeEEEEe----cCCCCCceEEE----ecCCC
Q 040307 193 DLRDKERS--TIIYE---NPVQDCPLLRLEWNKADPRFMATVGMDS---NKVVVLD----IRFPTNPVVVL----SKHEG 256 (339)
Q Consensus 193 d~~~~~~~--~~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~~d~---~~i~i~d----~~~~~~~~~~~----~~~~~ 256 (339)
|+.+++.. ..+.. ...+...+.+++|+| +++++++..... ..|.+|| ... ++....+ ..|..
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~ 307 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTG 307 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSS
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCc
Confidence 99887632 11110 012556789999999 677776644322 1388899 654 3333333 45677
Q ss_pred Cee-----EEEeccCCCCeEE-EEeCCCc--EEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEE
Q 040307 257 SVN-----GISWAPLYGRRLC-SVADDSR--ALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 257 ~v~-----~~~~~p~~~~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~ 328 (339)
.+. .+.|+|+|..+++ +...+|. |.+||+.... ...+..+...+..+.++ +++.++..
T Consensus 308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-------------~~~lt~~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-------------AIQITSGKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-------------CEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-------------eEecccCceEEEEEEEE-eCCEEEEE
Confidence 776 8999999953333 3445665 5555554433 33333445567777777 77777766
Q ss_pred ecC-----CeEEEEeC
Q 040307 329 AFV-----NKLQLLKV 339 (339)
Q Consensus 329 ~~d-----~~v~~w~v 339 (339)
+.+ +..++|.+
T Consensus 374 ~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRI 389 (719)
T ss_dssp ESCGGGCTTCBEEEEE
T ss_pred EecCCCCCceEEEEEE
Confidence 654 77888863
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=6e-21 Score=172.39 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=161.7
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC--
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-- 144 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 144 (339)
+..+|++++|+||| +.||.++ + +++||++++++ .......+. ..+..+.|+| + +++++++.
T Consensus 20 ~~~~~~~~~~~~DG-----~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~-----~~~~~~~~sp-d-~~l~~~~~~~ 85 (582)
T 3o4h_A 20 IAVEKYSLQGVVDG-----DKLLVVGFSEGSVNAYLYDGGE--TVKLNREPI-----NSVLDPHYGV-G-RVILVRDVSK 85 (582)
T ss_dssp HHSCEEEEEEEETT-----TEEEEEEEETTEEEEEEEETTE--EEECCSSCC-----SEECEECTTC-S-EEEEEEECST
T ss_pred hccchheeecCCCC-----CeEEEEEccCCceeEEEEcCCC--cEeeecccc-----cccccccCCC-C-eEEEEeccCC
Confidence 35579999999999 7888765 4 99999997664 333333322 4788999998 7 77777765
Q ss_pred -CCeEEEEECCC---CeeeeeeeccCCceeEEEec-CC-cEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEE
Q 040307 145 -DTTCVIWDIDR---EILETQLVAHDREVYDISWG-GF-NVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 145 -d~~v~i~d~~~---~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (339)
+....+|.+.. +... .+... ..+...+|+ ++ ..+++.+.++.+.+||+.+++........ . .+++|
T Consensus 86 g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~----~--~~~~~ 157 (582)
T 3o4h_A 86 GAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP----G--FGFVS 157 (582)
T ss_dssp TSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES----S--CEEEE
T ss_pred CCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC----C--ceEEE
Confidence 45555655432 2222 33222 223455666 44 34444445556669999887644333222 1 78999
Q ss_pred ecCCCCeEEEEeeC----CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC--cEEEEEecCCCCCC
Q 040307 219 NKADPRFMATVGMD----SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS--RALIWEVVGPGYRS 292 (339)
Q Consensus 219 ~p~~~~~l~~~~~d----~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~v~iwd~~~~~~~~ 292 (339)
+| +|+.|++++.+ .. |++||+.. ++ ...+..|...+..++|+||| +.|+++..++ .|++||+..++
T Consensus 158 sp-DG~~la~~~~~~~~~~~-i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~--- 229 (582)
T 3o4h_A 158 DI-RGDLIAGLGFFGGGRVS-LFTSNLSS-GG-LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGS--- 229 (582)
T ss_dssp EE-ETTEEEEEEEEETTEEE-EEEEETTT-CC-CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCC---
T ss_pred CC-CCCEEEEEEEcCCCCeE-EEEEcCCC-CC-ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCc---
Confidence 99 99999988777 55 99999876 33 45778888899999999999 5888888888 89999998876
Q ss_pred CCCCCCCcccceeeecccceeEEEE--------ecCCCCceEEEecCCeEEEEeC
Q 040307 293 GNGGPSGDVEPELCYQSMAEINVVR--------WSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~i~~~~--------~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+.....+...+..++ |+|+|..+++++.|+.+++|++
T Consensus 230 ----------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 ----------VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ----------EEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ----------EEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 334445555666666 9999965667889999999975
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=2.1e-20 Score=173.08 Aligned_cols=288 Identities=10% Similarity=0.049 Sum_probs=182.7
Q ss_pred CeeEEEeeecCCcccEEEEeeecc-----ccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLE-----DYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.+.+++|||| |++||+++... ..++.|++|+++. ++... .......+..++||||+ +.||.
T Consensus 61 ~~~~~~~SpD---g~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~----~~~l~~~~~~~~~SPDG-----~~la~ 126 (719)
T 1z68_A 61 NASNYGLSPD---RQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVR----GNELPRPIQYLCWSPVG-----SKLAY 126 (719)
T ss_dssp TCSEEEECTT---SSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECC----SSCCCSSBCCEEECSST-----TCEEE
T ss_pred ceeeEEECCC---CCeEEEEecCceeEEeecceEEEEEECCC--Ccccc----ceecCcccccceECCCC-----CEEEE
Confidence 4899999999 99999987200 0158899976653 33310 01113568999999999 78888
Q ss_pred eCC-cEEEEeecCCcceeEEEe-ecCCCc---cC---------CCCEEEEEEcCCCCCEEEEEeCCC-------------
Q 040307 94 SGD-SLRLWEIHDDRTELKSLL-NSNKTS---EF---------SSAITSFDWAGFDTRRVATCSVDT------------- 146 (339)
Q Consensus 94 ~~~-~i~iw~~~~~~~~~~~~~-~~~~~~---~~---------~~~i~~~~~~~~~~~~l~~~~~d~------------- 146 (339)
+.+ .|++|++.+++ ..... .++... ++ .....+++|+| |++.|++++.|.
T Consensus 127 ~~~~~i~~~~~~~g~--~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~ 203 (719)
T 1z68_A 127 VYQNNIYLKQRPGDP--PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGD 203 (719)
T ss_dssp EETTEEEEESSTTSC--CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCS
T ss_pred EECCeEEEEeCCCCC--cEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCC
Confidence 877 99999998876 22221 222100 00 01124899999 999999987652
Q ss_pred ---------------------eEEEEECCCCeee--------eeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEE
Q 040307 147 ---------------------TCVIWDIDREILE--------TQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVF 192 (339)
Q Consensus 147 ---------------------~v~i~d~~~~~~~--------~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~ 192 (339)
.|++||+.+++.. ..+.+|...+..++|+ ++.++++.... ..|.+|
T Consensus 204 ~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~ 283 (719)
T 1z68_A 204 EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSIC 283 (719)
T ss_dssp SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEE
T ss_pred CCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEE
Confidence 7889999887642 1233577789999999 66666654332 248889
Q ss_pred E----CCCCcceeeEE---eCCCCCCCeE-----EEEEecCCCCeEEE--EeeCCC-eEEEEecCCCCCceEEEecCCCC
Q 040307 193 D----LRDKERSTIIY---ENPVQDCPLL-----RLEWNKADPRFMAT--VGMDSN-KVVVLDIRFPTNPVVVLSKHEGS 257 (339)
Q Consensus 193 d----~~~~~~~~~~~---~~~~~~~~v~-----~~~~~p~~~~~l~~--~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~ 257 (339)
| +.+++...... .. +...+. .++|+| +|+.|+. ...++. .|.+||+.. ++ ...+..+...
T Consensus 284 d~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~-~~-~~~lt~~~~~ 358 (719)
T 1z68_A 284 DFREDWQTWDCPKTQEHIEES--RTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTV-EN-AIQITSGKWE 358 (719)
T ss_dssp EECSSSSSEECCGGGEEEEEC--SSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCS-TT-CEECSCSSSC
T ss_pred cccCCCCCCceEEEEeccccc--CCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCC-Cc-eEecccCceE
Confidence 9 76665433331 22 344554 789998 7775544 334443 377777765 33 5566666667
Q ss_pred eeEEEeccCCCCeEEEEeC----CCcEEEEEecCCCCCCCCCCCCCcccceeee----cccceeEEEEecCCCCceEEE-
Q 040307 258 VNGISWAPLYGRRLCSVAD----DSRALIWEVVGPGYRSGNGGPSGDVEPELCY----QSMAEINVVRWSPLELDWIAI- 328 (339)
Q Consensus 258 v~~~~~~p~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~p~~~~l~~~- 328 (339)
+..+.++ ++..+++++.. ++..++|.+..... ..++..+. ++...+..+.|+|+++.++..
T Consensus 359 v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 359 AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY---------PPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS---------SCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC---------CCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 8888877 77444444444 48899999876320 00112111 255678899999999877743
Q ss_pred ecC--CeEEEEe
Q 040307 329 AFV--NKLQLLK 338 (339)
Q Consensus 329 ~~d--~~v~~w~ 338 (339)
+.. ..+.+|+
T Consensus 429 s~~~~p~~~l~d 440 (719)
T 1z68_A 429 YGPGIPISTLHD 440 (719)
T ss_dssp CCBSSCEEEEEC
T ss_pred CCCCCCeEEEEE
Confidence 332 3455654
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=2.7e-18 Score=146.01 Aligned_cols=246 Identities=7% Similarity=-0.019 Sum_probs=165.2
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC--eEEEe-
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD--IVATS- 94 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~--~la~~- 94 (339)
..+..++|+|+ +++|++++ .+ .|.+|+++. .+.... .......+.+.+++|+|++ + +++++
T Consensus 40 ~~~~~~a~spd---g~~l~~~~----~~-~v~~~~~~~-~g~~~~--~~~~~~~g~~~~~~~spdg-----~~l~~~~~~ 103 (365)
T 1jof_A 40 EPISWMTFDHE---RKNIYGAA----MK-KWSSFAVKS-PTEIVH--EASHPIGGHPRANDADTNT-----RAIFLLAAK 103 (365)
T ss_dssp CCCSEEEECTT---SSEEEEEE----BT-EEEEEEEEE-TTEEEE--EEEEECCSSGGGGCTTSCC-----EEEEEEECS
T ss_pred CCCcEEEECCC---CCEEEEEc----cc-eEEEEEECC-CCCEEE--eeEeecCCCCccEEECCCC-----CEEEEEEec
Confidence 46889999999 99998888 45 999988763 233322 1111112346779999999 6 34444
Q ss_pred -------------CC-cEEEEeecC-CcceeEEEeec----CCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECC
Q 040307 95 -------------GD-SLRLWEIHD-DRTELKSLLNS----NKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDID 154 (339)
Q Consensus 95 -------------~~-~i~iw~~~~-~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~ 154 (339)
.+ .+.+|+++. ++ ....+.. +. ..+.+++|+| ++++++++.. ++.|++||+.
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~~~~~~~~-----~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQNYEYQEN-----TGIHGMVFDP-TETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEEEEECCTT-----CCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceeccceeecCCceEEEEccCCCCc--CcceEeeEEeCCC-----CcceEEEECC-CCCEEEEEcCCCCEEEEEEEC
Confidence 34 899999974 44 2222221 22 5788999998 8988887764 6899999998
Q ss_pred -CCeee--eeee--ccCCceeEEEec-CCcEEEEEeC-CCcEEEEECC--CCccee---eEEeCCCC----CC------C
Q 040307 155 -REILE--TQLV--AHDREVYDISWG-GFNVFASVSG-DCSVRVFDLR--DKERST---IIYENPVQ----DC------P 212 (339)
Q Consensus 155 -~~~~~--~~~~--~~~~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~~~~~~----~~------~ 212 (339)
+++.. ..+. .+...+..++|+ +++++++++. ++.|.+|++. +++... .+...+.. .. .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 255 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence 66542 2333 235678999999 7878877764 6899999875 333211 12211111 11 4
Q ss_pred eEEEE-EecCCCCeEEEEeeCCC-----eEEEEecCCCCCceE---EEecCCCCeeEEEecc---CCCCeEEEEeC-CCc
Q 040307 213 LLRLE-WNKADPRFMATVGMDSN-----KVVVLDIRFPTNPVV---VLSKHEGSVNGISWAP---LYGRRLCSVAD-DSR 279 (339)
Q Consensus 213 v~~~~-~~p~~~~~l~~~~~d~~-----~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~p---~~~~~l~~~~~-dg~ 279 (339)
+..++ |+| ++++|+++..+.. .|.+|++...++... ....+...+..++|+| ++ ++|++++. ++.
T Consensus 256 ~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~v~~~~~~~ 333 (365)
T 1jof_A 256 RADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGW 333 (365)
T ss_dssp EEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCE
T ss_pred cccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-CEEEEEEcCCCe
Confidence 78999 998 8888887765432 399999964344332 2333555678899999 78 58888876 489
Q ss_pred EEEEEecCCC
Q 040307 280 ALIWEVVGPG 289 (339)
Q Consensus 280 v~iwd~~~~~ 289 (339)
|.+|++....
T Consensus 334 v~v~~~~~~~ 343 (365)
T 1jof_A 334 LEIYRWKDEF 343 (365)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEEchhh
Confidence 9999997654
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.85 E-value=7.6e-19 Score=161.09 Aligned_cols=284 Identities=9% Similarity=-0.021 Sum_probs=180.4
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCce---------EEEEc--CCCC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT---------NIAFF--PSEE 84 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~---------~l~~~--~~~~ 84 (339)
+...+..++|+++ ..+++... .+.++...||.+... +.... + ..+...+. ...|+ ||+
T Consensus 22 ~~~~~~~~~~s~~---~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~---l-~~~~~~~~~~~~~~~~~~~~~~~SPDg- 90 (662)
T 3azo_A 22 RSGRPACVGAVGD---EVWWVAPR--PAEAGRATLVRRRAD-GAEES---A-LPAPWNVRNRVFEYSGFPWAGVPRPAG- 90 (662)
T ss_dssp TCSCCEEEEEETT---EEEEEEEE--TTTTTEEEEEEECTT-SCEEE---S-SCTTCCBCCCGGGTCCCCEEEECCSSS-
T ss_pred cCCccceeEEcCC---eEEEEecC--cccCCcEEEEEECCC-CCcce---e-CCCCccccccccccCCccceeeeecCC-
Confidence 5678999999988 76666652 115788999887433 32221 1 34555555 56666 999
Q ss_pred CCCCCe-EEEeCC---cEEEEeec--C-CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----------Ce
Q 040307 85 TLNPDI-VATSGD---SLRLWEIH--D-DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----------TT 147 (339)
Q Consensus 85 ~~~~~~-la~~~~---~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------~~ 147 (339)
+. |+.+++ .|.++++. . ++ ...+.......+...+..++|+| +++.|++++.+ ..
T Consensus 91 ----~~~la~~~~~~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 91 ----GPLLVFTHFGDQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp ----SCEEEEEBTTTCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEE
T ss_pred ----CeEEEEEECCCCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeE
Confidence 66 666654 56666655 2 33 22333310000115788999998 99999998877 58
Q ss_pred EEEEECCC------Ceeeeeee-ccCCceeEEEec-CCcEEEEEeCC--------CcEEEEECC-CCc--ceeeEEeCCC
Q 040307 148 CVIWDIDR------EILETQLV-AHDREVYDISWG-GFNVFASVSGD--------CSVRVFDLR-DKE--RSTIIYENPV 208 (339)
Q Consensus 148 v~i~d~~~------~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d--------~~i~i~d~~-~~~--~~~~~~~~~~ 208 (339)
|++||+.+ ++. ..+. .+...+..++|+ ++++|+.++.+ ..|++||+. ++. ....+...
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-- 239 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-- 239 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred EEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC--
Confidence 99999987 543 4444 556678889999 78889887755 379999998 451 23333332
Q ss_pred CCCCeEEEEEecCCCCeEEEEeeCCC-eEEEEecCCCCCceEEEecCCCC---------eeEEEeccCCCCeEEEEeCCC
Q 040307 209 QDCPLLRLEWNKADPRFMATVGMDSN-KVVVLDIRFPTNPVVVLSKHEGS---------VNGISWAPLYGRRLCSVADDS 278 (339)
Q Consensus 209 ~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~---------v~~~~~~p~~~~~l~~~~~dg 278 (339)
+...+..++|+| +|++++++..++. .|.+||+.. ++ ...+..+... +..++|+|++ +++++++. +
T Consensus 240 ~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~-~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~ 314 (662)
T 3azo_A 240 PEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPAT-GA-ATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-G 314 (662)
T ss_dssp TTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTT-CC-EEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-S
T ss_pred CCceEcceEECC-CCeEEEEECCCCCeEEEEEECCC-Cc-eeecccccccccCccccccCceEeEeCCC-EEEEEEEc-C
Confidence 356889999999 7777777777764 266666543 33 3333322222 5678999998 69999988 9
Q ss_pred cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE--EEecCCeEEEEe
Q 040307 279 RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI--AIAFVNKLQLLK 338 (339)
Q Consensus 279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~--~~~~d~~v~~w~ 338 (339)
.++||.+.... .....+..+...+..+ |++++..++ +.+.+....+|.
T Consensus 315 ~~~l~~~d~~~-----------~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 315 AAVLGILDPES-----------GELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp SCEEEEEETTT-----------TEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEE
T ss_pred ccEEEEEECCC-----------CcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEE
Confidence 99999766433 0123334456667766 144444433 345555555553
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=1.1e-18 Score=161.91 Aligned_cols=250 Identities=11% Similarity=0.112 Sum_probs=168.8
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----- 145 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----- 145 (339)
.....++.|+|++ ++++++.+.|++|++.+++ ....+.+|....+......+.||| |+++|+.++.+
T Consensus 16 ~~~~~~~~w~~dg-----~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 16 RLKLYSLRWISDH-----EYLYKQENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCCCEEECSSS-----EEEEEETTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSS
T ss_pred cccccccEECCCC-----cEEEEcCCcEEEEECCCCc--eEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEE
Confidence 3446789999999 8999883399999999987 556677765333333445689999 99999998876
Q ss_pred ----CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe-------
Q 040307 146 ----TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL------- 213 (339)
Q Consensus 146 ----~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v------- 213 (339)
+.+.+||+.+++.. .+..+...+..++|| +++.|+.+. ++.|++||+.++......... +...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g--~~~~~~~g~~~~ 163 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG--KEDIIYNGITDW 163 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC--BTTTEEESBCCH
T ss_pred EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC--CccceecCcccc
Confidence 56779999998754 456677889999999 788888875 689999999887643322211 11112
Q ss_pred ----------EEEEEecCCCCeEEEEeeCCC-----------------------------------eEEEEecCC---CC
Q 040307 214 ----------LRLEWNKADPRFMATVGMDSN-----------------------------------KVVVLDIRF---PT 245 (339)
Q Consensus 214 ----------~~~~~~p~~~~~l~~~~~d~~-----------------------------------~i~i~d~~~---~~ 245 (339)
..+.|+| +|+.||..+.|.+ .|++||+.. ..
T Consensus 164 v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 164 VYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred cccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 3589999 8999988764432 377788875 32
Q ss_pred C-ceEEEec------CCCCeeEEEeccCCCCeEEEEeC----CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeE
Q 040307 246 N-PVVVLSK------HEGSVNGISWAPLYGRRLCSVAD----DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEIN 314 (339)
Q Consensus 246 ~-~~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 314 (339)
. ....+.. |...+..++|+||+ ++++.... +..|++||+.+++.... ......+....+...|.
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~----~~~~~~l~~~~~~~~v~ 317 (740)
T 4a5s_A 243 NATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWN----CLVARQHIEMSTTGWVG 317 (740)
T ss_dssp CCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEE----ECGGGCEEEECSSSCSS
T ss_pred cceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccc----eeEEEEeeeccCCceEc
Confidence 1 2334432 67789999999999 56665432 33799999987640000 00001112234554444
Q ss_pred -----EEEecCCCCceE-EEe-cCCe--EEEEe
Q 040307 315 -----VVRWSPLELDWI-AIA-FVNK--LQLLK 338 (339)
Q Consensus 315 -----~~~~~p~~~~l~-~~~-~d~~--v~~w~ 338 (339)
.++|+|||+.++ ..+ .+|. |.+|+
T Consensus 318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 789999999776 555 4554 44444
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=3.1e-19 Score=153.30 Aligned_cols=274 Identities=9% Similarity=-0.020 Sum_probs=171.4
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCC-ceEEEEcCCCCCCCCCeEEEeC-C-
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYT-PTNIAFFPSEETLNPDIVATSG-D- 96 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~~~la~~~-~- 96 (339)
+.+++|+|+ |++||+... .++...||.++..+++... + ..+... ...+.|+|++ +.|+.++ +
T Consensus 38 ~~~~~~Spd---G~~l~~~~~---~~g~~~l~~~d~~~~~~~~---l-~~~~~~~~~~~~~spdg-----~~l~~~~~~~ 102 (396)
T 3c5m_A 38 FYQKCFTQD---GKKLLFAGD---FDGNRNYYLLNLETQQAVQ---L-TEGKGDNTFGGFISTDE-----RAFFYVKNEL 102 (396)
T ss_dssp TTSCCBCTT---SCEEEEEEC---TTSSCEEEEEETTTTEEEE---C-CCSSCBCTTTCEECTTS-----SEEEEEETTT
T ss_pred eecCcCCCC---CCEEEEEEe---cCCCceEEEEECCCCcEEE---e-ecCCCCccccceECCCC-----CEEEEEEcCC
Confidence 788999999 999888762 2333333435555554432 1 222333 3448899999 7776665 4
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEE-------------------EEEcCCCCCEEEEE-----eCCCeEEEEE
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITS-------------------FDWAGFDTRRVATC-----SVDTTCVIWD 152 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~l~~~-----~~d~~v~i~d 152 (339)
.|++|++.+++ .......+. ..... ..|+| +++.++.. ..+..|.+||
T Consensus 103 ~l~~~d~~~~~--~~~~~~~~~-----~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 103 NLMKVDLETLE--EQVIYTVDE-----EWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EEEEEETTTCC--EEEEEECCT-----TEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEE
T ss_pred cEEEEECCCCC--cEEEEeccc-----ccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEE
Confidence 89999998876 333333222 11111 34666 66666554 3567899999
Q ss_pred CCCCeeeeeeeccCCceeEEEecC--CcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 153 IDREILETQLVAHDREVYDISWGG--FNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 153 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
+.+++..... .+...+..+.|++ +..|+..+.+ ..|.+||+........ ... .....+..++|+| +++
T Consensus 175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~-~~~~~~~~~~~sp-dg~ 250 (396)
T 3c5m_A 175 IETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-KEH-AEGESCTHEFWIP-DGS 250 (396)
T ss_dssp TTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-SCC-CTTEEEEEEEECT-TSS
T ss_pred CCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-ecc-CCCccccceEECC-CCC
Confidence 9888755444 4667789999995 6667666543 3688899876542222 111 1123578899998 888
Q ss_pred eEEEEeeCC----CeEEEEecCCCCCceEEEecCCCCeeEEEecc-CCCCeEEEEe----------------CCCcEEEE
Q 040307 225 FMATVGMDS----NKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP-LYGRRLCSVA----------------DDSRALIW 283 (339)
Q Consensus 225 ~l~~~~~d~----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~----------------~dg~v~iw 283 (339)
.|+..+.++ ..|++||+.. ++. ..+..... .. +.|+| ++ +++++++ .++.|++|
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~-g~~-~~l~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~ 325 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPET-LEN-EEVMVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVL 325 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTT-CCE-EEEEECCS-EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEE
T ss_pred EEEEEecCCCCccceEEEEECCC-CCe-EEeeeCCC-CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEE
Confidence 777665541 1299999876 332 22322222 33 89999 98 4777654 34679999
Q ss_pred EecCCCCCCCCCCCCCcccceeeecccc-----------eeEEEEecCCCCceEEEe-cCCeEEEEe
Q 040307 284 EVVGPGYRSGNGGPSGDVEPELCYQSMA-----------EINVVRWSPLELDWIAIA-FVNKLQLLK 338 (339)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~p~~~~l~~~~-~d~~v~~w~ 338 (339)
|+.... ...+..+.. .+..++|+|+|+.|+.++ .++...+|.
T Consensus 326 d~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 326 NTKAKS-------------AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp ETTTTB-------------CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ecccCc-------------eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 987765 222333332 256789999998877665 456666664
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=5e-18 Score=157.43 Aligned_cols=241 Identities=10% Similarity=0.081 Sum_probs=157.7
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCC-----CceEEEEcCCCCCCCCCeEE
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPY-----TPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~~~~~la 92 (339)
....+++|+|+ +++|+++ ++.|++|+...... .. .+ ..|.. ....++||||+ +.|+
T Consensus 17 ~~~~~~~w~~d---g~~~~~~------~~~i~~~~~~~~~~--~~--~~-~~~~~~~~~~~~~~~~~Spdg-----~~l~ 77 (740)
T 4a5s_A 17 LKLYSLRWISD---HEYLYKQ------ENNILVFNAEYGNS--SV--FL-ENSTFDEFGHSINDYSISPDG-----QFIL 77 (740)
T ss_dssp CCCCCEEECSS---SEEEEEE------TTEEEEEETTTCCE--EE--EE-CTTTTTTCCSCCCEEEECTTS-----SEEE
T ss_pred ccccccEECCC---CcEEEEc------CCcEEEEECCCCce--EE--EE-echhhhhhcccccceEECCCC-----CEEE
Confidence 35779999999 9888773 68999977665432 21 11 33332 23458999999 7777
Q ss_pred EeCC-----------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 93 TSGD-----------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 93 ~~~~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
.+++ .+.+||+.+++ . ..+..+. ..+...+||| +++.||.+. ++.|++|++.+++..+.
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~--~-~~l~~~~-----~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQ--L-ITEERIP-----NNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTE--E-CCSSCCC-----TTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEECCeeeEEEccceEEEEEECCCCc--E-EEcccCC-----CcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEE
Confidence 7653 35699999886 2 2344444 6799999999 999999885 68999999988764432
Q ss_pred e-eccCCce-----------------eEEEec-CCcEEEEEeCCC-----------------------------------
Q 040307 162 L-VAHDREV-----------------YDISWG-GFNVFASVSGDC----------------------------------- 187 (339)
Q Consensus 162 ~-~~~~~~v-----------------~~~~~~-~~~~l~~~~~d~----------------------------------- 187 (339)
. .++...+ ..+.|+ +++.|+.++.|.
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~ 227 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT 227 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence 1 2222222 348899 788888875332
Q ss_pred -cEEEEECCC---Ccc--eeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeCC---CeEEEEecCCCC-----CceEE
Q 040307 188 -SVRVFDLRD---KER--STIIYENP---VQDCPLLRLEWNKADPRFMATVGMDS---NKVVVLDIRFPT-----NPVVV 250 (339)
Q Consensus 188 -~i~i~d~~~---~~~--~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~---~~i~i~d~~~~~-----~~~~~ 250 (339)
.|++||+.+ ++. ...+.... .+...+..++|+| +++.++.....+ ..|.+||+.... ..+..
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 477888887 631 22221100 1456789999999 788666554332 149999998743 01222
Q ss_pred E--ecCCCCee-----EEEeccCCCCeEE-EEe-CCC--cEEEEEecCCC
Q 040307 251 L--SKHEGSVN-----GISWAPLYGRRLC-SVA-DDS--RALIWEVVGPG 289 (339)
Q Consensus 251 ~--~~~~~~v~-----~~~~~p~~~~~l~-~~~-~dg--~v~iwd~~~~~ 289 (339)
+ ..|...|. .++|+|||. .|+ ..+ .+| .|++||+....
T Consensus 307 l~~~~~~~~v~~~~~~~p~fspDG~-~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 307 HIEMSTTGWVGRFRPSEPHFTLDGN-SFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSS-EEEEEEECTTSCEEEEEEETTCSS
T ss_pred eeeccCCceEccCcCCCceEcCCCC-EEEEEEEcCCCceEEEEEECCCCc
Confidence 2 45666555 789999994 555 555 444 47777776655
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=1.2e-16 Score=133.99 Aligned_cols=264 Identities=8% Similarity=-0.002 Sum_probs=175.8
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
..|.+++|+|+ +..++... .++.++.|. ...+. .+ ..+...+.+++|+|++ ++++++. +
T Consensus 6 ~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~----~~~~~---~~-~~~~~~~~~~~~~~~g-----~l~~~~~~~ 65 (333)
T 2dg1_A 6 QDLPTLFYSGK---SNSAVPII----SESELQTIT----AEPWL---EI-SKKGLQLEGLNFDRQG-----QLFLLDVFE 65 (333)
T ss_dssp CCCCBCCSCGG---GGCSSCCC----CGGGSCEEE----CEEEE---EE-ESSCCCEEEEEECTTS-----CEEEEETTT
T ss_pred cccceeeecCC---ccceeEEe----ecccCcccc----cceeE---EE-eccCccccCcEECCCC-----CEEEEECCC
Confidence 45788999999 77777766 588888861 11222 22 4556678999999999 8887765 3
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCeeeeeee--ccCCce
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREILETQLV--AHDREV 169 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~--~~~~~v 169 (339)
.|.+|+.++++ .......+. ..+.+++++| +++++++...+ +.|.+||.++++....+. .....+
T Consensus 66 ~~i~~~d~~~~~--~~~~~~~~~-----~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 66 GNIFKINPETKE--IKRPFVSHK-----ANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp CEEEEECTTTCC--EEEEEECSS-----SSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CEEEEEeCCCCc--EEEEeeCCC-----CCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 89999998876 332222333 6799999998 88888877666 689999998776443332 234568
Q ss_pred eEEEec-CCcEEEEEeC------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE-eeCCCeEEEEec
Q 040307 170 YDISWG-GFNVFASVSG------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV-GMDSNKVVVLDI 241 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~d~~~i~i~d~ 241 (339)
.+++++ +++++++... .+.|..+|..+.+....... ...+..++|+| +++.|+++ ..++. |.+||+
T Consensus 138 ~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~i~~~~-dg~~l~v~~~~~~~-i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----ISVANGIALST-DEKVLWVTETTANR-LHRIAL 211 (333)
T ss_dssp EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----ESSEEEEEECT-TSSEEEEEEGGGTE-EEEEEE
T ss_pred cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC----CCcccceEECC-CCCEEEEEeCCCCe-EEEEEe
Confidence 899999 6777666553 24566666655442222111 23578899998 77766554 44566 999999
Q ss_pred CCCCCceEEE--------ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-ccc--
Q 040307 242 RFPTNPVVVL--------SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSM-- 310 (339)
Q Consensus 242 ~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 310 (339)
...+..+..+ ..+ ..+..+++++++ +++++...++.|.+||.. .+ ..... ...
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~-------------~~~~~~~~~~~ 275 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GY-------------PIGQILIPGRD 275 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SC-------------EEEEEECTTGG
T ss_pred cCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CC-------------EEEEEEcCCCc
Confidence 6433333211 111 367889999998 577777778899999874 33 22222 121
Q ss_pred ----ceeEEEEecCCCCceEEEecC
Q 040307 311 ----AEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 311 ----~~i~~~~~~p~~~~l~~~~~d 331 (339)
..+.+++|+|++..|+.++.+
T Consensus 276 ~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 276 EGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp GTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cccccCcceEEECCCCCEEEEEeCc
Confidence 268999999998766655443
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=1.5e-17 Score=140.27 Aligned_cols=250 Identities=10% Similarity=-0.006 Sum_probs=156.7
Q ss_pred CCceeeeeeccC--CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC-----CCCceEEEE
Q 040307 7 KKPGVHTYMAQW--PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH-----PYTPTNIAF 79 (339)
Q Consensus 7 ~~~~~~~~~~~~--~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~ 79 (339)
+++.+..+.... .+..++|+|+ +++++++.. .++.|.+|+.. +++... .+...+ ...+..++|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~s~d---g~~~~v~~~---~~~~i~~~d~~--t~~~~~--~~~~~~~~~~~~~~~~~~~~ 99 (349)
T 1jmx_B 30 SDTVYKSCVMPDKFGPGTAMMAPD---NRTAYVLNN---HYGDIYGIDLD--TCKNTF--HANLSSVPGEVGRSMYSFAI 99 (349)
T ss_dssp TTEEEEEEECSSCCSSCEEEECTT---SSEEEEEET---TTTEEEEEETT--TTEEEE--EEESCCSTTEEEECSSCEEE
T ss_pred CCcEEEEEecCCCCCCceeEECCC---CCEEEEEeC---CCCcEEEEeCC--CCcEEE--EEEcccccccccccccceEE
Confidence 345555565555 7889999999 886655442 58899997654 333332 222222 234889999
Q ss_pred cCCCCCCCCCeEEEeC--------------CcEEEEeecCCcc-eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC
Q 040307 80 FPSEETLNPDIVATSG--------------DSLRLWEIHDDRT-ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV 144 (339)
Q Consensus 80 ~~~~~~~~~~~la~~~--------------~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 144 (339)
+|++ +.|++++ +.|.+||+.+++. .....+..+ ..+.+++|+| +++ +++++
T Consensus 100 spdg-----~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~-dg~-l~~~~- 165 (349)
T 1jmx_B 100 SPDG-----KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP------RQVYLMRAAD-DGS-LYVAG- 165 (349)
T ss_dssp CTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC------SSCCCEEECT-TSC-EEEES-
T ss_pred CCCC-----CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC------CcccceeECC-CCc-EEEcc-
Confidence 9999 7777765 4999999987542 122333332 4578899998 888 55554
Q ss_pred CCeEEEEECCCCeeeeeeeccCC------------------------ceeEEEec-CCcEE-EEEeCCCcEEEEECCCCc
Q 040307 145 DTTCVIWDIDREILETQLVAHDR------------------------EVYDISWG-GFNVF-ASVSGDCSVRVFDLRDKE 198 (339)
Q Consensus 145 d~~v~i~d~~~~~~~~~~~~~~~------------------------~v~~~~~~-~~~~l-~~~~~d~~i~i~d~~~~~ 198 (339)
+.|.+||+.+++....+..+.. ....++++ ++... ........+..+|..+++
T Consensus 166 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
T 1jmx_B 166 -PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 244 (349)
T ss_dssp -SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred -CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc
Confidence 3499999999887766643320 22334444 11000 000000112224544443
Q ss_pred ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307 199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS 278 (339)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 278 (339)
........ ....+..++|+|.++++++++ ++. |.+||+.+ .+.+..+.. ...+.+++|+|++ +.|++++.++
T Consensus 245 ~~~~~~~~--~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~ 316 (349)
T 1jmx_B 245 THTQEFAD--LTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQ-RKLIKAANL-DHTYYCVAFDKKG-DKLYLGGTFN 316 (349)
T ss_dssp EEEEEEEE--CSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTT-TEEEEEEEC-SSCCCEEEECSSS-SCEEEESBSS
T ss_pred EEeccccc--CCCcceeeEecCCCCCEEEEE--cCe-EEEEECcc-CeEEEEEcC-CCCccceEECCCC-CEEEEecCCC
Confidence 22221111 345788999997467777777 666 99999987 555555553 4467899999999 4777788889
Q ss_pred cEEEEEecCCC
Q 040307 279 RALIWEVVGPG 289 (339)
Q Consensus 279 ~v~iwd~~~~~ 289 (339)
.|.+||+.+.+
T Consensus 317 ~v~v~d~~~~~ 327 (349)
T 1jmx_B 317 DLAVFNPDTLE 327 (349)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEEeccccc
Confidence 99999998766
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.5e-16 Score=130.42 Aligned_cols=240 Identities=9% Similarity=-0.013 Sum_probs=164.6
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC-CccCCCCEEEEEEcCCCCCEEEEEeC-C
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK-TSEFSSAITSFDWAGFDTRRVATCSV-D 145 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~-d 145 (339)
+-..+.++++++++ .++++.. + .|.+|+.+.. ....+.... ...+...+..+++.+.++.++++... +
T Consensus 28 ~~~~p~~v~~~~~g-----~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 28 QFTEPSGVAVNAQN-----DIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp CBSCEEEEEECTTC-----CEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred ccCCCceEEECCCC-----CEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 44568899999999 7888765 3 8999998743 333333210 11122568899995326666666543 8
Q ss_pred CeEEEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307 146 TTCVIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
+.|.+|| .+++.+..+. .+...+.+++++ +++++++...++.|.+||... +.... .....+...+..++++| ++
T Consensus 100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~-~~~~~~~~~p~~i~~~~-~g 175 (286)
T 1q7f_A 100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK-FGCSKHLEFPNGVVVND-KQ 175 (286)
T ss_dssp CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE-EECTTTCSSEEEEEECS-SS
T ss_pred CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEE-eCCCCccCCcEEEEECC-CC
Confidence 9999999 5666666553 234568899999 678887777789999999654 32222 22212335689999998 78
Q ss_pred CeEEEEeeCCCeEEEEecCCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEeCCC-cEEEEEecCCCCCCCCCCCCCc
Q 040307 224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVADDS-RALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
+++++...++. |++||.. +..+..+..+ ...+..++++|++ .++++...++ .|.+|+.....
T Consensus 176 ~l~v~~~~~~~-i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~----------- 240 (286)
T 1q7f_A 176 EIFISDNRAHC-VKVFNYE--GQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQL----------- 240 (286)
T ss_dssp EEEEEEGGGTE-EEEEETT--CCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCE-----------
T ss_pred CEEEEECCCCE-EEEEcCC--CCEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCE-----------
Confidence 87777666777 9999974 3455555443 3578999999999 5888887776 99999954322
Q ss_pred ccceeeec--ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 301 VEPELCYQ--SMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 301 ~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
...... ....+.+++++|+|..+++ +.|+.|++|++
T Consensus 241 --~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 241 --ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp --EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred --EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 112222 2234789999999974444 78999999984
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=1.5e-16 Score=134.22 Aligned_cols=258 Identities=14% Similarity=0.138 Sum_probs=168.5
Q ss_pred CCeeEEEeeecCCcccEEEEeeec-----cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEE
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFL-----EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~-----~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la 92 (339)
..+..+++ + |+.+|..... ...++.|.+|+. .++.... . ..+..++|+|++ +.||
T Consensus 15 ~~~~~~~~--d---G~~i~~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~-----l---~~~~~~~~SpDg-----~~la 74 (347)
T 2gop_A 15 AYLSDPRT--K---GELVAYVLTKANLKDNKYENTIVIENL--KNNARRF-----I---ENATMPRISPDG-----KKIA 74 (347)
T ss_dssp CEEEEEEE--E---TTEEEEEEEEEETTTTEEEEEEEEEET--TTCCEEE-----E---ESCEEEEECTTS-----SEEE
T ss_pred EEcccceE--C---CcEEEEEEeecCcccCCccceEEEEeC--CCCceEE-----c---ccCCCeEECCCC-----CEEE
Confidence 45677778 7 8888875421 012456667554 4444332 2 468899999999 7777
Q ss_pred EeC-----C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--------------------
Q 040307 93 TSG-----D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-------------------- 145 (339)
Q Consensus 93 ~~~-----~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------------------- 145 (339)
..+ + .|.+|++.+++ ...... +. . +..+.|+| +++.|+.++.+
T Consensus 75 ~~~~~~~~~~~~l~~~~~~~g~--~~~l~~-~~-----~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 75 FMRANEEKKVSEIWVADLETLS--SKKILE-AK-----N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTE--EEEEEE-ES-----E-EEEEEECT-TSSEEEEEEECCCC---------CCCC----
T ss_pred EEEeccCCCcceEEEEECCCCc--eEEEEc-CC-----C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence 654 2 48888887765 333222 22 4 88999998 89988887642
Q ss_pred -------CeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC-------cEEEEECCCCcceeeEEeCCCCC
Q 040307 146 -------TTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC-------SVRVFDLRDKERSTIIYENPVQD 210 (339)
Q Consensus 146 -------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~ 210 (339)
..|++||+.+++.+..+.. . .+..+.|+ ++ +++++..+. ...+|.+.+++ ...+.. +
T Consensus 145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~---~- 216 (347)
T 2gop_A 145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFE---K- 216 (347)
T ss_dssp -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEE---E-
T ss_pred ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEecc---C-
Confidence 5799999988876455554 4 78899999 56 777776542 33454444333 333222 1
Q ss_pred CCeEEEEEecCCCCeEEEEeeCC-------CeEEEEecCCCCCceEEEecCCCCeeE-EEeccCCCCeEEEEeCCCcEEE
Q 040307 211 CPLLRLEWNKADPRFMATVGMDS-------NKVVVLDIRFPTNPVVVLSKHEGSVNG-ISWAPLYGRRLCSVADDSRALI 282 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~-------~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg~v~i 282 (339)
..+..+ +| +|+.|+.++.+. ..|.+|| . ++.......+...+.. +.|+ ++ ++++++.++.++|
T Consensus 217 ~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l 287 (347)
T 2gop_A 217 VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNL 287 (347)
T ss_dssp ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEE
T ss_pred cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEE
Confidence 344444 88 888887776443 2378888 2 4433333455677886 9999 75 8888999999999
Q ss_pred EEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeE-EEEe
Q 040307 283 WEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKL-QLLK 338 (339)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v-~~w~ 338 (339)
| +..++ ......+...|.+++|+| ..+++++.++.. ++|.
T Consensus 288 ~-~~~g~-------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 288 Y-IWDGE-------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp E-EESSS-------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred E-EcCCc-------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 9 88433 344445577899999999 455666666654 7775
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=8.9e-16 Score=128.47 Aligned_cols=248 Identities=10% Similarity=0.033 Sum_probs=173.1
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccC------------------------CeEEEEecCCCCCcccceeeEeecCCCC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYS------------------------NKIELVNFNPETSDFSADNRLIFDHPYT 73 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~------------------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 73 (339)
..+.+++++|+ ++++++.. .+ +.|.+ ++..++.+.. .....+-..
T Consensus 24 ~~v~~va~d~~---G~l~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~d~~~g~~~~--~~~~~~~~~ 92 (329)
T 3fvz_A 24 GQVSGVALDSK---NNLVIFHR----GDHVWDGNSFDSKFVYQQRGLGPIEEDTILV--IDPNNAEILQ--SSGKNLFYL 92 (329)
T ss_dssp SCEEEEEECTT---CCEEEEEC----TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEE--ECTTTCCEEE--EECTTTCSS
T ss_pred CCceEEEECCC---CCEEEEeC----CCCeEEeeccCcceeecccccccccCCcEEE--EECCCCeEEe--ccCCCccCC
Confidence 57999999999 99888777 34 36777 5554444443 221234457
Q ss_pred ceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCC----CccCCCCEEEEEEcCCCCCEEEEEe-CCC
Q 040307 74 PTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNK----TSEFSSAITSFDWAGFDTRRVATCS-VDT 146 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~-~d~ 146 (339)
+..++++|++ +++++... .|++|+.+... ..+..+.... ..........++++|.++.++++.+ .++
T Consensus 93 p~gia~d~~g-----~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 93 PHGLSIDTDG-----NYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp EEEEEECTTS-----CEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred ceEEEECCCC-----CEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 8999999999 88888764 99999986542 1233332100 0112256889999975677777775 689
Q ss_pred eEEEEECCCCeeeeeeeccC----------CceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeE
Q 040307 147 TCVIWDIDREILETQLVAHD----------REVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLL 214 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~~~----------~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 214 (339)
.|++|| .+++.+..+.... .....++++ + ++++++...++.|++||..+++....+ ....+...+.
T Consensus 167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-~~~~~~~~~~ 244 (329)
T 3fvz_A 167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-KHASFGRNVF 244 (329)
T ss_dssp EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CCTTTTTCEE
T ss_pred eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-eccccCCCcc
Confidence 999999 4666666663222 337899998 5 677788888899999999866644443 2223456788
Q ss_pred EEEEecCCCCeEEEEee-------CCCeEEEEecCCCCCceEEEe---cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 215 RLEWNKADPRFMATVGM-------DSNKVVVLDIRFPTNPVVVLS---KHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~-------d~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
.++|+| +..+.+.+. +.. |++||... ++.+..+. .+.....+++++|+| .++++...++.|++|+
T Consensus 245 ~~~~~p--g~~~~~~g~~~v~~~~~~~-v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 245 AISYIP--GFLFAVNGKPYFGDQEPVQ-GFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEEET--TEEEEEECCCCTTCSCCCC-EEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEE
T ss_pred eeeecC--CEEEEeCCCEEeccCCCcE-EEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEe
Confidence 999997 333333322 235 99999887 56666663 566778999999999 6999999999999999
Q ss_pred ecCCC
Q 040307 285 VVGPG 289 (339)
Q Consensus 285 ~~~~~ 289 (339)
+....
T Consensus 320 ~~~~~ 324 (329)
T 3fvz_A 320 LTEKM 324 (329)
T ss_dssp EEECS
T ss_pred CCccc
Confidence 97654
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=2.7e-16 Score=133.13 Aligned_cols=277 Identities=9% Similarity=-0.004 Sum_probs=177.6
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeec-----CCCCce
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFD-----HPYTPT 75 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-----~~~~v~ 75 (339)
+++.+.++...... .++|+|+ +++|+++.. .++.++.|.+|+.. +.+... .+... +.....
T Consensus 40 t~~~~~~i~~g~~p-~i~~spd---g~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t~~~~~--~i~~~~~~~~~g~~p~ 111 (361)
T 2oiz_A 40 NGKFLGMVPTAFNG-HVQVSND---GKKIYTMTTYHERITRGKRSDVVEVWDAD--KLTFEK--EISLPPKRVQGLNYDG 111 (361)
T ss_dssp TCCEEEEEECCEEE-EEEECTT---SSEEEEEEEEETTSSSSCEEEEEEEEETT--TCCEEE--EEEECTTBCCBCCCGG
T ss_pred CCeEEEEecCCCCC-ceEECCC---CCEEEEEEecccccccCCCCCEEEEEECc--CCcEEE--EEEcCccccccCCCcc
Confidence 34445455444344 8999999 999988762 11136789997654 333333 22221 235678
Q ss_pred EEEEcCCCCCCCCCeEEEe--C-C-cEEEEeecCCcceeEEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Q 040307 76 NIAFFPSEETLNPDIVATS--G-D-SLRLWEIHDDRTELKSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI 150 (339)
Q Consensus 76 ~l~~~~~~~~~~~~~la~~--~-~-~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i 150 (339)
.++|+|++ ++|.++ + + .|.+||+.+.+ .+.. +.. .....+.+.|.....+++.+.||.+.+
T Consensus 112 ~i~~spdg-----~~l~v~n~~~~~~v~v~d~~~~~--~~~~~i~~-------~~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 112 LFRQTTDG-----KFIVLQNASPATSIGIVDVAKGD--YVEDVTAA-------AGCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp GEEECTTS-----SEEEEEEESSSEEEEEEETTTTE--EEEEEGGG-------TTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred eEEECCCC-----CEEEEECCCCCCeEEEEECCCCc--EEEEEecC-------CCcceeEEcCCCCeeEEEECCCCcEEE
Confidence 99999999 666654 2 3 89999999886 5555 443 223335667744478888899999999
Q ss_pred EECCC-Ceeee------eeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeE-EeCCC----C----CCCe
Q 040307 151 WDIDR-EILET------QLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTII-YENPV----Q----DCPL 213 (339)
Q Consensus 151 ~d~~~-~~~~~------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~----~----~~~v 213 (339)
|+... ++... .+.....++ .+.++ ++..++..+.++.+.++|+......... ..... . ....
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~ 256 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY 256 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred EEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence 99865 44331 111222222 22223 4556677778899999999765422111 11000 0 0111
Q ss_pred EEEEEecCCCCeEEEEee-C---------CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307 214 LRLEWNKADPRFMATVGM-D---------SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~~~-d---------~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw 283 (339)
..++|+| +++.++++.. + ...|.+||+.+ .+.+.++..+. +.+++|+|++ ++|++++. +.|.+|
T Consensus 257 ~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 257 NLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVY 330 (361)
T ss_dssp SCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTT-TEEEEECS-SCEEEE
T ss_pred eEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEE
Confidence 2368998 6666666543 1 12399999987 66788888776 9999999999 58888776 999999
Q ss_pred EecCCCCCCCCCCCCCcccceee-ecccceeEEEEecCCCC
Q 040307 284 EVVGPGYRSGNGGPSGDVEPELC-YQSMAEINVVRWSPLEL 323 (339)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~ 323 (339)
|..+.. ++.+.. .........++++|+|.
T Consensus 331 D~~t~~-----------l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 331 DISQPE-----------PKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECSSSS-----------CEEEEEETTSCSSEEEEEECCCSC
T ss_pred ECCCCc-----------ceeeEEeccCCCCcEEEEecCCCC
Confidence 999882 114434 35677788999999985
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=2.9e-17 Score=140.69 Aligned_cols=230 Identities=12% Similarity=0.012 Sum_probs=150.2
Q ss_pred EEEcCCCCCCCCCeEEEeC--C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 77 IAFFPSEETLNPDIVATSG--D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 77 l~~~~~~~~~~~~~la~~~--~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
.+|+||+ +.|+.++ + .|.+||+.+++ ......++. ..+..+.|+| +++.|+.++.++.|++|
T Consensus 41 ~~~SpDg-----~~l~~~~~~~g~~~l~~~d~~~g~--~~~lt~~~~-----~~~~~~~~sp-dg~~l~~~~~~~~l~~~ 107 (388)
T 3pe7_A 41 KCFTRDG-----SKLLFGGAFDGPWNYYLLDLNTQV--ATQLTEGRG-----DNTFGGFLSP-DDDALFYVKDGRNLMRV 107 (388)
T ss_dssp CCBCTTS-----CEEEEEECTTSSCEEEEEETTTCE--EEECCCSSC-----BCSSSCEECT-TSSEEEEEETTTEEEEE
T ss_pred ccCCCCC-----CEEEEEEcCCCCceEEEEeCCCCc--eEEeeeCCC-----CCccceEEcC-CCCEEEEEeCCCeEEEE
Confidence 7899999 6666654 2 48888888876 444444443 3444678998 99999999999999999
Q ss_pred ECCCCeeeeeeeccCCceeEEEe--c-CCcEEEEE----------------------eCCCcEEEEECCCCcceeeEEeC
Q 040307 152 DIDREILETQLVAHDREVYDISW--G-GFNVFASV----------------------SGDCSVRVFDLRDKERSTIIYEN 206 (339)
Q Consensus 152 d~~~~~~~~~~~~~~~~v~~~~~--~-~~~~l~~~----------------------~~d~~i~i~d~~~~~~~~~~~~~ 206 (339)
|+.+++....+..+...+....| + ++..++.. ..+..|.+||+.+++..... .
T Consensus 108 d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~- 185 (388)
T 3pe7_A 108 DLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-Q- 185 (388)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-E-
T ss_pred ECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-c-
Confidence 99998876666655555544444 5 56666632 23467999999988644333 2
Q ss_pred CCCCCCeEEEEEecCCCCeEEEEeeCC----C-eEEEEecCCCCCceEEEecCC--CCeeEEEeccCCCCeEEEEe-CCC
Q 040307 207 PVQDCPLLRLEWNKADPRFMATVGMDS----N-KVVVLDIRFPTNPVVVLSKHE--GSVNGISWAPLYGRRLCSVA-DDS 278 (339)
Q Consensus 207 ~~~~~~v~~~~~~p~~~~~l~~~~~d~----~-~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~-~dg 278 (339)
+...+..++|+|.+++.|+.....+ . .|.++|... . ....+..+. ..+..++|+|+|. .|+..+ .++
T Consensus 186 --~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~spdg~-~l~~~~~~~~ 260 (388)
T 3pe7_A 186 --ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-T-NMRKVKTHAEGESCTHEFWVPDGS-ALVYVSYLKG 260 (388)
T ss_dssp --ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-C-CCEESCCCCTTEEEEEEEECTTSS-CEEEEEEETT
T ss_pred --CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-C-ceEEeeeCCCCcccccceECCCCC-EEEEEecCCC
Confidence 2357899999984667776666532 1 278888754 2 334454444 3578899999995 554433 222
Q ss_pred ----cEEEEEecCCCCCCCCCCCCCcccceeeecccc------eeEEEEecCCCCceEEE---------ecCCeEEEEeC
Q 040307 279 ----RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA------EINVVRWSPLELDWIAI---------AFVNKLQLLKV 339 (339)
Q Consensus 279 ----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~~~p~~~~l~~~---------~~d~~v~~w~v 339 (339)
.|++||+..++ ...+..... ....++|+|+|+.|+.. ..+..|.+|++
T Consensus 261 ~~~~~l~~~d~~~g~-------------~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~ 327 (388)
T 3pe7_A 261 SPDRFIYSADPETLE-------------NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM 327 (388)
T ss_dssp CCCEEEEEECTTTCC-------------EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred CCcceEEEEecCCCc-------------eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence 39999998876 221111111 02224799999887743 34567888874
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=3e-16 Score=128.61 Aligned_cols=241 Identities=11% Similarity=0.067 Sum_probs=167.1
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE--eecCCCCceEEEE-cCCCCCCCCCeEEEe
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL--IFDHPYTPTNIAF-FPSEETLNPDIVATS 94 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~-~~~~~~~~~~~la~~ 94 (339)
..+.+++++|+ +.++++.. .++.|.+|+.+ +......... ...+...+..+++ .+++ .++++.
T Consensus 30 ~~p~~v~~~~~---g~l~v~~~----~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-----~l~v~~ 95 (286)
T 1q7f_A 30 TEPSGVAVNAQ---NDIIVADT----NNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-----DIIVTE 95 (286)
T ss_dssp SCEEEEEECTT---CCEEEEEG----GGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTT-----EEEEEE
T ss_pred CCCceEEECCC---CCEEEEEC----CCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCC-----eEEEEc
Confidence 46889999999 88888777 58999996644 3222210000 0123356889999 4777 777777
Q ss_pred C--C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--ccCCce
Q 040307 95 G--D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV--AHDREV 169 (339)
Q Consensus 95 ~--~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~v 169 (339)
. + .|.+|+. +++ ....+.... ...+.+++++| +++++++...++.|.+||.. ++.+..+. .+...+
T Consensus 96 ~~~~~~i~~~d~-~g~--~~~~~~~~~----~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 96 RSPTHQIQIYNQ-YGQ--FVRKFGATI----LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP 166 (286)
T ss_dssp CGGGCEEEEECT-TSC--EEEEECTTT----CSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred CCCCCEEEEECC-CCc--EEEEecCcc----CCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCc
Confidence 3 4 9999994 444 444443211 15688999998 88888887788999999964 55555553 344568
Q ss_pred eEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC-CeEEEEecCCCCCc
Q 040307 170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS-NKVVVLDIRFPTNP 247 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-~~i~i~d~~~~~~~ 247 (339)
..++++ +++++++...++.|++||..... ... .....+...+..++++| +++++++...++ . |.+||.. ++.
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~-~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~-i~~~~~~--g~~ 240 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQ-IGGEGITNYPIGVGINS-NGEILIADNHNNFN-LTIFTQD--GQL 240 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEE-ESCTTTSCSEEEEEECT-TCCEEEEECSSSCE-EEEECTT--SCE
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcCCCCE-EEE-EccCCccCCCcEEEECC-CCCEEEEeCCCCEE-EEEECCC--CCE
Confidence 899999 67877777788999999975432 222 22212235688999998 788887776665 6 9999954 455
Q ss_pred eEEEecCCC--CeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 248 VVVLSKHEG--SVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 248 ~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+..+..+.. .+.+++++|++ +++++ +.|+.|++|++....
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 241 ISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCC
T ss_pred EEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccccc
Confidence 666665443 47799999998 56666 679999999987644
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=2.6e-16 Score=131.74 Aligned_cols=239 Identities=12% Similarity=0.007 Sum_probs=166.9
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeCC--------------------------cEEEEeecCCcceeEEEeecCCCccCCC
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSGD--------------------------SLRLWEIHDDRTELKSLLNSNKTSEFSS 124 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~~--------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 124 (339)
-+.+.+++++|++ +++++..+ .|.+||..+++ ....+... ...
T Consensus 23 l~~v~~va~d~~G-----~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~----~~~ 91 (329)
T 3fvz_A 23 PGQVSGVALDSKN-----NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--ILQSSGKN----LFY 91 (329)
T ss_dssp CSCEEEEEECTTC-----CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--EEEEECTT----TCS
T ss_pred cCCceEEEECCCC-----CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--EEeccCCC----ccC
Confidence 3568999999999 88888763 38999988776 44433311 115
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeee---------eccCCceeEEEecC--CcEEEEEe-CCCcEEE
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-LETQL---------VAHDREVYDISWGG--FNVFASVS-GDCSVRV 191 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~---------~~~~~~v~~~~~~~--~~~l~~~~-~d~~i~i 191 (339)
....++++| +++++++...++.|++||..... .+..+ ..+-.....+++++ ++++++.+ .++.|++
T Consensus 92 ~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 92 LPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp SEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 788999998 88988888889999999986442 44444 23344688999993 66667765 5899999
Q ss_pred EECCCCcceeeEEeC-------CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe--cCCCCeeEEE
Q 040307 192 FDLRDKERSTIIYEN-------PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS--KHEGSVNGIS 262 (339)
Q Consensus 192 ~d~~~~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~ 262 (339)
||. .+.....+... +.+-.....++++|+.+.++++...++. |++||... ++.+..+. .+...+.+++
T Consensus 171 ~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~-G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 171 FSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDT-KEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp ECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTT-CCEEEEECCTTTTTCEEEEE
T ss_pred EcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCC-CcEEEEEeccccCCCcceee
Confidence 994 34433332211 0111347899999843777776666666 99999875 55666663 3556788999
Q ss_pred eccCCCCeEEEEe-------CCCcEEEEEecCCCCCCCCCCCCCcccceeee----cccceeEEEEecCCCCceEEEecC
Q 040307 263 WAPLYGRRLCSVA-------DDSRALIWEVVGPGYRSGNGGPSGDVEPELCY----QSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 263 ~~p~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
|+| + ..+++.+ .+..|++|++..++ .+... .+...+..|+++|+|..+++...+
T Consensus 248 ~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~-------------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 248 YIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGE-------------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp EET-T-EEEEEECCCCTTCSCCCCEEEEETTTCC-------------EEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred ecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCe-------------EEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 999 3 3333333 34589999988876 33332 455678999999999656677789
Q ss_pred CeEEEEeC
Q 040307 332 NKLQLLKV 339 (339)
Q Consensus 332 ~~v~~w~v 339 (339)
+.|++|++
T Consensus 313 ~~I~~~~~ 320 (329)
T 3fvz_A 313 NTVWKFTL 320 (329)
T ss_dssp CCEEEEEE
T ss_pred CEEEEEeC
Confidence 99999974
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=6.5e-17 Score=148.27 Aligned_cols=232 Identities=10% Similarity=0.011 Sum_probs=150.6
Q ss_pred EEEee--ecCCcccE-EEEeeeccccCCeEEEEecCCC--C-CcccceeeEeec-----CCCCceEEEEcCCCCCCCCCe
Q 040307 22 TVAWS--VRHDRKSR-LAVGSFLEDYSNKIELVNFNPE--T-SDFSADNRLIFD-----HPYTPTNIAFFPSEETLNPDI 90 (339)
Q Consensus 22 ~i~~s--p~~~~~~~-la~g~~~~~~~~~i~i~~~~~~--~-~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~~~~~ 90 (339)
...|+ || ++. |+.+. +....||.++.. + +.... + .. |...+..++|+||+ +.
T Consensus 81 ~~~~~~SPD---g~~~la~~~-----~~~~~l~~~~~~~~g~~~~~~---l-~~~~~~~~~~~~~~~~~spDg-----~~ 143 (662)
T 3azo_A 81 PWAGVPRPA---GGPLLVFTH-----FGDQRLYAFEPDAPGGAVPRP---L-TPVSAVGGGLRWADPVLLPER-----GE 143 (662)
T ss_dssp CEEEECCSS---SSCEEEEEB-----TTTCCEEEECTTSTTCCCCEE---C-SCCCCSTTCEEEEEEEEETTT-----TE
T ss_pred cceeeeecC---CCeEEEEEE-----CCCCeEEEEcCCCCCCCCCEe---c-cCCccCCCCccccCcEECCCC-----CE
Confidence 56666 99 888 88776 324445556654 2 33322 1 22 56678999999999 77
Q ss_pred EEEeC-C-----------cEEEEeecC------CcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCC------
Q 040307 91 VATSG-D-----------SLRLWEIHD------DRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVD------ 145 (339)
Q Consensus 91 la~~~-~-----------~i~iw~~~~------~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------ 145 (339)
|+.++ + .|++|++.+ ++ . ..+. .+. ..+..++|+| |+++|+.++.+
T Consensus 144 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~-~~l~~~~~-----~~~~~~~~Sp-DG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 144 VWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA--V-RELSDDAH-----RFVTGPRLSP-DGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp EEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG--S-EESSCSCS-----SEECCCEECT-TSSEEEEEEECTTCCTT
T ss_pred EEEEEecccCCCCCCceeEEEEEECCCCccccCCc--e-eEEEecCC-----CcccCceECC-CCCEEEEEECCCCCCCC
Confidence 76654 2 688999887 44 2 2333 333 5677899998 99999987755
Q ss_pred --CeEEEEECC-CC---eeeeeeeccCCceeEEEec-CCcEEEEEeCCC--cEEEEECCCCcceeeEEeCCCCCC-----
Q 040307 146 --TTCVIWDID-RE---ILETQLVAHDREVYDISWG-GFNVFASVSGDC--SVRVFDLRDKERSTIIYENPVQDC----- 211 (339)
Q Consensus 146 --~~v~i~d~~-~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~----- 211 (339)
..|++||+. ++ +.......+...+..+.|+ ++++++++..++ .|.+||+.+++.... ... +..
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~--~~~~~~p~ 291 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL-CRR--EEEFAGPL 291 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES-SCC--SSBSSCCC
T ss_pred CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec-ccc--cccccCcc
Confidence 379999998 56 4444444557789999999 788888888888 566666655542222 111 111
Q ss_pred ---CeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEE-EeccCCCCeEEEEeCCCcEEEEEec
Q 040307 212 ---PLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGI-SWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 212 ---~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
.+..++|+| +++++++++. +. ++||.+......+..+..|...+..+ +++++. .++++++.+....+|.+.
T Consensus 292 w~~~~~~~~~~~-~~~~~~~~~~-~~-~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 292 WTPGMRWFAPLA-NGLIAVVHGK-GA-AVLGILDPESGELVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVELD 366 (662)
T ss_dssp CSTTCCSEEECT-TSCEEEEEBS-SS-CEEEEEETTTTEEEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEEEE
T ss_pred ccccCceEeEeC-CCEEEEEEEc-Cc-cEEEEEECCCCcEEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEEEE
Confidence 145788887 8888888888 77 88885443233467777777777777 544433 234445555555555444
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=4.4e-15 Score=137.13 Aligned_cols=277 Identities=8% Similarity=-0.029 Sum_probs=173.9
Q ss_pred ecCCcccEEEEeeeccccCCeEEEEecCCCCCcccce---eeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-----C--
Q 040307 27 VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSAD---NRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-----D-- 96 (339)
Q Consensus 27 p~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-----~-- 96 (339)
|+ |++++......+ ...-.||..+..++..... ..+..+|...+..++||||+ +.||.+. +
T Consensus 81 ~d---G~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg-----~~la~~~~~~G~~~~ 151 (710)
T 2xdw_A 81 KK---GKRYFYFYNTGL-QNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDG-----EYFAYGLSASGSDWV 151 (710)
T ss_dssp EE---TTEEEEEEECSS-CSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTS-----SEEEEEEEETTCSCE
T ss_pred EE---CCEEEEEEEcCC-ceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCC-----CEEEEEEcCCCCceE
Confidence 88 888887763111 1122455565444333210 01112344468899999999 7777542 2
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe----------------EEEEECCCCeee-
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT----------------CVIWDIDREILE- 159 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~----------------v~i~d~~~~~~~- 159 (339)
.|++||+.+++.... .+.. ..+..++|+| |++.|+.++.++. |++|++.+++..
T Consensus 152 ~i~v~d~~tg~~~~~-~~~~-------~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 222 (710)
T 2xdw_A 152 TIKFMKVDGAKELPD-VLER-------VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED 222 (710)
T ss_dssp EEEEEETTTTEEEEE-EEEE-------ECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred EEEEEECCCCCCCcc-cccC-------cccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc
Confidence 899999999873221 2222 2356799998 9999999888766 999999877522
Q ss_pred -eeee--ccCCceeEEEec-CCcEEEEEeC-----CCcEEEEECCC------Cc-ceeeEEeCCCCCCCeEEEEEecCCC
Q 040307 160 -TQLV--AHDREVYDISWG-GFNVFASVSG-----DCSVRVFDLRD------KE-RSTIIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 160 -~~~~--~~~~~v~~~~~~-~~~~l~~~~~-----d~~i~i~d~~~------~~-~~~~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
..+. .+...+..+.|+ ++++|+..+. +..|++||+.+ +. ....+... ...+.. .|+| ++
T Consensus 223 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~---~~~~~~-~~s~-dg 297 (710)
T 2xdw_A 223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN---FEGEYD-YVTN-EG 297 (710)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS---SSSCEE-EEEE-ET
T ss_pred eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC---CCcEEE-EEec-cC
Confidence 2222 245557889999 7888887764 56899999986 43 23333222 233333 4777 66
Q ss_pred CeEEEEeeCC---CeEEEEecCCCCC-ceEEEecCCC--CeeEEEeccCCCCeEEEEeCCCcEEEE--EecCCCCCCCCC
Q 040307 224 RFMATVGMDS---NKVVVLDIRFPTN-PVVVLSKHEG--SVNGISWAPLYGRRLCSVADDSRALIW--EVVGPGYRSGNG 295 (339)
Q Consensus 224 ~~l~~~~~d~---~~i~i~d~~~~~~-~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~iw--d~~~~~~~~~~~ 295 (339)
+.|+..+..+ ..|.+||+..... ....+..|.. .+..++|++++ .++++...|+..+|| ++..++
T Consensus 298 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~------ 370 (710)
T 2xdw_A 298 TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGA------ 370 (710)
T ss_dssp TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCC------
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCC------
Confidence 6666555432 1499999876431 2355555544 68889999776 688888888865555 543443
Q ss_pred CCCCcccceeeecccceeEEEEecCCCCceEEE-e---cCCeEEEEeC
Q 040307 296 GPSGDVEPELCYQSMAEINVVRWSPLELDWIAI-A---FVNKLQLLKV 339 (339)
Q Consensus 296 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~---~d~~v~~w~v 339 (339)
....+..+.+.+..++++|++..++.. + ..+.+.+|++
T Consensus 371 ------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 371 ------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp ------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred ------EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 112333356778999999998766533 2 3467777764
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.74 E-value=5.1e-14 Score=115.84 Aligned_cols=273 Identities=8% Similarity=-0.043 Sum_probs=179.1
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
..+.++++.|+ +.++++.. .++.|.+|+.+ +.+.. .........+.++++.+++ .++++.. +
T Consensus 15 ~~~~~i~~d~~---g~l~v~~~----~~~~v~~~d~~---~~~~~--~~~~~~~~~~~~i~~~~~g-----~l~v~~~~~ 77 (299)
T 2z2n_A 15 TGPYGITVSDK---GKVWITQH----KANMISCINLD---GKITE--YPLPTPDAKVMCLTISSDG-----EVWFTENAA 77 (299)
T ss_dssp CCEEEEEECTT---SCEEEEET----TTTEEEEECTT---CCEEE--EECSSTTCCEEEEEECTTS-----CEEEEETTT
T ss_pred CCccceEECCC---CCEEEEec----CCCcEEEEcCC---CCeEE--ecCCcccCceeeEEECCCC-----CEEEeCCCC
Confidence 57999999999 88766655 47889996544 33332 1112245678999999999 7877765 3
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee-eeccCCceeEEEe
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ-LVAHDREVYDISW 174 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~ 174 (339)
.|..|+.+ ++. ....+.... ..+.++++.| ++.++++...++.|.+||. +++.... .......+..+++
T Consensus 78 ~~i~~~~~~-g~~-~~~~~~~~~-----~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 78 NKIGRITKK-GII-KEYTLPNPD-----SAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp TEEEEECTT-SCE-EEEECSSTT-----CCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred CeEEEECCC-CcE-EEEeCCCcC-----CCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 89999876 331 111121122 5788999997 8888887777889999998 5543322 2234456889999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE-EEe
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLS 252 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~ 252 (339)
. +++++++...++.|..||. +++... . ..+.....+..+++++ ++++.++...++. |.+||. . +.... ...
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~-i~~~~~-~-g~~~~~~~~ 221 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITE-SGDITE-F-KIPTPASGPVGITKGN-DDALWFVEIIGNK-IGRITT-S-GEITEFKIP 221 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEECT-T-CCEEEEECS
T ss_pred cCCCCEEEEeCCCCEEEEEcC-CCcEEE-e-eCCCCCCcceeEEECC-CCCEEEEccCCce-EEEECC-C-CcEEEEECC
Confidence 8 6777777666789999998 544322 2 1222345688999997 6776665545666 999998 4 33222 123
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN 332 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~ 332 (339)
.+...+.++++++++ .++++...++.|..||.. .. ........+...+.++++ +++..+++.. .+
T Consensus 222 ~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~-g~-----------~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~ 286 (299)
T 2z2n_A 222 TPNARPHAITAGAGI-DLWFTEWGANKIGRLTSN-NI-----------IEEYPIQIKSAEPHGICF-DGETIWFAME-CD 286 (299)
T ss_dssp STTCCEEEEEECSTT-CEEEEETTTTEEEEEETT-TE-----------EEEEECSSSSCCEEEEEE-CSSCEEEEET-TT
T ss_pred CCCCCceeEEECCCC-CEEEeccCCceEEEECCC-Cc-----------eEEEeCCCCCCccceEEe-cCCCEEEEec-CC
Confidence 344678999999998 566666577899999973 22 111112234467899999 8887555544 55
Q ss_pred eEEEEe
Q 040307 333 KLQLLK 338 (339)
Q Consensus 333 ~v~~w~ 338 (339)
.+..++
T Consensus 287 ~l~~~~ 292 (299)
T 2z2n_A 287 KIGKLT 292 (299)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 555443
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1e-16 Score=137.50 Aligned_cols=232 Identities=11% Similarity=-0.025 Sum_probs=146.5
Q ss_pred CceEEEEcCCCCCCCCCeEEEeC----C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 73 TPTNIAFFPSEETLNPDIVATSG----D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~~----~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
.+..++|+|++ +.|+... + .|.+|++.+++ .......+. .....+.|+| +++.|+.++.++.
T Consensus 37 ~~~~~~~SpdG-----~~l~~~~~~~g~~~l~~~d~~~~~--~~~l~~~~~-----~~~~~~~~sp-dg~~l~~~~~~~~ 103 (396)
T 3c5m_A 37 YFYQKCFTQDG-----KKLLFAGDFDGNRNYYLLNLETQQ--AVQLTEGKG-----DNTFGGFIST-DERAFFYVKNELN 103 (396)
T ss_dssp CTTSCCBCTTS-----CEEEEEECTTSSCEEEEEETTTTE--EEECCCSSC-----BCTTTCEECT-TSSEEEEEETTTE
T ss_pred eeecCcCCCCC-----CEEEEEEecCCCceEEEEECCCCc--EEEeecCCC-----CccccceECC-CCCEEEEEEcCCc
Confidence 37888999999 6666542 2 68888888775 322222221 2222378998 9999999999999
Q ss_pred EEEEECCCCeeeeeeeccCCceeE-------------------EEec-CCcEEEEE-----eCCCcEEEEECCCCcceee
Q 040307 148 CVIWDIDREILETQLVAHDREVYD-------------------ISWG-GFNVFASV-----SGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~-~~~~l~~~-----~~d~~i~i~d~~~~~~~~~ 202 (339)
|++||+.+++.......+...... +.|+ +++.++.. ..+..|.+||+.+++....
T Consensus 104 l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 104 LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 999999888755554434332222 2334 34433332 3566899999988764433
Q ss_pred EEeCCCCCCCeEEEEEecCCCCeEEEEeeCC-----CeEEEEecCCCCCceEEEecC--CCCeeEEEeccCCCCeEEEEe
Q 040307 203 IYENPVQDCPLLRLEWNKADPRFMATVGMDS-----NKVVVLDIRFPTNPVVVLSKH--EGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-----~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~ 275 (339)
. . +...+..+.|+|.++..|+..+.+. ..|.+||+.. .. ...+..+ ...+..++|+|++. .|+.++
T Consensus 184 ~-~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~-~l~~~~ 256 (396)
T 3c5m_A 184 H-Q---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGS-AMAYVS 256 (396)
T ss_dssp E-E---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSS-CEEEEE
T ss_pred c-c---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCC-EEEEEe
Confidence 3 2 2457889999985566666555432 1388898864 32 3333333 23578899999994 666554
Q ss_pred CC-----CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecC-CCCceEEEe----------------cCCe
Q 040307 276 DD-----SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSP-LELDWIAIA----------------FVNK 333 (339)
Q Consensus 276 ~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~----------------~d~~ 333 (339)
.+ +.|++||+..+. ......... .. +.|+| +++.+++++ .+..
