Query 040308
Match_columns 167
No_of_seqs 144 out of 1847
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 11:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mjh_A Protein (ATP-binding do 100.0 6.2E-31 2.1E-35 178.2 17.9 157 1-164 1-161 (162)
2 2dum_A Hypothetical protein PH 100.0 3.5E-31 1.2E-35 180.8 16.6 155 1-165 1-159 (170)
3 3s3t_A Nucleotide-binding prot 100.0 5.4E-31 1.9E-35 175.5 16.9 143 2-161 2-146 (146)
4 3fg9_A Protein of universal st 100.0 7.6E-30 2.6E-34 171.9 16.5 140 2-161 12-156 (156)
5 3hgm_A Universal stress protei 100.0 1.8E-30 6.1E-35 173.1 11.0 144 4-160 1-147 (147)
6 3idf_A USP-like protein; unive 100.0 2.4E-29 8.2E-34 166.1 15.9 136 5-161 1-138 (138)
7 3tnj_A Universal stress protei 100.0 4.7E-30 1.6E-34 171.7 12.6 146 2-164 3-149 (150)
8 1tq8_A Hypothetical protein RV 100.0 2.2E-29 7.4E-34 171.1 13.8 145 2-165 14-161 (163)
9 3dlo_A Universal stress protei 100.0 6.9E-29 2.3E-33 167.3 15.1 131 3-161 22-155 (155)
10 2z08_A Universal stress protei 100.0 5.1E-29 1.8E-33 164.4 13.8 136 4-161 1-137 (137)
11 2gm3_A Unknown protein; AT3G01 100.0 4.6E-28 1.6E-32 166.1 15.8 150 4-164 4-165 (175)
12 3olq_A Universal stress protei 100.0 3.6E-27 1.2E-31 175.4 17.1 148 2-164 4-152 (319)
13 3fdx_A Putative filament prote 100.0 1.2E-27 4.1E-32 158.7 12.9 137 6-161 2-143 (143)
14 3loq_A Universal stress protei 99.9 1.4E-27 4.7E-32 176.0 9.9 145 1-164 18-164 (294)
15 1jmv_A USPA, universal stress 99.9 4E-27 1.4E-31 155.9 11.0 138 4-164 1-140 (141)
16 3mt0_A Uncharacterized protein 99.9 7.5E-26 2.6E-30 166.5 12.8 126 1-163 3-129 (290)
17 3cis_A Uncharacterized protein 99.9 4.5E-25 1.5E-29 163.6 14.6 143 2-164 16-163 (309)
18 3ab8_A Putative uncharacterize 99.9 5.4E-25 1.9E-29 160.0 11.9 147 6-164 1-151 (268)
19 1q77_A Hypothetical protein AQ 99.9 1.1E-24 3.6E-29 143.7 12.2 132 3-161 2-138 (138)
20 3mt0_A Uncharacterized protein 99.9 2.8E-24 9.7E-29 158.0 14.6 138 4-164 133-278 (290)
21 3loq_A Universal stress protei 99.9 2.4E-23 8.3E-28 153.3 14.2 126 3-165 168-293 (294)
22 3olq_A Universal stress protei 99.9 1.8E-23 6.3E-28 155.3 12.9 147 4-166 155-309 (319)
23 3cis_A Uncharacterized protein 99.9 6.2E-23 2.1E-27 152.1 15.5 136 4-163 170-307 (309)
24 3ab8_A Putative uncharacterize 99.9 5.2E-21 1.8E-25 139.0 12.5 116 4-161 153-268 (268)
25 2iel_A Hypothetical protein TT 97.6 0.0047 1.6E-07 39.5 13.3 129 5-160 1-133 (138)
26 3g40_A Na-K-CL cotransporter; 96.2 0.011 3.7E-07 42.9 6.0 102 21-167 181-282 (294)
27 1wy5_A TILS, hypothetical UPF0 95.9 0.16 5.5E-06 37.3 11.2 95 4-133 23-135 (317)
28 4b4k_A N5-carboxyaminoimidazol 95.9 0.093 3.2E-06 35.2 8.8 69 88-164 38-110 (181)
29 3a2k_A TRNA(Ile)-lysidine synt 95.7 0.13 4.3E-06 40.0 10.3 96 4-133 17-129 (464)
30 2xry_A Deoxyribodipyrimidine p 95.7 0.25 8.5E-06 38.5 12.0 116 13-162 46-161 (482)
31 4grd_A N5-CAIR mutase, phospho 95.3 0.12 4.1E-06 34.4 7.7 68 88-163 28-99 (173)
32 3trh_A Phosphoribosylaminoimid 95.1 0.17 5.8E-06 33.6 7.9 69 88-164 22-94 (169)
33 2ywx_A Phosphoribosylaminoimid 95.1 0.16 5.4E-06 33.4 7.7 67 88-162 15-82 (157)
34 3kuu_A Phosphoribosylaminoimid 95.0 0.19 6.6E-06 33.5 8.0 69 88-164 28-100 (174)
35 2wq7_A RE11660P; lyase-DNA com 94.9 0.72 2.5E-05 36.5 12.6 129 7-163 30-162 (543)
36 1np7_A DNA photolyase; protein 94.9 0.85 2.9E-05 35.6 12.9 136 1-163 1-138 (489)
37 1xmp_A PURE, phosphoribosylami 94.8 0.22 7.4E-06 33.1 7.9 69 88-164 27-99 (170)
38 3oow_A Phosphoribosylaminoimid 94.8 0.22 7.6E-06 32.9 7.8 69 88-164 21-93 (166)
39 3umv_A Deoxyribodipyrimidine p 94.7 0.51 1.7E-05 37.1 11.2 119 13-162 47-168 (506)
40 3rg8_A Phosphoribosylaminoimid 94.5 0.24 8.3E-06 32.6 7.4 69 88-164 18-91 (159)
41 3ors_A N5-carboxyaminoimidazol 94.4 0.28 9.6E-06 32.4 7.6 69 88-164 19-91 (163)
42 3lp6_A Phosphoribosylaminoimid 94.3 0.29 9.8E-06 32.7 7.6 68 88-163 23-94 (174)
43 1u11_A PURE (N5-carboxyaminoim 94.3 0.28 9.7E-06 32.9 7.6 69 88-164 37-109 (182)
44 1o4v_A Phosphoribosylaminoimid 94.0 0.33 1.1E-05 32.7 7.3 69 88-164 29-101 (183)
45 3ih5_A Electron transfer flavo 93.8 0.67 2.3E-05 32.1 9.1 87 4-133 2-101 (217)
46 1zun_A Sulfate adenylyltransfe 93.5 0.48 1.7E-05 35.0 8.4 93 5-134 46-157 (325)
47 1o97_C Electron transferring f 92.5 2.1 7.1E-05 30.6 10.4 83 11-135 32-124 (264)
48 3tvs_A Cryptochrome-1; circadi 91.5 1.4 4.7E-05 34.9 9.1 121 13-162 13-136 (538)
49 3g40_A Na-K-CL cotransporter; 91.4 3 0.0001 30.2 12.3 122 6-164 21-148 (294)
50 3kcq_A Phosphoribosylglycinami 91.0 2.4 8.2E-05 29.3 8.9 88 2-133 5-92 (215)
51 1ni5_A Putative cell cycle pro 90.5 2.3 7.9E-05 32.6 9.3 40 5-47 13-53 (433)
52 1iv0_A Hypothetical protein; r 90.1 1.4 4.8E-05 26.4 6.3 55 110-165 38-96 (98)
53 3qjg_A Epidermin biosynthesis 90.0 0.87 3E-05 30.5 5.8 112 4-162 4-118 (175)
54 1efp_B ETF, protein (electron 89.9 1.3 4.3E-05 31.5 6.9 31 14-46 35-65 (252)
55 1efv_B Electron transfer flavo 88.6 1.5 5E-05 31.2 6.5 80 15-135 39-128 (255)
56 3tqr_A Phosphoribosylglycinami 88.6 4.5 0.00015 27.9 8.8 88 1-133 1-93 (215)
57 3fy4_A 6-4 photolyase; DNA rep 88.1 3.3 0.00011 32.8 8.7 135 4-161 3-139 (537)
58 1owl_A Photolyase, deoxyribodi 88.0 5.2 0.00018 31.1 9.8 118 13-162 12-129 (484)
