BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040308
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 21 ALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQ 80
A W ++ + + + ++LHVQ G + + P F ++++
Sbjct: 30 AFEWTLEKIVRSNTSDFKILLLHVQV--VDEDGFDDVDSIYASPED-----FRDMRQSNK 82
Query: 81 GRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRM 140
+ +++ + C E V ++ + GD K+ +C+ V+++ D LV+GS G +++
Sbjct: 83 AKGLH-LLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKV 141
Query: 141 FLGSVSNYCANHAQCPVVVVK 161
F+G+VS +C HA+CPV+ +K
Sbjct: 142 FVGTVSAFCVKHAECPVMTIK 162
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168)
GN=nhaX PE=2 SV=2
Length = 166
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 8 VIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLH---------VQPPPTIAAGLNPGA 58
+IVA DG E S AL AID L + V H V PP AA +
Sbjct: 7 IIVAFDGSENSKKALLTAID---LAKTVNAAITVAHSHDMKDNQTVIDPPRPAA---EAS 60
Query: 59 IPFGGPSHVEVPAFTAAIE----AHQGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEK 114
GG + V P + ++ R T+ +I A + +E+ + +++ GD E
Sbjct: 61 YISGGMTSVPDPLISDVTSPEPMIYEDR-TEEVIAEARMMLNEQQADGDIDILEGDPAES 119
Query: 115 VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+ E ++ AD++V GS +K++ GSVS + + PV++VK
Sbjct: 120 IIEHANRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVLIVK 166
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPS 65
G ++VA+D E + + L+ AI L +V + P + + P F G +
Sbjct: 4 GKILVALDRSELAKEVLQQAI---ALGQKESSQLMVFYCIPVDSQDLSIYP---SFYGEA 57
Query: 66 HVEVPAFTAAIEAH---QGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKL 122
+ F+ I+ H Q + + ++ E V + +V +G+ + ++ +
Sbjct: 58 AI---GFSQIIKEHLEEQQTEAREWLQSIVQQVQEDGVACEWDVKVGEPGRWIRDMAKNW 114
Query: 123 HADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
ADL+V+G + +FLGSVS+Y +H QC V++V+
Sbjct: 115 DADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIVQ 153
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 85 QAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGS 144
Q + K+ E V + +E++ G ++ E EK ADL+VMG+ ++R+ LGS
Sbjct: 89 QEALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGS 148
Query: 145 VSNYCANHAQCPVVVVK 161
V+ +A CPV+VVK
Sbjct: 149 VAERVIKNAHCPVLVVK 165
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 76 IEAHQGRITQAIIDHALKICSEK--NVNVKSEVVIGD-AKEKVCELVEKLHADLLVMGSH 132
+E+ Q + I + LK+ S+ V V EV+ + AK + E+++ + L+VMGS
Sbjct: 481 MESEQLETLEKITKYILKLLSKTVLEVEVNIEVIHHEKAKHLIIEMIDYIEPSLVVMGSR 540
Query: 133 TFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163
+K + LGS SNY N + PV+V + K
Sbjct: 541 GRSHLKGVLLGSFSNYLVNKSSVPVMVARKK 571
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 8 VIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHV 67
V++ +DG S A A D R + LHV ++ G IP GP+
Sbjct: 161 VLLGIDGSPASEVATSHAFDEASRRGV---DLVALHVW--------IDVGDIPPIGPTWE 209
Query: 68 EVPAFTAAIEAHQGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLL 127
E Q +A++ L E+ +VK + A+ L E A L+
Sbjct: 210 E-----------QEETGRALLAERLAGWQERYPDVKVHRRVERAQPAYWLLEEAKQAQLV 258
Query: 128 VMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
V+GSH G M LGSVS+ A A PV+VV+
Sbjct: 259 VVGSHGRGGFTGMLLGSVSSRVAQSATTPVMVVR 292
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 29/162 (17%)
Query: 8 VIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHV 67
++V VD ES A+RWA L AP ++HV P ++ P G
Sbjct: 10 ILVGVDSSAESDAAVRWAAREASLHD-AP--ITLMHVIAPVVVS-------WPAG----- 54
Query: 68 EVPAFTAAIEAHQGRITQAIIDHALKICSE-----KNVNVKSEVVIGDAKEKVCELV--E 120
P +E + AI + A K+ ++ + V++E+ KE V +
Sbjct: 55 --PYMATVLECQEENARHAI-EQAQKVVADCLGETHGLTVQTEI----RKESVARTLIDA 107
Query: 121 KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162
A ++V+G+ G + R+ LGS S ++A PVVVV G