T Consensus 257 ~~~~~~~~~l~~~d~~~g~-------------~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPETLE-------------NEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp EETTTCCEEEEEECTTTCC-------------EEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred cCCCCccceEEEEECCCCC-------------eEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 33 349999988766 222221222 23 89999 998666544 2467
Q ss_pred EEEEeC
Q 040307 334 LQLLKV 339 (339)
Q Consensus 334 v~~w~v 339 (339)
|.+|++
T Consensus 322 i~~~d~ 327 (396)
T 3c5m_A 322 LYVLNT 327 (396)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 888864
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.73 E-value=5e-15 Score=120.21 Aligned_cols=238 Identities=9% Similarity=0.018 Sum_probs=162.6
Q ss_pred CeeEEEeeecCCcccEEE-EeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307 19 PISTVAWSVRHDRKSRLA-VGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD- 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la-~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~- 96 (339)
.+.+++++|+ +++++ +.. .++.|.+|+ ..+..... ....+...+.++++.+++ .++++..+
T Consensus 25 ~p~~i~~~~~---g~l~v~~~~----~~~~i~~~~--~~~~~~~~---~~~~~~~~p~~i~~~~~g-----~l~v~~~~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSA---GNVYVTSEG----MYGRVVKLA--TGSTGTTV---LPFNGLYQPQGLAVDGAG-----TVYVTDFNN 87 (270)
T ss_dssp CEEEEEECTT---CCEEEEECS----SSCEEEEEC--C-----EE---CCCCSCCSCCCEEECTTC-----CEEEEETTT
T ss_pred CccceEECCC---CCEEEEccC----CCCcEEEec--CCCcccce---EeeCCcCCcceeEECCCC-----CEEEEcCCC
Confidence 7889999999 88666 435 578898855 33332221 112334568899999998 77777655
Q ss_pred cEEEEeecCCcceeEEEee-cCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 97 SLRLWEIHDDRTELKSLLN-SNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
.|.+|+.+.... ..+. ... ..+.+++++| +++++++...++.|.+|+..+.............+.+++++
T Consensus 88 ~i~~~d~~~~~~---~~~~~~~~-----~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~ 158 (270)
T 1rwi_B 88 RVVTLAAGSNNQ---TVLPFDGL-----NYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD 158 (270)
T ss_dssp EEEEECTTCSCC---EECCCCSC-----SSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC
T ss_pred EEEEEeCCCceE---eeeecCCc-----CCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe
Confidence 999999876542 2221 111 4688999998 88888877778999999865544332222233457889999
Q ss_pred -CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC
Q 040307 176 -GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH 254 (339)
Q Consensus 176 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~ 254 (339)
+++++++...++.|.+||........... .....+..++++| ++.++++...++. |.+||... .........+
T Consensus 159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~-~g~l~v~~~~~~~-v~~~~~~~-~~~~~~~~~~ 232 (270)
T 1rwi_B 159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPF---TDITAPWGIAVDE-AGTVYVTEHNTNQ-VVKLLAGS-TTSTVLPFTG 232 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECTTTCCEEECCC---SSCCSEEEEEECT-TCCEEEEETTTSC-EEEECTTC-SCCEECCCCS
T ss_pred CCCCEEEEECCCCEEEEEecCCCceEeecc---cCCCCceEEEECC-CCCEEEEECCCCc-EEEEcCCC-CcceeeccCC
Confidence 67777777778899999988765322211 1225688999998 7766666556667 99999865 2222212223
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
...+.+++++|++ .++++...++.|+++++...+
T Consensus 233 ~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 233 LNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred CCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence 3578999999999 588888899999999988765
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=3.7e-13 Score=119.85 Aligned_cols=304 Identities=9% Similarity=0.002 Sum_probs=196.5
Q ss_pred CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEc----C
Q 040307 6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFF----P 81 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~ 81 (339)
.+++.+.++.....+..+.|+|+ +++|.+++ .++.|.+||+...+.+... . .........++|+ |
T Consensus 185 ~t~~v~~~i~~g~~p~~v~~SpD---Gr~lyv~~----~dg~V~viD~~~~t~~~v~--~--i~~G~~P~~ia~s~~~~p 253 (567)
T 1qks_A 185 STYEIKTVLDTGYAVHISRLSAS---GRYLFVIG----RDGKVNMIDLWMKEPTTVA--E--IKIGSEARSIETSKMEGW 253 (567)
T ss_dssp TTCCEEEEEECSSCEEEEEECTT---SCEEEEEE----TTSEEEEEETTSSSCCEEE--E--EECCSEEEEEEECCSTTC
T ss_pred CCCeEEEEEeCCCCccceEECCC---CCEEEEEc----CCCeEEEEECCCCCCcEeE--E--EecCCCCceeEEccccCC
Confidence 34566777777778889999999 99999988 6899999887423333332 2 2334457899999 6
Q ss_pred CCCCCCCCeEEEeC--C-cEEEEeecCCcceeEEEeecCC--Cc---cC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 040307 82 SEETLNPDIVATSG--D-SLRLWEIHDDRTELKSLLNSNK--TS---EF-SSAITSFDWAGFDTRRVATCSVDTTCVIWD 152 (339)
Q Consensus 82 ~~~~~~~~~la~~~--~-~i~iw~~~~~~~~~~~~~~~~~--~~---~~-~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d 152 (339)
++ ++++++. . .+.++|..+.+ .+..+.... .. .+ ...+..+..++....+++....+|.|.++|
T Consensus 254 DG-----k~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 254 ED-----KYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp TT-----TEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred CC-----CEEEEEEccCCeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 99 7777665 2 99999988876 554443211 00 00 136778888874455666667789999999
Q ss_pred CCCCeee--eeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcceeeEEe-C-CCCCCCeEEEEEecCCCCeE
Q 040307 153 IDREILE--TQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKERSTIIYE-N-PVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 153 ~~~~~~~--~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~-~~~~~~v~~~~~~p~~~~~l 226 (339)
....+.+ ..+ .......++.|+ ++++|+++. .++.|.++|+.+++....+.. . ..|.+.-..+ ++|..+.+.
T Consensus 327 ~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~ 404 (567)
T 1qks_A 327 YTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVW 404 (567)
T ss_dssp TTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred cCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEE
Confidence 8765422 223 234456788999 777776655 578999999999875544433 1 1122222222 577335555
Q ss_pred EEEee-CCCeEEEEecCCC------CCceEEEecCCCCeeEEEeccCCCCeEEEEeC-------CCcEEEEEecCCCCCC
Q 040307 227 ATVGM-DSNKVVVLDIRFP------TNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD-------DSRALIWEVVGPGYRS 292 (339)
Q Consensus 227 ~~~~~-d~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------dg~v~iwd~~~~~~~~ 292 (339)
+++.. ++. |.++|.... .+.+.++......-..+..+|++ ++|.+... .+.|.++|+.+.+. .
T Consensus 405 ~t~~~g~~~-Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~-~ 481 (567)
T 1qks_A 405 ATSHMGDDS-VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTG-D 481 (567)
T ss_dssp EEEBSSSSE-EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCC-S
T ss_pred EeCCCCCCe-EEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccc-c
Confidence 55543 355 999998752 23456666544444568899999 47776552 35999999998720 0
Q ss_pred CCCCCCCcccceeee---------cccceeEEEEecCCCCceEEEe-----cCCeEEEEe
Q 040307 293 GNGGPSGDVEPELCY---------QSMAEINVVRWSPLELDWIAIA-----FVNKLQLLK 338 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~---------~~~~~i~~~~~~p~~~~l~~~~-----~d~~v~~w~ 338 (339)
+........ .....+..+.|+|+|.++..+. .++.|.+++
T Consensus 482 ------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 482 ------GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp ------SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ------ccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 000111111 1245789999999999876553 268888876
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=5.4e-15 Score=119.98 Aligned_cols=234 Identities=10% Similarity=-0.008 Sum_probs=156.3
Q ss_pred CceEEEEcCCCCCCCCCeEE-EeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307 73 TPTNIAFFPSEETLNPDIVA-TSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la-~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~ 149 (339)
.+.++++++++ ++++ +.. + .|.+|+..+.. ......... ..+.++++++ +++++++.. ++.|.
T Consensus 25 ~p~~i~~~~~g-----~l~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~-----~~p~~i~~~~-~g~l~v~~~-~~~i~ 90 (270)
T 1rwi_B 25 SPSGVAVDSAG-----NVYVTSEGMYGRVVKLATGSTG--TTVLPFNGL-----YQPQGLAVDG-AGTVYVTDF-NNRVV 90 (270)
T ss_dssp CEEEEEECTTC-----CEEEEECSSSCEEEEECC-------EECCCCSC-----CSCCCEEECT-TCCEEEEET-TTEEE
T ss_pred CccceEECCCC-----CEEEEccCCCCcEEEecCCCcc--cceEeeCCc-----CCcceeEECC-CCCEEEEcC-CCEEE
Confidence 67899999999 7777 533 3 89999876553 111111111 4577899997 778666655 88999
Q ss_pred EEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307 150 IWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 150 i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
+||................+..++++ +++++++...++.|.+|+..+...... .. .....+..++++| +++++++
T Consensus 91 ~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~-~~~~~p~~i~~~~-~g~l~v~ 166 (270)
T 1rwi_B 91 TLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PF-TGLNDPDGVAVDN-SGNVYVT 166 (270)
T ss_dssp EECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CC-CSCCSCCCEEECT-TCCEEEE
T ss_pred EEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--cc-ccCCCceeEEEeC-CCCEEEE
Confidence 99987654322211223568899999 677777777788999998665442221 11 1223567899998 7776666
Q ss_pred EeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec
Q 040307 229 VGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ 308 (339)
Q Consensus 229 ~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 308 (339)
...++. |.+||... .........+...+.+++++++| .++++...++.|.+|+..... .......
T Consensus 167 ~~~~~~-i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~------------~~~~~~~ 231 (270)
T 1rwi_B 167 DTDNNR-VVKLEAES-NNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT------------STVLPFT 231 (270)
T ss_dssp EGGGTE-EEEECTTT-CCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSC------------CEECCCC
T ss_pred ECCCCE-EEEEecCC-CceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCc------------ceeeccC
Confidence 555666 99999875 32222222233578899999998 577777788899999986644 1111122
Q ss_pred ccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 309 SMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+...+.+++++|+|..+++...++.|+++++
T Consensus 232 ~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 232 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp SCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred CCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 3356899999999986667778999999874
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=1.2e-15 Score=140.57 Aligned_cols=278 Identities=11% Similarity=-0.026 Sum_probs=173.3
Q ss_pred eeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee---EeecCCCCceEEEEcCCCCCCCCCeEE-----EeCC
Q 040307 25 WSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR---LIFDHPYTPTNIAFFPSEETLNPDIVA-----TSGD 96 (339)
Q Consensus 25 ~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~~~la-----~~~~ 96 (339)
.+|+ |.+++......+ ...-.||..+..++....... +..+|...+..++||||+ ++|| .|++
T Consensus 75 p~~d---G~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-----~~la~~~~~~G~~ 145 (695)
T 2bkl_A 75 PSRR---NGRFFYVRTHKD-KEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG-----KKVAFAQKPNAAD 145 (695)
T ss_dssp CEEE---TTEEEEEEECTT-CSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS-----SEEEEEEEETTCS
T ss_pred CEEE---CCEEEEEEEcCC-CeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC-----CEEEEEECCCCCc
Confidence 3488 888888774111 114556656544443332000 011355578999999999 7887 3443
Q ss_pred --cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe-------------EEEEECCCCe----
Q 040307 97 --SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT-------------CVIWDIDREI---- 157 (339)
Q Consensus 97 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-------------v~i~d~~~~~---- 157 (339)
.|++||+.+++......+.. .....++|+| +++.|+.++.|.. |++|++.++.
T Consensus 146 ~~~i~v~dl~tg~~~~~~~~~~-------~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 217 (695)
T 2bkl_A 146 EAVLHVIDVDSGEWSKVDVIEG-------GKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT 217 (695)
T ss_dssp CCEEEEEETTTCCBCSSCCBSC-------CTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE
T ss_pred eEEEEEEECCCCCCcCCcccCc-------ccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce
Confidence 89999999987320111111 1125789998 9999999988776 9999998776
Q ss_pred eeeeeeccCCceeEEEec-CCcEEEEEeCCC----cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-
Q 040307 158 LETQLVAHDREVYDISWG-GFNVFASVSGDC----SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM- 231 (339)
Q Consensus 158 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~- 231 (339)
.+.....+...+..+.|+ ++++|+.++.++ .|+++|..++. ...+... ...+....| | ++.+++....
T Consensus 218 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~---~~~~~~~~~-~-~g~l~~~s~~~ 291 (695)
T 2bkl_A 218 VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKG---VGAKYEVHA-W-KDRFYVLTDEG 291 (695)
T ss_dssp EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEEC---SSCCEEEEE-E-TTEEEEEECTT
T ss_pred EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecC---CCceEEEEe-c-CCcEEEEECCC
Confidence 222333455678899999 788888777665 67777665544 2333322 234556666 4 4454444332
Q ss_pred --CCCeEEEEecCCCCC-ceEEEecC--CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307 232 --DSNKVVVLDIRFPTN-PVVVLSKH--EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306 (339)
Q Consensus 232 --d~~~i~i~d~~~~~~-~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (339)
++. |.+||+..... ....+..+ ...+..++|+ ++ .++++...|+..+||.+.... . ....+
T Consensus 292 ~~~~~-l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g----------~-~~~~l 357 (695)
T 2bkl_A 292 APRQR-VFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKG----------K-PVRTV 357 (695)
T ss_dssp CTTCE-EEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTC----------C-EEEEC
T ss_pred CCCCE-EEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC----------C-eeEEe
Confidence 344 99999876321 12444433 4467888888 54 688999999999999877433 0 11122
Q ss_pred e-cccceeEEEEecCCCCceEEEe----cCCeEEEEeC
Q 040307 307 Y-QSMAEINVVRWSPLELDWIAIA----FVNKLQLLKV 339 (339)
Q Consensus 307 ~-~~~~~i~~~~~~p~~~~l~~~~----~d~~v~~w~v 339 (339)
. .....|..++++|++..++... ..+.|++|++
T Consensus 358 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 358 QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 2 2356788899999987666322 3467888764
No 184
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=1.1e-14 Score=123.16 Aligned_cols=273 Identities=10% Similarity=0.054 Sum_probs=166.9
Q ss_pred ccEEEEeee--ccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-----------C-c
Q 040307 32 KSRLAVGSF--LEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-----------D-S 97 (339)
Q Consensus 32 ~~~la~g~~--~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-----------~-~ 97 (339)
++++.+... ....|+.|.+||. .+.+... .+ ..+..+ .++|+|++ +++.++. + .
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~--~t~~~~~--~i-~~g~~p--~i~~spdg-----~~lyv~~~~~~~~~~g~~~~~ 82 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDY--TNGKFLG--MV-PTAFNG--HVQVSNDG-----KKIYTMTTYHERITRGKRSDV 82 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEET--TTCCEEE--EE-ECCEEE--EEEECTTS-----SEEEEEEEEETTSSSSCEEEE
T ss_pred CCEEEEECCCCCccccCeEEEEEC--CCCeEEE--Ee-cCCCCC--ceEECCCC-----CEEEEEEecccccccCCCCCE
Confidence 555555431 1113679999664 3444433 33 223333 89999999 6665542 2 7
Q ss_pred EEEEeecCCcceeEEEeecCCC-ccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeee-eeccCCceeEEE
Q 040307 98 LRLWEIHDDRTELKSLLNSNKT-SEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQ-LVAHDREVYDIS 173 (339)
Q Consensus 98 i~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~-~~~~~~~v~~~~ 173 (339)
|.+||..+.+ ....+..... .........++++| ++++|+++.. ++.|.+||+.+++.+.. +. ... ...+.
T Consensus 83 v~v~d~~t~~--~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~ 157 (361)
T 2oiz_A 83 VEVWDADKLT--FEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVI 157 (361)
T ss_dssp EEEEETTTCC--EEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEE
T ss_pred EEEEECcCCc--EEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeE
Confidence 9999998776 5555543210 00013456799998 9999988874 58999999999988777 54 222 22244
Q ss_pred ec--CCcEEEEEeCCCcEEEEECCCCccee-eEE---eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc
Q 040307 174 WG--GFNVFASVSGDCSVRVFDLRDKERST-IIY---ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP 247 (339)
Q Consensus 174 ~~--~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~---~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~ 247 (339)
+. ....+++.+.||.+.+|++....... ... .......+ ..+.+.| ++..++..+.++. +.++|+......
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~-v~v~d~~~~~~~ 234 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGN-VYSADFSGDEVK 234 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSE-EEEEECSSSSCE
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCe-EEEEEecCCCce
Confidence 44 24688889999999999987533222 111 00011122 2344455 5666666777777 999998753221
Q ss_pred e-EEEec------CC----CCeeEEEeccCCCCeEEEEe----------CCCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307 248 V-VVLSK------HE----GSVNGISWAPLYGRRLCSVA----------DDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306 (339)
Q Consensus 248 ~-~~~~~------~~----~~v~~~~~~p~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (339)
+ ..+.. +. .....++|+|++.+++++.. ..+.|.+||+.+.+ .+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-------------~v~~ 301 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-------------RVAR 301 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-------------EEEE
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc-------------EEEE
Confidence 1 11110 00 11223789999854444433 13479999998877 3433
Q ss_pred ecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 307 YQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 307 ~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
..... +.+++|+|+|++|++++. +.|.+|++
T Consensus 302 i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 302 IPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp EECTT-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred EecCC-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 32233 999999999998777776 99999984
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=1.7e-14 Score=118.82 Aligned_cols=227 Identities=7% Similarity=-0.075 Sum_probs=153.0
Q ss_pred cCCCCceEEEEcCCCCCCCCC-eEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 69 DHPYTPTNIAFFPSEETLNPD-IVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~-~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+.....+++|+|++ + +++++. + .|..|+.+++ ...+..+. ..+.+++++| +++++++...+
T Consensus 25 ~~~~~~eg~~~d~~g-----~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~-----~~~~~l~~~~-dg~l~v~~~~~ 89 (296)
T 3e5z_A 25 DGFTWTEGPVYVPAR-----SAVIFSDVRQNRTWAWSDDGQ----LSPEMHPS-----HHQNGHCLNK-QGHLIACSHGL 89 (296)
T ss_dssp CCCSSEEEEEEEGGG-----TEEEEEEGGGTEEEEEETTSC----EEEEESSC-----SSEEEEEECT-TCCEEEEETTT
T ss_pred cCCccccCCeEeCCC-----CEEEEEeCCCCEEEEEECCCC----eEEEECCC-----CCcceeeECC-CCcEEEEecCC
Confidence 455667899999999 6 777766 3 9999998875 23333343 6789999998 88888877777
Q ss_pred CeEEEEECCCCeeeeeeecc----CCceeEEEec-CCcEEEEEeC-----------------CCcEEEEECCCCcceeeE
Q 040307 146 TTCVIWDIDREILETQLVAH----DREVYDISWG-GFNVFASVSG-----------------DCSVRVFDLRDKERSTII 203 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~----~~~v~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~ 203 (339)
+.|.+||..+++........ ...+.+++++ +++++++.+. .+.|..++.. ++ ....
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP 167 (296)
T ss_dssp TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence 99999999877644332211 2346679999 6887776321 2355555554 32 2222
Q ss_pred EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc---eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcE
Q 040307 204 YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP---VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRA 280 (339)
Q Consensus 204 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 280 (339)
.. +......++|+| +++.+++.+.++. |.+||+...+.. ...+..+...+.+++++++| +++++. ++.|
T Consensus 168 ~~---~~~~~~gi~~s~-dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v 239 (296)
T 3e5z_A 168 IR---DRVKPNGLAFLP-SGNLLVSDTGDNA-THRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGV 239 (296)
T ss_dssp EC---CCSSEEEEEECT-TSCEEEEETTTTE-EEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEE
T ss_pred ec---CCCCCccEEECC-CCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeE
Confidence 22 345678999998 8888866555666 999998733333 22333345567899999999 455555 7899
Q ss_pred EEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEe-cCCCCceEEEecCCeEE
Q 040307 281 LIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRW-SPLELDWIAIAFVNKLQ 335 (339)
Q Consensus 281 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-~p~~~~l~~~~~d~~v~ 335 (339)
.+|+.. ++ .+ ....+.. +++++| +|+++.|++++.++..+
T Consensus 240 ~~~~~~-g~-------------~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 240 HVLTPD-GD-------------ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp EEECTT-SC-------------EEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred EEECCC-CC-------------EEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 999976 33 23 2333444 899999 58888777777764433
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=2.8e-14 Score=119.24 Aligned_cols=258 Identities=7% Similarity=-0.067 Sum_probs=167.8
Q ss_pred cCCeEEEEecCCCCCcccceeeE---eecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC
Q 040307 44 YSNKIELVNFNPETSDFSADNRL---IFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK 118 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~ 118 (339)
.++.|.++|. ++.++...... ..........+.+.. + +++++.. + .|.+||..+.+ .+.++...
T Consensus 15 ~~~~l~~~d~--~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~-----~lyv~~~~~~~v~viD~~t~~--~~~~i~~~- 83 (328)
T 3dsm_A 15 SNATLSYYDP--ATCEVENEVFYRANGFKLGDVAQSMVIRD-G-----IGWIVVNNSHVIFAIDINTFK--EVGRITGF- 83 (328)
T ss_dssp CCBEEEEEET--TTTEEECSHHHHHHSSCCBSCEEEEEEET-T-----EEEEEEGGGTEEEEEETTTCC--EEEEEECC-
T ss_pred CCceEEEEEC--CCCEEhhhhHhhhcCcccCccceEEEEEC-C-----EEEEEEcCCCEEEEEECcccE--EEEEcCCC-
Confidence 4789999554 44444321000 011224467788754 3 5656555 3 99999999887 55555432
Q ss_pred CccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC-----CceeEEEecCCcEEEEEe-CCCcEEEE
Q 040307 119 TSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD-----REVYDISWGGFNVFASVS-GDCSVRVF 192 (339)
Q Consensus 119 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~-~d~~i~i~ 192 (339)
.....+++++ ++.++++...++.|.+||+.+++....+.... .....+++.++.++++.. .++.|.++
T Consensus 84 -----~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~vi 157 (328)
T 3dsm_A 84 -----TSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKI 157 (328)
T ss_dssp -----SSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEE
T ss_pred -----CCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEE
Confidence 5678999987 77555554489999999999998776665322 145567775444444443 48899999
Q ss_pred ECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC----------CCeEEEEecCCCCCceEEEecC-CCCeeEE
Q 040307 193 DLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD----------SNKVVVLDIRFPTNPVVVLSKH-EGSVNGI 261 (339)
Q Consensus 193 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~ 261 (339)
|+.+.+....+... .....++++| ++++++++..+ +. |.++|..+ .+....+... ......+
T Consensus 158 D~~t~~~~~~i~~g----~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t-~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 158 DTETDKVVDELTIG----IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPS-LYRIDAET-FTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp ETTTTEEEEEEECS----SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCE-EEEEETTT-TEEEEEEECCTTCCCEEE
T ss_pred ECCCCeEEEEEEcC----CCccceEEcC-CCCEEEEECCCccCCccccCCce-EEEEECCC-CeEEEEEecCCCCCceeE
Confidence 99988755444332 3456889998 78876665544 55 99999876 4444455432 2368899
Q ss_pred EeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceE-EE----ecCCeEE
Q 040307 262 SWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWI-AI----AFVNKLQ 335 (339)
Q Consensus 262 ~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~-~~----~~d~~v~ 335 (339)
+|+|++ +.|.++.. .|.+||..+.+ +...... ........++++|++..++ +. ..++.|.
T Consensus 231 a~~~d~-~~lyv~~~--~v~~~d~~t~~-----------~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~ 296 (328)
T 3dsm_A 231 QLNGTR-DTLYWINN--DIWRMPVEADR-----------VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296 (328)
T ss_dssp EECTTS-CEEEEESS--SEEEEETTCSS-----------CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEE
T ss_pred EEecCC-CEEEEEcc--EEEEEECCCCc-----------eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEE
Confidence 999998 47776654 89999987766 1011111 1245688999999554455 44 4678899
Q ss_pred EEeC
Q 040307 336 LLKV 339 (339)
Q Consensus 336 ~w~v 339 (339)
+|+.
T Consensus 297 v~d~ 300 (328)
T 3dsm_A 297 RYSP 300 (328)
T ss_dssp EECT
T ss_pred EECC
Confidence 8863
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=3.3e-14 Score=117.05 Aligned_cols=235 Identities=11% Similarity=0.013 Sum_probs=159.9
Q ss_pred cCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 17 QWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
.....+++|+|+ ++ +++++. .++.|..|+.+ +. .. .+ ..+...+.+++++|++ +++++..
T Consensus 27 ~~~~eg~~~d~~---g~~l~~~~~----~~~~i~~~~~~--~~-~~---~~-~~~~~~~~~l~~~~dg-----~l~v~~~ 87 (296)
T 3e5z_A 27 FTWTEGPVYVPA---RSAVIFSDV----RQNRTWAWSDD--GQ-LS---PE-MHPSHHQNGHCLNKQG-----HLIACSH 87 (296)
T ss_dssp CSSEEEEEEEGG---GTEEEEEEG----GGTEEEEEETT--SC-EE---EE-ESSCSSEEEEEECTTC-----CEEEEET
T ss_pred CccccCCeEeCC---CCEEEEEeC----CCCEEEEEECC--CC-eE---EE-ECCCCCcceeeECCCC-----cEEEEec
Confidence 456779999999 88 677777 68899986654 33 22 22 3466779999999999 8888775
Q ss_pred C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE----Ee-------------CCCeEEEEECCCC
Q 040307 96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT----CS-------------VDTTCVIWDIDRE 156 (339)
Q Consensus 96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~-------------~d~~v~i~d~~~~ 156 (339)
+ .|.+|+..+++.... ....... ....+..++++| +++++++ |+ ..+.|..++.. +
T Consensus 88 ~~~~i~~~d~~~g~~~~~--~~~~~~~-~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 88 GLRRLERQREPGGEWESI--ADSFEGK-KLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp TTTEEEEECSTTCCEEEE--ECEETTE-ECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred CCCeEEEEcCCCCcEEEE--eeccCCC-CCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 3 899999977763222 2111100 013567899998 8888887 33 13466666655 4
Q ss_pred eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECC-CCcc-e-eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 157 ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLR-DKER-S-TIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 157 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~-~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
+ ...+..+......++|+ +++.+++.+.++.|.+||+. .+.. . ...+. .+...+..+++++ +|+++++. +
T Consensus 163 ~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~p~~i~~d~-~G~l~v~~--~ 236 (296)
T 3e5z_A 163 T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT--VEPGKTDGLRVDA-GGLIWASA--G 236 (296)
T ss_dssp C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC--CSSSCCCSEEEBT-TSCEEEEE--T
T ss_pred C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee--CCCCCCCeEEECC-CCCEEEEc--C
Confidence 4 33444556677899999 78877777778999999997 3332 1 12222 2345667899997 78766655 6
Q ss_pred CCeEEEEecCCCCCceEEEecCCCCeeEEEe-ccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 233 SNKVVVLDIRFPTNPVVVLSKHEGSVNGISW-APLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 233 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+. |.+||.. ++.+..+..+.. +.+++| +|++ +.|++++.+ .+|.++...
T Consensus 237 ~~-v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~-~~L~v~t~~---~l~~~~~~~ 286 (296)
T 3e5z_A 237 DG-VHVLTPD--GDELGRVLTPQT-TSNLCFGGPEG-RTLYMTVST---EFWSIETNV 286 (296)
T ss_dssp TE-EEEECTT--SCEEEEEECSSC-CCEEEEESTTS-CEEEEEETT---EEEEEECSC
T ss_pred Ce-EEEECCC--CCEEEEEECCCC-ceeEEEECCCC-CEEEEEcCC---eEEEEEccc
Confidence 66 9999985 556777777777 999999 5887 577777765 355555443
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=1.6e-14 Score=133.46 Aligned_cols=247 Identities=12% Similarity=0.051 Sum_probs=163.5
Q ss_pred CeeEEEeeecCCcccEEEEeeecccc-CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDY-SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
.+..++|||| |++||++...++. ...|++|++. +++... .. ..+ ..+..++|+||+ +.|+.++ +
T Consensus 126 ~~~~~~~SPD---g~~la~~~~~~G~~~~~i~v~d~~--tg~~~~--~~-~~~-~~~~~~~wspDg-----~~l~~~~~~ 191 (710)
T 2xdw_A 126 ALRGYAFSED---GEYFAYGLSASGSDWVTIKFMKVD--GAKELP--DV-LER-VKFSCMAWTHDG-----KGMFYNAYP 191 (710)
T ss_dssp EEEEEEECTT---SSEEEEEEEETTCSCEEEEEEETT--TTEEEE--EE-EEE-ECSCCEEECTTS-----SEEEEEECC
T ss_pred EEEEEEECCC---CCEEEEEEcCCCCceEEEEEEECC--CCCCCc--cc-ccC-cccceEEEEeCC-----CEEEEEEEC
Confidence 5788999999 9999988731111 1278886654 444443 11 221 236789999999 6666554 3
Q ss_pred -c----------------EEEEeecCCcceeEEEeec--CCCccCCCCEEEEEEcCCCCCEEEEEeC-----CCeEEEEE
Q 040307 97 -S----------------LRLWEIHDDRTELKSLLNS--NKTSEFSSAITSFDWAGFDTRRVATCSV-----DTTCVIWD 152 (339)
Q Consensus 97 -~----------------i~iw~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~~v~i~d 152 (339)
. |++|++.+++......+.. +. ..+..+.|+| ++++|+.++. +..|++||
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~-----~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP-----KWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT-----TCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEE
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC-----eEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEE
Confidence 3 9999998875332233332 22 4578999998 9998888765 67899999
Q ss_pred CCC------Ce-eeeeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEEECCCCcc--eeeEEeCCCCCCCeEEEEE
Q 040307 153 IDR------EI-LETQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVFDLRDKER--STIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 153 ~~~------~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~ 218 (339)
+.+ +. ....+..+...+... |+ +++.|+..+.. ..|.+||+.++.. ...+... .....+..++|
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~ 343 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE-HEKDVLEWVAC 343 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-CSSCEEEEEEE
T ss_pred CcccccccCCccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC-CCCCeEEEEEE
Confidence 976 43 355566666665553 55 66766655543 3599999987642 2233322 11135778999
Q ss_pred ecCCCCeEEEEeeCCC-eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCC
Q 040307 219 NKADPRFMATVGMDSN-KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPG 289 (339)
Q Consensus 219 ~p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~ 289 (339)
++ ++.++++...++. .|.+||+.. ++.+..+..+.+.+..+.++|++..++++.+ ..+.+.+||+.+++
T Consensus 344 ~~-~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 344 VR-SNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ET-TTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred Ec-CCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 85 7778888888875 366777654 4556777777788999999999854444444 34789999987654
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=2.3e-14 Score=120.04 Aligned_cols=238 Identities=9% Similarity=0.066 Sum_probs=159.3
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEe-CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATS-GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v 148 (339)
...|.++.|+++. ..++.. ++ .++.| ..+ ....+..+. ..+.+++|+| ++++++++..++.|
T Consensus 5 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~--~~~~~~~~~-----~~~~~~~~~~-~g~l~~~~~~~~~i 68 (333)
T 2dg1_A 5 QQDLPTLFYSGKS-----NSAVPIISESELQTI---TAE--PWLEISKKG-----LQLEGLNFDR-QGQLFLLDVFEGNI 68 (333)
T ss_dssp -CCCCBCCSCGGG-----GCSSCCCCGGGSCEE---ECE--EEEEEESSC-----CCEEEEEECT-TSCEEEEETTTCEE
T ss_pred ccccceeeecCCc-----cceeEEeecccCccc---ccc--eeEEEeccC-----ccccCcEECC-CCCEEEEECCCCEE
Confidence 3457888999988 444443 34 88888 222 445555544 5678999997 88888888889999
Q ss_pred EEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCC
Q 040307 149 VIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADP 223 (339)
Q Consensus 149 ~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 223 (339)
.+||..+++.......+...+.+++++ +++++++...+ +.|.+||..+....... ........+..++++| ++
T Consensus 69 ~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~-~g 146 (333)
T 2dg1_A 69 FKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDS-KG 146 (333)
T ss_dssp EEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECT-TS
T ss_pred EEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECC-CC
Confidence 999998877554443466789999999 67777776666 68999998877643222 2112345789999998 77
Q ss_pred CeEEEEee------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCC
Q 040307 224 RFMATVGM------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGP 297 (339)
Q Consensus 224 ~~l~~~~~------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 297 (339)
+++++... .+. |..+|... .+ +..+..+...+..++|+|++..++++.+.++.|.+|++.....
T Consensus 147 ~l~v~~~~~~~~~~~~~-l~~~~~~~-~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~------- 216 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGG-VYYVSPDF-RT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV------- 216 (333)
T ss_dssp CEEEEECCCBTTBCCEE-EEEECTTS-CC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS-------
T ss_pred CEEEEeccccccCCCce-EEEEeCCC-CE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc-------
Confidence 77766543 133 66666543 22 3333333456789999999842445555678999999964320
Q ss_pred CCcccc---eee--ecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 298 SGDVEP---ELC--YQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 298 ~~~~~~---~~~--~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.... ... ......+..++++++|..+++...++.|.+|+
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 217 --TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp --SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred --CcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence 0000 011 11114678899999998666777788999886
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=2e-15 Score=139.04 Aligned_cols=246 Identities=10% Similarity=0.014 Sum_probs=160.6
Q ss_pred CeeEEEeeecCCcccEEEEeeec-cccCCeEEEEecCCCCCccc-ceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFL-EDYSNKIELVNFNPETSDFS-ADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG- 95 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~-~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~- 95 (339)
.+.+++|||| |++||.+... +..+..|++|++... +.. . .. ... .....++|+||+ +.|+.++
T Consensus 122 ~~~~~~~SPD---G~~la~~~~~~G~~~~~i~v~dl~tg--~~~~~--~~-~~~-~~~~~~~wspDg-----~~l~~~~~ 187 (695)
T 2bkl_A 122 SLGTWAVSWD---GKKVAFAQKPNAADEAVLHVIDVDSG--EWSKV--DV-IEG-GKYATPKWTPDS-----KGFYYEWL 187 (695)
T ss_dssp EEEEEEECTT---SSEEEEEEEETTCSCCEEEEEETTTC--CBCSS--CC-BSC-CTTCCCEECTTS-----SEEEEEEC
T ss_pred EEEEEEECCC---CCEEEEEECCCCCceEEEEEEECCCC--CCcCC--cc-cCc-ccccceEEecCC-----CEEEEEEe
Confidence 6889999999 9999976531 113568999776543 333 1 00 111 112689999999 6666654
Q ss_pred C-c-------------EEEEeecCCcce--eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC----eEEEEECCC
Q 040307 96 D-S-------------LRLWEIHDDRTE--LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT----TCVIWDIDR 155 (339)
Q Consensus 96 ~-~-------------i~iw~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~----~v~i~d~~~ 155 (339)
+ . |++|++.+++.. .+.....+. ..+..+.|+| ++++|+.++.++ .|++++..+
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~-----~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~ 261 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP-----TTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGE 261 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT-----TCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTC
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC-----EEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCC
Confidence 3 4 999999887632 332333333 5688999998 999888877666 677777655
Q ss_pred CeeeeeeeccCCceeEEEecCCcEEEEEe---CCCcEEEEECCCCcc--eeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307 156 EILETQLVAHDREVYDISWGGFNVFASVS---GDCSVRVFDLRDKER--STIIYENPVQDCPLLRLEWNKADPRFMATVG 230 (339)
Q Consensus 156 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 230 (339)
++ ...+..+...+....++++.+++... .++.|.+||+.++.. ...+... .....+..++|+ ++.++++..
T Consensus 262 ~~-~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~l~~~~~~--~~~lv~~~~ 337 (695)
T 2bkl_A 262 KD-FRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE-DSSASLLSVSIV--GGHLSLEYL 337 (695)
T ss_dssp SS-CEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC-CSSCEEEEEEEE--TTEEEEEEE
T ss_pred Cc-eEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC-CCCCeEEEEEEE--CCEEEEEEE
Confidence 54 44455566666666677555444444 257899999987653 1232322 123457788887 667888888
Q ss_pred eCCCeEEEEecCCCCCceEEEecC-CCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCC
Q 040307 231 MDSNKVVVLDIRFPTNPVVVLSKH-EGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPG 289 (339)
Q Consensus 231 ~d~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~ 289 (339)
.++. .+||.+...+.....+..+ ...+..++++|+++.++++.+ ..+.|++||+.+++
T Consensus 338 ~dg~-~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 338 KDAT-SEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ETTE-EEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ECCE-EEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8887 7777655334445556555 567888999999853444443 34689999987765
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=2.7e-13 Score=120.75 Aligned_cols=272 Identities=13% Similarity=0.087 Sum_probs=175.4
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeec--CCc
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIH--DDR 107 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~--~~~ 107 (339)
+.++++.. .++.|.++| ..+.+... . ......+..+.|+|++ +++.+++ + .|.+||+. +.+
T Consensus 167 ~~~~V~~~----~~~~V~viD--~~t~~v~~--~--i~~g~~p~~v~~SpDG-----r~lyv~~~dg~V~viD~~~~t~~ 231 (567)
T 1qks_A 167 NLFSVTLR----DAGQIALID--GSTYEIKT--V--LDTGYAVHISRLSASG-----RYLFVIGRDGKVNMIDLWMKEPT 231 (567)
T ss_dssp GEEEEEET----TTTEEEEEE--TTTCCEEE--E--EECSSCEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCC
T ss_pred ceEEEEeC----CCCeEEEEE--CCCCeEEE--E--EeCCCCccceEECCCC-----CEEEEEcCCCeEEEEECCCCCCc
Confidence 44455555 689999955 44544443 2 3344567899999999 6666555 4 99999996 554
Q ss_pred ceeEEEeecCCCccCCCCEEEEEEc----CCCCCEEEEEeC-CCeEEEEECCCCeeeeeeecc----------CC-ceeE
Q 040307 108 TELKSLLNSNKTSEFSSAITSFDWA----GFDTRRVATCSV-DTTCVIWDIDREILETQLVAH----------DR-EVYD 171 (339)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~----------~~-~v~~ 171 (339)
.+..+... .....++|+ | ++++++++.. ++.|.++|..+.+.+..+... .. .+..
T Consensus 232 --~v~~i~~G------~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 232 --TVAEIKIG------SEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp --EEEEEECC------SEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred --EeEEEecC------CCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 55556543 345789999 5 8887777665 599999999998887766421 12 5667
Q ss_pred EEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 172 ISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 172 ~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
+..+ + ..+++....+|.|.++|....+........ .......+.|+| ++++++++......|.++|+.+ .+.+.
T Consensus 303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~--~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t-~kl~~ 378 (567)
T 1qks_A 303 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE-GKLVA 378 (567)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT-TEEEE
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee--ccccccCceECC-CCCEEEEEeCCCCeEEEEECCC-CcEEE
Confidence 7777 3 456666677899999999876533322221 234677899998 8888877665444499999987 45555
Q ss_pred EEec-----CCCCeeEEE-eccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceee-ecccceeEEEEecCC
Q 040307 250 VLSK-----HEGSVNGIS-WAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQSMAEINVVRWSPL 321 (339)
Q Consensus 250 ~~~~-----~~~~v~~~~-~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~p~ 321 (339)
.+.. |.+ ..+. ++|++..+.+++. .++.|.++|....+. + ....+.... ......-..+..+|+
T Consensus 379 ~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~-~-----~~~~kvv~~i~~~g~g~~~i~~~p~ 450 (567)
T 1qks_A 379 IEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH-P-----DNAWKILDSFPALGGGSLFIKTHPN 450 (567)
T ss_dssp EEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC-T-----TTBTSEEEEEECSCSCCCCEECCTT
T ss_pred EEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC-c-----cccCEEEEEEecCCCCCEEEEeCCC
Confidence 5443 222 2233 5787534555554 568999999987430 0 000112222 222223345778999
Q ss_pred CCceEEEec-------CCeEEEEeC
Q 040307 322 ELDWIAIAF-------VNKLQLLKV 339 (339)
Q Consensus 322 ~~~l~~~~~-------d~~v~~w~v 339 (339)
++++..... .+.|.++++
T Consensus 451 ~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 451 SQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp CSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred CCeEEEecCCCCCcccCceEEEEEC
Confidence 988776552 457888764
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=3e-14 Score=119.99 Aligned_cols=225 Identities=11% Similarity=0.050 Sum_probs=144.9
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC--
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-- 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-- 95 (339)
..+..++|||+ |+.||++.... .++...||.++..+++... + ..+.. +..++|+|++ +.|+.++
T Consensus 59 ~~~~~~~~SpD---g~~la~~~~~~-~~~~~~l~~~~~~~g~~~~---l-~~~~~-~~~~~wspdg-----~~l~~~~~~ 124 (347)
T 2gop_A 59 ENATMPRISPD---GKKIAFMRANE-EKKVSEIWVADLETLSSKK---I-LEAKN-IRSLEWNEDS-----RKLLIVGFK 124 (347)
T ss_dssp ESCEEEEECTT---SSEEEEEEEET-TTTEEEEEEEETTTTEEEE---E-EEESE-EEEEEECTTS-----SEEEEEEEC
T ss_pred ccCCCeEECCC---CCEEEEEEecc-CCCcceEEEEECCCCceEE---E-EcCCC-ccceeECCCC-----CEEEEEEcc
Confidence 45778999999 99999887311 0156556656665555443 1 22333 9999999999 6666543
Q ss_pred --------------------------C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC--
Q 040307 96 --------------------------D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-- 146 (339)
Q Consensus 96 --------------------------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-- 146 (339)
. .|.+|++.+++ ....+.. . .+..+.|+| ++ +++++..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~------~~~~~~~sp-dg-~~~~~~~~~~~ 193 (347)
T 2gop_A 125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P------RFSSGIWHR-DK-IVVNVPHREII 193 (347)
T ss_dssp CCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E------TTCEEEEET-TE-EEEEEECCCSS
T ss_pred CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C------CcccccCCC-Ce-EEEEEeccccc
Confidence 2 68889988876 3233322 1 356889998 88 777776542
Q ss_pred -----eEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCC--------CcEEEEECCCCcceeeEEeCCCCCCC
Q 040307 147 -----TCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGD--------CSVRVFDLRDKERSTIIYENPVQDCP 212 (339)
Q Consensus 147 -----~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~ 212 (339)
...||.+.+++ ...+..+ ..+..+ + +++.|+.++.+ ..|.+|| +++ ...+.. .+...
T Consensus 194 ~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~--~~~~~ 264 (347)
T 2gop_A 194 PQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILD--EVDRG 264 (347)
T ss_dssp CCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESST--TCCSE
T ss_pred ccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccc--cCCcc
Confidence 33444443554 3344444 445544 7 78888777754 3677787 333 222222 24556
Q ss_pred eEE-EEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcE-EEEEec
Q 040307 213 LLR-LEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRA-LIWEVV 286 (339)
Q Consensus 213 v~~-~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v-~iwd~~ 286 (339)
+.. +.|+ ++ ++++++.++. ++|| +.. ++. ..+..+...|.+++|+| . ++++++.++.. .||.+.
T Consensus 265 ~~~~~~~s--dg-~~~~~~~~~~-~~l~-~~~-g~~-~~~~~~~~~v~~~~~s~-~--~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 265 VGQAKIKD--GK-VYFTLFEEGS-VNLY-IWD-GEI-KPIAKGRHWIMGFDVDE-I--VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEET--TE-EEEEEEETTE-EEEE-EES-SSE-EEEECSSSEEEEEEESS-S--EEEEEECSSSCCEEEEES
T ss_pred cCCccEEc--Cc-EEEEEecCCc-EEEE-EcC-Cce-EEEecCCCeEEeeeeeC-c--EEEEEcCCCChHHheEeC
Confidence 776 8897 56 8888888887 9999 873 443 44555577899999999 3 77777777665 788776
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.66 E-value=1.2e-12 Score=107.67 Aligned_cols=273 Identities=10% Similarity=-0.054 Sum_probs=178.9
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
..+.++++.++ +.+.++.. .++.|.+|+.+ ..+.. .........+.++++.+++ .++++.. +
T Consensus 20 ~~p~~i~~d~~---g~l~v~~~----~~~~v~~~~~~---~~~~~--~~~~~~~~~~~~i~~~~~g-----~l~v~~~~~ 82 (300)
T 2qc5_A 20 SGPYGITSSED---GKVWFTQH----KANKISSLDQS---GRIKE--FEVPTPDAKVMCLIVSSLG-----DIWFTENGA 82 (300)
T ss_dssp CCEEEEEECTT---SCEEEEET----TTTEEEEECTT---SCEEE--EECSSTTCCEEEEEECTTS-----CEEEEETTT
T ss_pred CCcceeeECCC---CCEEEEcC----CCCeEEEECCC---CceEE--EECCCCCCcceeEEECCCC-----CEEEEecCC
Confidence 57889999999 88777665 57899995544 33332 1112234678999999998 7777765 3
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-eeeccCCceeEEEe
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET-QLVAHDREVYDISW 174 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~v~~~~~ 174 (339)
.|..++.. ++. ....+.... ..+.++++.+ +++++++...++.|..+|.. ++... .+......+..+++
T Consensus 83 ~~v~~~d~~-g~~-~~~~~~~~~-----~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 83 NKIGKLSKK-GGF-TEYPLPQPD-----SGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp TEEEEECTT-SCE-EEEECSSTT-----CCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred CeEEEECCC-CCe-EEecCCCCC-----CCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence 89999887 442 111222122 5688999997 88888877778899999987 55332 22223456889999
Q ss_pred c-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE-EEe
Q 040307 175 G-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLS 252 (339)
Q Consensus 175 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~ 252 (339)
. +++++++...++.|..+|. +++... ...+.....+..+++++ ++++.++....+. |.+||.. +.... .+.
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~-i~~~~~~--g~~~~~~~~ 226 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITN-TGKLEE--YPLPTNAAAPVGITSGN-DGALWFVEIMGNK-IGRITTT--GEISEYDIP 226 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEE--EECSSTTCCEEEEEECT-TSSEEEEETTTTE-EEEECTT--CCEEEEECS
T ss_pred CCCCCEEEEecCCCeEEEECC-CCcEEE--eeCCCCCCCcceEEECC-CCCEEEEccCCCE-EEEEcCC--CcEEEEECC
Confidence 8 6776666666788999998 444222 22222345788999997 7776665555555 9999983 33222 222
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVN 332 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~ 332 (339)
.+...+.++++++++ .+.++...++.|..|+.. .. ............+.+++..++|..+++. .+
T Consensus 227 ~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~-----------~~~~~~~~~~~~~~~i~~~~~g~l~v~~-~~- 291 (300)
T 2qc5_A 227 TPNARPHAITAGKNS-EIWFTEWGANQIGRITND-NT-----------IQEYQLQTENAEPHGITFGKDGSVWFAL-KC- 291 (300)
T ss_dssp STTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SC-----------EEEEECCSTTCCCCCEEECTTSCEEEEC-SS-
T ss_pred CCCCCceEEEECCCC-CEEEeccCCCeEEEECCC-Cc-----------EEEEECCccCCccceeEeCCCCCEEEEc-cC-
Confidence 345678899999998 566666667899999873 33 1111122234568899999999744444 34
Q ss_pred eEEEEe
Q 040307 333 KLQLLK 338 (339)
Q Consensus 333 ~v~~w~ 338 (339)
.|..++
T Consensus 292 ~i~~~~ 297 (300)
T 2qc5_A 292 KIGKLN 297 (300)
T ss_dssp EEEEEE
T ss_pred ceEEeC
Confidence 655543
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=5.7e-14 Score=130.28 Aligned_cols=277 Identities=11% Similarity=0.031 Sum_probs=168.3
Q ss_pred eecCCcccEEEEeeeccccCCeEEEEecCCC---CCcccce--e-eEeecCCCCceEEEEcCCCCCCCCCeEEEeC----
Q 040307 26 SVRHDRKSRLAVGSFLEDYSNKIELVNFNPE---TSDFSAD--N-RLIFDHPYTPTNIAFFPSEETLNPDIVATSG---- 95 (339)
Q Consensus 26 sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~---~~~~~~~--~-~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~---- 95 (339)
+|+ |++++......+ ...-.||..+.. ++..... . .+..+|...+..++||||+ +.||.+.
T Consensus 115 ~pd---G~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG-----~~la~~~~~~G 185 (741)
T 1yr2_A 115 QRR---GASVFYSWNSGL-MNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDG-----RLLAYSVQDGG 185 (741)
T ss_dssp EEE---TTEEEEEEECSS-CSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTS-----SEEEEEEEETT
T ss_pred EEE---CCEEEEEEEcCC-CeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCC-----CEEEEEEcCCC
Confidence 488 998888774111 113566666543 3332210 0 0112333468899999999 7777653
Q ss_pred -C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe--------------EEEEECCCCee
Q 040307 96 -D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT--------------CVIWDIDREIL 158 (339)
Q Consensus 96 -~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--------------v~i~d~~~~~~ 158 (339)
+ .|++||+.+++. +.. ..+. ..+..++|+| + +.|+.++.++. |++|++.++..
T Consensus 186 ~e~~~i~v~dl~tg~~--~~~-~~~~-----~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~ 255 (741)
T 1yr2_A 186 SDWRTVKFVGVADGKP--LAD-ELKW-----VKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS 255 (741)
T ss_dssp CSEEEEEEEETTTCCE--EEE-EEEE-----EESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGG
T ss_pred CceEEEEEEECCCCCC--CCc-cCCC-----ceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch
Confidence 2 699999999873 221 1111 2235789998 8 88888876654 89999977652
Q ss_pred --eeeee--ccCCceeEEEec-CCcEEEEEeCCC-----cEEEEECCCCcc--eeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307 159 --ETQLV--AHDREVYDISWG-GFNVFASVSGDC-----SVRVFDLRDKER--STIIYENPVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 159 --~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~-----~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l 226 (339)
...+. .+...+..+.|+ ++++|+..+.++ .|++||+.++.. ...+... ........ +| +++.|
T Consensus 256 ~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~-~~-dg~~l 330 (741)
T 1yr2_A 256 ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQWDFV-DG-VGDQL 330 (741)
T ss_dssp GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---SSSCEEEE-EE-ETTEE
T ss_pred hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---CCceEEEE-ec-cCCEE
Confidence 22222 233357899999 788888776543 899999987621 2333322 22334443 46 67777
Q ss_pred EEEeeCC---CeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307 227 ATVGMDS---NKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 227 ~~~~~d~---~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
+..+.++ ..|.+||+.... .....+..+...+..++|+ ++ .++++...|+..+||.+.... . .
T Consensus 331 ~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g----------~-~ 397 (741)
T 1yr2_A 331 WFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDG----------K-P 397 (741)
T ss_dssp EEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTS----------C-E
T ss_pred EEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC----------C-c
Confidence 7666532 248999987631 2233334444556678887 44 688889999998888776432 0 1
Q ss_pred ceee-ecccceeEEEEecCCCCceEEE-e---cCCeEEEEeC
Q 040307 303 PELC-YQSMAEINVVRWSPLELDWIAI-A---FVNKLQLLKV 339 (339)
Q Consensus 303 ~~~~-~~~~~~i~~~~~~p~~~~l~~~-~---~d~~v~~w~v 339 (339)
...+ ......+..++++|+++.++.. + ..++|.+|++
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 1222 2246678999999998766632 2 3467777764
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=2.5e-13 Score=113.46 Aligned_cols=241 Identities=10% Similarity=0.024 Sum_probs=158.5
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-CC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-GD 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-~~ 96 (339)
..+..+.+.. ++++++.. .++.|.+|| ..+.+... . ......+..+++++++ +++++. .+
T Consensus 44 ~~~~~i~~~~----~~lyv~~~----~~~~v~viD--~~t~~~~~--~--i~~~~~p~~i~~~~~g-----~lyv~~~~~ 104 (328)
T 3dsm_A 44 DVAQSMVIRD----GIGWIVVN----NSHVIFAID--INTFKEVG--R--ITGFTSPRYIHFLSDE-----KAYVTQIWD 104 (328)
T ss_dssp SCEEEEEEET----TEEEEEEG----GGTEEEEEE--TTTCCEEE--E--EECCSSEEEEEEEETT-----EEEEEEBSC
T ss_pred ccceEEEEEC----CEEEEEEc----CCCEEEEEE--CcccEEEE--E--cCCCCCCcEEEEeCCC-----eEEEEECCC
Confidence 3456677643 34444444 579999955 44444443 2 2345678999999998 788777 34
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CCCeEEEEECCCCeeeeeeeccCCceeEEEe
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VDTTCVIWDIDREILETQLVAHDREVYDISW 174 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 174 (339)
.|.+||..+.+ ....+......+.......+++. ++.++++.. .++.|.++|+.+++.+..+.. ......+.+
T Consensus 105 ~~v~~iD~~t~~--~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~ 179 (328)
T 3dsm_A 105 YRIFIINPKTYE--ITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVM 179 (328)
T ss_dssp SEEEEEETTTTE--EEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEE
T ss_pred CeEEEEECCCCe--EEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEE
Confidence 99999998886 44444432100001134566662 555555544 489999999999988777754 334577888
Q ss_pred c-CCcEEEEEeCC----------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 175 G-GFNVFASVSGD----------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 175 ~-~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
+ ++++++++..+ +.|.++|..+.+....+... .......++++| +++.|+++.. . |.+||...
T Consensus 180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~-d~~~lyv~~~--~-v~~~d~~t 253 (328)
T 3dsm_A 180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNG-TRDTLYWINN--D-IWRMPVEA 253 (328)
T ss_dssp CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECT-TSCEEEEESS--S-EEEEETTC
T ss_pred cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEec-CCCEEEEEcc--E-EEEEECCC
Confidence 8 57766666554 78999999887744333322 123678999998 7777777654 5 99999976
Q ss_pred CCCceEE-EecCCCCeeEEEeccCCCCeEEEE----eCCCcEEEEEecCCC
Q 040307 244 PTNPVVV-LSKHEGSVNGISWAPLYGRRLCSV----ADDSRALIWEVVGPG 289 (339)
Q Consensus 244 ~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~----~~dg~v~iwd~~~~~ 289 (339)
....... +.........++++|++..++++. ..++.|.+||.. ++
T Consensus 254 ~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 254 DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 3321111 121245788999999654577776 678899999988 55
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=7e-13 Score=107.71 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=158.0
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeE
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELK 111 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~ 111 (339)
+++|++++ .++.|.+|+ .++++... .+.......+.++.++|++ ++|++..+.|+.||. +++ .+
T Consensus 5 ~~~lv~~~----~~~~v~~~d--~~tG~~~w--~~~~~~~~~~~~~~~~pdG-----~ilvs~~~~V~~~d~-~G~--~~ 68 (276)
T 3no2_A 5 QHLLVGGS----GWNKIAIIN--KDTKEIVW--EYPLEKGWECNSVAATKAG-----EILFSYSKGAKMITR-DGR--EL 68 (276)
T ss_dssp CEEEEECT----TCSEEEEEE--TTTTEEEE--EEECCTTCCCCEEEECTTS-----CEEEECBSEEEEECT-TSC--EE
T ss_pred CcEEEeeC----CCCEEEEEE--CCCCeEEE--EeCCCccCCCcCeEECCCC-----CEEEeCCCCEEEECC-CCC--EE
Confidence 57888888 799999954 54555554 2322222468999999999 898855459999998 665 55
Q ss_pred EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeeec------cCCceeEEEec-CCcEEEEE
Q 040307 112 SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DTTCVIWDIDREILETQLVA------HDREVYDISWG-GFNVFASV 183 (339)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~-~~~~l~~~ 183 (339)
..+..+. ...+.++.+.| +++.+++.+. ++.|..+|. +++.+..+.. +......++.. +++++++.
T Consensus 69 W~~~~~~----~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 69 WNIAAPA----GCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp EEEECCT----TCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred EEEcCCC----CccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 5665432 04678889998 9999999887 788888886 6776665532 11234455666 79999999
Q ss_pred eCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC------CC
Q 040307 184 SGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE------GS 257 (339)
Q Consensus 184 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~------~~ 257 (339)
..++.|..||.. ++..-. +.. ...+.++...+ ++++++++..++. |..+|..+ ++.+.++..+. ..
T Consensus 143 ~~~~~v~~~d~~-G~~~w~-~~~---~~~~~~~~~~~-~g~~~v~~~~~~~-v~~~d~~t-G~~~w~~~~~~~~~~~l~~ 214 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNS-VKL---SGTPFSSAFLD-NGDCLVACGDAHC-FVQLNLES-NRIVRRVNANDIEGVQLFF 214 (276)
T ss_dssp TTTTEEEEECTT-SCEEEE-EEC---SSCCCEEEECT-TSCEEEECBTTSE-EEEECTTT-CCEEEEEEGGGSBSCCCSE
T ss_pred cCCCEEEEECCC-CCEEEE-EEC---CCCccceeEcC-CCCEEEEeCCCCe-EEEEeCcC-CcEEEEecCCCCCCccccc
Confidence 999999999988 653333 332 13455677776 8888888777776 99999886 66777776432 23
Q ss_pred eeEEEeccCCCCeEEEEeCC--------CcEEEEEecCCC
Q 040307 258 VNGISWAPLYGRRLCSVADD--------SRALIWEVVGPG 289 (339)
Q Consensus 258 v~~~~~~p~~~~~l~~~~~d--------g~v~iwd~~~~~ 289 (339)
+..++..++| .++++.... +..+++++....
T Consensus 215 ~~~~~~~~~G-~i~v~~~~g~~~~~~~~~~~~~~~~~~~g 253 (276)
T 3no2_A 215 VAQLFPLQNG-GLYICNWQGHDREAGKGKHPQLVEIDSEG 253 (276)
T ss_dssp EEEEEECTTS-CEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred cccceEcCCC-CEEEEeccCccccccccCCceEEEECCCC
Confidence 7788899998 477666311 245677775544
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=2.4e-12 Score=105.77 Aligned_cols=234 Identities=10% Similarity=-0.020 Sum_probs=159.0
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
+...+.++++.+++ .++++.. + .|.+|+.. ++... ..+.... ..+.++++.+ ++.++++...++.
T Consensus 13 ~~~~~~~i~~d~~g-----~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~-----~~~~~i~~~~-~g~l~v~~~~~~~ 79 (299)
T 2z2n_A 13 QDTGPYGITVSDKG-----KVWITQHKANMISCINLD-GKITE-YPLPTPD-----AKVMCLTISS-DGEVWFTENAANK 79 (299)
T ss_dssp SSCCEEEEEECTTS-----CEEEEETTTTEEEEECTT-CCEEE-EECSSTT-----CCEEEEEECT-TSCEEEEETTTTE
T ss_pred cCCCccceEECCCC-----CEEEEecCCCcEEEEcCC-CCeEE-ecCCccc-----CceeeEEECC-CCCEEEeCCCCCe
Confidence 34678999999999 7777765 4 89999988 54211 1112222 5788999997 8888887777889
Q ss_pred EEEEECCCCeeeeeee--ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCC
Q 040307 148 CVIWDIDREILETQLV--AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPR 224 (339)
Q Consensus 148 v~i~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 224 (339)
|..||.. ++ ...+. .....+..+++. ++.++++...++.|..||. +++.... ..+.....+..+++.| ++.
T Consensus 80 i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~--~~~~~~~~~~~i~~~~-~g~ 153 (299)
T 2z2n_A 80 IGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY--ELPNKGSYPSFITLGS-DNA 153 (299)
T ss_dssp EEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE--ECSSTTCCEEEEEECT-TSC
T ss_pred EEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe--cCCCCCCCCceEEEcC-CCC
Confidence 9999986 33 22222 244578899998 6777777777889999998 4442222 2222345789999997 777
Q ss_pred eEEEEeeCCCeEEEEecCCCCCceEE-EecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc
Q 040307 225 FMATVGMDSNKVVVLDIRFPTNPVVV-LSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP 303 (339)
Q Consensus 225 ~l~~~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 303 (339)
++++...++. |..||. . ++.... +......+.++++++++ .+.++...++.|.+||. ... ...
T Consensus 154 l~v~~~~~~~-i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~-----------~~~ 217 (299)
T 2z2n_A 154 LWFTENQNNA-IGRITE-S-GDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGE-----------ITE 217 (299)
T ss_dssp EEEEETTTTE-EEEECT-T-CCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC-----------EEE
T ss_pred EEEEeCCCCE-EEEEcC-C-CcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCc-----------EEE
Confidence 7666555566 999998 3 332221 23334568899999998 57766667789999998 443 111
Q ss_pred eeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 304 ELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 304 ~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.........+.+++++++|..+++...++.|..|+
T Consensus 218 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred EECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence 11223446789999999997555555778888876
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=1.9e-12 Score=107.30 Aligned_cols=236 Identities=9% Similarity=0.020 Sum_probs=151.7
Q ss_pred CCCceEEEEcCCCCCCCCCeEEE-------eC-C-cEEEEeecCCcceeEEEe--ecCCCccCCCCEEEEEEcCCC-CCE
Q 040307 71 PYTPTNIAFFPSEETLNPDIVAT-------SG-D-SLRLWEIHDDRTELKSLL--NSNKTSEFSSAITSFDWAGFD-TRR 138 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~-------~~-~-~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~~ 138 (339)
-..+.+++|++++ .++++ +. + .|.+|+..+++......- .++. ..+.++++++ + +++
T Consensus 17 ~~~~~~~~~~~~g-----~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~-----~~~~~i~~~~-~~g~l 85 (314)
T 1pjx_A 17 IPGAEGPVFDKNG-----DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG-----GIPAGCQCDR-DANQL 85 (314)
T ss_dssp CTTCEEEEECTTS-----CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE-----CCEEEEEECS-SSSEE
T ss_pred CCCccCceECCCC-----CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC-----CCCceEEEec-CCCcE
Confidence 3457899999998 78777 33 4 899999877763222110 0122 5688999997 6 655
Q ss_pred EEEEeCCCeEEEEECCCCeeeee-eec----cCCceeEEEec-CCcEEEEEeCC---------------CcEEEEECCCC
Q 040307 139 VATCSVDTTCVIWDIDREILETQ-LVA----HDREVYDISWG-GFNVFASVSGD---------------CSVRVFDLRDK 197 (339)
Q Consensus 139 l~~~~~d~~v~i~d~~~~~~~~~-~~~----~~~~v~~~~~~-~~~~l~~~~~d---------------~~i~i~d~~~~ 197 (339)
+++. ..+.|.+||.+ ++.... ... ....+.+++++ +++++++...+ +.|..||.. +
T Consensus 86 ~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 86 FVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred EEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 5544 44589999988 654332 211 12357899998 67777766554 467777765 3
Q ss_pred cceeeEEeCCCCCCCeEEEEEe----cCCCCeEEEEe-eCCCeEEEEecCCCCC-----ceEEEecCC-CCeeEEEeccC
Q 040307 198 ERSTIIYENPVQDCPLLRLEWN----KADPRFMATVG-MDSNKVVVLDIRFPTN-----PVVVLSKHE-GSVNGISWAPL 266 (339)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~-~d~~~i~i~d~~~~~~-----~~~~~~~~~-~~v~~~~~~p~ 266 (339)
+. ...... ......++|+ | +++.|+++. .++. |.+||....+. ....+..+. ..+..++++++
T Consensus 163 ~~-~~~~~~---~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~ 236 (314)
T 1pjx_A 163 QM-IQVDTA---FQFPNGIAVRHMNDG-RPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236 (314)
T ss_dssp CE-EEEEEE---ESSEEEEEEEECTTS-CEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred CE-EEeccC---CCCcceEEEecccCC-CCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCC
Confidence 32 222221 2356789999 8 776655554 4565 99999762122 122233333 56789999999
Q ss_pred CCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307 267 YGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI-AIAFVNKLQLLKV 339 (339)
Q Consensus 267 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~-~~~~d~~v~~w~v 339 (339)
| .++++...++.|.+||..+.. .......+...+.+++++|++..|+ +...++.|..|++
T Consensus 237 G-~l~v~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 237 N-NLLVANWGSSHIEVFGPDGGQ------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp C-CEEEEEETTTEEEEECTTCBS------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred C-CEEEEEcCCCEEEEEcCCCCc------------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 9 577777788899999987544 1122223446789999999998555 4456678888764
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.62 E-value=9.2e-13 Score=113.19 Aligned_cols=234 Identities=12% Similarity=0.024 Sum_probs=155.7
Q ss_pred CceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC--eE
Q 040307 73 TPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT--TC 148 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~v 148 (339)
.+..|+|++++ +++++... .|++|+.+++. ........ .... ++|+| +++.|+++..++ .|
T Consensus 132 ~P~~la~d~~g-----~lyv~d~~~~~I~~id~~~g~--~~~~~~~~------~~~~-ia~~~-~g~~l~~~d~~~~~~I 196 (409)
T 3hrp_A 132 YMWGIAAVGNN-----TVLAYQRDDPRVRLISVDDNK--VTTVHPGF------KGGK-PAVTK-DKQRVYSIGWEGTHTV 196 (409)
T ss_dssp CEEEEEECSTT-----EEEEEETTTTEEEEEETTTTE--EEEEEETC------CBCB-CEECT-TSSEEEEEBSSTTCEE
T ss_pred CceEEEEeCCC-----CEEEEecCCCcEEEEECCCCE--EEEeeccC------CCCc-eeEec-CCCcEEEEecCCCceE
Confidence 57899999999 78877763 99999998775 33333322 2233 89998 888888888766 79
Q ss_pred EEEECCCCeeeeee----eccCCceeEEEecC-CcEEEEEeCCCcEEEEECCCCcceeeEEe-CCCCCCC--eEEEEEec
Q 040307 149 VIWDIDREILETQL----VAHDREVYDISWGG-FNVFASVSGDCSVRVFDLRDKERSTIIYE-NPVQDCP--LLRLEWNK 220 (339)
Q Consensus 149 ~i~d~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~--v~~~~~~p 220 (339)
.+++...+.....+ ......+.++++++ +..|+.+..++.|+.||..+......... ....... ...++|+|
T Consensus 197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp EEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred EEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 99998665433333 21445678899994 56666677788999999987753221000 1111111 13999998
Q ss_pred CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC---------------CCeeEEEeccCCCCeEEEEe-CCCcEEEEE
Q 040307 221 ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE---------------GSVNGISWAPLYGRRLCSVA-DDSRALIWE 284 (339)
Q Consensus 221 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~---------------~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd 284 (339)
.++.++++-..++. |+.|+... . +..+.++. .....++++|++ .++++-. .+++|+.|+
T Consensus 277 ~~g~lyv~d~~~~~-I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 277 VDSNFYMSDQNLSS-VYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp TTTEEEEEETTTTE-EEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEE
T ss_pred CCCEEEEEeCCCCE-EEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEE
Confidence 44555555445555 99998764 2 34444432 347899999999 5777777 789999999
Q ss_pred ecCCCCCCCCCCCCCcccceeeecc---------------cceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 285 VVGPGYRSGNGGPSGDVEPELCYQS---------------MAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
+..+. .....++ -.....++++|++..+++-..++.|+.+.+
T Consensus 352 ~~~G~-------------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGY-------------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTTE-------------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCE-------------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 75544 1111111 245889999999876667778888887753
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=2.6e-12 Score=106.45 Aligned_cols=248 Identities=8% Similarity=0.038 Sum_probs=159.7
Q ss_pred CCeeEEEeeecCCcccEEEE-------eeeccccCCeEEEEecCCCCCcccceee-EeecCCCCceEEEEcCC-CCCCCC
Q 040307 18 WPISTVAWSVRHDRKSRLAV-------GSFLEDYSNKIELVNFNPETSDFSADNR-LIFDHPYTPTNIAFFPS-EETLNP 88 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~-------g~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~-~~~~~~ 88 (339)
..+.+++|+++ +.++++ +. .++.|.+|+. .++++..... -..++...+.+++++++ +
T Consensus 18 ~~~~~~~~~~~---g~l~~~~~~~~~~~~----~~~~i~~~d~--~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g----- 83 (314)
T 1pjx_A 18 PGAEGPVFDKN---GDFYIVAPEVEVNGK----PAGEILRIDL--KTGKKTVICKPEVNGYGGIPAGCQCDRDAN----- 83 (314)
T ss_dssp TTCEEEEECTT---SCEEEEETTCEETTE----ECCEEEEECT--TTCCEEEEECCEETTEECCEEEEEECSSSS-----
T ss_pred CCccCceECCC---CCEEEEEeccccCCC----CCCEEEEEeC--CCCcEEEEEecccCCCCCCCceEEEecCCC-----
Confidence 46789999988 887777 55 4788988553 3444332000 00114467899999999 7
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------------CeEEEE
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------------TTCVIW 151 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------------~~v~i~ 151 (339)
+++++..+ .|.+|+.+ ++ .... ..... ......+.+++++| +++++++...+ +.|..+
T Consensus 84 ~l~v~~~~~~l~~~d~~-g~--~~~~~~~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 84 QLFVADMRLGLLVVQTD-GT--FEEIAKKDSE-GRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp EEEEEETTTEEEEEETT-SC--EEECCSBCTT-SCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred cEEEEECCCCEEEEeCC-CC--EEEEEeccCC-CccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 77777665 89999987 54 2222 11111 01114578999998 88877776654 577778
Q ss_pred ECCCCeeeeeeeccCCceeEEEec----CC-cEE-EEEeCCCcEEEEECC-CCcce--eeEEeCCCCC-CCeEEEEEecC
Q 040307 152 DIDREILETQLVAHDREVYDISWG----GF-NVF-ASVSGDCSVRVFDLR-DKERS--TIIYENPVQD-CPLLRLEWNKA 221 (339)
Q Consensus 152 d~~~~~~~~~~~~~~~~v~~~~~~----~~-~~l-~~~~~d~~i~i~d~~-~~~~~--~~~~~~~~~~-~~v~~~~~~p~ 221 (339)
|.. ++... +..+......++++ +. +.+ ++...++.|.+||+. .++.. ......+.+. ..+..+++++
T Consensus 159 ~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~- 235 (314)
T 1pjx_A 159 TTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE- 235 (314)
T ss_dssp CTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-
T ss_pred CCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-
Confidence 765 54333 22333456788887 54 344 444567899999986 33211 1222222222 4578899997
Q ss_pred CCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 222 DPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+++++++...++. |.+||..+ ++.+..+..+...+.+++|+|++..++++...++.|..|++....
T Consensus 236 ~G~l~v~~~~~~~-i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 236 DNNLLVANWGSSH-IEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp TCCEEEEEETTTE-EEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred CCCEEEEEcCCCE-EEEEcCCC-CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 7887777666777 99999875 445566666667899999999984244555567889999987644
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.59 E-value=9.5e-14 Score=116.90 Aligned_cols=173 Identities=10% Similarity=0.056 Sum_probs=131.9
Q ss_pred CceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc---------ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE
Q 040307 73 TPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR---------TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC 142 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 142 (339)
.++.|++++.. .++++|+. .+.+|+++... ....... .+. . |+.++| ++++|+++
T Consensus 39 ~~nlLais~~~-----gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp-----~-V~~l~f---d~~~L~v~ 103 (388)
T 1xip_A 39 SLQNLDISNSK-----SLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIP-----D-VIFVCF---HGDQVLVS 103 (388)
T ss_dssp CCBCEEEETTT-----TEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECT-----T-EEEEEE---ETTEEEEE
T ss_pred cccEEEEcCCC-----CEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCC-----C-eeEEEE---CCCEEEEE
Confidence 68999999999 78888875 88889976433 2221222 233 5 999999 67888888
Q ss_pred eCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCC
Q 040307 143 SVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKAD 222 (339)
Q Consensus 143 ~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 222 (339)
.++.|++||+++.........|...+.++.+.+.+ ++++..||.|.+||+....... ....|.+++|+| +
T Consensus 104 -~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp-k 173 (388)
T 1xip_A 104 -TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN-S 173 (388)
T ss_dssp -ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-S
T ss_pred -cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-C
Confidence 88999999998776666666788889998888434 8888999999999999876432 124799999998 6
Q ss_pred CCeEEEEeeCCCeEEEEecCCCCCc--eEEE------e---cCCCCeeEEEeccCCCCeEEEEe
Q 040307 223 PRFMATVGMDSNKVVVLDIRFPTNP--VVVL------S---KHEGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 223 ~~~l~~~~~d~~~i~i~d~~~~~~~--~~~~------~---~~~~~v~~~~~~p~~~~~l~~~~ 275 (339)
| ++.|..|+. +++|+... ... ..++ . +|...|.+|.|.+++ .++++-.
T Consensus 174 G--~~vg~~dg~-i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~y~ 232 (388)
T 1xip_A 174 Q--LAVLLKDRS-FQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVFG 232 (388)
T ss_dssp E--EEEEETTSC-EEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEEE
T ss_pred c--eEEEEcCCc-EEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEEEc
Confidence 6 778899998 99998765 222 3344 2 367899999999998 5777643
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=1.1e-12 Score=121.68 Aligned_cols=248 Identities=16% Similarity=0.098 Sum_probs=156.8
Q ss_pred CeeEEEeeecCCcccEEEEeeecccc-CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDY-SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD- 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~- 96 (339)
.+..++|||| |++||++...++. ...|++|+++ +++... . ..+...+..++|+|| + .++.+..+
T Consensus 164 ~~~~~~~SPD---G~~la~~~~~~G~e~~~i~v~dl~--tg~~~~--~--~~~~~~~~~~~wspD-~----~l~~~~~~~ 229 (741)
T 1yr2_A 164 ALDAWAASDD---GRLLAYSVQDGGSDWRTVKFVGVA--DGKPLA--D--ELKWVKFSGLAWLGN-D----ALLYSRFAE 229 (741)
T ss_dssp EEEEEEECTT---SSEEEEEEEETTCSEEEEEEEETT--TCCEEE--E--EEEEEESCCCEESTT-S----EEEEEECCC
T ss_pred EEEeEEECCC---CCEEEEEEcCCCCceEEEEEEECC--CCCCCC--c--cCCCceeccEEEECC-C----EEEEEEecC
Confidence 6788999999 9999998731111 1457775554 444433 1 111122467899999 5 67666543
Q ss_pred --------------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCC-
Q 040307 97 --------------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-----TCVIWDIDRE- 156 (339)
Q Consensus 97 --------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~- 156 (339)
.|++|++.++.......+.... +...+..+.|+| ++++|+..+.++ .|++||+.++
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~---~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~ 305 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE---LPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGK 305 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEEEeccCC---CCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCC
Confidence 3889998776532222333221 013478999998 999888877544 8999999876
Q ss_pred -eeeeeeeccCCceeEEEecCCcEEEEEeCC----CcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307 157 -ILETQLVAHDREVYDISWGGFNVFASVSGD----CSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKADPRFMATVG 230 (339)
Q Consensus 157 -~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 230 (339)
+....+..+...+....+.+++.|+..+.+ +.|.+||+.+.. ....+... +...+..++|. ++.++++..
T Consensus 306 ~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~l~~~~~~--~~~lv~~~~ 381 (741)
T 1yr2_A 306 IGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE--SKDNLESVGIA--GNRLFASYI 381 (741)
T ss_dssp ECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC--CSSEEEEEEEE--BTEEEEEEE
T ss_pred CcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC--CCCeEEEEEEE--CCEEEEEEE
Confidence 314555555555555544467777766654 459999988752 23333322 34456677776 567778888
Q ss_pred eCCCeEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEe---CCCcEEEEEecCCC
Q 040307 231 MDSNKVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVA---DDSRALIWEVVGPG 289 (339)
Q Consensus 231 ~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~---~dg~v~iwd~~~~~ 289 (339)
.++. .+||.+...+.....+.. +...+..+.++|+++.++++.+ ..+.|++||+.+++
T Consensus 382 ~dg~-~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 382 HDAK-SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTE-EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ECCE-EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8876 666655432444555654 3567889999999854444443 34789999987654
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.57 E-value=9e-12 Score=102.51 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=147.3
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcE
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSL 98 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i 98 (339)
-.-...|+|+ .+.++++.. .++.|..|+.+ +..... ......+.++++++++ +++++..+.|
T Consensus 14 ~~Egp~w~~~--~~~l~~~d~----~~~~i~~~d~~--~~~~~~-----~~~~~~~~~i~~~~dG-----~l~v~~~~~l 75 (297)
T 3g4e_A 14 CGESPVWEEV--SNSLLFVDI----PAKKVCRWDSF--TKQVQR-----VTMDAPVSSVALRQSG-----GYVATIGTKF 75 (297)
T ss_dssp BEEEEEEETT--TTEEEEEET----TTTEEEEEETT--TCCEEE-----EECSSCEEEEEEBTTS-----SEEEEETTEE
T ss_pred cccCCeEECC--CCEEEEEEC----CCCEEEEEECC--CCcEEE-----EeCCCceEEEEECCCC-----CEEEEECCeE
Confidence 3457889996 144555555 57889886654 333332 3456789999999999 8777765599
Q ss_pred EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCCeeeeeeeccCCce
Q 040307 99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------TTCVIWDIDREILETQLVAHDREV 169 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~~~v 169 (339)
.+||.++++...+....... ....++.++++| +++++++.... ..-.+|.+........+.......