59 3p9x_A Phosphoribosylglycinami 86.9 5.8 0.0002 27.3 9.4 85 5-133 2-91 (211)
60 2j07_A Deoxyribodipyrimidine p 86.3 6.7 0.00023 29.9 9.3 112 13-163 11-122 (420)
61 2h31_A Multifunctional protein 86.2 2.4 8.3E-05 32.5 6.7 69 87-163 280-353 (425)
62 2e0i_A 432AA long hypothetical 86.1 5.9 0.0002 30.5 9.0 118 13-163 10-127 (440)
63 3k32_A Uncharacterized protein 85.9 6.2 0.00021 26.7 9.3 38 3-47 4-41 (203)
64 2r8w_A AGR_C_1641P; APC7498, d 84.9 9.7 0.00033 28.1 10.1 75 86-161 91-167 (332)
65 1sur_A PAPS reductase; assimil 84.5 7.5 0.00026 26.4 9.6 35 6-47 45-79 (215)
66 1dnp_A DNA photolyase; DNA rep 83.4 4.2 0.00014 31.6 7.1 93 13-132 10-104 (471)
67 3da8_A Probable 5'-phosphoribo 83.2 9.2 0.00031 26.4 8.7 85 3-133 10-99 (215)
68 3fni_A Putative diflavin flavo 82.7 3.9 0.00013 26.5 5.9 49 85-135 19-68 (159)
69 3nbm_A PTS system, lactose-spe 82.6 2.1 7.4E-05 26.1 4.3 62 89-162 24-86 (108)
70 3hly_A Flavodoxin-like domain; 82.0 3.9 0.00013 26.6 5.7 48 86-135 16-63 (161)
71 2nz2_A Argininosuccinate synth 81.9 15 0.00052 28.0 11.0 37 4-47 4-40 (413)
72 1k92_A Argininosuccinate synth 81.4 17 0.00057 28.2 11.7 38 3-47 8-45 (455)
73 2j4d_A Cryptochrome 3, cryptoc 79.9 20 0.00069 28.2 11.7 132 6-163 40-175 (525)
74 1nu0_A Hypothetical protein YQ 79.8 2.1 7.1E-05 27.4 3.6 54 110-163 40-97 (138)
75 3m9w_A D-xylose-binding peripl 79.5 14 0.00048 26.2 8.9 72 86-163 19-92 (313)
76 3exr_A RMPD (hexulose-6-phosph 79.1 5.2 0.00018 27.6 5.8 36 1-44 1-36 (221)
77 2l69_A Rossmann 2X3 fold prote 79.0 7.8 0.00027 22.9 6.4 37 86-122 88-124 (134)
78 3s40_A Diacylglycerol kinase; 79.0 7.5 0.00026 28.1 6.8 72 87-165 27-100 (304)
79 2gkg_A Response regulator homo 79.0 7.8 0.00027 22.9 6.8 46 112-160 38-86 (127)
80 2qv7_A Diacylglycerol kinase D 78.9 6.9 0.00024 28.7 6.7 74 86-165 42-117 (337)
81 2hy5_B Intracellular sulfur ox 78.0 2.3 7.8E-05 27.1 3.4 42 1-46 1-46 (136)
82 4ds3_A Phosphoribosylglycinami 77.6 15 0.0005 25.2 9.0 84 6-133 8-96 (209)
83 3o1i_D Periplasmic protein TOR 77.4 15 0.00053 25.7 8.1 70 85-161 21-94 (304)
84 2i2x_B MTAC, methyltransferase 77.1 17 0.00057 25.7 8.4 67 92-161 144-211 (258)
85 3o1l_A Formyltetrahydrofolate 76.9 17 0.0006 26.4 8.2 84 4-133 104-191 (302)
86 3l6u_A ABC-type sugar transpor 76.4 17 0.00058 25.4 9.0 73 85-163 24-98 (293)
87 1u3d_A Cryptochrome 1 apoprote 75.8 27 0.00091 27.3 11.6 118 13-163 21-139 (509)
88 1vhx_A Putative holliday junct 75.6 1.6 5.5E-05 28.4 2.2 55 110-164 42-100 (150)
89 2hma_A Probable tRNA (5-methyl 75.1 24 0.00081 26.5 10.0 36 5-47 9-44 (376)
90 1kor_A Argininosuccinate synth 75.0 25 0.00085 26.7 10.3 36 6-47 1-36 (400)
91 2ywr_A Phosphoribosylglycinami 74.8 18 0.00061 24.8 8.5 42 92-133 44-90 (216)
92 3grc_A Sensor protein, kinase; 74.5 12 0.00041 22.7 6.7 62 93-162 24-88 (140)
93 1ccw_A Protein (glutamate muta 74.1 14 0.00047 23.3 7.5 67 91-160 23-91 (137)
94 1jq5_A Glycerol dehydrogenase; 74.0 12 0.00042 27.8 7.0 70 87-164 46-120 (370)
95 2bon_A Lipid kinase; DAG kinas 73.9 15 0.00052 26.8 7.4 71 89-165 47-121 (332)
96 3rot_A ABC sugar transporter, 73.7 17 0.00058 25.6 7.5 72 86-163 20-95 (297)
97 3h5i_A Response regulator/sens 73.5 13 0.00044 22.7 8.8 66 92-164 22-88 (140)
98 2l2q_A PTS system, cellobiose- 73.5 8.9 0.0003 23.1 5.1 63 89-162 22-84 (109)
99 3f6p_A Transcriptional regulat 73.1 12 0.00041 22.1 8.3 62 93-162 20-81 (120)
100 3na8_A Putative dihydrodipicol 72.7 25 0.00085 25.6 10.2 75 86-161 81-157 (315)
101 1y80_A Predicted cobalamin bin 72.6 12 0.00042 25.3 6.2 67 92-161 109-178 (210)
102 3flu_A DHDPS, dihydrodipicolin 72.6 24 0.00083 25.4 12.0 75 86-161 64-140 (297)
103 3hv2_A Response regulator/HD d 71.7 15 0.00052 22.7 7.9 66 90-163 29-95 (153)
104 3bl5_A Queuosine biosynthesis 71.3 20 0.0007 24.0 11.8 36 5-47 3-38 (219)
105 3l49_A ABC sugar (ribose) tran 71.3 20 0.00068 24.9 7.4 72 86-163 22-95 (291)
106 3eod_A Protein HNR; response r 71.2 14 0.00047 22.1 7.0 65 92-164 24-89 (130)
107 3i42_A Response regulator rece 71.2 14 0.00047 22.0 7.2 66 91-164 19-87 (127)
108 3lou_A Formyltetrahydrofolate 71.0 27 0.00092 25.3 8.9 84 4-133 94-181 (292)
109 2yxb_A Coenzyme B12-dependent 70.9 15 0.0005 23.9 6.1 65 92-160 39-106 (161)
110 3uug_A Multiple sugar-binding 70.9 25 0.00087 25.0 8.1 72 86-163 20-93 (330)
111 3obi_A Formyltetrahydrofolate 70.5 25 0.00084 25.4 7.6 85 4-133 88-176 (288)
112 1v6t_A Hypothetical UPF0271 pr 70.4 26 0.00088 24.8 7.6 112 2-133 25-146 (255)
113 3dff_A Teicoplanin pseudoaglyc 70.2 27 0.00091 24.9 11.7 49 112-160 137-185 (273)
114 1meo_A Phosophoribosylglycinam 70.0 23 0.0008 24.2 8.9 84 6-133 1-89 (209)
115 3m5v_A DHDPS, dihydrodipicolin 70.0 28 0.00097 25.1 8.5 76 86-161 64-141 (301)
116 3g1w_A Sugar ABC transporter; 69.7 26 0.00089 24.6 7.8 73 85-163 20-95 (305)
117 1xrs_A D-lysine 5,6-aminomutas 69.6 21 0.00071 27.6 7.1 45 100-144 151-198 (516)
118 2l69_A Rossmann 2X3 fold prote 69.6 14 0.00049 21.8 5.1 47 86-132 37-84 (134)
119 2p0y_A Hypothetical protein LP 68.4 4.1 0.00014 30.3 3.2 50 110-162 177-228 (341)
120 2o2z_A Hypothetical protein; s 68.4 12 0.00039 27.7 5.5 49 111-162 168-218 (323)