Sbjct: 108 SKSAQMVVVGNRGMGALGRVLLGSTSTSLLHYASGPVVVVHG 149
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168)
GN=yxiE PE=3 SV=1
Length = 148
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 8 VIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHV 67
++VA+DG + S AL A+ L +LHV + G + P H
Sbjct: 5 MLVAIDGSDMSAKALDAAVH---LAKEQQAELSILHVGREAVVTTSSLTGIVYV--PEH- 58
Query: 68 EVPAFTAAIEAHQGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLL 127
F I + I+++A + +EK V ++ G+ ++ ++ L+
Sbjct: 59 ----FIDEIRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLI 114
Query: 128 VMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
V+GS +K M LGSVS+ + + CPV++V+
Sbjct: 115 VVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR 148
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 39/165 (23%)
Query: 8 VIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHV-------QPPPTIAAGLNPGAIP 60
V+V VDG ES A W + +R+ V+HV PP +P
Sbjct: 10 VVVGVDGSLESDAAACWGATDAAMRNI---PLTVVHVVNADVATWPP-----------MP 55
Query: 61 FGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSE-----KNVNVKSEVVIGDAKEKV 115
+ P + +GR I+ +A+K+ E + ++VKSE+V +
Sbjct: 56 Y--------PETWGVWQEDEGR---QIVANAVKLAKEAVGADRKLSVKSELVFSTPVPTM 104
Query: 116 CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
E+ + A+++V+GS G + R LGSVS+ A CPV V+
Sbjct: 105 VEISNE--AEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 104 SEVVIGDAKEKVCELVEK-LHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
S VV+ D + +LV+K A L+V+GSH G + M LGSVSN + A+ PV+V +
Sbjct: 237 SRVVVCDRPAR--KLVQKSASAQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 293
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 39/165 (23%)
Query: 8 VIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHV-------QPPPTIAAGLNPGAIP 60
V+V VDG ES A W + +R+ V+HV PP +P
Sbjct: 10 VVVGVDGSLESDAAACWGATDAAMRNI---PLTVVHVVNADVATWPP-----------MP 55
Query: 61 FGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSE-----KNVNVKSEVVIGDAKEKV 115
+ P + +GR I+ +A+K+ E + ++VKSE+V +
Sbjct: 56 Y--------PETWGVWQEDEGR---QIVANAVKLAKEAVGADRKLSVKSELVFSTPVPTM 104
Query: 116 CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
E+ + A+++V+GS G + R LGSVS+ A CPV V+
Sbjct: 105 VEISNE--AEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 104 SEVVIGDAKEKVCELVEK-LHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
S VV+ D + +LV+K A L+V+GSH G + M LGSVSN + A+ PV+V +
Sbjct: 237 SRVVVCDRPAR--KLVQKSASAQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 293
>sp|O06189|Y2623_MYCTU Universal stress protein Rv2623/MT2698 OS=Mycobacterium
tuberculosis GN=Rv2623 PE=1 SV=1
Length = 297
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 2 SGN--LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAI 59
SGN LG +IV +D + A+RWA + +LR + P T+ ++P
Sbjct: 3 SGNSSLG-IIVGIDDSPAAQVAVRWAARDAELR------------KIPLTLVHAVSPEVA 49
Query: 60 PFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSEKNVN-----VKSEVVIGDAKEK 114
+ +EVP + Q + +ID ALK+ + ++ V SE+V A
Sbjct: 50 TW-----LEVPLPPGVLRWQQDH-GRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPT 103
Query: 115 VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+ ++ + A L+V+G G LGSVS+ HA CPVV++
Sbjct: 104 LVDMSKD--AVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 147
>sp|Q57997|Y577_METJA Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0577 PE=1 SV=1
Length = 162
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 102 VKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
VK +V+G E++ ++ E D+++MGSH +K + LGSV+ + PV+VVK
Sbjct: 99 VKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158
Query: 162 GKGT 165
K +
Sbjct: 159 RKNS 162
>sp|P67091|USPF_SALTY Universal stress protein F OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspF PE=3 SV=1