T Consensus 76 ~~~d~~~g~~~~~~~~~~~~---~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p 151 (297)
T 3g4e_A 76 CALNWKEQSAVVLATVDNDK---KNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS 151 (297)
T ss_dssp EEEETTTTEEEEEEECCTTC---SSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE
T ss_pred EEEECCCCcEEEEEecCCCC---CCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc
Confidence 99999887633332221111 114578999998 88876654321 223444443222222233344456
Q ss_pred eEEEec-CCcEE-EEEeCCCcEEEEECC--CCcce--eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 170 YDISWG-GFNVF-ASVSGDCSVRVFDLR--DKERS--TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 170 ~~~~~~-~~~~l-~~~~~d~~i~i~d~~--~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
+.++|+ +++.| ++.+.++.|.+||+. ++... ..+.........+..+++++ +|++.++....+. |..||..+
T Consensus 152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~-v~~~d~~t 229 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGR-VIRLDPVT 229 (297)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTE-EEEECTTT
T ss_pred cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCE-EEEEcCCC
Confidence 889999 66655 555667889999974 44321 12222212234678899997 7876666555566 99999876
Q ss_pred CCCceEEEecCCCCeeEEEec-cCCCCeEEEEeC
Q 040307 244 PTNPVVVLSKHEGSVNGISWA-PLYGRRLCSVAD 276 (339)
Q Consensus 244 ~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~ 276 (339)
++.+..+..+...+++++|. |++..++++...
T Consensus 230 -G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 230 -GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp -CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred -ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 56777787777789999998 887544444443
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=5.6e-11 Score=100.69 Aligned_cols=274 Identities=7% Similarity=-0.046 Sum_probs=162.9
Q ss_pred eeecCCcccEEEEeeeccccCC--eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-------
Q 040307 25 WSVRHDRKSRLAVGSFLEDYSN--KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG------- 95 (339)
Q Consensus 25 ~sp~~~~~~~la~g~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~------- 95 (339)
..|+ +.++.+... .+.+. .|.+||.. +.+... .+ ...... .++++|++ +.+..+.
T Consensus 28 ~~~~---~~~~yv~~~-~~~~~~~~v~v~D~~--t~~~~~--~i--~~g~~p-~i~~spDg-----~~lyv~n~~~~~~~ 91 (373)
T 2mad_H 28 PGAD---GRRSYINLP-AHHSAIIQQWVLDAG--SGSILG--HV--NGGFLP-NPVAAHSG-----SEFALASTSFSRIA 91 (373)
T ss_pred CCCC---CCEEEEeCC-cccCCccEEEEEECC--CCeEEE--Ee--cCCCCC-CeEECCCC-----CEEEEEeccccccc
Confidence 3456 666655541 00111 77785544 444433 23 222233 99999999 5555542
Q ss_pred -----CcEEEEeecCCcceeEEEeecC--CCccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeee-eecc
Q 040307 96 -----DSLRLWEIHDDRTELKSLLNSN--KTSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQ-LVAH 165 (339)
Q Consensus 96 -----~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~-~~~~ 165 (339)
+.|.+||..+.+ ....+... ...........+.|+| ++++|+++.. ++.|.++| .+++.+.. +..
T Consensus 92 rg~~~~~v~viD~~t~~--~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~- 166 (373)
T 2mad_H 92 KGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS- 166 (373)
T ss_pred cCCCCCeEEEEECCCCc--EEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-
Confidence 379999998776 44443321 0000001234789998 9999998874 57899999 99988777 542
Q ss_pred CCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEe--CCCCCCC-eEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 166 DREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYE--NPVQDCP-LLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 166 ~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~-v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
... +.+. ....+++.+.||.+.++|. +++....... ......+ .....+.+.++.++++ +..+. +.+.|
T Consensus 167 ~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~-v~vid 240 (373)
T 2mad_H 167 PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGK-ILQAD 240 (373)
T ss_pred Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCce-EEEEe
Confidence 222 3333 3456777888999999999 6654322110 0001122 2335666644444444 45666 99999
Q ss_pred cCCCCC-ceEEEec----------CCCCeeEEEeccCCCCeEEEEeC----------CCcEEEEEecCCCCCCCCCCCCC
Q 040307 241 IRFPTN-PVVVLSK----------HEGSVNGISWAPLYGRRLCSVAD----------DSRALIWEVVGPGYRSGNGGPSG 299 (339)
Q Consensus 241 ~~~~~~-~~~~~~~----------~~~~v~~~~~~p~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~ 299 (339)
+..... .+..+.. .......+.++|++. .++++.. .+.|.++|+.+.+
T Consensus 241 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---------- 309 (373)
T 2mad_H 241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---------- 309 (373)
T ss_pred ccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCE----------
Confidence 865321 1122211 112244578999985 5555432 3579999998877
Q ss_pred cccceeeecccceeEEEEecCCCC-ceEEEe-cCCeEEEEeC
Q 040307 300 DVEPELCYQSMAEINVVRWSPLEL-DWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~-~d~~v~~w~v 339 (339)
.............++|+|||+ .++++. .++.|.++++
T Consensus 310 ---vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 310 ---TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ---EEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 443334445689999999998 566666 5899999874
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=5.1e-12 Score=102.60 Aligned_cols=210 Identities=8% Similarity=-0.066 Sum_probs=148.9
Q ss_pred CeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 89 DIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 89 ~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
++|++++ + .|.+||.++++ .+..+..+.. ..+.++.+.| ++++++ +.++.|..||. +++.+..+..+.
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~--~~w~~~~~~~----~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKE--IVWEYPLEKG----WECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTE--EEEEEECCTT----CCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred cEEEeeCCCCEEEEEECCCCe--EEEEeCCCcc----CCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence 5777776 4 99999998887 5666665420 2577889998 899888 45788999999 888888887643
Q ss_pred -CceeEEEec-CCcEEEEEeC-CCcEEEEECCCCcceeeEEeCC---CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEe
Q 040307 167 -REVYDISWG-GFNVFASVSG-DCSVRVFDLRDKERSTIIYENP---VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLD 240 (339)
Q Consensus 167 -~~v~~~~~~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d 240 (339)
..+.++.+. +++++++.+. ++.+..+|. +++....+.... .+......+++.+ +++++++...++. |..||
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~-v~~~d 152 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSE-VREIA 152 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTE-EEEEC
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCE-EEEEC
Confidence 467888888 8999998887 777877776 444332222110 1112344567776 8999998888887 99999
Q ss_pred cCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-c------ccee
Q 040307 241 IRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-S------MAEI 313 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~i 313 (339)
.. ++.+.++... ....++...+++ .++++++.++.|..+|..+++ .+..+. . ...+
T Consensus 153 ~~--G~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~-------------~~w~~~~~~~~~~~l~~~ 215 (276)
T 3no2_A 153 PN--GQLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNR-------------IVRRVNANDIEGVQLFFV 215 (276)
T ss_dssp TT--SCEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCC-------------EEEEEEGGGSBSCCCSEE
T ss_pred CC--CCEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCc-------------EEEEecCCCCCCcccccc
Confidence 86 5667777654 456778889998 588888888889999988776 332221 1 1237
Q ss_pred EEEEecCCCCceEEE
Q 040307 314 NVVRWSPLELDWIAI 328 (339)
Q Consensus 314 ~~~~~~p~~~~l~~~ 328 (339)
..++..++|..+++.
T Consensus 216 ~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 216 AQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceEcCCCCEEEEe
Confidence 788888888755554
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=6.6e-13 Score=111.81 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=129.3
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC-------CcccceeeEeecCCCCceEEEEcCCCCCCCCCeE
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET-------SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIV 91 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l 91 (339)
++..+++++. ..++++|+ ...+.+|+.+.-. ..+.. .....+.. |+.|+| ++ .+|
T Consensus 39 ~~nlLais~~---~gll~a~~-----~~~l~v~~~~~l~~~~~~~~~~~~~--~~~~~lp~-V~~l~f--d~-----~~L 100 (388)
T 1xip_A 39 SLQNLDISNS---KSLFVAAS-----GSKAVVGELQLLRDHITSDSTPLTF--KWEKEIPD-VIFVCF--HG-----DQV 100 (388)
T ss_dssp CCBCEEEETT---TTEEEEEE-----TTEEEEEEHHHHHHHHHSSSCCCCC--SEEEECTT-EEEEEE--ET-----TEE
T ss_pred cccEEEEcCC---CCEEEEeC-----CCEEEEEEhhHhhhhhccccccccc--eEEeeCCC-eeEEEE--CC-----CEE
Confidence 6899999999 88999998 4577778754211 11221 12345777 999999 77 788
Q ss_pred EEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee
Q 040307 92 ATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY 170 (339)
Q Consensus 92 a~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~ 170 (339)
+++.+ .|++||+.+.. .......++ .++.++.+.+ . .+++++.||.|.+||+.++.... +...|+
T Consensus 101 ~v~~~~~l~v~dv~sl~--~~~~~~~~~-----~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs 166 (388)
T 1xip_A 101 LVSTRNALYSLDLEELS--EFRTVTSFE-----KPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVT 166 (388)
T ss_dssp EEEESSEEEEEESSSTT--CEEEEEECS-----SCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEE
T ss_pred EEEcCCcEEEEEchhhh--ccCccceee-----cceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCce
Confidence 88765 99999998875 444555555 6788888875 2 28889999999999998776543 445899
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcc--eeeEEeC------CCCCCCeEEEEEecCCCCeEEEE
Q 040307 171 DISWGGFNVFASVSGDCSVRVFDLRDKER--STIIYEN------PVQDCPLLRLEWNKADPRFMATV 229 (339)
Q Consensus 171 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~------~~~~~~v~~~~~~p~~~~~l~~~ 229 (339)
|++|++.. ++.|..||.+++|+...... ...+... ..+...|.++.|.+ ++.++++-
T Consensus 167 ~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 167 SFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp EEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred EEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 99999544 78899999999998887663 2222111 12567899999997 77777763
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=1.1e-11 Score=104.01 Aligned_cols=282 Identities=10% Similarity=-0.002 Sum_probs=173.0
Q ss_pred EEEeeecCCcccEEEEeeec-cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe------
Q 040307 22 TVAWSVRHDRKSRLAVGSFL-EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS------ 94 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~------ 94 (339)
.....|+ +..+.+.... ...++.|.+ ++..+.+... .+..+.. .. ++++|+++ .++++.
T Consensus 37 ~~~~~pd---~~~vyV~~~~~~~~~~~V~V--iD~~t~~v~~--~I~vG~~--P~-va~spDG~----~lyVan~~~~r~ 102 (386)
T 3sjl_D 37 LEAPAPD---ARRVYVNDPAHFAAVTQQFV--IDGEAGRVIG--MIDGGFL--PN-PVVADDGS----FIAHASTVFSRI 102 (386)
T ss_dssp CCCCCCC---TTEEEEEECGGGCSSEEEEE--EETTTTEEEE--EEEECSS--CE-EEECTTSS----CEEEEEEEEEET
T ss_pred eeccCCC---CCEEEEEcCcccCCCCEEEE--EECCCCeEEE--EEECCCC--Cc-EEECCCCC----EEEEEccccccc
Confidence 3455677 8888887730 001578888 5555555554 3322322 34 99999994 344443
Q ss_pred -----CCcEEEEeecCCcceeEEEeecCC--CccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeecc
Q 040307 95 -----GDSLRLWEIHDDRTELKSLLNSNK--TSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 95 -----~~~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~ 165 (339)
++.|.+||..+.+ ....+.... ..........+.++| ++++++.+.. ++.|.++|+.+++.+.++...
T Consensus 103 ~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 103 ARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp TEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred ccCCCCCEEEEEECCCCe--EEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence 1289999999987 555543210 000002345789998 9998888864 689999999999988888532
Q ss_pred CCceeEEEec-CCcEEEEEeCCCcEEEEECCC-CcceeeEEeC-CCCCCCe-EEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 166 DREVYDISWG-GFNVFASVSGDCSVRVFDLRD-KERSTIIYEN-PVQDCPL-LRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 166 ~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~-~~~~~~v-~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
+ . ...+. ....+++.+.||.+.+.++.. ++........ .....++ ....|.+.+|++++ .+.++. +++.|+
T Consensus 180 -g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~ 254 (386)
T 3sjl_D 180 -D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDL 254 (386)
T ss_dssp -S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEEC
T ss_pred -C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEEC
Confidence 2 1 22233 356777888999999999987 4431111001 0011222 22466544665554 455776 999998
Q ss_pred CCCCC-ceEEEe----------cCCCCeeEEEeccCCCCeEEEEeC----------CCcEEEEEecCCCCCCCCCCCCCc
Q 040307 242 RFPTN-PVVVLS----------KHEGSVNGISWAPLYGRRLCSVAD----------DSRALIWEVVGPGYRSGNGGPSGD 300 (339)
Q Consensus 242 ~~~~~-~~~~~~----------~~~~~v~~~~~~p~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~ 300 (339)
..... .+..+. ........++++|++. .++.... .+.|.++|+.+.+
T Consensus 255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-~lyV~~~~~~~~~hk~~~~~V~viD~~t~k----------- 322 (386)
T 3sjl_D 255 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGE----------- 322 (386)
T ss_dssp TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCC-----------
T ss_pred CCCcceeecceeccccccccccccCCCcceeeECCCCC-eEEEEeccccccccCCCCCEEEEEECCCCe-----------
Confidence 75321 111121 0122345678899985 5554432 2468899998887
Q ss_pred ccceeeecccceeEEEEecCCCC-ceEEEe-cCCeEEEEeC
Q 040307 301 VEPELCYQSMAEINVVRWSPLEL-DWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 301 ~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~-~d~~v~~w~v 339 (339)
.+....-...+.+++++|+++ .|+++. .++.|.+++.
T Consensus 323 --v~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 323 --RLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp --EEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred --EEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 444444445789999999996 566654 5899999874
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=5e-11 Score=97.87 Aligned_cols=234 Identities=9% Similarity=-0.053 Sum_probs=156.3
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeE
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTC 148 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v 148 (339)
...+.++.+.+++ .++++.. + .|.+|+.. ++... ..+.... ..+.++++.+ +++++++...++.|
T Consensus 19 ~~~p~~i~~d~~g-----~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~-----~~~~~i~~~~-~g~l~v~~~~~~~v 85 (300)
T 2qc5_A 19 DSGPYGITSSEDG-----KVWFTQHKANKISSLDQS-GRIKE-FEVPTPD-----AKVMCLIVSS-LGDIWFTENGANKI 85 (300)
T ss_dssp TCCEEEEEECTTS-----CEEEEETTTTEEEEECTT-SCEEE-EECSSTT-----CCEEEEEECT-TSCEEEEETTTTEE
T ss_pred CCCcceeeECCCC-----CEEEEcCCCCeEEEECCC-CceEE-EECCCCC-----CcceeEEECC-CCCEEEEecCCCeE
Confidence 4578899999999 7877765 3 89999987 54221 1222222 5788999997 88877777668899
Q ss_pred EEEECCCCeeee-eeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeE
Q 040307 149 VIWDIDREILET-QLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 149 ~i~d~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 226 (339)
..+|.. ++... .+......+.++++. +++++++...++.|..+|.. ++... ...+.....+..+++.| ++++.
T Consensus 86 ~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~--~~~~~~~~~~~~i~~d~-~g~l~ 160 (300)
T 2qc5_A 86 GKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE--YDLPNKGSYPAFITLGS-DNALW 160 (300)
T ss_dssp EEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECT-TSSEE
T ss_pred EEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE--ccCCCCCCCceeEEECC-CCCEE
Confidence 999987 54321 222234568899998 67777777668889999987 44222 22222345789999997 77755
Q ss_pred EEEeeCCCeEEEEecCCCCCceE-EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccccee
Q 040307 227 ATVGMDSNKVVVLDIRFPTNPVV-VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPEL 305 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 305 (339)
++...++. |..+|. . ++... ....+...+..+++++++ .+.++....+.|.+|+. ... .....
T Consensus 161 v~~~~~~~-i~~~~~-~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~-----------~~~~~ 224 (300)
T 2qc5_A 161 FTENQNNS-IGRITN-T-GKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGE-----------ISEYD 224 (300)
T ss_dssp EEETTTTE-EEEECT-T-CCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC-----------EEEEE
T ss_pred EEecCCCe-EEEECC-C-CcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCc-----------EEEEE
Confidence 55444555 999988 3 33222 122334568899999998 57666666778999987 333 01111
Q ss_pred eecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 306 CYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 306 ~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.......+.++++++++..+++...++.|..|+
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 223445688999999997555555678887775
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.51 E-value=4.5e-11 Score=98.31 Aligned_cols=223 Identities=10% Similarity=0.071 Sum_probs=142.3
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~ 149 (339)
.-..+..|+|++. .++.+.. + .|..|+..+++. ..+.. . ..+.+++++| +++++++ . ++.|.
T Consensus 13 ~~~Egp~w~~~~~----~l~~~d~~~~~i~~~d~~~~~~---~~~~~-~-----~~~~~i~~~~-dG~l~v~-~-~~~l~ 76 (297)
T 3g4e_A 13 RCGESPVWEEVSN----SLLFVDIPAKKVCRWDSFTKQV---QRVTM-D-----APVSSVALRQ-SGGYVAT-I-GTKFC 76 (297)
T ss_dssp SBEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCE---EEEEC-S-----SCEEEEEEBT-TSSEEEE-E-TTEEE
T ss_pred ccccCCeEECCCC----EEEEEECCCCEEEEEECCCCcE---EEEeC-C-----CceEEEEECC-CCCEEEE-E-CCeEE
Confidence 3456889999652 5666655 3 999999987752 22222 2 5789999998 8885554 3 57899
Q ss_pred EEECCCCeeeeeeec----cCCceeEEEec-CCcEEEEEeCC---------CcEEEEECCCCcceeeEEeCCCCCCCeEE
Q 040307 150 IWDIDREILETQLVA----HDREVYDISWG-GFNVFASVSGD---------CSVRVFDLRDKERSTIIYENPVQDCPLLR 215 (339)
Q Consensus 150 i~d~~~~~~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 215 (339)
+||.++++....... ....+.+++++ +++++++.... ..-.+|.+........+... ......
T Consensus 77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~png 153 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNG 153 (297)
T ss_dssp EEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEE
T ss_pred EEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cccccc
Confidence 999988764332221 12347889999 67766654321 23355555433222222221 235678
Q ss_pred EEEecCCCCeEEEEe-eCCCeEEEEecC-CCCCc-----eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC
Q 040307 216 LEWNKADPRFMATVG-MDSNKVVVLDIR-FPTNP-----VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP 288 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~-~d~~~i~i~d~~-~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~ 288 (339)
++|+| +++.|+.+. .++. |.+||+. ..+.. +..+..+......++++++| ++.++....+.|..||..++
T Consensus 154 i~~sp-dg~~lyv~~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 154 LDWSL-DHKIFYYIDSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEECT-TSCEEEEEEGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTC
T ss_pred eEEcC-CCCEEEEecCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCc
Confidence 99998 777665544 4555 9999974 22321 12222334567899999999 57777777888999998876
Q ss_pred CCCCCCCCCCCcccce-eeecccceeEEEEec-CCCCceEEEe
Q 040307 289 GYRSGNGGPSGDVEPE-LCYQSMAEINVVRWS-PLELDWIAIA 329 (339)
Q Consensus 289 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-p~~~~l~~~~ 329 (339)
+ .+ .+..+...+++++|. |++..|+.++
T Consensus 231 ~-------------~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 231 K-------------RLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp C-------------EEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred e-------------EEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 6 33 233344679999998 8887766443
No 210
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.50 E-value=1.2e-11 Score=104.03 Aligned_cols=275 Identities=7% Similarity=-0.044 Sum_probs=170.6
Q ss_pred ceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE---eecCCCCceEEEEcCCCCC
Q 040307 9 PGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL---IFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 9 ~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~ 85 (339)
+.+.++. ..+..++++|+ ++++++.... .++.++||.++ .+.....+.. ...+-..+..+++.+++
T Consensus 10 ~~v~~~~--~~p~~va~~~~---g~~~v~~~~~--~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-- 78 (343)
T 2qe8_A 10 EVVAELS--LAPGNITLTPD---GRLFLSLHQF--YQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNG-- 78 (343)
T ss_dssp EEEEEES--SCEEEEEECTT---SCEEEEECGG--GCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSS--
T ss_pred EEEEEcC--CCcceEEECCC---CCEEEEeCCC--CCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCC--
Confidence 3444444 68999999999 9988886421 12335666666 2332210000 11345678999999998
Q ss_pred CCCCeEEEeC-------CcEEEEeecCCcceeEEEeecCCC-ccCCCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECC
Q 040307 86 LNPDIVATSG-------DSLRLWEIHDDRTELKSLLNSNKT-SEFSSAITSFDWAGFDTRRVATCS---VDTTCVIWDID 154 (339)
Q Consensus 86 ~~~~~la~~~-------~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~---~d~~v~i~d~~ 154 (339)
+++++.. ..|.+||+.+++ ....+..... ......+..++++|.++..+++-. .++.|.+||+.
T Consensus 79 ---~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 79 ---IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp ---EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred ---cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 7777542 389999998876 3444432210 011134678999973444455544 67899999998
Q ss_pred CCeeeeeeeccCCcee-EEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 155 REILETQLVAHDREVY-DISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 155 ~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
+++..+.+..|..... ...+. ++..+.+.+.++.++.|. ..+..++|+| +++.|+++...
T Consensus 154 ~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~-dg~~ly~~~~~ 215 (343)
T 2qe8_A 154 TGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDA-ENEWLYLSPMH 215 (343)
T ss_dssp TCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------CCEEEEEECT-TSCEEEEEESS
T ss_pred CCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-----------------cccceeEecc-CCCEEEEEeCC
Confidence 8887666654422111 12333 566666667777765442 2357899998 88888888777
Q ss_pred CCeEEEEecCC--CCC--------ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCccc
Q 040307 233 SNKVVVLDIRF--PTN--------PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVE 302 (339)
Q Consensus 233 ~~~i~i~d~~~--~~~--------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 302 (339)
+..+..++... ... .+ ...++......++++++| .++++...++.|.+||...++ ..
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~-----------~~ 282 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKI-ERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRA-----------YK 282 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTC-EEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTE-----------EE
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcce-EecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCC-----------EE
Confidence 75466665421 010 01 122334466789999998 688888889999999984433 11
Q ss_pred ceeeecccceeEEEEecCCCCceEEEec
Q 040307 303 PELCYQSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 303 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
.+........+.++++.+++..+++.+.
T Consensus 283 ~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 283 LLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred EEEECCceecCCeeEECCCCcEEEEeCc
Confidence 1111122456899999999876666653
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=1.8e-10 Score=96.06 Aligned_cols=229 Identities=9% Similarity=-0.018 Sum_probs=144.2
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEE
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLR 99 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~ 99 (339)
.....|+|+ .+.++.+.. .++.|..|+.+ ++.... ......+.++.|++++ +++++..+.|.
T Consensus 51 ~egp~~~~~--~~~l~~~d~----~~~~i~~~d~~--~~~~~~-----~~~~~~v~~i~~~~dg-----~l~v~~~~gl~ 112 (326)
T 2ghs_A 51 GEGPTFDPA--SGTAWWFNI----LERELHELHLA--SGRKTV-----HALPFMGSALAKISDS-----KQLIASDDGLF 112 (326)
T ss_dssp EEEEEEETT--TTEEEEEEG----GGTEEEEEETT--TTEEEE-----EECSSCEEEEEEEETT-----EEEEEETTEEE
T ss_pred CcCCeEeCC--CCEEEEEEC----CCCEEEEEECC--CCcEEE-----EECCCcceEEEEeCCC-----eEEEEECCCEE
Confidence 457899997 134455555 57888885543 444332 2345679999999999 78877655899
Q ss_pred EEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC------CCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 100 LWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV------DTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 100 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
+||.++++...+...... .....+.++.++| +++++++... .+.|..++ +++.. .+.........++
T Consensus 113 ~~d~~~g~~~~~~~~~~~---~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESD---LPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSIC 185 (326)
T ss_dssp EEETTTCCEEEEECSSTT---CTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEE
T ss_pred EEECCCCcEEEEeeCCCC---CCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeE
Confidence 999887763322211110 0114688999998 8887665542 24566666 45433 3323334567899
Q ss_pred ec-CCcEEE-EEeCCCcEEEEECC--CC-cc--eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 174 WG-GFNVFA-SVSGDCSVRVFDLR--DK-ER--STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 174 ~~-~~~~l~-~~~~d~~i~i~d~~--~~-~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
|+ +++.++ +.+.++.|.+||+. ++ .. ...+.........+..+++++ ++++.++...++. |..||.. ++
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~-v~~~d~~--g~ 261 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGA-VDRYDTD--GN 261 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTE-EEEECTT--CC
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCE-EEEECCC--CC
Confidence 99 676554 44557899999986 44 21 112222211234567899987 7776665545566 9999983 55
Q ss_pred ceEEEecCCCCeeEEEec-cCCCCeEEEEeCC
Q 040307 247 PVVVLSKHEGSVNGISWA-PLYGRRLCSVADD 277 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~d 277 (339)
.+..+..+...+.+++|+ |++..++++...+
T Consensus 262 ~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 262 HIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 566777767789999998 8874344444444
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.48 E-value=3.9e-11 Score=100.65 Aligned_cols=276 Identities=10% Similarity=0.021 Sum_probs=168.1
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeecC------CCCc
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFDH------PYTP 74 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~------~~~v 74 (339)
+.+.+.+........ ++++|+ +++|.++.. .+..++.|.+| +..+.+... .+..+. ....
T Consensus 68 t~~v~~~I~vG~~P~-va~spD---G~~lyVan~~~~r~~~G~~~~~Vsvi--D~~t~~v~~--~I~v~~g~r~~~g~~P 139 (386)
T 3sjl_D 68 AGRVIGMIDGGFLPN-PVVADD---GSFIAHASTVFSRIARGERTDYVEVF--DPVTLLPTA--DIELPDAPRFLVGTYP 139 (386)
T ss_dssp TTEEEEEEEECSSCE-EEECTT---SSCEEEEEEEEEETTEEEEEEEEEEE--CTTTCCEEE--EEEETTCCCCCBSCCG
T ss_pred CCeEEEEEECCCCCc-EEECCC---CCEEEEEcccccccccCCCCCEEEEE--ECCCCeEEE--EEECCCccccccCCCC
Confidence 455666666554444 999999 998877652 01136789995 455555444 222221 2357
Q ss_pred eEEEEcCCCCCCCCCeEEEe-C-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 75 TNIAFFPSEETLNPDIVATS-G-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 75 ~~l~~~~~~~~~~~~~la~~-~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
..+.|+||++ .++++. . + .|.++|+.+.+ .+.++... .+ ...+ |...+.+++.+.||.+.+.
T Consensus 140 ~~~a~spDGk----~lyVan~~~~~~VsVID~~t~~--vv~tI~v~-------g~-~~~~-P~g~~~~~~~~~DG~~~~v 204 (386)
T 3sjl_D 140 WMTSLTPDGK----TLLFYQFSPAPAVGVVDLEGKA--FKRMLDVP-------DC-YHIF-PTAPDTFFMHCRDGSLAKV 204 (386)
T ss_dssp GGEEECTTSS----EEEEEECSSSCEEEEEETTTTE--EEEEEECC-------SE-EEEE-EEETTEEEEEETTSCEEEE
T ss_pred ceEEEcCCCC----EEEEEEcCCCCeEEEEECCCCc--EEEEEECC-------Cc-ceee-cCCCceeEEECCCCCEEEE
Confidence 7899999993 344443 2 3 89999999987 56666432 12 2223 4356677788889999999
Q ss_pred ECCC-Ceeeeeeecc----CCcee-EEEec-CCcEEEEEeCCCcEEEEECCCCcce--eeEE--e-----CCCCCCCeEE
Q 040307 152 DIDR-EILETQLVAH----DREVY-DISWG-GFNVFASVSGDCSVRVFDLRDKERS--TIIY--E-----NPVQDCPLLR 215 (339)
Q Consensus 152 d~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~--~-----~~~~~~~v~~ 215 (339)
++.+ ++.......+ ..++. ...|. +...++..+.+|.|++.|+.+.... ..+. . ..-.......
T Consensus 205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~ 284 (386)
T 3sjl_D 205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 284 (386)
T ss_dssp ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred ECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence 9876 5532211111 12221 24554 3334444667899999999766421 1111 0 0000122334
Q ss_pred EEEecCCCCeEEEEeeC---------CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEE-EeCCCcEEEEEe
Q 040307 216 LEWNKADPRFMATVGMD---------SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCS-VADDSRALIWEV 285 (339)
Q Consensus 216 ~~~~p~~~~~l~~~~~d---------~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~iwd~ 285 (339)
++++| +++.+++...+ +..|.++|+.+ .+.+.++.. ...+++++++|++..+|++ ...++.|.++|.
T Consensus 285 ~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 285 VAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp EEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred eeECC-CCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 67787 66666665431 12499999988 666666654 3478899999998435555 456899999999
Q ss_pred cCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 286 VGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
.+.+ .+......+..+.+.+++|
T Consensus 362 ~t~k-------------~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 362 ESGE-------------ELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TTCC-------------EEEEECCCCSSCCEEEECC
T ss_pred CCCc-------------EEEEecCCCCCceeEECCc
Confidence 9887 4544444555566677665
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=2.3e-11 Score=111.91 Aligned_cols=238 Identities=11% Similarity=0.071 Sum_probs=145.7
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEE-----eCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVAT-----SGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT 141 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~-----~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 141 (339)
++...+..++||||+ ++||- |++ .|++||+.+++.... .+.. .....++|+ |++.|+.
T Consensus 126 ~~~~~l~~~~~SpDg-----~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~-------~k~~~~~Ws--Dg~~l~y 190 (693)
T 3iuj_A 126 DGTTALDQLSFSRDG-----RILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD-------VKFSGISWL--GNEGFFY 190 (693)
T ss_dssp TSCCEEEEEEECTTS-----SEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE-------EESCCCEEE--TTTEEEE
T ss_pred CCcEEEEEEEECCCC-----CEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC-------ceeccEEEe--CCCEEEE
Confidence 345568889999999 77773 334 899999999873222 2222 112467898 7788888
Q ss_pred EeCCC-------------eEEEEECCCCee----eeeeec-cCCceeEEEec-CCcEEEEEeC----CCcEEEEECCCCc
Q 040307 142 CSVDT-------------TCVIWDIDREIL----ETQLVA-HDREVYDISWG-GFNVFASVSG----DCSVRVFDLRDKE 198 (339)
Q Consensus 142 ~~~d~-------------~v~i~d~~~~~~----~~~~~~-~~~~v~~~~~~-~~~~l~~~~~----d~~i~i~d~~~~~ 198 (339)
++.+. .|++|++.++.. +..... |......+.|+ ++++|+.... +..|+++|+.++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 77764 499999977642 222233 44457789999 7777654432 2589999998764
Q ss_pred ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCCCCC-ceEEEecCCCCeeEEEeccCCCCeEEEEe
Q 040307 199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRFPTN-PVVVLSKHEGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 275 (339)
........ +....... |++.++.+++....++ ..|..+|+..... ....+..|...+. .|++++..++++..
T Consensus 271 ~~~~~l~~--~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 271 APLLTVQG--DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp CCCEEEEC--SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred CceEEEeC--CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence 22222222 22333443 5553444555544432 2489999876332 1355666666665 89999854444444
Q ss_pred CCC--cEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC----CeEEEEe
Q 040307 276 DDS--RALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV----NKLQLLK 338 (339)
Q Consensus 276 ~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d----~~v~~w~ 338 (339)
.++ .|++|++.... .........+.+..+.++|++..++....+ +.+..|+
T Consensus 346 ~~g~~~l~~~d~~g~~------------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 346 VDATARVEQFDYEGKR------------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp ETTEEEEEEECTTSCE------------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred ECCeeEEEEEECCCCe------------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 555 57788776433 111223345568888889988776654333 5666665
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=4.7e-10 Score=95.01 Aligned_cols=253 Identities=9% Similarity=-0.071 Sum_probs=154.2
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEEEEeee------ccccCCeEEEEecCCCCCcccceeeEeec------CCCCc
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSF------LEDYSNKIELVNFNPETSDFSADNRLIFD------HPYTP 74 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~v 74 (339)
+.+.+.+....... .++++|| +++|+++.. .+..++.|.+||.. +.+... .+..+ +....
T Consensus 56 t~~~~~~i~~g~~p-~i~~spD---g~~lyv~n~~~~~~~rg~~~~~v~viD~~--t~~~~~--~i~~~~~~~~~~g~~p 127 (373)
T 2mad_H 56 SGSILGHVNGGFLP-NPVAAHS---GSEFALASTSFSRIAKGKRTDYVEVFDPV--TFLPIA--DIELPDAPRFDVGPYS 127 (373)
T ss_pred CCeEEEEecCCCCC-CeEECCC---CCEEEEEeccccccccCCCCCeEEEEECC--CCcEEE--EEECCCccccccCCCc
Confidence 34445555444444 9999999 998888752 01136789996654 333332 11111 12345
Q ss_pred eEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEE-eecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307 75 TNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSL-LNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149 (339)
Q Consensus 75 ~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~ 149 (339)
..+.|+|++ ++|..+. + .|.++| .+++ .... +... . ++.+.|.....+++.+.||.+.
T Consensus 128 ~~~~~spDG-----~~l~v~n~~~~~~v~viD-~t~~--~~~~~i~~~------~---~~~~~~~~~~~~~~~~~dg~~~ 190 (373)
T 2mad_H 128 WMNANTPNN-----ADLLFFQFAAGPAVGLVV-QGGS--SDDQLLSSP------T---CYHIHPGAPSTFYLLCAQGGLA 190 (373)
T ss_pred cceEECCCC-----CEEEEEecCCCCeEEEEE-CCCC--EEeEEcCCC------c---eEEEEeCCCceEEEEcCCCCEE
Confidence 689999999 6655543 2 799999 8876 5555 4331 1 2344443446677778899999
Q ss_pred EEECCCCeeeeeee-----ccCCce-eEEEec-CCcEEEEEeCCCcEEEEECCCCccee-eEEeC-C-------CCCCCe
Q 040307 150 IWDIDREILETQLV-----AHDREV-YDISWG-GFNVFASVSGDCSVRVFDLRDKERST-IIYEN-P-------VQDCPL 213 (339)
Q Consensus 150 i~d~~~~~~~~~~~-----~~~~~v-~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~-~-------~~~~~v 213 (339)
++|. +++...... ....++ ....+. ++..++..+..+.+.+.|+....... ..+.. . ......
T Consensus 191 ~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 269 (373)
T 2mad_H 191 KTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW 269 (373)
T ss_pred EEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence 9999 776553321 111121 223444 33444444467899999997653211 11100 0 011224
Q ss_pred EEEEEecCCCCeEEEEee----------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEE
Q 040307 214 LRLEWNKADPRFMATVGM----------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALI 282 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~~~----------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~i 282 (339)
..+.++| +++.+++... .+. |.++|..+ .+.+.++.. .....+++|+|++..+++++. .++.|.+
T Consensus 270 ~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~-V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~V 345 (373)
T 2mad_H 270 QQVAYLK-SSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLV-GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHI 345 (373)
T ss_pred EeEEECC-CCCEEEEEeccCCcccccCCCCe-EEEEECCC-CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEE
Confidence 4578888 6666666543 234 99999987 566677754 446899999999943677766 5899999
Q ss_pred EEecCCC
Q 040307 283 WEVVGPG 289 (339)
Q Consensus 283 wd~~~~~ 289 (339)
+|+.+.+
T Consensus 346 iD~~t~~ 352 (373)
T 2mad_H 346 YDAGAGD 352 (373)
T ss_pred EECCCCC
Confidence 9999887
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.44 E-value=4.1e-10 Score=93.85 Aligned_cols=218 Identities=7% Similarity=-0.009 Sum_probs=136.4
Q ss_pred ceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 74 PTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
..+..|+|++. .++.+.. + .|..|+.++++. ..+.. . ..+.++.|+| +++++++. . ..|.+|
T Consensus 51 ~egp~~~~~~~----~l~~~d~~~~~i~~~d~~~~~~---~~~~~-~-----~~v~~i~~~~-dg~l~v~~-~-~gl~~~ 114 (326)
T 2ghs_A 51 GEGPTFDPASG----TAWWFNILERELHELHLASGRK---TVHAL-P-----FMGSALAKIS-DSKQLIAS-D-DGLFLR 114 (326)
T ss_dssp EEEEEEETTTT----EEEEEEGGGTEEEEEETTTTEE---EEEEC-S-----SCEEEEEEEE-TTEEEEEE-T-TEEEEE
T ss_pred CcCCeEeCCCC----EEEEEECCCCEEEEEECCCCcE---EEEEC-C-----CcceEEEEeC-CCeEEEEE-C-CCEEEE
Confidence 46789999862 5666664 3 899999887652 22222 2 5789999997 78777654 3 459999
Q ss_pred ECCCCeeeeeeec----cCCceeEEEec-CCcEEEEEeC------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEec
Q 040307 152 DIDREILETQLVA----HDREVYDISWG-GFNVFASVSG------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNK 220 (339)
Q Consensus 152 d~~~~~~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p 220 (339)
|..+++....... ....+.++.++ +++++++... .+.|..+| +++ ...+... ......++|+|
T Consensus 115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~---~~~~~~i~~s~ 188 (326)
T 2ghs_A 115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFAD---ISIPNSICFSP 188 (326)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEE---ESSEEEEEECT
T ss_pred ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCC---CcccCCeEEcC
Confidence 9987764322211 12357889999 6776665432 24555555 333 2222221 23567899998
Q ss_pred CCCCeEEEEee-CCCeEEEEecC-CCC-Cc-----eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307 221 ADPRFMATVGM-DSNKVVVLDIR-FPT-NP-----VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS 292 (339)
Q Consensus 221 ~~~~~l~~~~~-d~~~i~i~d~~-~~~-~~-----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~ 292 (339)
+++.|+.+.. ++. |.+||+. ..+ .. +..+.........++++++| .+.++...++.|.+|+.. ++
T Consensus 189 -dg~~lyv~~~~~~~-I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~-g~--- 261 (326)
T 2ghs_A 189 -DGTTGYFVDTKVNR-LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-GN--- 261 (326)
T ss_dssp -TSCEEEEEETTTCE-EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-CC---
T ss_pred -CCCEEEEEECCCCE-EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC-CC---
Confidence 7776655544 455 9999985 112 11 11222234567889999998 576666667889999873 33
Q ss_pred CCCCCCCcccceeeecccceeEEEEec-CCCCceEEEe
Q 040307 293 GNGGPSGDVEPELCYQSMAEINVVRWS-PLELDWIAIA 329 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-p~~~~l~~~~ 329 (339)
.......+...+++++|+ |++..|+.++
T Consensus 262 ---------~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 262 ---------HIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ---------EEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred ---------EEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 112222344569999998 8877665444
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=7.4e-11 Score=100.73 Aligned_cols=272 Identities=10% Similarity=0.015 Sum_probs=166.7
Q ss_pred ccEEEEeeeccccC----CeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-----------CC
Q 040307 32 KSRLAVGSFLEDYS----NKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-----------GD 96 (339)
Q Consensus 32 ~~~la~g~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-----------~~ 96 (339)
+..+.+... .+ +.|.+ ++..+.+... .+..+. .. .+.++|+++ .++++. ++
T Consensus 84 ~~~vyV~n~---~~~~~~~~VsV--ID~~t~~vv~--~I~vG~--~P-gia~SpDgk----~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 84 ARRVYIQDP---AHFAAITQQFV--IDGSTGRILG--MTDGGF--LP-HPVAAEDGS----FFAQASTVFERIARGKRTD 149 (426)
T ss_dssp TTEEEEEEC---TTTCSSEEEEE--EETTTTEEEE--EEEECS--SC-EEEECTTSS----CEEEEEEEEEETTEEEEEE
T ss_pred CCEEEEECC---CcCCCCCeEEE--EECCCCEEEE--EEECCC--CC-ceEECCCCC----EEEEEeccccccccCCCCC
Confidence 566666552 22 78999 5555555554 333332 23 899999994 444443 12
Q ss_pred cEEEEeecCCcceeEEEeecC--CCccCCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccCCceeEE
Q 040307 97 SLRLWEIHDDRTELKSLLNSN--KTSEFSSAITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAHDREVYDI 172 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~v~~~ 172 (339)
.|.++|..+.+ ....+.-. ...........+.++| ++++++.+.. ++.|.+.|+.+.+.+..+..-. . ..+
T Consensus 150 ~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~-~~~ 224 (426)
T 3c75_H 150 YVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-C-YHI 224 (426)
T ss_dssp EEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEE
T ss_pred EEEEEECCCCc--EEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-c-eee
Confidence 89999999887 45444321 0000002234788998 9999988874 5789999999999888775321 1 111
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcceee---EEeCCCCCCC-eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-
Q 040307 173 SWGGFNVFASVSGDCSVRVFDLRDKERSTI---IYENPVQDCP-LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP- 247 (339)
Q Consensus 173 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~-v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~- 247 (339)
.-.....+++.+.||.+.+.++..++.... .+.. ...+ ...+.+.+ ++..++..+..+. +.+.|+......
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v--~~~p~~~~~~~~~-dg~~~~~~s~~g~-V~ViD~~~~~~~v 300 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT--EDELLINHPAFSL-RSGRLVWPTYTGK-IFQADLTAEGATF 300 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC--TTSCBCSCCEECT-TTCEEEEEBTTSE-EEEEEECSSCEEE
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc--CCCceeeEeeecC-CCCEEEEEeCCCc-EEEEeccCCceEE
Confidence 111346677788899999999855543211 1111 1112 12356787 6666666666776 999998642210
Q ss_pred eEEEec----------CCCCeeEEEeccCCCCeEEEEe---------CCCcEEEEEecCCCCCCCCCCCCCcccceeeec
Q 040307 248 VVVLSK----------HEGSVNGISWAPLYGRRLCSVA---------DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ 308 (339)
Q Consensus 248 ~~~~~~----------~~~~v~~~~~~p~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 308 (339)
+..+.. .......++++|++.+++++.. .++.|.++|+.+.+ .+....
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k-------------vv~~I~ 367 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE-------------RINKIE 367 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-------------EEEEEE
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe-------------EEEEEE
Confidence 011100 0112234789999854444432 13579999999988 444444
Q ss_pred ccceeEEEEecCCCC-ceEEEe-cCCeEEEEeC
Q 040307 309 SMAEINVVRWSPLEL-DWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 309 ~~~~i~~~~~~p~~~-~l~~~~-~d~~v~~w~v 339 (339)
-......++|+|+++ .++++. .++.|.++++
T Consensus 368 vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 368 LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp EEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 444689999999998 777777 5899999874
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=3.4e-10 Score=97.19 Aligned_cols=235 Identities=10% Similarity=-0.016 Sum_probs=150.2
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
..+..++|+|+ ++++++.. .++.|++|+. ++..... + ........ ++|++++ +.|..+. +
T Consensus 131 ~~P~~la~d~~---g~lyv~d~----~~~~I~~id~--~~g~~~~---~-~~~~~~~~-ia~~~~g-----~~l~~~d~~ 191 (409)
T 3hrp_A 131 KYMWGIAAVGN---NTVLAYQR----DDPRVRLISV--DDNKVTT---V-HPGFKGGK-PAVTKDK-----QRVYSIGWE 191 (409)
T ss_dssp CCEEEEEECST---TEEEEEET----TTTEEEEEET--TTTEEEE---E-EETCCBCB-CEECTTS-----SEEEEEBSS
T ss_pred CCceEEEEeCC---CCEEEEec----CCCcEEEEEC--CCCEEEE---e-eccCCCCc-eeEecCC-----CcEEEEecC
Confidence 36789999999 88777666 5789999554 4444432 1 12233344 9999999 6655554 2
Q ss_pred ---cEEEEeecCCcceeEEEe---ec-CCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee----eecc
Q 040307 97 ---SLRLWEIHDDRTELKSLL---NS-NKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ----LVAH 165 (339)
Q Consensus 97 ---~i~iw~~~~~~~~~~~~~---~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~----~~~~ 165 (339)
.|.+++..... ....+ .. .. ..+.+++++| ++..|+.+..++.|+.||..++..... ..+.
T Consensus 192 ~~~~I~~~d~~~~~--~~~~~g~~~~~~~-----~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 192 GTHTVYVYMKASGW--APTRIGQLGSTFS-----GKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp TTCEEEEEEGGGTT--CEEEEEECCTTSC-----SCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred CCceEEEEEcCCCc--eeEEeeeccchhc-----CCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCC
Confidence 67777776654 22222 11 11 4567899998 445555577789999999987653222 1122
Q ss_pred CCce-e-EEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCC------------CCCCCeEEEEEecCCCCeEEEE
Q 040307 166 DREV-Y-DISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENP------------VQDCPLLRLEWNKADPRFMATV 229 (339)
Q Consensus 166 ~~~v-~-~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~~l~~~ 229 (339)
...- . .++|++ +.++++-...+.|+.||.... ...+.... ..-.....++++| +++++++-
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad 340 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVD 340 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEE
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEe
Confidence 2222 2 899994 556666667788999987654 22222110 0013478999998 78866665
Q ss_pred e-eCCCeEEEEecCCCCCceEEEecC---------------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 230 G-MDSNKVVVLDIRFPTNPVVVLSKH---------------EGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 230 ~-~d~~~i~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
. .++. |+.||+.. + .+..+.++ -.....++++|++ .++++-..+++|+.++++
T Consensus 341 ~~~~~~-I~~~~~~~-G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 341 GFKGYC-LRKLDILD-G-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TTTTCE-EEEEETTT-T-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEEC
T ss_pred CCCCCE-EEEEECCC-C-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEeC
Confidence 5 5555 99999754 3 24555544 2357899999997 688888888889888763
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.41 E-value=3.5e-10 Score=93.32 Aligned_cols=225 Identities=11% Similarity=-0.006 Sum_probs=143.7
Q ss_pred cCCCCceEEEEcCCCCCCCCC-eEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC
Q 040307 69 DHPYTPTNIAFFPSEETLNPD-IVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~-~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
..........|+|++ + ++.++.. .|..|+. +++ ...+.... ..+..+++++ +++++++...+
T Consensus 42 ~~~~~~egp~~~~~g-----~~l~~~d~~~~~i~~~~~-~g~---~~~~~~~~-----~~~~gl~~d~-dG~l~v~~~~~ 106 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQ-----RTLVWSDLVGRRVLGWRE-DGT---VDVLLDAT-----AFTNGNAVDA-QQRLVHCEHGR 106 (305)
T ss_dssp CCCSSEEEEEEEGGG-----TEEEEEETTTTEEEEEET-TSC---EEEEEESC-----SCEEEEEECT-TSCEEEEETTT
T ss_pred cCCcCccCCeEeCCC-----CEEEEEECCCCEEEEEeC-CCC---EEEEeCCC-----CccceeeECC-CCCEEEEECCC
Confidence 444567789999999 6 6666653 8999987 343 23333333 5788999998 88877766666
Q ss_pred CeEEEEECCCCeeeeeeecc-----CCceeEEEec-CCcEEEE----EeC-------------CCcEEEEECCCCcceee
Q 040307 146 TTCVIWDIDREILETQLVAH-----DREVYDISWG-GFNVFAS----VSG-------------DCSVRVFDLRDKERSTI 202 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~~-----~~~v~~~~~~-~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~ 202 (339)
+.|.+|+.. ++. ..+..+ ...+.++++. +++++++ +.. .+.|..+|..+++....
T Consensus 107 ~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 107 RAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp TEEEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred CEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 899999985 542 222111 1346778998 7777775 321 24677777766653333
Q ss_pred EEeCCCCCCCeEEEEEecCCCCeEEEEeeC------CCeEEEEecCCCCCceEE---E-ecCCCCeeEEEeccCCCCeEE
Q 040307 203 IYENPVQDCPLLRLEWNKADPRFMATVGMD------SNKVVVLDIRFPTNPVVV---L-SKHEGSVNGISWAPLYGRRLC 272 (339)
Q Consensus 203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------~~~i~i~d~~~~~~~~~~---~-~~~~~~v~~~~~~p~~~~~l~ 272 (339)
. .. .....++|+| +++.|+++... +. |.+|++.... +.. + .........++++++| ++ .
T Consensus 185 ~-~~----~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~-i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G-~l-w 253 (305)
T 3dr2_A 185 A-DL----DHPNGLAFSP-DEQTLYVSQTPEQGHGSVE-ITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGG-WL-W 253 (305)
T ss_dssp E-EE----SSEEEEEECT-TSSEEEEEECCC---CCCE-EEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTS-CE-E
T ss_pred e-cC----CCCcceEEcC-CCCEEEEEecCCcCCCCCE-EEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCC-CE-E
Confidence 2 22 3567899998 88877776665 45 9999987532 211 1 1123445689999998 44 4
Q ss_pred EEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEE
Q 040307 273 SVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 273 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
+++.+ .|.+|+... + .+........+.+++|+|++..|+.++.++..++
T Consensus 254 v~~~~-gv~~~~~~g-~-------------~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 254 SSSGT-GVCVFDSDG-Q-------------LLGHIPTPGTASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp ECCSS-EEEEECTTS-C-------------EEEEEECSSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EecCC-cEEEECCCC-C-------------EEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 44444 488888743 2 2333333336899999999887777766544443
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.40 E-value=3.4e-10 Score=93.39 Aligned_cols=226 Identities=9% Similarity=-0.015 Sum_probs=144.3
Q ss_pred cCCeeEEEeeecCCccc-EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 17 QWPISTVAWSVRHDRKS-RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~-~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
........|+|+ ++ +++++. .++.|..|+. .+ ... .+ ..+...+..+++++++ +++++..
T Consensus 44 ~~~~egp~~~~~---g~~l~~~d~----~~~~i~~~~~--~g-~~~---~~-~~~~~~~~gl~~d~dG-----~l~v~~~ 104 (305)
T 3dr2_A 44 ATWSEGPAWWEA---QRTLVWSDL----VGRRVLGWRE--DG-TVD---VL-LDATAFTNGNAVDAQQ-----RLVHCEH 104 (305)
T ss_dssp CSSEEEEEEEGG---GTEEEEEET----TTTEEEEEET--TS-CEE---EE-EESCSCEEEEEECTTS-----CEEEEET
T ss_pred CcCccCCeEeCC---CCEEEEEEC----CCCEEEEEeC--CC-CEE---EE-eCCCCccceeeECCCC-----CEEEEEC
Confidence 345678899999 88 455555 6788888654 22 222 22 3455678999999999 8777765
Q ss_pred C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE----EeC-------------CCeEEEEECCCC
Q 040307 96 D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT----CSV-------------DTTCVIWDIDRE 156 (339)
Q Consensus 96 ~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~~-------------d~~v~i~d~~~~ 156 (339)
. .|.+|+.+ ++...+.... . ......+.++++.| +++++++ |.. .+.|..+|..++
T Consensus 105 ~~~~v~~~~~~-g~~~~~~~~~--~-~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 105 GRRAITRSDAD-GQAHLLVGRY--A-GKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp TTTEEEEECTT-SCEEEEECEE--T-TEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred CCCEEEEECCC-CCEEEEEecc--C-CCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 3 89999876 4422221111 1 00113567899998 8888876 332 356888887666
Q ss_pred eeeeeeeccCCceeEEEec-CCcEEEEEeCC------CcEEEEECCCCcce--eeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 157 ILETQLVAHDREVYDISWG-GFNVFASVSGD------CSVRVFDLRDKERS--TIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 157 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
+..... .......++|+ +++.|+.+... +.|.+||+...... ..+... .......+++++ +|++.+
T Consensus 180 ~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~-~G~lwv 254 (305)
T 3dr2_A 180 PLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDR-GGWLWS 254 (305)
T ss_dssp CCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECT-TSCEEE
T ss_pred cEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECC-CCCEEE
Confidence 543332 33456789999 67767766654 68999998765411 111111 223456788887 777444
Q ss_pred EEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDS 278 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 278 (339)
++ .+. |.+||.. ++.+..+..+. .+..++|+|++ +.|..++.++
T Consensus 255 -~~-~~g-v~~~~~~--g~~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~ 298 (305)
T 3dr2_A 255 -SS-GTG-VCVFDSD--GQLLGHIPTPG-TASNCTFDQAQ-QRLFITGGPC 298 (305)
T ss_dssp -CC-SSE-EEEECTT--SCEEEEEECSS-CCCEEEECTTS-CEEEEEETTE
T ss_pred -ec-CCc-EEEECCC--CCEEEEEECCC-ceeEEEEeCCC-CEEEEEcCCe
Confidence 34 345 9999974 55666666554 58899999988 4677766654
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=7.5e-10 Score=94.54 Aligned_cols=256 Identities=9% Similarity=0.001 Sum_probs=157.9
Q ss_pred CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeec------cccCCeEEEEecCCCCCcccceeeEeec------CCCC
Q 040307 6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFL------EDYSNKIELVNFNPETSDFSADNRLIFD------HPYT 73 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~ 73 (339)
.+.+.+.++...... .++++|+ +++|.++... ++.++.|.+ ++..+.+... .+..+ ....
T Consensus 107 ~t~~vv~~I~vG~~P-gia~SpD---gk~lyVan~~~~~~~~G~~~~~Vsv--iD~~t~~vv~--~I~v~g~~r~~~g~~ 178 (426)
T 3c75_H 107 STGRILGMTDGGFLP-HPVAAED---GSFFAQASTVFERIARGKRTDYVEV--FDPVTFLPIA--DIELPDAPRFLVGTY 178 (426)
T ss_dssp TTTEEEEEEEECSSC-EEEECTT---SSCEEEEEEEEEETTEEEEEEEEEE--ECTTTCCEEE--EEEETTCCCCCBSCC
T ss_pred CCCEEEEEEECCCCC-ceEECCC---CCEEEEEeccccccccCCCCCEEEE--EECCCCcEEE--EEECCCccccccCCC
Confidence 345666666665555 8999999 9888887620 113678999 5555555544 22222 1235
Q ss_pred ceEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEE
Q 040307 74 PTNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCV 149 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~ 149 (339)
...+.|+|++ +.+..+. + .|.+.|+.+.+ .+..+.... . ....|.....+++.+.||.+.
T Consensus 179 P~~~~~spDG-----k~lyV~n~~~~~~VsVID~~t~k--vv~~I~v~g-------~--~~~~p~g~~~~v~~~~dG~~~ 242 (426)
T 3c75_H 179 QWMNALTPDN-----KNLLFYQFSPAPAVGVVDLEGKT--FDRMLDVPD-------C--YHIFPASPTVFYMNCRDGSLA 242 (426)
T ss_dssp GGGSEECTTS-----SEEEEEECSSSCEEEEEETTTTE--EEEEEECCS-------E--EEEEEEETTEEEEEETTSSEE
T ss_pred cceEEEcCCC-----CEEEEEecCCCCeEEEEECCCCe--EEEEEEcCC-------c--eeeccCCCcEEEEEcCCCCEE
Confidence 6789999999 5555432 3 89999999987 555555421 1 222332335666777788888
Q ss_pred EEECCCCeeeee----eeccCCce-eEEEec-CCcEEEEEeCCCcEEEEECCCCcceee-EEeCC---C-----CCCCeE
Q 040307 150 IWDIDREILETQ----LVAHDREV-YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTI-IYENP---V-----QDCPLL 214 (339)
Q Consensus 150 i~d~~~~~~~~~----~~~~~~~v-~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~---~-----~~~~v~ 214 (339)
+.+..+++.... +.....++ ..+.|. ++..++.....+.+.+.|......... ..... . ......
T Consensus 243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 888855554321 21111121 124556 566666667788999999876542110 00000 0 001122
Q ss_pred EEEEecCCCCeEEEEee----------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEE
Q 040307 215 RLEWNKADPRFMATVGM----------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSRALIW 283 (339)
Q Consensus 215 ~~~~~p~~~~~l~~~~~----------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iw 283 (339)
.++++| +++.+++... .+. |.++|+.+ .+.+.++.. .....+++|+|++..++++.. .++.|.++
T Consensus 323 ~va~s~-dg~rlyVa~~~~~~gthk~~s~~-VsVID~~T-~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 323 QTAYHR-QSDRIYLLVDQRDEWKHKAASRF-VVVLNAET-GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp CEEEEG-GGTEEEEEEEECCTTCTTSCEEE-EEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred eeEEcC-CCCEEEEEecccccccccCCCCE-EEEEECCC-CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 368898 6666655543 234 99999988 666777764 235889999999942677776 68999999
Q ss_pred EecCCC
Q 040307 284 EVVGPG 289 (339)
Q Consensus 284 d~~~~~ 289 (339)
|+.+.+
T Consensus 399 D~~t~k 404 (426)
T 3c75_H 399 DAATGE 404 (426)
T ss_dssp ETTTCC
T ss_pred ECCCCC
Confidence 999988
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=4.8e-10 Score=103.15 Aligned_cols=243 Identities=11% Similarity=0.052 Sum_probs=145.6
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccc-cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLED-YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG- 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~- 95 (339)
..+..++|||| +++||.+....+ ....|+++++. +++.... .+ .......++|+ |+ +.|+.+.
T Consensus 129 ~~l~~~~~SpD---g~~lAy~~~~~G~~~~~i~v~dl~--tg~~~~~-~~---~~~k~~~~~Ws-Dg-----~~l~y~~~ 193 (693)
T 3iuj_A 129 TALDQLSFSRD---GRILAYSLSLAGSDWREIHLMDVE--SKQPLET-PL---KDVKFSGISWL-GN-----EGFFYSSY 193 (693)
T ss_dssp CEEEEEEECTT---SSEEEEEEECSSCCEEEEEEEETT--TCSEEEE-EE---EEEESCCCEEE-TT-----TEEEEEES
T ss_pred EEEEEEEECCC---CCEEEEEEecCCCceEEEEEEECC--CCCCCcc-cc---CCceeccEEEe-CC-----CEEEEEEe
Confidence 35788899999 999997653111 23567775554 4444321 11 11113577899 98 5555443
Q ss_pred C--------------cEEEEeecCCcceeEEEee--c-CCCccCCCCEEEEEEcCCCCCEEEEEeC----CCeEEEEECC
Q 040307 96 D--------------SLRLWEIHDDRTELKSLLN--S-NKTSEFSSAITSFDWAGFDTRRVATCSV----DTTCVIWDID 154 (339)
Q Consensus 96 ~--------------~i~iw~~~~~~~~~~~~~~--~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~v~i~d~~ 154 (339)
+ .|++|++.+........+. . +. ..+..+.|+| ++++|+.... ...|+++|+.
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~-----~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH-----HRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC-----CSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETT
T ss_pred cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC-----eEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECC
Confidence 2 3899998876532222222 2 22 4577899998 8887765432 3589999997
Q ss_pred CCe-eeeeeeccCCceeEEEecCCc-EEEEEeCC---CcEEEEECCCCcc--eeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 155 REI-LETQLVAHDREVYDISWGGFN-VFASVSGD---CSVRVFDLRDKER--STIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 155 ~~~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
++. ....+..+.........+++. +++....+ +.|..+|+.++.. ...+.. +...+. .|+| +++.|+
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~--~~s~-~g~~lv 341 (693)
T 3iuj_A 268 QENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQQVL--TVHS-GSGYLF 341 (693)
T ss_dssp STTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCE--EEEE-ETTEEE
T ss_pred CCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCCCEE--EEEE-ECCEEE
Confidence 764 345555566555554223444 44454443 5789999988654 122222 223333 7887 666666
Q ss_pred EEeeCCC--eEEEEecCCCCCceEEEec-CCCCeeEEEeccCCCCeEEEEeC---CCcEEEEEecCCC
Q 040307 228 TVGMDSN--KVVVLDIRFPTNPVVVLSK-HEGSVNGISWAPLYGRRLCSVAD---DSRALIWEVVGPG 289 (339)
Q Consensus 228 ~~~~d~~--~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~---dg~v~iwd~~~~~ 289 (339)
....++. .|++||+.. .....+.. ..+.+..+.++|+++.++++.+. -+.+..||+...+
T Consensus 342 ~~~~~~g~~~l~~~d~~g--~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 342 AEYMVDATARVEQFDYEG--KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEETTEEEEEEECTTS--CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEECCeeEEEEEECCC--CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6555442 388888763 33444432 34567788888988645555443 2788888876654
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.32 E-value=1.3e-08 Score=86.25 Aligned_cols=227 Identities=10% Similarity=0.011 Sum_probs=137.5
Q ss_pred CCCCCCCCCeEEEeC-C--cEEEEeecCC--cceeEEEeecCC---CccCCCCEEEEEEcCCCCCEEEEEeCC------C
Q 040307 81 PSEETLNPDIVATSG-D--SLRLWEIHDD--RTELKSLLNSNK---TSEFSSAITSFDWAGFDTRRVATCSVD------T 146 (339)
Q Consensus 81 ~~~~~~~~~~la~~~-~--~i~iw~~~~~--~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~d------~ 146 (339)
+++ ++|...+ . .|.++|+.+. +.+...+++..+ ..+. ..-..+...| ++ +++++..+ |
T Consensus 93 ~~r-----~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 93 IER-----RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCGP-DA-IYISALGNEEGEGPG 164 (462)
T ss_dssp CCS-----CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEECS-SC-EEEEEEEETTSCSCC
T ss_pred ccC-----CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeECC-Ce-EEEEcCCCcCCCCCC
Confidence 666 5555544 3 9999999754 334555553100 0000 1334566777 77 66666555 7
Q ss_pred eEEEEECCCCeeeeeeeccCC---ceeEEEec-CCcEEEEEe-------------------CCCcEEEEECCCCcceeeE
Q 040307 147 TCVIWDIDREILETQLVAHDR---EVYDISWG-GFNVFASVS-------------------GDCSVRVFDLRDKERSTII 203 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~~~~---~v~~~~~~-~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~ 203 (339)
.|.++|.++.+.+..+..... --..+.|+ +++.+++.. ...+|.+||+.+.+....+
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 899999999998888752222 23457778 677777774 3689999999987544443
Q ss_pred EeCCCCCCCeEEEEE--ecCCCCeEEEEee-----CCCeEEEEecCCCCCc--eEE--Eec----------------CCC
Q 040307 204 YENPVQDCPLLRLEW--NKADPRFMATVGM-----DSNKVVVLDIRFPTNP--VVV--LSK----------------HEG 256 (339)
Q Consensus 204 ~~~~~~~~~v~~~~~--~p~~~~~l~~~~~-----d~~~i~i~d~~~~~~~--~~~--~~~----------------~~~ 256 (339)
.... .......+.| +| +++++++++. ....|.+|.... +.. ... +.. -..
T Consensus 245 ~vg~-~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 245 TLGE-ENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp ESCT-TEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred ecCC-CCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCC
Confidence 3321 1123445555 88 8888888776 544477765543 210 011 000 023
Q ss_pred CeeEEEeccCCCCeEEEEe-CCCcEEEEEecCCCCCCCCCCCCCcccceeeeccc---------------ceeEEEEecC
Q 040307 257 SVNGISWAPLYGRRLCSVA-DDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSM---------------AEINVVRWSP 320 (339)
Q Consensus 257 ~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~i~~~~~~p 320 (339)
....|.+|||+. +|.++. ..+.|.+||+.... ........... +....++++|
T Consensus 322 ~pa~I~lS~DGr-fLYVSnrg~d~VavfdV~d~~----------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 322 LVTDIDISLDDK-FLYLSLWGIGEVRQYDISNPF----------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp CCCCEEECTTSC-EEEEEETTTTEEEEEECSSTT----------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred ceeEEEECCCCC-EEEEEeCCCCEEEEEEecCCC----------CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence 578899999995 555544 67899999997443 01111111111 1357899999
Q ss_pred CCCceEEEe
Q 040307 321 LELDWIAIA 329 (339)
Q Consensus 321 ~~~~l~~~~ 329 (339)
+|++|+++.
T Consensus 391 DGk~LyVaN 399 (462)
T 2ece_A 391 DGRRVYVTN 399 (462)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEEc
Confidence 999888776
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=1.2e-09 Score=91.71 Aligned_cols=249 Identities=11% Similarity=-0.004 Sum_probs=149.8
Q ss_pred CCCceeeeeeccCCeeEEEeeecCCcccEEEEeeec------cccCCeEEEEecCCCCCcccceeeEeecC------CCC
Q 040307 6 EKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFL------EDYSNKIELVNFNPETSDFSADNRLIFDH------PYT 73 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~~~------~~~ 73 (339)
.+.+.+.++...... .+.++|+ ++++.++... +..++.|.+ ++..+.+... .+..+. ...
T Consensus 54 ~t~~v~~~i~vG~~P-~i~~spD---g~~lyVan~~~~r~~~G~~~~~Vsv--iD~~T~~vv~--~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS-LAVAGHS---GSDFALASTSFARSAKGKRTDYVEV--FDPVTFLPIA--DIELPDAPRFSVGPR 125 (368)
T ss_dssp TTTEEEEEEEECTTC-EEEECTT---SSCEEEEEEEETTTTSSSEEEEEEE--ECTTTCCEEE--EEEETTSCSCCBSCC
T ss_pred CCCeEEEEEeCCCCC-ceEECCC---CCEEEEEcccccccccCCCCCEEEE--EECCCCCEEE--EEECCCccccccCCC
Confidence 456677777765555 8999999 9888887620 113688999 5555555554 332220 135
Q ss_pred ceEEEEcCCCCCCCCCeEEEe--C-C-cEEE--EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 74 PTNIAFFPSEETLNPDIVATS--G-D-SLRL--WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~--~-~-~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
...++++||+ +++..+ + + .+.+ +|..+ ...+... .. ....|.....+++.+.|+.
T Consensus 126 P~~ia~SpDG-----k~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~------~~---~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 126 VHIIGNCASS-----ACLLFFLFGSSAAAGLSVPGASD-----DQLTKSA------SC---FHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp TTSEEECTTS-----SCEEEEECSSSCEEEEEETTTEE-----EEEEECS------SC---CCCEEEETTEEECCCCTTS
T ss_pred cceEEEcCCC-----CEEEEEccCCCCeEEEEEEchhh-----ceEEECC------Cc---eEEccCCCeEEEEEcCCCC
Confidence 7899999999 555544 2 2 6777 88766 2223221 11 1122323445566677888
Q ss_pred EEEEECCC-----Ceeee----eeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCccee-eEEeCCC--------C
Q 040307 148 CVIWDIDR-----EILET----QLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERST-IIYENPV--------Q 209 (339)
Q Consensus 148 v~i~d~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~--------~ 209 (339)
+.+.|+.+ ++... .+.....+. ...++..++..+. +.+.+.|+....... ....... .
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~ 262 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR 262 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence 88888876 43221 111112233 3444555555556 899999987543111 1010000 0
Q ss_pred CCCeEEEEEecCCCCeEEEEee-C--------CCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEe-CCCc
Q 040307 210 DCPLLRLEWNKADPRFMATVGM-D--------SNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVA-DDSR 279 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~~~~-d--------~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~ 279 (339)
......++++| +++.++++.. . +. +.++|+.+ .+.+.++.... ....++|+|++.+++++.. .++.
T Consensus 263 p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~-~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 263 SAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAEN-TSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp ECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEE-EEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTE
T ss_pred cCcceeeEEcC-CCCEEEEEeccccCcccccCCC-EEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCe
Confidence 01112268998 6676666543 2 34 77999988 55566665433 6889999999955677777 6999
Q ss_pred EEEEEecCCC
Q 040307 280 ALIWEVVGPG 289 (339)
Q Consensus 280 v~iwd~~~~~ 289 (339)
|.++|+.+.+
T Consensus 339 VsVID~~t~k 348 (368)
T 1mda_H 339 LDIYDAASDQ 348 (368)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCc
Confidence 9999999987
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.21 E-value=3.5e-08 Score=83.64 Aligned_cols=231 Identities=11% Similarity=0.064 Sum_probs=141.1
Q ss_pred ecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe---e--cC-CCCceEEEEcCCCCCCCCCeEEEeC-----
Q 040307 27 VRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI---F--DH-PYTPTNIAFFPSEETLNPDIVATSG----- 95 (339)
Q Consensus 27 p~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~---~--~~-~~~v~~l~~~~~~~~~~~~~la~~~----- 95 (339)
++ +++|.+.+. .++.|.++|...+.........++ . .. ......+..+|++ -++.+.+
T Consensus 93 ~~---r~~l~v~~l---~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-----i~Vs~~g~~~g~ 161 (462)
T 2ece_A 93 IE---RRFLIVPGL---RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-----IYISALGNEEGE 161 (462)
T ss_dssp CC---SCEEEEEBT---TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-----EEEEEEEETTSC
T ss_pred cc---CCEEEEccC---CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-----EEEEcCCCcCCC
Confidence 66 777777663 789999977754433333322331 0 11 1245677888987 4443322
Q ss_pred --CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-------------------CCCeEEEEECC
Q 040307 96 --DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-------------------VDTTCVIWDID 154 (339)
Q Consensus 96 --~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------------------~d~~v~i~d~~ 154 (339)
+.|.+.|.++.+ .+.++...... ..--..+.|+| +++.++++. ...+|.+||+.
T Consensus 162 ~~g~v~vlD~~T~~--v~~~~~~~~~~--~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 162 GPGGILMLDHYSFE--PLGKWEIDRGD--QYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp SCCEEEEECTTTCC--EEEECCSBCTT--CCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred CCCeEEEEECCCCe--EEEEEccCCCC--ccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 179999998887 56665532100 01233578898 888888874 37899999999
Q ss_pred CCeeeeeeecc--CCceeEEEe--c-CCcEEEEEe------CCCcEEEEECCCCccee--eEEeCCC-------------
Q 040307 155 REILETQLVAH--DREVYDISW--G-GFNVFASVS------GDCSVRVFDLRDKERST--IIYENPV------------- 208 (339)
Q Consensus 155 ~~~~~~~~~~~--~~~v~~~~~--~-~~~~l~~~~------~d~~i~i~d~~~~~~~~--~~~~~~~------------- 208 (339)
+++.+.++..- ......+.| + +++++.+++ .+++|.+|....+.... .+.....
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 98877777542 123456666 6 566665555 56788776655432111 1000000
Q ss_pred --CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC--ceEEEecCC--------------CCeeEEEeccCCCCe
Q 040307 209 --QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN--PVVVLSKHE--------------GSVNGISWAPLYGRR 270 (339)
Q Consensus 209 --~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~--------------~~v~~~~~~p~~~~~ 270 (339)
.......+.++| ++++|+++......|.+||+..... .+..+.... +.-..++++|+| ++
T Consensus 317 ~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k~ 394 (462)
T 2ece_A 317 KAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-RR 394 (462)
T ss_dssp TEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-SE
T ss_pred ccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-CE
Confidence 013567899998 8999988887666799999864332 233333210 135889999999 57
Q ss_pred EEEEe
Q 040307 271 LCSVA 275 (339)
Q Consensus 271 l~~~~ 275 (339)
|+++.
T Consensus 395 LyVaN 399 (462)
T 2ece_A 395 VYVTN 399 (462)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77766
No 225
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.18 E-value=2.7e-07 Score=74.32 Aligned_cols=253 Identities=9% Similarity=-0.023 Sum_probs=144.0
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcc-cceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcce
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDF-SADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTE 109 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~ 109 (339)
.+|..+. .+.|+.++++...... .....+ ......+..++|++++. .++++.. . .|..++.+...
T Consensus 2 ~~l~~~~-----~~~I~~~~~~g~~~~~~~~~~~~-~~~~~~~~gi~~d~~~~----~ly~~d~~~~~I~~~~~~g~~-- 69 (267)
T 1npe_A 2 THLLFAQ-----TGKIERLPLERNTMKKTEAKAFL-HIPAKVIIGLAFDCVDK----VVYWTDISEPSIGRASLHGGE-- 69 (267)
T ss_dssp EEEEEEE-----EEEEEEEEESSSCBCGGGCEEEE-EEEEEEEEEEEEETTTT----EEEEEETTTTEEEEEESSSCC--
T ss_pred cEEEEEc-----CCeEEEEEecCcccccccceeee-cCCCCcEEEEEEecCCC----EEEEEECCCCEEEEEecCCCC--
Confidence 4566666 4578876665433211 110111 11124578999999762 5555554 3 89999987664
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEeC---
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVSG--- 185 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~--- 185 (339)
....+.... .....++++|..+.++++-...+.|.++++..................+++++ +..|..+..
T Consensus 70 ~~~~~~~~~-----~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 70 PTTIIRQDL-----GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp CEEEECTTC-----CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred cEEEEECCC-----CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 222222211 45789999973344555555678999999864332222222224568899983 555544443
Q ss_pred CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEecc
Q 040307 186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAP 265 (339)
Q Consensus 186 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p 265 (339)
.+.|..+++..... ..+... .-.....++++| ++..|+.+......|.++|... ......+.. ......++..
T Consensus 145 ~~~I~~~~~dg~~~-~~~~~~--~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P~gi~~d- 217 (267)
T 1npe_A 145 NPKIETSHMDGTNR-RILAQD--NLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAVTSY- 217 (267)
T ss_dssp SCEEEEEETTSCCC-EEEECT--TCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEEEEE-
T ss_pred CcEEEEEecCCCCc-EEEEEC--CCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCC-CceEEEecC-CCCceEEEEe-
Confidence 36788888765432 222222 224678999998 6666655555444499999864 222222222 2334566654
Q ss_pred CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec--ccceeEEEEecCCCC
Q 040307 266 LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ--SMAEINVVRWSPLEL 323 (339)
Q Consensus 266 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~p~~~ 323 (339)
++.++++....+.|..+|..+++ ...... .......+++.|++.
T Consensus 218 -~~~lyva~~~~~~v~~~d~~~g~-------------~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 218 -GKNLYYTDWKTNSVIAMDLAISK-------------EMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp -TTEEEEEETTTTEEEEEETTTTE-------------EEEEECCSSCCCCCCEEEECSCC
T ss_pred -CCEEEEEECCCCeEEEEeCCCCC-------------ceEEEccccccccceeeecCccC
Confidence 43455555567889999987765 222221 122467777777753
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.18 E-value=5.5e-09 Score=87.73 Aligned_cols=253 Identities=7% Similarity=-0.087 Sum_probs=147.7
Q ss_pred eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEe-----------CCcEEEEeecCCcceeEEEee
Q 040307 47 KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATS-----------GDSLRLWEIHDDRTELKSLLN 115 (339)
Q Consensus 47 ~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~-----------~~~i~iw~~~~~~~~~~~~~~ 115 (339)
.|.+ ++..+.+... .+..+.. + .+.++|+++ .++++. ++.|.+||+.+.+ ...++.
T Consensus 47 ~vsv--ID~~t~~v~~--~i~vG~~-P--~i~~spDg~----~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~ 113 (368)
T 1mda_H 47 ENWV--SCAGCGVTLG--HSLGAFL-S--LAVAGHSGS----DFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIE 113 (368)
T ss_dssp EEEE--EETTTTEEEE--EEEECTT-C--EEEECTTSS----CEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEE
T ss_pred eEEE--EECCCCeEEE--EEeCCCC-C--ceEECCCCC----EEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEE
Confidence 7778 5666666655 4433433 3 799999994 444443 1289999999987 566654
Q ss_pred cCCCccC--CCCEEEEEEcCCCCCEEEEEeC--CCeEEE--EECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcE
Q 040307 116 SNKTSEF--SSAITSFDWAGFDTRRVATCSV--DTTCVI--WDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSV 189 (339)
Q Consensus 116 ~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~--d~~v~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i 189 (339)
......+ ......+.++| ++++++++.. +..|.+ +|+.+ +..+.. .+. ..+.-.....+++.+.|+.+
T Consensus 114 v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~-~~~~p~g~~~~~~~~~dg~~ 187 (368)
T 1mda_H 114 LPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC-FHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp ETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC-CCCEEEETTEEECCCCTTSC
T ss_pred CCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc-eEEccCCCeEEEEEcCCCCE
Confidence 3200000 01234789998 9999888875 467888 88876 344431 111 11111234566677788999
Q ss_pred EEEECCC----CcceeeEE--eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC-ceEEEec-------CC
Q 040307 190 RVFDLRD----KERSTIIY--ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN-PVVVLSK-------HE 255 (339)
Q Consensus 190 ~i~d~~~----~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~-~~~~~~~-------~~ 255 (339)
.+.|+.. ........ ..+-...+. . .+ ++..++..+. +. +.+.|...... .+..+.. +.