121 3ayv_A Putative uncharacterize 68.2 20 0.00067 24.7 6.7 80 19-123 75-154 (254)
122 3vmk_A 3-isopropylmalate dehyd 67.9 17 0.0006 27.3 6.5 28 15-45 178-205 (375)
123 1g63_A Epidermin modifying enz 67.9 7 0.00024 26.2 4.0 37 4-44 1-37 (181)
124 1qkk_A DCTD, C4-dicarboxylate 67.6 17 0.00059 22.5 5.9 62 93-162 21-83 (155)
125 2q9u_A A-type flavoprotein; fl 67.6 36 0.0012 25.4 8.5 74 85-160 271-347 (414)
126 2dpl_A GMP synthetase, GMP syn 67.5 32 0.0011 24.9 8.6 36 6-47 21-56 (308)
127 3n0v_A Formyltetrahydrofolate 67.3 32 0.0011 24.8 9.2 83 5-133 90-176 (286)
128 2ppv_A Uncharacterized protein 67.3 5.3 0.00018 29.6 3.6 50 110-162 166-217 (332)
129 3u0h_A Xylose isomerase domain 67.2 28 0.00097 24.1 8.0 77 21-125 85-172 (281)
130 3ksm_A ABC-type sugar transpor 66.7 26 0.00089 24.0 7.1 72 86-163 17-93 (276)
131 2nwr_A 2-dehydro-3-deoxyphosph 66.4 33 0.0011 24.5 8.3 64 88-163 64-127 (267)
132 4f2d_A L-arabinose isomerase; 66.3 20 0.00067 28.2 6.8 46 112-163 60-106 (500)
133 2der_A TRNA-specific 2-thiouri 66.3 39 0.0013 25.4 10.9 39 1-46 13-51 (380)
134 2dfa_A Hypothetical UPF0271 pr 65.5 25 0.00086 24.8 6.5 127 2-158 25-161 (250)
135 1h05_A 3-dehydroquinate dehydr 65.4 24 0.00084 22.7 6.3 72 84-162 29-102 (146)
136 2qr3_A Two-component system re 65.3 20 0.00068 21.6 6.6 66 90-162 18-88 (140)
137 2wsi_A FAD synthetase; transfe 65.3 36 0.0012 24.6 9.3 97 6-137 54-171 (306)
138 2q7x_A UPF0052 protein SP_1565 65.1 4.7 0.00016 29.7 3.0 49 111-162 174-224 (326)
139 3udu_A 3-isopropylmalate dehyd 64.9 21 0.00072 26.7 6.4 27 15-44 166-192 (361)
140 3zqu_A Probable aromatic acid 64.8 12 0.0004 25.7 4.7 38 2-43 1-38 (209)
141 2rjn_A Response regulator rece 64.7 22 0.00076 21.9 6.9 62 93-162 25-87 (154)
142 1wpw_A 3-isopropylmalate dehyd 64.1 32 0.0011 25.5 7.2 29 15-46 143-171 (336)
143 3en0_A Cyanophycinase; serine 64.0 13 0.00044 26.9 5.0 106 5-150 25-137 (291)
144 1gqo_A Dehydroquinase; dehydra 63.9 26 0.00089 22.5 6.2 72 84-162 27-100 (143)
145 1w0d_A 3-isopropylmalate dehyd 63.9 19 0.00064 26.7 5.9 29 15-46 153-181 (337)
146 2q5c_A NTRC family transcripti 63.7 30 0.001 23.2 7.6 57 93-163 22-79 (196)
147 3n8k_A 3-dehydroquinate dehydr 63.5 29 0.001 22.9 6.3 72 84-162 55-128 (172)
148 3egc_A Putative ribose operon 63.2 35 0.0012 23.7 9.6 72 84-163 23-96 (291)
149 3u1h_A 3-isopropylmalate dehyd 63.1 25 0.00086 26.6 6.5 28 15-45 185-212 (390)
150 3r8w_A 3-isopropylmalate dehyd 63.0 26 0.0009 26.7 6.7 27 15-44 206-232 (405)
151 1qv9_A F420-dependent methylen 62.8 20 0.00067 25.3 5.4 43 117-163 58-100 (283)
152 3rjz_A N-type ATP pyrophosphat 62.8 36 0.0012 23.8 7.8 92 6-132 5-99 (237)
153 3h75_A Periplasmic sugar-bindi 62.8 37 0.0013 24.4 7.5 71 86-163 21-95 (350)
154 1gtz_A 3-dehydroquinate dehydr 62.6 28 0.00097 22.7 5.9 72 84-162 33-107 (156)
155 3tqi_A GMP synthase [glutamine 62.5 20 0.0007 28.2 6.3 35 6-46 231-265 (527)
156 3d0c_A Dihydrodipicolinate syn 62.2 43 0.0015 24.4 8.7 74 86-161 69-144 (314)
157 2ojp_A DHDPS, dihydrodipicolin 62.2 41 0.0014 24.1 7.6 52 110-161 81-134 (292)
158 3auf_A Glycinamide ribonucleot 62.1 36 0.0012 23.6 9.5 42 92-133 65-111 (229)
159 3jy6_A Transcriptional regulat 62.1 36 0.0012 23.5 9.9 71 84-163 22-94 (276)
160 2amj_A Modulator of drug activ 62.1 21 0.0007 24.1 5.6 48 84-133 32-80 (204)
161 1vl2_A Argininosuccinate synth 62.0 51 0.0017 25.2 10.7 37 4-47 13-49 (421)
162 2j48_A Two-component sensor ki 62.0 20 0.00068 20.5 9.2 65 92-164 18-85 (119)
163 3flk_A Tartrate dehydrogenase/ 61.8 30 0.001 26.0 6.7 30 14-46 164-194 (364)
164 4dad_A Putative pilus assembly 61.7 24 0.00084 21.5 6.4 52 108-163 51-104 (146)
165 2ehh_A DHDPS, dihydrodipicolin 61.5 42 0.0014 24.1 8.5 52 110-161 80-133 (294)
166 1cnz_A IPMDH, IMDH, protein (3 61.0 28 0.00097 26.1 6.5 30 14-46 168-197 (363)
167 1a05_A IPMDH, IMDH, 3-isopropy 61.0 31 0.001 25.8 6.7 29 15-46 164-192 (358)
168 3cg0_A Response regulator rece 60.9 24 0.00083 21.1 8.5 49 112-163 43-91 (140)
169 1w2w_B 5-methylthioribose-1-ph 60.9 14 0.00047 25.0 4.4 61 96-162 27-93 (191)
170 2vc6_A MOSA, dihydrodipicolina 60.8 43 0.0015 24.0 8.2 75 86-161 57-133 (292)
171 2yvk_A Methylthioribose-1-phos 60.8 32 0.0011 25.9 6.8 62 95-162 229-294 (374)
172 2qxy_A Response regulator; reg 60.4 25 0.00087 21.2 7.7 63 92-163 21-84 (142)
173 2v9d_A YAGE; dihydrodipicolini 60.3 49 0.0017 24.4 8.6 52 110-161 111-164 (343)
174 1uf3_A Hypothetical protein TT 60.3 21 0.00072 23.8 5.5 17 114-130 23-39 (228)
175 2yxg_A DHDPS, dihydrodipicolin 60.2 44 0.0015 23.9 8.5 52 110-161 80-133 (289)
176 3qi7_A Putative transcriptiona 59.9 53 0.0018 24.7 9.0 93 7-132 14-120 (371)
177 2b4a_A BH3024; flavodoxin-like 59.8 26 0.00088 21.1 6.5 46 112-161 48-95 (138)
178 1vlc_A 3-isopropylmalate dehyd 59.7 31 0.0011 25.9 6.5 29 15-46 173-201 (366)
179 2rfg_A Dihydrodipicolinate syn 59.7 46 0.0016 23.9 8.0 75 86-161 57-133 (297)
180 2a0u_A Initiation factor 2B; S 59.7 33 0.0011 25.9 6.7 62 95-162 233-298 (383)
181 1t9k_A Probable methylthioribo 59.6 33 0.0011 25.5 6.6 62 95-162 204-269 (347)
182 2oq2_A Phosphoadenosine phosph 59.4 43 0.0015 23.5 8.9 38 5-46 41-78 (261)
183 1x0l_A Homoisocitrate dehydrog 59.4 42 0.0014 24.8 7.1 31 14-46 142-172 (333)