Length = 144
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
V++ V G K+K+ E+ +KL AD++++ SH I LGS + HA+C V+VV
Sbjct: 85 RVQAHVAEGSPKDKILEMAKKLPADMVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVV 143
Query: 161 K 161
+
Sbjct: 144 R 144
>sp|P67092|USPF_SALTI Universal stress protein F OS=Salmonella typhi GN=uspF PE=3 SV=1
Length = 144
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
V++ V G K+K+ E+ +KL AD++++ SH I LGS + HA+C V+VV
Sbjct: 85 RVQAHVAEGSPKDKILEMAKKLPADMVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVV 143
Query: 161 K 161
+
Sbjct: 144 R 144
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1101 PE=3 SV=1
Length = 108
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 99 NVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158
++ ++E ++G + +C+ ++ ++D++V+G + + LGSV NY +HA C V
Sbjct: 43 DIECQAEQILGSPGKIICQRAKQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVF 102
Query: 159 VV 160
VV
Sbjct: 103 VV 104
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium
tuberculosis GN=Rv2026c PE=2 SV=1
Length = 294
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 85 QAIIDHALKICS-----EKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKR 139
Q +I+ A + + K V +E+V + + + ++ A L+V+GS G + R
Sbjct: 69 QQVIEQAREALTNSLGESKPPQVHTELVFSNVVPTLIDASQQ--AWLMVVGSQGMGALGR 126
Query: 140 MFLGSVSNYCANHAQCPVVVV-KGKGTS 166
+ LGS+S +HA+CPV ++ G G +
Sbjct: 127 LLLGSISTALLHHARCPVAIIHSGNGAT 154
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 99 NVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158
+V V +V + E E+ A L+V+GSH G M LGSVS+ A+ + PV+
Sbjct: 232 DVRVHRSLVCDKPARWLLEHSEQ--AQLVVVGSHGRGGFSGMLLGSVSSAVAHSVRIPVI 289
Query: 159 VVK 161
VV+
Sbjct: 290 VVR 292
>sp|P45680|USPA2_COXBU Universal stress protein A homolog 2 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA2 PE=1 SV=1
Length = 146
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 93 KICSEKNVNVKSEVV-IGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN 151
+I S+ N++ ++V +G AK + E + DL+++GSH I+ + LGS SN +
Sbjct: 74 EIASQLNISSDHQIVKVGPAKFLILEQAKNWGVDLIIVGSHGRHGIQ-LLLGSTSNAVLH 132
Query: 152 HAQCPVVVVKGKGT 165
A+C V+ V+ KG+
Sbjct: 133 GAKCDVLAVRIKGS 146
>sp|P39177|USPG_ECOLI Universal stress protein G OS=Escherichia coli (strain K12) GN=uspG
PE=1 SV=2
Length = 142
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+K V G +++V EL E+L AD++V+GS I LGS ++ HA PV+VV
Sbjct: 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVV 141
Query: 161 K 161
+
Sbjct: 142 R 142
>sp|Q83M07|USPG_SHIFL Universal stress protein G OS=Shigella flexneri GN=uspG PE=3 SV=1
Length = 142
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+K V G +++V EL E+L AD++V+GS I LGS ++ HA PV+VV
Sbjct: 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVV 141
Query: 161 K 161
+
Sbjct: 142 R 142
>sp|P0A5F8|Y2019_MYCBO Universal stress protein Mb2019 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2019 PE=3 SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGG 63
NLG ++V VDG S A+ WA + ++R+ A V+ V PP A P F
Sbjct: 7 NLG-IVVGVDGSPCSHTAVEWAARDAQMRNVA---LRVVQVVPPVITA----PEGWAFEY 58
Query: 64 PSHVEVPAFTAAIEAHQGRITQA--IIDHALKICSE-----KNVNVKSEVVIGDAKEKVC 116
E A I H + QA I++ A K+ E + + EV+ G +
Sbjct: 59 SRFQE--AQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLA 116
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+ ++ ++V+G G + LGSVS+ HA PV V+
Sbjct: 117 NISRQV--AMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 114 KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
++ EL + A L+V+GSH G M LGSVS N Q PV+V +
Sbjct: 263 RLLELAQT--AQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVAR 308
>sp|P0A5F7|Y1996_MYCTU Universal stress protein Rv1996/MT2052 OS=Mycobacterium