T Consensus 188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADN 260 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CE-EEEEECCCCcceEEEEEEeccccccccc
Confidence 8999886 22111000 000112333 3 55 4454444455 76 99999864221 1111110 00
Q ss_pred ---CCeeEEEeccCCCCeEEEE-e---C-----CCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCC
Q 040307 256 ---GSVNGISWAPLYGRRLCSV-A---D-----DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLEL 323 (339)
Q Consensus 256 ---~~v~~~~~~p~~~~~l~~~-~---~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 323 (339)
.....++++|++. .++.+ . . ++.+.++|+.+.+ .+....-......++|+|+++
T Consensus 261 ~~p~g~~~v~~s~dg~-~lyV~~~~~~~~~~~~~~~~~ViD~~t~~-------------vv~~i~vg~~p~gi~~s~Dg~ 326 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTD-GIMILTVEHSRSCLAAAENTSSVTASVGQ-------------TSGPISNGHDSDAIIAAQDGA 326 (368)
T ss_dssp EEECSSSCEEEETTTT-EEEEEEEECSSCTTSCEEEEEEEESSSCC-------------EEECCEEEEEECEEEECCSSS
T ss_pred cccCcceeeEEcCCCC-EEEEEeccccCcccccCCCEEEEECCCCe-------------EEEEEECCCCcceEEECCCCC
Confidence 1122378999985 55543 3 2 2356699999987 343333334689999999998
Q ss_pred ceE-EEe-cCCeEEEEeC
Q 040307 324 DWI-AIA-FVNKLQLLKV 339 (339)
Q Consensus 324 ~l~-~~~-~d~~v~~w~v 339 (339)
.++ +.. .++.|.++++
T Consensus 327 ~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 327 SDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp CEEEEEETTTTEEEEEES
T ss_pred EEEEEccCCCCeEEEEEC
Confidence 654 555 5899999874
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=4.4e-08 Score=89.71 Aligned_cols=181 Identities=11% Similarity=0.006 Sum_probs=115.8
Q ss_pred EEEEcCCCCCEEEEEeCCCe-------------------EEEEECCCCeeeeeeec--cC-------CceeEEEec-CCc
Q 040307 128 SFDWAGFDTRRVATCSVDTT-------------------CVIWDIDREILETQLVA--HD-------REVYDISWG-GFN 178 (339)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~-------------------v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~ 178 (339)
.++++| +..+++.+..++. |..+|.++++.+..++. |. .+....... ++.
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 567887 7788888887764 99999999998877753 21 111111222 343
Q ss_pred ---EEEEEeCCCcEEEEECCCCcceeeEEeCC-------------------------CCC-----------CCeEEEEEe
Q 040307 179 ---VFASVSGDCSVRVFDLRDKERSTIIYENP-------------------------VQD-----------CPLLRLEWN 219 (339)
Q Consensus 179 ---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------~~~-----------~~v~~~~~~ 219 (339)
.++.++.+|.++++|.++++........+ ... ..-..++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999988542211110 000 011236888
Q ss_pred cCCCCeEEEEee---------------------------------------------CCCeEEEEecCCCCCceEEEecC
Q 040307 220 KADPRFMATVGM---------------------------------------------DSNKVVVLDIRFPTNPVVVLSKH 254 (339)
Q Consensus 220 p~~~~~l~~~~~---------------------------------------------d~~~i~i~d~~~~~~~~~~~~~~ 254 (339)
| +..++++... ++. |..||+.+ ++.+.++..+
T Consensus 398 p-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~-l~A~D~~t-G~~~W~~~~~ 474 (689)
T 1yiq_A 398 P-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK-LIAWDPVK-QQAAWEVPYV 474 (689)
T ss_dssp T-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE-EEEEETTT-TEEEEEEEES
T ss_pred C-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee-EEEEECCC-CCeEeEccCC
Confidence 8 5556665532 244 88999987 5556666554
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEE
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIA 327 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~ 327 (339)
. .+..-.+...+ .+++.++.||.++.||.++++ .+-.+ .+.....-+.|..+|+.+++
T Consensus 475 ~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~-------------~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 475 T-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGE-------------KLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp S-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------------EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred C-CccCccceECC-CEEEEECCCCcEEEEECCCCc-------------cceeeeCCCCcccCceEEEECCEEEEE
Confidence 3 33444566666 489999999999999999988 34222 22222344677788876664
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.15 E-value=6.5e-08 Score=82.16 Aligned_cols=257 Identities=9% Similarity=-0.067 Sum_probs=145.6
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCce-EEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcce
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPT-NIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTE 109 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~ 109 (339)
+..+.+++ .++.|..++ ..+++..- . ......+. .... .++ .+++...+ .|..+|..+++
T Consensus 103 ~~~v~v~~----~~g~l~a~d--~~tG~~~W--~--~~~~~~~~~~p~~-~~~-----~v~v~~~~g~l~~~d~~tG~-- 164 (376)
T 3q7m_A 103 GGHVYIGS----EKAQVYALN--TSDGTVAW--Q--TKVAGEALSRPVV-SDG-----LVLIHTSNGQLQALNEADGA-- 164 (376)
T ss_dssp TTEEEEEE----TTSEEEEEE--TTTCCEEE--E--EECSSCCCSCCEE-ETT-----EEEEECTTSEEEEEETTTCC--
T ss_pred CCEEEEEc----CCCEEEEEE--CCCCCEEE--E--EeCCCceEcCCEE-ECC-----EEEEEcCCCeEEEEECCCCc--
Confidence 44666677 588888854 44444433 1 11111221 1122 244 45554445 89999998887
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc----------e-eEEEecCCc
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE----------V-YDISWGGFN 178 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~----------v-~~~~~~~~~ 178 (339)
.+.................... .+..++.++.++.|..+|..+++.+......... + ..... .+.
T Consensus 165 ~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~ 240 (376)
T 3q7m_A 165 VKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNG 240 (376)
T ss_dssp EEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETT
T ss_pred EEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECC
Confidence 4433332210000000011122 2356777888999999999999877665422110 0 01111 256
Q ss_pred EEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec-CCCC
Q 040307 179 VFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-HEGS 257 (339)
Q Consensus 179 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~ 257 (339)
.+..++.++.+..+|.++++..-.. .. .....+.. .+..+++++.++. +..+|..+ ++.+..... ....
T Consensus 241 ~v~~~~~~g~l~~~d~~tG~~~w~~-~~----~~~~~~~~---~~~~l~~~~~~g~-l~~~d~~t-G~~~w~~~~~~~~~ 310 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLRSGQIMWKR-EL----GSVNDFIV---DGNRIYLVDQNDR-VMALTIDG-GVTLWTQSDLLHRL 310 (376)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEE-CC----CCEEEEEE---ETTEEEEEETTCC-EEEEETTT-CCEEEEECTTTTSC
T ss_pred EEEEEecCcEEEEEECCCCcEEeec-cC----CCCCCceE---ECCEEEEEcCCCe-EEEEECCC-CcEEEeecccCCCc
Confidence 7777888999999999988743221 11 23444444 3566777788888 99999987 455544442 1222
Q ss_pred eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc-cceeEE-EEecCCCCceEEEecCCeEE
Q 040307 258 VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS-MAEINV-VRWSPLELDWIAIAFVNKLQ 335 (339)
Q Consensus 258 v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~-~~~~p~~~~l~~~~~d~~v~ 335 (339)
+...... + ..|+.++.+|.|.++|..+++ .+..... ...+.. ... .+ ..++.++.+|.|.
T Consensus 311 ~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~-------------~~~~~~~~~~~~~~~~~~-~~-~~l~v~~~~G~l~ 372 (376)
T 3q7m_A 311 LTSPVLY--N-GNLVVGDSEGYLHWINVEDGR-------------FVAQQKVDSSGFQTEPVA-AD-GKLLIQAKDGTVY 372 (376)
T ss_dssp CCCCEEE--T-TEEEEECTTSEEEEEETTTCC-------------EEEEEECCTTCBCSCCEE-ET-TEEEEEBTTSCEE
T ss_pred ccCCEEE--C-CEEEEEeCCCeEEEEECCCCc-------------EEEEEecCCCcceeCCEE-EC-CEEEEEeCCCEEE
Confidence 3333332 3 378888999999999998877 3322211 222221 222 23 3588889999999
Q ss_pred EEe
Q 040307 336 LLK 338 (339)
Q Consensus 336 ~w~ 338 (339)
.|+
T Consensus 373 ~~~ 375 (376)
T 3q7m_A 373 SIT 375 (376)
T ss_dssp EEE
T ss_pred EEe
Confidence 886
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=6.5e-08 Score=88.44 Aligned_cols=182 Identities=9% Similarity=0.023 Sum_probs=117.2
Q ss_pred EEEEcCCCCCEEEEEeCCC-------------------eEEEEECCCCeeeeeeec--cC-------CceeEEEec-CC-
Q 040307 128 SFDWAGFDTRRVATCSVDT-------------------TCVIWDIDREILETQLVA--HD-------REVYDISWG-GF- 177 (339)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~-------------------~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~-~~- 177 (339)
.++++| +..+++.+..++ .|..+|.++++.+..++. |. ....-+... ++
T Consensus 247 ~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 247 SMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 567887 677888777654 599999999998877653 21 111222222 45
Q ss_pred --cEEEEEeCCCcEEEEECCCCcceeeEEeCCCC-------CCC-e------------------------EEEEEecCCC
Q 040307 178 --NVFASVSGDCSVRVFDLRDKERSTIIYENPVQ-------DCP-L------------------------LRLEWNKADP 223 (339)
Q Consensus 178 --~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~-v------------------------~~~~~~p~~~ 223 (339)
..++.++.+|.++++|.++++..-.....+.. .+. + ..++++| +.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~ 404 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QT 404 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CC
Confidence 68899999999999999998854333211000 000 1 2568888 55
Q ss_pred CeEEEEeeC-------------------------------------------CCeEEEEecCCCCCceEEEecCCCCeeE
Q 040307 224 RFMATVGMD-------------------------------------------SNKVVVLDIRFPTNPVVVLSKHEGSVNG 260 (339)
Q Consensus 224 ~~l~~~~~d-------------------------------------------~~~i~i~d~~~~~~~~~~~~~~~~~v~~ 260 (339)
.++++...+ +. |..||+.+ ++.+.++.. ..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-l~A~D~~t-G~~~W~~~~-~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR-LLAWDPVA-QKAAWSVEH-VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE-EEEEETTT-TEEEEEEEE-SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE-EEEEeCCC-CcEEeecCC-CCCCcC
Confidence 666665432 44 99999987 555555553 345556
Q ss_pred EEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--cccceeEEEEecCCCCceEEE
Q 040307 261 ISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--QSMAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 261 ~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~ 328 (339)
..+...+ .+++.++.||.+++||..+++ .+..+ .+.....-+.|.++|+.+++.
T Consensus 482 g~~~~~g-~~v~~g~~dg~l~a~D~~tG~-------------~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 482 GTLTTAG-NVVFQGTADGRLVAYHAATGE-------------KLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CEEEETT-TEEEEECTTSEEEEEETTTCC-------------EEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cceEeCC-CEEEEECCCCcEEEEECCCCc-------------eeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 6677777 488889999999999999988 33222 222233446667888765543
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.12 E-value=7e-08 Score=76.75 Aligned_cols=204 Identities=9% Similarity=0.059 Sum_probs=137.7
Q ss_pred ecCCC--CceEEEEcCCCCCCCCCeEEEeC---C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307 68 FDHPY--TPTNIAFFPSEETLNPDIVATSG---D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT 141 (339)
Q Consensus 68 ~~~~~--~v~~l~~~~~~~~~~~~~la~~~---~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 141 (339)
+.|.. ....+.|++++ .++++.+ + .|+++|+.+++ .+..+.... . .....+++. .+.+.++
T Consensus 15 ~p~~~~~f~~Gl~~~~dg-----~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~---~-~fgeGi~~~--g~~lyv~ 81 (266)
T 2iwa_A 15 FPHDPYAFTQGLVYAEND-----TLFESTGLYGRSSVRQVALQTGK--VENIHKMDD---S-YFGEGLTLL--NEKLYQV 81 (266)
T ss_dssp EECCTTCCEEEEEECSTT-----EEEEEECSTTTCEEEEEETTTCC--EEEEEECCT---T-CCEEEEEEE--TTEEEEE
T ss_pred EECCCCCCcccEEEeCCC-----eEEEECCCCCCCEEEEEECCCCC--EEEEEecCC---C-cceEEEEEe--CCEEEEE
Confidence 45554 35899999987 7777764 2 99999999998 444443211 0 123356665 3455566
Q ss_pred EeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC--CCCCeEEEEEe
Q 040307 142 CSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPV--QDCPLLRLEWN 219 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~ 219 (339)
.-.++.+.++|..+.+.+.++......-..++. ++..++++..++.|.++|..+.+....+..... .-..+..+.|.
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EecCCEEEEEECCCCcEEEEEECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 667899999999999988888532122234555 455555666789999999999876555443211 11246778887
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-------------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-------------EGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
++.+.+....++. |.+.|..+ ++.+..+... ....+.|+|+|++.++++++...+.+.+.++.
T Consensus 161 --dg~lyvn~~~~~~-V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 161 --NGEVWANIWQTDC-IARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp --TTEEEEEETTSSE-EEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred --CCEEEEecCCCCe-EEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 5654444434555 99999987 6666666532 13568999999987778888888999999988
Q ss_pred CCC
Q 040307 287 GPG 289 (339)
Q Consensus 287 ~~~ 289 (339)
...
T Consensus 237 ~~~ 239 (266)
T 2iwa_A 237 LVR 239 (266)
T ss_dssp ECC
T ss_pred ccc
Confidence 754
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.11 E-value=1.3e-09 Score=90.81 Aligned_cols=234 Identities=9% Similarity=-0.039 Sum_probs=131.1
Q ss_pred CCceeeeeeccCCeeE-EEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCC
Q 040307 7 KKPGVHTYMAQWPIST-VAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEET 85 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~-i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 85 (339)
+++.+-++.....+.+ +....+ + .|.+++ .++.|..|+ .+++... .. ......+.++...+++
T Consensus 8 ~g~~~W~~~~~~~~~~~~~~d~~---g-~l~v~t----~~~~l~~~d---~~g~~~~--~~-~~~~~~~~~~~~~~~g-- 71 (330)
T 3hxj_A 8 DCKIKWEFLIGNSIDSSPILAKN---G-TIYLGS----SNKNLYAIN---TDGSVKW--FF-KSGEIIECRPSIGKDG-- 71 (330)
T ss_dssp ----CCTTTSCEEECCCCEECTT---S-CEECSS----TTTTTEEEC---TTSCEEE--SS-CGGGEEEECCEETTTT--
T ss_pred CceEEEEEeCCCCcccCceEccC---C-eEEEEc----CCCEEEEEC---CCCcEEE--EE-ecCCCcccceEEecCC--
Confidence 3445555544433322 233233 4 466666 578888855 2333322 11 1122335667777777
Q ss_pred CCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc
Q 040307 86 LNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH 165 (339)
Q Consensus 86 ~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 165 (339)
.+++...+ +..+|. +++ ....+.... ......... +..+..++.++.|..+|.. ++........
T Consensus 72 ---~l~v~t~~-l~~~d~-~g~--~~~~~~~~~-----~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~ 135 (330)
T 3hxj_A 72 ---TIYFGSDK-VYAINP-DGT--EKWRFDTKK-----AIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTK 135 (330)
T ss_dssp ---EECCSSCE-EEEECC-CGG--GGGGSCC----------CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred ---cEEEecCc-EEEECC-CCc--EEEEEECCC-----CcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence 56555445 777775 333 211121111 111222222 4567778889999999988 7766666545
Q ss_pred CCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC
Q 040307 166 DREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT 245 (339)
Q Consensus 166 ~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~ 245 (339)
...+.++...++..+..++.++.|..+|.. ++.... ... ....+.++...+ ++.+. +++ +. +..+| .. +
T Consensus 136 ~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~-~~~--~~~~~~~~~~d~-~g~l~-v~t--~~-l~~~d-~~-g 204 (330)
T 3hxj_A 136 KAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWR-FKT--NDAITSAASIGK-DGTIY-FGS--DK-VYAIN-PD-G 204 (330)
T ss_dssp SCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEE-EEC--SSCCCSCCEECT-TCCEE-EES--SS-EEEEC-TT-S
T ss_pred CceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEE-Eec--CCCceeeeEEcC-CCEEE-EEe--CE-EEEEC-CC-C
Confidence 555566666634446667788999999988 543322 222 234556667754 55544 445 66 99999 44 4
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~ 285 (339)
+.+.........+.++...+++ .|..++.++.+..+|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINP 242 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECT
T ss_pred cEEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECC
Confidence 5555555555678888888887 4566666777777763
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.10 E-value=2e-08 Score=84.23 Aligned_cols=207 Identities=11% Similarity=0.026 Sum_probs=122.2
Q ss_pred CCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeeee-------eccCCceeEEEec-CCcEEEEEeC-----CCc
Q 040307 124 SAITSFDWAGFDTRRVATCS--VDTTCVIWDIDREILETQL-------VAHDREVYDISWG-GFNVFASVSG-----DCS 188 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~-------~~~~~~v~~~~~~-~~~~l~~~~~-----d~~ 188 (339)
.....++++| +++++++.. .++.++||.+.+++. ..+ ..+-..+..++++ +++++++-.. ++.
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 3678999998 888888864 234245555545542 222 1234578999999 5665555433 578
Q ss_pred EEEEECCCCcceeeEEeC---CCCCCCeEEEEEecCCCCeEEEEe---eCCCeEEEEecCCCCCceEEEecC--------
Q 040307 189 VRVFDLRDKERSTIIYEN---PVQDCPLLRLEWNKADPRFMATVG---MDSNKVVVLDIRFPTNPVVVLSKH-------- 254 (339)
Q Consensus 189 i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~---~d~~~i~i~d~~~~~~~~~~~~~~-------- 254 (339)
|.+||+.+++....+... ..+...+..++++|.++..+++.. .++. |.+||+.. ++....+..|
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~-g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQT-GLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTT-CCEEEECTTCTTTSCCSC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECCC-CCEEEEecCCCccccccc
Confidence 999999987743333221 012235689999974454445544 4566 99999875 3333333221
Q ss_pred ---------------------CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCC--CCCCCCCCCCCcccceeeecccc
Q 040307 255 ---------------------EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGP--GYRSGNGGPSGDVEPELCYQSMA 311 (339)
Q Consensus 255 ---------------------~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 311 (339)
...+..++|+|++ +.|+.+..++. ++|.+... ..... ........+...++..
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~-~l~~~~~~~~~~~~~--~~~~~~~~~~~~g~~g 248 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHST-SMYRIKSADLSNLQL--TDAELGSKIERYSEKP 248 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCS-EEEEEEHHHHTCTTC--CHHHHHTTCEEEEECC
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCC-eEEEEEHHHhcCCCC--ChhhhhcceEecccCC
Confidence 1236889999999 57777776653 45554421 10000 0000000011223344
Q ss_pred eeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 312 EINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
....++++++|..+++...++.|.+|+
T Consensus 249 ~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp SCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred CCceEEECCCCCEEEEccCCCeEEEEE
Confidence 567899999998777777888999986
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.09 E-value=3e-07 Score=74.08 Aligned_cols=223 Identities=10% Similarity=0.036 Sum_probs=128.6
Q ss_pred eEEEeCCcEEEEeecCCccee---EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 90 IVATSGDSLRLWEIHDDRTEL---KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 90 ~la~~~~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
++.+..+.|+.++++...... ...+.... ..+.+++|+|.++.++++-...+.|..+++........+....
T Consensus 4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred EEEEcCCeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 333333488888887654210 11121111 3567999997344455555567899999987654333332222
Q ss_pred CceeEEEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC--CCeEEEEecC
Q 040307 167 REVYDISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD--SNKVVVLDIR 242 (339)
Q Consensus 167 ~~v~~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--~~~i~i~d~~ 242 (339)
.....++++ . +.++++-...+.|.++++...... .+... .......++++| ++..|+.+... ...|..+++.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~--~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDT--GLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS--SCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETT
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEEC--CCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecC
Confidence 467889998 4 445555556788999998754422 22222 124678999998 44444444432 2238888875
Q ss_pred CCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC
Q 040307 243 FPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL 321 (339)
Q Consensus 243 ~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 321 (339)
. .....+. ........++++|++..++++-...+.|.++++.... .............++..
T Consensus 155 g--~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~-------------~~~~~~~~~~P~gi~~d-- 217 (267)
T 1npe_A 155 G--TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-------------RRKVLEGLQYPFAVTSY-- 217 (267)
T ss_dssp S--CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-------------EEEEEECCCSEEEEEEE--
T ss_pred C--CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc-------------eEEEecCCCCceEEEEe--
Confidence 4 2223332 2234678999999875455666667889999987543 12121222233456553
Q ss_pred CCceEEEe-cCCeEEEEe
Q 040307 322 ELDWIAIA-FVNKLQLLK 338 (339)
Q Consensus 322 ~~~l~~~~-~d~~v~~w~ 338 (339)
+..++.+. .++.|..++
T Consensus 218 ~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp TTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEEe
Confidence 34455444 556777665
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=3.4e-08 Score=82.09 Aligned_cols=210 Identities=11% Similarity=-0.059 Sum_probs=132.5
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCC
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDR 167 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 167 (339)
.+.+...+ .+..+|.+ ++ ......... ..+.++...+ ++. +..++.++.|..+|.. ++....+.....
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~--~~~~~~~~~-----~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GT--EKWRFKTKK-----AIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp EEEEECTTSEEEEECTT-SC--EEEEEECSS-----CCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred EEEEEecCCEEEEEcCC-CC--EEEEEcCCC-----ceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 45554445 89999987 54 333333332 3345555654 444 6667788999999998 776666655555
Q ss_pred ceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCC
Q 040307 168 EVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTN 246 (339)
Q Consensus 168 ~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~ 246 (339)
.+.++... ++. +..++ +.|..+| .+++..-. ... ....+.++...+ ++ .|.+++.++. +..+|.. +.
T Consensus 178 ~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~-~~~--~~~~~~~~~~~~-~g-~l~v~t~~~g-l~~~~~~--g~ 245 (330)
T 3hxj_A 178 ITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWN-FYA--GYWTVTRPAISE-DG-TIYVTSLDGH-LYAINPD--GT 245 (330)
T ss_dssp CCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEE-ECC--SSCCCSCCEECT-TS-CEEEEETTTE-EEEECTT--SC
T ss_pred ceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEE-Ecc--CCcceeceEECC-CC-eEEEEcCCCe-EEEECCC--CC
Confidence 66777776 455 44444 7899999 55543222 222 234567777765 54 4556677777 8888743 44
Q ss_pred ceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCce
Q 040307 247 PVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDW 325 (339)
Q Consensus 247 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l 325 (339)
.+..+......+..+...+++ .|..++.+|.|..+|. .++ ..... .....+.++...+++. +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~-------------~~~~~~~~~~~~~~~~~d~~g~-l 308 (330)
T 3hxj_A 246 EKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGT-------------EKWNFETGSWIIATPVIDENGT-I 308 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSC-------------EEEEEECSSCCCSCCEECTTCC-E
T ss_pred EeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCc-------------EEEEEEcCCccccceEEcCCCE-E
Confidence 455555544445566666665 5777888888999985 333 22222 2344567777778875 7
Q ss_pred EEEecCCeEEEEe
Q 040307 326 IAIAFVNKLQLLK 338 (339)
Q Consensus 326 ~~~~~d~~v~~w~ 338 (339)
..++.+|.+++..
T Consensus 309 ~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 309 YFGTRNGKFYALF 321 (330)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEEcCCCeEEEEe
Confidence 7888999888764
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.07 E-value=4.8e-07 Score=71.95 Aligned_cols=189 Identities=8% Similarity=-0.035 Sum_probs=125.1
Q ss_pred EEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccCC-ceeEEEecCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307 126 ITSFDWAGFDTRRVATCSV--DTTCVIWDIDREILETQLVAHDR-EVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 126 i~~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 202 (339)
...+.|+| ++.++++.+. ++.|.++|+.+++.+..+.-... ....+++.++.++++.-.++.+.++|..+.+....
T Consensus 23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence 57999997 6665555553 68999999999998887642221 22356666556666666789999999998876555
Q ss_pred EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC-----CCeeEEEeccCCCCeEEEEeCC
Q 040307 203 IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-----GSVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~d 277 (339)
+... . . . ...+++ +++.++++..++. |.++|..+ .+.+..+.... ..++.+.|. ++ .+.+....+
T Consensus 102 i~~g-~-~-~--g~glt~-Dg~~l~vs~gs~~-l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~ 171 (266)
T 2iwa_A 102 FTHQ-M-K-D--GWGLAT-DGKILYGSDGTSI-LYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQT 171 (266)
T ss_dssp EECC-S-S-S--CCEEEE-CSSSEEEECSSSE-EEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTS
T ss_pred EECC-C-C-C--eEEEEE-CCCEEEEECCCCe-EEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCC
Confidence 4322 1 1 1 133455 5666666555555 99999987 45555554321 136788888 66 466666578
Q ss_pred CcEEEEEecCCCCCCCCCCCCCcccceeeecc--------------cceeEEEEecCCCCceEE-EecCCeEEEEe
Q 040307 278 SRALIWEVVGPGYRSGNGGPSGDVEPELCYQS--------------MAEINVVRWSPLELDWIA-IAFVNKLQLLK 338 (339)
Q Consensus 278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~~p~~~~l~~-~~~d~~v~~w~ 338 (339)
+.|.+.|..+++ ....... ....+.|+|+|++..++. +...+.+...+
T Consensus 172 ~~V~vID~~tg~-------------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 172 DCIARISAKDGT-------------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp SEEEEEETTTCC-------------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CeEEEEECCCCc-------------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 899999999887 2222111 135689999999877665 44667776654
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=5.8e-11 Score=100.64 Aligned_cols=177 Identities=8% Similarity=-0.064 Sum_probs=94.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCe
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPL 213 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v 213 (339)
++..+++++.||.|+.||..+++.+..+.. +.+.+..+. ++..+++++.|+.|+.||..+++..-.. ... ....+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~-~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFT-IPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC-SCC-HHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-ecc-Ccccc
Confidence 567899999999999999999998888765 455544444 5667788889999999999877643221 110 00000
Q ss_pred -EEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCC
Q 040307 214 -LRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS 292 (339)
Q Consensus 214 -~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~ 292 (339)
.+..+. .+..+++++.++. ++.||.++ ++.+..+..+. ...++|++ ..+++++.|+.|+.||..+++
T Consensus 84 ~~sp~~~--~~~~v~~g~~dg~-v~a~D~~t-G~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~--- 151 (369)
T 2hz6_A 84 QASPCRS--SDGILYMGKKQDI-WYVIDLLT-GEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTRE--- 151 (369)
T ss_dssp TTCSCC-------CCCCEEEEE-EEEECCC----------------------------EEEEEEEEEEECCCSSSSS---
T ss_pred ccCceEe--cCCEEEEEeCCCE-EEEEECCC-CcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCC---
Confidence 011111 3456677788888 99999987 55555555443 24556776 588889999999999998877
Q ss_pred CCCCCCCcccceeeecccceeEEEEecCCC---CceEEEecCCeEEEEe
Q 040307 293 GNGGPSGDVEPELCYQSMAEINVVRWSPLE---LDWIAIAFVNKLQLLK 338 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~---~~l~~~~~d~~v~~w~ 338 (339)
..-..... .....++.++. ..+++++.|+.|+.|+
T Consensus 152 ----------~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d 189 (369)
T 2hz6_A 152 ----------LRWNATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVD 189 (369)
T ss_dssp ----------CCCEEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEEC
T ss_pred ----------EEEeEecc-cccCccccCCccccceEEEECCCCEEEEEE
Confidence 22111110 11223333321 3467778888888776
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.99 E-value=6.1e-06 Score=77.23 Aligned_cols=283 Identities=10% Similarity=-0.033 Sum_probs=163.8
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE----eecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL----IFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..|.++...++ +.+.+ |+ .++.|.+|+ ..+..+...... ..-....|.++...+++ .+.+.
T Consensus 215 ~~i~~i~~d~~---g~lwi-gt----~~~Gl~~~~--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----~lWig 279 (795)
T 4a2l_A 215 KQIQAILQQSP---TRIWV-AT----EGAGLFLIN--PKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQN-----RLWIG 279 (795)
T ss_dssp CCEEEEEEEET---TEEEE-EE----BSSCEEEEE--TTTTEEEEECCCTTCTTSCSCSBEEEEEECTTS-----CEEEE
T ss_pred CeeEEEEEcCC---CCEEE-EE----CCCCeEEEe--CCCCeEEEeecCCCCccccCCCeEEEEEEcCCC-----CEEEE
Confidence 45777777766 66444 44 244577744 444333320000 00113568999998888 66665
Q ss_pred eCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec-------cC
Q 040307 94 SGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA-------HD 166 (339)
Q Consensus 94 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-------~~ 166 (339)
..+-|.+|+..+.+.............-....|.++...+ ++. |-.|+.++-|..++..+... ..+.. ..
T Consensus 280 t~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~ 356 (795)
T 4a2l_A 280 TFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSD 356 (795)
T ss_dssp ESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSC
T ss_pred eCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCC
Confidence 5457888988776422211100000011125799998885 555 55677778889998765432 12211 23
Q ss_pred CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC-----CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEec
Q 040307 167 REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN-----PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDI 241 (339)
Q Consensus 167 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~ 241 (339)
..|.++.......|..|+.++-|..||..+.......... ......|.++...+ ++++|.+|+.+++ |..||.
T Consensus 357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~G-l~~~d~ 434 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGG-LSILHR 434 (795)
T ss_dssp SSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTE-EEEEET
T ss_pred CeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCc-eeEEeC
Confidence 4688888874334556777778999998876532221110 01235788998875 6764667777777 999998
Q ss_pred CCCCCceEEEe-----cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-----ecccc
Q 040307 242 RFPTNPVVVLS-----KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-----YQSMA 311 (339)
Q Consensus 242 ~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 311 (339)
.. ++ ...+. .....|.++...+++. |..|+. +.+.+||..... ...... .-...
T Consensus 435 ~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 435 NS-GQ-VENFNQRNSQLVNENVYAILPDGEGN--LWLGTL-SALVRFNPEQRS-----------FTTIEKEKDGTPVVSK 498 (795)
T ss_dssp TT-CC-EEEECTTTSCCSCSCEEEEEECSSSC--EEEEES-SCEEEEETTTTE-----------EEECCBCTTCCBCCCC
T ss_pred CC-Cc-EEEeecCCCCcCCCeeEEEEECCCCC--EEEEec-CceeEEeCCCCe-----------EEEccccccccccCCc
Confidence 75 32 33332 1245789999888873 444444 458888876543 001100 01235
Q ss_pred eeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 312 EINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 312 ~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
.|.++...+++..++++ . +.|..|+
T Consensus 499 ~i~~i~~d~~g~lWigt-~-~Gl~~~~ 523 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGG-E-EGLSVFK 523 (795)
T ss_dssp CEEEEEECTTCCEEEEE-S-SCEEEEE
T ss_pred eEEEEEECCCCCEEEEe-C-CceEEEe
Confidence 68899999888755544 3 4555553
No 238
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.99 E-value=1.4e-07 Score=86.19 Aligned_cols=281 Identities=9% Similarity=-0.044 Sum_probs=153.2
Q ss_pred eeEEEeee-cCCcccEEEEeeecccc-----CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 20 ISTVAWSV-RHDRKSRLAVGSFLEDY-----SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 20 v~~i~~sp-~~~~~~~la~g~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
-.++++.| + +++++.|+...+. .+.-.++.++.....+.....+...+.....++++..++ ++++.
T Consensus 188 ~~~~av~~~~---g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-----~lyv~ 259 (656)
T 1k3i_A 188 PAAAAIEPTS---GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-----QIVVT 259 (656)
T ss_dssp CSEEEEETTT---TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-----CEEEE
T ss_pred ceeEEEEecC---CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-----CEEEe
Confidence 34677787 7 8888988731110 122233445555555554333433344455568888999 89999
Q ss_pred eC-C--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-CC-----CeEEEEECCCCeeeeeeec
Q 040307 94 SG-D--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-VD-----TTCVIWDIDREILETQLVA 164 (339)
Q Consensus 94 ~~-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-----~~v~i~d~~~~~~~~~~~~ 164 (339)
|+ + .+.+||..+.++.....+.... . -.+++..+ ++++++.|+ .+ ..+.+||..+.+-.. +..
T Consensus 260 GG~~~~~v~~yd~~t~~W~~~~~~~~~R-----~-~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~ 331 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSDSWIPGPDMQVAR-----G-YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPN 331 (656)
T ss_dssp CSSSTTCEEEEEGGGTEEEECCCCSSCC-----S-SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETT
T ss_pred CCCCCCceEEecCcCCceeECCCCCccc-----c-ccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCccee-CCC
Confidence 88 3 8999999988755443332211 1 12344544 889999988 34 579999998765222 100
Q ss_pred -----cCCceeEEEec-CCcEEEEEeCC---------CcEEEEECCCCcceeeEEeCCC------CCCCeEEEEEecCCC
Q 040307 165 -----HDREVYDISWG-GFNVFASVSGD---------CSVRVFDLRDKERSTIIYENPV------QDCPLLRLEWNKADP 223 (339)
Q Consensus 165 -----~~~~v~~~~~~-~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~ 223 (339)
....-....+. ++..++.++.+ ..+..||..+............ ....-.++.|...++
T Consensus 332 ~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~ 411 (656)
T 1k3i_A 332 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG 411 (656)
T ss_dssp SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred ccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCC
Confidence 00000001122 44455555444 3567888887653322211100 111234555554578
Q ss_pred CeEEEEeeCC-------C---eEEEEecCCCCCceEEEe---cCCCCe-eEEEeccCCCCeEEEEeCC-----------C
Q 040307 224 RFMATVGMDS-------N---KVVVLDIRFPTNPVVVLS---KHEGSV-NGISWAPLYGRRLCSVADD-----------S 278 (339)
Q Consensus 224 ~~l~~~~~d~-------~---~i~i~d~~~~~~~~~~~~---~~~~~v-~~~~~~p~~~~~l~~~~~d-----------g 278 (339)
+++++|+.++ . .+.+||.... . ...+. .+.... .++...|++ ++++.|+.+ .
T Consensus 412 ~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~-W~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~ 488 (656)
T 1k3i_A 412 KILTFGGSPDYQDSDATTNAHIITLGEPGTS-P-NTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVF 488 (656)
T ss_dssp EEEEECCBSSSSSSBCCCCEEEEECCSTTSC-C-EEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCC
T ss_pred eEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-C-eeEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCccc
Confidence 8888888542 0 2777887652 2 22221 122222 345667888 688888754 4
Q ss_pred cEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceEEEec
Q 040307 279 RALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 279 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
.+.+||..... ...+... ..........+.|+++.+++++.
T Consensus 489 ~v~~ydp~t~~-----------W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 489 TPEIYVPEQDT-----------FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCEEEEGGGTE-----------EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceEEEcCCCCc-----------eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 68899987644 1111000 01111224455689987777763
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.98 E-value=3.8e-10 Score=95.67 Aligned_cols=179 Identities=9% Similarity=-0.077 Sum_probs=94.5
Q ss_pred CeEEEe-CC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccC
Q 040307 89 DIVATS-GD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHD 166 (339)
Q Consensus 89 ~~la~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 166 (339)
..++++ .+ .|+.||..+++ .+..+.. . .+.+..+.. ++..+++++.|+.|+.||.++++.+..+..+.
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~--~~W~~~~-~------~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~ 79 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGS--IKWTLKE-D------PVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI 79 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCC--EEEEEEC-C------CSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred CEEEEEcCCCEEEEEECCCCC--EEEEecC-C------CceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence 344444 45 99999999987 4444443 1 222333333 66778888899999999999888765554321
Q ss_pred C-cee-EEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCC
Q 040307 167 R-EVY-DISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFP 244 (339)
Q Consensus 167 ~-~v~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~ 244 (339)
. .+. ...+..+..+++++.++.|+.||.++++..-..... . ...++| .+..+++++.++. |+.||.++
T Consensus 80 ~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p-~~~~v~~~~~dg~-v~a~d~~t- 149 (369)
T 2hz6_A 80 PELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSP-STSLLYLGRTEYT-ITMYDTKT- 149 (369)
T ss_dssp HHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------------EEEEEEEEE-EECCCSSS-
T ss_pred ccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccc-cCCEEEEEecCCE-EEEEECCC-
Confidence 1 111 111223556778888999999999988743332211 1 234566 7788888888888 99999987
Q ss_pred CCceEEEecCCCCeeEEEeccCC--CCeEEEEeCCCcEEEEEecCCC
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLY--GRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
++.+..+..+. .....++++. ...+++++.||.|..||..+++
T Consensus 150 G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 150 RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 44444443221 2233344431 0257778899999999998877
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.97 E-value=4.8e-07 Score=71.15 Aligned_cols=195 Identities=13% Similarity=0.089 Sum_probs=122.7
Q ss_pred CceeeeeeccCCe--eEEEeeecCCcccEEEEeeeccccCC--eEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307 8 KPGVHTYMAQWPI--STVAWSVRHDRKSRLAVGSFLEDYSN--KIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE 83 (339)
Q Consensus 8 ~~~~~~~~~~~~v--~~i~~sp~~~~~~~la~g~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 83 (339)
.+.+.+|.|.... ..+.|+ + +.++.+.+ .+| .|+. ++.++++... .. .-..........+++
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~---~~LyestG----~~g~S~v~~--vD~~Tgkv~~--~~--~l~~~~FgeGit~~g 96 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-N---GYFYESTG----LNGRSSIRK--VDIESGKTLQ--QI--ELGKRYFGEGISDWK 96 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-T---TEEEEEEE----ETTEEEEEE--ECTTTCCEEE--EE--ECCTTCCEEEEEEET
T ss_pred eEEEEEecCCCCcccceEEEE-C---CEEEEECC----CCCCceEEE--EECCCCcEEE--EE--ecCCccceeEEEEeC
Confidence 3556677776554 678888 6 65555554 344 7888 6666666665 22 223344443333344
Q ss_pred CCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 84 ETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 84 ~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
. ++.+... + .+.+||.++.+ .+.++.... .=..+++ +++.|+.+..++.|.++|..+.+.+..
T Consensus 97 ~----~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~~------eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 97 D----KIVGLTWKNGLGFVWNIRNLR--QVRSFNYDG------EGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp T----EEEEEESSSSEEEEEETTTCC--EEEEEECSS------CCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred C----EEEEEEeeCCEEEEEECccCc--EEEEEECCC------CceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 2 4555543 3 99999999887 666666422 1124443 556666666688999999999887777
Q ss_pred eecc--C---CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC---------CCCCCeEEEEEecCCCCeEE
Q 040307 162 LVAH--D---REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP---------VQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 162 ~~~~--~---~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~~~~~p~~~~~l~ 227 (339)
+... . ..++.+.|.++.+++..-.+..|.+.|.++++....+.... ....-.+.|+|+| +++.|+
T Consensus 162 I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lf 240 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLF 240 (262)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEE
T ss_pred EEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC-CCCEEE
Confidence 6432 1 23456788777777766678899999999998655543320 1123568999999 555555
Q ss_pred EEeeC
Q 040307 228 TVGMD 232 (339)
Q Consensus 228 ~~~~d 232 (339)
+.+..
T Consensus 241 VTGK~ 245 (262)
T 3nol_A 241 VTGKL 245 (262)
T ss_dssp EEETT
T ss_pred EECCC
Confidence 54444
No 241
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.95 E-value=4e-06 Score=70.28 Aligned_cols=199 Identities=11% Similarity=-0.021 Sum_probs=122.0
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
+...|.+..++. .++.+....|+..+++... ....+... ..+..++|++.++.++.+-...+.|..+
T Consensus 34 d~~~C~~~~~~~-----~ll~~~~~~I~~i~~~g~~--~~~~~~~~------~~~~~l~~d~~~~~ly~~D~~~~~I~r~ 100 (349)
T 3v64_C 34 DRRSCKALGPEP-----VLLFANRIDIRQVLPHRSE--YTLLLNNL------ENAIALDFHHRRELVFWSDVTLDRILRA 100 (349)
T ss_dssp TSSCEEESSSCC-----EEEEECBSCEEEECTTSCC--EEEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-----eeEeecccceEEEeCCCCe--eEEeecCC------CceEEEEEeccccEEEEEeccCCceEEE
Confidence 344566655643 4444444488888887664 22223322 4578999997455555555567899999
Q ss_pred ECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307 152 DIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV 229 (339)
Q Consensus 152 d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 229 (339)
++........+.........+++. .++++++-...+.|.+.++........ ... .-.....++++|.++.++.+-
T Consensus 101 ~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-~~~--~l~~P~~iavdp~~g~ly~td 177 (349)
T 3v64_C 101 NLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-LWQ--SLEKPRAIALHPMEGTIYWTD 177 (349)
T ss_dssp ETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECT--TCSCEEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE-EeC--CCCCcceEEEecCcCeEEEec
Confidence 987655333332222345677776 466667766778999999876543322 222 235678999998555444444
Q ss_pred eeC-CCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 230 GMD-SNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 230 ~~d-~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
... +. |..+++.. .....+. ..-...+.++++|++.++.++-...+.|..+++....
T Consensus 178 ~~~~~~-I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 178 WGNTPR-IEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp CSSSCE-EEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cCCCCE-EEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence 333 44 88888764 2233332 2234578999999775455555566788888877544
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=5.5e-07 Score=79.10 Aligned_cols=192 Identities=13% Similarity=0.009 Sum_probs=130.1
Q ss_pred eEEEEcC-----CCCCCCCCeEEEeCC--cEEEEeecCCcceeEE--EeecCCCccCCCCEEEEEE-c-CCCCCEEEEEe
Q 040307 75 TNIAFFP-----SEETLNPDIVATSGD--SLRLWEIHDDRTELKS--LLNSNKTSEFSSAITSFDW-A-GFDTRRVATCS 143 (339)
Q Consensus 75 ~~l~~~~-----~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~-~-~~~~~~l~~~~ 143 (339)
.....|. |++ .++++..+ .|.+.|+++.+ ... .+... .....+++ + | +++++++++
T Consensus 88 hh~~~s~t~g~~DG~----~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~g------~~phg~~~~~~p-~~~~v~~~~ 154 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGR----FLFMNDKANTRVARVRCDVMK--CDAILEIPNA------KGIHGLRPQKWP-RSNYVFCNG 154 (595)
T ss_dssp CCEEEEEETTEEEEE----EEEEEETTTTEEEEEETTTTE--EEEEEECSSC------CSEEEEEECCSS-BCSEEEEEE
T ss_pred CccccCCCCCCcCCC----EEEEEcCCCCEEEEEECCCce--EeeEEeCCCC------CCCcceeeeecC-CCcEEEEec
Confidence 3455555 772 34444443 89999999987 444 43322 35778887 4 6 888888885
Q ss_pred ------------------CCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeCCC-----------------
Q 040307 144 ------------------VDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSGDC----------------- 187 (339)
Q Consensus 144 ------------------~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----------------- 187 (339)
.++.+.+.|..+.+...++.--. ....++.+ +++++++.+.+.
T Consensus 155 ~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 155 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp CSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred ccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence 24579999999988877775322 34566777 677777777543
Q ss_pred ---------------------cEEEEECCC--Ccc-eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC
Q 040307 188 ---------------------SVRVFDLRD--KER-STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 188 ---------------------~i~i~d~~~--~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
.|.+.|.++ ++. ...+... ....++.++| +|+++++++.....|.++|+.+
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg----~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE----SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGG
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC----CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcc
Confidence 477888877 333 2222222 3567899999 8888877765555599999985
Q ss_pred CC-----------CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 244 PT-----------NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 244 ~~-----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
.. ....++. -......++|+|+| ...++.-.|+.|.+||+..
T Consensus 309 ~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 309 FDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp HHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred cccccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 31 1122232 23467899999999 6777888999999999987
No 243
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.94 E-value=2.9e-06 Score=72.15 Aligned_cols=197 Identities=11% Similarity=-0.019 Sum_probs=119.1
Q ss_pred ceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 040307 74 PTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDI 153 (339)
Q Consensus 74 v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~ 153 (339)
-.|.+..+.. .++.+....|+..+++.... ....... .....++|++.++.++.+-...+.|..+++
T Consensus 79 ~~C~~~~~~~-----~l~~~~~~~I~~i~~~~~~~--~~~~~~~------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~ 145 (386)
T 3v65_B 79 RSCKALGPEP-----VLLFANRIDIRQVLPHRSEY--TLLLNNL------ENAIALDFHHRRELVFWSDVTLDRILRANL 145 (386)
T ss_dssp SCEEECSSCC-----EEEEECBSCEEEECTTSCCC--EEEECSC------SCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CeECCccccc-----eeEeecCccceeeccCCCcE--EEEecCC------CccEEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 3455544433 34444334888888877652 2223222 467899999745555556566789999998
Q ss_pred CCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307 154 DREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231 (339)
Q Consensus 154 ~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 231 (339)
........+.........+++. .++++++-...+.|.+.++........ ... .-.....++++|..+.++.+-..
T Consensus 146 ~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l-~~~--~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 146 NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-LWQ--SLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp TSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE-ECS--SCSCEEEEEEETTTTEEEEEECS
T ss_pred CCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe-ecC--CCCCCcEEEEEcCCCeEEEeccC
Confidence 7665333333222344567776 456666666778898888876543222 222 23567899999844444444333
Q ss_pred C-CCeEEEEecCCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 232 D-SNKVVVLDIRFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 232 d-~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
. +. |..+++.. .....+. ..-...+.++|+|++.++.++-+..+.|..+++....
T Consensus 223 ~~~~-I~r~~~dG--~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (386)
T 3v65_B 223 NTPR-IEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 279 (386)
T ss_dssp SSCE-EEEEETTS--CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS
T ss_pred CCCE-EEEEeCCC--CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe
Confidence 3 34 88888764 2233332 2234578999998775455555566788888876544
No 244
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=3.7e-07 Score=83.50 Aligned_cols=227 Identities=12% Similarity=0.057 Sum_probs=134.7
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEEeecC-CCccCCCCEE-EEEEcCCCCCEEEEEeC------CCeEEEEECCCCeee
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSLLNSN-KTSEFSSAIT-SFDWAGFDTRRVATCSV------DTTCVIWDIDREILE 159 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~i~-~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~ 159 (339)
.+++...+ .|..+|..+++ .+-.+... ..... ..+. ..... + ..++.++. ++.|+.+|.++++.+
T Consensus 130 ~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~-~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 130 KVYVGAWDGRLIALDAATGK--EVWHQNTFEGQKGS-LTITGAPRVF--K-GKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp EEEEECTTSEEEEEETTTCC--EEEEEETTTTCCSS-CBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EEEEEcCCCEEEEEECCCCC--EEeeecCCcCcCcC-cccccCcEEE--C-CEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 45555545 99999999987 44444433 10000 0111 11111 3 34454443 799999999999987
Q ss_pred eeeeccCCc--------------------------------eeEEEec-CCcEEEEEeCCC-------------------
Q 040307 160 TQLVAHDRE--------------------------------VYDISWG-GFNVFASVSGDC------------------- 187 (339)
Q Consensus 160 ~~~~~~~~~--------------------------------v~~~~~~-~~~~l~~~~~d~------------------- 187 (339)
..+...... ...++++ .+++++.+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 766432111 1245666 567777776653
Q ss_pred cEEEEECCCCcceeeEEeCCCCC-------CCeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCCCceEEEecCC--
Q 040307 188 SVRVFDLRDKERSTIIYENPVQD-------CPLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE-- 255 (339)
Q Consensus 188 ~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-- 255 (339)
.|..+|.++++..=..... .+. ....-+.... +| ..++.++.++. ++++|.++ ++++.......
T Consensus 284 sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~-l~~lD~~t-G~~l~~~~~~~~~ 359 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGF-FFVLDRTN-GKFISAKNFVPVN 359 (677)
T ss_dssp EEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTT-CCEEEEEESSCCS
T ss_pred EEEEEECCCCCEEEEEecC-CCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCE-EEEEECCC-CCEeccccccccC
Confidence 4999999988744333222 111 1222233333 55 67888888888 99999987 55555443211
Q ss_pred ---------CCe------------------------eEEEeccCCCCeEEEEeCC-------------------------
Q 040307 256 ---------GSV------------------------NGISWAPLYGRRLCSVADD------------------------- 277 (339)
Q Consensus 256 ---------~~v------------------------~~~~~~p~~~~~l~~~~~d------------------------- 277 (339)
..+ ..++++|+.. ++++...+
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeeccccccccccccccccccc
Confidence 001 2578899874 66665432
Q ss_pred ------------------CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEeC
Q 040307 278 ------------------SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV 339 (339)
Q Consensus 278 ------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~v 339 (339)
|.|..||+.+++ ..-...+..++....+...+..++.++.|+.+++|++
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~-------------~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQK-------------AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTE-------------EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCc-------------EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 567778877766 3333334444555556667767778889999999874
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.91 E-value=1.1e-06 Score=68.49 Aligned_cols=197 Identities=9% Similarity=0.034 Sum_probs=122.1
Q ss_pred CCCceeeeeeccCC--eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCC
Q 040307 6 EKKPGVHTYMAQWP--ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSE 83 (339)
Q Consensus 6 ~~~~~~~~~~~~~~--v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 83 (339)
.+.+.+.+|.|+.. ...+.|+++ .-+..+|.. ..+.|+. ++..+++... .. .-..........+.+
T Consensus 7 ~~~~v~~~~phd~~~ftqGL~~~~~---~LyestG~~---g~S~v~~--vD~~tgkv~~--~~--~l~~~~fgeGi~~~~ 74 (243)
T 3mbr_X 7 QGYRVVKRYPHDTTAFTEGLFYLRG---HLYESTGET---GRSSVRK--VDLETGRILQ--RA--EVPPPYFGAGIVAWR 74 (243)
T ss_dssp CCEEEEEEEECCTTCCEEEEEEETT---EEEEEECCT---TSCEEEE--EETTTCCEEE--EE--ECCTTCCEEEEEEET
T ss_pred cceEEEEEcCCCCccccccEEEECC---EEEEECCCC---CCceEEE--EECCCCCEEE--EE--eCCCCcceeEEEEeC
Confidence 34567778888654 448888765 333333331 2358999 4555566554 22 223333333333334
Q ss_pred CCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 84 ETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 84 ~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
. ++.+... + .+.+||.++.+ .+.++.... . =..+++ +++.|+.+..++.|.++|..+.+.+..
T Consensus 75 ~----~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~~-----~-Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~ 139 (243)
T 3mbr_X 75 D----RLIQLTWRNHEGFVYDLATLT--PRARFRYPG-----E-GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGS 139 (243)
T ss_dssp T----EEEEEESSSSEEEEEETTTTE--EEEEEECSS-----C-CCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred C----EEEEEEeeCCEEEEEECCcCc--EEEEEeCCC-----C-ceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence 2 4555553 3 99999998887 666666432 1 235554 456666666789999999999887777
Q ss_pred eeccC-----CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC----------CCCCCeEEEEEecCCCCeE
Q 040307 162 LVAHD-----REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP----------VQDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 162 ~~~~~-----~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~~l 226 (339)
+.-.. ..++.+.|.++.+++..-.+..|.+.|.++++....+.... ....-.+.|+++|..++++
T Consensus 140 I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 140 IKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp EECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred EEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 65321 34567787777777776678899999999998655543220 1223568999999444444
Q ss_pred EEE
Q 040307 227 ATV 229 (339)
Q Consensus 227 ~~~ 229 (339)
++|
T Consensus 220 VTG 222 (243)
T 3mbr_X 220 VTG 222 (243)
T ss_dssp EEE
T ss_pred EEC
Confidence 443
No 246
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.91 E-value=2.3e-06 Score=72.53 Aligned_cols=227 Identities=9% Similarity=0.008 Sum_probs=127.5
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC--------CCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEe
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH--------PYTPTNIAFFPSEETLNPDIVATSGD-SLRLWE 102 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--------~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~ 102 (339)
+..+.+++ .++.|..++. .+++..- ...... ...+.+.-...++ .+++...+ .|..+|
T Consensus 53 ~~~v~~~~----~~g~v~a~d~--~tG~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~~~~g~l~a~d 119 (376)
T 3q7m_A 53 DNVVYAAD----RAGLVKALNA--DDGKEIW--SVSLAEKDGWFSKEPALLSGGVTVSGG-----HVYIGSEKAQVYALN 119 (376)
T ss_dssp TTEEEEEC----TTSEEEEEET--TTCCEEE--EEECCC---CCSCCCCCEEEEEEEETT-----EEEEEETTSEEEEEE
T ss_pred CCEEEEEc----CCCeEEEEEc--cCCceee--eecCccccccccccCcccccCceEeCC-----EEEEEcCCCEEEEEE
Confidence 44666666 5788888554 4444332 111111 2223222222344 56665555 899999
Q ss_pred ecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCce-----eEEEecCC
Q 040307 103 IHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREV-----YDISWGGF 177 (339)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~ 177 (339)
.++++ ......... ........ .+..++.++.++.|..+|.++++.+..+....... ...... +
T Consensus 120 ~~tG~--~~W~~~~~~-----~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~ 188 (376)
T 3q7m_A 120 TSDGT--VAWQTKVAG-----EALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F 188 (376)
T ss_dssp TTTCC--EEEEEECSS-----CCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred CCCCC--EEEEEeCCC-----ceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence 99887 333333321 11111122 23577788889999999999998777765332111 111222 4
Q ss_pred cEEEEEeCCCcEEEEECCCCcceeeEEeCCC-CCCCeEE---EEEec-CCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 178 NVFASVSGDCSVRVFDLRDKERSTIIYENPV-QDCPLLR---LEWNK-ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 178 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~---~~~~p-~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
..++.+..++.+..+|..+++..-....... ....+.. +.-.| ..+..+++++.++. +..+|.++ ++.+....
T Consensus 189 ~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~t-G~~~w~~~ 266 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRS-GQIMWKRE 266 (376)
T ss_dssp TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTT-CCEEEEEC
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCC-CcEEeecc
Confidence 5677788899999999988874333221100 0000000 10111 02456777777888 99999987 44444443
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
. .....+.. ++ ..++.++.++.|..+|..+++
T Consensus 267 ~--~~~~~~~~--~~-~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 267 L--GSVNDFIV--DG-NRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp C--CCEEEEEE--ET-TEEEEEETTCCEEEEETTTCC
T ss_pred C--CCCCCceE--EC-CEEEEEcCCCeEEEEECCCCc
Confidence 2 23444443 34 377788889999999998877
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.90 E-value=3.3e-06 Score=69.47 Aligned_cols=233 Identities=10% Similarity=0.031 Sum_probs=134.8
Q ss_pred CCceeeeeeccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCC
Q 040307 7 KKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETL 86 (339)
Q Consensus 7 ~~~~~~~~~~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 86 (339)
+.+.+..+........++|+|+ ++++++-. .++.|.. ++.++.... . ......+..+++.+++
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~---g~lyv~d~----~~~~I~~--~d~~g~~~~---~--~~~~~~p~gia~~~dG--- 83 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPD---GTIFVTNH----EVGEIVS--ITPDGNQQI---H--ATVEGKVSGLAFTSNG--- 83 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTT---SCEEEEET----TTTEEEE--ECTTCCEEE---E--EECSSEEEEEEECTTS---
T ss_pred CceEeEeCCCCCCcceEEECCC---CCEEEEeC----CCCeEEE--ECCCCceEE---E--EeCCCCceeEEEcCCC---
Confidence 3455666655567889999999 88666654 5788877 554443222 1 2334578999999999
Q ss_pred CCCeEEEeC--Cc--EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eee
Q 040307 87 NPDIVATSG--DS--LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL-ETQ 161 (339)
Q Consensus 87 ~~~~la~~~--~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~ 161 (339)
+++++.. +. |..++..+++...+..+... .....++..+ ++..+++-..++.|+.+|...++. +..
T Consensus 84 --~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~------~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 84 --DLVATGWNADSIPVVSLVKSDGTVETLLTLPDA------IFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp --CEEEEEECTTSCEEEEEECTTSCEEEEEECTTC------SCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred --cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCc------cccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEE
Confidence 7776653 24 55566666653322222111 2234555443 444455544688999999875431 110
Q ss_pred ee---------ccCCceeEEEec-CC-cEEEEEeCCCcEEEEECCC-Ccc--eeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 162 LV---------AHDREVYDISWG-GF-NVFASVSGDCSVRVFDLRD-KER--STIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 162 ~~---------~~~~~v~~~~~~-~~-~~l~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
.. ..-.....+ + ++ .++++-...+.|..||+.. +.. ...+... .....+++++ +|++++
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~-dG~l~v 227 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDV-EGNLYG 227 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBT-TCCEEE
T ss_pred ECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECC-CCCEEE
Confidence 00 111233455 4 44 4555666678999999875 221 1111111 2456688887 787766
Q ss_pred EEeeCCCeEEEEecCCCCCceE--EEecCCCCeeEEEec---cCCCCeEEEEeC
Q 040307 228 TVGMDSNKVVVLDIRFPTNPVV--VLSKHEGSVNGISWA---PLYGRRLCSVAD 276 (339)
Q Consensus 228 ~~~~d~~~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~---p~~~~~l~~~~~ 276 (339)
+....+. |.++|.. ++... .+........+++|. |++. .|+.++.
T Consensus 228 a~~~~~~-V~~~~~~--G~~~~~~~~~~~~~~p~~~a~~g~~~d~~-~LyVt~~ 277 (306)
T 2p4o_A 228 ATHIYNS-VVRIAPD--RSTTIIAQAEQGVIGSTAVAFGQTEGDCT-AIYVVTN 277 (306)
T ss_dssp ECBTTCC-EEEECTT--CCEEEEECGGGTCTTEEEEEECCSTTTTT-EEEEEEC
T ss_pred EeCCCCe-EEEECCC--CCEEEEeecccccCCceEEEEecccCCCC-EEEEECC
Confidence 5555566 9999864 33322 222223568899998 8874 5554443
No 248
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.89 E-value=9.6e-06 Score=66.96 Aligned_cols=187 Identities=14% Similarity=0.048 Sum_probs=114.1
Q ss_pred CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC----Ceeeeeeec
Q 040307 89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDR----EILETQLVA 164 (339)
Q Consensus 89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~----~~~~~~~~~ 164 (339)
.+|.+....|+..+++..+. ...+... ....+++|++.++.++.+-...+.|..+++.. ......+..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~--~~~~~~~------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEY--TSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEEEECBSSEEEEETTSCCC--EEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred EEEEECCCeEEEEECCCcce--EehhcCC------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence 44555555899999988762 2233322 46789999974445555555678999999875 222222222
Q ss_pred cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEec
Q 040307 165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDI 241 (339)
Q Consensus 165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~ 241 (339)
.-.....+++. .++++++-...+.|.++|+....... +... .......++++|..+.++.+.... +. |..+++
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~ 150 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT-LFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL 150 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE-EEEC--TTCCEEEEEEETTTTEEEEEECSSSCE-EEEEET
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEE-EEEC--CCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcC
Confidence 22345778886 35566666678899999987654332 2322 234678999998444444443332 44 888887
Q ss_pred CCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 242 RFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 242 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.. .....+. ..-...+.++++|++.++.++-+..+.|..+|+....
T Consensus 151 dG--~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 151 NG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (316)
T ss_dssp TS--CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CC--CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc
Confidence 53 3333332 2234678999999875455555566789999987544
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.89 E-value=3.6e-07 Score=71.88 Aligned_cols=185 Identities=15% Similarity=0.173 Sum_probs=119.4
Q ss_pred ecCCCCc--eEEEEcCCCCCCCCCeEEEeCC----cEEEEeecCCcceeEEEeecCCCccCCCCE--EEEEEcCCCCCEE
Q 040307 68 FDHPYTP--TNIAFFPSEETLNPDIVATSGD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAI--TSFDWAGFDTRRV 139 (339)
Q Consensus 68 ~~~~~~v--~~l~~~~~~~~~~~~~la~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~l 139 (339)
+.|.... ..|.|+ ++ .++.+.+. .|+++|+++++ .+..+.... .. ..++.. .+.+.
T Consensus 37 ~phd~~~ftqGL~~~-~~-----~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~~------~~FgeGit~~--g~~ly 100 (262)
T 3nol_A 37 YPHDTKAFTEGFFYR-NG-----YFYESTGLNGRSSIRKVDIESGK--TLQQIELGK------RYFGEGISDW--KDKIV 100 (262)
T ss_dssp EECCTTCEEEEEEEE-TT-----EEEEEEEETTEEEEEEECTTTCC--EEEEEECCT------TCCEEEEEEE--TTEEE
T ss_pred ecCCCCcccceEEEE-CC-----EEEEECCCCCCceEEEEECCCCc--EEEEEecCC------ccceeEEEEe--CCEEE
Confidence 4565544 889998 56 67766652 89999999998 444443321 22 235553 44555
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCC--CCCCCeEEEE
Q 040307 140 ATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENP--VQDCPLLRLE 217 (339)
Q Consensus 140 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~ 217 (339)
+..-.++.+.++|.++.+.+.++.... .-..+++ ++..|+.+..++.|.++|..+.+....+.... ..-..++.+.
T Consensus 101 ~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEeeCCEEEEEECccCcEEEEEECCC-CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 556678999999999999988886432 2234554 45555555567889999999887555543321 0113455677
Q ss_pred EecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC------------CCCeeEEEeccCCCCeEEEE
Q 040307 218 WNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH------------EGSVNGISWAPLYGRRLCSV 274 (339)
Q Consensus 218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~~l~~~ 274 (339)
|. +|++.+..-.++. |.+.|.++ ++.+..+... ..-.+.|+|+|++.++++||
T Consensus 179 ~~--~G~lyan~w~~~~-I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 179 WV--DGEIFANVWQTNK-IVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EE--TTEEEEEETTSSE-EEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EE--CCEEEEEEccCCe-EEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 76 6665554444555 99999987 5555555431 13568999999985455554
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.88 E-value=2.4e-06 Score=66.60 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=121.3
Q ss_pred ecCC--CCceEEEEcCCCCCCCCCeEEEeCC----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEE
Q 040307 68 FDHP--YTPTNIAFFPSEETLNPDIVATSGD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVAT 141 (339)
Q Consensus 68 ~~~~--~~v~~l~~~~~~~~~~~~~la~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 141 (339)
++|. .-...|.|++ + .++.+.+. .|+.+|+++++ .......... .--..++.. ++.+...
T Consensus 15 ~phd~~~ftqGL~~~~-~-----~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~~~----~fgeGi~~~--~~~ly~l 80 (243)
T 3mbr_X 15 YPHDTTAFTEGLFYLR-G-----HLYESTGETGRSSVRKVDLETGR--ILQRAEVPPP----YFGAGIVAW--RDRLIQL 80 (243)
T ss_dssp EECCTTCCEEEEEEET-T-----EEEEEECCTTSCEEEEEETTTCC--EEEEEECCTT----CCEEEEEEE--TTEEEEE
T ss_pred cCCCCccccccEEEEC-C-----EEEEECCCCCCceEEEEECCCCC--EEEEEeCCCC----cceeEEEEe--CCEEEEE
Confidence 4554 4467999987 4 56666653 89999999998 4444432210 111244544 4566666
Q ss_pred EeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC--CCCCeEEEEEe
Q 040307 142 CSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPV--QDCPLLRLEWN 219 (339)
Q Consensus 142 ~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~ 219 (339)
...++.+.++|.++.+.+.++.... .-..+++. +..|+.+..++.|.++|..+.+....+..... .-..++.+.|.
T Consensus 81 tw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLTPRARFRYPG-EGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp ESSSSEEEEEETTTTEEEEEEECSS-CCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 6779999999999999998886433 33566654 55555556688999999999875554433211 11345667775
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC-------------CCCeeEEEeccCCCCeEEEEe
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH-------------EGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~l~~~~ 275 (339)
++++.+..-.+.. |.+.|.++ ++.+..+... ..-.+.|+++|++.++++||-
T Consensus 159 --~G~lyanvw~s~~-I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 --NGELLANVWLTSR-IARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp --TTEEEEEETTTTE-EEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred --CCEEEEEECCCCe-EEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6665555444555 99999987 5555554421 135689999999865555553
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=5.9e-07 Score=70.66 Aligned_cols=181 Identities=7% Similarity=-0.095 Sum_probs=121.6
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCcee--EEEecCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVY--DISWGGFNVFASVSGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 202 (339)
-...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ -. .... .+++.++.+++..-.++.+.+||..+.+....
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 34688887 5788888899999999999999987776 22 2333 36666566666777889999999999886666
Q ss_pred EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--CCC---CeeEEEeccCCCCeEEEEeCC
Q 040307 203 IYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--HEG---SVNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 203 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~~---~v~~~~~~p~~~~~l~~~~~d 277 (339)
+... ..-..+++ +++.|+.+..++. |.++|..+ .+.+.++.. +.. .++.+.|. +| ++.+..-.+
T Consensus 132 i~~~----~eGwGLt~---Dg~~L~vSdGs~~-l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s 200 (268)
T 3nok_A 132 TRYS----GEGWGLCY---WNGKLVRSDGGTM-LTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHS 200 (268)
T ss_dssp EECS----SCCCCEEE---ETTEEEEECSSSE-EEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTC
T ss_pred EeCC----CceeEEec---CCCEEEEECCCCE-EEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCC
Confidence 5443 12234443 4566666555665 99999887 455555543 222 45667777 66 466555567
Q ss_pred CcEEEEEecCCCCCCCCCCCCCcccceeee-----------cccceeEEEEecCCCCceEEEec
Q 040307 278 SRALIWEVVGPGYRSGNGGPSGDVEPELCY-----------QSMAEINVVRWSPLELDWIAIAF 330 (339)
Q Consensus 278 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~p~~~~l~~~~~ 330 (339)
+.|.+.|..+++ .+..+... ......+.|+|+|++..|+.++.
T Consensus 201 ~~I~vIDp~TG~----------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 201 SDVLEIDPATGT----------VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp SEEEEECTTTCB----------EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CeEEEEeCCCCc----------EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 899999998877 11111110 11235789999998877776663
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.86 E-value=2.9e-05 Score=72.60 Aligned_cols=278 Identities=10% Similarity=-0.015 Sum_probs=163.5
Q ss_pred eeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cE
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SL 98 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i 98 (339)
|.++...++ +.+.+ |+ .++.|..|+ ..+..+... ........|.++...+++ .+.+...+ .+
T Consensus 175 i~~i~~d~~---g~lwi-gt----~~~Gl~~~~--~~~~~~~~~--~~~~~~~~i~~i~~d~~g-----~lwigt~~~Gl 237 (795)
T 4a2l_A 175 IASTLYRQG---DQIYI-GT----STDGLYTYS--ITQKTFEKV--IPILGTKQIQAILQQSPT-----RIWVATEGAGL 237 (795)
T ss_dssp CEEEEEEET---TEEEE-EE----SSSCEEEEE--TTTCCEEEC--C----CCCEEEEEEEETT-----EEEEEEBSSCE
T ss_pred eEEEEECCC---CCEEE-EE----CCCCEEEEe--CCCCeEEEe--cCCCCCCeeEEEEEcCCC-----CEEEEECCCCe
Confidence 777777777 76554 55 345677744 333333321 011235678889888888 67666544 88
Q ss_pred EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-------ccCCceeE
Q 040307 99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-------AHDREVYD 171 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-------~~~~~v~~ 171 (339)
.+|+..+++......-......-....|.++...+ ++.+. .|+.+ -|.+||..+++...... -....|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 314 (795)
T 4a2l_A 238 FLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRS 314 (795)
T ss_dssp EEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEE
T ss_pred EEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEE
Confidence 89998776422211100000001125699998875 65544 44555 68899987765332211 12356888
Q ss_pred EEecCCcEEEEEeCCCcEEEEECCCCcceeeEEe---CCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 172 ISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYE---NPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 172 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
+...+...|..|+.++-|..|+............ .......|.++...+ ++. |-+|+.+++ |..||... .. .
T Consensus 315 i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~G-l~~~~~~~-~~-~ 389 (795)
T 4a2l_A 315 IFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGG-LNLYNPIT-QR-F 389 (795)
T ss_dssp EEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSC-EEEECTTT-CC-E
T ss_pred EEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCC-eEEEcCCC-Cc-E
Confidence 8888444456677777899998765542211110 011235688888875 554 556777777 99999765 22 2
Q ss_pred EEEe---------cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-----cccceeE
Q 040307 249 VVLS---------KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-----QSMAEIN 314 (339)
Q Consensus 249 ~~~~---------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~ 314 (339)
..+. .....|.++...+++ .+|..|+.++-|..||..... ..... .....|.
T Consensus 390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~-------------~~~~~~~~~~l~~~~v~ 455 (795)
T 4a2l_A 390 TSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQ-------------VENFNQRNSQLVNENVY 455 (795)
T ss_dssp EEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCC-------------EEEECTTTSCCSCSCEE
T ss_pred EEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCc-------------EEEeecCCCCcCCCeeE
Confidence 2222 123578899988887 447778877789999887655 11111 1245688
Q ss_pred EEEecCCCCceEEEecCCeEEEEe
Q 040307 315 VVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 315 ~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
++...+++..++++ . +.|.+|+
T Consensus 456 ~i~~d~~g~lwigt-~-~Gl~~~~ 477 (795)
T 4a2l_A 456 AILPDGEGNLWLGT-L-SALVRFN 477 (795)
T ss_dssp EEEECSSSCEEEEE-S-SCEEEEE
T ss_pred EEEECCCCCEEEEe-c-CceeEEe
Confidence 99988888744444 4 4455554
No 253
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.85 E-value=1.5e-06 Score=79.60 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=85.2
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEEeecC--CCccCCCCEE-EEEEcCCCCCEEEEEe-----CCCeEEEEECCCCeee
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSLLNSN--KTSEFSSAIT-SFDWAGFDTRRVATCS-----VDTTCVIWDIDREILE 159 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~i~-~~~~~~~~~~~l~~~~-----~d~~v~i~d~~~~~~~ 159 (339)
.+++.+.+ .|..+|..+++ .+-.+... .... ..+. .-.+. ++..++..+ .+|.|+.||.++++.+
T Consensus 123 ~v~v~~~dg~l~AlDa~TG~--~~W~~~~~~~~~~~--~~~~~sP~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 123 KVYVGVLDGRLEAIDAKTGQ--RAWSVDTRADHKRS--YTITGAPRVV--NGKVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp EEEEECTTSEEEEEETTTCC--EEEEEECCSCTTSC--CBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EEEEEccCCEEEEEECCCCC--EeeeecCcCCCCCC--ccccCCcEEE--CCEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 44444446 99999999987 44333321 1000 0110 00111 344433322 3789999999999987
Q ss_pred eeeeccC-------------------------------CceeEEEec-CCcEEEEEeCCCc-------------------
Q 040307 160 TQLVAHD-------------------------------REVYDISWG-GFNVFASVSGDCS------------------- 188 (339)
Q Consensus 160 ~~~~~~~-------------------------------~~v~~~~~~-~~~~l~~~~~d~~------------------- 188 (339)
..+.... .....++++ ..++++.+..++.
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 7664210 001246666 4678888877753
Q ss_pred EEEEECCCCcceeeEEeCCC------CCCCeEEEEEecCCCC---eEEEEeeCCCeEEEEecCCCCCce
Q 040307 189 VRVFDLRDKERSTIIYENPV------QDCPLLRLEWNKADPR---FMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 189 i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~---~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
|..+|.++++..=.....++ ...++....... +++ .++.++.+|. ++++|.++ ++++
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~-l~~lD~~t-G~~l 342 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGF-FYVIDRAT-GELL 342 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTT-CCEE
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCe-EEEEECCC-CCEe
Confidence 99999999884433322211 011222222222 444 7888888888 99999987 5544
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.84 E-value=6e-06 Score=64.97 Aligned_cols=189 Identities=8% Similarity=-0.022 Sum_probs=121.4
Q ss_pred ceeeeeeccCCe--eEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceE--EEEcCCCC
Q 040307 9 PGVHTYMAQWPI--STVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTN--IAFFPSEE 84 (339)
Q Consensus 9 ~~~~~~~~~~~v--~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~ 84 (339)
+.+.++.|.... ..+.|+. +.++.+.+ .+|.|++ ++.++++... .. . ...... +++. +.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~----~~Ly~stG----~~g~v~~--iD~~Tgkv~~--~~-l--~~~~FgeGit~~--g~ 106 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ----GHFFESTG----HQGTLRQ--LSLESAQPVW--ME-R--LGNIFAEGLASD--GE 106 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET----TEEEEEET----TTTEEEE--CCSSCSSCSE--EE-E--CTTCCEEEEEEC--SS
T ss_pred EEEEEEcCCCccccceEEEEC----CEEEEEcC----CCCEEEE--EECCCCcEEe--EE-C--CCCcceeEEEEe--CC
Confidence 456677776544 5777763 34444444 5788888 6676777665 22 2 233433 5554 42
Q ss_pred CCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307 85 TLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL 162 (339)
Q Consensus 85 ~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 162 (339)
++.+... + .+.+||.++.+ .+.++.... .-..+++ +++.|+.+..++.|.++|.++.+.+..+
T Consensus 107 ----~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~~~------eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I 171 (268)
T 3nok_A 107 ----RLYQLTWTEGLLFTWSGMPPQ--RERTTRYSG------EGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAV 171 (268)
T ss_dssp ----CEEEEESSSCEEEEEETTTTE--EEEEEECSS------CCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred ----EEEEEEccCCEEEEEECCcCc--EEEEEeCCC------ceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEE
Confidence 4555553 3 99999999887 666666422 2234554 5566766667899999999999877776
Q ss_pred ec--cC---CceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeC----------CCCCCCeEEEEEecCCCCeEE
Q 040307 163 VA--HD---REVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYEN----------PVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 163 ~~--~~---~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~~~~~p~~~~~l~ 227 (339)
.. +. ..++.+.|.++.+++..-.+..|.+.|.++++....+... .....-.+.|+|+|...++++
T Consensus 172 ~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 172 QVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp ECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred EeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 43 22 2456778887877766667889999999999865544321 112245789999995555555
Q ss_pred EE
Q 040307 228 TV 229 (339)
Q Consensus 228 ~~ 229 (339)
+|
T Consensus 252 TG 253 (268)
T 3nok_A 252 TG 253 (268)
T ss_dssp EE
T ss_pred eC
Confidence 54
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.82 E-value=2.8e-05 Score=63.83 Aligned_cols=227 Identities=9% Similarity=-0.012 Sum_probs=132.1
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--C
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--T 146 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~ 146 (339)
......++|++++ .++++.. + .|..|+.+.. ....+.. . .....+++.+ +++++++.... .