184 3av3_A Phosphoribosylglycinami 59.2 39 0.0013 23.0 9.2 42 92-133 46-92 (212)
185 3cg4_A Response regulator rece 59.0 27 0.00092 21.0 8.4 49 111-163 39-90 (142)
186 3lwz_A 3-dehydroquinate dehydr 58.9 30 0.001 22.5 5.5 72 84-162 34-107 (153)
187 2y3z_A 3-isopropylmalate dehyd 58.8 33 0.0011 25.7 6.5 28 16-46 163-190 (359)
188 3a5f_A Dihydrodipicolinate syn 58.6 42 0.0014 24.0 7.0 75 86-161 58-134 (291)
189 2xw6_A MGS, methylglyoxal synt 58.6 15 0.00053 23.2 4.1 58 98-158 48-109 (134)
190 3snk_A Response regulator CHEY 58.6 27 0.00092 20.9 5.9 45 115-163 51-96 (135)
191 2ohh_A Type A flavoprotein FPR 58.6 53 0.0018 24.3 9.8 47 85-133 271-317 (404)
192 2ioy_A Periplasmic sugar-bindi 58.5 43 0.0015 23.2 7.6 71 86-162 18-90 (283)
193 1b93_A Protein (methylglyoxal 58.4 23 0.00077 23.0 5.0 58 98-158 56-117 (152)
194 2uyg_A 3-dehydroquinate dehydr 58.4 34 0.0012 22.1 6.1 73 84-162 26-100 (149)
195 3si9_A DHDPS, dihydrodipicolin 58.4 51 0.0017 24.0 10.7 75 86-161 79-155 (315)
196 1xw8_A UPF0271 protein YBGL; N 58.2 46 0.0016 23.5 7.6 123 6-158 24-156 (252)
197 2lpm_A Two-component response 58.1 28 0.00096 21.4 5.3 47 112-163 42-88 (123)
198 3l21_A DHDPS, dihydrodipicolin 57.9 50 0.0017 23.8 8.7 52 110-161 95-148 (304)
199 3gt7_A Sensor protein; structu 57.7 31 0.0011 21.3 8.8 65 91-163 23-90 (154)
200 1tjy_A Sugar transport protein 57.4 30 0.001 24.6 6.2 70 87-162 21-93 (316)
201 3gbv_A Putative LACI-family tr 57.4 44 0.0015 23.2 7.0 73 85-163 25-103 (304)
202 2yvq_A Carbamoyl-phosphate syn 57.0 13 0.00046 23.6 3.7 63 94-158 62-129 (143)
203 1ydg_A Trp repressor binding p 57.0 14 0.00047 24.8 4.1 17 115-133 72-88 (211)
204 3lua_A Response regulator rece 56.9 26 0.00089 21.1 5.1 49 112-163 38-90 (140)
205 2fvy_A D-galactose-binding per 56.8 47 0.0016 23.2 7.5 72 86-163 19-93 (309)
206 8abp_A L-arabinose-binding pro 56.5 33 0.0011 24.0 6.2 70 86-162 19-90 (306)
207 2q62_A ARSH; alpha/beta, flavo 56.4 22 0.00077 24.9 5.1 46 87-134 53-109 (247)
208 1xky_A Dihydrodipicolinate syn 56.4 53 0.0018 23.7 8.7 52 110-161 92-145 (301)
209 1o5k_A DHDPS, dihydrodipicolin 56.3 54 0.0018 23.7 8.7 75 86-161 69-145 (306)
210 1f6k_A N-acetylneuraminate lya 56.3 52 0.0018 23.5 10.9 52 110-161 84-137 (293)
211 2rff_A Putative nucleotidyltra 56.0 16 0.00053 22.2 3.8 42 89-133 21-62 (111)
212 2fn9_A Ribose ABC transporter, 56.0 47 0.0016 22.9 8.7 71 86-162 19-91 (290)
213 2wkj_A N-acetylneuraminate lya 55.9 55 0.0019 23.6 8.0 52 110-161 91-145 (303)
214 3to5_A CHEY homolog; alpha(5)b 55.8 34 0.0012 21.3 7.4 66 92-164 29-97 (134)
215 2h3h_A Sugar ABC transporter, 55.6 49 0.0017 23.3 7.0 70 87-162 18-90 (313)
216 3ezx_A MMCP 1, monomethylamine 55.5 22 0.00075 24.3 4.9 67 91-160 112-183 (215)
217 3dx5_A Uncharacterized protein 55.2 50 0.0017 23.0 7.9 82 17-125 81-165 (286)
218 2vk2_A YTFQ, ABC transporter p 55.1 51 0.0018 23.1 8.4 70 87-162 20-91 (306)
219 1p3y_1 MRSD protein; flavoprot 54.9 18 0.00062 24.4 4.3 34 5-42 8-41 (194)
220 2ywb_A GMP synthase [glutamine 54.8 74 0.0025 24.8 10.5 34 6-46 210-243 (503)
221 3cpr_A Dihydrodipicolinate syn 54.5 58 0.002 23.5 8.5 52 110-161 96-149 (304)
222 1t5o_A EIF2BD, translation ini 54.4 41 0.0014 25.0 6.4 62 95-162 202-266 (351)
223 3uhj_A Probable glycerol dehyd 54.1 37 0.0013 25.5 6.3 70 87-164 67-140 (387)
224 1uqr_A 3-dehydroquinate dehydr 54.1 23 0.00079 23.0 4.4 72 84-162 28-101 (154)
225 3qze_A DHDPS, dihydrodipicolin 54.1 60 0.0021 23.6 8.5 75 86-161 80-156 (314)
226 2f6u_A GGGPS, (S)-3-O-geranylg 53.6 22 0.00074 24.9 4.6 55 106-163 12-70 (234)
227 3hs3_A Ribose operon repressor 53.5 49 0.0017 22.8 6.6 67 84-163 25-94 (277)
228 3tak_A DHDPS, dihydrodipicolin 53.5 59 0.002 23.3 8.5 75 86-161 58-134 (291)
229 3iwt_A 178AA long hypothetical 53.3 38 0.0013 22.1 5.7 41 90-130 44-88 (178)
230 3rpe_A MDAB, modulator of drug 53.2 46 0.0016 22.8 6.2 46 86-133 47-93 (218)
231 4f3r_A Phosphopantetheine aden 52.9 44 0.0015 21.7 8.9 26 114-139 75-100 (162)
232 1vbk_A Hypothetical protein PH 52.8 63 0.0021 23.4 10.5 34 4-45 178-211 (307)
233 2zay_A Response regulator rece 52.5 37 0.0013 20.6 8.1 48 112-163 41-91 (147)
234 2ejb_A Probable aromatic acid 52.3 25 0.00087 23.6 4.6 33 6-42 2-34 (189)
235 3vk5_A MOEO5; TIM barrel, tran 52.2 21 0.00071 25.8 4.3 46 115-161 58-104 (286)
236 1vmd_A MGS, methylglyoxal synt 52.2 32 0.0011 23.0 5.0 58 98-158 72-133 (178)
237 1y5e_A Molybdenum cofactor bio 51.8 43 0.0015 21.8 5.7 40 91-130 36-79 (169)
238 3w01_A Heptaprenylglyceryl pho 51.7 30 0.001 24.2 5.0 56 106-164 15-74 (235)
239 1ta9_A Glycerol dehydrogenase; 51.5 80 0.0027 24.3 7.9 70 86-164 105-179 (450)
240 2zki_A 199AA long hypothetical 51.5 20 0.00069 23.6 4.1 43 1-47 1-43 (199)
241 3dbi_A Sugar-binding transcrip 51.5 63 0.0022 23.0 9.3 72 85-163 79-152 (338)
242 3e61_A Putative transcriptiona 51.4 56 0.0019 22.4 8.2 71 84-163 23-95 (277)
243 2pju_A Propionate catabolism o 51.2 58 0.002 22.5 8.9 65 87-163 24-91 (225)
244 3qk7_A Transcriptional regulat 51.0 60 0.002 22.6 9.9 72 84-163 25-97 (294)
245 1qzu_A Hypothetical protein MD 51.0 22 0.00076 24.2 4.2 37 4-43 18-54 (206)
