BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040308
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 21 ALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQ 80
A W ++ + + + ++LHVQ G + + P F ++++
Sbjct: 30 AFEWTLEKIVRSNTSDFKILLLHVQV--VDEDGFDDVDSIYASPED-----FRDXRQSNK 82
Query: 81 GRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRM 140
+ +++ + C E V ++ + GD K+ +C+ V+++ D LV+GS G +++
Sbjct: 83 AKGLH-LLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKV 141
Query: 141 FLGSVSNYCANHAQCPVVVVK 161
F+G+VS +C HA+CPV +K
Sbjct: 142 FVGTVSAFCVKHAECPVXTIK 162
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
Length = 309
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 8 VIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHV 67
+IV +D + A+RWA + +LR + P T+ ++P + +
Sbjct: 22 IIVGIDDSPAAQVAVRWAARDAELR------------KIPLTLVHAVSPEVATW-----L 64
Query: 68 EVPAFTAAIEAHQGRITQAIIDHALKICSEKNVN-----VKSEVVIGDAKEKVCELVEKL 122
EVP + Q + +ID ALK+ + ++ V SE+V A + ++ +
Sbjct: 65 EVPLPPGVLRWQQDH-GRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSKD- 122
Query: 123 HADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGKGT 165
A L+V+G G LGSVS+ HA CPVV++ + +
Sbjct: 123 -AVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDS 164
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 83 ITQAIIDHALKICSEKNVNVK-SEVVIGDAKEKVCELVEKLH-ADLLVMGSHTFGPIKRM 140
+ + ++ L E+ NV + VV+ D + +LV++ A L+V+GS G M
Sbjct: 227 MAEQVLAERLAGWQERYPNVAITRVVVRDQPAR--QLVQRSEEAQLVVVGSRGRGGYAGM 284
Query: 141 FLGSVSNYCANHAQCPVVVVK 161
+GSV A A+ PV+V +
Sbjct: 285 LVGSVGETVAQLARTPVIVAR 305
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 102 VKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
VK +V+G E++ ++ E D+++MGSH +K + LGSV+ + PV+VVK
Sbjct: 99 VKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158
Query: 162 GKGT 165
K +
Sbjct: 159 RKNS 162
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
Tuberculosis
Length = 305
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 28/166 (16%)
Query: 2 SGN--LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAI 59
SGN LG +IV +D + A+RWA + +LR + P T+ ++P
Sbjct: 3 SGNSSLG-IIVGIDDSPAAQVAVRWAARDAELR------------KIPLTLVHAVSPEVA 49
Query: 60 PFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSEKNVN-----VKSEVVIGDAKEK 114
+ +EVP + Q + +ID ALK+ + ++ V SE+V A
Sbjct: 50 TW-----LEVPLPPGVLRWQQDH-GRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPT 103
Query: 115 VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+ + + A L V+G G LGSVS+ HA CPVV++
Sbjct: 104 LVDXSKD--AVLXVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 147
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 85 QAIIDHALKICSEKNVNVK-SEVVIGDAKEKVCELVEKLH-ADLLVMGSHTFGPIKRMFL 142
+ ++ L E+ NV + VV+ D + +LV++ A L+V+GS G +
Sbjct: 217 EQVLAERLAGWQERYPNVAITRVVVRDQPAR--QLVQRSEEAQLVVVGSRGRGGYAGXLV 274
Query: 143 GSVSNYCANHAQCPVVVVK 161
GSV A A+ PV+V +
Sbjct: 275 GSVGETVAQLARTPVIVAR 293
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 113 EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
E + + ADL+VMG+ G + +FLGS S A CPV++V+
Sbjct: 89 EAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 106 VVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+V G+ +E++ + E+ + DL+V+GSH + + LGS +N ++A+C V+ V+
Sbjct: 92 LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 106 VVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+V G+ +E++ + E+ + DL+V+GSH + + LGS +N ++A+C V+ V+
Sbjct: 92 LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
Length = 144
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
G K+K+ L + L ADL+++ SH I LGS + HA+C V+VV+
Sbjct: 93 GSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>pdb|3FDX|A Chain A, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae.