T Consensus 31 ~~~pegia~~~~g-----~lyv~d~~~~~I~~~d~~g~---~~~~~~~-~-----~~p~gia~~~-dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 31 NTFLENLASAPDG-----TIFVTNHEVGEIVSITPDGN---QQIHATV-E-----GKVSGLAFTS-NGDLVATGWNADSI 95 (306)
T ss_dssp TCCEEEEEECTTS-----CEEEEETTTTEEEEECTTCC---EEEEEEC-S-----SEEEEEEECT-TSCEEEEEECTTSC
T ss_pred CCCcceEEECCCC-----CEEEEeCCCCeEEEECCCCc---eEEEEeC-C-----CCceeEEEcC-CCcEEEEeccCCcc
Confidence 3567899999998 7877764 3 8888887653 2222222 1 4678999997 78866655432 2
Q ss_pred eEEEEECCCCeeeeeee-ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEE-------eCCCCCCCeEEEE
Q 040307 147 TCVIWDIDREILETQLV-AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIY-------ENPVQDCPLLRLE 217 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~~~ 217 (339)
.|..+|..+++...... ........++.. ++..+++-..++.|..+|........... .....-.....+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 47777877776432221 111223444444 44445554468889999987542111100 000111234555
Q ss_pred EecCCCCeEEEEeeCCCeEEEEecCCCCCc--eEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCC
Q 040307 218 WNKADPRFMATVGMDSNKVVVLDIRFPTNP--VVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG 295 (339)
Q Consensus 218 ~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 295 (339)
+| +++.|+++......|..||+...+.. ...+.. ......++++++| +++++....+.|.+++.. +.
T Consensus 175 -s~-dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~------ 243 (306)
T 2p4o_A 175 -KR-FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RS------ 243 (306)
T ss_dssp -EE-ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CC------
T ss_pred -Cc-CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCC-CEEEEeCCCCeEEEECCC-CC------
Confidence 76 66666665555445999998642211 122221 2346789999999 577776677899999864 33
Q ss_pred CCCCcccceeeec-ccceeEEEEec---CCCCceEEEe
Q 040307 296 GPSGDVEPELCYQ-SMAEINVVRWS---PLELDWIAIA 329 (339)
Q Consensus 296 ~~~~~~~~~~~~~-~~~~i~~~~~~---p~~~~l~~~~ 329 (339)
........ .....++++|. |++..|+.+.
T Consensus 244 -----~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 244 -----TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp -----EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred -----EEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 01111111 23568899998 8877766554
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.80 E-value=7.2e-06 Score=67.91 Aligned_cols=244 Identities=7% Similarity=-0.078 Sum_probs=142.1
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe----------------ecCCCCceEEEEcC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI----------------FDHPYTPTNIAFFP 81 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----------------~~~~~~v~~l~~~~ 81 (339)
....+++|.++ +.++.++. .++.|..| +..+..+....... ......+..+++.+
T Consensus 19 ~~p~~i~~d~~---g~~l~v~~----~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 19 YAPNSFTFDST---NKGFYTSV----QDGRVIKY--EGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp SCCCCEECCTT---CSSEEEEC----TTSEEEEE--CCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred CCceEEEEcCC---CCEEEEEc----CCCeEEEE--CCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 35778899999 88777777 58888885 44443332100000 00113578999997
Q ss_pred -CCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---------------
Q 040307 82 -SEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV--------------- 144 (339)
Q Consensus 82 -~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--------------- 144 (339)
++ .++++... .+..++..+++.+.+...... .. ......+++.|.++++.++-..
T Consensus 90 ~~g-----~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~--~~-~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 90 QNN-----QLYIVDCYYHLSVVGSEGGHATQLATSVDG--VP-FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp TTT-----EEEEEETTTEEEEECTTCEECEEEESEETT--EE-CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred CCC-----cEEEEECCCCEEEEeCCCCEEEEecccCCC--Cc-ccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 66 67776554 688888765432222111110 00 1346789998525665555322
Q ss_pred --CCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEE-eCCCcEEEEECCCCc--ceeeEEeCCCCCCCeEEEEE
Q 040307 145 --DTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASV-SGDCSVRVFDLRDKE--RSTIIYENPVQDCPLLRLEW 218 (339)
Q Consensus 145 --d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~ 218 (339)
++.|..+|..+++...... .......++++ +++.|..+ ...+.|..|++.... ....+... .+ ...+++
T Consensus 162 ~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~ 236 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKR 236 (322)
T ss_dssp CCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEE
T ss_pred CCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEE
Confidence 3678899987665432222 22345678999 66655444 566889999987532 11222222 23 778999
Q ss_pred ecCCCCeEEEEee----------CCCeEEEEecCCCCCceEEEecCC----CCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 219 NKADPRFMATVGM----------DSNKVVVLDIRFPTNPVVVLSKHE----GSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 219 ~p~~~~~l~~~~~----------d~~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
.+ +|++.++... .+. |..+|.. ++.+..+.... ..+..+++ .++ +++++...++.|..++
T Consensus 237 d~-~G~l~va~~~~~~~~~~~~~~~~-v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 237 NA-DGHFWVSSSEELDGNMHGRVDPK-GIKFDEF--GNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHGSVGILV 310 (322)
T ss_dssp CT-TSCEEEEEEEETTSSTTSCEEEE-EEEECTT--SCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCSEEEEEE
T ss_pred CC-CCCEEEEecCcccccccCCCccE-EEEECCC--CCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCCceEEEe
Confidence 97 7776666544 344 7777764 55566565432 34666766 355 4666666778899998
Q ss_pred ecCCC
Q 040307 285 VVGPG 289 (339)
Q Consensus 285 ~~~~~ 289 (339)
+....
T Consensus 311 ~~~~~ 315 (322)
T 2fp8_A 311 YDKKG 315 (322)
T ss_dssp C----
T ss_pred ccccc
Confidence 87554
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.80 E-value=1.3e-05 Score=66.36 Aligned_cols=238 Identities=13% Similarity=0.069 Sum_probs=132.2
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC------------CccCCCCEEEEEEcCCCCC
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK------------TSEFSSAITSFDWAGFDTR 137 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~ 137 (339)
....+++|.+++ .++.++. + .|..|+..+++........... .........++++.+ +..
T Consensus 19 ~~p~~i~~d~~g-----~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g 92 (322)
T 2fp8_A 19 YAPNSFTFDSTN-----KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNN 92 (322)
T ss_dssp SCCCCEECCTTC-----SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTT
T ss_pred CCceEEEEcCCC-----CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCC
Confidence 346788999998 7555554 4 8888888765422211100000 000013578899985 334
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeec-----cCCceeEEEecC--CcEEEEEeC-----------------CCcEEEEE
Q 040307 138 RVATCSVDTTCVIWDIDREILETQLVA-----HDREVYDISWGG--FNVFASVSG-----------------DCSVRVFD 193 (339)
Q Consensus 138 ~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~l~~~~~-----------------d~~i~i~d 193 (339)
.|..+...+.|..+|..+++. ..+.. .......+++.+ ++++++-.. ++.|..||
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 555555556688888775542 22211 112467788874 455554322 36688888
Q ss_pred CCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCCC-CceEEEecCCCCeeEEEeccCCCCeE
Q 040307 194 LRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPLYGRRL 271 (339)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l 271 (339)
..+++........ .....++++| +++.|+++.. .+. |..|++.... .....+....+ ...+++.++| ++.
T Consensus 172 ~~~~~~~~~~~~~----~~p~gia~~~-dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G-~l~ 243 (322)
T 2fp8_A 172 PSTKETTLLLKEL----HVPGGAEVSA-DSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG-HFW 243 (322)
T ss_dssp TTTTEEEEEEEEE----SCCCEEEECT-TSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEECSS-EEEEEECTTS-CEE
T ss_pred CCCCEEEEeccCC----ccCcceEECC-CCCEEEEEeCCCCe-EEEEECCCCcCCccceEEeCCC-CCCeEECCCC-CEE
Confidence 7666532222221 2446799998 7776666544 455 9999987421 11222222223 7889999998 455
Q ss_pred EEEeC----------CCcEEEEEecCCCCCCCCCCCCCcccceeeec-c----cceeEEEEecCCCCceEEEecCCeEEE
Q 040307 272 CSVAD----------DSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-S----MAEINVVRWSPLELDWIAIAFVNKLQL 336 (339)
Q Consensus 272 ~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~~~~~p~~~~l~~~~~d~~v~~ 336 (339)
++... .+.|..+|.. ++ ....+. . ...++.+++ .++..+++...++.|..
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~~-G~-------------~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~ 308 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDEF-GN-------------ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGI 308 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECTT-SC-------------EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEE
T ss_pred EEecCcccccccCCCccEEEEECCC-CC-------------EEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEE
Confidence 55443 3556666653 22 222111 1 234667776 45554445557788887
Q ss_pred EeC
Q 040307 337 LKV 339 (339)
Q Consensus 337 w~v 339 (339)
+++
T Consensus 309 ~~~ 311 (322)
T 2fp8_A 309 LVY 311 (322)
T ss_dssp EEC
T ss_pred Eec
Confidence 764
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.79 E-value=5e-05 Score=64.54 Aligned_cols=221 Identities=9% Similarity=-0.016 Sum_probs=129.4
Q ss_pred CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccC
Q 040307 45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEF 122 (339)
Q Consensus 45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~ 122 (339)
.+.|+. ++..+..... .......+..++|.+.+. .++.+-.. .|..++++... ....+....
T Consensus 95 ~~~I~~--i~~~~~~~~~----~~~~~~~~~gl~~d~~~~----~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~---- 158 (386)
T 3v65_B 95 RIDIRQ--VLPHRSEYTL----LLNNLENAIALDFHHRRE----LVFWSDVTLDRILRANLNGSN--VEEVVSTGL---- 158 (386)
T ss_dssp BSCEEE--ECTTSCCCEE----EECSCSCEEEEEEETTTT----EEEEEETTTTEEEEEETTSCC--EEEEECSSC----
T ss_pred Ccccee--eccCCCcEEE----EecCCCccEEEEEecCCC----eEEEEeCCCCcEEEEecCCCC--cEEEEeCCC----
Confidence 466777 4444444332 123345688999997652 55555443 88888887764 222222211
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C-CcEEEEEeCC-CcEEEEECCCCcc
Q 040307 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-G-FNVFASVSGD-CSVRVFDLRDKER 199 (339)
Q Consensus 123 ~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d-~~i~i~d~~~~~~ 199 (339)
.....+++.+..+.++++-...+.|.+.++........+...-.....+++. . +.++++-... +.|..+++.....
T Consensus 159 -~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 159 -ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp -SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred -CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 2345778876455666666667889998886443322333333456888888 3 4444444444 6788888876543
Q ss_pred eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307 200 STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSR 279 (339)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 279 (339)
... ... .-.....++++| ++..|+.+......|..+|+.. ......+........++++. .+ .++++-...+.
T Consensus 238 ~~~-~~~--~~~~PnGlavd~-~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~ 310 (386)
T 3v65_B 238 RII-ADT--HLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKS 310 (386)
T ss_dssp EEE-ECS--SCSCEEEEEEEG-GGTEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTE
T ss_pred EEE-EEC--CCCCeeeEEEeC-CCCEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCe
Confidence 332 222 234578999998 4455555444444499999864 22222333334456788883 33 46667667788
Q ss_pred EEEEEecCCC
Q 040307 280 ALIWEVVGPG 289 (339)
Q Consensus 280 v~iwd~~~~~ 289 (339)
|..++...+.
T Consensus 311 V~~~~~~~G~ 320 (386)
T 3v65_B 311 INSANKFTGK 320 (386)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 8888744443
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.73 E-value=6.7e-05 Score=62.81 Aligned_cols=239 Identities=10% Similarity=-0.027 Sum_probs=138.3
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~ 96 (339)
+...|.+..++ + +|+.+. .+.|+. ++.++..... .......+..++|.+... .++.+-. .
T Consensus 34 d~~~C~~~~~~---~-~ll~~~-----~~~I~~--i~~~g~~~~~----~~~~~~~~~~l~~d~~~~----~ly~~D~~~ 94 (349)
T 3v64_C 34 DRRSCKALGPE---P-VLLFAN-----RIDIRQ--VLPHRSEYTL----LLNNLENAIALDFHHRRE----LVFWSDVTL 94 (349)
T ss_dssp TSSCEEESSSC---C-EEEEEC-----BSCEEE--ECTTSCCEEE----EECSCSCEEEEEEETTTT----EEEEEETTT
T ss_pred CCCcccccccC---c-eeEeec-----ccceEE--EeCCCCeeEE----eecCCCceEEEEEecccc----EEEEEeccC
Confidence 44556555554 4 344444 456766 4554444432 123344588999997662 5555544 3
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
.|..++++.... ...+.... .....+++.+.+++++++-...+.|.+.++........+...-.....++++
T Consensus 95 ~~I~r~~~~g~~~--~~~~~~~~-----~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavd 167 (349)
T 3v64_C 95 DRILRANLNGSNV--EEVVSTGL-----ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 167 (349)
T ss_dssp TEEEEEETTSCSC--EEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEE
T ss_pred CceEEEecCCCCc--eEEEeCCC-----CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEe
Confidence 888888877642 22222211 3446788876455666666667899999986543222233333456889998
Q ss_pred C--CcEEEEEeCC-CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 176 G--FNVFASVSGD-CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 176 ~--~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
+ +.++++-... +.|..+++......... .. .-.....++++| ++..|+.+......|..+|+.. ......+.
T Consensus 168 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~--~~~~PnGla~d~-~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~ 242 (349)
T 3v64_C 168 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-DT--HLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDG-SHRKAVIS 242 (349)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEESC-CS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-CSCEEEEC
T ss_pred cCcCeEEEeccCCCCEEEEEeCCCCCcEEEE-EC--CCCCcceEEEeC-CCCEEEEEECCCCEEEEEeCCC-CceEEEEe
Confidence 3 4455555445 77888888765432221 11 234678999998 4555555444444499999864 22222233
Q ss_pred cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.......++++. .+ .++++-...+.|..++...++
T Consensus 243 ~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 243 QGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence 334456788883 33 466666667778777744433
No 260
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.73 E-value=7e-05 Score=63.90 Aligned_cols=187 Identities=14% Similarity=0.041 Sum_probs=114.5
Q ss_pred CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----eeeeeeec
Q 040307 89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE----ILETQLVA 164 (339)
Q Consensus 89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----~~~~~~~~ 164 (339)
.++.+....|+..+++..... ..+.. . ..+..++|++.++.++.+-...+.|+.+++... .....+..
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~--~~~~~-~-----~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYT--SLIPN-L-----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCE--EEECS-C-----SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS
T ss_pred eeEEeccceeEEEccCCccee--Eeccc-c-----CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC
Confidence 344444458999998876532 22222 2 568899999744555555556788999998652 22222322
Q ss_pred cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEec
Q 040307 165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDI 241 (339)
Q Consensus 165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~ 241 (339)
.......+++. .++++++-...+.|.+.++........+. . .-.....++++|..+.++.+-.. .+. |...++
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~--~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~ 232 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E--NGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL 232 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-C--SSCCEEEEEEETTTTEEEEEECSSSCC-EEEEET
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-C--CCCCcceEEEecccCeEEEEeCCCCCE-EEEEeC
Confidence 33456778877 46666666677899999988765333332 2 23457899999844444444322 245 888887
Q ss_pred CCCCCceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 242 RFPTNPVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 242 ~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.. .....+ ...-...+.|+++|++.++.++-...+.|..+|+....
T Consensus 233 dG--~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 233 NG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp TS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred CC--CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 64 223333 32335678999999875444444556788888886654
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.72 E-value=4.6e-05 Score=60.22 Aligned_cols=200 Identities=12% Similarity=0.088 Sum_probs=126.3
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec-cCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCccee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA-HDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
..+..++|+|.++.++++...++.|...|.. ++.++.+.- -......|++. ++.++++.-.++.+.++++.......
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 6799999998445566678889999999997 777776632 12457788888 56655665567889999887655311
Q ss_pred --eEEeC----CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCC--CCCceEEEe-------cCCCCeeEEEeccC
Q 040307 202 --IIYEN----PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRF--PTNPVVVLS-------KHEGSVNGISWAPL 266 (339)
Q Consensus 202 --~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~--~~~~~~~~~-------~~~~~v~~~~~~p~ 266 (339)
..... .......-.++|+| .++.|.++..... ..+|.+.. ....+..+. .+...+.+++++|.
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p-~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNP-IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSS-EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCC-ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 11111 12345578999999 5555555555544 44554431 111222221 12345789999998
Q ss_pred CCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cc------cceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 267 YGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QS------MAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 267 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
...+++.......+.++|....- ....... +. -.....|+|.|+|. ++.++.-+.+..++
T Consensus 184 tg~lliLS~~s~~L~~~d~~g~~-----------~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVGEV-----------IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTCCE-----------EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred CCeEEEEECCCCeEEEEcCCCCE-----------EEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 76677777777888888866432 0111111 11 13578999999996 66678877666553
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.70 E-value=1.9e-05 Score=73.30 Aligned_cols=249 Identities=9% Similarity=-0.011 Sum_probs=129.1
Q ss_pred CeeEEEee-ecCCcccEEEEeeeccc-cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 19 PISTVAWS-VRHDRKSRLAVGSFLED-YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 19 ~v~~i~~s-p~~~~~~~la~g~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
.+...+|| || |++||.+....+ ....|++++++... +.... .+ ......+.|+||++ .++.+..+
T Consensus 175 ~~~~~~~S~PD---G~~lAy~~~~~G~~~~~l~v~dl~~g~-~~l~~-~~----~~~~~~~~WspDg~----~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPE---HDLVAFSVDMSGNEVYTIEFKRISDPS-QTIAD-KV----SGTNGEIVWGPDHT----SLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTT---TCEEEEEEESSSSSCEEEEEEETTCTT-CCCCC-CE----EEECSCCEECSSTT----EEEEEEEC
T ss_pred EEeeeEecCCC---CCEEEEEEeCCCCceEEEEEEECCCCC-EeCCc-cc----cCceeeEEEecCCC----EEEEEEEC
Confidence 57789999 99 999998773111 11247776554430 32210 11 11245789999993 34444322
Q ss_pred ------cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCe-ee--eee-e
Q 040307 97 ------SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV---DTTCVIWDIDREI-LE--TQL-V 163 (339)
Q Consensus 97 ------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~-~~--~~~-~ 163 (339)
.|.++++.+++......+.... ......+.|+| ++++|+..+. ...|.++|+.++. .. ..+ .
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~----~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHN----PLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCC----TTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCC----CceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence 5777777766422223332211 03356789998 8988877653 4468889987752 12 333 3
Q ss_pred ccCCceeEEEecCCcEE-EEEeCC--C--cEEEEECCCCcceee-EEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eE
Q 040307 164 AHDREVYDISWGGFNVF-ASVSGD--C--SVRVFDLRDKERSTI-IYENPVQDCPLLRLEWNKADPRFMATVGMDSN-KV 236 (339)
Q Consensus 164 ~~~~~v~~~~~~~~~~l-~~~~~d--~--~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i 236 (339)
.......++.|+.++.| +....+ + .|..+|+.+...... +... .....+..+.+. .+.++++...++. .|
T Consensus 317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 34456677776645444 444443 2 566677664321122 2221 111234455553 4455566666664 36
Q ss_pred EEEecC------CCCCceEEEecCC-CCeeEEEe----ccCCCCeEEEEeCC---CcEEEEEecCC
Q 040307 237 VVLDIR------FPTNPVVVLSKHE-GSVNGISW----APLYGRRLCSVADD---SRALIWEVVGP 288 (339)
Q Consensus 237 ~i~d~~------~~~~~~~~~~~~~-~~v~~~~~----~p~~~~~l~~~~~d---g~v~iwd~~~~ 288 (339)
.++|+. ..+.....+.... ..+..+.+ +++++.++++.+.. ..+..+|+..+
T Consensus 394 ~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 394 WTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp EEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred EEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 666751 2122134443211 22334433 34664565555533 34555665543
No 263
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.67 E-value=6.2e-05 Score=62.07 Aligned_cols=187 Identities=9% Similarity=0.005 Sum_probs=114.0
Q ss_pred eEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee-eeeeccCC
Q 040307 90 IVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILE-TQLVAHDR 167 (339)
Q Consensus 90 ~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~ 167 (339)
+|+.+. ..|+..+++.........+.+. .....++|++.++.++.+-...+.|..+++...... ..+...-.
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~ 79 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGL------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL 79 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEE------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCC------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence 444444 4999999987631122222221 356689999745556666566789999998765321 22222223
Q ss_pred ceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee--CCCeEEEEecCC
Q 040307 168 EVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM--DSNKVVVLDIRF 243 (339)
Q Consensus 168 ~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d~~~i~i~d~~~ 243 (339)
....+++. .++++++-...+.|.++++........ ... .......++++|..+ .|+.... .+. |...++..
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-~~~--~~~~P~giavdp~~g-~ly~td~~~~~~-I~r~~~dG 154 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-FWQ--ELDQPRAIALDPSSG-FMYWTDWGEVPK-IERAGMDG 154 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECS--SCSSEEEEEEEGGGT-EEEEEECSSSCE-EEEEETTS
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE-EeC--CCCCccEEEEeCCCC-EEEEEecCCCCE-EEEEEcCC
Confidence 45677776 466666666778999999876543222 222 235678999998444 4444442 344 88887753
Q ss_pred CCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 244 PTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 244 ~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.....+. ..-...+.++++|++.++.++-+..+.|..+|+....
T Consensus 155 --~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~ 199 (318)
T 3sov_A 155 --SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 199 (318)
T ss_dssp --CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred --CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence 2233332 2234568999999775455555567789999887544
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=0.00019 Score=67.01 Aligned_cols=283 Identities=9% Similarity=-0.060 Sum_probs=155.8
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe----ecCCCCceEEEEcCCCCCCCCCeEEEe
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI----FDHPYTPTNIAFFPSEETLNPDIVATS 94 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~~~~la~~ 94 (339)
.|.++...++ +.+. +|+ .++.|..|+ .....+....... .-....|.++...+++ .+.+..
T Consensus 164 ~i~~i~~d~~---g~lw-igt----~~~Gl~~~~--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----~lwigt 228 (781)
T 3v9f_A 164 QTWTATEAED---GKLY-IGH----VEGGLSILS--LNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG-----NIWIGT 228 (781)
T ss_dssp CEEEEEEEET---TEEE-EEE----TTTEEEEEE--TTTTEEEEECC--------CCSSEEEEEECTTC-----CEEEEE
T ss_pred ceEEEEECCC---CCEE-EEe----cCCCeEEEc--CCCCceEeeecCCCCcccCCCCceeEEEEcCCC-----CEEEEe
Confidence 4666666666 6544 455 354676644 4443332200000 0113568899888888 676665
Q ss_pred CCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-----------
Q 040307 95 GDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV----------- 163 (339)
Q Consensus 95 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----------- 163 (339)
.+-+.+|+..+.+..................|.++...+ ++ .|..|+..+-|.++|..+.+......
T Consensus 229 ~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~ 306 (781)
T 3v9f_A 229 SKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDN 306 (781)
T ss_dssp TTEEEEEETTTTEEEC-----------CCCCEEEEEECT-TS-EEEEEESSSCEEEEETTCC---------CEEECBCSS
T ss_pred CCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCC
Confidence 558888988766532221111000000115789998874 54 45556665678889987654221110
Q ss_pred ---ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEe------CCCCCCCeEEEEEecCCCCeEEEEeeCCC
Q 040307 164 ---AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYE------NPVQDCPLLRLEWNKADPRFMATVGMDSN 234 (339)
Q Consensus 164 ---~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 234 (339)
.....|.++.......|-.|+.++-|..++............ .......|.++...+ ++. |.+|+.+++
T Consensus 307 ~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~G 384 (781)
T 3v9f_A 307 NYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGG 384 (781)
T ss_dssp TTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSC
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCc
Confidence 123568888887434456677677789999876553222111 111235688888864 444 556676777
Q ss_pred eEEEEecCCCCCceEEE----ecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee-ecc
Q 040307 235 KVVVLDIRFPTNPVVVL----SKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC-YQS 309 (339)
Q Consensus 235 ~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~ 309 (339)
|..||... .. ...+ ......|.++...+++ .|..|+.++.+..++..+.. ...... ...
T Consensus 385 -l~~~~~~~-~~-~~~~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~-----------~~~~~~~~~~ 448 (781)
T 3v9f_A 385 -INVFENGK-RV-AIYNKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKK-----------FQIIELEKNE 448 (781)
T ss_dssp -EEEEETTE-EE-EECC-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCE-----------EEECCSTTTC
T ss_pred -EEEEECCC-Ce-EEEccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCc-----------EEEeccCCCC
Confidence 99999754 11 1111 1234578899988887 35557766778888776544 001100 112
Q ss_pred cceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 310 MAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 310 ~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
...|.++...+++..++ ++. +.|..|+
T Consensus 449 ~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~ 475 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWI-GTH-AGVFVID 475 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EET-TEEEEEE
T ss_pred CCeEEEEEECCCCCEEE-EEC-CceEEEe
Confidence 45688888888876444 444 4565554
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.62 E-value=6.8e-05 Score=59.24 Aligned_cols=198 Identities=7% Similarity=0.083 Sum_probs=119.1
Q ss_pred cCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 040307 69 DHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT 146 (339)
Q Consensus 69 ~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 146 (339)
+-...+..++|+|++. .++++..+ .|...|.. ++ ....+.-.. + ...-.+++.+ ++.++++.-.++
T Consensus 24 g~~~~lSGla~~~~~~----~L~aV~d~~~~I~~ld~~-g~--v~~~i~l~g---~-~D~EGIa~~~-~g~~~vs~E~~~ 91 (255)
T 3qqz_A 24 GITNNISSLTWSAQSN----TLFSTINKPAAIVEMTTN-GD--LIRTIPLDF---V-KDLETIEYIG-DNQFVISDERDY 91 (255)
T ss_dssp TCCSCEEEEEEETTTT----EEEEEEETTEEEEEEETT-CC--EEEEEECSS---C-SSEEEEEECS-TTEEEEEETTTT
T ss_pred CcccCcceeEEeCCCC----EEEEEECCCCeEEEEeCC-CC--EEEEEecCC---C-CChHHeEEeC-CCEEEEEECCCC
Confidence 4456799999999872 45554443 77777776 54 444432211 1 4677889986 777666655678
Q ss_pred eEEEEECCCCee---eeeee------ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCC---CcceeeEEe----CCCC
Q 040307 147 TCVIWDIDREIL---ETQLV------AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRD---KERSTIIYE----NPVQ 209 (339)
Q Consensus 147 ~v~i~d~~~~~~---~~~~~------~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~----~~~~ 209 (339)
.+.++++..... +.... ........++|+ .++.|.++.......+|.+.. ......... ....
T Consensus 92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 899998765432 12221 123456899999 455555555554555555542 111111111 1112
Q ss_pred CCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC---------CCeeEEEeccCCCCeEEEEeCCCcE
Q 040307 210 DCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE---------GSVNGISWAPLYGRRLCSVADDSRA 280 (339)
Q Consensus 210 ~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~~~~~dg~v 280 (339)
...+..++++|.++++++....... +..+|... +++..+.-.. ..--.|+|.|+| ++.++ ++-+.+
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~-L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~ 246 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRA-LQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRF 246 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTE-EEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCe-EEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceE
Confidence 3467899999977777777666665 99999763 4555444322 256799999999 44444 666655
Q ss_pred EEE
Q 040307 281 LIW 283 (339)
Q Consensus 281 ~iw 283 (339)
+.|
T Consensus 247 y~f 249 (255)
T 3qqz_A 247 YRF 249 (255)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=0.00025 Score=66.22 Aligned_cols=281 Identities=7% Similarity=-0.009 Sum_probs=155.4
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe----ecCCCCceEEEEcCCCCCCCCCeEEE
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI----FDHPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
..|.++...++ +. |-+|+ .+ .|.+|+ ..+..+....... .-....|.++...+++ .+.+.
T Consensus 211 ~~i~~i~~d~~---g~-lwigt----~~-Gl~~~d--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----~lWig 274 (781)
T 3v9f_A 211 NDVRCIYKDTN---GN-IWIGT----SK-GLALFN--ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-----KLWIA 274 (781)
T ss_dssp SSEEEEEECTT---CC-EEEEE----TT-EEEEEE--TTTTEEEC-----------CCCCEEEEEECTTS-----EEEEE
T ss_pred CceeEEEEcCC---CC-EEEEe----CC-cHheEC--CCCCcEEEEEcCCCccccccCceEEEEEECCCC-----CEEEE
Confidence 35777766666 65 44556 23 677744 4444433210000 0124568999988888 66665
Q ss_pred eC-CcEEEEeecCCcceeEEE-------eecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee--
Q 040307 94 SG-DSLRLWEIHDDRTELKSL-------LNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-- 163 (339)
Q Consensus 94 ~~-~~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-- 163 (339)
.. +-|.+++..+.+...... .......-....|.++...+ ++. |-.|+.++-|..++..+.... .+.
T Consensus 275 t~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~ 351 (781)
T 3v9f_A 275 TELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFH-TWSYS 351 (781)
T ss_dssp ESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCE-EEC--
T ss_pred eCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcce-eeccC
Confidence 55 488888887765322211 00000011125789998875 554 556777788888988655422 221
Q ss_pred --------ccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCe
Q 040307 164 --------AHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNK 235 (339)
Q Consensus 164 --------~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~ 235 (339)
.....|.++...+...|..|+.++-|..||..+................|.++...+ ++. |.+|+.+++
T Consensus 352 ~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~G- 428 (781)
T 3v9f_A 352 PTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGN- 428 (781)
T ss_dssp --CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEE-
T ss_pred ccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCC-
Confidence 123568888887434455666666789999865432111110111335688888764 555 445666666
Q ss_pred EEEEecCCCCCceEEEe---cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee----c
Q 040307 236 VVVLDIRFPTNPVVVLS---KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY----Q 308 (339)
Q Consensus 236 i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~ 308 (339)
+..+|... + ....+. .....|.++...+++ .|..|+. +-|..||..... ....... .
T Consensus 429 l~~~~~~~-~-~~~~~~~~~~~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~-----------~~~~~~~~~~~~ 492 (781)
T 3v9f_A 429 ISYYNTRL-K-KFQIIELEKNELLDVRVFYEDKNK--KIWIGTH-AGVFVIDLASKK-----------VIHHYDTSNSQL 492 (781)
T ss_dssp EEEECSSS-C-EEEECCSTTTCCCCEEEEEECTTS--EEEEEET-TEEEEEESSSSS-----------CCEEECTTTSSC
T ss_pred EEEEcCCC-C-cEEEeccCCCCCCeEEEEEECCCC--CEEEEEC-CceEEEeCCCCe-----------EEecccCccccc
Confidence 99998764 2 223332 134578999988887 3555555 568888876654 0111100 0
Q ss_pred ccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307 309 SMAEINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 309 ~~~~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
....|.++...++|..++ ++.++.|..|
T Consensus 493 ~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~ 520 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWI-GTFGGGVGIY 520 (781)
T ss_dssp SCSCEEEEEECTTCCEEE-EESSSCEEEE
T ss_pred ccceeEEEEEcCCCCEEE-EEcCCCEEEE
Confidence 135688999888887444 4443334444
No 267
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=3.4e-05 Score=70.50 Aligned_cols=156 Identities=7% Similarity=-0.032 Sum_probs=97.8
Q ss_pred EEEEcCCCCCEEEEEeCCC-------------------eEEEEECCCCeeeeeeec--cC-------CceeEEEec-CCc
Q 040307 128 SFDWAGFDTRRVATCSVDT-------------------TCVIWDIDREILETQLVA--HD-------REVYDISWG-GFN 178 (339)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~-------------------~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~-~~~ 178 (339)
.+++.| +..+++.++.++ .|..+|.++++.+..++. |. .+.....+. +++
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 467776 667888877665 499999999998877753 21 222222222 343
Q ss_pred ---EEEEEeCCCcEEEEECCCCcceeeEEeCC---------CCCC------------------------CeEEEEEecCC
Q 040307 179 ---VFASVSGDCSVRVFDLRDKERSTIIYENP---------VQDC------------------------PLLRLEWNKAD 222 (339)
Q Consensus 179 ---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~------------------------~v~~~~~~p~~ 222 (339)
.++.++.+|.++++|..+++........+ .... .-..++++| +
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~ 391 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-G 391 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-C
Confidence 68899999999999999987542211110 0000 011267777 3
Q ss_pred CCeEEEEe------------------------------------eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccC
Q 040307 223 PRFMATVG------------------------------------MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPL 266 (339)
Q Consensus 223 ~~~l~~~~------------------------------------~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~ 266 (339)
..++++.. .++. |..||+.+ ++.+-+...+ .......+...
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~-l~A~D~~t-G~~~W~~~~~-~~~~~~~~~t~ 468 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA-LLAWDPVK-QKAAWKVPYP-THWNGGTLSTA 468 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE-EEEEETTT-TEEEEEEEES-SSCCCCEEEET
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce-EEEEeCCC-CcEEEEccCC-CCCcCceeEeC
Confidence 34443321 1244 88999987 5555555443 23344445556
Q ss_pred CCCeEEEEeCCCcEEEEEecCCC
Q 040307 267 YGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 267 ~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+ .+++.++.|+.++.||.++++
T Consensus 469 g-g~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 469 G-NLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp T-TEEEEECTTSEEEEEETTTCC
T ss_pred C-CEEEEECCcccchhhhhhcCh
Confidence 6 488889999999999999887
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.55 E-value=2.3e-05 Score=72.74 Aligned_cols=194 Identities=10% Similarity=0.017 Sum_probs=110.4
Q ss_pred CEEEEEEc-CCCCCEEEEEeC-C----CeEEEEECCCC-eeee-eeeccCCceeEEEec-CCcEEEEEeCC-----CcEE
Q 040307 125 AITSFDWA-GFDTRRVATCSV-D----TTCVIWDIDRE-ILET-QLVAHDREVYDISWG-GFNVFASVSGD-----CSVR 190 (339)
Q Consensus 125 ~i~~~~~~-~~~~~~l~~~~~-d----~~v~i~d~~~~-~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d-----~~i~ 190 (339)
.+...+|| | ++++||.+.. + ..|+++|+.++ +.+. .+. .....+.|+ +++.|+....+ ..|+
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 57789999 8 9998886543 2 25999999988 6322 121 123468899 67777766654 3588
Q ss_pred EEECCCCcce-eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--CeEEEEecCCCCCce--EEEe-cCCCCeeEEEec
Q 040307 191 VFDLRDKERS-TIIYENPVQDCPLLRLEWNKADPRFMATVGMDS--NKVVVLDIRFPTNPV--VVLS-KHEGSVNGISWA 264 (339)
Q Consensus 191 i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~~i~i~d~~~~~~~~--~~~~-~~~~~v~~~~~~ 264 (339)
++++.+.... ..++... .......+.|+| ++++|+..+..+ ..|+++|+....... ..+. .......++.|+
T Consensus 251 ~~~lgt~~~~~~lv~~~~-~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEH-NPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp EEETTSCGGGCEEEEECC-CTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred EEECCCCchhcEEEEecC-CCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence 8888776532 3334332 223567889998 888877665432 258888987642222 3333 233445556554
Q ss_pred cCCCCeEEEEeCC--CcEEEEEecCCCCCCCCCCCCCccccee-eeccc--ceeEEEEecCCCCceE-EEecCCeEEEE
Q 040307 265 PLYGRRLCSVADD--SRALIWEVVGPGYRSGNGGPSGDVEPEL-CYQSM--AEINVVRWSPLELDWI-AIAFVNKLQLL 337 (339)
Q Consensus 265 p~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~i~~~~~~p~~~~l~-~~~~d~~v~~w 337 (339)
. ++.+++....+ +..+||.+.... + ..... +..+. ..+..+.+. +..++ +...++..++|
T Consensus 329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~--~--------~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 329 G-TSHLVILTNEGGAVNHKLLIAPRGQ--P--------SDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp T-TTEEEEEECTTTCTTCEEEEEETTS--T--------TCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred e-CCEEEEEeCCCCCCCcEEEEEcCCC--c--------ccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 4 43455555544 444555444321 0 00112 22222 245666665 44454 45667765555
No 269
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.54 E-value=8.4e-05 Score=66.53 Aligned_cols=137 Identities=7% Similarity=-0.059 Sum_probs=83.5
Q ss_pred eEEEEECCCCeeeeeeeccC----------CceeEEEec-CC---cEEEEEeCCCcEEEEECCCCcceeeEEeCCC----
Q 040307 147 TCVIWDIDREILETQLVAHD----------REVYDISWG-GF---NVFASVSGDCSVRVFDLRDKERSTIIYENPV---- 208 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~~~----------~~v~~~~~~-~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---- 208 (339)
.|..+|.++++.+..++... .++. +... ++ ..++.++.+|.++++|..+++..-.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 69999999999877765321 1111 1111 34 3677888999999999998875433221110
Q ss_pred ------CCCCe--------------------------EEEEEecCCCCeEEEEee-------------------------
Q 040307 209 ------QDCPL--------------------------LRLEWNKADPRFMATVGM------------------------- 231 (339)
Q Consensus 209 ------~~~~v--------------------------~~~~~~p~~~~~l~~~~~------------------------- 231 (339)
...++ ..++++| +..++++...
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCccccccce
Confidence 00011 2467887 4455555432
Q ss_pred ------------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 232 ------------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 232 ------------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
++. |..||..+ ++.+.++... ..+.+..+...+ .+++.++.||.|+.||.++++
T Consensus 431 ~~~~~~~~~~~~~g~-l~a~D~~t-G~~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQ-IRAFDLTT-GKAKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEECTTSTTSCCCEE-EEEECTTT-CCEEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred eccCccccCCCCCCe-EEEEECCC-CCEEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCC
Confidence 244 88999887 5555555432 233333333344 377779999999999999888
No 270
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.54 E-value=1.2e-05 Score=70.64 Aligned_cols=196 Identities=9% Similarity=-0.067 Sum_probs=124.9
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCeeeeeeec-cCCceeEEEec---CCcEEEEEe------------------CCCcEEE
Q 040307 135 DTRRVATCSV-DTTCVIWDIDREILETQLVA-HDREVYDISWG---GFNVFASVS------------------GDCSVRV 191 (339)
Q Consensus 135 ~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~---~~~~l~~~~------------------~d~~i~i 191 (339)
|++++..... ++.|.+.|+.+.+....+.- .......+++. ++.++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 5566665554 66799999999997774431 23457788873 477777774 2457899
Q ss_pred EECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC--------------------------------------
Q 040307 192 FDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS-------------------------------------- 233 (339)
Q Consensus 192 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-------------------------------------- 233 (339)
.|..+.+....+... +....++.+| +++++++.+.+.
T Consensus 180 ID~~t~~v~~qI~Vg----g~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 180 VDADKWEVAWQVLVS----GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EETTTTEEEEEEEES----SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EECCCCeEEEEEEeC----CCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 999987755554443 1345677888 788888777553
Q ss_pred CeEEEEecCC--CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccc
Q 040307 234 NKVVVLDIRF--PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA 311 (339)
Q Consensus 234 ~~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (339)
. |.+.|.++ ....+..+.. .....++.++|||..+++++..+..|.++|+...+. ..+..-...........-..
T Consensus 255 ~-V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~-~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 255 G-VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA-VFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp T-EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH-HHHSCCCGGGGEEECCBCCS
T ss_pred c-EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc-ccccccCcccceEEEcCCCC
Confidence 3 67777765 2222344443 345678999999954555555788999999996420 00000000000112223456
Q ss_pred eeEEEEecCCCCceE-EEecCCeEEEEeC
Q 040307 312 EINVVRWSPLELDWI-AIAFVNKLQLLKV 339 (339)
Q Consensus 312 ~i~~~~~~p~~~~l~-~~~~d~~v~~w~v 339 (339)
....++|+|+| ++. +.-.|+.|.+|++
T Consensus 332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp CEEEEEECTTS-EEEEEETTTTEEEEEEH
T ss_pred CcceEEECCCC-eEEEEEecCCcEEEEEh
Confidence 68899999999 555 4558999999974
No 271
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.52 E-value=4e-05 Score=70.01 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=84.4
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEE-EEEEcCCCCCEEEEEeC------CCeEEEEECCCCeeee
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAIT-SFDWAGFDTRRVATCSV------DTTCVIWDIDREILET 160 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~ 160 (339)
.+++.+.+ .|..+|..+++ .+-.+........ ..+. .-... ++ .++.+.. +|.|..+|.++++.+.
T Consensus 119 ~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~-~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGK--AIWSQQTTDPAKP-YSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp EEEEECTTSEEEEEETTTCC--EEEEEECSCTTSS-CBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCC--EeeeeccCCCCCc-ceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 45555445 99999999987 4433332110000 0011 00111 33 4444433 5899999999999877
Q ss_pred eeeccC---C----------------------------ceeEEEec-CCcEEEEEeCCC-------------------cE
Q 040307 161 QLVAHD---R----------------------------EVYDISWG-GFNVFASVSGDC-------------------SV 189 (339)
Q Consensus 161 ~~~~~~---~----------------------------~v~~~~~~-~~~~l~~~~~d~-------------------~i 189 (339)
.+.... . ....+++. ..++++.+..++ .|
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 664210 0 01135666 466777777665 38
Q ss_pred EEEECCCCcceeeEEeCCCCC-------CCeEEEEEecCCCC---eEEEEeeCCCeEEEEecCCCCCce
Q 040307 190 RVFDLRDKERSTIIYENPVQD-------CPLLRLEWNKADPR---FMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 190 ~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~---~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
..+|.++++..=..... .+. .+.....+.. +++ .++.++.++. ++++|..+ ++++
T Consensus 273 ~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~-l~~lD~~t-G~~l 337 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGF-FYVLDRTN-GKLI 337 (668)
T ss_dssp EEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSE-EEEEETTT-CCEE
T ss_pred EEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCE-EEEEECCC-CCEe
Confidence 99999998844333222 111 2222223322 454 6788888888 99999887 5544
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.52 E-value=0.0002 Score=61.77 Aligned_cols=247 Identities=8% Similarity=0.039 Sum_probs=132.2
Q ss_pred CceEEEEcCC---CCCCCCCeEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---
Q 040307 73 TPTNIAFFPS---EETLNPDIVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--- 145 (339)
Q Consensus 73 ~v~~l~~~~~---~~~~~~~~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--- 145 (339)
....|+|.|+ + .++++-. ..|+.++..+++ +..+.... .....+++++ +++++++....
T Consensus 140 ~P~gvavd~~s~~g-----~Lyv~D~~~~I~~id~~~g~---v~~~~~~~-----~~P~giavd~-dG~lyVad~~~~~~ 205 (433)
T 4hw6_A 140 NIWRMMFDPNSNYD-----DLYWVGQRDAFRHVDFVNQY---VDIKTTNI-----GQCADVNFTL-NGDMVVVDDQSSDT 205 (433)
T ss_dssp CCCEEEECTTTTTC-----EEEEECBTSCEEEEETTTTE---EEEECCCC-----SCEEEEEECT-TCCEEEEECCSCTT
T ss_pred CCceEEEccccCCC-----EEEEEeCCCCEEEEECCCCE---EEEeecCC-----CCccEEEECC-CCCEEEEcCCCCcc
Confidence 4678999985 4 5666655 488888887764 22232222 5688999998 88854443321
Q ss_pred C-eEEEEECCCCee-eeeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307 146 T-TCVIWDIDREIL-ETQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 146 ~-~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
. .+...+...+.. ...+. .......+++++ ++++++-..++.|+.+|..++.....+.... .......++|+|
T Consensus 206 ~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dp- 282 (433)
T 4hw6_A 206 NTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHP- 282 (433)
T ss_dssp SEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECT-
T ss_pred cceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeC-
Confidence 1 233333322111 01221 223345677773 5555555567789999988665422332221 122345799998
Q ss_pred CCCeEEEEeeCCCeEEEEecCCCCCc---eEEEecC---------------CCCeeEEEe---------ccCCCCeEEEE
Q 040307 222 DPRFMATVGMDSNKVVVLDIRFPTNP---VVVLSKH---------------EGSVNGISW---------APLYGRRLCSV 274 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~~~~~---~~~~~~~---------------~~~v~~~~~---------~p~~~~~l~~~ 274 (339)
+++.|+.+......|+.++....... ...+.+. -.....+++ .+++ .++++-
T Consensus 283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD 361 (433)
T 4hw6_A 283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCD 361 (433)
T ss_dssp TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEE
Confidence 77766666555444999886532111 1222221 123567898 6666 466666
Q ss_pred eCCCcEEEEEecCCCCCCCCCCCC----Ccccc-eeeecccceeEEEEec-CCCCceEEEecCCeEEEEe
Q 040307 275 ADDSRALIWEVVGPGYRSGNGGPS----GDVEP-ELCYQSMAEINVVRWS-PLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 275 ~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~i~~~~~~-p~~~~l~~~~~d~~v~~w~ 338 (339)
...++|+.++.. +......+... +...- ......-.....|+++ +++..+++=..++.|+.+.
T Consensus 362 ~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 362 RDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp TTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 667788888742 22000000000 00000 0000011246789999 6666555666778888765
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=0.00024 Score=61.22 Aligned_cols=153 Identities=10% Similarity=0.167 Sum_probs=91.1
Q ss_pred CceEEEEcCC-CCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-CC---
Q 040307 73 TPTNIAFFPS-EETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-DT--- 146 (339)
Q Consensus 73 ~v~~l~~~~~-~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--- 146 (339)
....|+++|+ +. .++++-.. .|+.++++... +..+.... .....++|++ +++.|+.+.. ++
T Consensus 138 ~P~~lavdp~~~g----~Lyv~d~~~~I~~id~~~~~---v~~~~~~~-----~~P~~ia~d~-~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKNHN----HLYLVGEQHPTRLIDFEKEY---VSTVYSGL-----SKVRTICWTH-EADSMIITNDQNNNDR 204 (430)
T ss_dssp CCCEEEEETTEEE----EEEEEEBTEEEEEEETTTTE---EEEEECCC-----SCEEEEEECT-TSSEEEEEECCSCTTS
T ss_pred CCCEEEECCCCCC----eEEEEeCCCcEEEEECCCCE---EEEEecCC-----CCcceEEEeC-CCCEEEEEeCCCCccc
Confidence 4578888873 31 55555553 88888887764 22222222 5678999998 8885555554 22
Q ss_pred -eEEEEECCCCeee--eeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecC
Q 040307 147 -TCVIWDIDREILE--TQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKA 221 (339)
Q Consensus 147 -~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 221 (339)
.+...+. .+... ..+.. ......+++++ +.++++-...+.|..+|......... .... .......++|+|
T Consensus 205 ~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~-~~~~-~~~~P~gia~~p- 279 (430)
T 3tc9_A 205 PNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQ-DSGWEFHIQFHP- 279 (430)
T ss_dssp EEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE-EECS-SSSCCEEEEECT-
T ss_pred ceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EEcC-CCCcceeEEEcC-
Confidence 3444443 33221 22322 23456778884 55555555678899999886653222 2221 124578999998
Q ss_pred CCCeEEEEeeCCCeEEEEecCC
Q 040307 222 DPRFMATVGMDSNKVVVLDIRF 243 (339)
Q Consensus 222 ~~~~l~~~~~d~~~i~i~d~~~ 243 (339)
++++|+.+......|..++...
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEET
T ss_pred CCCEEEEEECCCCEEEEEeCCc
Confidence 8886666655554599987653
No 274
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.51 E-value=0.00036 Score=63.06 Aligned_cols=189 Identities=13% Similarity=0.035 Sum_probs=117.4
Q ss_pred CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc
Q 040307 89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE 168 (339)
Q Consensus 89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 168 (339)
-+|.+....|+..+++.........+.+- ..+..++|++.++.++.+-..++.|..+++........+......
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~------~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~ 81 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGV------KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY 81 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCC------CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCC
Confidence 34444445999999987652222222221 467799999855555556666889999998654433333322234
Q ss_pred eeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCCeEEEEecCCCC
Q 040307 169 VYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSNKVVVLDIRFPT 245 (339)
Q Consensus 169 v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~~i~i~d~~~~~ 245 (339)
...+++. .++++++-...+.|.+.++........ ... .-.....++++|..|.++.+-.. .+. |...++..
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-~~~--~l~~P~~iavdp~~G~lY~tD~g~~~~-I~r~~~dG-- 155 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-VWK--DLDSPRALALDPAEGFMYWTEWGGKPK-IDRAAMDG-- 155 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE-ECS--SCCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTS--
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-EeC--CCCCcccEEEccCCCeEEEeCCCCCCE-EEEEeCCC--
Confidence 5677776 466667766778899999876553332 222 23467899999855544444212 333 77777754
Q ss_pred CceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 246 NPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 246 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.....+...-.....+++++++.++.++-...+.|..+++....
T Consensus 156 ~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 156 SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence 33344433456788999999875455555566788888887655
No 275
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.50 E-value=0.00018 Score=64.54 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=47.3
Q ss_pred EEEcCCCCCEEEEEeCC----------------CeEEEEECCCCeeeeeeeccCC----------ceeEEEe--cCC---
Q 040307 129 FDWAGFDTRRVATCSVD----------------TTCVIWDIDREILETQLVAHDR----------EVYDISW--GGF--- 177 (339)
Q Consensus 129 ~~~~~~~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~----------~v~~~~~--~~~--- 177 (339)
+++.+ ...+++.+..+ +.|..+|.++++.+..++.... ++. +.. .++
T Consensus 246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 44555 55666666554 4899999999998877653221 111 222 135
Q ss_pred cEEEEEeCCCcEEEEECCCCccee
Q 040307 178 NVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 178 ~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
..++.++.+|.++++|.++++..-
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEee
Confidence 567788899999999999887543
No 276
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.42 E-value=0.00056 Score=63.36 Aligned_cols=186 Identities=13% Similarity=0.033 Sum_probs=112.8
Q ss_pred eEEEeC-CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC----eeeeeeec
Q 040307 90 IVATSG-DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE----ILETQLVA 164 (339)
Q Consensus 90 ~la~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~----~~~~~~~~ 164 (339)
+|+.+. ..|+..++...+. ....... ..+..|+|.+.++.++++-...+.|+.+++... .....+..
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~--~~l~~~~------~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~ 468 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEY--TSLIPNL------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 468 (791)
T ss_dssp EEEEECBSSEEEECTTSCCC--EEEECSC------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred ccccccccceeEeeccCCcc--eeeecCC------CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec
Confidence 444444 4888888876652 2222222 567899999745555566566788999998653 22223332
Q ss_pred cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEec
Q 040307 165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDI 241 (339)
Q Consensus 165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~ 241 (339)
.......|++. .++++++-...+.|.+.++........+. . .-.....|+++|..+.++.+-... +. |...++
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~--~l~~P~gIaVDp~~g~LYwtD~g~~~~-I~~~~~ 544 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E--NGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL 544 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-C--TTCCEEEEEEETTTTEEEEEECSSSCE-EEEEET
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-C--CCCCcceEEEecCCCCEEEecCCCCCe-EEEEec
Confidence 33455677777 45677777778899999998665333332 2 234688999998445444443233 44 888887
Q ss_pred CCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 242 RFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 242 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.. .....+. ..-...+.|++++.+.+++++-...+.|...++....
T Consensus 545 dG--~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 545 NG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp TS--CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CC--CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 64 3333333 2335788999998874444444455678888876554
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.42 E-value=0.0005 Score=56.90 Aligned_cols=276 Identities=7% Similarity=-0.055 Sum_probs=141.9
Q ss_pred ccCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 16 AQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 16 ~~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
....+.+|.|.+. +..+++|. .+.|.. ....+................+.++.|.+ + .+++.+.
T Consensus 34 ~~~~~~~v~~~~~---~~~~~~G~-----~g~i~~--s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-----~~~~~g~ 97 (327)
T 2xbg_A 34 TTATILDMSFIDR---HHGWLVGV-----NATLME--TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-----EGWIVGE 97 (327)
T ss_dssp CSSCEEEEEESSS---SCEEEEET-----TTEEEE--ESSTTSSCEECCCCCSCCCCEEEEEEEET-T-----EEEEEEE
T ss_pred CCCcEEEEEECCC---CcEEEEcC-----CCeEEE--eCCCCCCCeECCCCCCCCCccEEEEEecC-C-----eEEEEEC
Confidence 3467899999877 77788665 676533 33333333321000011244688999986 4 5666654
Q ss_pred C-cEEEEeecCCc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eccCCceeEE
Q 040307 96 D-SLRLWEIHDDR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL-VAHDREVYDI 172 (339)
Q Consensus 96 ~-~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~ 172 (339)
. .|.. ..+.++ +.......... ..+..+.+.+ ++..++.+ .+|.|.. ....++..... ......+..+
T Consensus 98 ~g~i~~-S~DgG~tW~~~~~~~~~~-----~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 98 PPIMLH-TTDGGQSWSQIPLDPKLP-----GSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp TTEEEE-ESSTTSSCEECCCCTTCS-----SCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEE
T ss_pred CCeEEE-ECCCCCCceECccccCCC-----CCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEE
Confidence 4 3332 333333 22221111111 3467777764 55555554 5665432 22234433322 2344578889
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
.+. ++.+++.+ .++.+..-+-..+..-..+... ....+..+.+.| ++.+++ ++.++. +++.+... ++....+
T Consensus 169 ~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~--~~~~~~~~~~~~-~g~~~~-~~~~G~-~~~s~~D~-G~tW~~~ 241 (327)
T 2xbg_A 169 NRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRT--TSRRLHNMGFTP-DGRLWM-IVNGGK-IAFSDPDN-SENWGEL 241 (327)
T ss_dssp EECTTSCEEEEE-TTSSEEEEECTTCSSCEEEECC--SSSCEEEEEECT-TSCEEE-EETTTE-EEEEETTE-EEEECCC
T ss_pred EEcCCCcEEEEE-CCCcEEEEeCCCCCceeECCCC--CCCccceeEECC-CCCEEE-EeCCce-EEEecCCC-CCeeEec
Confidence 998 55555554 5555544321112222222222 345788899987 666554 455665 66653211 1111111
Q ss_pred e----cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceE
Q 040307 252 S----KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 252 ~----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~ 326 (339)
. .+...+.++.+.+++ .+++++ .+|.+ ++..+.+. ....+... .....+.++.|.+++ .++
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S~DgG~----------tW~~~~~~~~~~~~~~~v~~~~~~-~~~ 307 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCSQDGGQ----------TWQQDVDVKKVPSNFYKILFFSPD-QGF 307 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSS-CEEEEE-STTCE-EEESSTTS----------SCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred cCCcccCCcceEEEEecCCC-EEEEEe-CCCeE-EEeCCCCc----------ccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence 1 122358899999876 455554 46766 34444333 11111111 123567889887655 478
Q ss_pred EEecCCeEEEE
Q 040307 327 AIAFVNKLQLL 337 (339)
Q Consensus 327 ~~~~d~~v~~w 337 (339)
+++.+|.|.-+
T Consensus 308 ~~G~~G~i~~~ 318 (327)
T 2xbg_A 308 ILGQKGILLRY 318 (327)
T ss_dssp EECSTTEEEEE
T ss_pred EEcCCceEEEE
Confidence 88888887654
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.41 E-value=0.0005 Score=56.59 Aligned_cols=227 Identities=6% Similarity=-0.054 Sum_probs=130.5
Q ss_pred EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCC---cc
Q 040307 34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDD---RT 108 (339)
Q Consensus 34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~---~~ 108 (339)
+|+.+. .+.|+..+++. ..... .......+..++|.+.+. .++.+-.. .|..++++.. .
T Consensus 3 ~ll~~~-----~~~I~~i~~~~--~~~~~----~~~~~~~p~g~~~d~~~~----~ly~~D~~~~~I~~~~~~g~~~~~- 66 (316)
T 1ijq_A 3 YLFFTN-----RHEVRKMTLDR--SEYTS----LIPNLRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVS- 66 (316)
T ss_dssp EEEEEC-----BSSEEEEETTS--CCCEE----EECSCSSEEEEEEETTTT----EEEEEETTTTEEEEEEC--------
T ss_pred EEEEEC-----CCeEEEEECCC--cceEe----hhcCCCceEEEEEEeCCC----EEEEEECCCCcEEEEECCCCCCCc-
Confidence 455555 56788855543 33332 123445678999998662 55555543 8888888762 1
Q ss_pred eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEeC-C
Q 040307 109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVSG-D 186 (339)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-d 186 (339)
.....+...- .....+++.+.+++++++-...+.|.+.++........+.........+++. .+..|..+.. .
T Consensus 67 ~~~~~~~~~~-----~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 67 SYDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp -CEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred ccEEEEeCCC-----CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence 0122222111 3446888876355555665678899999986543332333233467889988 3444444443 3
Q ss_pred -CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec---CCCCeeEEE
Q 040307 187 -CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---HEGSVNGIS 262 (339)
Q Consensus 187 -~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~ 262 (339)
+.|..+++..... ..+... .-.....++++| ++..|+.+......|..+|+.. . ....+.. ......+++
T Consensus 142 ~~~I~~~~~dG~~~-~~~~~~--~~~~P~gla~d~-~~~~lY~~D~~~~~I~~~d~dg-~-~~~~~~~~~~~~~~P~gia 215 (316)
T 1ijq_A 142 PAKIKKGGLNGVDI-YSLVTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG-G-NRKTILEDEKRLAHPFSLA 215 (316)
T ss_dssp SCEEEEEETTSCCE-EEEECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-C-SCEEEEECTTTTSSEEEEE
T ss_pred CCeEEEEcCCCCCe-EEEEEC--CCCCceEEEEec-cCCEEEEEECCCCeEEEEecCC-C-ceEEEeecCCccCCcEEEE
Confidence 6788888765432 222222 234678999998 5555555544443499999864 2 2333322 123456788
Q ss_pred eccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 263 WAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+.. + .++++-...+.|..++..+++
T Consensus 216 v~~-~-~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 216 VFE-D-KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred EEC-C-EEEEEECCCCeEEEEeCCCCc
Confidence 853 3 566666677888888865544
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.41 E-value=0.00066 Score=57.90 Aligned_cols=229 Identities=7% Similarity=-0.021 Sum_probs=134.4
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCc--c
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDR--T 108 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~--~ 108 (339)
.+|+.+. .+.|+.. +.+...... .......+..|+|.+... .++.+-. . .|+.++++... .
T Consensus 84 ~~ll~~~-----~~~I~~i--~l~~~~~~~----~~~~~~~~~~l~~d~~~~----~lywsD~~~~~I~~~~~~g~~~~~ 148 (400)
T 3p5b_L 84 AYLFFTN-----RHEVRKM--TLDRSEYTS----LIPNLRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVS 148 (400)
T ss_dssp CEEEEEE-----TTEEEEE--CTTSCSCEE----EECSCSCEEEEEEETTTT----EEEEEETTTTEEEEEEC------C
T ss_pred ceeEEec-----cceeEEE--ccCCcceeE----eccccCcceEEeeeeccC----ceEEEecCCCeEEEEEcccCCCCC
Confidence 3555555 5788884 444444332 134456788999998662 5555544 3 88888886521 0
Q ss_pred eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEe-C-
Q 040307 109 ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVS-G- 185 (339)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~-~- 185 (339)
.....+.... .....+++.+..++++++-...+.|.+.+++.......+...-.....|++.+ +..|.... .
T Consensus 149 ~~~~~~~~~~-----~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~ 223 (400)
T 3p5b_L 149 SYDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 223 (400)
T ss_dssp CCEEEECSSC-----SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred cceEEEeCCC-----CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence 1222222222 45678888864566666666778999999875543333333344578899983 44444443 3
Q ss_pred CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE-ec--CCCCeeEEE
Q 040307 186 DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL-SK--HEGSVNGIS 262 (339)
Q Consensus 186 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~-~~--~~~~v~~~~ 262 (339)
.+.|...++........ ... .-.....++++| .+..|+.+......|..+|+.. .. ...+ .. .-....+++
T Consensus 224 ~~~I~~~~~dG~~~~~~-~~~--~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG-~~-~~~~~~~~~~l~~P~gl~ 297 (400)
T 3p5b_L 224 PAKIKKGGLNGVDIYSL-VTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG-GN-RKTILEDEKRLAHPFSLA 297 (400)
T ss_dssp SCCEEEEETTSCSCEEE-ECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-CC-CEEEEECSSTTSSEEEEE
T ss_pred CCEEEEEeCCCCccEEE-EEC--CCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCC-Cc-cEEEEeCCCCCCCCEEEE
Confidence 37888888876553332 222 225678999998 5555555554444499999864 22 2333 22 123455777
Q ss_pred eccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 263 WAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 263 ~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+. ++.++.+-...+.|..+|..+++
T Consensus 298 v~--~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 298 VF--EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EE--TTEEEEEESSSCSEEEEESSSCC
T ss_pred Ee--CCEEEEecCCCCeEEEEEcCCCC
Confidence 63 32467777777888888865554
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.39 E-value=0.0014 Score=60.73 Aligned_cols=229 Identities=8% Similarity=-0.024 Sum_probs=128.2
Q ss_pred EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--cEEEEeecCCcc--e
Q 040307 34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD--SLRLWEIHDDRT--E 109 (339)
Q Consensus 34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~--~i~iw~~~~~~~--~ 109 (339)
+|+.+. ...|+..+++ ...... + ......+..|+|.+... .++.+-.. .|+.++++.... .
T Consensus 397 ~Ll~an-----~~~Ir~i~l~--~~~~~~---l-~~~~~~~~gl~~d~~~~----~lY~sD~~~~~I~~~~l~g~~~~~~ 461 (791)
T 3m0c_C 397 YLFFTN-----RHEVRKMTLD--RSEYTS---L-IPNLRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVSS 461 (791)
T ss_dssp EEEEEC-----BSSEEEECTT--SCCCEE---E-ECSCSSEEEEEEETTTT----EEEEEETTTTEEEEEEC--------
T ss_pred cccccc-----ccceeEeecc--CCccee---e-ecCCCceEEEeecccCC----eeEEeeccceeEEEEeccCCCCCcc
Confidence 455545 4667774443 333332 1 33455678999998652 55555543 888888875321 1
Q ss_pred eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-C-CcEEEEEeCC-
Q 040307 110 LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-G-FNVFASVSGD- 186 (339)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d- 186 (339)
....+.... .....|++.+..++++++-...+.|.+.++........+...-.....|++. . +.++++-...
T Consensus 462 ~~~vi~~~l-----~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~ 536 (791)
T 3m0c_C 462 YDTVISRDI-----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP 536 (791)
T ss_dssp CEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred eeEEEecCC-----CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCC
Confidence 222222121 3456788876345666666678899999987544333333334457889998 3 4444443333
Q ss_pred CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecC--CCCeeEEEec
Q 040307 187 CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKH--EGSVNGISWA 264 (339)
Q Consensus 187 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~ 264 (339)
+.|...++........ ... .-.....|++++ .+..|+.+......|..+++.. ......+... -....+|++.
T Consensus 537 ~~I~~~~~dG~~~~~l-v~~--~l~~P~GLavD~-~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~ 611 (791)
T 3m0c_C 537 AKIKKGGLNGVDIYSL-VTE--NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF 611 (791)
T ss_dssp CEEEEEETTSCCEEEE-ECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE
T ss_pred CeEEEEecCCCceEEE-EeC--CCCCceEEEEec-CCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEe
Confidence 6788888876553333 222 235788999998 4455555544433488898864 2222222221 1234466663
Q ss_pred cCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 265 PLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 265 p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+.+++++-...+.|...+..++.
T Consensus 612 --~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 612 --EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCC
T ss_pred --CCEEEEEECCCCEEEEEeCCCCc
Confidence 32455555566777777755554
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.0009 Score=57.64 Aligned_cols=239 Identities=9% Similarity=0.031 Sum_probs=132.7
Q ss_pred CeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCC-eEEEeC-
Q 040307 19 PISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPD-IVATSG- 95 (339)
Q Consensus 19 ~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~la~~~- 95 (339)
.+..++++| + +..|.++. ..+.|+. ++.++..+.. + .........++|++++ + ++++..
T Consensus 138 ~P~~lavdp~~---~g~Lyv~d----~~~~I~~--id~~~~~v~~---~-~~~~~~P~~ia~d~~G-----~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKN---HNHLYLVG----EQHPTRL--IDFEKEYVST---V-YSGLSKVRTICWTHEA-----DSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTE---EEEEEEEE----BTEEEEE--EETTTTEEEE---E-ECCCSCEEEEEECTTS-----SEEEEEECC
T ss_pred CCCEEEECCCC---CCeEEEEe----CCCcEEE--EECCCCEEEE---E-ecCCCCcceEEEeCCC-----CEEEEEeCC
Confidence 567889998 5 55566666 2367777 4544444433 1 2344568899999999 6 666654
Q ss_pred --C---cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ccCCce
Q 040307 96 --D---SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-AHDREV 169 (339)
Q Consensus 96 --~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~v 169 (339)
. .+.+.+ ..+.......+... .....++++|.++.++++-..++.|..++...+....... ......
T Consensus 200 ~~~~~~~v~~~~-~~g~~~~~~~l~~~------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P 272 (430)
T 3tc9_A 200 NNNDRPNNYILT-RESGFKVITELTKG------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE 272 (430)
T ss_dssp SCTTSEEEEEEE-GGGTSCSEEEEEEC------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC
T ss_pred CCcccceEEEEe-CCCceeeeeeeccC------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc
Confidence 1 233333 33332212233221 3456788997556666666677899999998765422222 122346
Q ss_pred eEEEec-CCc-EEEEEeCCCcEEEEECCCC--cc--eeeEEeCCCC------------CCCeE-EEEEec-------CCC
Q 040307 170 YDISWG-GFN-VFASVSGDCSVRVFDLRDK--ER--STIIYENPVQ------------DCPLL-RLEWNK-------ADP 223 (339)
Q Consensus 170 ~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~--~~--~~~~~~~~~~------------~~~v~-~~~~~p-------~~~ 223 (339)
..++|+ +++ ++++-...+.|..++.... .. ...+...... -.... .++..+ .++
T Consensus 273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g 352 (430)
T 3tc9_A 273 FHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY 352 (430)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred eeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC
Confidence 789999 677 4555556788999876642 11 1111111000 01123 444432 124
Q ss_pred CeEEEEeeCCCeEEEEecCCCCCceEEEecC---------C---------CCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307 224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKH---------E---------GSVNGISWAPLYGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~---------~---------~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~ 285 (339)
.++++-..+.. |+.++.. + .+..+.+. . .....|+++|++..++++-..++.|+.+++
T Consensus 353 ~lyvaD~~n~~-I~~i~~~--G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 353 DFYFCDRENHC-IRILTPQ--G-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEEGGGTE-EEEECTT--S-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred eEEEEECCCcE-EEEECCC--C-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 44444333444 8888732 3 23333321 1 146789999953246666666778888776
Q ss_pred c
Q 040307 286 V 286 (339)
Q Consensus 286 ~ 286 (339)
+
T Consensus 429 e 429 (430)
T 3tc9_A 429 E 429 (430)
T ss_dssp C
T ss_pred C
Confidence 4
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.36 E-value=0.00068 Score=55.81 Aligned_cols=230 Identities=9% Similarity=-0.039 Sum_probs=133.1
Q ss_pred EEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeE
Q 040307 34 RLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELK 111 (339)
Q Consensus 34 ~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~ 111 (339)
+|+.+. .+.|+.++++........ . ......+..++|.+.+. .++.+-. . .|..++++......
T Consensus 6 ~ll~~~-----~~~I~~i~l~~~~~~~~~--~--~~~~~~~~~ld~d~~~~----~lyw~D~~~~~I~r~~~~g~~~~~- 71 (318)
T 3sov_A 6 LLLYAN-----RRDLRLVDATNGKENATI--V--VGGLEDAAAVDFVFSHG----LIYWSDVSEEAIKRTEFNKTESVQ- 71 (318)
T ss_dssp EEEEEC-----EEEEEEEETTCTTSCCEE--E--EEEEEEEEEEEEEGGGT----EEEEEETTTTEEEEEETTSSSCCC-
T ss_pred EEEEEc-----cCeEEEEECCCCceEEEE--E--ecCCCccEEEEEEeCCC----EEEEEECCCCcEEEEEccCCCceE-
Confidence 455555 578888666554322222 1 22223467899998652 5655544 3 88888887653111
Q ss_pred EEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec-CCcEEEEEe--CCCc
Q 040307 112 SLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG-GFNVFASVS--GDCS 188 (339)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~d~~ 188 (339)
..+...- .....+++.+..++++++-...+.|.++++........+.........+++. .+..|..+. ..+.
T Consensus 72 ~~~~~~l-----~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~ 146 (318)
T 3sov_A 72 NVVVSGL-----LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK 146 (318)
T ss_dssp EEEEECC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE
T ss_pred EEEcCCC-----CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE
Confidence 1111111 3455788876456666666667899999986543222222333456888888 344444444 2577
Q ss_pred EEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCC
Q 040307 189 VRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYG 268 (339)
Q Consensus 189 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 268 (339)
|...++....... +... .-.....++++| ++..|+.+......|..+|+.. ...............++++..+
T Consensus 147 I~r~~~dG~~~~~-~~~~--~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~~-- 219 (318)
T 3sov_A 147 IERAGMDGSSRFI-IINS--EIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFED-- 219 (318)
T ss_dssp EEEEETTSCSCEE-EECS--SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEETT--
T ss_pred EEEEEcCCCCeEE-EEEC--CCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeCC--
Confidence 8888876544222 2222 224678999998 5555555554444499999864 2222222223445667787533
Q ss_pred CeEEEEeCCCcEEEEEecCCC
Q 040307 269 RRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 269 ~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.++.+-...+.|..++..+++
T Consensus 220 ~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 220 ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEecCCCeEEEEECCCCC
Confidence 466676677888888876554
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.35 E-value=9.5e-06 Score=74.12 Aligned_cols=228 Identities=7% Similarity=-0.110 Sum_probs=122.4
Q ss_pred EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC------
Q 040307 22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG------ 95 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~------ 95 (339)
++++.++ ++++++|+. .++.+.+||... ........ ......-.++...+++ ++++.|+
T Consensus 247 ~~~~~~~---g~lyv~GG~---~~~~v~~yd~~t--~~W~~~~~--~~~~R~~~s~~~~~dg-----~iyv~GG~~~~~~ 311 (656)
T 1k3i_A 247 GISMDGN---GQIVVTGGN---DAKKTSLYDSSS--DSWIPGPD--MQVARGYQSSATMSDG-----RVFTIGGSWSGGV 311 (656)
T ss_dssp EEEECTT---SCEEEECSS---STTCEEEEEGGG--TEEEECCC--CSSCCSSCEEEECTTS-----CEEEECCCCCSSS
T ss_pred cccCCCC---CCEEEeCCC---CCCceEEecCcC--CceeECCC--CCccccccceEEecCC-----eEEEEeCcccCCc
Confidence 3566778 899999884 345788866543 33332111 1222223456677788 8888887
Q ss_pred --CcEEEEeecCCcceeEEEe--ecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCCeeeeee
Q 040307 96 --DSLRLWEIHDDRTELKSLL--NSNKTSEFSSAITSFDWAGFDTRRVATCSVD---------TTCVIWDIDREILETQL 162 (339)
Q Consensus 96 --~~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~ 162 (339)
+.+.+||..+.++..+... ....... . ...+.. ++..++.++.+ ..+..||..+..-....
T Consensus 312 ~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~--~---~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~ 385 (656)
T 1k3i_A 312 FEKNGEVYSPSSKTWTSLPNAKVNPMLTAD--K---QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA 385 (656)
T ss_dssp CCCCEEEEETTTTEEEEETTSCSGGGCCCC--T---TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE
T ss_pred ccccceEeCCCCCcceeCCCcccccccccc--c---cceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecC
Confidence 1689999988764433110 0000000 0 011122 45555555544 45678888776533322
Q ss_pred eccC---------CceeEEEec--CCcEEEEEeCCC-----------cEEEEECCCCcceeeE-EeCCCCCCCeEEEEEe
Q 040307 163 VAHD---------REVYDISWG--GFNVFASVSGDC-----------SVRVFDLRDKERSTII-YENPVQDCPLLRLEWN 219 (339)
Q Consensus 163 ~~~~---------~~v~~~~~~--~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~ 219 (339)
..+. ..-.++.|. ++.+++.|+.++ .+.+||..+..-.... ...+.. ..-.+++..
T Consensus 386 ~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R~~~~~~~l 464 (656)
T 1k3i_A 386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-RTFHTSVVL 464 (656)
T ss_dssp EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-CBSCEEEEC
T ss_pred CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-cccCCeEEC
Confidence 2111 122344443 678888887542 5778887776532221 011111 122344555
Q ss_pred cCCCCeEEEEeeC-----------CCeEEEEecCCCCCceEEEe---cCCCCeeEEEeccCCCCeEEEEeC
Q 040307 220 KADPRFMATVGMD-----------SNKVVVLDIRFPTNPVVVLS---KHEGSVNGISWAPLYGRRLCSVAD 276 (339)
Q Consensus 220 p~~~~~l~~~~~d-----------~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~ 276 (339)
| +++++++|+.+ .. +.+||..... ...+. .....-....+.|++ ++++.|+.
T Consensus 465 ~-~g~i~v~GG~~~~~~~~~~~~~~~-v~~ydp~t~~--W~~~~~~~~~R~~hs~a~ll~dg-~v~v~GG~ 530 (656)
T 1k3i_A 465 P-DGSTFITGGQRRGIPFEDSTPVFT-PEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDG-RVFNGGGG 530 (656)
T ss_dssp T-TSCEEEECCBSBCCTTCCCSBCCC-CEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred C-CCCEEEECCcccCcCcCCCCcccc-eEEEcCCCCc--eeecCCCCCccccccHhhcCCCc-EEEecCCC
Confidence 5 88999998865 33 8999986521 12221 111122344567898 68888884
No 284
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.26 E-value=0.0022 Score=57.51 Aligned_cols=163 Identities=9% Similarity=-0.029 Sum_probs=94.4
Q ss_pred CeEEEEECCCCeeeeeeec--cC--------CceeEEEe--cCC---cEEEEEeCCCcEEEEECCCCcceeeEEeCCCC-
Q 040307 146 TTCVIWDIDREILETQLVA--HD--------REVYDISW--GGF---NVFASVSGDCSVRVFDLRDKERSTIIYENPVQ- 209 (339)
Q Consensus 146 ~~v~i~d~~~~~~~~~~~~--~~--------~~v~~~~~--~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~- 209 (339)
+.|..+|.++++.+..++. |. .++. +.. .++ ..++.++.+|.++++|.++++..-........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999998877643 21 1121 122 134 47888999999999999888744322211000
Q ss_pred ---------CC--------------------------------CeEEEEEecCCCCeEEEEee-----------------
Q 040307 210 ---------DC--------------------------------PLLRLEWNKADPRFMATVGM----------------- 231 (339)
Q Consensus 210 ---------~~--------------------------------~v~~~~~~p~~~~~l~~~~~----------------- 231 (339)
.. .-..++++|..+ ++++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence 00 001356676444 3433321
Q ss_pred ----------------CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCC
Q 040307 232 ----------------DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNG 295 (339)
Q Consensus 232 ----------------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 295 (339)
.+. |..||+.+ ++.+-+..... ++..-.....+ .+++.++.||.++.||.++++
T Consensus 449 ~~~g~~~~~~p~~~~~~G~-l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~------ 518 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGS-LRAMDPVS-GKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK------ 518 (582)
T ss_dssp CCCCEEEEEEESCSSCSEE-EEEECTTT-CCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCC------
T ss_pred ceeccceeecCCCCCCcce-EEEEECCC-CCEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCC------
Confidence 344 88899887 55555554322 22222222234 378889999999999999988
Q ss_pred CCCCcccceeeecccceeE--EEEecCCCCceEE
Q 040307 296 GPSGDVEPELCYQSMAEIN--VVRWSPLELDWIA 327 (339)
Q Consensus 296 ~~~~~~~~~~~~~~~~~i~--~~~~~p~~~~l~~ 327 (339)
.+-.+.....+. -+.|..+|+.+++
T Consensus 519 -------~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 519 -------ELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp -------EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -------EEEEecCCCCcccCceEEEECCEEEEE
Confidence 343332222222 2666678875554
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.25 E-value=7.7e-06 Score=74.98 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=105.7
Q ss_pred eEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEE-eCCCeEEEEECCC----Ceeeeeeec
Q 040307 90 IVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATC-SVDTTCVIWDIDR----EILETQLVA 164 (339)
Q Consensus 90 ~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~----~~~~~~~~~ 164 (339)
+|.+....|+..+++..+ ....+... ..+..++|++ ....|+.+ ...+.|+.+++.. ......+..