246 3eb2_A Putative dihydrodipicol 50.8 67 0.0023 23.1 10.2 64 100-163 74-139 (300)
247 2is8_A Molybdopterin biosynthe 50.7 43 0.0015 21.6 5.5 40 91-130 26-69 (164)
248 3k4h_A Putative transcriptiona 50.7 59 0.002 22.4 7.9 72 84-163 28-101 (292)
249 3o74_A Fructose transport syst 50.6 56 0.0019 22.2 9.4 73 84-163 17-91 (272)
250 3brs_A Periplasmic binding pro 50.2 44 0.0015 23.0 6.0 71 86-162 24-98 (289)
251 3blx_A Isocitrate dehydrogenas 50.1 76 0.0026 23.6 7.3 31 14-46 155-185 (349)
252 3rqi_A Response regulator prot 50.1 48 0.0016 21.3 6.4 63 93-163 25-88 (184)
253 2o8v_A Phosphoadenosine phosph 50.0 62 0.0021 22.5 9.3 34 6-46 46-79 (252)
254 2x5e_A UPF0271 protein PA4511; 50.0 36 0.0012 24.1 5.2 110 3-132 32-151 (252)
255 3huu_A Transcription regulator 49.7 59 0.002 22.7 6.6 72 84-163 42-115 (305)
256 3q0i_A Methionyl-tRNA formyltr 49.7 67 0.0023 23.4 6.9 41 90-133 54-95 (318)
257 3pm6_A Putative fructose-bisph 49.5 22 0.00075 26.0 4.2 52 109-160 37-88 (306)
258 1gvf_A Tagatose-bisphosphate a 49.4 27 0.00094 25.2 4.7 54 107-160 26-80 (286)
259 3gv0_A Transcriptional regulat 49.4 63 0.0021 22.4 8.7 72 84-163 25-98 (288)
260 1i60_A IOLI protein; beta barr 49.3 61 0.0021 22.2 9.0 80 18-124 82-166 (278)
261 3hzh_A Chemotaxis response reg 49.1 45 0.0015 20.6 8.7 65 92-163 53-120 (157)
262 1o2d_A Alcohol dehydrogenase, 48.8 51 0.0018 24.5 6.3 44 88-131 58-107 (371)
263 1srr_A SPO0F, sporulation resp 48.7 38 0.0013 19.7 8.1 48 112-163 36-84 (124)
264 2dri_A D-ribose-binding protei 48.7 62 0.0021 22.2 7.0 71 86-162 18-90 (271)
265 2pg3_A Queuosine biosynthesis 48.5 61 0.0021 22.0 11.6 36 5-47 2-37 (232)
266 3iz5_H 60S ribosomal protein L 48.3 20 0.00068 25.4 3.6 73 85-163 105-179 (258)
267 1xhf_A DYE resistance, aerobic 48.3 39 0.0013 19.7 8.6 48 112-163 36-83 (123)
268 3kto_A Response regulator rece 48.3 27 0.00093 21.0 4.1 66 91-163 22-89 (136)
269 1wot_A Putative minimal nucleo 48.2 5.2 0.00018 23.7 0.6 69 87-162 12-80 (98)
270 2q8u_A Exonuclease, putative; 48.2 21 0.00071 25.9 4.0 12 37-48 17-28 (336)
271 2a5l_A Trp repressor binding p 47.9 34 0.0012 22.4 4.8 12 123-134 71-82 (200)
272 3ngf_A AP endonuclease, family 47.9 66 0.0022 22.2 7.7 80 18-125 91-178 (269)
273 2a9o_A Response regulator; ess 47.6 39 0.0013 19.5 9.0 48 112-163 34-81 (120)
274 3hdg_A Uncharacterized protein 47.3 43 0.0015 19.9 8.8 48 112-163 40-88 (137)
275 2c4w_A 3-dehydroquinate dehydr 47.2 60 0.0021 21.6 6.6 73 84-162 36-112 (176)
276 3ecs_A Translation initiation 47.1 81 0.0028 23.1 10.0 61 94-162 167-231 (315)
277 3tqk_A Phospho-2-dehydro-3-deo 47.0 86 0.0029 23.3 7.0 57 95-163 130-186 (346)
278 3cnb_A DNA-binding response re 47.0 44 0.0015 20.0 9.0 48 112-163 43-93 (143)
279 3vzx_A Heptaprenylglyceryl pho 46.9 35 0.0012 23.7 4.7 47 114-163 22-68 (228)
280 4a17_F RPL7A, 60S ribosomal pr 46.8 45 0.0015 23.6 5.2 73 85-163 102-176 (255)
281 2iks_A DNA-binding transcripti 46.8 70 0.0024 22.2 7.7 70 86-162 37-108 (293)
282 1mb3_A Cell division response 46.8 41 0.0014 19.5 7.6 48 112-163 34-84 (124)
283 1rtt_A Conserved hypothetical 46.7 19 0.00065 23.7 3.4 19 113-133 64-82 (193)
284 1zgz_A Torcad operon transcrip 46.6 41 0.0014 19.5 9.0 48 112-163 35-82 (122)
285 2rgy_A Transcriptional regulat 46.6 70 0.0024 22.2 8.4 69 86-162 25-98 (290)
286 3qxc_A Dethiobiotin synthetase 46.5 42 0.0014 23.4 5.2 51 112-163 118-170 (242)
287 3tva_A Xylose isomerase domain 46.4 72 0.0024 22.2 7.2 79 17-125 99-177 (290)
288 3b4u_A Dihydrodipicolinate syn 46.4 78 0.0027 22.7 7.3 62 100-161 73-140 (294)
289 3t6k_A Response regulator rece 46.3 46 0.0016 20.0 8.2 63 93-163 22-87 (136)
290 4e0q_A COP9 signalosome comple 46.1 47 0.0016 21.1 5.0 52 110-161 70-121 (141)
291 2rjo_A Twin-arginine transloca 45.9 47 0.0016 23.6 5.7 72 86-163 22-97 (332)
292 2jba_A Phosphate regulon trans 45.9 43 0.0015 19.5 5.1 47 112-162 35-84 (127)
293 1ycg_A Nitric oxide reductase; 45.7 87 0.003 23.0 8.3 49 84-134 265-313 (398)
294 3kbq_A Protein TA0487; structu 45.5 55 0.0019 21.6 5.4 42 89-130 26-69 (172)
295 3inp_A D-ribulose-phosphate 3- 45.2 29 0.001 24.4 4.2 59 89-149 124-182 (246)
296 3hdv_A Response regulator; PSI 45.2 47 0.0016 19.7 7.8 65 92-163 24-90 (136)
297 2fzv_A Putative arsenical resi 45.1 36 0.0012 24.4 4.7 46 86-133 76-133 (279)
298 2xdq_A Light-independent proto 45.0 16 0.00055 28.0 3.1 45 109-153 113-158 (460)
299 3f6c_A Positive transcription 44.8 47 0.0016 19.6 8.2 67 91-164 17-84 (134)
300 3n0r_A Response regulator; sig 44.6 81 0.0028 22.3 8.8 68 90-163 175-242 (286)
301 3mcu_A Dipicolinate synthase, 44.6 25 0.00085 24.1 3.6 39 1-43 1-40 (207)
302 2oqr_A Sensory transduction pr 44.5 67 0.0023 21.3 8.7 47 112-162 37-83 (230)
303 1gud_A ALBP, D-allose-binding 44.4 60 0.0021 22.5 5.9 71 86-162 18-92 (288)
304 3kws_A Putative sugar isomeras 44.4 77 0.0026 22.0 7.2 84 18-125 102-191 (287)
305 2vzf_A NADH-dependent FMN redu 44.4 59 0.002 21.4 5.6 19 114-134 62-80 (197)
306 3q94_A Fructose-bisphosphate a 44.2 32 0.0011 24.9 4.3 53 108-160 30-86 (288)
307 2qjg_A Putative aldolase MJ040 44.2 79 0.0027 22.1 7.9 69 86-162 132-210 (273)