tuberculosis GN=Rv1996 PE=1 SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGG 63
NLG ++V VDG S A+ WA + ++R+ A V+ V PP A P F
Sbjct: 7 NLG-IVVGVDGSPCSHTAVEWAARDAQMRNVA---LRVVQVVPPVITA----PEGWAFEY 58
Query: 64 PSHVEVPAFTAAIEAHQGRITQA--IIDHALKICSE-----KNVNVKSEVVIGDAKEKVC 116
E A I H + QA I++ A K+ E + + EV+ G +
Sbjct: 59 SRFQE--AQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLA 116
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+ ++ ++V+G G + LGSVS+ HA PV V+
Sbjct: 117 NISRQV--AMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 114 KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
++ EL + A L+V+GSH G M LGSVS N Q PV+V +
Sbjct: 263 RLLELAQT--AQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVAR 308
>sp|Q8XBT3|USPG_ECO57 Universal stress protein G OS=Escherichia coli O157:H7 GN=uspG PE=3
SV=1
Length = 142
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+K V G +++V EL E+L AD++V+GS I LGS ++ HA PV+VV
Sbjct: 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVV 141
Query: 161 K 161
+
Sbjct: 142 R 142
>sp|P74897|YQA3_THEAQ Universal stress protein in QAH/OAS sulfhydrylase 3'region
OS=Thermus aquaticus PE=3 SV=1
Length = 137
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 83 ITQAIIDHALKICSEKNVNVKSE-------------VVIGDAKEKVCELVEKLHADLLVM 129
+ + + ALK E+ V++E ++ G E + + ADL+VM
Sbjct: 46 LGEPFFEEALKRRLERAEKVRAEAMALTGVPREDALLLQGRPAEAILQAAIGEKADLIVM 105
Query: 130 GSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
G+ G + +FLGS S A CPV++V+
Sbjct: 106 GTRGLGAVGSLFLGSQSQKVVAEAPCPVLLVR 137
>sp|Q8FK07|USPG_ECOL6 Universal stress protein G OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspG PE=3 SV=2
Length = 142
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+K V G +++V EL ++L AD++V+GS I LGS ++ HA PV+VV
Sbjct: 83 RIKQHVRFGSVRDEVNELAKELDADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVV 141
Query: 161 K 161
+
Sbjct: 142 R 142
>sp|P64996|Y2346_MYCBO Universal stress protein Mb2346c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2346c PE=3 SV=1
Length = 292
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN 151
L+I + +V +VV G+ + + + ++L +G+ FG + R+FLGS S
Sbjct: 222 LRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIR 281
Query: 152 HAQCPVVVVKG 162
++ PV+V+ G
Sbjct: 282 YSPVPVLVLPG 292
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 115 VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159
+ ++VE+L A++LV+GS G R+ +GS ++ + + PV +
Sbjct: 95 LLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAI 139
>sp|P64995|Y2319_MYCTU Universal stress protein Rv2319c/MT2382 OS=Mycobacterium
tuberculosis GN=Rv2319c PE=3 SV=1
Length = 292
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN 151
L+I + +V +VV G+ + + + ++L +G+ FG + R+FLGS S
Sbjct: 222 LRINGVVSEDVVLQVVTGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIR 281
Query: 152 HAQCPVVVVKG 162
++ PV+V+ G
Sbjct: 282 YSPVPVLVLPG 292
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 115 VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159
+ ++VE+L A++LV+GS G R+ +GS ++ + + PV +
Sbjct: 95 LLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAI 139
>sp|P72817|Y1654_SYNY3 Universal stress protein Sll1654 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1654 PE=3 SV=1
Length = 157
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 87 IIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVS 146
+++ A + S++ + K+ G A +C++ ++++ADL+VMG G SV+
Sbjct: 83 LLEAAQAVFSQQGIATKTIEREGMASFTICDVADEVNADLIVMGCRGLGLTTEGVAESVT 142
Query: 147 NYCANHAQCPVVVV 160
N + CPV+VV
Sbjct: 143 ARVINLSPCPVLVV 156
>sp|P67093|USPG_SALTY Universal stress protein G OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspG PE=3 SV=1