T Consensus 380 ll~~~~~~I~~id~~~~~--~~~~~~~~------~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~ 450 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSE--YTSLIPNL------RNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450 (699)
T ss_dssp BCCCCTTC-CEECTTSCC--EECCSCCC------TTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred EEecCccceEEEeCCCCc--ceeeeccC------cceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence 333333377777877654 22222221 3456889987 44444444 4568899999875 222222221
Q ss_pred cCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEec
Q 040307 165 HDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDI 241 (339)
Q Consensus 165 ~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~ 241 (339)
.......|++. .++++++-...+.|.++++........ ... .......++++|..+.++++-... +. |..+++
T Consensus 451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l-~~~--~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~ 526 (699)
T 1n7d_A 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FRE--QGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL 526 (699)
T ss_dssp CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEE-CCC--SSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCS
T ss_pred CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEE-EeC--CCCCcceEEEccCCCcEEEcccCCCCe-EEEEeC
Confidence 12234567776 456666656678899999876543322 221 123457889998555554443222 45 887777
Q ss_pred CCCCCceEEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 242 RFPTNPVVVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 242 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.. .....+. ..-...+.|+|+|++.+++++-+..+.|..+++....
T Consensus 527 dG--~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 527 NG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp SS--CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred CC--CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence 53 2222222 2234567899999875566666677789999887544
No 286
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.24 E-value=0.0013 Score=58.76 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=81.0
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEEeecCCC--ccCCCCEEEEEEcCCCCCEEEEEeC------CCeEEEEECCCCeee
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKT--SEFSSAITSFDWAGFDTRRVATCSV------DTTCVIWDIDREILE 159 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~ 159 (339)
.+++...+ .+..+|..+++..-...+..+.. .....++ .. ++ .++.++. ++.|..+|.++++.+
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPF----VA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE----EE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCE----EE--CC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 45555455 89999999887322222222110 0000111 11 33 4555544 799999999999987
Q ss_pred eeeeccCCc-------------------------------------e-eEEEec-CCcEEEEEeCC--------------
Q 040307 160 TQLVAHDRE-------------------------------------V-YDISWG-GFNVFASVSGD-------------- 186 (339)
Q Consensus 160 ~~~~~~~~~-------------------------------------v-~~~~~~-~~~~l~~~~~d-------------- 186 (339)
..+...... + ..+++. ....+..+..+
T Consensus 190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence 766432110 0 123444 34455555432
Q ss_pred --CcEEEEECCCCcceeeEEeCCCC--------CCCeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 187 --CSVRVFDLRDKERSTIIYENPVQ--------DCPLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 187 --~~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
+.|..+|.++++..=..... .+ ..++. +...+ ++ ..++.++.++. ++++|..+ ++.+...
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~-~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~-l~~lD~~t-G~~~w~~ 342 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKT-PHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGI-LYTLNREN-GNLIVAE 342 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESS-TTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSE-EEEEETTT-CCEEEEE
T ss_pred eEEEEEEEecCCCcEEEEecCC-CCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcE-EEEEECCC-CCEEeee
Confidence 25899999988743332221 11 11221 22222 55 35677777887 99999877 5555444
No 287
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.23 E-value=0.0015 Score=54.54 Aligned_cols=236 Identities=11% Similarity=0.067 Sum_probs=121.6
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCC----CCEEEEEeCC-
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFD----TRRVATCSVD- 145 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~d- 145 (339)
.....++|.|++ +++++-.. .|++++ +++...+..+.. ...+ ......|+|+| + +.+.++-...
T Consensus 31 ~~P~~ia~~pdG-----~l~V~e~~g~I~~i~--~g~~~~~~~~~v-~~~g-~~~p~gia~~p-df~~~g~lYv~~~~~~ 100 (352)
T 2ism_A 31 EVPWALAFLPDG-----GMLIAERPGRIRLFR--EGRLSTYAELSV-YHRG-ESGLLGLALHP-RFPQEPYVYAYRTVAE 100 (352)
T ss_dssp SCEEEEEECTTS-----CEEEEETTTEEEEEE--TTEEEEEEECCC-CCST-TCSEEEEEECT-TTTTSCEEEEEEEECT
T ss_pred CCceEEEEcCCC-----eEEEEeCCCeEEEEE--CCCccEeecceE-eecC-CCCceeEEECC-CCCCCCEEEEEEecCC
Confidence 356899999999 88887665 888887 443223322220 0001 15678999998 5 3444443332
Q ss_pred ----CeEEEEECCCCe-----ee-eeee---ccCCceeEEEec-CCcEEEEEeCC-------------CcEEEEECCCC-
Q 040307 146 ----TTCVIWDIDREI-----LE-TQLV---AHDREVYDISWG-GFNVFASVSGD-------------CSVRVFDLRDK- 197 (339)
Q Consensus 146 ----~~v~i~d~~~~~-----~~-~~~~---~~~~~v~~~~~~-~~~~l~~~~~d-------------~~i~i~d~~~~- 197 (339)
+.|..++...+. .+ ..+. ........++|. ++.++++.+.. +.|.-++....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 678888876431 11 1122 111233678998 67666654321 44555555431
Q ss_pred -----------cceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC-------eEEEEecCC---------------C
Q 040307 198 -----------ERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN-------KVVVLDIRF---------------P 244 (339)
Q Consensus 198 -----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-------~i~i~d~~~---------------~ 244 (339)
......... + .....++|+|.++.++++-..... .|.+..... .
T Consensus 181 p~~npf~~~~~~~~~i~a~G--~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 257 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLG--H-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRY 257 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEEC--C-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred CCCCcccCCCCCCccEEEEc--C-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCC
Confidence 011111111 1 235678999855665554322221 133322111 0
Q ss_pred CCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCc
Q 040307 245 TNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELD 324 (339)
Q Consensus 245 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 324 (339)
..++..+. +......++| .++ .++++.-..+.|...+++.... .. ..............+.++++.|+|..
T Consensus 258 ~~p~~~~~-~~~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~-~~-----~~~~~~~~~~~~~rp~~v~~~pdG~l 328 (352)
T 2ism_A 258 RDPLYFWP-QGFPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERG-RW-----RVLRVETALSGFGRLREVQVGPDGAL 328 (352)
T ss_dssp CCCSEECT-TCCCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETT-EE-----EEEEEEEEEESSCCEEEEEECTTSCE
T ss_pred cCCeEecC-CCCCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCc-ce-----eecchheecccCCCeeEEEECCCCcE
Confidence 12333332 2234567787 455 4666655667788887765430 00 00001112223457899999999976
Q ss_pred eEEEe
Q 040307 325 WIAIA 329 (339)
Q Consensus 325 l~~~~ 329 (339)
+++..
T Consensus 329 yv~~~ 333 (352)
T 2ism_A 329 YVTTS 333 (352)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66553
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.23 E-value=0.00058 Score=56.17 Aligned_cols=190 Identities=8% Similarity=0.130 Sum_probs=112.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-----Cc---EEEEEeC---CCcEEEEECC--CCccee
Q 040307 135 DTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-----FN---VFASVSG---DCSVRVFDLR--DKERST 201 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~---~l~~~~~---d~~i~i~d~~--~~~~~~ 201 (339)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-+ +. ++++... +++|.+|++. +.. ..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456777778899999999 8888887753 4555555542 22 3333333 5789999774 332 22
Q ss_pred eEEeC--C--CCCCCeEEEEE--ecCCCC-eEEEEeeCCCeEEEEecCCC------CCceEEEecCCCCeeEEEeccCCC
Q 040307 202 IIYEN--P--VQDCPLLRLEW--NKADPR-FMATVGMDSNKVVVLDIRFP------TNPVVVLSKHEGSVNGISWAPLYG 268 (339)
Q Consensus 202 ~~~~~--~--~~~~~v~~~~~--~p~~~~-~l~~~~~d~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~p~~~ 268 (339)
.+... + .....+..+++ +|..+. ++++...++. +..|++... .+.+.++.. ...+-.+...+..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~- 191 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY- 191 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT-
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC-
Confidence 22110 1 11145566777 665555 5677777776 988888431 234555554 4578899999887
Q ss_pred CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee--c-ccceeEEEEe--cCCCC-ceEEEe-cCCeEEEEeC
Q 040307 269 RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY--Q-SMAEINVVRW--SPLEL-DWIAIA-FVNKLQLLKV 339 (339)
Q Consensus 269 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~--~p~~~-~l~~~~-~d~~v~~w~v 339 (339)
..|+.+-++.. ||.+...... . .....+... + ....+..|+. .++++ +|++++ .++++.+|+.
T Consensus 192 g~Lyv~eEd~G--Iw~~da~p~~----~--~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 192 GRLYIAEEDEA--IWKFSAEPDG----G--SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp TEEEEEETTTE--EEEEECSTTS----C--SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred CeEEEecccce--EEEEeCCcCC----C--CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 48999988855 5555532100 0 000122222 2 2346778877 55565 677777 6778888863
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.19 E-value=0.0024 Score=55.04 Aligned_cols=239 Identities=10% Similarity=0.017 Sum_probs=132.3
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC--
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-- 96 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-- 96 (339)
....++|.|+.+ ...|.++. ..+.|+. ++..++.... + ......+..++|++++ +++++...
T Consensus 140 ~P~gvavd~~s~-~g~Lyv~D----~~~~I~~--id~~~g~v~~---~-~~~~~~P~giavd~dG-----~lyVad~~~~ 203 (433)
T 4hw6_A 140 NIWRMMFDPNSN-YDDLYWVG----QRDAFRH--VDFVNQYVDI---K-TTNIGQCADVNFTLNG-----DMVVVDDQSS 203 (433)
T ss_dssp CCCEEEECTTTT-TCEEEEEC----BTSCEEE--EETTTTEEEE---E-CCCCSCEEEEEECTTC-----CEEEEECCSC
T ss_pred CCceEEEccccC-CCEEEEEe----CCCCEEE--EECCCCEEEE---e-ecCCCCccEEEECCCC-----CEEEEcCCCC
Confidence 466888988200 33455555 2377777 4444444443 1 2344568999999999 77777641
Q ss_pred ----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec--cCCcee
Q 040307 97 ----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA--HDREVY 170 (339)
Q Consensus 97 ----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~v~ 170 (339)
.+...+..... .....+... .....++++|.++.++++-..++.|+.+|..++.....+.. ....-.
T Consensus 204 ~~~~gv~~~~~~~~~-~~~~~~~~~------~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~ 276 (433)
T 4hw6_A 204 DTNTGIYLFTRASGF-TERLSLCNA------RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNF 276 (433)
T ss_dssp TTSEEEEEECGGGTT-CCEEEEEEC------SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCE
T ss_pred cccceEEEEECCCCe-ecccccccc------CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcc
Confidence 23333332221 111122211 34557888874566666656678999999887765222211 112234
Q ss_pred EEEec-CCc-EEEEEeCCCcEEEEECCC--Ccc--eeeEEeCCC------------CCCCeEEEEE---------ecCCC
Q 040307 171 DISWG-GFN-VFASVSGDCSVRVFDLRD--KER--STIIYENPV------------QDCPLLRLEW---------NKADP 223 (339)
Q Consensus 171 ~~~~~-~~~-~l~~~~~d~~i~i~d~~~--~~~--~~~~~~~~~------------~~~~v~~~~~---------~p~~~ 223 (339)
.++++ +++ ++++-...+.|+.+++.. ... +..+..... .-.....+++ .+ ++
T Consensus 277 ~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g 355 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EY 355 (433)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CC
Confidence 69999 677 455555668899988653 211 111111100 0123567888 43 55
Q ss_pred CeEEEEeeCCCeEEEEecCCCCCceEEEecC------------------CCCeeEEEec-cCCCCeEEEEeCCCcEEEEE
Q 040307 224 RFMATVGMDSNKVVVLDIRFPTNPVVVLSKH------------------EGSVNGISWA-PLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 224 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~------------------~~~v~~~~~~-p~~~~~l~~~~~dg~v~iwd 284 (339)
.++++-..++. |+.++.. + .+.++.+. -.....|+++ +++ .++++-..+++|+.++
T Consensus 356 ~lyvaD~~n~~-I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 356 DFYFCDRDSHT-VRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIA 430 (433)
T ss_dssp EEEEEETTTTE-EEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEE
T ss_pred cEEEEECCCCE-EEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEe
Confidence 55555444444 8888742 3 23333321 1235689999 555 4666666677888877
Q ss_pred ec
Q 040307 285 VV 286 (339)
Q Consensus 285 ~~ 286 (339)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.0026 Score=55.27 Aligned_cols=251 Identities=8% Similarity=0.015 Sum_probs=134.2
Q ss_pred ceEEEEcCC-CCCCCCCeEEEeCC--cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEE-------cCCCCCEEEEEe
Q 040307 74 PTNIAFFPS-EETLNPDIVATSGD--SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDW-------AGFDTRRVATCS 143 (339)
Q Consensus 74 v~~l~~~~~-~~~~~~~~la~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~l~~~~ 143 (339)
...|+|.|. .. .++++... .|++.|++++. +..+.......+ .....++| ++ +++.|+++.
T Consensus 141 p~~la~dp~~~~----~Lyv~~~~~~~i~~ID~~~~~---v~~l~~~~~~~~-~~p~~ia~~~~~~~~d~-~G~~lyvad 211 (496)
T 3kya_A 141 NGRLAFDPLNKD----HLYICYDGHKAIQLIDLKNRM---LSSPLNINTIPT-NRIRSIAFNKKIEGYAD-EAEYMIVAI 211 (496)
T ss_dssp EEEEEEETTEEE----EEEEEEETEEEEEEEETTTTE---EEEEECCTTSSC-SBEEEEEECCCBTTTBC-TTCEEEEEE
T ss_pred CCEEEEccCCCC----EEEEEECCCCeEEEEECCCCE---EEEEEccCcccc-CCCcEEEEeecccccCC-CCCEEEEEe
Confidence 468899984 31 56666554 78888888775 222222111111 46889999 97 787666655
Q ss_pred CCC-------eEEEEECCC-Ceee-----eeeeccCCceeEEEecC--CcEEEEEeCCCcEEEEECC-------CCcc--
Q 040307 144 VDT-------TCVIWDIDR-EILE-----TQLVAHDREVYDISWGG--FNVFASVSGDCSVRVFDLR-------DKER-- 199 (339)
Q Consensus 144 ~d~-------~v~i~d~~~-~~~~-----~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~-------~~~~-- 199 (339)
..+ .|.+++... +... ..+... .....++.++ +.++++-..++.|..+|+. ++..
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 543 366676443 2221 222222 2345677783 5666667778889999987 4442
Q ss_pred ---------eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce---EEEecC---C---------
Q 040307 200 ---------STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV---VVLSKH---E--------- 255 (339)
Q Consensus 200 ---------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~---~~~~~~---~--------- 255 (339)
...+...+ .......++|+| ++++|+.+......|+.++.......+ ..+.+. .
T Consensus 291 p~~~~~~g~~~~l~~~~-~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~ 368 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIA-DPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTE 368 (496)
T ss_dssp CBGGGCTTTEEEEEECS-SSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred ccccccccccceeEecC-CCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccc
Confidence 11222221 234568999998 888766666555558887654322111 222221 0
Q ss_pred ---CCee-EEEec-------cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCC----------Ccccc-eeeeccccee
Q 040307 256 ---GSVN-GISWA-------PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPS----------GDVEP-ELCYQSMAEI 313 (339)
Q Consensus 256 ---~~v~-~~~~~-------p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~i 313 (339)
.... .++.. +++ .++++=....+|+.++. .+......+... +...- ......-...
T Consensus 369 a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 369 ARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp CBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred cccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 1233 44444 445 45555556778888873 222000000000 00000 0000011246
Q ss_pred EEEEecCC-CCceEEEecCCeEEEEe
Q 040307 314 NVVRWSPL-ELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 314 ~~~~~~p~-~~~l~~~~~d~~v~~w~ 338 (339)
..|++.++ +..+++=..+..||.+.
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 78999997 76555666788888775
No 291
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.15 E-value=0.0034 Score=56.30 Aligned_cols=152 Identities=16% Similarity=0.062 Sum_probs=82.1
Q ss_pred eEEEeCC-cEEEEeecCCcceeEEEeecCCC--ccCCCCEEEEEEcCCCCCEEEEEe------CCCeEEEEECCCCeeee
Q 040307 90 IVATSGD-SLRLWEIHDDRTELKSLLNSNKT--SEFSSAITSFDWAGFDTRRVATCS------VDTTCVIWDIDREILET 160 (339)
Q Consensus 90 ~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~------~d~~v~i~d~~~~~~~~ 160 (339)
+++...+ .+.-+|..+++..-...+..+.. .....++ .. ++ .++.++ .++.|+.+|.++++.+.
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~----v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPY----VV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE----EE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCE----EE--CC-EEEEEecccccCCCCeEEEEECCCCcEEE
Confidence 5554445 88999998887322222222110 0000111 11 34 445544 38999999999999877
Q ss_pred eeeccCCc-------------------------------------e-eEEEec-CCcEEEEEeCC---------------
Q 040307 161 QLVAHDRE-------------------------------------V-YDISWG-GFNVFASVSGD--------------- 186 (339)
Q Consensus 161 ~~~~~~~~-------------------------------------v-~~~~~~-~~~~l~~~~~d--------------- 186 (339)
.+...... + ..+++. ..++++.+..+
T Consensus 197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y 276 (599)
T 1w6s_A 197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW 276 (599)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc
Confidence 66432111 0 023344 35566666554
Q ss_pred -CcEEEEECCCCcceeeEEeCCCCCC-------CeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 187 -CSVRVFDLRDKERSTIIYENPVQDC-------PLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 187 -~~i~i~d~~~~~~~~~~~~~~~~~~-------~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
+.|..+|.++++..=. +....+.. ...-+.....++ ..++.++.++. ++++|.++ ++++...
T Consensus 277 ~~sv~Ald~~TG~~~W~-~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~t-G~~lw~~ 349 (599)
T 1w6s_A 277 TMTIFGRDADTGEAKFG-YQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTD-GALVSAN 349 (599)
T ss_dssp SSEEEEEETTTCCEEEE-EESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTT-CCEEEEE
T ss_pred cceEEEEeCCCCceeeE-eecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcE-EEEEECCC-CCEeecc
Confidence 3789999998874333 33222211 111122210155 46677778887 99999887 5555443
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.13 E-value=0.0073 Score=58.52 Aligned_cols=190 Identities=8% Similarity=0.058 Sum_probs=111.9
Q ss_pred CCEEEEEe----------CCCeEEEEECCCCeeeeee-eccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEE
Q 040307 136 TRRVATCS----------VDTTCVIWDIDREILETQL-VAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIY 204 (339)
Q Consensus 136 ~~~l~~~~----------~d~~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 204 (339)
..+|+.|. ..|.|++|++..++..... ....+++++++--.+.+++.. ...|++|++...+......
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L~~~~ 921 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKELRTEC 921 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCEEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceEEEEe
Confidence 46888876 3578999998654422211 234678888876656544443 4789999998765333111
Q ss_pred eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--CCCCeeEEEeccCCCCeEEEEeCCCcEEE
Q 040307 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK--HEGSVNGISWAPLYGRRLCSVADDSRALI 282 (339)
Q Consensus 205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~i 282 (339)
.. . ..+..+.... .++++++|..-.+ +.++..+.....+..+.. +..+++++.+-.++ .++.+..+|.+.+
T Consensus 922 ~~--~-~~i~~~~l~~-~~~~I~vgD~~~S-v~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~v 994 (1158)
T 3ei3_A 922 NH--Y-NNIMALYLKT-KGDFILVGDLMRS-VLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD--NFLGAENAFNLFV 994 (1158)
T ss_dssp EE--C-CCSCEEEEEE-ETTEEEEEESSBC-EEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT--EEEEEETTSEEEE
T ss_pred ec--c-ccEEEEEEec-cCCEEEEEEhhhe-EEEEEEEcCCCeEEEEEeecccccEEEEEEEccC--cEEEEcCCCcEEE
Confidence 11 1 1122222222 4678888888877 877765543333444432 34578888887664 6778999999999
Q ss_pred EEecCCCCCCCCCCCCCcccceeeecccceeEEEE---ecCCC---------CceEEEecCCeEEEE
Q 040307 283 WEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVR---WSPLE---------LDWIAIAFVNKLQLL 337 (339)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~p~~---------~~l~~~~~d~~v~~w 337 (339)
........ .. .....+.....+.....|+++. +.+.+ +.++.++.+|.|-+.
T Consensus 995 l~~~~~~~-~~--~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 995 CQKDSAAT-TD--EERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEECTTCC-ST--TGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred EecCCCCC-Cc--cccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 98877431 11 0011122223334466677775 33332 236678888887654
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.11 E-value=0.0026 Score=52.57 Aligned_cols=231 Identities=8% Similarity=0.032 Sum_probs=124.1
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD- 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~- 96 (339)
..+.+|.|.|. ..+++|. .+.|.. -...+......... ..++..+..+.+.+++ .+++.+.+
T Consensus 80 ~~~~~i~~~~~----~~~~~g~-----~g~i~~--S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~-----~~~~~~~~g 142 (327)
T 2xbg_A 80 YRFNSVSFQGN----EGWIVGE-----PPIMLH--TTDGGQSWSQIPLD-PKLPGSPRLIKALGNG-----SAEMITNVG 142 (327)
T ss_dssp CEEEEEEEETT----EEEEEEE-----TTEEEE--ESSTTSSCEECCCC-TTCSSCEEEEEEEETT-----EEEEEETTC
T ss_pred ccEEEEEecCC----eEEEEEC-----CCeEEE--ECCCCCCceECccc-cCCCCCeEEEEEECCC-----CEEEEeCCc
Confidence 36788888754 4455554 565544 44334444431000 1234567888888777 77777764
Q ss_pred cEEEEeecC-Cc-ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEE-EECCCCeeeeee-eccCCceeEE
Q 040307 97 SLRLWEIHD-DR-TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVI-WDIDREILETQL-VAHDREVYDI 172 (339)
Q Consensus 97 ~i~iw~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i-~d~~~~~~~~~~-~~~~~~v~~~ 172 (339)
.| |...+ ++ +... ..... ..+..+.+.| ++.+++.+. +|.+.. .|- .++....+ ......+..+
T Consensus 143 ~v--~~S~DgG~tW~~~--~~~~~-----~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~ 210 (327)
T 2xbg_A 143 AI--YRTKDSGKNWQAL--VQEAI-----GVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNM 210 (327)
T ss_dssp CE--EEESSTTSSEEEE--ECSCC-----CCEEEEEECT-TSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEE
T ss_pred cE--EEEcCCCCCCEEe--ecCCC-----cceEEEEEcC-CCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCcccee
Confidence 43 33322 32 2222 22222 5788999997 777776654 455443 332 12222222 2344578888
Q ss_pred Eec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeC-CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 173 SWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYEN-PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 173 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
.+. ++. +..++.+|.+++.+...++.-..+... ......+..+++.| ++.+++++ .++. + ++.... ++.-..
T Consensus 211 ~~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~-i-~~S~Dg-G~tW~~ 284 (327)
T 2xbg_A 211 GFTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGA-L-LCSQDG-GQTWQQ 284 (327)
T ss_dssp EECTTSC-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTC-E-EEESST-TSSCEE
T ss_pred EECCCCC-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCe-E-EEeCCC-CcccEE
Confidence 888 454 445567787777642222211111111 01223588899986 66666554 4665 5 333332 443444
Q ss_pred Eec---CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEe
Q 040307 251 LSK---HEGSVNGISWAPLYGRRLCSVADDSRALIWEV 285 (339)
Q Consensus 251 ~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~ 285 (339)
+.. ....+.++.|.+++ .+++++.+|.|.-++-
T Consensus 285 ~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 285 DVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT 320 (327)
T ss_dssp CGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred cCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence 432 23568889998654 5667777887766553
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.02 E-value=0.0075 Score=54.53 Aligned_cols=228 Identities=7% Similarity=-0.042 Sum_probs=136.1
Q ss_pred cEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCccee
Q 040307 33 SRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTEL 110 (339)
Q Consensus 33 ~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~ 110 (339)
.+|+.+. .+.|+..+++... ... .+....-..+..|+|.+.+. .++.+-. + .|..++++....
T Consensus 7 ~~Ll~s~-----~~~I~~i~l~~~~--~~~--~~~~~~~~~~~~l~~d~~~~----~lywtD~~~~~I~r~~~~g~~~-- 71 (628)
T 4a0p_A 7 AFLLFSR-----RADIRRISLETNN--NNV--AIPLTGVKEASALDFDVTDN----RIYWTDISLKTISRAFMNGSAL-- 71 (628)
T ss_dssp CEEEEEE-----TTEEEEEESSCTT--CEE--ECCCCSCSCEEEEEEETTTT----EEEEEETTTTEEEEEETTSCSC--
T ss_pred cEEEEEe-----CCcEEEEECCCCC--cce--EEEcCCCCceEEEEEECCCC----EEEEEECCCCeEEEEECCCCCc--
Confidence 3555555 6889986665432 221 11122334678999999763 5555544 3 888888876542
Q ss_pred EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecC-CcEEEEEe--CCC
Q 040307 111 KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGG-FNVFASVS--GDC 187 (339)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~--~d~ 187 (339)
...+.... .....+++.+..++++.+-...+.|.+.++........+...-.....|++.| ...|..+. ..+
T Consensus 72 ~~v~~~g~-----~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~ 146 (628)
T 4a0p_A 72 EHVVEFGL-----DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP 146 (628)
T ss_dssp EEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred EEEEeCCC-----CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence 22222211 34557888764556666666678999999865432222223334568899983 34444443 256
Q ss_pred cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCC
Q 040307 188 SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLY 267 (339)
Q Consensus 188 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~ 267 (339)
.|...++......... . .-.....+++++ .+..|+.+......|..+|+..... ..+........++++.. +
T Consensus 147 ~I~r~~~dG~~~~~l~-~---~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~ 218 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLV-P---NVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-D 218 (628)
T ss_dssp EEEEEETTSCSCEEEE-C---SCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-T
T ss_pred EEEEEeCCCCceEEEE-C---CCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-C
Confidence 7777887765533332 2 235778999998 5555665555444499999875332 33444344566788765 3
Q ss_pred CCeEEEEeCCCcEEEEEecCCC
Q 040307 268 GRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 268 ~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.++++-...+.|...|..++.
T Consensus 219 -~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 219 -YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp -EEEEEETTTTEEEEEETTTCC
T ss_pred -EEEEecCCCCEEEEEECCCCC
Confidence 466666667888888865554
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.00 E-value=0.0082 Score=54.22 Aligned_cols=160 Identities=14% Similarity=0.023 Sum_probs=99.4
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEec--CCcEEEEEeCCCcEEEEECCCCccee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWG--GFNVFASVSGDCSVRVFDLRDKERST 201 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~ 201 (339)
..+.+++|.+.++.++.+-...+.|+.+++........+...-.....+++. .++++++-+..+.|.+.++......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~- 427 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK- 427 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE-
Confidence 4577899997455555555567889999986543333333222456677876 4667777677889999998866532
Q ss_pred eEEeCCCCCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEecCCCCCceEEE-ecCCCCeeEEEeccCCCCeEEEEeCCCc
Q 040307 202 IIYENPVQDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDIRFPTNPVVVL-SKHEGSVNGISWAPLYGRRLCSVADDSR 279 (339)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 279 (339)
.+... .-.....++++|..|.++.+-... .. |...++.. .....+ ...-...+.+++++++.++.++=+..+.
T Consensus 428 ~l~~~--~l~~P~~iavdp~~G~ly~tD~g~~~~-I~r~~~dG--~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~ 502 (619)
T 3s94_A 428 ILISE--DLEEPRAIVLDPMVGYMYWTDWGEIPK-IERAALDG--SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK 502 (619)
T ss_dssp EEECT--TCCSEEEEEEETTTTEEEEEECSSSCE-EEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEC--CCCCeeeEEEEcCCCcEEEecCCCCCE-EEEEccCC--CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCE
Confidence 22322 235689999999555555543222 33 66666653 223333 2234567899999977434444445577
Q ss_pred EEEEEecCCC
Q 040307 280 ALIWEVVGPG 289 (339)
Q Consensus 280 v~iwd~~~~~ 289 (339)
|..+++....
T Consensus 503 I~~~~~dG~~ 512 (619)
T 3s94_A 503 IEVMNTDGTG 512 (619)
T ss_dssp EEEEESSSCC
T ss_pred EEEEecCCCc
Confidence 8888876554
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.97 E-value=0.00021 Score=65.54 Aligned_cols=221 Identities=12% Similarity=-0.003 Sum_probs=115.7
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCC--CcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPET--SDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG 95 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~ 95 (339)
..+..++|.+. +..|..+.. ..+.|+.++++... ..... .+ ...-..+..|++.+.+. .++++-.
T Consensus 406 ~~p~gla~d~~---~~~Ly~sD~---~~~~I~~~~~~g~~~~~~~~~--~i-~~~~~~P~glavD~~~g----~LY~tD~ 472 (699)
T 1n7d_A 406 RNVVALDTEVA---SNRIYWSDL---SQRMICSTQLDRAHGVSSYDT--VI-SRDIQAPDGLAVDWIHS----NIYWTDS 472 (699)
T ss_dssp TTCCCCEEETT---TTEEEECCT---TTTSBEEEESCCCCC-CCCCC--BC-CSCC--CCCEECCCSSS----BCEECCT
T ss_pred cceEEEccccc---cCeEEEEec---CCCeEEEEecCCCCCCcceEE--EE-eCCCCCcceEEEEeeCC----cEEEEec
Confidence 45678899987 666666552 46788886665311 11111 11 11123456788885542 5666544
Q ss_pred -C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-CeEEEEECCCCeeeeee-eccCCceeE
Q 040307 96 -D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-TTCVIWDIDREILETQL-VAHDREVYD 171 (339)
Q Consensus 96 -~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~~v~i~d~~~~~~~~~~-~~~~~~v~~ 171 (339)
. .|.+++++... ....+.... .....+++.|..+.++++-... +.|...++.... ...+ ...-.....
T Consensus 473 ~~~~I~v~d~dg~~--~~~l~~~~~-----~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnG 544 (699)
T 1n7d_A 473 VLGTVSVADTKGVK--RKTLFREQG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNG 544 (699)
T ss_dssp TTSCEEEEBSSSCC--EEEECCCSS-----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCC
T ss_pred cCCeEEEEecCCCc--eEEEEeCCC-----CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccE
Confidence 3 89999987654 222222211 3456888988444444443222 678887775332 2222 122234567
Q ss_pred EEec-C-CcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE
Q 040307 172 ISWG-G-FNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV 249 (339)
Q Consensus 172 ~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 249 (339)
|+++ + +.++++-...+.|..+|+....... +............|++.. +.++++....+. |..+|..+ ++.+.
T Consensus 545 lavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~-~~~~~~~~~~P~glavd~--~~lywtd~~~~~-V~~~d~~~-G~~~~ 619 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAVFE--DKVFWTDIINEA-IFSANRLT-GSDVN 619 (699)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECSSSSCCEE-ECCCSSSCSSCCCCEEET--TEEEEECSTTTC-EEEEETTT-EEEEE
T ss_pred EEEeccCCEEEEEecCCCeEEEEccCCCceEE-EEecCCcCCCceEeEEEC--CEEEEEeCCCCe-EEEEEccC-CCceE
Confidence 8998 4 5555666667789999987544222 222111122344566653 344444444445 88888654 33333
Q ss_pred EEecCCCCeeEEEec
Q 040307 250 VLSKHEGSVNGISWA 264 (339)
Q Consensus 250 ~~~~~~~~v~~~~~~ 264 (339)
.+.........|++.
T Consensus 620 ~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 620 LLAENLLSPEDMVLF 634 (699)
T ss_dssp CCCTTCSSCCCCCBC
T ss_pred EeecCCCCCcEEEEe
Confidence 333222233444433
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.97 E-value=0.0045 Score=50.15 Aligned_cols=240 Identities=7% Similarity=0.098 Sum_probs=152.9
Q ss_pred EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-CcEEE
Q 040307 22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-DSLRL 100 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~~i~i 100 (339)
+.--+|. .+.+|.-. ...++|++++... ... .......|.-=.|-.+. .|+--+ ..|+-
T Consensus 71 sAIMnP~---~~ViALra-----g~~LQiFnletK~--klk----s~~~~e~VvfWkWis~~------~L~lVT~taVyH 130 (365)
T 2xzh_A 71 SAIMNPA---SKVIALKA-----GKTLQIFNIEMKS--KMK----AHTMTDDVTFWKWISLN------TVALVTDNAVYH 130 (365)
T ss_dssp EEEECSS---SSEEEEEE-----TTEEEEEETTTTE--EEE----EEECSSCEEEEEECSSS------EEEEEESSEEEE
T ss_pred eeeeCCC---ccEEEEec-----CCeEEEechHHhh--hhc----ceecCCccEEEEecCCC------eEEEEcCCcEEE
Confidence 3445788 88888877 6899997766543 222 13345678888888765 555555 59999
Q ss_pred EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-------CCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-------DTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
|+++.. ..+.+.+..|..-.- ..|..-..++ +.++++..+- .|.+.+|..+.+ ..+.+.+|...-..+.
T Consensus 131 Ws~~~~-s~P~kvFdR~~~L~~-~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~ 206 (365)
T 2xzh_A 131 WSMEGE-SQPVKMFDRHSSLAG-CQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK 206 (365)
T ss_dssp EESSTT-CCCEEEEECCGGGTT-CEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEEC
T ss_pred EcccCC-CCCceeeecchhccc-ceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEe
Confidence 999763 347777877654332 4566677776 7777665442 367889998655 3556677765544444
Q ss_pred ec----CCcEEEEEeCC---CcEEEEECCCC--c------ceeeEE-eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307 174 WG----GFNVFASVSGD---CSVRVFDLRDK--E------RSTIIY-ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV 237 (339)
Q Consensus 174 ~~----~~~~l~~~~~d---~~i~i~d~~~~--~------~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~ 237 (339)
.. +..+|+.+... +.+++-++... . +...++ .......-..++..++ .-..++.-+.-|. ++
T Consensus 207 ~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~-ih 284 (365)
T 2xzh_A 207 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGY-IH 284 (365)
T ss_dssp CTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSE-EE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcE-EE
Confidence 43 23345544432 58999998544 1 111112 2222334566788886 6677888888888 99
Q ss_pred EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+||+.+ +.++..-+-....|..-+-+.... =++.....|.|.--.++...
T Consensus 285 lyDleT-gt~i~~nrIS~d~iF~ta~~~~~~-Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 285 LYDLET-GTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEETTT-CCEEEEEECCSSCEEEEEEEGGGT-EEEEEETTCEEEEEEECTTT
T ss_pred EEEccc-CcEEEEeccCCCceEEecccCCCC-cEEEEcCCCEEEEEEECccc
Confidence 999998 667776666666666555544432 34455577877777776655
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.96 E-value=0.0024 Score=52.02 Aligned_cols=157 Identities=10% Similarity=0.109 Sum_probs=98.5
Q ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-eeec----cC--CceeEEEe---c-CCcEEEEEe----------
Q 040307 126 ITSFDWAGFDTRRVATCSVDTTCVIWDIDREILET-QLVA----HD--REVYDISW---G-GFNVFASVS---------- 184 (339)
Q Consensus 126 i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~----~~--~~v~~~~~---~-~~~~l~~~~---------- 184 (339)
-.+++|++.++.++++.-..++|..||...+.... .+.. .. ..+..|.| . ++.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34788987445555554479999999997554322 2221 11 13578999 4 455555443
Q ss_pred ---CCCcEEEEECC---CCcceeeEEeCC---C-------CCCCeEEEEEecCCCCeEEEEeeC-CCeEEEEecCCCCCc
Q 040307 185 ---GDCSVRVFDLR---DKERSTIIYENP---V-------QDCPLLRLEWNKADPRFMATVGMD-SNKVVVLDIRFPTNP 247 (339)
Q Consensus 185 ---~d~~i~i~d~~---~~~~~~~~~~~~---~-------~~~~v~~~~~~p~~~~~l~~~~~d-~~~i~i~d~~~~~~~ 247 (339)
.+..|..||+. +++.....-... . .......++..+ +|+..++++.. +. |...+... +.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~-I~rV~pdG--~~ 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPA-IARVSADG--KT 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCE-EEEECTTS--CC
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCe-EEEEeCCC--CE
Confidence 26779999999 565333222100 0 113478999997 88988888887 66 66666543 33
Q ss_pred eEEEec------CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 248 VVVLSK------HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 248 ~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
+..+.. .....+.|+++|++ ++|++....|.+.-+|+..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence 332211 11236799999999 5777666699999999884
No 299
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.95 E-value=0.0042 Score=50.57 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=115.7
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C------cEEEEeec
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D------SLRLWEIH 104 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~------~i~iw~~~ 104 (339)
+.+++.|+.....-..+.+|+.. .........+ .....-.++... ++ .+++.|+ + .+.+||..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~--~~~W~~~~~~--p~~r~~~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~d~~ 85 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFK--EERWHQVAEL--PSRRCRAGMVYM-AG-----LVFAVGGFNGSLRVRTVDSYDPV 85 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETT--TTEEEEECCC--SSCCBSCEEEEE-TT-----EEEEESCBCSSSBCCCEEEEETT
T ss_pred CEEEEECCCCCCCCCcEEEEcCc--CCcEeEcccC--CcccccceEEEE-CC-----EEEEEeCcCCCccccceEEECCC
Confidence 45777777322222456665544 3444331111 111111222222 55 6777776 1 68889988
Q ss_pred CCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCCeeee--eeeccCCceeEEEecCC
Q 040307 105 DDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT-----TCVIWDIDREILET--QLVAHDREVYDISWGGF 177 (339)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~ 177 (339)
+.++..+..+.... .....+.+ ++.+++.|+.++ .+.+||+.+.+-.. .+.. ...-.++...++
T Consensus 86 ~~~W~~~~~~p~~r-----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~ 156 (302)
T 2xn4_A 86 KDQWTSVANMRDRR-----STLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-RRSSVGVGVVGG 156 (302)
T ss_dssp TTEEEEECCCSSCC-----BSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-CCBSCEEEEETT
T ss_pred CCceeeCCCCCccc-----cceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-cccCceEEEECC
Confidence 88755554433221 11222222 567888887653 57789987765221 1211 111122333357
Q ss_pred cEEEEEeCC-------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCCCC
Q 040307 178 NVFASVSGD-------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFPTN 246 (339)
Q Consensus 178 ~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~~~ 246 (339)
.+++.|+.+ ..+.+||+.+.+-... ...+...... +++.. ++.+++.|+.++. .+.+||..+.
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-- 230 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYI-AEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN-- 230 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTTEEEEE-CCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT--
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-CCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCC--
Confidence 777777643 3588999987753222 1121122222 23332 6678888876531 3889998752
Q ss_pred ceEEEecCCC-Ce-eEEEeccCCCCeEEEEeCCC-----cEEEEEecCCC
Q 040307 247 PVVVLSKHEG-SV-NGISWAPLYGRRLCSVADDS-----RALIWEVVGPG 289 (339)
Q Consensus 247 ~~~~~~~~~~-~v-~~~~~~p~~~~~l~~~~~dg-----~v~iwd~~~~~ 289 (339)
....+..... .. .+++. -++ ++++.|+.++ .+.+||+....
T Consensus 231 ~W~~~~~~~~~r~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 231 AWRQVADMNMCRRNAGVCA-VNG-LLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEEECCCSSCCBSCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CEeeCCCCCCccccCeEEE-ECC-EEEEECCcCCCcccccEEEEcCCCCe
Confidence 1222221111 11 11222 244 5777777553 47788776644
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.89 E-value=0.0053 Score=51.02 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=104.5
Q ss_pred EEEEEEcCCCCCEEEEE------------eCCCeEEEEECCCCe-eeee--eec-----cCCceeEEEec---CCc--EE
Q 040307 126 ITSFDWAGFDTRRVATC------------SVDTTCVIWDIDREI-LETQ--LVA-----HDREVYDISWG---GFN--VF 180 (339)
Q Consensus 126 i~~~~~~~~~~~~l~~~------------~~d~~v~i~d~~~~~-~~~~--~~~-----~~~~v~~~~~~---~~~--~l 180 (339)
..++...| ++..++++ ..+|.|.++|+++.. .... +.+ ..-....+.+. ++. ++
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34666666 66555554 268999999987431 1122 222 12345666664 232 44
Q ss_pred EEEeC--CCcEEEEECCCCcceee-EEeC-CCCCCCeEEEEEecCCCCeEEEEee-----------------CCCeEEEE
Q 040307 181 ASVSG--DCSVRVFDLRDKERSTI-IYEN-PVQDCPLLRLEWNKADPRFMATVGM-----------------DSNKVVVL 239 (339)
Q Consensus 181 ~~~~~--d~~i~i~d~~~~~~~~~-~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~-----------------d~~~i~i~ 239 (339)
++-.. +..|.+|++........ +... ...-...+.+.+.+ +|.+.++... .+. |.-+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~-vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSF-VTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEE-EEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccE-EEEE
Confidence 44333 46778887765432222 2111 11234678999997 7777665431 122 4445
Q ss_pred ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEec
Q 040307 240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWS 319 (339)
Q Consensus 240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 319 (339)
|. ++ +..+...-..-+.++|+||+..+.++-+..+.|..|++.... .+.....+......-.++..
T Consensus 209 d~---~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g----------~l~~~~~~~~~g~PDGi~vD 274 (355)
T 3sre_A 209 SP---ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW----------TLTPLRVLSFDTLVDNISVD 274 (355)
T ss_dssp CT---TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS----------CEEEEEEEECSSEEEEEEEC
T ss_pred EC---Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC----------cEecCEEEeCCCCCceEEEe
Confidence 43 22 333333334678999999995444555567899999997533 11111222334567788888
Q ss_pred C-CCCceEEEec
Q 040307 320 P-LELDWIAIAF 330 (339)
Q Consensus 320 p-~~~~l~~~~~ 330 (339)
+ +|..++++..
T Consensus 275 ~e~G~lwva~~~ 286 (355)
T 3sre_A 275 PVTGDLWVGCHP 286 (355)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecC
Confidence 8 5876665543
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.85 E-value=0.0077 Score=49.13 Aligned_cols=209 Identities=7% Similarity=0.005 Sum_probs=122.8
Q ss_pred CCCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCC--CccCCCCEEEEEE---cCCCCCEEEEE
Q 040307 70 HPYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNK--TSEFSSAITSFDW---AGFDTRRVATC 142 (339)
Q Consensus 70 ~~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~---~~~~~~~l~~~ 142 (339)
..-...+++|.+... .++++.- . +|..|+...+....+ .+.+-. ..+ ...+..|.| .| ++.++++.
T Consensus 11 ~~~yPE~~~wd~~~g----~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~-~~~~sGl~~~~~D~-~grL~vv~ 83 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQ----VFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDG-EQQMSGLSLLTHDN-SKRLFAVM 83 (334)
T ss_dssp TTCCCSCEEEETTTT----EEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCC-SEEEEEEEESSSSS-CCEEEEEE
T ss_pred cccCCcCccCcCCCC----EEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCC-cceeeEEEEeccCC-CCcEEEEE
Confidence 344567889988652 4555543 4 999999876542222 332210 000 024579999 57 67777754
Q ss_pred eC-------------CCeEEEEECC---CCeeeeeee--cc-----------CCceeEEEec-CCcEEEEEeCC-CcEEE
Q 040307 143 SV-------------DTTCVIWDID---REILETQLV--AH-----------DREVYDISWG-GFNVFASVSGD-CSVRV 191 (339)
Q Consensus 143 ~~-------------d~~v~i~d~~---~~~~~~~~~--~~-----------~~~v~~~~~~-~~~~l~~~~~d-~~i~i 191 (339)
.. +..|..+|+. +++.+.... .. .....+++.. +++..++++.. +.|..
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence 42 6789999998 776554432 11 1247788888 79999998888 88777
Q ss_pred EECCCCcceeeEE-eC--CCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEe--cC---CCCeeEE-E
Q 040307 192 FDLRDKERSTIIY-EN--PVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS--KH---EGSVNGI-S 262 (339)
Q Consensus 192 ~d~~~~~~~~~~~-~~--~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~--~~---~~~v~~~-~ 262 (339)
++..... ..... .. .......+.|+++| +++.|++....+. +..+|++.+......+. +. -.....+ .
T Consensus 164 V~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~-L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp 240 (334)
T 2p9w_A 164 VSADGKT-VSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRA-LTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVT 240 (334)
T ss_dssp ECTTSCC-EEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSS-EEEEECSSSSCCCEECEESSCCCCCTTEEEEEE
T ss_pred EeCCCCE-EeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCe-EEEEcCCCCcceeecccccCCcccccCcccccc
Confidence 7776553 22222 11 11123367899998 8888877766777 99999885322111121 21 1123343 3
Q ss_pred eccCCCCe-EEEEeCCCcEEEEEecCCC
Q 040307 263 WAPLYGRR-LCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 263 ~~p~~~~~-l~~~~~dg~v~iwd~~~~~ 289 (339)
--.+| ++ |++....+.+.+.+.+...
T Consensus 241 ~~~~G-~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 241 VPVGN-ESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEETT-EEEEEEEETTEEEEEECSSTTS
T ss_pred cccCC-EEEEEEcCCCCEEEEECCCCcc
Confidence 33456 45 5555566655555544433
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.85 E-value=0.016 Score=52.41 Aligned_cols=270 Identities=9% Similarity=0.013 Sum_probs=138.2
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD- 96 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~- 96 (339)
.....|++.|. +..|....+ +..+.|.. .+.++..... +....-...+.|++.+++. +++.+-..
T Consensus 127 ~~P~~Iavdp~---~g~ly~tD~--g~~~~I~r--~~~dG~~~~~---l~~~~~~~P~Glald~~~~----~LY~aD~~~ 192 (619)
T 3s94_A 127 DQPRAIALDPS---SGFMYWTDW--GEVPKIER--AGMDGSSRFI---IINSEIYWPNGLTLDYEEQ----KLYWADAKL 192 (619)
T ss_dssp SCCCCEEEETT---TTEEEEEEC--SSSCEEEE--EETTSCSCEE---EECSSCSSEEEEEEETTTT----EEEEEETTT
T ss_pred CCCceEEEecC---CCeEEEecc--CCCCEEEE--EECCCCceEE---EEeCCCCCCcEEEEEccCC----EEEEEeCCC
Confidence 45778888887 555555552 12345555 4443332222 1122334678999998763 55555443
Q ss_pred -cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec-----------
Q 040307 97 -SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA----------- 164 (339)
Q Consensus 97 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~----------- 164 (339)
.|...+++... ......+.. ....+|++.. + .++.+-...+.|...|..+++....+..
T Consensus 193 ~~I~~~~~dG~~--~~~~~~~~~-----~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~ 263 (619)
T 3s94_A 193 NFIHKSNLDGTN--RQAVVKGSL-----PHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAF 263 (619)
T ss_dssp CCEEEESSSCCE--EC--------------CCCEEESS-S-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEEC
T ss_pred CeEEEecCCCCc--cEEEEeCCC-----CCceEEEEeC-C-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEE
Confidence 88888887653 111111111 2224667653 3 4555545567888888766542222110
Q ss_pred cC--------------CceeEEEec-C--------------------------CcEEEEEeCCCcEEEEECCCCcceeeE
Q 040307 165 HD--------------REVYDISWG-G--------------------------FNVFASVSGDCSVRVFDLRDKERSTII 203 (339)
Q Consensus 165 ~~--------------~~v~~~~~~-~--------------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~ 203 (339)
|. +....+++. + ..+|+.+ ..+.|+..++.........
T Consensus 264 ~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~ 342 (619)
T 3s94_A 264 SQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIV 342 (619)
T ss_dssp CGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEE
T ss_pred ccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeE
Confidence 00 001111111 0 1123322 2345666666654422222
Q ss_pred EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEE
Q 040307 204 YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIW 283 (339)
Q Consensus 204 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iw 283 (339)
... ..-..+..++|++.+ ..|+.+......|+.+++.. ......+...-.....+++.+.+.++.++-+..+.|.+.
T Consensus 343 ~~~-~~l~~~~~ld~d~~~-~~ly~sD~~~~~I~r~~~~g-~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 343 LQL-EDIRHAIAIDYDPVE-GYIYWTDDEVRAIRRSFIDG-SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp CCC-SCCSSEEEEEEETTT-TEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred Eec-cccCccEEEEEEcCC-CeEEEEeCCCCeEEEEEcCC-CccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence 111 112457889999844 44444444333388888764 222222332235677899997654566666677889988
Q ss_pred EecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307 284 EVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 326 (339)
++.... ........-....+|++.|....|+
T Consensus 420 ~~~G~~------------~~~l~~~~l~~P~~iavdp~~G~ly 450 (619)
T 3s94_A 420 RLNGTM------------RKILISEDLEEPRAIVLDPMVGYMY 450 (619)
T ss_dssp ETTSCS------------CEEEECTTCCSEEEEEEETTTTEEE
T ss_pred eCCCCe------------EEEEEECCCCCeeeEEEEcCCCcEE
Confidence 887654 1112222334577888888643444
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.84 E-value=0.0079 Score=48.86 Aligned_cols=232 Identities=13% Similarity=0.053 Sum_probs=115.4
Q ss_pred ccEEEEee-ec-cccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC-C------cEEEEe
Q 040307 32 KSRLAVGS-FL-EDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG-D------SLRLWE 102 (339)
Q Consensus 32 ~~~la~g~-~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~-~------~i~iw~ 102 (339)
+.+++.|+ .. ......+.+|+ ..+........+ .....-.++. ..++ .+++.|+ + .+.+||
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d--~~~~~W~~~~~~--p~~r~~~~~~-~~~~-----~l~v~GG~~~~~~~~~~~~~d 84 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYD--PKTQEWSFLPSI--TRKRRYVASV-SLHD-----RIYVIGGYDGRSRLSSVECLD 84 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEE--TTTTEEEECCCC--SSCCBSCEEE-EETT-----EEEEECCBCSSCBCCCEEEEE
T ss_pred CEEEEEeCccCCCcceeEEEEEc--CCCCeEEeCCCC--ChhhccccEE-EECC-----EEEEEcCCCCCccCceEEEEE
Confidence 56777777 21 11234566654 444444331111 1111112222 2345 6777776 1 688999
Q ss_pred ecCCc---ceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCeee--eeeeccCCceeEE
Q 040307 103 IHDDR---TELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDREILE--TQLVAHDREVYDI 172 (339)
Q Consensus 103 ~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~--~~~~~~~~~v~~~ 172 (339)
..+.+ +..+..+.... ... ++... ++.+++.|+.+ ..+.+||+.+.+-. ..+.. ...-.++
T Consensus 85 ~~~~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~ 155 (301)
T 2vpj_A 85 YTADEDGVWYSVAPMNVRR-----GLA-GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGL 155 (301)
T ss_dssp TTCCTTCCCEEECCCSSCC-----BSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEE
T ss_pred CCCCCCCeeEECCCCCCCc-----cce-eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceE
Confidence 98877 65554433221 111 22222 56788887754 36889998876522 22211 1111222
Q ss_pred EecCCcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCC
Q 040307 173 SWGGFNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRF 243 (339)
Q Consensus 173 ~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~ 243 (339)
...++.+++.|+.+ ..+.+||+.+.+-... ...+........+.+ ++.+++.|+.++. .+.+||+.+
T Consensus 156 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 156 VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCC
Confidence 33367777877754 4588999888753222 122112222222222 5677888876531 389999875
Q ss_pred CCCceEEEecC-CCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 244 PTNPVVVLSKH-EGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 244 ~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
.. ...+... .......+..-++ ++++.|+.+ ..+.+||+....
T Consensus 232 ~~--W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 232 DS--WTTVTSMTTPRCYVGATVLRG-RLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TE--EEEECCCSSCCBSCEEEEETT-EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--EEECCCCCCcccceeEEEECC-EEEEEcCcCCCcccccEEEEcCCCCe
Confidence 21 2222211 1111111122244 577777655 346667766543
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.83 E-value=0.0099 Score=49.66 Aligned_cols=236 Identities=11% Similarity=0.020 Sum_probs=123.5
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCCEEEEEeC---
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTRRVATCSV--- 144 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~--- 144 (339)
.....++|.|++ +++++-.+ .|++++ .+++ +.+..+.. ...+ ......|+++|. ++.+.++-+.
T Consensus 29 ~~P~~ia~~pdG-----~l~V~e~~g~I~~~d-~~G~-~~~~~~~v-~~~g-~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 29 EVPWSIAPLGGG-----RYLVTERPGRLVLIS-PSGK-KLVASFDV-ANVG-EAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp SCEEEEEEEETT-----EEEEEETTTEEEEEC-SSCE-EEEEECCC-CCST-TCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCCeEEEEcCCC-----eEEEEeCCCEEEEEe-CCCc-eEeeccce-eecC-CCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 457899999999 88887765 888886 3333 23332220 0001 146789999982 2444444332
Q ss_pred C----CeEEEEECCCC-------eee-eeeec-cCCceeEEEec-CCcEEEEEeCC-------------CcEEEEECCCC
Q 040307 145 D----TTCVIWDIDRE-------ILE-TQLVA-HDREVYDISWG-GFNVFASVSGD-------------CSVRVFDLRDK 197 (339)
Q Consensus 145 d----~~v~i~d~~~~-------~~~-~~~~~-~~~~v~~~~~~-~~~~l~~~~~d-------------~~i~i~d~~~~ 197 (339)
+ ..|..++.... +.+ ..+.. .......+.|. ++.++++.+.. +.|.-++....
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 3 56777776543 111 11221 11124678898 67766654321 34555554322
Q ss_pred c-------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC--eEEEEecCC---------------CCCceEEEec
Q 040307 198 E-------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN--KVVVLDIRF---------------PTNPVVVLSK 253 (339)
Q Consensus 198 ~-------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--~i~i~d~~~---------------~~~~~~~~~~ 253 (339)
- ........ + .....++|+|.++.++++-..... .|.+..... ...++..+..
T Consensus 180 ~p~~npf~~~~i~a~G--~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYG--H-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp CCTTSSSTTCCEEEEC--C-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCCCcEEEEc--c-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 0 01111111 1 345689999856665554322211 243332111 0123334311
Q ss_pred CCCCeeEEEec-------cCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCce
Q 040307 254 HEGSVNGISWA-------PLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDW 325 (339)
Q Consensus 254 ~~~~v~~~~~~-------p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l 325 (339)
.......++|. .++ .++++.-..+.|...++.... . ........ .....+..+++.|+|..+
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g-~--------~~~~~~~~~~~~~rp~~v~~~pDG~ly 326 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNM-E--------VRKISTFFKNVFGRLRDVVIDDDGGIL 326 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGG-C--------EEEEEEECTTTSCCEEEEEECTTSCEE
T ss_pred CCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCC-c--------ccceeeeccCCCCCeeEEEECCCCcEE
Confidence 23457788884 455 466666666788888887542 0 00111122 224578999999999755
Q ss_pred EEEe
Q 040307 326 IAIA 329 (339)
Q Consensus 326 ~~~~ 329 (339)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5543
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.78 E-value=0.013 Score=49.51 Aligned_cols=240 Identities=7% Similarity=0.104 Sum_probs=155.3
Q ss_pred EEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEE
Q 040307 22 TVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRL 100 (339)
Q Consensus 22 ~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~i 100 (339)
+.--+|. .+.+|.-. ...++|++++... ... .......|.-=.|-.+. .|+--++ .|+-
T Consensus 70 sAIMnP~---~~iiALra-----g~~lQiFnle~K~--klk----s~~~~e~VvfWkWis~~------~l~lVT~taVyH 129 (494)
T 1bpo_A 70 SAIMNPA---SKVIALKA-----GKTLQIFNIEMKS--KMK----AHTMTDDVTFWKWISLN------TVALVTDNAVYH 129 (494)
T ss_dssp EEEECSS---SSCEEEEE-----TTEEEEEETTTTE--EEE----EEECSSCCCEEEEEETT------EEEEECSSEEEE
T ss_pred eeeeCCC---CcEEEEec-----CCeEEEEchHHhh--hhc----ceecCCCceEEEecCCC------eEEEEcCCeeEE
Confidence 4456777 88888877 7899997766543 222 13345678888887765 5666665 9999
Q ss_pred EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-------CCeEEEEECCCCeeeeeeeccCCceeEEE
Q 040307 101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-------DTTCVIWDIDREILETQLVAHDREVYDIS 173 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------d~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 173 (339)
|+++.. ..+...+..|..-.- ..|..-..++ +.++++..+- .|.+.+|..+.+ ..+.+.+|...-..+.
T Consensus 130 Wsi~~~-s~P~kvFdR~~~L~~-~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~ 205 (494)
T 1bpo_A 130 WSMEGE-SQPVKMFDRHSSLAG-CQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK 205 (494)
T ss_dssp EESSSS-CCCEEEEECCGGGTT-CEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEE
T ss_pred ecccCC-CCchhheecchhccc-ceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEe
Confidence 999763 347777877654332 5666777776 7787765442 467889998655 3556677876555555
Q ss_pred ec----CCcEEEEEeCC---CcEEEEECCCC--------cceeeE-EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEE
Q 040307 174 WG----GFNVFASVSGD---CSVRVFDLRDK--------ERSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVV 237 (339)
Q Consensus 174 ~~----~~~~l~~~~~d---~~i~i~d~~~~--------~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~ 237 (339)
.. +..+|+.+... +.+++-++... +....+ +.......-..++..++ .-..++.-+.-|. ++
T Consensus 206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~-i~ 283 (494)
T 1bpo_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGY-IH 283 (494)
T ss_dssp CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSE-EE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCce-EE
Confidence 44 13455555543 78999998654 111111 22222334567888886 6677778888888 99
Q ss_pred EEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 238 VLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 238 i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+||+.+ +.++..-+-....|..-+-+.... =++.....|.|.--.++...
T Consensus 284 lyDleT-gt~i~~nrIs~~~iF~t~~~~~~~-Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 284 LYDLET-GTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEETTT-CCEEEEEECCSSCEEEEEEETTTT-EEEEEETTCEEEEEEECTTT
T ss_pred EEeccc-ceeeeeecccCCceEEecccCCCC-cEEEEccCceEEEEEEcccc
Confidence 999998 666766665566666555554432 34455577877777666654
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.76 E-value=0.013 Score=48.91 Aligned_cols=233 Identities=12% Similarity=0.059 Sum_probs=115.6
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeE--eecCCCCceEEEEcCC---CCCCCCCeEE
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRL--IFDHPYTPTNIAFFPS---EETLNPDIVA 92 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~---~~~~~~~~la 92 (339)
.....++|.|+ +.++++ . ..+.|.+++ + ........+ ..........|+|+|+ +. .+++
T Consensus 31 ~~P~~ia~~pd---G~l~V~-e----~~g~I~~i~-~---g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g----~lYv 94 (352)
T 2ism_A 31 EVPWALAFLPD---GGMLIA-E----RPGRIRLFR-E---GRLSTYAELSVYHRGESGLLGLALHPRFPQEP----YVYA 94 (352)
T ss_dssp SCEEEEEECTT---SCEEEE-E----TTTEEEEEE-T---TEEEEEEECCCCCSTTCSEEEEEECTTTTTSC----EEEE
T ss_pred CCceEEEEcCC---CeEEEE-e----CCCeEEEEE-C---CCccEeecceEeecCCCCceeEEECCCCCCCC----EEEE
Confidence 45779999999 885555 4 369999865 2 222110011 0122456899999998 31 5555
Q ss_pred EeC-------CcEEEEeecCCcce----eEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-------------CCeE
Q 040307 93 TSG-------DSLRLWEIHDDRTE----LKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-------------DTTC 148 (339)
Q Consensus 93 ~~~-------~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------d~~v 148 (339)
+-. ..|..++....... ....+....... .....++|.| ++.+.++.+. .|.|
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~--h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I 171 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGL--HSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKI 171 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCC--CCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEE
T ss_pred EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCC--cCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEE
Confidence 543 35667776644211 111122101111 2235899998 8877666432 2566
Q ss_pred EEEECCCC------------eeeeee-eccCCceeEEEecC--CcEEEEEeCCCcE------EEEECCCCcc--------
Q 040307 149 VIWDIDRE------------ILETQL-VAHDREVYDISWGG--FNVFASVSGDCSV------RVFDLRDKER-------- 199 (339)
Q Consensus 149 ~i~d~~~~------------~~~~~~-~~~~~~v~~~~~~~--~~~l~~~~~d~~i------~i~d~~~~~~-------- 199 (339)
.-++.... .....+ .++. ....++|++ +.++++-.....+ .+.-+..+..
T Consensus 172 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g 250 (352)
T 2ism_A 172 LRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVG 250 (352)
T ss_dssp EEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCS
T ss_pred EEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccC
Confidence 66665420 011111 1232 346778883 4444443333321 1222222210
Q ss_pred -------eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-----eEEEecCCCCeeEEEeccCC
Q 040307 200 -------STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-----VVVLSKHEGSVNGISWAPLY 267 (339)
Q Consensus 200 -------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-----~~~~~~~~~~v~~~~~~p~~ 267 (339)
........ +......++|. ++.++++.-..+. |...++...... ...+......+..+++.|+|
T Consensus 251 ~~~~~~~~~p~~~~~-~~~ap~G~~~~--~G~l~v~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 326 (352)
T 2ism_A 251 RGNDPRYRDPLYFWP-QGFPPGNLAFF--RGDLYVAGLRGQA-LLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG 326 (352)
T ss_dssp CCCCTTSCCCSEECT-TCCCEEEEEEE--TTEEEEEETTTTE-EEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS
T ss_pred CCCCCCCcCCeEecC-CCCCCcceEEE--CCEEEEEECCCCE-EEEEEECCCCcceeecchheecccCCCeeEEEECCCC
Confidence 00001111 12345677773 5665554433344 777777643321 12222223578999999999
Q ss_pred CCeEEEEe
Q 040307 268 GRRLCSVA 275 (339)
Q Consensus 268 ~~~l~~~~ 275 (339)
. ++++..
T Consensus 327 ~-lyv~~~ 333 (352)
T 2ism_A 327 A-LYVTTS 333 (352)
T ss_dssp C-EEEEEC
T ss_pred c-EEEEEe
Confidence 4 555543
No 307
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.74 E-value=0.022 Score=51.03 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=36.0
Q ss_pred CcEEEEECCCCcceeeEEeCCCCC-------CCeEEEEEecCCC---CeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 187 CSVRVFDLRDKERSTIIYENPVQD-------CPLLRLEWNKADP---RFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 187 ~~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~---~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
+.|..+|.++++..=. +....+. ....-+.....++ ..++.++.++. ++++|.++ ++++....
T Consensus 291 ~~v~AlD~~TG~~~W~-~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~t-G~~lw~~~ 363 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWF-YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGF-FYVVDRSN-GKLQNAFP 363 (582)
T ss_dssp SEEEEECTTTCCEEEE-EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSE-EEEEETTT-CCEEEEEE
T ss_pred ceEEEEeCCCCCEEEE-EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCce-EEEEECCC-CCEecccc
Confidence 5799999999884433 2221121 1111122210255 36777888888 99999877 55554443
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.69 E-value=0.011 Score=48.09 Aligned_cols=228 Identities=11% Similarity=0.035 Sum_probs=115.4
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeC------CcEEEEeecC
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSG------DSLRLWEIHD 105 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~------~~i~iw~~~~ 105 (339)
+.+++.|+.. ..+.+.+|| ...........+ .....-.++.. -++ .+++.|+ +.+.+||..+
T Consensus 12 ~~l~~~GG~~--~~~~~~~~d--~~~~~W~~~~~~--p~~r~~~~~~~-~~~-----~lyv~GG~~~~~~~~~~~~d~~~ 79 (306)
T 3ii7_A 12 DYRIALFGGS--QPQSCRYFN--PKDYSWTDIRCP--FEKRRDAACVF-WDN-----VVYILGGSQLFPIKRMDCYNVVK 79 (306)
T ss_dssp CEEEEEECCS--STTSEEEEE--TTTTEEEECCCC--SCCCBSCEEEE-ETT-----EEEEECCBSSSBCCEEEEEETTT
T ss_pred ceEEEEeCCC--CCceEEEec--CCCCCEecCCCC--CcccceeEEEE-ECC-----EEEEEeCCCCCCcceEEEEeCCC
Confidence 4466677621 145666644 444444431122 11111122222 355 6777776 2788899988
Q ss_pred CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCCCeeee--eeeccCCceeEEEecCC
Q 040307 106 DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD------TTCVIWDIDREILET--QLVAHDREVYDISWGGF 177 (339)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~ 177 (339)
.++..+..+.... .....+.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+... ..-.++...++
T Consensus 80 ~~W~~~~~~p~~r-----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~ 150 (306)
T 3ii7_A 80 DSWYSKLGPPTPR-----DSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGMVEANG 150 (306)
T ss_dssp TEEEEEECCSSCC-----BSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETT
T ss_pred CeEEECCCCCccc-----cceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-cceeEEEEECC
Confidence 8765554433221 11122222 56788888765 468899998765221 11111 11122233357
Q ss_pred cEEEEEeC---------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEEecCCC
Q 040307 178 NVFASVSG---------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVLDIRFP 244 (339)
Q Consensus 178 ~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~d~~~~ 244 (339)
.+++.|+. -..+.+||+.+.+-... ...+..... .+++.. ++++++.|+.++. .+.+||....
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL-CPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCCCeEEEC-CCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 77777764 34588999988753222 122111122 223332 5677777776431 2889998752
Q ss_pred CCceEEEec---CCCCeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 245 TNPVVVLSK---HEGSVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 245 ~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
. -..+.. .......+.+ ++ ++++.|+.+ ..+.+||+....
T Consensus 227 ~--W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 227 E--WKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp E--EEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred c--EEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 1 222211 1111222222 44 577788754 457777776644
No 309
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.65 E-value=0.01 Score=48.42 Aligned_cols=231 Identities=13% Similarity=0.058 Sum_probs=113.2
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-----------cEEE
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-----------SLRL 100 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-----------~i~i 100 (339)
+.+++.|+.....-..+.+|+ ...........+ .....-.++... ++ .+++.|+. .+.+
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d--~~~~~W~~~~~~--p~~r~~~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~~~~ 94 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYN--PSNGTWLRLADL--QVPRSGLAGCVV-GG-----LLYAVGGRNNSPDGNTDSSALDC 94 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEE--TTTTEEEECCCC--SSCCBSCEEEEE-TT-----EEEEECCEEEETTEEEECCCEEE
T ss_pred CEEEEEeCcCCCCcceEEEEc--CCCCeEeECCCC--CcccccceEEEE-CC-----EEEEECCCcCCCCCCeecceEEE
Confidence 667788874222234566644 444444431111 111111223322 45 67766651 5888
Q ss_pred EeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCeeee--eeeccCCceeEEE
Q 040307 101 WEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDREILET--QLVAHDREVYDIS 173 (339)
Q Consensus 101 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~--~~~~~~~~v~~~~ 173 (339)
||+.+.++..+..+.... .....+.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+...... .++.
T Consensus 95 ~d~~~~~W~~~~~~p~~r-----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~ 165 (308)
T 1zgk_A 95 YNPMTNQWSPCAPMSVPR-----NRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVA 165 (308)
T ss_dssp EETTTTEEEECCCCSSCC-----BTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE
T ss_pred ECCCCCeEeECCCCCcCc-----cccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEE
Confidence 888887655443333211 11222222 56777777643 468889987765221 11111111 1222
Q ss_pred ecCCcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCC----CeEEEEecCCC
Q 040307 174 WGGFNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDS----NKVVVLDIRFP 244 (339)
Q Consensus 174 ~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~----~~i~i~d~~~~ 244 (339)
..++.+++.|+.+ ..+.+||+.+.+-... ...+...... +++.. ++.+++.|+.++ ..+.+||+...
T Consensus 166 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 166 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGA-GVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCCCccccc-eEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 3367777777754 4588999887652221 1111122222 22332 667777777652 13899998752
Q ss_pred CCceEEEecCCC--CeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 245 TNPVVVLSKHEG--SVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 245 ~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
. ...+..... .-.+++. -++ ++++.|+.+ ..+.+||+....
T Consensus 242 ~--W~~~~~~p~~r~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 242 T--WTFVAPMKHRRSALGITV-HQG-RIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp E--EEECCCCSSCCBSCEEEE-ETT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred c--EEECCCCCCCccceEEEE-ECC-EEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 222211111 1112222 244 577777644 346666665543
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.63 E-value=0.018 Score=46.89 Aligned_cols=183 Identities=10% Similarity=0.021 Sum_probs=97.3
Q ss_pred CeEEEeCC----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC----CeEEEEECCCCeee-
Q 040307 89 DIVATSGD----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD----TTCVIWDIDREILE- 159 (339)
Q Consensus 89 ~~la~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~- 159 (339)
.+++.|+. .+.+||..+.++..+..+.... .....+.+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKR-----RDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCC-----BSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCccc-----ceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence 46666652 8999999988755544333221 12222222 56788888765 67889999877522
Q ss_pred -eeeeccCCceeEEEecCCcEEEEEeCC------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC
Q 040307 160 -TQLVAHDREVYDISWGGFNVFASVSGD------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD 232 (339)
Q Consensus 160 -~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 232 (339)
..+...... .++...++.+++.|+.+ ..+.+||+.+.+-... ...+....... ++.. ++++++.|+.+
T Consensus 85 ~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~-~~~~--~~~iyv~GG~~ 159 (306)
T 3ii7_A 85 KLGPPTPRDS-LAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHG-MVEA--NGLIYVCGGSL 159 (306)
T ss_dssp EECCSSCCBS-CEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCE-EEEE--TTEEEEECCEE
T ss_pred CCCCCccccc-eeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeE-EEEE--CCEEEEECCCC
Confidence 122111111 12222367788888765 4688999988753222 22211112222 2222 56777777643
Q ss_pred ---------CCeEEEEecCCCCCceEEEecCCC-C-eeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 233 ---------SNKVVVLDIRFPTNPVVVLSKHEG-S-VNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 233 ---------~~~i~i~d~~~~~~~~~~~~~~~~-~-v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
.. +.+||..+. ....+..... . -.++... ++ ++++.|+.+ ..+.+||+....
T Consensus 160 ~~~~~~~~~~~-~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 160 GNNVSGRVLNS-CEVYDPATE--TWTELCPMIEARKNHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp SCTTTCEECCC-EEEEETTTT--EEEEECCCSSCCBSCEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCCcccccce-EEEeCCCCC--eEEECCCccchhhcceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 33 888998762 1222221111 1 1122222 44 577777643 357788877643
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=0.029 Score=48.77 Aligned_cols=245 Identities=10% Similarity=-0.008 Sum_probs=135.3
Q ss_pred CeeEEEeee-cCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeec--CCCCceEEEE-------cCCCCCCCC
Q 040307 19 PISTVAWSV-RHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFD--HPYTPTNIAF-------FPSEETLNP 88 (339)
Q Consensus 19 ~v~~i~~sp-~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~-------~~~~~~~~~ 88 (339)
....|+|.| + ...|.++.. ..+.|++ ++.++..+.. ....+ .......++| ++++
T Consensus 140 ~p~~la~dp~~---~~~Lyv~~~---~~~~i~~--ID~~~~~v~~--l~~~~~~~~~~p~~ia~~~~~~~~d~~G----- 204 (496)
T 3kya_A 140 DNGRLAFDPLN---KDHLYICYD---GHKAIQL--IDLKNRMLSS--PLNINTIPTNRIRSIAFNKKIEGYADEA----- 204 (496)
T ss_dssp SEEEEEEETTE---EEEEEEEEE---TEEEEEE--EETTTTEEEE--EECCTTSSCSBEEEEEECCCBTTTBCTT-----
T ss_pred CCCEEEEccCC---CCEEEEEEC---CCCeEEE--EECCCCEEEE--EEccCccccCCCcEEEEeecccccCCCC-----
Confidence 467889998 4 444555441 3455666 6666655553 11111 1235899999 9999
Q ss_pred C-eEEEeCC--------cEEEEeecC-Cccee---EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC-
Q 040307 89 D-IVATSGD--------SLRLWEIHD-DRTEL---KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID- 154 (339)
Q Consensus 89 ~-~la~~~~--------~i~iw~~~~-~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~- 154 (339)
+ ++++... .|.+.+... +.+.. ...+... .....++.+|.++.++++-..++.|..+|+.
T Consensus 205 ~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~ 278 (496)
T 3kya_A 205 EYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY------KQCNGATIHPINGELYFNSYEKGQVFRLDLVD 278 (496)
T ss_dssp CEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE------SCCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred CEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC------CCceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence 6 5555432 255665333 22210 0122211 2345788898556666677778899999987
Q ss_pred ------CCee-----------eeee-e-ccCCceeEEEec-CCcE-EEEEeCCCcEEEEECCCCcc----eeeEEeCCCC
Q 040307 155 ------REIL-----------ETQL-V-AHDREVYDISWG-GFNV-FASVSGDCSVRVFDLRDKER----STIIYENPVQ 209 (339)
Q Consensus 155 ------~~~~-----------~~~~-~-~~~~~v~~~~~~-~~~~-l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~ 209 (339)
++.. ...+ . ......+.++|+ +++. +++-.....|+.+|...... +..+......
T Consensus 279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~ 358 (496)
T 3kya_A 279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ 358 (496)
T ss_dssp HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence 4443 1121 1 123346789999 6774 44545667888866543221 1111111000
Q ss_pred C------------CCeE-EEEEec------CCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCC---------------
Q 040307 210 D------------CPLL-RLEWNK------ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHE--------------- 255 (339)
Q Consensus 210 ~------------~~v~-~~~~~p------~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~--------------- 255 (339)
. .... .++... .++.++++-..+.. |+.++.. + .+.++.+..
T Consensus 359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~~~--G-~v~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC-VRKVTPE--G-IVSTYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE-EEEECTT--C-BEEEEEESCTTHHHHHSCSCCCCC
T ss_pred CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE-EEEEeCC--C-CEEEEecccccccccCccccccCC
Confidence 0 1234 344431 14555555444555 9999832 3 355554320
Q ss_pred ---------CCeeEEEeccC-CCCeEEEEeCCCcEEEEEecCCC
Q 040307 256 ---------GSVNGISWAPL-YGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 256 ---------~~v~~~~~~p~-~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
.....|+++++ + .++++=..+.+|+.++++...