308 3bul_A Methionine synthase; tr 44.2 54 0.0019 26.2 6.0 68 91-161 118-186 (579)
309 1k77_A EC1530, hypothetical pr 44.2 73 0.0025 21.7 6.9 82 17-125 82-171 (260)
310 2rdm_A Response regulator rece 44.1 47 0.0016 19.5 9.2 65 93-164 23-89 (132)
311 3rfq_A Pterin-4-alpha-carbinol 44.1 65 0.0022 21.5 5.6 42 89-130 52-96 (185)
312 3ctl_A D-allulose-6-phosphate 43.8 38 0.0013 23.4 4.6 58 88-147 95-152 (231)
313 3u80_A 3-dehydroquinate dehydr 43.7 64 0.0022 20.9 6.9 74 83-162 30-107 (151)
314 3bbl_A Regulatory protein of L 43.6 78 0.0027 21.9 7.4 69 86-162 25-95 (287)
315 3m6m_D Sensory/regulatory prot 43.5 53 0.0018 19.9 8.4 64 92-163 31-99 (143)
316 5nul_A Flavodoxin; electron tr 43.5 54 0.0019 20.0 5.7 44 85-134 13-56 (138)
317 2qzj_A Two-component response 43.4 52 0.0018 19.7 8.7 63 93-163 22-84 (136)
318 2fz5_A Flavodoxin; alpha/beta 43.4 53 0.0018 19.8 7.5 43 86-134 15-57 (137)
319 2x7x_A Sensor protein; transfe 43.4 66 0.0023 22.8 6.1 71 86-162 22-95 (325)
320 3kjx_A Transcriptional regulat 43.3 88 0.003 22.4 8.5 68 85-160 84-153 (344)
321 3c3m_A Response regulator rece 43.3 52 0.0018 19.7 7.4 48 112-163 36-86 (138)
322 3kip_A 3-dehydroquinase, type 43.3 68 0.0023 21.1 6.5 73 84-162 41-117 (167)
323 3tb6_A Arabinose metabolism tr 43.0 79 0.0027 21.8 9.8 76 85-163 31-108 (298)
324 3miz_A Putative transcriptiona 43.0 43 0.0015 23.4 5.0 66 87-161 32-99 (301)
325 1sqs_A Conserved hypothetical 42.7 42 0.0015 23.0 4.8 21 112-134 70-90 (242)
326 3h1g_A Chemotaxis protein CHEY 42.7 51 0.0017 19.5 6.6 65 93-163 23-90 (129)
327 3daq_A DHDPS, dihydrodipicolin 42.5 91 0.0031 22.3 8.1 74 87-161 60-135 (292)
328 1e5d_A Rubredoxin\:oxygen oxid 42.5 99 0.0034 22.7 11.5 45 88-134 270-314 (402)
329 1jkx_A GART;, phosphoribosylgl 42.3 79 0.0027 21.5 9.4 42 92-133 43-89 (212)
330 1v95_A Nuclear receptor coacti 42.3 62 0.0021 20.3 5.9 45 88-132 24-70 (130)
331 3e96_A Dihydrodipicolinate syn 41.9 97 0.0033 22.4 8.3 74 86-161 69-144 (316)
332 1mkz_A Molybdenum cofactor bio 41.9 71 0.0024 20.8 6.0 40 91-130 33-76 (172)
333 1of8_A Phospho-2-dehydro-3-deo 41.8 87 0.003 23.5 6.4 63 86-163 139-204 (370)
334 3lte_A Response regulator; str 41.7 53 0.0018 19.3 8.6 23 112-134 39-61 (132)
335 3blx_B Isocitrate dehydrogenas 41.7 98 0.0034 23.1 6.7 31 14-46 161-191 (354)
336 3l4e_A Uncharacterized peptida 41.6 16 0.00055 24.8 2.4 43 88-132 46-88 (206)
337 3kht_A Response regulator; PSI 41.6 56 0.0019 19.6 8.1 67 91-163 21-90 (144)
338 3ce9_A Glycerol dehydrogenase; 41.4 68 0.0023 23.5 5.9 69 87-164 49-122 (354)
339 3a11_A Translation initiation 41.4 54 0.0018 24.2 5.3 60 95-162 188-251 (338)
340 3onr_A Protein transport prote 41.4 14 0.00047 20.7 1.6 44 1-47 1-44 (72)
341 2r91_A 2-keto-3-deoxy-(6-phosp 41.3 94 0.0032 22.1 7.4 52 110-161 75-129 (286)
342 1viz_A PCRB protein homolog; s 41.3 39 0.0013 23.6 4.3 54 106-162 12-69 (240)
343 3n53_A Response regulator rece 41.1 56 0.0019 19.5 8.3 48 112-163 35-85 (140)
344 3b6i_A Flavoprotein WRBA; flav 41.0 44 0.0015 21.8 4.5 12 122-133 67-78 (198)
345 3jvd_A Transcriptional regulat 40.9 86 0.0029 22.4 6.4 64 85-162 80-144 (333)
346 1w3i_A EDA, 2-keto-3-deoxy glu 40.9 84 0.0029 22.5 6.2 52 110-161 76-130 (293)
347 3jte_A Response regulator rece 40.8 58 0.002 19.5 8.2 63 93-163 21-86 (143)
348 3q9s_A DNA-binding response re 40.8 84 0.0029 21.4 8.2 48 112-163 70-117 (249)
349 3hcw_A Maltose operon transcri 40.7 89 0.0031 21.7 8.0 72 84-163 27-100 (295)
350 3d8u_A PURR transcriptional re 40.7 84 0.0029 21.4 6.7 69 86-162 20-90 (275)
351 2gwr_A DNA-binding response re 40.6 81 0.0028 21.1 8.9 47 113-163 39-85 (238)
352 3cqj_A L-ribulose-5-phosphate 40.5 91 0.0031 21.7 8.1 81 18-125 106-189 (295)
353 3nrb_A Formyltetrahydrofolate 40.5 1E+02 0.0034 22.2 9.2 85 4-133 87-175 (287)
354 3of5_A Dethiobiotin synthetase 40.3 43 0.0015 23.0 4.4 21 4-24 3-23 (228)
355 1tmy_A CHEY protein, TMY; chem 40.2 53 0.0018 18.9 8.7 48 112-163 36-84 (120)
356 3gl9_A Response regulator; bet 40.1 55 0.0019 19.1 8.6 63 93-163 20-85 (122)
357 2nuw_A 2-keto-3-deoxygluconate 40.0 80 0.0027 22.5 6.0 52 110-161 76-130 (288)
358 3a10_A Response regulator; pho 40.0 52 0.0018 18.8 8.4 47 112-162 34-81 (116)
359 2g2c_A Putative molybdenum cof 39.9 61 0.0021 21.0 4.9 36 95-130 38-76 (167)
360 3elf_A Fructose-bisphosphate a 39.9 47 0.0016 24.7 4.7 70 94-163 15-96 (349)
361 3r7f_A Aspartate carbamoyltran 39.8 40 0.0014 24.5 4.3 41 109-158 78-118 (304)
362 3u7r_A NADPH-dependent FMN red 39.8 53 0.0018 21.9 4.7 39 4-46 1-42 (190)
363 3c3d_A 2-phospho-L-lactate tra 39.6 29 0.00098 25.4 3.5 58 100-162 158-221 (311)
364 2ark_A Flavodoxin; FMN, struct 39.6 77 0.0026 20.6 5.9 43 86-134 20-63 (188)
365 1s8n_A Putative antiterminator 39.6 77 0.0026 20.6 9.0 46 112-161 47-92 (205)
366 3j21_Z 50S ribosomal protein L 39.5 54 0.0018 19.2 4.2 43 113-160 21-63 (99)
367 3lqk_A Dipicolinate synthase s 39.5 38 0.0013 23.0 3.9 39 1-43 3-42 (201)
368 2c5s_A THII, probable thiamine 39.5 1.2E+02 0.0042 22.9 12.9 36 4-46 186-221 (413)
369 1vp8_A Hypothetical protein AF 39.3 88 0.003 21.2 5.9 75 84-160 28-104 (201)
370 2kyr_A Fructose-like phosphotr 39.2 36 0.0012 20.8 3.4 44 90-133 27-70 (111)