Length = 142
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+K+ V G ++ V E+ E+L AD++V+GS I LGS ++ HA PV+VV
Sbjct: 83 RIKTHVRFGSVRDVVNEMGEELDADVVVIGSRN-PSITTHLLGSNASSVVRHATLPVLVV 141
Query: 161 K 161
+
Sbjct: 142 R 142
>sp|P67094|USPG_SALTI Universal stress protein G OS=Salmonella typhi GN=uspG PE=3 SV=1
Length = 142
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160
+K+ V G ++ V E+ E+L AD++V+GS I LGS ++ HA PV+VV
Sbjct: 83 RIKTHVRFGSVRDVVNEMGEELDADVVVIGSRN-PSITTHLLGSNASSVVRHATLPVLVV 141
Query: 161 K 161
+
Sbjct: 142 R 142
>sp|P73475|Y1230_SYNY3 Universal stress protein Slr1230 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1230 PE=3 SV=1
Length = 287
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCA 150
A K+ + ++ E+++G A+E + E DLL+MG+H I+ + +GS +
Sbjct: 217 AEKVLEKAGFKLEVELLVGHAEEAIVRYQEDNAIDLLLMGAHGHSRIRHLVIGSTTAQVL 276
Query: 151 NHAQCPVVVVK 161
PV+ +
Sbjct: 277 RKTSIPVLTFR 287
>sp|Q2FXL6|Y1819_STAA8 Putative universal stress protein SAOUHSC_01819 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_01819 PE=3 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q6GFZ7|Y1788_STAAR Putative universal stress protein SAR1788 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR1788 PE=3 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q5HF64|Y1759_STAAC Putative universal stress protein SACOL1759 OS=Staphylococcus
aureus (strain COL) GN=SACOL1759 PE=3 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q99TF3|Y1710_STAAM Putative universal stress protein SAV1710 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV1710 PE=1 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q2FG28|Y1656_STAA3 Putative universal stress protein SAUSA300_1656 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_1656 PE=3 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q7A0N0|Y1653_STAAW Putative universal stress protein MW1653 OS=Staphylococcus aureus
(strain MW2) GN=MW1653 PE=3 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q6G8L7|Y1637_STAAS Putative universal stress protein SAS1637 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS1637 PE=3 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q2YTD0|Y1569_STAAB Putative universal stress protein SAB1569 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB1569 PE=3 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q7A551|Y1532_STAAN Putative universal stress protein SA1532 OS=Staphylococcus aureus
(strain N315) GN=SA1532 PE=1 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
+L +++ADL++ G+ ++R +GSVS HA C V+VV+
Sbjct: 99 KLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q83AC1|USPA1_COXBU Universal stress protein A homolog 1 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA1 PE=3 SV=1
Length = 144
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 90 HALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYC 149
H +K+ SE+ + G K V EL EKL+ DL+V+G+H + ++ LGS +N
Sbjct: 76 HTVKVPSERQ-----HTLSGVVKHMVIELAEKLNIDLIVVGTHGHHGLDKL-LGSRANAI 129
Query: 150 ANHAQCPVVVVKGK 163
+ A C V+ V K
Sbjct: 130 LHVATCDVLAVWMK 143
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic
(Fragment) OS=Triticum aestivum PE=1 SV=1
Length = 543
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 52 AGLNPGAIPFGGPSHVE----VPAFTAAIEAHQGRITQAIIDHALKICSE---KNVNVKS 104
A + G +P GG ++V VPA IE H R+ II AL+ + N V+
Sbjct: 405 AAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEG 464
Query: 105 EVVIGDAKEKVCEL 118
EVVI KE E+
Sbjct: 465 EVVIEKIKESEWEM 478
>sp|P0A4P8|USPF_SHIFL Universal stress protein F OS=Shigella flexneri GN=uspF PE=3 SV=1
Length = 144
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
G K+++ EL +K+ A ++++ SH I LGS + HA+C V+VV+