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g-~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKE-MFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTT-EEEEEETTTTEEEEEEECCCC
T ss_pred CCchhhhhcCCCcEEEEECCCC-EEEEEeCCCCEEEEEECCCCc
Confidence 13568999997 6 466666677889999988765
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.61 E-value=0.015 Score=47.14 Aligned_cols=184 Identities=10% Similarity=0.003 Sum_probs=96.6
Q ss_pred CeEEEeC----C----cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCC
Q 040307 89 DIVATSG----D----SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDR 155 (339)
Q Consensus 89 ~~la~~~----~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~ 155 (339)
.+++.|+ + .+.+||+.+.++..+..+.... ... ++... ++.+++.|+.+ ..+.+||+.+
T Consensus 16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~ 87 (301)
T 2vpj_A 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR-----RYV-ASVSL--HDRIYVIGGYDGRSRLSSVECLDYTA 87 (301)
T ss_dssp EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC-----BSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTC
T ss_pred EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh-----ccc-cEEEE--CCEEEEEcCCCCCccCceEEEEECCC
Confidence 5777766 1 7889998887654443332211 111 22222 56788888765 4688999877
Q ss_pred Ce---e--eeeeeccCCceeEEEecCCcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCe
Q 040307 156 EI---L--ETQLVAHDREVYDISWGGFNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRF 225 (339)
Q Consensus 156 ~~---~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 225 (339)
.+ - +..+...... .++...++.+++.|+.+ ..+.+||+.+.+-... ...+...... +++.. ++++
T Consensus 88 ~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~i 162 (301)
T 2vpj_A 88 DEDGVWYSVAPMNVRRGL-AGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSML-GDMQTAREGA-GLVVA--SGVI 162 (301)
T ss_dssp CTTCCCEEECCCSSCCBS-CEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE-EECSSCCBSC-EEEEE--TTEE
T ss_pred CCCCeeEECCCCCCCccc-eeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEEC-CCCCCCcccc-eEEEE--CCEE
Confidence 65 1 1112111111 22223367777777654 3588899887763322 2222222222 22222 6677
Q ss_pred EEEEeeCCC----eEEEEecCCCCCceEEEecCCCC-e-eEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 226 MATVGMDSN----KVVVLDIRFPTNPVVVLSKHEGS-V-NGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 226 l~~~~~d~~----~i~i~d~~~~~~~~~~~~~~~~~-v-~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
++.|+.++. .+.+||..+.. ...+.....+ . .++.. -++ ++++.|+.+ ..+.+||+.+..
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVAL-LND-HIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEE-ECC-EEEEEeCCCCCcccceEEEEeCCCCc
Confidence 777776531 38899987521 2222211111 1 11222 244 577777754 468888887654
No 313
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.41 E-value=0.037 Score=45.24 Aligned_cols=185 Identities=10% Similarity=0.000 Sum_probs=94.4
Q ss_pred CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-----C------CeEEEEECCCCe
Q 040307 89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-----D------TTCVIWDIDREI 157 (339)
Q Consensus 89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d------~~v~i~d~~~~~ 157 (339)
.+++.|++.+.+||..++++.. ..+..... ..-.+++. .++.+++.|+. . ..+.+||..+.+
T Consensus 6 ~l~~~GG~~~~~yd~~~~~W~~-~~~~~p~~----r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 6 LIFMISEEGAVAYDPAANECYC-ASLSSQVP----KNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEEETTEEEEEETTTTEEEE-EECCCCSC----SSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEEcCCceEEECCCCCeEec-CCCCCCCC----ccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 4566677799999999987543 22222110 12223333 26788888874 1 137788988765
Q ss_pred eeeeeeccCCc--eeEEEecCCcEEEEEeCC--------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEE
Q 040307 158 LETQLVAHDRE--VYDISWGGFNVFASVSGD--------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMA 227 (339)
Q Consensus 158 ~~~~~~~~~~~--v~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 227 (339)
- ..+.....+ -.+++..++.+++.|+.+ ..+.+||+.+.+-... ...+....... ++.. ++++++
T Consensus 79 W-~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~-~~~~--~~~iyv 153 (315)
T 4asc_A 79 W-LGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYVVYGHT-VLSH--MDLVYV 153 (315)
T ss_dssp E-EECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCSSCCBSCE-EEEE--TTEEEE
T ss_pred E-EECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCCCccccee-EEEE--CCEEEE
Confidence 2 222111111 112223357777777742 4588999987652211 11111222222 2222 667778
Q ss_pred EEee-CC----CeEEEEecCCCCCceEEEecCC-CCe-eEEEeccCCCCeEEEEeCCC-----cEEEEEecCCC
Q 040307 228 TVGM-DS----NKVVVLDIRFPTNPVVVLSKHE-GSV-NGISWAPLYGRRLCSVADDS-----RALIWEVVGPG 289 (339)
Q Consensus 228 ~~~~-d~----~~i~i~d~~~~~~~~~~~~~~~-~~v-~~~~~~p~~~~~l~~~~~dg-----~v~iwd~~~~~ 289 (339)
.|+. ++ ..+.+||..+.. -..+.... ... .+++. -++ ++++.|+.++ .+.+||+.+..
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATV-HDG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEE-ECC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 8876 21 138899987521 12221111 111 12222 244 5777777554 46777776543
No 314
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.41 E-value=0.041 Score=45.81 Aligned_cols=234 Identities=9% Similarity=-0.018 Sum_probs=111.6
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeec-CCCCceEEEEcCCCCCCCCCeEEEeCC------------cE
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFD-HPYTPTNIAFFPSEETLNPDIVATSGD------------SL 98 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~la~~~~------------~i 98 (339)
+.+++.|+. ..+.+.+|+.............+ . ....-.+++.. ++ ++++.|+. .+
T Consensus 20 ~~iyv~GG~---~~~~~~~~d~~~~~~~W~~~~~~--p~~~R~~~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~~v 88 (357)
T 2uvk_A 20 DTVYIGLGS---AGTAWYKLDTQAKDKKWTALAAF--PGGPRDQATSAFI-DG-----NLYVFGGIGKNSEGLTQVFNDV 88 (357)
T ss_dssp TEEEEECGG---GTTCEEEEETTSSSCCEEECCCC--TTCCCBSCEEEEE-TT-----EEEEECCEEECTTSCEEECCCE
T ss_pred CEEEEEeCc---CCCeEEEEccccCCCCeeECCCC--CCCcCccceEEEE-CC-----EEEEEcCCCCCCCccceeeccE
Confidence 777788874 34567776655323444431121 1 11111222222 45 66666542 58
Q ss_pred EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC---------------------------------
Q 040307 99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--------------------------------- 145 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------------------------- 145 (339)
.+||+.+.++..+..+.... . .....+.+ ++++++.|+.+
T Consensus 89 ~~yd~~~~~W~~~~~~~p~~---r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 89 HKYNPKTNSWVKLMSHAPMG---M-AGHVTFVH---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EEEETTTTEEEECSCCCSSC---C-SSEEEEEE---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred EEEeCCCCcEEECCCCCCcc---c-ccceEEEE---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 88898888755544433111 0 12222222 67888888864
Q ss_pred ------CeEEEEECCCCee--eeeeeccCCceeEEEecCCcEEEEEeC------CCcEEEEEC--CCCcceeeEEeCCCC
Q 040307 146 ------TTCVIWDIDREIL--ETQLVAHDREVYDISWGGFNVFASVSG------DCSVRVFDL--RDKERSTIIYENPVQ 209 (339)
Q Consensus 146 ------~~v~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~ 209 (339)
..+.+||+.+.+- +..+......-.++...++.+++.|+. ...+..||+ .+.+- ..+...+..
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~ 240 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSP 240 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTT
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCC
Confidence 5789999987652 222211111112334446777777764 345777877 43331 111111111
Q ss_pred CCC-eEEEEEecCCCCeEEEEeeCC---------------------CeEEEEecCCCC-CceEEEecCCCCeeEEEeccC
Q 040307 210 DCP-LLRLEWNKADPRFMATVGMDS---------------------NKVVVLDIRFPT-NPVVVLSKHEGSVNGISWAPL 266 (339)
Q Consensus 210 ~~~-v~~~~~~p~~~~~l~~~~~d~---------------------~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~p~ 266 (339)
... -.+++.. ++.+++.|+.+. ..+.+||+.... ..+..+.. ......+..-+
T Consensus 241 ~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~ 316 (357)
T 2uvk_A 241 DGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ--GRAYGVSLPWN 316 (357)
T ss_dssp TCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS--CCBSSEEEEET
T ss_pred cccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC--CcccceeEEeC
Confidence 111 1123332 667777777431 127889987522 11112221 11112223345
Q ss_pred CCCeEEEEeCCC------cEEEEEecCCC
Q 040307 267 YGRRLCSVADDS------RALIWEVVGPG 289 (339)
Q Consensus 267 ~~~~l~~~~~dg------~v~iwd~~~~~ 289 (339)
+ ++++.|+.++ .|.+++++..+
T Consensus 317 ~-~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 317 N-SLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp T-EEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred C-EEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 5 5778887542 35555776655
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.41 E-value=0.037 Score=46.70 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=93.5
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecC--C-CCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDH--P-YTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR 107 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~-~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~ 107 (339)
+..++++. ++.||..++..+. .++ .+...+ . ..|..+..+|+| ++||..+. .|.|-.+..+.
T Consensus 32 ~t~i~~a~-----~n~iR~~~i~~~~-~Yk---~L~~~~~i~f~~i~qlvlSpsG-----~lLAl~g~~~V~Vv~LP~~~ 97 (452)
T 3pbp_A 32 GTRIVFIQ-----DNIIRWYNVLTDS-LYH---SLNFSRHLVLDDTFHVISSTSG-----DLLCLFNDNEIFVMEVPWGY 97 (452)
T ss_dssp TTEEEEEE-----TTEEEEEETTTCS-SCE---EEECTTTCCCCTTCEEEECTTS-----SEEEEECSSEEEEEECCTTC
T ss_pred CCEEEEEE-----CCEEEEEECCCCC-cce---EEecCcccccCceeEEEECCCC-----CEEEEecCCeEEEEEecCcc
Confidence 66777777 7899997776543 222 232332 2 368899999999 89999987 99998887432
Q ss_pred c----------eeEEEeecCCCc-cCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCe--eeeeee---------
Q 040307 108 T----------ELKSLLNSNKTS-EFSSAITSFDWAGF--DTRRVATCSVDTTCVIWDIDREI--LETQLV--------- 163 (339)
Q Consensus 108 ~----------~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~--------- 163 (339)
. .....+.-.... ....+|..+.|+|. .+..|++-..|+.|++||+.... +. .++
T Consensus 98 ~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d 176 (452)
T 3pbp_A 98 SNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLD 176 (452)
T ss_dssp SCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESC
T ss_pred ccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCC
Confidence 0 111223221100 01268999999984 34589999999999999997522 22 221
Q ss_pred ccCCceeEEEec-CCcEEEEEe--CCCcEEEE
Q 040307 164 AHDREVYDISWG-GFNVFASVS--GDCSVRVF 192 (339)
Q Consensus 164 ~~~~~v~~~~~~-~~~~l~~~~--~d~~i~i~ 192 (339)
.....|.+++|. ++-.|...+ ..|.|+-.
T Consensus 177 ~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 177 ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 122568889998 555555544 66766643
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.39 E-value=0.044 Score=45.55 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=79.4
Q ss_pred CCCcEEEEECCCC--cceeeEEeC---CCCCCCeEEEEEecC-CCC-eEEEEeeC--CCeEEEEecCCCCCceE---EEe
Q 040307 185 GDCSVRVFDLRDK--ERSTIIYEN---PVQDCPLLRLEWNKA-DPR-FMATVGMD--SNKVVVLDIRFPTNPVV---VLS 252 (339)
Q Consensus 185 ~d~~i~i~d~~~~--~~~~~~~~~---~~~~~~v~~~~~~p~-~~~-~l~~~~~d--~~~i~i~d~~~~~~~~~---~~~ 252 (339)
.+|.|.++|+.+. +........ .........+.+.++ ++. +|+++... +..+.+|++........ .+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999999843 222221221 112346778887652 333 44444332 33488988876433222 222
Q ss_pred cC-CCCeeEEEeccCCCCeEEEEe---CC------------CcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEE
Q 040307 253 KH-EGSVNGISWAPLYGRRLCSVA---DD------------SRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVV 316 (339)
Q Consensus 253 ~~-~~~v~~~~~~p~~~~~l~~~~---~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 316 (339)
+. -...+.+.+.++| .+.++.. .| ..=.+|.+...+ .......-...+.+
T Consensus 161 g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-------------~~~~~~~l~~pNGi 226 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-------------VRVVAEGFDFANGI 226 (355)
T ss_dssp CTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-------------CEEEEEEESSEEEE
T ss_pred cCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECCe-------------EEEeecCCcccCcc
Confidence 21 2357899999998 4666654 11 223444444433 22233334457899
Q ss_pred EecCCCCceEEE-ecCCeEEEEeC
Q 040307 317 RWSPLELDWIAI-AFVNKLQLLKV 339 (339)
Q Consensus 317 ~~~p~~~~l~~~-~~d~~v~~w~v 339 (339)
+|+||++.++.+ +..+.|..|++
T Consensus 227 a~spDg~~lYvadt~~~~I~~~~~ 250 (355)
T 3sre_A 227 NISPDGKYVYIAELLAHKIHVYEK 250 (355)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEE
T ss_pred eECCCCCEEEEEeCCCCeEEEEEE
Confidence 999999876644 56778887763
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.38 E-value=0.041 Score=44.96 Aligned_cols=133 Identities=11% Similarity=-0.033 Sum_probs=70.9
Q ss_pred EEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC--------CeEEEEECCCCee--eeeeeccCC
Q 040307 98 LRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD--------TTCVIWDIDREIL--ETQLVAHDR 167 (339)
Q Consensus 98 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~--~~~~~~~~~ 167 (339)
+.+||..+.++..+..+.... ... +++.. ++.+++.|+.+ ..+.+||+.+.+- +..+....
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r- 139 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPR-----CLF-GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV- 139 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCE-----ESC-EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC-
T ss_pred eEEecCCCCeEEECCCCCcch-----hce-eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc-
Confidence 778888877654443332211 111 22222 56777777742 4688999987652 11121111
Q ss_pred ceeEEEecCCcEEEEEeC-C-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEE
Q 040307 168 EVYDISWGGFNVFASVSG-D-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVV 237 (339)
Q Consensus 168 ~v~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~ 237 (339)
.-.++...++.+++.|+. + ..+.+||+.+.+-... ...+........+.+ ++++++.|+.++. .+.
T Consensus 140 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 140 YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL-APMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEE
T ss_pred cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC-CCCCCchhceEEEEE---CCEEEEEeccCCCCccceEE
Confidence 112233335777788776 2 4688999987752221 111111122222222 6678888877653 388
Q ss_pred EEecCC
Q 040307 238 VLDIRF 243 (339)
Q Consensus 238 i~d~~~ 243 (339)
+||..+
T Consensus 216 ~yd~~~ 221 (315)
T 4asc_A 216 VYSITD 221 (315)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 888875
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.35 E-value=0.042 Score=44.52 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=95.0
Q ss_pred CeEEEeC------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCe
Q 040307 89 DIVATSG------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDREI 157 (339)
Q Consensus 89 ~~la~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~ 157 (339)
.+++.|+ +.+..||+.+.++..+..+.... ..- +++.. ++.+++.|+.+ ..+.+||..+.+
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 88 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR-----CRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ 88 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC-----BSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc-----ccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCc
Confidence 5666665 16888998887654443332211 111 22222 56788888755 358899988765
Q ss_pred ee--eeeeccCCceeEEEecCCcEEEEEeCCC-----cEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe
Q 040307 158 LE--TQLVAHDREVYDISWGGFNVFASVSGDC-----SVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVG 230 (339)
Q Consensus 158 ~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 230 (339)
-. ..+...... .+++..++.+++.|+.++ .+.+||+.+.+-... ...+...... +++.. ++++++.|+
T Consensus 89 W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG 163 (302)
T 2xn4_A 89 WTSVANMRDRRST-LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSV-GVGVV--GGLLYAVGG 163 (302)
T ss_dssp EEEECCCSSCCBS-CEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSC-EEEEE--TTEEEEECC
T ss_pred eeeCCCCCccccc-eEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCc-eEEEE--CCEEEEEeC
Confidence 21 112111111 223333677888887653 477889887653222 1221122222 22332 567777776
Q ss_pred eCCC------eEEEEecCCCCCceEEEecCCC--CeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 231 MDSN------KVVVLDIRFPTNPVVVLSKHEG--SVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 231 ~d~~------~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
.++. .+.+||..... -..+..... .-.+++. -++ ++++.|+.+ ..+.+||+.+..
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGV-LNN-LLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETT-EEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEE-ECC-EEEEECCCCCCcccceEEEEeCCCCC
Confidence 5321 28889987521 222211111 1112222 244 577777754 367888876644
No 319
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.33 E-value=0.049 Score=44.85 Aligned_cols=182 Identities=12% Similarity=0.146 Sum_probs=107.3
Q ss_pred eEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCC---EEEEEeC---CCeEEEEEC--CCCe
Q 040307 90 IVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTR---RVATCSV---DTTCVIWDI--DREI 157 (339)
Q Consensus 90 ~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~---~l~~~~~---d~~v~i~d~--~~~~ 157 (339)
+|++.-. .+.+||+ +++ .+..+.. +.++.+..-|. .++ ++++... +++|.+|++ .+++
T Consensus 43 ii~t~k~~gL~Vydl-~G~--~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGK--MLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp EEEEETTTEEEEEET-TSC--EEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred EEEEcCCCCEEEEcC-CCc--EEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3334334 9999999 554 5555654 45666666540 111 2333333 578999977 3333
Q ss_pred eeeeeec------cC-CceeEEEe--cC--Cc-EEEEEeCCCcEEEEECCC---Ccc---eeeEEeCCCCCCCeEEEEEe
Q 040307 158 LETQLVA------HD-REVYDISW--GG--FN-VFASVSGDCSVRVFDLRD---KER---STIIYENPVQDCPLLRLEWN 219 (339)
Q Consensus 158 ~~~~~~~------~~-~~v~~~~~--~~--~~-~l~~~~~d~~i~i~d~~~---~~~---~~~~~~~~~~~~~v~~~~~~ 219 (339)
+..+.. .. ..+..+++ ++ +. ++++...+|.+..|++.. +.. ....+.. ...+-.+...
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvD 188 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAAD 188 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEE
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEc
Confidence 444411 11 45667777 42 33 677888889999999843 211 1122222 3578889998
Q ss_pred cCCCCeEEEEeeCCCeEEEEecCCCC----CceEEEe-cC-CCCeeEEEe--ccCCCCeEEEEe-CCCcEEEEEecC
Q 040307 220 KADPRFMATVGMDSNKVVVLDIRFPT----NPVVVLS-KH-EGSVNGISW--APLYGRRLCSVA-DDSRALIWEVVG 287 (339)
Q Consensus 220 p~~~~~l~~~~~d~~~i~i~d~~~~~----~~~~~~~-~~-~~~v~~~~~--~p~~~~~l~~~~-~dg~v~iwd~~~ 287 (339)
+ ....|+.+-++.. |..++.+... ..+..+. ++ ...+..|+. .+++..+|++++ .++++.+||...
T Consensus 189 d-~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 189 D-EYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp T-TTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred C-CCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 7 7778888888876 7777755321 1232221 11 236788888 455532454444 778999999973
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.31 E-value=0.029 Score=47.37 Aligned_cols=153 Identities=7% Similarity=0.041 Sum_probs=91.7
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcceeeEEeCCC--CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC---C----
Q 040307 176 GFNVFASVSGDCSVRVFDLRDKERSTIIYENPV--QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT---N---- 246 (339)
Q Consensus 176 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~---~---- 246 (339)
++..++.+- ++.||.-++..... ......+. .-..+..+..+| +|++||..+... |.|..+..+. .
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~-Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~~--V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSL-YHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDNE--IFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSS-CEEEECTTTCCCCTTCEEEECT-TSSEEEEECSSE--EEEEECCTTCSCCCCHHH
T ss_pred CCCEEEEEE-CCEEEEEECCCCCc-ceEEecCcccccCceeEEEECC-CCCEEEEecCCe--EEEEEecCccccCccccc
Confidence 444444443 46777777764432 22233321 123678899998 999999987664 8888886322 1
Q ss_pred --c--eEEEec------CCCCeeEEEeccCCC--CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeE
Q 040307 247 --P--VVVLSK------HEGSVNGISWAPLYG--RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEIN 314 (339)
Q Consensus 247 --~--~~~~~~------~~~~v~~~~~~p~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 314 (339)
+ .+.+.- ...+|..+.|+|-+. ..|++-..|+.|++||+......|...... ...+........|.
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~--~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKP--NNSFGLDARVNDIT 183 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCC--CSEEESCSSCCCEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcc--ccccCCCcccceEE
Confidence 0 112222 246799999999752 389999999999999999844222200000 00001111235689
Q ss_pred EEEecCCCCceEEEe--cCCeEE
Q 040307 315 VVRWSPLELDWIAIA--FVNKLQ 335 (339)
Q Consensus 315 ~~~~~p~~~~l~~~~--~d~~v~ 335 (339)
+++|.+++-.|.+.+ .+|-|+
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEE
Confidence 999999776666644 666664
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.30 E-value=0.049 Score=44.26 Aligned_cols=249 Identities=9% Similarity=0.133 Sum_probs=143.8
Q ss_pred CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCC
Q 040307 45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFS 123 (339)
Q Consensus 45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~ 123 (339)
+..|.|.|+.......+. ... --+.--+|.. +++|.-.+ .++|+|+++.+ .+....-.
T Consensus 48 ~~~VvIiDl~n~~~~~Rr----pi~----AdsAIMnP~~-----~ViALrag~~LQiFnletK~--klks~~~~------ 106 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRR----PIS----ADSAIMNPAS-----KVIALKAGKTLQIFNIEMKS--KMKAHTMT------ 106 (365)
T ss_dssp EEEEEEEETTSTTSCEEE----ECC----CSEEEECSSS-----SEEEEEETTEEEEEETTTTE--EEEEEECS------
T ss_pred CCEEEEEECCCCCCcccc----ccc----cceeeeCCCc-----cEEEEecCCeEEEechHHhh--hhcceecC------
Confidence 447888666544332221 112 2244468888 88887666 99999999986 44444433
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-CeeeeeeeccC----CceeEEEec-CCcEEEEEeC-------CCcEE
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDR-EILETQLVAHD----REVYDISWG-GFNVFASVSG-------DCSVR 190 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~----~~v~~~~~~-~~~~l~~~~~-------d~~i~ 190 (339)
.+|.--.|- +.+.|+-.+ +..|+-|++.. ..+.+.+..|. ..|..-..+ +.++++..+- .|.+.
T Consensus 107 e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 183 (365)
T 2xzh_A 107 DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 183 (365)
T ss_dssp SCEEEEEEC--SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred CccEEEEec--CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEE
Confidence 578888886 456666655 46899999964 34555665443 234444444 5666654442 36788
Q ss_pred EEECCCCcceeeEEeCCCCCCCeEEEEE--ecCCCCeEEEEeeC--CCeEEEEecCCC--CCc-e--EEEe------cCC
Q 040307 191 VFDLRDKERSTIIYENPVQDCPLLRLEW--NKADPRFMATVGMD--SNKVVVLDIRFP--TNP-V--VVLS------KHE 255 (339)
Q Consensus 191 i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~d--~~~i~i~d~~~~--~~~-~--~~~~------~~~ 255 (339)
+|..+... ....++ |......+.. ++....+++.+... +.+++|.++... +.+ . +... .-.
T Consensus 184 LYS~er~~--sQ~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~ 259 (365)
T 2xzh_A 184 LYSVDRKV--SQPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 259 (365)
T ss_dssp EEETTTTE--EEEECC--SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTT
T ss_pred EEeecccc--cceeee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccC
Confidence 88877654 222232 2222222222 11112244444332 224999998543 111 1 1111 112
Q ss_pred CCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCeE
Q 040307 256 GSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNKL 334 (339)
Q Consensus 256 ~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v 334 (339)
+---++..++.. .++..-+.-|.+.+||++++. ++ ...-....|..-+-+.....+++....|.|
T Consensus 260 DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt-------------~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 260 DFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT-------------CIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp CCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred CceEEEEecccC-CEEEEEeCCcEEEEEEcccCc-------------EEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 334577888877 488899999999999999988 33 222344556555555555567777777765
Q ss_pred E
Q 040307 335 Q 335 (339)
Q Consensus 335 ~ 335 (339)
.
T Consensus 326 l 326 (365)
T 2xzh_A 326 L 326 (365)
T ss_dssp E
T ss_pred E
Confidence 4
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.26 E-value=0.16 Score=49.36 Aligned_cols=172 Identities=9% Similarity=0.016 Sum_probs=100.7
Q ss_pred eEEEEECCCCeeeeeeec-cCCceeEEE---ec--CCcEEEEEe----------CCCcEEEEECCCCcceeeEEeCCCCC
Q 040307 147 TCVIWDIDREILETQLVA-HDREVYDIS---WG--GFNVFASVS----------GDCSVRVFDLRDKERSTIIYENPVQD 210 (339)
Q Consensus 147 ~v~i~d~~~~~~~~~~~~-~~~~v~~~~---~~--~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~ 210 (339)
.|++.|..+.+.+..+.- ....+.+++ |. +..+|+.|. ..|.|.+|++...+ ...+... ..+
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~-~v~ 885 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEK-EVK 885 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEE-EES
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEE-EcC
Confidence 466777766665544431 122344544 33 246888776 34789999997543 3333322 235
Q ss_pred CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceE-EEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVV-VLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+++++++-- +|.++++ .... +++|++... +.+. ....+ ..|..+.....+ .+++.|..-..|.++.++...
T Consensus 886 g~v~al~~~--~g~Lla~--ig~~-l~vy~l~~~-~~L~~~~~~~-~~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 886 GAVYSMVEF--NGKLLAS--INST-VRLYEWTTE-KELRTECNHY-NNIMALYLKTKG-DFILVGDLMRSVLLLAYKPME 957 (1158)
T ss_dssp SCEEEEEEE--TTEEEEE--ETTE-EEEEEECTT-SCEEEEEEEC-CCSCEEEEEEET-TEEEEEESSBCEEEEEEETTT
T ss_pred CcCEEEeee--CCEEEEE--cCCE-EEEEECCCC-ceEEEEeecc-ccEEEEEEeccC-CEEEEEEhhheEEEEEEEcCC
Confidence 788888754 5654443 3344 999999863 3333 22212 123333333455 489999988889888877644
Q ss_pred CCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 290 YRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
..+..+........++++.+-.++ .++.+..+|.+.+++
T Consensus 958 ---------~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~ 996 (1158)
T 3ei3_A 958 ---------GNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQ 996 (1158)
T ss_dssp ---------TEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEE
T ss_pred ---------CeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEe
Confidence 011122222346678888887665 577777888888765
No 323
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.19 E-value=0.048 Score=53.20 Aligned_cols=238 Identities=8% Similarity=0.103 Sum_probs=137.8
Q ss_pred EeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEe
Q 040307 24 AWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWE 102 (339)
Q Consensus 24 ~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~ 102 (339)
--+|. .+.+|.-. ...++|++++....... ...+.+|.-=.|-... .|+-.++ .|+-|+
T Consensus 72 IMnP~---~~iiALra-----g~~lQiFnl~~k~klks------~~~~e~VvfWkWis~~------~l~lVT~~aVyHW~ 131 (1630)
T 1xi4_A 72 IMNPA---SKVIALKA-----GKTLQIFNIEMKSKMKA------HTMTDDVTFWKWISLN------TVALVTDNAVYHWS 131 (1630)
T ss_pred ccCCC---cceEEEec-----CCeEEEeehHHhhhhcc------cccCCCceEEEecCCC------eeEEEcCCeEEEec
Confidence 35677 77888876 68999977665432222 2345578788887765 5555555 999999
Q ss_pred ecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEe-------CCCeEEEEECCCCeeeeeeeccCCceeEEEec
Q 040307 103 IHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCS-------VDTTCVIWDIDREILETQLVAHDREVYDISWG 175 (339)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 175 (339)
+... ..+...+..|..-.- ..|..-.-++ +.++++..| -.|.+.+|..+.+ ..+.+.+|...-..+...
T Consensus 132 ~~~~-s~P~k~fdR~~~L~~-~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~ 207 (1630)
T 1xi4_A 132 MEGE-SQPVKMFDRHSSLAG-CQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKME 207 (1630)
T ss_pred cCCC-CccHHHHhcchhccc-CeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccC
Confidence 9753 246566665532221 4566666776 777766543 3578889988654 344556776554444443
Q ss_pred ----CCcEEEEEeC---CCcEEEEECCCC-c-------ceeeE-EeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEE
Q 040307 176 ----GFNVFASVSG---DCSVRVFDLRDK-E-------RSTII-YENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVL 239 (339)
Q Consensus 176 ----~~~~l~~~~~---d~~i~i~d~~~~-~-------~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~ 239 (339)
+..+++.+.. .+.++|-++... . ....+ +.......-..++..++ .-..+..-+.-|. +++|
T Consensus 208 ~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~-~~~~ 285 (1630)
T 1xi4_A 208 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGY-IHLY 285 (1630)
T ss_pred CCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCce-EEEE
Confidence 2334443332 268999988654 1 11111 11111223345677776 5667777788888 9999
Q ss_pred ecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 240 DIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 240 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
|+.+ +.++..-+-....|...+-++... =++.....|.|.--.+....
T Consensus 286 d~~t-~~~i~~~ris~~~iF~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 286 DLET-GTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred eccc-chhhhhccccCCceEEeccCCCCC-ceEEEcCCceEEEEEEccch
Confidence 9998 555544443344444444333321 23333356666555555444
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.98 E-value=0.099 Score=42.48 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=78.0
Q ss_pred CeEEEeC-------CcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCC
Q 040307 89 DIVATSG-------DSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-----TTCVIWDIDRE 156 (339)
Q Consensus 89 ~~la~~~-------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~ 156 (339)
++++.|+ +.+.+||+.+.++..+..+.... .....+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR-----IGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC-----BSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc-----cceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence 6777776 16889999888755444333221 11122222 56788887764 46889998776
Q ss_pred eee--eeeeccCCceeEEEecCCcEEEEEeCC-----CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEE
Q 040307 157 ILE--TQLVAHDREVYDISWGGFNVFASVSGD-----CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATV 229 (339)
Q Consensus 157 ~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 229 (339)
+-. ..+.... .-.++...++.+++.|+.+ ..+.+||+.+.+-... ...+...... +++.. ++++++.|
T Consensus 195 ~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~i~v~G 269 (308)
T 1zgk_A 195 EWRMITAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-APMKHRRSAL-GITVH--QGRIYVLG 269 (308)
T ss_dssp EEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEEEE--TTEEEEEC
T ss_pred eEeeCCCCCCcc-ccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-CCCCCCccce-EEEEE--CCEEEEEc
Confidence 521 1111111 1122333367788888764 5689999988753222 1221111222 22332 56777777
Q ss_pred eeCCC----eEEEEecCC
Q 040307 230 GMDSN----KVVVLDIRF 243 (339)
Q Consensus 230 ~~d~~----~i~i~d~~~ 243 (339)
+.++. .+.+||+.+
T Consensus 270 G~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 270 GYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp CBCSSCBCCEEEEEETTT
T ss_pred CcCCCcccceEEEEcCCC
Confidence 75432 377788765
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.90 E-value=0.15 Score=42.53 Aligned_cols=235 Identities=13% Similarity=0.072 Sum_probs=117.4
Q ss_pred CceEEEEcCCCCCCCCC-eEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCCEEEEEeC---
Q 040307 73 TPTNIAFFPSEETLNPD-IVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTRRVATCSV--- 144 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~-~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~--- 144 (339)
....|+|.|++ + ++++-.. .|++++.+......+..+...... -......|+++|. ++.+.++-..
T Consensus 19 ~P~~i~~~pdG-----~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~-g~~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 19 HPWALAFLPDN-----HGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAH-GQGGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp SEEEEEECSTT-----CCEEEEETTTEEEEEETTTEECCCCBSCCCCCCS-TTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred CcEEEEEcCCC-----CEEEEEeCCceEEEEeCCCceeeEecCCcccccC-CCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 46899999999 8 8877665 888887432110111111100000 0145689999983 3444444322
Q ss_pred ----CCeEEEEECCCC--e--eee----eeec---cCCceeEEEec-CCcEEEEEeCC-------------CcEEEEECC
Q 040307 145 ----DTTCVIWDIDRE--I--LET----QLVA---HDREVYDISWG-GFNVFASVSGD-------------CSVRVFDLR 195 (339)
Q Consensus 145 ----d~~v~i~d~~~~--~--~~~----~~~~---~~~~v~~~~~~-~~~~l~~~~~d-------------~~i~i~d~~ 195 (339)
...|..+++... . ... .+.. .......|.|. ++.++++.+.. +.|.-+|..
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666432 1 111 1110 11123579999 66655554332 356666655
Q ss_pred CCc------------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee-CCC-eEEEEec--------CC----------
Q 040307 196 DKE------------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGM-DSN-KVVVLDI--------RF---------- 243 (339)
Q Consensus 196 ~~~------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~-~i~i~d~--------~~---------- 243 (339)
..- ........ + .....++|+|.++.++++-.. ++. .|.+... ..
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G--~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYG--I-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEEC--C-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCCCcCCCCCCccEEEEc--C-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 320 11111111 1 346789999855555544221 111 1222110 00
Q ss_pred ----------CCCceEEEecCCCCeeEEEecc-------CCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceee
Q 040307 244 ----------PTNPVVVLSKHEGSVNGISWAP-------LYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELC 306 (339)
Q Consensus 244 ----------~~~~~~~~~~~~~~v~~~~~~p-------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 306 (339)
...|+..+.. ......++|.+ ++ .++++.-..+.|...++.... .......
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~----------~~~~~~~ 317 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDK----------VTEDGRI 317 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTE----------EEEEEEE
T ss_pred CcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCe----------EeeeEEc
Confidence 0122233332 23567788864 35 466666677788888877533 0001111
Q ss_pred e-cccceeEEEEecCCCCceEEE
Q 040307 307 Y-QSMAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 307 ~-~~~~~i~~~~~~p~~~~l~~~ 328 (339)
. .....+..+++.|+|..+++.
T Consensus 318 ~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 318 LTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp SGGGCCCEEEEEECTTSCEEEEE
T ss_pred ccCCCCceeEEEECCCCcEEEEE
Confidence 1 234579999999999854443
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.90 E-value=0.13 Score=41.97 Aligned_cols=184 Identities=8% Similarity=0.048 Sum_probs=92.3
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-------------cE
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-------------SL 98 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-------------~i 98 (339)
+.+++.|+ ..+.+ ++....+... ... ..............++ .+++.|+. .+
T Consensus 16 ~~i~~~GG------~~~~~--yd~~~~~W~~-~~~-~~~~~r~~~~~~~~~~-----~lyv~GG~~~~~~~~~~~~~~~~ 80 (318)
T 2woz_A 16 DLILLVND------TAAVA--YDPMENECYL-TAL-AEQIPRNHSSIVTQQN-----QVYVVGGLYVDEENKDQPLQSYF 80 (318)
T ss_dssp EEEEEECS------SEEEE--EETTTTEEEE-EEE-CTTSCSSEEEEECSSS-----CEEEEESSCC-------CCCBEE
T ss_pred chhhhccc------cceEE--ECCCCCceec-ccC-CccCCccceEEEEECC-----EEEEECCcccCccccCCCccccE
Confidence 34566666 23566 4455555443 111 1111222223334455 67777761 16
Q ss_pred EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC-------CeEEEEECCCCeeeeeeeccCCc--e
Q 040307 99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD-------TTCVIWDIDREILETQLVAHDRE--V 169 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~--v 169 (339)
.+||..+.++..+..+.... ... +++.. ++.+++.|+.+ ..+.+||+.+.+-. .+.....+ -
T Consensus 81 ~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~ 151 (318)
T 2woz_A 81 FQLDNVSSEWVGLPPLPSAR-----CLF-GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS-EVKNLPIKVYG 151 (318)
T ss_dssp EEEETTTTEEEECSCBSSCB-----CSC-EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE-EECCCSSCEES
T ss_pred EEEeCCCCcEEECCCCCccc-----ccc-ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEe-ECCCCCCcccc
Confidence 77888777654443332211 111 22222 56788888764 35788898776522 11111111 1
Q ss_pred eEEEecCCcEEEEEeC------CCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCC----eEEEE
Q 040307 170 YDISWGGFNVFASVSG------DCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSN----KVVVL 239 (339)
Q Consensus 170 ~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~----~i~i~ 239 (339)
.++...++.+++.|+. -..+.+||+.+.+-... ...+...... +++.. ++++++.|+.++. .+.+|
T Consensus 152 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 152 HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL-APMKTPRSMF-GVAIH--KGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSC-EEEEE--TTEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC-CCCCCCcccc-eEEEE--CCEEEEEcCcCCCCccceEEEE
Confidence 1222235777777764 24589999988752222 1121112222 23332 6678888876542 37788
Q ss_pred ecCC
Q 040307 240 DIRF 243 (339)
Q Consensus 240 d~~~ 243 (339)
|..+
T Consensus 228 d~~~ 231 (318)
T 2woz_A 228 DLKT 231 (318)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 8875
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.72 E-value=0.23 Score=42.19 Aligned_cols=250 Identities=9% Similarity=0.139 Sum_probs=145.9
Q ss_pred cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccC
Q 040307 44 YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEF 122 (339)
Q Consensus 44 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~ 122 (339)
....|.|.|+.......+. .. .--+.-.+|.. +++|.-.+ ++.|+|+++.+ .+..+.-.
T Consensus 46 ~~~~vvIiDl~~~~~~~rr----pi----~AdsAIMnP~~-----~iiALrag~~lQiFnle~K~--klks~~~~----- 105 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRR----PI----SADSAIMNPAS-----KVIALKAGKTLQIFNIEMKS--KMKAHTMT----- 105 (494)
T ss_dssp TCCEEEEEETTSTTSCEEE----EC----CCSEEEECSSS-----SCEEEEETTEEEEEETTTTE--EEEEEECS-----
T ss_pred CCCeEEEEECCCCCcceec----cc----ccceeeeCCCC-----cEEEEecCCeEEEEchHHhh--hhcceecC-----
Confidence 3457888665543332221 11 12345578888 78887655 99999999886 44444433
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-eeeeeeeccC----CceeEEEec-CCcEEEEEeC-------CCcE
Q 040307 123 SSAITSFDWAGFDTRRVATCSVDTTCVIWDIDRE-ILETQLVAHD----REVYDISWG-GFNVFASVSG-------DCSV 189 (339)
Q Consensus 123 ~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~----~~v~~~~~~-~~~~l~~~~~-------d~~i 189 (339)
.+|.--.|- +.+.|+-.+ +..|+-|++... .+.+.+..|. ..|..-..+ +.++++..+- .|.+
T Consensus 106 -e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 106 -DDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp -SCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred -CCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence 467777886 456666654 578999999643 4556665443 234444444 5666664432 3678
Q ss_pred EEEECCCCcceeeEEeCCCCCCCeEEEEEe--cCCCCeEEEEeeC--CCeEEEEecCCC--CC-ce--EEEe------cC
Q 040307 190 RVFDLRDKERSTIIYENPVQDCPLLRLEWN--KADPRFMATVGMD--SNKVVVLDIRFP--TN-PV--VVLS------KH 254 (339)
Q Consensus 190 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~d--~~~i~i~d~~~~--~~-~~--~~~~------~~ 254 (339)
.+|....... ...++ |......+... +....++..+... |.+++|.++... +. +. .... .-
T Consensus 182 QLYS~er~~s--Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~ 257 (494)
T 1bpo_A 182 QLYSVDRKVS--QPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 257 (494)
T ss_dssp EEEESTTCCE--EEECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred EEeecccccc--chhee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence 8888876642 22232 32222222221 1111234444332 234999998653 11 11 1111 11
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEecCCe
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIAFVNK 333 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~d~~ 333 (339)
.+---++..++..+ ++..-+.-|.+.+||++++. ++ ...-....|..-+-+.....+++....|.
T Consensus 258 ~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt-------------~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~Gq 323 (494)
T 1bpo_A 258 NDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGT-------------CIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 323 (494)
T ss_dssp TCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEEETTTTEEEEEETTCE
T ss_pred cCceeEEEecccCC-EEEEEecCceEEEEecccce-------------eeeeecccCCceEEecccCCCCcEEEEccCce
Confidence 23445788888874 88899999999999999988 33 33334555666665565556777777776
Q ss_pred EE
Q 040307 334 LQ 335 (339)
Q Consensus 334 v~ 335 (339)
|.
T Consensus 324 Vl 325 (494)
T 1bpo_A 324 VL 325 (494)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.72 E-value=0.2 Score=41.65 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=116.7
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe--ecCCCCceEEEEcCC----CCCCCCCeE
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI--FDHPYTPTNIAFFPS----EETLNPDIV 91 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~----~~~~~~~~l 91 (339)
.....++|.|+ ++++++ . .++.|+++ +.++ . .....+. .........|+|+|+ + .++
T Consensus 29 ~~P~~ia~~pd---G~l~V~-e----~~g~I~~~--d~~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g-----~ly 91 (354)
T 3a9g_A 29 EVPWSIAPLGG---GRYLVT-E----RPGRLVLI--SPSG-K-KLVASFDVANVGEAGLLGLALHPEFPKKS-----WVY 91 (354)
T ss_dssp SCEEEEEEEET---TEEEEE-E----TTTEEEEE--CSSC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSC-----EEE
T ss_pred CCCeEEEEcCC---CeEEEE-e----CCCEEEEE--eCCC-c-eEeeccceeecCCCceeeEEeCCCCCcCC-----EEE
Confidence 46789999999 885555 4 36999885 4332 2 2110110 122356899999997 4 555
Q ss_pred EEeC---------CcEEEEeecCC--cc---ee-EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC------------
Q 040307 92 ATSG---------DSLRLWEIHDD--RT---EL-KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV------------ 144 (339)
Q Consensus 92 a~~~---------~~i~iw~~~~~--~~---~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------ 144 (339)
++-. ..|..|+.... .. +. +..+... .. .....|.|.| ++.++++.+.
T Consensus 92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~--~~--h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~ 166 (354)
T 3a9g_A 92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGA--YI--HNGGRIRFGP-DGMLYITTGDAADPRLAQDLSS 166 (354)
T ss_dssp EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECC--SS--CCCCCEEECT-TSCEEEECCCTTCGGGGTCTTC
T ss_pred EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCC--CC--cCCceEEECC-CCcEEEEECCCCCCccccCCCC
Confidence 5432 35666666544 11 11 1112211 11 2345799998 8887776443
Q ss_pred -CCeEEEEECCCC---------eeeeeeeccCCceeEEEecC--CcEEEEEeCCC---cEEEEECCC--------Cc---
Q 040307 145 -DTTCVIWDIDRE---------ILETQLVAHDREVYDISWGG--FNVFASVSGDC---SVRVFDLRD--------KE--- 198 (339)
Q Consensus 145 -d~~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~---~i~i~d~~~--------~~--- 198 (339)
.|.|.-++.... ..+.. .++. ....++|++ ++++++-.... .|.+..... ..
T Consensus 167 ~~G~I~ri~~dG~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 167 LAGKILRVDEEGRPPADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR 244 (354)
T ss_dssp CSSEEEEECTTSCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCeEEEEEcCCCCCCCCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence 245666665321 01111 2343 346788884 44444332221 133322111 00
Q ss_pred --ceeeEEeCCCCCCCeEEEEEec------CCCCeEEEEeeCCCeEEEEecCCCCCce--EEEe-cCCCCeeEEEeccCC
Q 040307 199 --RSTIIYENPVQDCPLLRLEWNK------ADPRFMATVGMDSNKVVVLDIRFPTNPV--VVLS-KHEGSVNGISWAPLY 267 (339)
Q Consensus 199 --~~~~~~~~~~~~~~v~~~~~~p------~~~~~l~~~~~d~~~i~i~d~~~~~~~~--~~~~-~~~~~v~~~~~~p~~ 267 (339)
.................++|.. .++.++++.-..+. |...++...+... ..+. .....+..+++.|+|
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG 323 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG 323 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence 0001111101224577888841 25555554433444 8888876533322 2222 223578899999999
Q ss_pred CCeEEEEe
Q 040307 268 GRRLCSVA 275 (339)
Q Consensus 268 ~~~l~~~~ 275 (339)
. ++++..
T Consensus 324 ~-lyv~~~ 330 (354)
T 3a9g_A 324 G-ILISTS 330 (354)
T ss_dssp C-EEEEEC
T ss_pred c-EEEEEe
Confidence 4 555553
No 329
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.69 E-value=0.17 Score=46.43 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=102.9
Q ss_pred CeEEEeC---C---cEEEEeecCCcceeEE-EeecCCCccCCCCEEEEEEcCCCCCEEEEEeCC------CeEEEEECCC
Q 040307 89 DIVATSG---D---SLRLWEIHDDRTELKS-LLNSNKTSEFSSAITSFDWAGFDTRRVATCSVD------TTCVIWDIDR 155 (339)
Q Consensus 89 ~~la~~~---~---~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~ 155 (339)
.+++.|| . .+.+||..+.++..+. .+...........-..+.+.. ++.+++.|+.+ ..+.+||+.+
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 6777776 1 7899999988765554 211000000001222333321 56788887754 3578899887
Q ss_pred Cee--eeeeeccCCceeEEEe-cCCcEEEEEeCCC--cEEEEECCCCcceeeEEe--CCCCCCCeEEEEEecCCCCeEEE
Q 040307 156 EIL--ETQLVAHDREVYDISW-GGFNVFASVSGDC--SVRVFDLRDKERSTIIYE--NPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 156 ~~~--~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
.+- +..+...... .+++. .++.+++.|+.++ .+.+||+.+..-...... .+........+.+....+.+++.
T Consensus 478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 641 2122111111 23333 3688888887654 689999988753222110 11111222335555433677888
Q ss_pred EeeC--C----CeEEEEecCCCCC--c--eEEEec---CCCCeeEEEeccCCCCeEEEEeC--------CCcEEEEEecC
Q 040307 229 VGMD--S----NKVVVLDIRFPTN--P--VVVLSK---HEGSVNGISWAPLYGRRLCSVAD--------DSRALIWEVVG 287 (339)
Q Consensus 229 ~~~d--~----~~i~i~d~~~~~~--~--~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~--------dg~v~iwd~~~ 287 (339)
|+.+ + ..+.+||+....- . ...+.. ....-.++....++ ++++.|+. ...+.+||+.+
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCC
Confidence 8762 1 2388999886431 0 122211 11111223333335 57777773 24588888876
Q ss_pred CC
Q 040307 288 PG 289 (339)
Q Consensus 288 ~~ 289 (339)
..
T Consensus 636 ~~ 637 (695)
T 2zwa_A 636 ET 637 (695)
T ss_dssp TE
T ss_pred Ce
Confidence 54
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.64 E-value=0.21 Score=40.74 Aligned_cols=184 Identities=9% Similarity=0.026 Sum_probs=92.6
Q ss_pred CeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC----CC-------eEEEEECCCCe
Q 040307 89 DIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV----DT-------TCVIWDIDREI 157 (339)
Q Consensus 89 ~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~-------~v~i~d~~~~~ 157 (339)
.+++.|+..+..||..+.++.. ..+..... ..-.+++. .++.+++.|+. ++ .+.+||..+.+
T Consensus 17 ~i~~~GG~~~~~yd~~~~~W~~-~~~~~~~~----r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 17 LILLVNDTAAVAYDPMENECYL-TALAEQIP----RNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEEECSSEEEEEETTTTEEEE-EEECTTSC----SSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred hhhhccccceEEECCCCCceec-ccCCccCC----ccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence 4566666688999999887544 22221110 11223333 26788888873 12 27788987765
Q ss_pred eee--eeeccCCceeEEEecCCcEEEEEeCC-------CcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEE
Q 040307 158 LET--QLVAHDREVYDISWGGFNVFASVSGD-------CSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMAT 228 (339)
Q Consensus 158 ~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 228 (339)
-.. .+.... .-.++...++.+++.|+.+ ..+.+||+.+.+-... ...+..... .+++.. ++.+++.
T Consensus 90 W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~--~~~iyv~ 164 (318)
T 2woz_A 90 WVGLPPLPSAR-CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYG-HNVISH--NGMIYCL 164 (318)
T ss_dssp EEECSCBSSCB-CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEES-CEEEEE--TTEEEEE
T ss_pred EEECCCCCccc-cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccc-cEEEEE--CCEEEEE
Confidence 221 111111 1122333367788888764 3478889887652221 111111111 122222 6777777
Q ss_pred EeeC------CCeEEEEecCCCCCceEEEecCCC--CeeEEEeccCCCCeEEEEeCC-----CcEEEEEecCCC
Q 040307 229 VGMD------SNKVVVLDIRFPTNPVVVLSKHEG--SVNGISWAPLYGRRLCSVADD-----SRALIWEVVGPG 289 (339)
Q Consensus 229 ~~~d------~~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d-----g~v~iwd~~~~~ 289 (339)
|+.+ .. +.+||..+.. -..+..... .-.+++. -++ ++++.|+.+ ..+.+||+.+..
T Consensus 165 GG~~~~~~~~~~-~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 165 GGKTDDKKCTNR-VFIYNPKKGD--WKDLAPMKTPRSMFGVAI-HKG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CCEESSSCBCCC-EEEEETTTTE--EEEECCCSSCCBSCEEEE-ETT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred cCCCCCCCccce-EEEEcCCCCE--EEECCCCCCCcccceEEE-ECC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 7753 23 8899987521 222211111 1112222 244 577777643 246677776544
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.57 E-value=0.66 Score=45.67 Aligned_cols=193 Identities=8% Similarity=0.156 Sum_probs=109.6
Q ss_pred EEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 040307 76 NIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDID 154 (339)
Q Consensus 76 ~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 154 (339)
+.-.+|.. +++|.-.+ ++.|+|+++.+ .+..+.-. .+|.--.|- +.+.|+-.+ +..|+-|++.
T Consensus 70 sAIMnP~~-----~iiALrag~~lQiFnl~~k~--klks~~~~------e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~ 133 (1630)
T 1xi4_A 70 SAIMNPAS-----KVIALKAGKTLQIFNIEMKS--KMKAHTMT------DDVTFWKWI--SLNTVALVT-DNAVYHWSME 133 (1630)
T ss_pred hhccCCCc-----ceEEEecCCeEEEeehHHhh--hhcccccC------CCceEEEec--CCCeeEEEc-CCeEEEeccC
Confidence 34468887 88888766 99999999876 33333322 467777886 455555554 4689999996
Q ss_pred C-Ceeeeeeecc----CCceeEEEec-CCcEEEEEe-------CCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEe--
Q 040307 155 R-EILETQLVAH----DREVYDISWG-GFNVFASVS-------GDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWN-- 219 (339)
Q Consensus 155 ~-~~~~~~~~~~----~~~v~~~~~~-~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-- 219 (339)
. ..+.+.+..| ...|..-..+ +.++++..| -.|.+.+|......... .++ |......+...
T Consensus 134 ~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~--ieg--ha~~F~~~~~~~~ 209 (1630)
T 1xi4_A 134 GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP--IEG--HAASFAQFKMEGN 209 (1630)
T ss_pred CCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh--hhH--hHhhhheeccCCC
Confidence 4 2344445444 2344444444 566665443 34778888877654211 111 22222222221
Q ss_pred cCCCCeEEEEee--CCCeEEEEecCCC--CCceEE-----Ee----cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEec
Q 040307 220 KADPRFMATVGM--DSNKVVVLDIRFP--TNPVVV-----LS----KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVV 286 (339)
Q Consensus 220 p~~~~~l~~~~~--d~~~i~i~d~~~~--~~~~~~-----~~----~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~ 286 (339)
+....++..+.. .|.+++|.++... +.+... +. .-..--.++..++..+ ++..-+.-|.+.+||+.
T Consensus 210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLE 288 (1630)
T ss_pred CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecc
Confidence 111223222222 1234999988553 111110 00 0122334677777774 88888889999999999
Q ss_pred CCC
Q 040307 287 GPG 289 (339)
Q Consensus 287 ~~~ 289 (339)
++.
T Consensus 289 t~~ 291 (1630)
T 1xi4_A 289 TGT 291 (1630)
T ss_pred cch
Confidence 987
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.57 E-value=0.26 Score=40.90 Aligned_cols=142 Identities=8% Similarity=-0.031 Sum_probs=75.4
Q ss_pred CeEEEeC--C-cEEEEeecC--CcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-C---------CeEEEEEC
Q 040307 89 DIVATSG--D-SLRLWEIHD--DRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV-D---------TTCVIWDI 153 (339)
Q Consensus 89 ~~la~~~--~-~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d---------~~v~i~d~ 153 (339)
.+++.|+ . .+.+||+.. .++..+..+..... ... +++.. ++.+++.|+. + ..+.+||+
T Consensus 21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R----~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR----DQA-TSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC----BSC-EEEEE--TTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC----ccc-eEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence 6777776 2 889999874 44444433331110 111 22222 5677887776 2 46889999
Q ss_pred CCCeee--eeeeccCCceeEEEecCCcEEEEEeCC---------------------------------------CcEEEE
Q 040307 154 DREILE--TQLVAHDREVYDISWGGFNVFASVSGD---------------------------------------CSVRVF 192 (339)
Q Consensus 154 ~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d---------------------------------------~~i~i~ 192 (339)
.+.+-. ..+......-.++...++.+++.|+.+ ..+.+|
T Consensus 94 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 94 KTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 876521 111101111112222367888888765 478899
Q ss_pred ECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeC------CCeEEEEec
Q 040307 193 DLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMD------SNKVVVLDI 241 (339)
Q Consensus 193 d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------~~~i~i~d~ 241 (339)
|+.+.+-... ...+.....-.+++.. ++.+++.|+.+ .. +.+||+
T Consensus 174 d~~~~~W~~~-~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~-v~~~d~ 224 (357)
T 2uvk_A 174 DPSTQQWSYA-GESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDA-VFELDF 224 (357)
T ss_dssp ETTTTEEEEE-EECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCC-EEEEEC
T ss_pred eCCCCcEEEC-CCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCc-eEEEEe
Confidence 9988763322 2221111111233333 56777777643 23 777876
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.00 E-value=0.13 Score=39.23 Aligned_cols=147 Identities=5% Similarity=-0.086 Sum_probs=81.0
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCc--------eeEEEec-CCcEEEEEeCCCcEEEEEC
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDRE--------VYDISWG-GFNVFASVSGDCSVRVFDL 194 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~--------v~~~~~~-~~~~l~~~~~d~~i~i~d~ 194 (339)
..+..++|+| ++.+.+. .+|.++-.+..+.....-+. .... -.++.|. ++.+.++ .||.|+-++.
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3677999999 8887777 67887777765532111111 1111 3567777 5666666 5698887775
Q ss_pred CCCccee------eEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc------eEEEe--cCCCCeeE
Q 040307 195 RDKERST------IIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP------VVVLS--KHEGSVNG 260 (339)
Q Consensus 195 ~~~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~------~~~~~--~~~~~v~~ 260 (339)
.+..... .+... .=..+..+.+.| +|.+.++. ++. ++-. ..+... ..+.. ..-..-+.
T Consensus 115 P~~~~~~Wl~~a~~vg~~--gw~~~~~lff~p-~G~Lyav~--dg~-lyr~--~~P~~~~~~wl~~~~~~g~~g~~~yr~ 186 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSG--GWSGFKFLFFHP-NGYLYAVH--GQQ-FYKA--LPPVSNQDNWLARATKIGQGGWDTFKF 186 (236)
T ss_dssp CCSTTCCHHHHSEEEECS--SGGGEEEEEECT-TSCEEEEE--TTE-EEEE--CCCSSTTCCHHHHCEEEESSSGGGEEE
T ss_pred CcCCCCceeccccEeccC--CCCceEEEEECC-CceEEEEe--CCc-EEec--CCCCCCCcccccccceeccCCcceEEE
Confidence 4332111 11111 114678999998 88877766 665 4332 222111 11121 22224455
Q ss_pred EEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 261 ISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 261 ~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
+.|.|++ .+.+.. ++ ++|......
T Consensus 187 l~f~~~G-~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 187 LFFSSVG-TLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp EEECTTS-CEEEEE--TT--EEEEESCCC
T ss_pred EEECCCC-cEEEEe--CC--eEEecCCcc
Confidence 7799998 355444 66 566555443
No 334
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.79 E-value=0.98 Score=41.43 Aligned_cols=196 Identities=9% Similarity=0.084 Sum_probs=101.2
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCccccee-eE---eecCCCCceEEEEcC-CCCCCCCCeEEEeC-C-------cE
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADN-RL---IFDHPYTPTNIAFFP-SEETLNPDIVATSG-D-------SL 98 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~-~~---~~~~~~~v~~l~~~~-~~~~~~~~~la~~~-~-------~i 98 (339)
+.+++.|+.....-+.+.+|+. ....+.... .. .......-.++...+ ++ .+++.|| + .+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~--~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-----~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSI--HYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-----QLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEE--CSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-----EEEEECCBSSTTCBCCCC
T ss_pred CEEEEECCCCCCCcCcEEEEEC--CCCeEEEeccCCCCCCCCccccceEEEEEccCC-----EEEEEcCCCCCCCccccE
Confidence 6677777731112345666444 444444311 00 011122223444443 66 7888776 1 57
Q ss_pred EEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCC--eEEEEECCCCeeeee-----eeccCCceeE
Q 040307 99 RLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDT--TCVIWDIDREILETQ-----LVAHDREVYD 171 (339)
Q Consensus 99 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~-----~~~~~~~v~~ 171 (339)
.+||..+.++..+..+.... ..-..+.+. ++.+++.|+.++ .+.+||+.+.+-... +.........
T Consensus 471 ~~yd~~t~~W~~~~~~p~~R-----~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a 543 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHTR-----FRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAG 543 (695)
T ss_dssp EEEETTTTEEEECCCCSBCC-----BSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCE
T ss_pred EEEeCCCCcEEECCCCCCCc-----ccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeE
Confidence 88998887755554333221 122223222 678888888755 789999987652111 1111112233
Q ss_pred EEec-C-CcEEEEEeCC-------CcEEEEECCCCcc-----eeeEEeC-CCCCCCeEEEEEecCCCCeEEEEeeCC---
Q 040307 172 ISWG-G-FNVFASVSGD-------CSVRVFDLRDKER-----STIIYEN-PVQDCPLLRLEWNKADPRFMATVGMDS--- 233 (339)
Q Consensus 172 ~~~~-~-~~~l~~~~~d-------~~i~i~d~~~~~~-----~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~--- 233 (339)
+.+. . +.+++.|+.+ ..+.+||+.+..- -..+... +........+.+. ++.+++.|+.++
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGL 621 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCC
Confidence 4445 3 6677777652 3588999988762 1122111 1112222333332 377888887531
Q ss_pred ----CeEEEEecCC
Q 040307 234 ----NKVVVLDIRF 243 (339)
Q Consensus 234 ----~~i~i~d~~~ 243 (339)
..+.+||..+
T Consensus 622 ~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 622 FDRTNSIISLDPLS 635 (695)
T ss_dssp CCTTTSEEEEETTT
T ss_pred CCCCCeEEEEECCC
Confidence 1388898875
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.47 E-value=0.89 Score=37.56 Aligned_cols=231 Identities=10% Similarity=0.007 Sum_probs=117.5
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceee---EeecCCCCceEEEEcCC----CCCCCCCe
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNR---LIFDHPYTPTNIAFFPS----EETLNPDI 90 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~~~----~~~~~~~~ 90 (339)
.....|+|.|+ +.++++-. ..|.|++ ++..++....... ...........|+++|+ + .+
T Consensus 32 ~~P~~ia~~pd---G~llVter----~~G~I~~--v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-----~l 97 (347)
T 3das_A 32 NSPWGLAPLPG---GDLLVSSR----DEATITR--VDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH-----MV 97 (347)
T ss_dssp SSEEEEEECTT---SCEEEEET----TTCEEEE--ECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC-----EE
T ss_pred CCceEEEEcCC---CcEEEEEe----cCCEEEE--EECCCCcEeeecccCceeecCCCCceeeEeccccccCC-----EE
Confidence 57789999999 98666644 4788988 4443333221101 11233566899999995 4 55
Q ss_pred EEEe---CC-cEEEEeecCC-----c---cee-EEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeC-------------
Q 040307 91 VATS---GD-SLRLWEIHDD-----R---TEL-KSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSV------------- 144 (339)
Q Consensus 91 la~~---~~-~i~iw~~~~~-----~---~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------- 144 (339)
.++- .+ .|.-|.+... . .+. +..+.. ... ..-..|.|.| ++.+.++.+.
T Consensus 98 Yv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~--~~~--H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~ 172 (347)
T 3das_A 98 YAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK--GVI--HNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSL 172 (347)
T ss_dssp EEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC--CSS--CCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCS
T ss_pred EEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC--CCC--ccCccccCCC-CCCEEEEECCCCCCccccCCCCC
Confidence 5542 23 6666665542 1 111 112221 111 2345799998 8887777542
Q ss_pred CCeEEEEECCCC---------eeeeeeeccCCceeEEEec-CCcEEEEEe-CCCcEEEEECCCCcc--------------
Q 040307 145 DTTCVIWDIDRE---------ILETQLVAHDREVYDISWG-GFNVFASVS-GDCSVRVFDLRDKER-------------- 199 (339)
Q Consensus 145 d~~v~i~d~~~~---------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~-------------- 199 (339)
.|.|.-.+.... ..+.. .+|.+ ...++|+ ++.++++-. .++.=.|--+..+..
T Consensus 173 ~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~ 250 (347)
T 3das_A 173 GGKILRMTPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSG 250 (347)
T ss_dssp TTCEEEECTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTT
T ss_pred CCEEEEEeCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcc
Confidence 355555554322 01111 24443 4678888 455444332 222222222222211
Q ss_pred ---eeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC---CceEEEecCCCCeeEEEeccCCCCeEEE
Q 040307 200 ---STIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT---NPVVVLSKHEGSVNGISWAPLYGRRLCS 273 (339)
Q Consensus 200 ---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 273 (339)
+...+.. +......++|. ++.++...-..+. |....+...+ ++...+.+....+..|+..|+|. ++++
T Consensus 251 ~~~P~~~~~~--~~~ap~G~~~~--~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~ 324 (347)
T 3das_A 251 FHDPVAQWST--DEASPSGIAYA--EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLV 324 (347)
T ss_dssp CCCCSEEECT--TTCCEEEEEEE--TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEE
T ss_pred ccCCcEecCC--CCCCCcceEEE--cCceeeccccCCE-EEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEE
Confidence 0111110 11355677776 4555544433344 7666665422 12223333346899999999994 4444
Q ss_pred Ee
Q 040307 274 VA 275 (339)
Q Consensus 274 ~~ 275 (339)
.+
T Consensus 325 td 326 (347)
T 3das_A 325 TS 326 (347)
T ss_dssp EC
T ss_pred Ec
Confidence 33
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.36 E-value=0.88 Score=36.83 Aligned_cols=136 Identities=9% Similarity=0.021 Sum_probs=69.1
Q ss_pred CCCEEEEEe--CCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCC--------------CcEEEEECCCCc
Q 040307 135 DTRRVATCS--VDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGD--------------CSVRVFDLRDKE 198 (339)
Q Consensus 135 ~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~ 198 (339)
++..|.... .++.|...+.... ....+... .+..+.. ++++|.-+... ..|+..++...+
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~~--~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~ 99 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSND--TAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG 99 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSC-SCEEEEEE--EEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred eCCEEEEEeCCCCceEEEEcCCCC-CCEEccCC--ceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence 445555543 2566666665433 34444322 2233322 46666655432 357777777665
Q ss_pred ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEe--eCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC
Q 040307 199 RSTIIYENPVQDCPLLRLEWNKADPRFMATVG--MDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD 276 (339)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 276 (339)
... +... . ...|+| .++.|+... .++. -.||-+...+.....+..+.. .+|+|+++ .|+-.+.
T Consensus 100 ~~~-l~~~-----~--~~~~s~-~g~~Iy~~~~~~~~~-~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~-~iy~t~~ 164 (302)
T 3s25_A 100 STV-LDPD-----P--CIYASL-IGNYIYYLHYDTQTA-TSLYRIRIDGEEKKKIKNHYL----FTCNTSDR-YFYYNNP 164 (302)
T ss_dssp CEE-EECS-----C--EEEEEE-ETTEEEEEEESSSSC-EEEEEEETTSCCCEEEESSCC----CCSEEETT-EEEEECT
T ss_pred ceE-eecC-----C--ccEEEE-eCCEEEEEeecCCCC-ceEEEEECCCCCeEEEeCCCc----eEeeEECC-EEEEEeC
Confidence 322 2221 2 236777 677777665 2343 444444433444556655433 46788885 5554443
Q ss_pred -CCcEEEEEecCCC
Q 040307 277 -DSRALIWEVVGPG 289 (339)
Q Consensus 277 -dg~v~iwd~~~~~ 289 (339)
...|..-++....
T Consensus 165 g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 165 KNGQLYRYDTASQS 178 (302)
T ss_dssp TTCCEEEEETTTTE
T ss_pred CCceEEEEECCCCC
Confidence 4566666655443
No 337
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.36 E-value=1.1 Score=37.80 Aligned_cols=153 Identities=9% Similarity=-0.078 Sum_probs=75.6
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec-----c--------CCceeEEEecC--CcEEEEEeCCCc
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA-----H--------DREVYDISWGG--FNVFASVSGDCS 188 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~--------~~~v~~~~~~~--~~~l~~~~~d~~ 188 (339)
..+.+|.+.|.+...|..+..++.|...+ ..++....+.. + ...+.++.+++ ...|..+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 45789999874455555565555554432 22332222210 0 12478888883 36666666544
Q ss_pred EEEEECCCCcceeeEEe-CCC-CCCCeEEEEEecCCCCeEEEEee-----------CCCeEEEEecCCCCCceEEEec-C
Q 040307 189 VRVFDLRDKERSTIIYE-NPV-QDCPLLRLEWNKADPRFMATVGM-----------DSNKVVVLDIRFPTNPVVVLSK-H 254 (339)
Q Consensus 189 i~i~d~~~~~~~~~~~~-~~~-~~~~v~~~~~~p~~~~~l~~~~~-----------d~~~i~i~d~~~~~~~~~~~~~-~ 254 (339)
|...+-.... -..+.. .+. ....+..++++|.+...|.++.. ++. ..+|.....++....+.. -
T Consensus 255 l~~s~D~G~t-W~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~-~~~~~S~DgG~tW~~~~~gl 332 (394)
T 3b7f_A 255 IYRMDRREGV-WKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGK-PAVYVTRDAGESWQRQDRGL 332 (394)
T ss_dssp EEEEETTTTE-EECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSS-CCEEEESSTTSCCEEECBTS
T ss_pred EEEeCCCCCc-ceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCc-eeEEEECCCCCCceECCCCC
Confidence 4444322221 111111 110 00345678888755566666542 233 456665554444444321 0
Q ss_pred C--C----C-eeEEEeccCCCCeEEEEeCCCcE
Q 040307 255 E--G----S-VNGISWAPLYGRRLCSVADDSRA 280 (339)
Q Consensus 255 ~--~----~-v~~~~~~p~~~~~l~~~~~dg~v 280 (339)
. . . ...++++|..+..|+.++.++.|
T Consensus 333 p~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 333 PTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 1 0 1 13688888654456666655554
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.11 E-value=1.2 Score=36.85 Aligned_cols=239 Identities=14% Similarity=0.145 Sum_probs=123.3
Q ss_pred CCCceEEEEcCCCCCCCCCeEEEeC-C-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCC---CCCEEEEE--e
Q 040307 71 PYTPTNIAFFPSEETLNPDIVATSG-D-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGF---DTRRVATC--S 143 (339)
Q Consensus 71 ~~~v~~l~~~~~~~~~~~~~la~~~-~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~--~ 143 (339)
-.....|+|.|++ +++++-- . .|++++..+++...+..+..-...+ ......|+++|. ++.+.++- .
T Consensus 31 L~~P~~ia~~pdG-----~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g-~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 31 LNSPWGLAPLPGG-----DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSG-EGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp CSSEEEEEECTTS-----CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBT-TBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred CCCceEEEEcCCC-----cEEEEEecCCEEEEEECCCCcEeeecccCceeecC-CCCceeeEeccccccCCEEEEEEecC
Confidence 3457899999999 8888876 3 8888876555432332221100001 156789999982 24444432 2
Q ss_pred CCCeEEEEECCCC----------eee-eeee-ccCCceeEEEec-CCcEEEEEeC-------------CCcEEEEECCCC
Q 040307 144 VDTTCVIWDIDRE----------ILE-TQLV-AHDREVYDISWG-GFNVFASVSG-------------DCSVRVFDLRDK 197 (339)
Q Consensus 144 ~d~~v~i~d~~~~----------~~~-~~~~-~~~~~v~~~~~~-~~~~l~~~~~-------------d~~i~i~d~~~~ 197 (339)
.++.|.-|.+..+ +.+ ..+. ........|.|. ++.++++.+. .|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 3456666665441 111 1121 111234568998 6777776542 244444444322
Q ss_pred cc------eeeEEeCCCCCCCeEEEEEecCCCCeEEEEe-eCCC-eEEEEecCC---------------CCCceEEEecC
Q 040307 198 ER------STIIYENPVQDCPLLRLEWNKADPRFMATVG-MDSN-KVVVLDIRF---------------PTNPVVVLSKH 254 (339)
Q Consensus 198 ~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~-~i~i~d~~~---------------~~~~~~~~~~~ 254 (339)
-. ...++.. .+ .....++|+| ++.+.++-. .++. .|.+..--. ...|+..+..+
T Consensus 185 ip~~nPf~~~~i~a~-G~-RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 185 PAPGNPFPGSPVYSY-GH-RNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp BCTTCSSTTCCEEEB-CC-SBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred ccCCCCCCCCeEEee-CC-CCcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 00 0112221 12 2456899998 777665532 1221 233321100 01234444333
Q ss_pred CCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccce-eeecccceeEEEEecCCCCceEEEe
Q 040307 255 EGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPE-LCYQSMAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 255 ~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~ 329 (339)
......++|.. + .++...-..+.|....+.... . ..++. .+.+....+.+|+..|||..+++..
T Consensus 262 ~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~--~-------~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTA--A-------AADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTE--E-------SSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCcceEEEc-C-ceeeccccCCEEEEEEecCCc--e-------ecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 34566778773 4 355555555666666665543 0 00122 2223456899999999998666654
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.86 E-value=2.4 Score=39.22 Aligned_cols=233 Identities=7% Similarity=-0.002 Sum_probs=124.9
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCC
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGD 96 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~ 96 (339)
...|.+|.-..+ | +|-.|+ .+| +..| +.. .+.............|.++.-..++ .+.+...+
T Consensus 21 ~n~V~~I~qD~~---G-~lWigT----~~G-L~ry--DG~--~~~~~~~~~~~~~~~i~~i~~d~~g-----~lWigT~~ 82 (758)
T 3ott_A 21 ASVVSCFLQDSE---G-LIWIGS----NKG-LFSY--DGY--STQQHFTYGENNNTRIYCGVIIDNT-----YLYMGTDN 82 (758)
T ss_dssp CCCEEEEEECTT---S-CEEEEE----SSC-EEEE--CSS--CEEECSCTTSTTSSCEEEEEEETTT-----EEEEEETT
T ss_pred cceEEEEEECCC---C-CEEEEE----CCC-cccc--CCC--ceEEEEccCCCCCceEEEEEEcCCC-----cEEEEeCC
Confidence 356888876666 5 455666 355 4443 321 1111000001123468888777777 56555545
Q ss_pred cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-----ccCCceeE
Q 040307 97 SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV-----AHDREVYD 171 (339)
Q Consensus 97 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-----~~~~~v~~ 171 (339)
-+..||..+.+... .... ....|.++... ++ .|..++.+ .|..+|..+++.. .+. .....|.+
T Consensus 83 Gl~~yd~~~~~f~~--~~~~-----~~~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~ 150 (758)
T 3ott_A 83 GILVYNYRADRYEQ--PETD-----FPTDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYS 150 (758)
T ss_dssp EEEEEETTTTEECC--CSCC-----CCSCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEE
T ss_pred CeEEEeCCCCEEEC--cccC-----CCceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEE
Confidence 78889987764221 1011 11457776543 44 45555655 6888998765532 221 11345778
Q ss_pred EEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC--CCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCce
Q 040307 172 ISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP--VQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPV 248 (339)
Q Consensus 172 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 248 (339)
+... ++.+.+ ++.. -|..+|..+.+......... .....|.++...+ ++..|..|+. ++ +..+|... .+ +
T Consensus 151 i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~G-l~~~~~~~-~~-~ 223 (758)
T 3ott_A 151 IIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GY-LFQYFPST-GQ-I 223 (758)
T ss_dssp EEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EE-EEEEETTT-TE-E
T ss_pred EEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CC-CeEEcCCC-Ce-E
Confidence 7776 555544 4544 47788877654221111110 0123478888775 5565555664 45 99999765 22 2
Q ss_pred EEEe-cCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCC
Q 040307 249 VVLS-KHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 249 ~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~ 289 (339)
..+. .....|.++...+++. |..|+.+ -+.+++.....
T Consensus 224 ~~~~~l~~~~i~~i~~d~~g~--lWigT~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 224 KQTEAFHNNSIKSLALDGNGD--LLAGTDN-GLYVYHNDTTP 262 (758)
T ss_dssp EEEEEEEEEEEEEEEECTTCC--EEEEETT-EEEEECCTTSC
T ss_pred EeccCCCCCeEEEEEEcCCCC--EEEEeCC-ceeEEecCCCc
Confidence 2221 1234588888888873 4445544 57777765543
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.77 E-value=1.8 Score=37.32 Aligned_cols=106 Identities=9% Similarity=0.176 Sum_probs=57.0
Q ss_pred CceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEeCC------CCCCCeEEEEEecC---CCCeEEEEee-----
Q 040307 167 REVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYENP------VQDCPLLRLEWNKA---DPRFMATVGM----- 231 (339)
Q Consensus 167 ~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~v~~~~~~p~---~~~~l~~~~~----- 231 (339)
...+.|+|. +++++++-...+.|++++...+.... +...+ .....+..|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 356789998 67666554333468888765444222 21111 12456789999984 4444444332
Q ss_pred -------CCCeEEEEecCCCC------CceE-EEec-CCCCeeEEEeccCCCCeEEEEe
Q 040307 232 -------DSNKVVVLDIRFPT------NPVV-VLSK-HEGSVNGISWAPLYGRRLCSVA 275 (339)
Q Consensus 232 -------d~~~i~i~d~~~~~------~~~~-~~~~-~~~~v~~~~~~p~~~~~l~~~~ 275 (339)
... |.-|+..... +.+. .+.. .......|+|.|+| ++.++.+
T Consensus 106 ~~~~~~~~~~-v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTI-IRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp --CCSCEEEE-EEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CccccccccE-EEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 122 5556553311 1111 1211 12347899999999 4666544
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.71 E-value=1.9 Score=37.22 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=59.5
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee--eeeeec------cCCceeEEEecC----CcEEEEEeC------
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREIL--ETQLVA------HDREVYDISWGG----FNVFASVSG------ 185 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~------~~~~v~~~~~~~----~~~l~~~~~------ 185 (339)
.....|+|.| +++++++-...+.|++++..+++. +..+.. ....+..|+|+| +..|..+..