371 4fe7_A Xylose operon regulator 39.2 1E+02 0.0034 22.9 6.7 66 85-162 40-105 (412)
372 2d1c_A Isocitrate dehydrogenas 39.1 1.3E+02 0.0044 23.6 7.2 29 16-46 165-193 (496)
373 3kke_A LACI family transcripti 39.1 97 0.0033 21.6 9.5 70 85-163 31-103 (303)
374 2r48_A Phosphotransferase syst 39.0 31 0.0011 20.9 3.1 40 92-133 26-67 (106)
375 3d6n_B Aspartate carbamoyltran 38.6 67 0.0023 23.2 5.3 41 109-158 76-117 (291)
376 3e3m_A Transcriptional regulat 38.4 1.1E+02 0.0037 22.0 9.2 69 85-161 86-156 (355)
377 3c3k_A Alanine racemase; struc 38.2 96 0.0033 21.3 7.6 68 86-162 25-94 (285)
378 2qsj_A DNA-binding response re 38.2 67 0.0023 19.5 6.2 48 112-163 38-87 (154)
379 1tqx_A D-ribulose-5-phosphate 38.1 97 0.0033 21.3 6.5 56 94-149 109-164 (227)
380 3t8y_A CHEB, chemotaxis respon 38.1 72 0.0025 19.9 8.9 48 111-162 59-106 (164)
381 3dfi_A Pseudoaglycone deacetyl 38.0 1E+02 0.0036 21.7 13.5 50 111-160 133-182 (270)
382 3inp_A D-ribulose-phosphate 3- 38.0 39 0.0013 23.7 3.9 44 88-132 182-225 (246)
383 2uxq_A Isocitrate dehydrogenas 37.9 1E+02 0.0035 23.4 6.4 29 15-46 183-211 (402)
384 3dm5_A SRP54, signal recogniti 37.7 1.4E+02 0.0047 23.0 9.3 49 90-138 146-197 (443)
385 2pln_A HP1043, response regula 37.6 64 0.0022 19.1 7.8 44 112-163 51-95 (137)
386 3h5o_A Transcriptional regulat 37.5 1.1E+02 0.0037 21.8 8.4 68 86-161 79-148 (339)
387 1t5b_A Acyl carrier protein ph 37.4 79 0.0027 20.5 5.4 19 114-134 79-97 (201)
388 2m1z_A LMO0427 protein; homolo 37.4 24 0.00083 21.3 2.4 43 90-134 24-68 (106)
389 1wdn_A GLNBP, glutamine bindin 37.2 77 0.0026 20.5 5.3 34 95-131 36-69 (226)
390 3cu2_A Ribulose-5-phosphate 3- 37.0 86 0.0029 21.8 5.6 44 88-132 174-219 (237)
391 1sbz_A Probable aromatic acid 36.6 61 0.0021 21.9 4.6 34 7-43 2-35 (197)
392 3sho_A Transcriptional regulat 36.5 85 0.0029 20.2 6.0 39 5-47 87-125 (187)
393 3d02_A Putative LACI-type tran 36.3 67 0.0023 22.3 5.1 71 87-163 22-95 (303)
394 2qfy_A Isocitrate dehydrogenas 36.2 1.1E+02 0.0038 23.4 6.4 29 15-46 202-230 (427)
395 3pzy_A MOG; ssgcid, seattle st 36.0 52 0.0018 21.4 4.1 39 91-130 32-73 (164)
396 3mm4_A Histidine kinase homolo 35.9 92 0.0032 20.4 8.3 38 123-164 119-161 (206)
397 3qc0_A Sugar isomerase; TIM ba 35.8 1E+02 0.0035 21.0 8.1 81 18-124 81-170 (275)
398 3eul_A Possible nitrate/nitrit 35.7 75 0.0025 19.3 8.8 50 110-163 48-98 (152)
399 2d1p_B TUSC, hypothetical UPF0 35.6 17 0.00059 22.1 1.6 38 5-46 1-42 (119)
400 2r4q_A Phosphotransferase syst 35.5 31 0.001 20.9 2.7 39 93-133 27-67 (106)
401 3ctl_A D-allulose-6-phosphate 35.5 73 0.0025 22.0 5.0 43 89-132 155-198 (231)
402 2qu7_A Putative transcriptiona 35.4 1.1E+02 0.0037 21.1 7.2 68 85-162 23-92 (288)
403 2a5l_A Trp repressor binding p 35.3 48 0.0017 21.6 4.0 38 6-46 6-44 (200)
404 3nhm_A Response regulator; pro 35.2 69 0.0024 18.8 7.6 49 111-163 35-86 (133)
405 4f3p_A Glutamine-binding perip 35.1 99 0.0034 20.6 5.7 36 93-131 55-90 (249)
406 3k9c_A Transcriptional regulat 35.0 1.1E+02 0.0038 21.1 8.9 71 84-163 26-97 (289)
407 3av0_A DNA double-strand break 35.0 34 0.0012 25.4 3.5 12 37-48 19-30 (386)
408 1lwd_A Isocitrate dehydrogenas 34.9 1.4E+02 0.0047 22.8 6.7 28 16-46 187-214 (413)
409 1h5y_A HISF; histidine biosynt 34.8 97 0.0033 20.9 5.6 49 113-161 157-205 (253)
410 3ovp_A Ribulose-phosphate 3-ep 34.8 77 0.0026 21.8 5.0 55 90-146 103-157 (228)
411 1ii7_A MRE11 nuclease; RAD50, 34.6 72 0.0025 23.0 5.1 9 126-134 79-87 (333)
412 3ty4_A Probable homoisocitrate 34.5 1.2E+02 0.0042 22.7 6.3 28 15-44 161-200 (366)
413 3tdn_A FLR symmetric alpha-bet 34.5 1.1E+02 0.0038 20.9 5.9 49 112-160 37-85 (247)
414 1dbq_A Purine repressor; trans 34.4 1.1E+02 0.0038 20.9 9.6 70 86-162 24-95 (289)
415 2h0a_A TTHA0807, transcription 34.4 66 0.0023 21.9 4.8 70 85-162 15-86 (276)
416 3b2n_A Uncharacterized protein 34.1 74 0.0025 18.8 7.5 48 112-163 38-86 (133)
417 2pl1_A Transcriptional regulat 34.0 68 0.0023 18.4 9.2 48 112-163 33-81 (121)
418 3f6r_A Flavodoxin; FMN binding 33.9 45 0.0015 20.7 3.5 44 86-134 17-60 (148)
419 3u7q_B Nitrogenase molybdenum- 33.6 1.6E+02 0.0055 23.1 7.1 29 105-133 420-448 (523)
420 3n7t_A Macrophage binding prot 33.4 58 0.002 22.7 4.3 41 1-44 5-56 (247)
421 4e7p_A Response regulator; DNA 33.4 82 0.0028 19.1 8.2 50 110-163 53-103 (150)
422 1yio_A Response regulatory pro 33.4 98 0.0034 20.0 7.8 64 93-164 22-86 (208)
423 2w6r_A Imidazole glycerol phos 33.3 1.2E+02 0.0041 20.9 6.0 49 112-160 32-80 (266)
424 2yvt_A Hypothetical protein AQ 33.3 79 0.0027 21.5 5.0 21 112-132 21-41 (260)
425 3cz5_A Two-component response 33.2 83 0.0028 19.1 7.4 48 112-163 40-88 (153)
426 3klo_A Transcriptional regulat 32.8 51 0.0017 22.0 3.8 51 109-163 40-92 (225)
427 1uuy_A CNX1, molybdopterin bio 32.7 1E+02 0.0034 19.9 5.6 35 96-130 39-78 (167)
428 3brq_A HTH-type transcriptiona 32.5 1.2E+02 0.0041 20.8 8.4 69 86-162 38-109 (296)
429 3us8_A Isocitrate dehydrogenas 32.3 1.6E+02 0.0055 22.6 6.7 27 15-44 207-233 (427)
430 2xdq_B Light-independent proto 32.3 35 0.0012 26.7 3.2 21 112-132 77-97 (511)
431 3o3m_A Alpha subunit 2-hydroxy 32.2 46 0.0016 25.2 3.8 55 110-164 321-375 (408)