Sbjct: 93 GSPKDRILELAKKIPAHMIIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P0A4P6|USPF_ECOL6 Universal stress protein F OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspF PE=3 SV=1
Length = 144
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
G K+++ EL +K+ A ++++ SH I LGS + HA+C V+VV+
Sbjct: 93 GSPKDRILELAKKIPAHMIIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|Q0TI19|USPF_ECOL5 Universal stress protein F OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=uspF PE=3 SV=1
Length = 144
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
G K+++ EL +K+ A ++++ SH I LGS + HA+C V+VV+
Sbjct: 93 GSPKDRILELAKKIPAHMIIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P0A4P7|USPF_ECO57 Universal stress protein F OS=Escherichia coli O157:H7 GN=uspF PE=3
SV=1
Length = 144
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
G K+++ EL +K+ A ++++ SH I LGS + HA+C V+VV+
Sbjct: 93 GSPKDRILELAKKIPAHMIIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P37903|USPF_ECOLI Universal stress protein F OS=Escherichia coli (strain K12) GN=uspF
PE=1 SV=2
Length = 144
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161
G K+++ EL +K+ A ++++ SH I LGS + HA+C V+VV+
Sbjct: 93 GSPKDRILELAKKIPAHMIIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|Q4L751|Y1215_STAHJ Putative universal stress protein SH1215 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH1215 PE=3 SV=1
Length = 165
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 101 NVKSEVVIGDAKEKV-CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159
NV++ + G K + +L +L DL++ G+ ++R +GSVS HA C V+V
Sbjct: 82 NVETRLEFGSPKAIIPKKLASELGVDLIMCGTSGLNAVERFIVGSVSEAIVRHAPCDVLV 141
Query: 160 VK 161
V+
Sbjct: 142 VR 143
>sp|Q8CS61|Y1385_STAES Putative universal stress protein SE_1385 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_1385 PE=3 SV=1
Length = 166
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 101 NVKSEVVIGDAKEKV-CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159
NV + + G K + +L + ADL++ G+ ++R +GSVS HA C V+V
Sbjct: 82 NVDTRLEFGSPKAIIPKKLARDVGADLIMSGTSGLNAVERFIVGSVSEAIVRHAPCDVLV 141
Query: 160 VK 161
V+
Sbjct: 142 VR 143
>sp|Q5HNJ5|Y1273_STAEQ Putative universal stress protein SERP1273 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP1273 PE=3
SV=1
Length = 166
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 101 NVKSEVVIGDAKEKV-CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159
NV + + G K + +L + ADL++ G+ ++R +GSVS HA C V+V
Sbjct: 82 NVDTRLEFGSPKAIIPKKLARDVGADLIMSGTSGLNAVERFIVGSVSEAIVRHAPCDVLV 141
Query: 160 VK 161
V+
Sbjct: 142 VR 143
>sp|Q49YE0|Y1056_STAS1 Putative universal stress protein SSP1056 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1056 PE=3 SV=1
Length = 167
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 101 NVKSEVVIGDAKEKV-CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159
NV++ + G K + +L + ADL++ G+ ++R +GSVS H+ C V+V
Sbjct: 82 NVETRLEFGSPKAIIPKKLATDVDADLIMCGTSGLNAVERFIVGSVSEAIVRHSPCDVLV 141
Query: 160 VK 161
V+
Sbjct: 142 VR 143
>sp|Q9ZDW2|UVRB_RICPR UvrABC system protein B OS=Rickettsia prowazekii (strain Madrid E)
GN=uvrB PE=3 SV=1
Length = 662
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 45 QPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICS 96
QPPPT+ L A+ F SHV VP A + + R + +++H ++ S
Sbjct: 319 QPPPTLFEYLPEDALLFIDESHVSVPQIRAMYNSDRAR-KEVLVEHGFRLPS 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,758,242
Number of Sequences: 539616
Number of extensions: 2812687
Number of successful extensions: 8415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 8325
Number of HSP's gapped (non-prelim): 119
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)