pdb|3FDX|B Chain B, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae
Length = 143
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
G K+K+ L + L ADL+++ SH I LGS + HA+C V+VV+
Sbjct: 92 GSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHA--DLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158
N+K+E+ G K + E K H DL+V+G+ R+ +GS ++Y +HA C V+
Sbjct: 85 NLKTEISYGIPKHTI-EDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVI 143
Query: 159 VVK 161
V++
Sbjct: 144 VIR 146
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
V++ V G + K DL+V+G+ K + LGSV+ A A CPV+VV
Sbjct: 88 KVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|3AB7|A Chain A, Crystal Structure Of The Hypothetical Tandem-Type
Universal Stress Protein Ttha0350 From Thermus
Thermophilus Hb8
pdb|3AB7|B Chain B, Crystal Structure Of The Hypothetical Tandem-Type
Universal Stress Protein Ttha0350 From Thermus
Thermophilus Hb8
pdb|3AB8|A Chain A, Crystal Structure Of The Hypothetical Tandem-Type
Universal Stress Protein Ttha0350 Complexed With Atps.
pdb|3AB8|B Chain B, Crystal Structure Of The Hypothetical Tandem-Type
Universal Stress Protein Ttha0350 Complexed With Atps
Length = 268
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 95 CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQ 154
+ V + V+ GDA + + L + DLL +G+ P++R+ GS + +AQ
Sbjct: 208 LRDHGVEASALVLGGDAADHLLRL--QGPGDLLALGA----PVRRLVFGSTAERVIRNAQ 261
Query: 155 CPVVVVK 161
PV+ +
Sbjct: 262 GPVLTAR 268
>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length = 163
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
NV+ ++G + + L ++ ADLLV+G+ I LGSV + A+ V++V
Sbjct: 97 NVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156
>pdb|1SUM|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.0 A
Resolution
Length = 235
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 84 TQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFL- 142
T ++ AL++ ++ NV EV D+K V +L EK+ +LL+ + +KR L
Sbjct: 126 TSEMLKFALRMFADVNVEKSFEVCRMDSK--VDDLYEKVREELLLYMMESPKYVKRALLL 183
Query: 143 -------GSVSNYCANHAQCPVVVVKGKG 164
+++Y N + V +V+G+
Sbjct: 184 LEIAGNIEIIADYATNIVEVSVYMVQGEA 212
>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
Length = 170
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 37 GSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICS 96
G I+LHV T+ L G F + +E+ ++ R Q + +
Sbjct: 34 GEVILLHVIDEGTLEE-LMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFR 92
Query: 97 EKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCP 156
KNV ++ + G +++ ++ E+ + L+++ S + FLGS + P
Sbjct: 93 AKNV--RTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKP 150
Query: 157 VVVVK 161
V+++K
Sbjct: 151 VLIIK 155
>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
Proteus Mirabilis Hi4320
Length = 319
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 103 KSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162
K+ V G ++ + ++ E+L+A ++V+G + FLG+ + +H +C ++ +K
Sbjct: 246 KTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305
Query: 163 KGTS 166
G +
Sbjct: 306 DGFT 309
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 106 VVIGDAKEKVCELVEKLHADLLVMGSHTFGPI 137
V G + + +C+L+ D+L +G H FG I
Sbjct: 345 VYSGGSSDTICDLLGAKGKDILYIGDHIFGDI 376
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 106 VVIGDAKEKVCELVEKLHADLLVMGSHTFGPI 137
V G + + +C+L+ D+L +G H FG I
Sbjct: 344 VYSGGSSDTICDLLGAKGKDILYIGDHIFGDI 375
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 106 VVIGDAKEKVCELVEKLHADLLVMGSHTFGPI 137
V G + + +C+L+ D+L +G H FG I
Sbjct: 345 VYSGGSSDTICDLLGAKGKDILYIGDHIFGDI 376
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 106 VVIGDAKEKVCELVEKLHADLLVMGSHTFGPI 137
V G + + +C+L+ D+L +G H FG I
Sbjct: 345 VYSGGSSDTICDLLGAKGKDILYIGDHIFGDI 376
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,204,797
Number of Sequences: 62578
Number of extensions: 207705
Number of successful extensions: 483
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 23
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)