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999998 888777654445788888655542 222211 234567999994 444444332
Q ss_pred -------CCcEEEEECCCCc----ceeeEEe-CC-CCCCCeEEEEEecCCCCeEEEEee
Q 040307 186 -------DCSVRVFDLRDKE----RSTIIYE-NP-VQDCPLLRLEWNKADPRFMATVGM 231 (339)
Q Consensus 186 -------d~~i~i~d~~~~~----~~~~~~~-~~-~~~~~v~~~~~~p~~~~~l~~~~~ 231 (339)
...|.-|++.... ....+.. .+ ........++|.| +|.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 1345555553321 1122221 11 1123578999998 7776666543
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.07 E-value=1.5 Score=33.51 Aligned_cols=141 Identities=6% Similarity=-0.108 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcc----eeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCe
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRT----ELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTT 147 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 147 (339)
..+..++|+|++ .+.+..++.++-.+..+.+. .....+.... . ....++.|.| ++.+.++ .||.
T Consensus 41 ~~~~~laf~P~G-----~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G---w-~~F~a~~fD~-~G~LYav--~dG~ 108 (236)
T 1tl2_A 41 SNFKFLFLSPGG-----ELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGG---W-NQFQFLFFDP-NGYLYAV--SKDK 108 (236)
T ss_dssp TTCSEEEECTTS-----CEEEEETTEEEEESCCCSTTCCHHHHCEEEECSC---G-GGCSEEEECT-TSCEEEE--ETTE
T ss_pred ccceeEEECCCc-----cEEEEeCCeEEEECCCCCCcccccccccEecccc---c-ccceEEEECC-CCCEEEe--CCCE
Confidence 478899999999 88888444655555433220 0111111100 0 1236788987 8887777 5699
Q ss_pred EEEEECCCCeeeee------e-eccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCc------ceeeEEeCCCCCCCe
Q 040307 148 CVIWDIDREILETQ------L-VAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKE------RSTIIYENPVQDCPL 213 (339)
Q Consensus 148 v~i~d~~~~~~~~~------~-~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~v 213 (339)
|+-++..+.....- + ..-=..+..|.+. ++.+.+.. |+.++-....... ....+... .-...
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~--g~~~y 184 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG--GWDTF 184 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS--SGGGE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC--CcceE
Confidence 98887644321111 1 1011357888888 56555555 7775432222111 11111111 12234
Q ss_pred EEEEEecCCCCeEEEE
Q 040307 214 LRLEWNKADPRFMATV 229 (339)
Q Consensus 214 ~~~~~~p~~~~~l~~~ 229 (339)
.-+.|.| ++.+.++.
T Consensus 185 r~l~f~~-~G~l~~v~ 199 (236)
T 1tl2_A 185 KFLFFSS-VGTLFGVQ 199 (236)
T ss_dssp EEEEECT-TSCEEEEE
T ss_pred EEEEECC-CCcEEEEe
Confidence 4566776 77776665
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.91 E-value=4 Score=37.80 Aligned_cols=226 Identities=7% Similarity=-0.016 Sum_probs=118.5
Q ss_pred CceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 73 TPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
.|.++...+++ ..|-.|++ -+..++..+.+......+.. ..|.++...+ ++.+.+ |+. +-+.++
T Consensus 192 ~i~~i~~d~~~-----~~lWigt~~Gl~~~~~~~~~~~~~~~l~~-------~~i~~i~~d~-~g~lWi-gT~-~Gl~~~ 256 (758)
T 3ott_A 192 FVNSLLEDTTR-----QCVWIGTEGYLFQYFPSTGQIKQTEAFHN-------NSIKSLALDG-NGDLLA-GTD-NGLYVY 256 (758)
T ss_dssp CEEEEEEETTT-----TEEEEEEEEEEEEEETTTTEEEEEEEEEE-------EEEEEEEECT-TCCEEE-EET-TEEEEE
T ss_pred eeEEEEEECCC-----CEEEEEECCCCeEEcCCCCeEEeccCCCC-------CeEEEEEEcC-CCCEEE-EeC-CceeEE
Confidence 47788777765 43323333 67788877665333333322 4688888764 555444 454 468888
Q ss_pred ECCCCeeeeeee--------ccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcceeeEEe----CCCCCCCeEEEEE
Q 040307 152 DIDREILETQLV--------AHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERSTIIYE----NPVQDCPLLRLEW 218 (339)
Q Consensus 152 d~~~~~~~~~~~--------~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~ 218 (339)
+..+++.. .+. -....|.++... +++ |-.|+..| +.++.... . ...... .......|.++.-
T Consensus 257 ~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~ 331 (758)
T 3ott_A 257 HNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFR 331 (758)
T ss_dssp CCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEE
T ss_pred ecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEE
Confidence 87665432 221 112457888776 444 44455556 55543321 1 111110 0112245777777
Q ss_pred ecCCCCeEEEEeeCCCeEEEEecCCCC-CceEEEec-------CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCC
Q 040307 219 NKADPRFMATVGMDSNKVVVLDIRFPT-NPVVVLSK-------HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGY 290 (339)
Q Consensus 219 ~p~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~ 290 (339)
.. ++.+. .|+. ++ +..++..... .....+.. ....|.++.-.+++. |..|+ ++-+..||..+..
T Consensus 332 D~-~g~lW-iGt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~~GL~~~~~~~~~- 403 (758)
T 3ott_A 332 DS-KGFYW-FGGA-NG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-DGSINRYDYATRQ- 403 (758)
T ss_dssp CT-TCCEE-EEET-TE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-TTEEEEEETTTTE-
T ss_pred cC-CCCEE-EeeC-Cc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-CCcHhhcCcCCCc-
Confidence 64 55544 4454 45 8888765321 11222211 123588888887773 44455 4568888876644
Q ss_pred CCCCCCCCCcccceeeec-----ccceeEEEEecCCCCceEEEecCCeEEEE
Q 040307 291 RSGNGGPSGDVEPELCYQ-----SMAEINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
........ ....|.++.-.+++. |..++..+.|.++
T Consensus 404 ----------~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~ 444 (758)
T 3ott_A 404 ----------FIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVV 444 (758)
T ss_dssp ----------EEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEE
T ss_pred ----------EEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEE
Confidence 11111101 124578888777775 4445555555554
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.19 E-value=3 Score=34.32 Aligned_cols=108 Identities=7% Similarity=-0.018 Sum_probs=59.9
Q ss_pred CeEEEeCC-cEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEc--CCCCCEEEEE-eCCCeEEEEECCCCeeeeeeec
Q 040307 89 DIVATSGD-SLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWA--GFDTRRVATC-SVDTTCVIWDIDREILETQLVA 164 (339)
Q Consensus 89 ~~la~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~ 164 (339)
.+++...| .|.-.|.++++ ..-.++... . .++....-. +.++..++.. +.||.|..++..+|.....+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~--~~W~~~~~~---~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~ 85 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGH--IIWSIEPEN---F-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSI 85 (339)
T ss_dssp EEEEEETTSCEEEEETTTTE--EEEEECGGG---S-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEH
T ss_pred EEEEEeCCCeEEEEECCCCc--EEEEecCCc---c-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecc
Confidence 34444445 88888888776 444444320 0 122111100 1122334333 6899999999988864443321
Q ss_pred ----cCCceeE---EEe------cCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307 165 ----HDREVYD---ISW------GGFNVFASVSGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 165 ----~~~~v~~---~~~------~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 202 (339)
...++.. ... +.+..+++++.++.+...|+++++..-.
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 1122221 001 1466888999999999999999985443
No 345
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.91 E-value=3.5 Score=34.14 Aligned_cols=243 Identities=7% Similarity=-0.014 Sum_probs=119.3
Q ss_pred CCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCccc--c-eeeEeecCCCCceEEEEcCC----CCCCCCCe
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFS--A-DNRLIFDHPYTPTNIAFFPS----EETLNPDI 90 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~--~-~~~~~~~~~~~v~~l~~~~~----~~~~~~~~ 90 (339)
.....|+|.|+ ++.|.++. ..|.|++++ .++.... . ..............++|+|+ + .+
T Consensus 18 ~~P~~i~~~pd---G~~l~V~e----~~G~i~~~~--~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-----~l 83 (353)
T 2g8s_A 18 DHPWALAFLPD---NHGMLITL----RGGELRHWQ--AGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR-----RI 83 (353)
T ss_dssp SSEEEEEECST---TCCEEEEE----TTTEEEEEE--TTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC-----EE
T ss_pred CCcEEEEEcCC---CCEEEEEe----CCceEEEEe--CCCceeeEecCCcccccCCCCCceeEEECCCCCCCC-----EE
Confidence 46789999999 98344445 478998855 3221111 0 00011122446789999995 4 55
Q ss_pred EEEeC--------C-cEEEEeecCCc--ceeEE-EeecCC---CccCCCCEEEEEEcCCCCCEEEEEeC-----------
Q 040307 91 VATSG--------D-SLRLWEIHDDR--TELKS-LLNSNK---TSEFSSAITSFDWAGFDTRRVATCSV----------- 144 (339)
Q Consensus 91 la~~~--------~-~i~iw~~~~~~--~~~~~-~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~----------- 144 (339)
+++-. . .|..++++... ..... .+.... ... ..-..|.|.| ++.++++.+.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~--h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~ 160 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGN--HFGGRLVFDG-KGYLFIALGENNQRPTAQDLD 160 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSS--CCCCCEEECS-SSEEEEEECCTTCGGGGGCTT
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCc--ccCccEEECC-CCcEEEEECCCCCCCccCCCC
Confidence 55532 1 56666665431 11111 121111 011 1235799998 8876666543
Q ss_pred --CCeEEEEECCCCe------------eeeee-eccCCceeEEEecC-CcEEEEEeCC--CcEEEEECCCCcc-------
Q 040307 145 --DTTCVIWDIDREI------------LETQL-VAHDREVYDISWGG-FNVFASVSGD--CSVRVFDLRDKER------- 199 (339)
Q Consensus 145 --d~~v~i~d~~~~~------------~~~~~-~~~~~~v~~~~~~~-~~~l~~~~~d--~~i~i~d~~~~~~------- 199 (339)
.|.|.-++....- ....+ .++. ....++|++ ...|.++... +.=.|.-+..+..
T Consensus 161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (353)
T 2g8s_A 161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLAT 239 (353)
T ss_dssp SCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBC
T ss_pred CCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCcc
Confidence 2467777764320 11112 2333 357888884 4444444322 1112222211110
Q ss_pred -----------------------eeeEEeCCCCCCCeEEEEEecC------CCCeEEEEeeCCCeEEEEecCCCCCceEE
Q 040307 200 -----------------------STIIYENPVQDCPLLRLEWNKA------DPRFMATVGMDSNKVVVLDIRFPTNPVVV 250 (339)
Q Consensus 200 -----------------------~~~~~~~~~~~~~v~~~~~~p~------~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 250 (339)
+...+. +...+..++|... .+.++++.-..+. |...++.. ......
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~-~~~~~~ 314 (353)
T 2g8s_A 240 WGINYSGFKIPEAKGEIVAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNG-DKVTED 314 (353)
T ss_dssp SSBCTTSSCCTTCCBSSCTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEET-TEEEEE
T ss_pred CCCCCCCCccCcccCCCCCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCC-CeEeee
Confidence 000011 1235667787631 3555554444444 87777764 332222
Q ss_pred --E-ecCCCCeeEEEeccCCCCeEEEEe-CCCcEEEEEec
Q 040307 251 --L-SKHEGSVNGISWAPLYGRRLCSVA-DDSRALIWEVV 286 (339)
Q Consensus 251 --~-~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~iwd~~ 286 (339)
+ ......+..+++.|+|. ++++.. .+| +||.+.
T Consensus 315 ~~~~~~~~~rp~~v~~~pdG~-lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 315 GRILTDRGQRIRDVRTGPDGY-LYVLTDESSG--ELLKVS 351 (353)
T ss_dssp EEESGGGCCCEEEEEECTTSC-EEEEECSTTE--EEEEEE
T ss_pred EEcccCCCCceeEEEECCCCc-EEEEEeCCCC--EEEEEe
Confidence 2 12234789999999995 444333 334 455543
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.88 E-value=3.3 Score=36.52 Aligned_cols=75 Identities=11% Similarity=0.008 Sum_probs=52.8
Q ss_pred CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC-----Cc-------eEEEecCCCCeeEEEeccCCCCeEEEEeCCC
Q 040307 211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT-----NP-------VVVLSKHEGSVNGISWAPLYGRRLCSVADDS 278 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~-----~~-------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 278 (339)
.....+..+| +|+++++++.-...+.++|+++.. +. ..+.. -.-.....+|.++| ....+.--|.
T Consensus 323 ksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidS 399 (638)
T 3sbq_A 323 KNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDS 399 (638)
T ss_dssp SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTT
T ss_pred CCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecc
Confidence 3556788998 888887776655459999997411 11 11222 23456789999998 5667777999
Q ss_pred cEEEEEecCC
Q 040307 279 RALIWEVVGP 288 (339)
Q Consensus 279 ~v~iwd~~~~ 288 (339)
.|.-|++...
T Consensus 400 qvvkWni~~a 409 (638)
T 3sbq_A 400 QVVKWNMEEA 409 (638)
T ss_dssp EEEEEEHHHH
T ss_pred eEEEEeccHH
Confidence 9999999864
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.09 E-value=4.6 Score=34.90 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=59.7
Q ss_pred CCeEEEEEecCCCC-eEEEEeeCCCeEEEEecCCC--CCceEEEe---------cCCCCeeEEEeccC----CCCeEEEE
Q 040307 211 CPLLRLEWNKADPR-FMATVGMDSNKVVVLDIRFP--TNPVVVLS---------KHEGSVNGISWAPL----YGRRLCSV 274 (339)
Q Consensus 211 ~~v~~~~~~p~~~~-~l~~~~~d~~~i~i~d~~~~--~~~~~~~~---------~~~~~v~~~~~~p~----~~~~l~~~ 274 (339)
.....|+|.| ++. .|+++...+. |++++.... ..++..+. ........|+|+|+ + .+.++-
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~-i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGY-VKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSY 90 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTE-EEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCce-EEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEE
Confidence 3568999998 664 4555577777 999975321 12233221 11356789999996 4 344443
Q ss_pred eC--CC--------cEEE--EEecCCCCCCCCCCCCCcccceeee---cccceeEEEEecCCCCceEEEecC
Q 040307 275 AD--DS--------RALI--WEVVGPGYRSGNGGPSGDVEPELCY---QSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 275 ~~--dg--------~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
+. ++ ..+| |.+........+ ....+.+... ........|+|.|||..+++.+..
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d---~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVD---LRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBC---GGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccC---CCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 32 11 1344 444432100000 0001111111 112346799999999766666653
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.07 E-value=2.4 Score=34.82 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=66.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeecc-CCceeEEEec----CCcEEEEE-eCCCcEEEEECCCCcceeeEEeCC-C
Q 040307 136 TRRVATCSVDTTCVIWDIDREILETQLVAH-DREVYDISWG----GFNVFASV-SGDCSVRVFDLRDKERSTIIYENP-V 208 (339)
Q Consensus 136 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~----~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-~ 208 (339)
+..++.++.||.|.-+|.++|+.+.++... ..++....-. ++..++.. +.||.|..+|..++...-...... .
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 457889999999999999999988888643 1222222111 12333333 589999999988764322111100 0
Q ss_pred CCCCeEEEEEec--------CCCCeEEEEeeCCCeEEEEecCCCCCceEEEe
Q 040307 209 QDCPLLRLEWNK--------ADPRFMATVGMDSNKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 209 ~~~~v~~~~~~p--------~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 252 (339)
...++.. .=.| ..+..+++|+.++. +...|+++ ++.+.++.
T Consensus 90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~t-G~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLN-GEIISAFG 138 (339)
T ss_dssp TTCSEEE-ECC----------CCEEEEECEEEEE-EEEEETTT-CCEEEEES
T ss_pred ecccccc-CCCceeecccccccCCEEEEEecCCE-EEEEECCC-CcEEEEEe
Confidence 1112221 0000 03557778888887 88888877 44455443
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.46 E-value=8.2 Score=30.71 Aligned_cols=219 Identities=13% Similarity=0.140 Sum_probs=114.0
Q ss_pred CCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 040307 72 YTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIW 151 (339)
Q Consensus 72 ~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~ 151 (339)
..|..++--... .+++ ..+.|+.|-.+... .+....... ..|..++-. ....++. . ||.|+.|
T Consensus 24 ~~i~~ia~G~~h-----~~~l-~~G~v~~wG~n~~G--qlg~p~~~~-----~~i~~ia~G--~~hs~~l-~-~G~v~~w 86 (282)
T 3qhy_B 24 SGVDAIAGGYFH-----GLAL-KGGKVLGWGANLNG--QLTMPAATQ-----SGVDAIAAG--NYHSLAL-K-DGEVIAW 86 (282)
T ss_dssp SSCCEEEECSSE-----EEEE-ETTEEEEEECCSSS--TTSCCGGGG-----SCCCEEEEC--SSEEEEE-E-TTEEEEE
T ss_pred CCCcEEEeCCCe-----EEEE-ECCEEEEEeCCCCC--CCCCCccCC-----CCEEEEEeC--CCEEEEE-E-CCEEEEe
Confidence 357777765544 3444 33388888765432 111000111 467777765 3344444 4 8999999
Q ss_pred ECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEEeCCCCCCCeEEEEEecCCCCeEEEEee
Q 040307 152 DIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGM 231 (339)
Q Consensus 152 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 231 (339)
-......+..-..-...|..++......++. . ||.|+.|-............ ....|..++-. ....++-.
T Consensus 87 G~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~~~~---~~~~i~~i~~G---~~~~~~l~- 157 (282)
T 3qhy_B 87 GGNEDGQTTVPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTVPAE---AQSGVTALDGG---VYTALAVK- 157 (282)
T ss_dssp ECCTTSTTCCCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSCCGG---GGSSEEEEEEC---SSEEEEEE-
T ss_pred eCCCCCCCCCCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCCCcc---CCCCeEEEEcc---cCEEEEEE-
Confidence 8654322211111234677776654333433 4 99999998765432221111 12457777653 23333334
Q ss_pred CCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccc
Q 040307 232 DSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMA 311 (339)
Q Consensus 232 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (339)
++. ++.|-.....+.- ....-...|..|+..... .++. .||.|..|=...... .. .|. ....
T Consensus 158 ~G~-v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gq-lg--------~p~---~~~~ 219 (282)
T 3qhy_B 158 NGG-VIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQ-TT--------VPT---EALS 219 (282)
T ss_dssp TTE-EEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTST-TC--------CCG---GGGS
T ss_pred CCE-EEEecCCCCCCCC-CceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCC-CC--------CCc---ccCC
Confidence 677 9999766533321 111113467778776654 3444 489999997655430 00 011 1123
Q ss_pred eeEEEEecCCCCceEEEecCCeEEEE
Q 040307 312 EINVVRWSPLELDWIAIAFVNKLQLL 337 (339)
Q Consensus 312 ~i~~~~~~p~~~~l~~~~~d~~v~~w 337 (339)
.|..|+-... +.++.. |+.|..|
T Consensus 220 ~v~~i~~G~~--h~~al~-~g~v~~w 242 (282)
T 3qhy_B 220 GVSAIASGEW--YSLALK-NGKVIAW 242 (282)
T ss_dssp SCCEEEECSS--CEEEEE-TTEEEEE
T ss_pred CceEEEcCCC--EEEEEE-CCEEEEe
Confidence 4666664443 344444 7777776
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.89 E-value=11 Score=30.38 Aligned_cols=138 Identities=10% Similarity=0.040 Sum_probs=70.9
Q ss_pred EEcCCCCCEEEEEe----CCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEe-CCCcEEEEECCCCcceeeEE
Q 040307 130 DWAGFDTRRVATCS----VDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVS-GDCSVRVFDLRDKERSTIIY 204 (339)
Q Consensus 130 ~~~~~~~~~l~~~~----~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~ 204 (339)
.|++ +++.|+-.. ....|..-++.. .....+..+.. ..+.| .++.|.-.+ ....|..-++...... .+.
T Consensus 110 ~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~--~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~ 183 (302)
T 3s25_A 110 YASL-IGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL--FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEA-LFY 183 (302)
T ss_dssp EEEE-ETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC--CCSEE-ETTEEEEECTTTCCEEEEETTTTEEE-EEE
T ss_pred EEEE-eCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc--eEeeE-ECCEEEEEeCCCceEEEEECCCCCEE-EEe
Confidence 5676 677777665 334555556653 33444443332 22333 345555444 3678888888776533 333
Q ss_pred eCCCCCCCeEEEEEecCCCCeEEEEeeCCC-eEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeC--CCcEE
Q 040307 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSN-KVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVAD--DSRAL 281 (339)
Q Consensus 205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~v~ 281 (339)
.. ... ..+.| ++.+|+-....+. .|..-++.. .....+.. ..+ ..|+|++. .|.-++. .+.|.
T Consensus 184 ~~-----~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG--~~~~~Lt~--~~~--~~~~~~g~-~Iy~~~~~~~~~i~ 249 (302)
T 3s25_A 184 DC-----NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINN--PNPVVLTE--ANI--EHYNVYGS-LIFYQRGGDNPALC 249 (302)
T ss_dssp CS-----CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSS--CCCEECSC--SCE--EEEEEETT-EEEEEECSSSCEEE
T ss_pred CC-----Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCC--CCeEEEeC--CCc--ceEEECCC-EEEEEECCCCcEEE
Confidence 22 222 34568 6667666554432 255555543 33444432 233 34888884 6665533 23444
Q ss_pred EEEecC
Q 040307 282 IWEVVG 287 (339)
Q Consensus 282 iwd~~~ 287 (339)
.-++..
T Consensus 250 ~~~~DG 255 (302)
T 3s25_A 250 VVKNDG 255 (302)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 444444
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.34 E-value=13 Score=30.95 Aligned_cols=239 Identities=8% Similarity=-0.078 Sum_probs=111.2
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcC--CCCCCCCCeEEEeCC---cEEEEeecCC
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFP--SEETLNPDIVATSGD---SLRLWEIHDD 106 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~~~~~la~~~~---~i~iw~~~~~ 106 (339)
...|.+|+ ..| +.+++-+.....+.... .......|.+|.+.| .+ .+++.+.. .-.||...++
T Consensus 22 ~g~l~vgt----~~G-l~~~~~~~~g~~W~~~~--~~~~~~~v~~i~~dp~~~~-----~l~~g~~~g~~g~gl~~s~D~ 89 (394)
T 3b7f_A 22 PVMLLVAT----IKG-AWFLASDPARRTWELRG--PVFLGHTIHHIVQDPREPE-----RMLMAARTGHLGPTVFRSDDG 89 (394)
T ss_dssp CCEEEEEE----TTE-EEEEEECTTSCSEEEEE--EESTTSEEEEEEECSSSTT-----CEEEEEEC--CCEEEEEESST
T ss_pred CCEEEEEe----cCc-eEEEECCCCCCCceECC--ccCCCCceEEEEECCCCCC-----eEEEEecCCCCCccEEEeCCC
Confidence 34677777 455 55533332223444311 112345699999998 44 56665532 2234444332
Q ss_pred -c-ceeEEEeec-CCCcc-----CCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCeeeeeeec-------------
Q 040307 107 -R-TELKSLLNS-NKTSE-----FSSAITSFDWAGFD-TRRVATCSVDTTCVIWDIDREILETQLVA------------- 164 (339)
Q Consensus 107 -~-~~~~~~~~~-~~~~~-----~~~~i~~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------- 164 (339)
+ +........ ..... ....|.++++.|.+ ...|.++...+.|...+- .++....+..
T Consensus 90 G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~ 168 (394)
T 3b7f_A 90 GGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGG 168 (394)
T ss_dssp TSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCC
T ss_pred CCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccc
Confidence 2 222211000 00000 01357889998744 566676666666655432 2332222211
Q ss_pred ------cCCceeEEEecC--CcEEEEEeCCCcEEEEECCCCcceeeEEeCCC----------CCCCeEEEEEecCCCCeE
Q 040307 165 ------HDREVYDISWGG--FNVFASVSGDCSVRVFDLRDKERSTIIYENPV----------QDCPLLRLEWNKADPRFM 226 (339)
Q Consensus 165 ------~~~~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~~l 226 (339)
....+.+|.+.+ .+.+..+..++.|...+-. ++.-........ ....+.++.++|.+...|
T Consensus 169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l 247 (394)
T 3b7f_A 169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDIL 247 (394)
T ss_dssp C----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEE
T ss_pred cccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEE
Confidence 123577888873 3444445444444433222 121111111000 013588999998656677
Q ss_pred EEEeeCCCeEEEEecCCCCCceEEEec--CC---CCeeEEEeccCCCCeEEEEeC-----------CCcEEEEEecCC
Q 040307 227 ATVGMDSNKVVVLDIRFPTNPVVVLSK--HE---GSVNGISWAPLYGRRLCSVAD-----------DSRALIWEVVGP 288 (339)
Q Consensus 227 ~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~p~~~~~l~~~~~-----------dg~v~iwd~~~~ 288 (339)
.++.. +. |...+- .+.....+.. .. ..+..++++|..+..|..+.. ++...||.....
T Consensus 248 ~vg~~-~g-l~~s~D--~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~Dg 321 (394)
T 3b7f_A 248 YQQNH-CG-IYRMDR--REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDA 321 (394)
T ss_dssp EEEET-TE-EEEEET--TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESST
T ss_pred EEEcC-Ce-EEEeCC--CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCC
Confidence 66654 33 554432 1222222211 11 235678888754344555432 334567766554
No 352
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=84.47 E-value=26 Score=32.63 Aligned_cols=150 Identities=10% Similarity=-0.061 Sum_probs=81.5
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-------CCceeEEEecC--CcEEEEEeCCCc----EE
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-------DREVYDISWGG--FNVFASVSGDCS----VR 190 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~--~~~l~~~~~d~~----i~ 190 (339)
..|.+|+++|.+...+.+++..+.|...+ ..++....+..+ ...+.+|++++ .+.+..+..+.. -.
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 68999999997677888888878776554 234433333221 24688999873 344444433211 34
Q ss_pred EEECCC-CcceeeEEeCCC------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec------CCCC
Q 040307 191 VFDLRD-KERSTIIYENPV------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK------HEGS 257 (339)
Q Consensus 191 i~d~~~-~~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~------~~~~ 257 (339)
||.... ++.-..+..... ....+..++++|.+.+.++++...+. ||-....++.-..+.. ....
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g---l~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG---IWKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC---EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC---EEEECCCCcccCCCccCccccCCCCC
Confidence 444333 222222211100 01135678888866677777664444 3433333433333321 1245
Q ss_pred eeEEEeccCCCCeEEEEeCC
Q 040307 258 VNGISWAPLYGRRLCSVADD 277 (339)
Q Consensus 258 v~~~~~~p~~~~~l~~~~~d 277 (339)
+..+.++|..+..++.+..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 78899998654466666554
No 353
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=80.99 E-value=34 Score=31.51 Aligned_cols=162 Identities=12% Similarity=-0.022 Sum_probs=84.2
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-------CCceeEEEecC--CcEEEEEeCC-------Cc
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAH-------DREVYDISWGG--FNVFASVSGD-------CS 188 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~--~~~l~~~~~d-------~~ 188 (339)
.|..|+++|.+...+.++...+.|...+- .++....+..+ ...|.+|++++ .+.++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 78899999966677777777777766552 34333333221 23588999982 3344433321 12
Q ss_pred EEEEECCCC-cceeeEEeCCC------CCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec--------
Q 040307 189 VRVFDLRDK-ERSTIIYENPV------QDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK-------- 253 (339)
Q Consensus 189 i~i~d~~~~-~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-------- 253 (339)
..||..... +.-..+..... ....+..++++|.+...++++...+. -||-....++.-..+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~--gl~~S~DgG~tW~~~~~~~~~~~~~ 180 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN--GLWRSTDYGVTWSKVESFPNPGTYI 180 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC--CEEEESSTTSSCEECTTCCCCCCCB
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC--cEEEeCCCCcceecccCCCCCcccc
Confidence 456655443 22222211100 01124679999977777877764421 23433332322222221
Q ss_pred ---------CCCCeeEEEeccCCC------CeEEEEeCCCcEEEEEecCCC
Q 040307 254 ---------HEGSVNGISWAPLYG------RRLCSVADDSRALIWEVVGPG 289 (339)
Q Consensus 254 ---------~~~~v~~~~~~p~~~------~~l~~~~~dg~v~iwd~~~~~ 289 (339)
....+..+.++|..+ ..+..+..++.-.||......
T Consensus 181 ~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG 231 (737)
T 2cn3_A 181 YDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGG 231 (737)
T ss_dssp SCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTT
T ss_pred cCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCC
Confidence 112477788888642 256666655543456555443
No 354
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=80.19 E-value=37 Score=31.33 Aligned_cols=112 Identities=15% Similarity=0.082 Sum_probs=59.3
Q ss_pred CeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe-ec----CCCCceEEEEcCCCCCCCCCeEEE
Q 040307 19 PISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI-FD----HPYTPTNIAFFPSEETLNPDIVAT 93 (339)
Q Consensus 19 ~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~----~~~~v~~l~~~~~~~~~~~~~la~ 93 (339)
.|..|+++|. +...+.++. ..+.| |..+..+..... ... .. ....|.+|++.|...+ .+++.
T Consensus 24 ~i~~i~~~p~--~~~~~~~~~----~~ggv--~rS~D~G~tW~~--i~~~~~~~~~~~~~i~~i~~dp~~~~---~v~v~ 90 (737)
T 2cn3_A 24 FMPGIVFNET--EKDLIYARA----AIGGA--YRWDPSTETWIP--LLDHFQMDEYSYYGVESIATDPVDPN---RVYIV 90 (737)
T ss_dssp CCCEEEECSS--STTCEEEEC----SSSCE--EEEETTTTEEEE--CCTTCCGGGGGGGCEEEEEECSSSTT---CEEEE
T ss_pred eeeEEEECCC--CCCEEEEEe----cCCcE--EEeCCCCCCEEE--CcCccCcccccCCCcceEEeCCCCCC---EEEEE
Confidence 8999999997 234555555 34554 445555555543 110 01 0235889999985421 45555
Q ss_pred eCC--------cEEEEeecCCc--ceeEEEeecCCCccC---CCCEEEEEEcCCCCCEEEEEeCC
Q 040307 94 SGD--------SLRLWEIHDDR--TELKSLLNSNKTSEF---SSAITSFDWAGFDTRRVATCSVD 145 (339)
Q Consensus 94 ~~~--------~i~iw~~~~~~--~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~d 145 (339)
.+. ...||.-.++. ++.... ....... ...+..|+++|.+.+.+..+...
T Consensus 91 ~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~--~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 91 AGMYTNDWLPNMGAILRSTDRGETWEKTIL--PFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp ECSCSSSSSCCCCEEEEESSSSSSCEEEEC--SSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ecccccccccCCccEEEeCCCCCCcccCCC--CcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 432 35677665542 222221 1100000 01246789998777777777643
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=78.19 E-value=8.6 Score=34.02 Aligned_cols=101 Identities=6% Similarity=-0.158 Sum_probs=60.4
Q ss_pred EEEEecCC----CCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccc-eeeeccc
Q 040307 236 VVVLDIRF----PTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEP-ELCYQSM 310 (339)
Q Consensus 236 i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~ 310 (339)
+.+.|.+. .......+.. ......+..+|||..++++|-.+.++.++|++.....-. ......... .....-.
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~-~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA-GKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHT-TCCSCGGGGEEECCBCC
T ss_pred eeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh-ccccCcccceEeeccCC
Confidence 78888875 2333344433 456678999999964555555788999999986320000 000000011 1122334
Q ss_pred ceeEEEEecCCCCceEE-EecCCeEEEEeC
Q 040307 311 AEINVVRWSPLELDWIA-IAFVNKLQLLKV 339 (339)
Q Consensus 311 ~~i~~~~~~p~~~~l~~-~~~d~~v~~w~v 339 (339)
......+|.++| ...+ ---|..|.-|++
T Consensus 378 lGPlHt~Fd~~G-~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 378 LGPLHTTFDGRG-NAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp SCEEEEEECSSS-EEEEEETTTTEEEEEEH
T ss_pred CcccEEEECCCC-ceEeeeeecceEEEEec
Confidence 567889999998 3444 447899988874
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.01 E-value=48 Score=30.44 Aligned_cols=201 Identities=6% Similarity=0.013 Sum_probs=99.1
Q ss_pred EEEEE-EcCCCCCEEEEE-e----CCCeEEEEECCCCeeee-eee-ccCC------ceeEEEecCCcEEEEEe-------
Q 040307 126 ITSFD-WAGFDTRRVATC-S----VDTTCVIWDIDREILET-QLV-AHDR------EVYDISWGGFNVFASVS------- 184 (339)
Q Consensus 126 i~~~~-~~~~~~~~l~~~-~----~d~~v~i~d~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~l~~~~------- 184 (339)
...+. ++| ++++++.+ + .-..++++|+.+++.+. .+. .-+. ....++|.+.+.+..+.
T Consensus 131 ~~g~~~~~~-~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQ-NPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSS-STTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCC-CCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 34455 777 77766654 2 23479999999987653 122 0000 01234777434443332
Q ss_pred ----CCCcEEEEECCCCc-ceeeEEeCCCCCCCeEEEEEecCCCC-----eEEEEeeCC--CeEEEEecCCCCCceEEEe
Q 040307 185 ----GDCSVRVFDLRDKE-RSTIIYENPVQDCPLLRLEWNKADPR-----FMATVGMDS--NKVVVLDIRFPTNPVVVLS 252 (339)
Q Consensus 185 ----~d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~-----~l~~~~~d~--~~i~i~d~~~~~~~~~~~~ 252 (339)
....|+.|.+.+.. .-..++..+.. ........++ ++. .+++.+.+. ..+.+.|...+...+..+.
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKE-YIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTT-SCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCC-ceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 23568889888764 33445555332 2233444554 444 234333222 2367777654333334443
Q ss_pred cCCCCeeEEEeccCCCCeEEEE----------eCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCC
Q 040307 253 KHEGSVNGISWAPLYGRRLCSV----------ADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLE 322 (339)
Q Consensus 253 ~~~~~v~~~~~~p~~~~~l~~~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 322 (339)
.... ..+..++++ .+++.. ...+.|...++......+.. ......+........+..+.|..+.
T Consensus 288 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (711)
T 4hvt_A 288 MPSD--ATLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESD---KTSLKILFTPTANEVFNFISTTKDR 361 (711)
T ss_dssp SCTT--CEEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGG---CTTCEEEECCCTTEEEEEEEECSSC
T ss_pred cCCc--ceEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccc---cccceEEECCCCCCeEEEEEEECCE
Confidence 3222 223445555 455532 14577888888764200000 0001112223345578889998763
Q ss_pred CceEEEecCCeEEE
Q 040307 323 LDWIAIAFVNKLQL 336 (339)
Q Consensus 323 ~~l~~~~~d~~v~~ 336 (339)
.+++...++.-++
T Consensus 362 -l~~~~~~~~~~~l 374 (711)
T 4hvt_A 362 -VFLATYDNVVAKV 374 (711)
T ss_dssp -EEEEEEETTEEEE
T ss_pred -EEEEEEECCEEEE
Confidence 3445556665333
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.67 E-value=52 Score=30.20 Aligned_cols=244 Identities=14% Similarity=0.062 Sum_probs=123.6
Q ss_pred eEEE-eeecCCcccEEEEeeeccc-cCCeEEEEecCCCCCcccceeeEeecCCC------CceEEEEcCCCCCCCCCeEE
Q 040307 21 STVA-WSVRHDRKSRLAVGSFLED-YSNKIELVNFNPETSDFSADNRLIFDHPY------TPTNIAFFPSEETLNPDIVA 92 (339)
Q Consensus 21 ~~i~-~sp~~~~~~~la~g~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------~v~~l~~~~~~~~~~~~~la 92 (339)
..+. ++|+ +++++++-..++ .-..++++| ..++++... .+...-.. ....++|..++ .++.
T Consensus 132 ~g~~~~~~~---~~~~~~~ls~~G~d~~~~~~~d--~~t~~~~~~-~~~~~~k~~~~~~~~~~~~~W~d~~-----~~~~ 200 (711)
T 4hvt_A 132 RGVSNCFQN---PNRYLISMSFGGKDEMFFREWD--LEKKDFVKN-GFEPITNSGKLLEGKFTYPTWINKD-----TIIF 200 (711)
T ss_dssp EEEEECSSS---TTEEEEEEEETTCSEEEEEEEE--TTTTEECTT-CSCCBCTTCCBCCEETCCEEEEETT-----EEEE
T ss_pred eceeecCCC---CCEEEEEeCCCCCceeEEEEEE--CCcCCcCCC-CcccccccccccccccceeeEECCC-----EEEE
Confidence 3444 8888 888888764222 234577744 445554431 11000000 12445887554 5555
Q ss_pred Ee---------CC---cEEEEeecCCcceeEEEeecCCCccCCCCE-EEEEEcCCCCC-----EEEEEeC---CCeEEEE
Q 040307 93 TS---------GD---SLRLWEIHDDRTELKSLLNSNKTSEFSSAI-TSFDWAGFDTR-----RVATCSV---DTTCVIW 151 (339)
Q Consensus 93 ~~---------~~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~-----~l~~~~~---d~~v~i~ 151 (339)
+. ++ .|+.|.+.+....-...+.+.. ..+ .....++ ++. .+++.+. ...+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~-----~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 274 (711)
T 4hvt_A 201 NLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPK-----EYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYIL 274 (711)
T ss_dssp CCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCT-----TSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEE
T ss_pred EeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCC-----CceEEEEEEec-CCCceEEEEEEEEecccCceeEEEE
Confidence 42 11 7889988776544445555533 222 2344444 544 2444332 2456666
Q ss_pred ECCC--CeeeeeeeccCCceeEEEecCCcEEEEE----------eCCCcEEEEECCCCc-------ceeeEEeCCCCCCC
Q 040307 152 DIDR--EILETQLVAHDREVYDISWGGFNVFASV----------SGDCSVRVFDLRDKE-------RSTIIYENPVQDCP 212 (339)
Q Consensus 152 d~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~~~----------~~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~ 212 (339)
+... ++ +..+..... ..-+....+.+++.. ...+.|...|+.... ....+.. +.....
T Consensus 275 ~~~~~~~~-~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 351 (711)
T 4hvt_A 275 DTKYKNLK-LQKINMPSD-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT-PTANEV 351 (711)
T ss_dssp ECSSSSCE-EEECCSCTT-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC-CCTTEE
T ss_pred cCCCCCCc-ceEeecCCc-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC-CCCCCe
Confidence 7653 33 223321121 111222244444422 246778899987642 1222222 234456
Q ss_pred eEEEEEecCCCCeEEEEeeCCC-eEEEEecCCCCCceEE-EecC-CCCeeEEEeccCCCCeEEEEeCC---CcEEEEEec
Q 040307 213 LLRLEWNKADPRFMATVGMDSN-KVVVLDIRFPTNPVVV-LSKH-EGSVNGISWAPLYGRRLCSVADD---SRALIWEVV 286 (339)
Q Consensus 213 v~~~~~~p~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~-~~~~-~~~v~~~~~~p~~~~~l~~~~~d---g~v~iwd~~ 286 (339)
+..+.|.. +.++++...++. .+.++|+......... +... .+.+..+..+++++.++++.+.. +.+..+|+.
T Consensus 352 l~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 352 FNFISTTK--DRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEECS--SCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEC--CEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77888874 466666666664 4777876542101222 2221 24577777778876566665532 567777665
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=73.96 E-value=38 Score=28.28 Aligned_cols=138 Identities=7% Similarity=0.043 Sum_probs=79.8
Q ss_pred eEEEEECCCC--eeeeeeec------cCCceeEEEec---C-----CcEE-EEEeCCCcEEEEECCCCcceeeEEeC--C
Q 040307 147 TCVIWDIDRE--ILETQLVA------HDREVYDISWG---G-----FNVF-ASVSGDCSVRVFDLRDKERSTIIYEN--P 207 (339)
Q Consensus 147 ~v~i~d~~~~--~~~~~~~~------~~~~v~~~~~~---~-----~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~--~ 207 (339)
+|.+||+.+. +.++.+.- ....+..+.+. + +.++ ++=+..+.|.++|+.+++........ +
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 77766632 12346677766 1 2333 33335678999999988644332100 0
Q ss_pred CC-------------CCCeEEEEEecCC---CCeEEEEeeCCCeEEEEecC-----CC--CCceEEEecCC--CCeeEEE
Q 040307 208 VQ-------------DCPLLRLEWNKAD---PRFMATVGMDSNKVVVLDIR-----FP--TNPVVVLSKHE--GSVNGIS 262 (339)
Q Consensus 208 ~~-------------~~~v~~~~~~p~~---~~~l~~~~~d~~~i~i~d~~-----~~--~~~~~~~~~~~--~~v~~~~ 262 (339)
.. ...+..++++|.. ++.|......+. ++|.+. .. ...+..+-... ..-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 00 1367888999831 677777776663 445432 11 12222222211 2333566
Q ss_pred ec-cCCCCeEEEEeCCCcEEEEEecC
Q 040307 263 WA-PLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 263 ~~-p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
.. .+| .++++--..+.|..|+...
T Consensus 282 ~D~~~G-~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTK-VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTC-EEEEEESSSSEEEEEETTS
T ss_pred EeCCCC-eEEEEeccCCeEEEEeCCC
Confidence 75 566 5677777888999999876
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=68.76 E-value=50 Score=27.50 Aligned_cols=200 Identities=12% Similarity=0.042 Sum_probs=99.6
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC--------e---eeeeeec-cCCceeEEEec-CCcEEEEEeCCCcEEE
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDRE--------I---LETQLVA-HDREVYDISWG-GFNVFASVSGDCSVRV 191 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--------~---~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~i 191 (339)
.+..++- .....+.-..||.|+.|-.... + ....+.. ....+..++.+ .....+.-..||.|+.
T Consensus 54 ~i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEE
T ss_pred ceEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEE
Confidence 3445543 3345555577889998864321 0 0111111 12234456666 4556666778999999
Q ss_pred EECCCCc-----------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-------e---EE
Q 040307 192 FDLRDKE-----------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-------V---VV 250 (339)
Q Consensus 192 ~d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-------~---~~ 250 (339)
|-..... .+..+... ....|..++- .....++-..++. |+.|-....++. . ..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l--~~~~i~~va~---G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~p~~ 204 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESL--RGIEVVDVAA---GGAHSACVTAAGD-LYTWGKGRYGRLGHSDSEDQLKPKL 204 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEE---CSSEEEEEETTSC-EEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred EeCCCCCcCCCCCCccCcCCeEeccc--CCCeEEEEEe---CcCeEEEEeCCCe-EEEeCCCCCCCcCCCCCcccccceE
Confidence 9654311 11111111 2235666664 3455556677887 999965432110 0 11
Q ss_pred Eec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeec-ccceeEEEEecCCCCceEEE
Q 040307 251 LSK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQ-SMAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 251 ~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l~~~ 328 (339)
+.. ....|..++..... ...+.-..||.|..|-..... +...........|..+.. ....|..|+.... +.++.
T Consensus 205 v~~~~~~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~G-qLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~al 280 (389)
T 3kci_A 205 VEALQGHRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYG-KLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVAL 280 (389)
T ss_dssp CGGGTTSCEEEEEECCSS-CEEEEEETTTEEEEEECCGGG-TTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEE
T ss_pred ecccCCCeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCC-CCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEE
Confidence 111 12356667665433 356666788999999655432 111111111111222221 1224666665433 45566
Q ss_pred ecCCeEEEE
Q 040307 329 AFVNKLQLL 337 (339)
Q Consensus 329 ~~d~~v~~w 337 (339)
..||.|..|
T Consensus 281 t~~G~v~~w 289 (389)
T 3kci_A 281 TKSGAVYTW 289 (389)
T ss_dssp ETTSCEEEE
T ss_pred eCCCeEEEE
Confidence 677777776
No 360
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=68.10 E-value=78 Score=29.47 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=77.6
Q ss_pred cCCeeEEEeeecCCcccEEEEeeeccccCCeEEEEecCCCCCcccceeeEe-ec----CCCCceEEEEcCCCCCCCCCeE
Q 040307 17 QWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLI-FD----HPYTPTNIAFFPSEETLNPDIV 91 (339)
Q Consensus 17 ~~~v~~i~~sp~~~~~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~----~~~~v~~l~~~~~~~~~~~~~l 91 (339)
...|.+|+++|. +...+.+++ ..+.|.. ....+..... ... .. ....|.+|++.|...+ .++
T Consensus 14 ~g~i~~i~~~p~--~~~~~~a~~----~~ggv~r--S~DgG~tW~~--~~~~~~~~~~~~~~i~~ia~dp~~~~---~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPK--TKDLLYART----DIGGAYR--WDAGTSKWIP--LNDFIEAQDMNIMGTESIALDPNNPD---RLY 80 (789)
T ss_dssp CSCEEEEEECSS--STTCEEEEE----SSSCEEE--EETTTTEEEE--SCTTCCGGGGGGCSEEEEEEETTEEE---EEE
T ss_pred CCcEEEEEECCC--CCCEEEEEe----cCCCEEE--ecCCCCCeeE--CccCCCcccccCCceeEEEECCCCCC---EEE
Confidence 468999999997 234555555 4565544 5555555543 110 00 1246999999985421 344
Q ss_pred EEeCC-c----EEEEeecCCc--ceeEEEeecCCCcc---CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 040307 92 ATSGD-S----LRLWEIHDDR--TELKSLLNSNKTSE---FSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQ 161 (339)
Q Consensus 92 a~~~~-~----i~iw~~~~~~--~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 161 (339)
+..+. . -.||...++. ++.... ...... ....+..++++|.+.+.+..+...+.|.. ....++....
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~--~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~ 157 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYES--PFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTN 157 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEEC--SSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEE
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccC--CcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCC
Confidence 44433 3 5666655432 222211 000000 00135568888756667777664444332 2233443222
Q ss_pred eec------cCCceeEEEec--CCcEEEEEeCC
Q 040307 162 LVA------HDREVYDISWG--GFNVFASVSGD 186 (339)
Q Consensus 162 ~~~------~~~~v~~~~~~--~~~~l~~~~~d 186 (339)
+.. ....+..+.++ +++.++.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 158 VTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp ETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred CccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 221 12457788887 34455555554
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.70 E-value=92 Score=29.78 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=28.9
Q ss_pred CCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEE
Q 040307 211 CPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVL 251 (339)
Q Consensus 211 ~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 251 (339)
..+.+++..+ +..++++-+.|++ +++|++.+ ++++.+.
T Consensus 236 ~~~~~~~~~~-~~~~lftl~~D~~-LRiWsl~t-~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLS-TYNVLVMLSLDYK-LKVLDLST-NQCVETI 273 (950)
T ss_dssp TCEEEEEEET-TTTEEEEEETTCE-EEEEETTT-TEEEEEE
T ss_pred ceEEEEeecC-CCcEEEEEECCCE-EEEEECCC-CCeEeee
Confidence 3566777775 7789999999999 99999987 5445443
No 362
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.86 E-value=22 Score=31.80 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=35.1
Q ss_pred eEEEeccCCCCeEEEEeCC----------CcEEEE--EecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceE
Q 040307 259 NGISWAPLYGRRLCSVADD----------SRALIW--EVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWI 326 (339)
Q Consensus 259 ~~~~~~p~~~~~l~~~~~d----------g~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 326 (339)
-.|+|+|.|. +++.-..+ +.-.+| +...++ +.++..-.....++.++|+||++.|+
T Consensus 479 DNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~-----------~~rf~~~P~gaE~TG~~fspDg~tlf 546 (592)
T 3zwu_A 479 DGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGE-----------IRRFMVGPIGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp EEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCC-----------EEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred cceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCe-----------EEEEEeCCCCccCcCeeECCCCCEEE
Confidence 4689999984 55554332 122333 333333 23334434567899999999998876
Q ss_pred EE
Q 040307 327 AI 328 (339)
Q Consensus 327 ~~ 328 (339)
..
T Consensus 547 vn 548 (592)
T 3zwu_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.88 E-value=19 Score=34.43 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL 162 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 162 (339)
..+.++...+ +..++++-+.|+++++|++.+++++.+.
T Consensus 236 ~~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3566777775 7789999999999999999999877765
No 364
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=57.75 E-value=68 Score=25.29 Aligned_cols=208 Identities=13% Similarity=0.088 Sum_probs=108.1
Q ss_pred CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCCCCCCCeEEEeCCcEEEEeecCCcceeEEEeecCCCccCCC
Q 040307 45 SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSS 124 (339)
Q Consensus 45 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~la~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 124 (339)
+|.|..|-.+.....-.. ......|..++..... .+++ -.+.|..|-.+... .+.....-. .
T Consensus 41 ~G~v~~wG~n~~Gqlg~p-----~~~~~~i~~ia~G~~h-----s~~l-~~G~v~~wG~n~~G--qlg~P~~~~-----~ 102 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMP-----AATQSGVDAIAAGNYH-----SLAL-KDGEVIAWGGNEDG--QTTVPAEAR-----S 102 (282)
T ss_dssp TTEEEEEECCSSSTTSCC-----GGGGSCCCEEEECSSE-----EEEE-ETTEEEEEECCTTS--TTCCCGGGS-----S
T ss_pred CCEEEEEeCCCCCCCCCC-----ccCCCCEEEEEeCCCE-----EEEE-ECCEEEEeeCCCCC--CCCCCcccC-----C
Confidence 688888765543322111 1122356677665554 3333 33377777765432 111000001 4
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccCCceeEEEecCCcEEEEEeCCCcEEEEECCCCcceeeEE
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIY 204 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 204 (339)
.|..++... ...++. . +|.|+.|-......+.........|..++-.....++. . ||.|+.|-...........
T Consensus 103 ~v~~ia~G~--~hs~al-~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gqlg~p~ 176 (282)
T 3qhy_B 103 GVDAIAAGA--WASYAL-K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFGQTTVPA 176 (282)
T ss_dssp SEEEEEEET--TEEEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTSTTSCCG
T ss_pred CeEEEECcC--CEEEEE-e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCCCCCCce
Confidence 677777652 333333 4 99999998654322211112234576766653333443 3 7999999776543222111
Q ss_pred eCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEecCCCCeeEEEeccCCCCeEEEEeCCCcEEEEE
Q 040307 205 ENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWE 284 (339)
Q Consensus 205 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd 284 (339)
. ....|..++-. ....++. .++. ++.|-.....+.-.. ......|..|+..... .++.. ||.|..|=
T Consensus 177 ~---~~~~v~~i~~G--~~hs~al--~~G~-v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~h--~~al~--~g~v~~wG 243 (282)
T 3qhy_B 177 E---AQSGVDDVAGG--IFHSLAL--KDGK-VIAWGDNRYKQTTVP-TEALSGVSAIASGEWY--SLALK--NGKVIAWG 243 (282)
T ss_dssp G---GGSSEEEEEEC--SSEEEEE--ETTE-EEEEECCTTSTTCCC-GGGGSSCCEEEECSSC--EEEEE--TTEEEEES
T ss_pred e---cCCCeEEEEec--CCEEEEE--ECCe-EEEEECCCCCCCCCC-cccCCCceEEEcCCCE--EEEEE--CCEEEEec
Confidence 1 12467777653 2333444 5887 999976553332111 1112357777766654 33333 89999996
Q ss_pred ecCCC
Q 040307 285 VVGPG 289 (339)
Q Consensus 285 ~~~~~ 289 (339)
.....
T Consensus 244 ~n~~g 248 (282)
T 3qhy_B 244 SSRTA 248 (282)
T ss_dssp TTCCC
T ss_pred CCCCc
Confidence 65544
No 365
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=57.36 E-value=93 Score=26.75 Aligned_cols=111 Identities=6% Similarity=0.050 Sum_probs=56.5
Q ss_pred CceEEEEcCCCCCCCCCeEEEeCC-cEEEEeecCCc-ceeEEEeecCCCc----cCCCCEEEEEEcCC---CCCEEEEEe
Q 040307 73 TPTNIAFFPSEETLNPDIVATSGD-SLRLWEIHDDR-TELKSLLNSNKTS----EFSSAITSFDWAGF---DTRRVATCS 143 (339)
Q Consensus 73 ~v~~l~~~~~~~~~~~~~la~~~~-~i~iw~~~~~~-~~~~~~~~~~~~~----~~~~~i~~~~~~~~---~~~~l~~~~ 143 (339)
....|+|.|++.. ++|++--. .|++++.+... ...+..+...-.. ........|+|+|. ++.+.++-+
T Consensus 15 ~P~~~a~~pdG~~---rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 15 QPVGALHSGDGSQ---RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SEEEEECCSSSSC---CEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CceEEEECCCCCe---EEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 4579999999821 27777665 88888754321 1122222110000 01256789999982 234444333
Q ss_pred CC------------CeEEEEECCC----------Ceeeeeee--ccCCceeEEEec-CCcEEEEEeCC
Q 040307 144 VD------------TTCVIWDIDR----------EILETQLV--AHDREVYDISWG-GFNVFASVSGD 186 (339)
Q Consensus 144 ~d------------~~v~i~d~~~----------~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~d 186 (339)
.+ ..|.-|.+.. .+.+..+. ........|.|. ++.++++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 21 1344455532 12222222 112235789999 67777766543
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.94 E-value=33 Score=31.42 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLV 163 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 163 (339)
..|.++.+ +..++++-+.|.++|+|++++++++....
T Consensus 222 ~~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 34665555 46799999999999999999998777664
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=49.71 E-value=1e+02 Score=24.82 Aligned_cols=195 Identities=9% Similarity=-0.032 Sum_probs=104.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCee-------e--eeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEECCCCcce----
Q 040307 135 DTRRVATCSVDTTCVIWDIDREIL-------E--TQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFDLRDKERS---- 200 (339)
Q Consensus 135 ~~~~l~~~~~d~~v~i~d~~~~~~-------~--~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~---- 200 (339)
+...+++.+.+|.|+--.+..-+. + ..+.. .+.+..+... ..+.++..+..|.++-+....-...
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 567788899999999876543221 1 11222 2344444444 5667777788888776654321100
Q ss_pred -----eeEEeCCCCCCCeEEEEEecC--CCCeEEEEeeCCCeEEEEecCCC------CCceEEEecCCCCeeEEEeccCC
Q 040307 201 -----TIIYENPVQDCPLLRLEWNKA--DPRFMATVGMDSNKVVVLDIRFP------TNPVVVLSKHEGSVNGISWAPLY 267 (339)
Q Consensus 201 -----~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~d~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~p~~ 267 (339)
...... .....+..+...+. +..+++..+..|. ++-..+... +.....+.. .+.+..+......
T Consensus 86 ~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~-~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 86 KGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGK-IARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp --CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSE-EEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCe-EEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 001111 12245555543321 4567788888887 777766432 111122333 3455555554444
Q ss_pred CCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecCCeEEEEe
Q 040307 268 GRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLK 338 (339)
Q Consensus 268 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d~~v~~w~ 338 (339)
..++..+.+|.+..+....-. ..+........+.. .....|..+..-+++..+++.+..|......
T Consensus 163 -~~i~l~T~~G~~~r~~~~ev~---~~gR~~~Gv~~i~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 163 -EKVICLSKKGSAFIFNSRDVR---LTNRGTQGVCGMKL-KEGDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp -CEEEEEETTSEEEEEEGGGSC---BCCTTBCCEECCCC-CTTCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred -CEEEEEeCCCcEEEEEHHHcc---ccCCCCCCeEeEEe-CCCCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 478888889999888887632 00111111112222 2244566665555555678888888766543
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.57 E-value=19 Score=35.14 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=29.6
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQL 162 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 162 (339)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 344455554 7789999999999999999999877765
No 369
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=46.46 E-value=65 Score=28.66 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=15.8
Q ss_pred cceeEEEEecCCCCceEEE
Q 040307 310 MAEINVVRWSPLELDWIAI 328 (339)
Q Consensus 310 ~~~i~~~~~~p~~~~l~~~ 328 (339)
...++.++|+||++.|+..
T Consensus 530 ~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 530 GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TCEEEEEEECTTSSEEEEE
T ss_pred CccccCCEECCCCCEEEEE
Confidence 4679999999999887654
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.85 E-value=47 Score=32.50 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=25.2
Q ss_pred eEEEec-CCcEEEEEeCCCcEEEEECCCCcceee
Q 040307 170 YDISWG-GFNVFASVSGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 170 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~ 202 (339)
.+++.. +..++++-+.|+++|+|++.+++....
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 334444 567899999999999999999875443
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=38.05 E-value=1.7e+02 Score=24.18 Aligned_cols=201 Identities=10% Similarity=0.048 Sum_probs=101.6
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-----------eeeeeec-cCCceeEEEecCCcEEEEEeCCCcEEEE
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-----------LETQLVA-HDREVYDISWGGFNVFASVSGDCSVRVF 192 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d~~i~i~ 192 (339)
.+..++.+. .....+.-..||.|+.|-..... ....+.. ....|..++-. ....+....+|.|+.|
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G-~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG-GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTSCEEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-cCeEEEEeCCCeEEEe
Confidence 455566664 55666777889999999653210 0111111 12245555554 4455556679999999
Q ss_pred ECCCCc-----------ceeeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc---------e-EEE
Q 040307 193 DLRDKE-----------RSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP---------V-VVL 251 (339)
Q Consensus 193 d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~---------~-~~~ 251 (339)
-..... .+..+.. .....+..++... .....++-..++. |+.|-....++. . ..+
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~--~~~~~v~~ia~G~-g~~~t~~l~~~G~-v~~wG~n~~GqLG~g~~~~~~~p~~v 259 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEA--LQGHRVVDIACGS-GDAQTLCLTDDDT-VWSWGDGDYGKLGRGGSDGCKVPMKI 259 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGG--GTTSCEEEEEECC-SSCEEEEEETTTE-EEEEECCGGGTTSSSSCCCEEEEEEC
T ss_pred CCCCCCCcCCCCCcccccceEecc--cCCCeEEEEEEcC-CCcEEEEEccCCE-EEEEeCCCCCCCCCCCCCCccccEEe
Confidence 754311 1111111 1224566666542 2345555567777 999865432211 0 111
Q ss_pred ec-CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecc-cceeEEEEecCCCCceEEEe
Q 040307 252 SK-HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQS-MAEINVVRWSPLELDWIAIA 329 (339)
Q Consensus 252 ~~-~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l~~~~ 329 (339)
.. ....|..|+.... ..+.-..||.|..|=..... +...........|...... ...|..|+-... +.++..
T Consensus 260 ~~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~G-qLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~--h~~al~ 333 (389)
T 3kci_A 260 DSLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGDYH-RLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL--HCVCCT 333 (389)
T ss_dssp GGGTTSCEEEEEEETT---EEEEEETTSCEEEEECCGGG-TTCSSSCCCEEEEEECGGGTTCCEEEEEECSS--EEEEEE
T ss_pred cccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCCC-CCCCCCCccccCCeEeccCCCCCEEEEEeccC--eEEEEC
Confidence 11 1224666665443 34445678999999765432 1111111111123222221 234666664333 456677
Q ss_pred cCCeEEEE
Q 040307 330 FVNKLQLL 337 (339)
Q Consensus 330 ~d~~v~~w 337 (339)
.||.|..|
T Consensus 334 ~~G~v~~w 341 (389)
T 3kci_A 334 EDGEVYTW 341 (389)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEe
Confidence 88888777
No 372
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=37.85 E-value=62 Score=19.04 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=22.0
Q ss_pred ccEEEEeeeccccCCeEEEEecCCCCCcccc
Q 040307 32 KSRLAVGSFLEDYSNKIELVNFNPETSDFSA 62 (339)
Q Consensus 32 ~~~la~g~~~~~~~~~i~i~~~~~~~~~~~~ 62 (339)
...+++-. +|.|+||.++.++.++..
T Consensus 29 ~nhFgv~e-----~g~iKIykyde~tNeI~L 54 (72)
T 3kvp_A 29 HNHFGVME-----DGYIKIYEYNESRNEVKL 54 (72)
T ss_dssp TTEEEEEE-----TTEEEEEEEETTTTEEEE
T ss_pred CCEEEEEe-----CCEEEEEEeCCCCCeEEE
Confidence 55788777 899999999999888776
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.81 E-value=56 Score=29.93 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=25.9
Q ss_pred eeEEEecCCcEEEEEeCCCcEEEEECCCCcceee
Q 040307 169 VYDISWGGFNVFASVSGDCSVRVFDLRDKERSTI 202 (339)
Q Consensus 169 v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 202 (339)
|.++.+ +..++++-+.|.++|+|++++++....
T Consensus 224 Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t 256 (729)
T 3f7f_A 224 ISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQD 256 (729)
T ss_dssp EEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred EEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEe
Confidence 444444 478999999999999999999874433
No 374
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=30.29 E-value=2.4e+02 Score=23.49 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=100.1
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-----------eeeeeecc-CCceeEEEecCCcEEEEEeCCCcEEEE
Q 040307 125 AITSFDWAGFDTRRVATCSVDTTCVIWDIDREI-----------LETQLVAH-DREVYDISWGGFNVFASVSGDCSVRVF 192 (339)
Q Consensus 125 ~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-----------~~~~~~~~-~~~v~~~~~~~~~~l~~~~~d~~i~i~ 192 (339)
.|..++-. ....+.-..+|.|+.|-..... ....+... ...|..++-. ....+.-..+|.|+.|
T Consensus 122 ~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G-~~hs~alt~~G~v~~w 197 (406)
T 4d9s_A 122 RIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG-AEHTAAVTEDGDLYGW 197 (406)
T ss_dssp CEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-SSEEEEEETTSCEEEE
T ss_pred CEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC-CCeEEEEeCCCCEEEe
Confidence 57777653 3455556789999999754321 01111111 2245555544 4455556789999999
Q ss_pred ECCCCcce---------eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCc-------e---EEEec
Q 040307 193 DLRDKERS---------TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNP-------V---VVLSK 253 (339)
Q Consensus 193 d~~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~-------~---~~~~~ 253 (339)
-....... ............+..++. .....++-..++. |+.|-....++. . ..+..
T Consensus 198 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~ht~~l~~~G~-v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 273 (406)
T 4d9s_A 198 GWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC---GWRHTISVSYSGA-LYTYGWSKYGQLGHGDLEDHLIPHKLEA 273 (406)
T ss_dssp ECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE---CSSEEEEEETTCC-EEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred eCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE---CCCcEEEEcCCCC-EEEeeCCCCCCCCCCCCcCccccEEecc
Confidence 75432110 000001112235666654 3445555577787 999875443221 0 11111
Q ss_pred -CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeee-cccceeEEEEecCCCCceEEEecC
Q 040307 254 -HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCY-QSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 254 -~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
....|..|+.... ..+.-..||.|..|=..... +...........|.... .....|..|+-... +.++...+
T Consensus 274 ~~~~~v~~i~~G~~---hs~alt~~G~v~~wG~n~~G-qLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~--hs~alt~~ 347 (406)
T 4d9s_A 274 LSNSFISQISGGWR---HTMALTSDGKLYGWGWNKFG-QVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR--HTLAVTER 347 (406)
T ss_dssp GTTSCEEEEEECSS---EEEEEETTSCEEEEECCTTS-TTCSSSSSCEEEEEEECCGGGCCEEEEEECSS--EEEEEETT
T ss_pred cCCCCEEEEEecCC---EEEEEcCCCeEEEeeCCCCC-CCCCCCCCCCccCEEEeccCCCcEEEEEeCCC--eEEEEeCC
Confidence 1224666654433 44555678999999765533 11111111111222221 22345666664333 45667778
Q ss_pred CeEEEE
Q 040307 332 NKLQLL 337 (339)
Q Consensus 332 ~~v~~w 337 (339)
+.|..|
T Consensus 348 G~v~~w 353 (406)
T 4d9s_A 348 NNVFAW 353 (406)
T ss_dssp SCEEEE
T ss_pred CCEEEe
Confidence 888777
No 375
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=28.59 E-value=2.3e+02 Score=22.87 Aligned_cols=200 Identities=12% Similarity=0.007 Sum_probs=97.8
Q ss_pred CCEEEEE-EcCC-CCCEEEEEeCCCeEEEEECCCC-------eeeeeeeccCCceeEEEec-CCcEEEEEeCCCcEEEEE
Q 040307 124 SAITSFD-WAGF-DTRRVATCSVDTTCVIWDIDRE-------ILETQLVAHDREVYDISWG-GFNVFASVSGDCSVRVFD 193 (339)
Q Consensus 124 ~~i~~~~-~~~~-~~~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~i~d 193 (339)
..|..+. ..+. +...++..+.+|.++--.+..- .....+.. .+.+..+... ..+.++..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 3455443 3311 4678999999999998876442 22223333 3445555444 556777788889888887
Q ss_pred CC--CCcce------eeEEeCCCCCCCeEEEEEecCCCCeEEEEeeCCCeEEEEecCCCC------CceEEEe--cCCCC
Q 040307 194 LR--DKERS------TIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPT------NPVVVLS--KHEGS 257 (339)
Q Consensus 194 ~~--~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~------~~~~~~~--~~~~~ 257 (339)
.. .-... ...... .....|.++...+ .+..++..+..|. ++.-.+.... +-+..+. .-.+.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~-~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVR-EGTYLLVATSGGY-AKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECC-TTCEEEEEETTSE-EEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred CcccccCcCCcCCCCeeeecC-CCCCEEEEEEEEC-CCCEEEEEeCCCc-EEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 66 21100 000111 1234577766654 5567888888887 7776653211 1122121 11234
Q ss_pred eeEEEeccCCCCeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCC-CCceEEEecCC
Q 040307 258 VNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPL-ELDWIAIAFVN 332 (339)
Q Consensus 258 v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~l~~~~~d~ 332 (339)
+..+...... ..++..+.+|.+.-++...-.. .+........+. ......|.++...+. ...+++.+.+|
T Consensus 251 lv~~~~~~~~-~~i~l~T~~G~~ir~~~~~i~~---~gR~a~GV~~i~-l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 251 LVGALIVDDD-SELYAVTSGGGVIRTAARQVRK---AGRQTKGVRLMN-LGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp EEEEEEECTT-CEEEEEEGGGCEEEEEGGGSCB---CCTTSCCEECTT-CCTTCCEEEEEECC-------------
T ss_pred EEEEEEeCCC-ccEEEEcCCCeEEEEehhhccc---cCCCCCCeEeEe-cCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 5444443333 3566677778877777665330 001111111111 123455666665543 34466665544
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=28.01 E-value=2.3e+02 Score=25.25 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=34.8
Q ss_pred CCeeEEEeeecCCcccEEEEeeec----ccc--CCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC
Q 040307 18 WPISTVAWSVRHDRKSRLAVGSFL----EDY--SNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE 84 (339)
Q Consensus 18 ~~v~~i~~sp~~~~~~~la~g~~~----~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 84 (339)
.....|.|.++ |.+.++-... +.. .+.=.+|.++...+++.. .+.......++.++|+||++
T Consensus 476 nsPDnL~fd~~---G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~--fl~~P~~aEpnGiafSPD~k 543 (592)
T 4a9v_A 476 NSPDGLGFDKA---GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR--FMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp CCEEEEEECTT---CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE--EEECCTTCEEEEEEECTTSS
T ss_pred CCCCceEECCC---CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE--EEeCCCCccccCCEECCCCC
Confidence 34567888888 8766532210 000 011145557776666654 22112345689999999993
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=26.67 E-value=1.7e+02 Score=26.08 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=34.0
Q ss_pred eeEEEeeecCCcccEEEEeeeccc------cCCeEEEEecCCCCCcccceeeEeecCCCCceEEEEcCCCC
Q 040307 20 ISTVAWSVRHDRKSRLAVGSFLED------YSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEE 84 (339)
Q Consensus 20 v~~i~~sp~~~~~~~la~g~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 84 (339)
.-.|+|+|. |.++++-..... ..+.-.+|-.+...+++.. .+.......++.+.|+||++
T Consensus 478 PDNL~fd~~---G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~r--f~~~P~gaE~TG~~fspDg~ 543 (592)
T 3zwu_A 478 PDGLGFDKA---GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR--FMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp EEEEEECTT---CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEE--EEECCTTCEEEEEEECTTSS
T ss_pred CcceEECCC---CCEEEEecCCCcccccccccccceEEEEeCCCCeEEE--EEeCCCCccCcCeeECCCCC
Confidence 456788888 875554331000 0012344446666666554 23234557899999999983
No 378
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=24.54 E-value=4.2e+02 Score=24.45 Aligned_cols=159 Identities=7% Similarity=-0.094 Sum_probs=82.0
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeec------------cCCceeEEEecC--CcEEEEEeCC---
Q 040307 124 SAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVA------------HDREVYDISWGG--FNVFASVSGD--- 186 (339)
Q Consensus 124 ~~i~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------~~~~v~~~~~~~--~~~l~~~~~d--- 186 (339)
..|.+|.++|.+.+.+.++...|.|...+ ..++.-..+.. ....+.++++++ .+.+..+..+
T Consensus 21 g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~ 99 (763)
T 3a0f_A 21 GFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQ 99 (763)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTT
T ss_pred CceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccccc
Confidence 68999999997777888888777665443 23332222211 123588888873 3444433321
Q ss_pred --CcEEEEECCC-CcceeeEEeCCC----CCCC--eEEEEEecCCCCeEEEEeeCCCeEEEEecCCCCCceEEEec----
Q 040307 187 --CSVRVFDLRD-KERSTIIYENPV----QDCP--LLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSK---- 253 (339)
Q Consensus 187 --~~i~i~d~~~-~~~~~~~~~~~~----~~~~--v~~~~~~p~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---- 253 (339)
....||.... ++.-..+..... .... ...++++|.+...++++...+. ||-....++.-..+..
T Consensus 100 ~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~---l~~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 100 WDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQG---LWRSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSC---EEEESSTTSSCEECTTSCCC
T ss_pred CCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCc---EEEECCCCcCccccccCccc
Confidence 1234554433 332222221100 0111 1468888866666766665543 3333333333333321
Q ss_pred --CCCCeeEEEeccCCCCeEEEEeCCCcEEEEEecC
Q 040307 254 --HEGSVNGISWAPLYGRRLCSVADDSRALIWEVVG 287 (339)
Q Consensus 254 --~~~~v~~~~~~p~~~~~l~~~~~dg~v~iwd~~~ 287 (339)
....+..|+++|..+..++.+..++. .||....
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~g-~v~~S~D 211 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAVG-GLWVTWD 211 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESSTT-CEEEESS
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCCC-eEEEECC
Confidence 11347788999875455666665543 4454444
No 379
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.29 E-value=2.5e+02 Score=24.38 Aligned_cols=70 Identities=7% Similarity=0.036 Sum_probs=41.6
Q ss_pred CeEEEEEecC---CC--CeEEEEeeCCCeEEEEecCCC------CCceEEEec--CCCCeeEEEeccCCCCeEEEEeCCC
Q 040307 212 PLLRLEWNKA---DP--RFMATVGMDSNKVVVLDIRFP------TNPVVVLSK--HEGSVNGISWAPLYGRRLCSVADDS 278 (339)
Q Consensus 212 ~v~~~~~~p~---~~--~~l~~~~~d~~~i~i~d~~~~------~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg 278 (339)
..++|+.... ++ ..+..|+.+|...++.-.... ...+.++.. ...+|..+.++++. ..|..++.++
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~-~~Lyv~s~~~ 483 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQ-QQLYIGSTAG 483 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTT-TEEEEEBSSC
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCC-CEEEEEECCe
Confidence 3566665431 12 356678888874455443221 113344443 35689999999998 5899998877
Q ss_pred cEEE
Q 040307 279 RALI 282 (339)
Q Consensus 279 ~v~i 282 (339)
.++|
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.21 E-value=3.5e+02 Score=23.46 Aligned_cols=78 Identities=12% Similarity=-0.062 Sum_probs=42.8
Q ss_pred CeeEEEeccC----CC-CeEEEEeCCCcEEEEEecCCCCCCCCCCCCCcccceeeecccceeEEEEecCCCCceEEEecC
Q 040307 257 SVNGISWAPL----YG-RRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFV 331 (339)
Q Consensus 257 ~v~~~~~~p~----~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d 331 (339)
..++|+...- +. .++..|+.+|.|.=.-+........ ...-.++.+.......+|..+.++++..+|+.++.+
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~--~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~ 482 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHD--LEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTA 482 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-------------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccc--cceEEEEEEeecCCCCccceEEEcCCCCEEEEEECC
Confidence 4566666532 21 3677888899764433322110000 000001111222345789999999999889899888
Q ss_pred CeEEE
Q 040307 332 NKLQL 336 (339)
Q Consensus 332 ~~v~~ 336 (339)
+.++|
T Consensus 483 ~V~~v 487 (495)
T 1q47_A 483 GVAQL 487 (495)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87765
No 381
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=21.14 E-value=3.6e+02 Score=22.43 Aligned_cols=173 Identities=9% Similarity=0.061 Sum_probs=86.0
Q ss_pred cEEEEeecCC--cceeEEEeecCCCccCCCCEEEEEEc---CC---CCCEEEEEe-CCCeEEEEECCCCeeeeeeecc--
Q 040307 97 SLRLWEIHDD--RTELKSLLNSNKTSEFSSAITSFDWA---GF---DTRRVATCS-VDTTCVIWDIDREILETQLVAH-- 165 (339)
Q Consensus 97 ~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~-- 165 (339)
.|.+||+.++ +......+...... ....+..+.+. |. ++.++..+. ..+.|.|+|+.+++..+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 6889999998 73333333322111 12467788876 21 133444443 4678999999988755544100
Q ss_pred ----------------CCceeEEEec-C----CcEEEEEeCCCcEEEEECC-----CCc---ceeeEEeCCCCCCCeEEE
Q 040307 166 ----------------DREVYDISWG-G----FNVFASVSGDCSVRVFDLR-----DKE---RSTIIYENPVQDCPLLRL 216 (339)
Q Consensus 166 ----------------~~~v~~~~~~-~----~~~l~~~~~d~~i~i~d~~-----~~~---~~~~~~~~~~~~~~v~~~ 216 (339)
...+..|+.+ + ++.|.-....+. ++|.+. ... ....+... .....-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNR-GKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeec-CCCCCcceE
Confidence 1355666666 3 345554444332 233322 211 11111111 111334456
Q ss_pred EEecCCCCeEEEEeeCCCeEEEEecCC-CC--CceEEEecCC--CCeeEEEeccCCCCeEEEE
Q 040307 217 EWNKADPRFMATVGMDSNKVVVLDIRF-PT--NPVVVLSKHE--GSVNGISWAPLYGRRLCSV 274 (339)
Q Consensus 217 ~~~p~~~~~l~~~~~d~~~i~i~d~~~-~~--~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~ 274 (339)
+..+.+|.++++--.... |..|+... .- .....+.... .....+.+.+++ .+.+..
T Consensus 281 ~~D~~~G~ly~~~~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g-~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG-GLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS-CEEEEE
T ss_pred EEeCCCCeEEEEeccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCC-eEEEEE
Confidence 675436655555555555 99999864 21 1122222211 245667776666 343433
Done!