432 3gyb_A Transcriptional regulat 32.0 1.2E+02 0.0041 20.6 6.0 68 85-164 21-89 (280)
433 3ih5_A Electron transfer flavo 32.0 1.2E+02 0.0041 20.6 6.6 79 84-163 21-100 (217)
434 3kyj_B CHEY6 protein, putative 32.0 85 0.0029 18.8 6.8 50 108-162 45-95 (145)
435 1jlj_A Gephyrin; globular alph 31.9 1.1E+02 0.0039 20.3 5.9 33 98-130 49-85 (189)
436 3nkl_A UDP-D-quinovosamine 4-d 31.9 66 0.0022 19.6 4.0 47 112-162 54-100 (141)
437 1a2o_A CHEB methylesterase; ba 31.8 1.5E+02 0.0052 21.7 8.7 47 112-162 38-84 (349)
438 3tho_B Exonuclease, putative; 31.7 81 0.0028 23.4 5.0 24 87-112 31-54 (379)
439 1zh2_A KDP operon transcriptio 31.6 75 0.0026 18.1 8.4 63 93-163 19-81 (121)
440 3izc_H 60S ribosomal protein R 31.5 1.4E+02 0.0047 21.2 6.0 73 84-162 106-182 (256)
441 1jbe_A Chemotaxis protein CHEY 31.4 79 0.0027 18.3 7.1 48 112-163 38-88 (128)
442 4dz1_A DALS D-alanine transpor 30.9 1.1E+02 0.0037 20.6 5.4 34 94-130 62-95 (259)
443 3l23_A Sugar phosphate isomera 30.9 1.4E+02 0.0048 21.1 6.2 59 17-105 105-165 (303)
444 1mvo_A PHOP response regulator 30.9 84 0.0029 18.5 9.8 48 112-163 36-84 (136)
445 3kl4_A SRP54, signal recogniti 30.9 78 0.0027 24.3 4.8 46 91-136 144-192 (433)
446 3fgn_A Dethiobiotin synthetase 30.6 98 0.0033 21.6 5.0 50 113-163 114-166 (251)
447 2pbq_A Molybdenum cofactor bio 30.4 1.2E+02 0.0039 19.9 5.6 33 97-130 39-75 (178)
448 3n9r_A Fructose-bisphosphate a 30.4 66 0.0023 23.5 4.2 52 109-160 27-80 (307)
449 3crn_A Response regulator rece 30.3 87 0.003 18.4 7.9 48 112-163 36-84 (132)
450 1ylq_A Putative nucleotidyltra 30.1 8.4 0.00029 22.6 -0.5 40 89-132 5-46 (96)
451 2xxa_A Signal recognition part 29.9 1.8E+02 0.0063 22.1 9.2 29 13-44 109-137 (433)
452 2isw_A Putative fructose-1,6-b 29.9 90 0.0031 23.0 4.8 68 94-161 12-82 (323)
453 3o3m_B Beta subunit 2-hydroxya 29.8 79 0.0027 23.6 4.7 54 110-164 300-353 (385)
454 1kgs_A DRRD, DNA binding respo 29.8 1.2E+02 0.0041 19.9 8.8 48 112-163 35-83 (225)
455 1fui_A L-fucose isomerase; ket 29.7 2.2E+02 0.0075 22.9 8.0 83 71-162 21-110 (591)
456 3cfy_A Putative LUXO repressor 29.7 92 0.0032 18.5 8.3 64 92-163 21-85 (137)
457 1byk_A Protein (trehalose oper 29.6 1.3E+02 0.0044 20.2 7.6 47 86-132 19-67 (255)
458 2au3_A DNA primase; zinc ribbo 29.5 1.6E+02 0.0055 22.1 6.4 34 6-42 288-321 (407)
459 3r6w_A FMN-dependent NADH-azor 29.5 1.2E+02 0.0043 20.0 5.6 35 114-150 80-114 (212)
460 3grf_A Ornithine carbamoyltran 29.4 1.6E+02 0.0054 21.6 6.1 42 107-158 85-126 (328)
461 3u7q_A Nitrogenase molybdenum- 29.3 42 0.0014 26.2 3.2 28 109-136 160-188 (492)
462 3gxq_A Putative regulator of t 29.3 58 0.002 16.1 3.2 26 101-126 11-37 (54)
463 1qpz_A PURA, protein (purine n 29.2 1.5E+02 0.0053 21.0 9.1 70 86-162 75-146 (340)
464 3m47_A Orotidine 5'-phosphate 29.2 1.4E+02 0.0048 20.4 7.4 35 4-46 11-45 (228)
465 4ebj_A Aminoglycoside nucleoti 29.2 16 0.00054 26.0 0.7 48 80-133 22-69 (272)
466 3tpf_A Otcase, ornithine carba 29.1 92 0.0031 22.7 4.8 40 109-158 78-117 (307)
467 1q6o_A Humps, 3-keto-L-gulonat 29.0 1.3E+02 0.0045 20.1 6.0 13 6-18 4-16 (216)
468 1sbp_A Sulfate-binding protein 28.9 1.5E+02 0.005 20.6 6.5 48 84-131 17-65 (310)
469 3o6p_A Peptide ABC transporter 28.7 1.3E+02 0.0045 20.0 6.9 47 84-133 111-159 (229)
470 3qxb_A Putative xylose isomera 28.3 1.6E+02 0.0054 20.8 7.0 82 19-122 113-200 (316)
471 3lvu_A ABC transporter, peripl 28.2 1.4E+02 0.0049 20.3 6.8 46 85-133 142-187 (258)
472 4dik_A Flavoprotein; TM0755, e 28.1 1.9E+02 0.0066 21.8 6.6 50 84-135 279-331 (410)
473 3kzg_A Arginine 3RD transport 28.0 95 0.0033 20.4 4.6 36 93-131 36-71 (237)
474 1dbw_A Transcriptional regulat 27.9 93 0.0032 18.0 8.3 48 112-163 36-84 (126)
475 1dos_A Aldolase class II; lyas 27.9 84 0.0029 23.5 4.4 70 95-164 24-111 (358)
476 3v7e_A Ribosome-associated pro 27.8 29 0.001 19.6 1.6 46 112-162 16-61 (82)
477 4ep1_A Otcase, ornithine carba 27.7 1.9E+02 0.0064 21.4 7.0 43 107-159 110-152 (340)
478 1rvg_A Fructose-1,6-bisphospha 27.7 77 0.0026 23.1 4.1 53 107-160 25-78 (305)
479 3fvw_A Putative NAD(P)H-depend 27.6 1.3E+02 0.0045 19.7 6.1 36 113-150 59-94 (192)
480 1ml4_A Aspartate transcarbamoy 27.6 1.1E+02 0.0039 22.2 5.0 39 110-158 88-126 (308)
481 1xrs_B D-lysine 5,6-aminomutas 27.5 83 0.0028 22.3 4.2 26 110-135 167-192 (262)
482 2y88_A Phosphoribosyl isomeras 27.4 1.4E+02 0.0047 20.3 5.4 48 113-161 152-200 (244)
483 2pjk_A 178AA long hypothetical 27.3 1.3E+02 0.0046 19.7 5.9 42 89-130 43-88 (178)
484 3v7q_A Probable ribosomal prot 27.2 89 0.003 18.3 3.8 45 112-161 24-68 (101)
485 1x92_A APC5045, phosphoheptose 27.0 56 0.0019 21.5 3.2 37 6-46 114-150 (199)
486 3zxs_A Cryptochrome B, rscryb; 27.0 2.3E+02 0.008 22.3 9.0 74 82-164 63-141 (522)
487 3dzc_A UDP-N-acetylglucosamine 26.9 1.9E+02 0.0066 21.4 7.1 39 3-44 23-61 (396)
488 4aoy_A Isocitrate dehydrogenas 26.9 1.6E+02 0.0056 22.3 5.9 27 16-45 185-211 (402)
489 4gie_A Prostaglandin F synthas 26.8 1.7E+02 0.0058 20.7 9.0 40 100-139 167-206 (290)
490 3r0j_A Possible two component 26.7 1.5E+02 0.0051 20.0 9.4 63 93-163 41-104 (250)
491 2qvg_A Two component response 26.4 1.1E+02 0.0036 18.2 8.2 48 112-163 42-98 (143)
492 3pdi_A Nitrogenase MOFE cofact 26.4 28 0.00097 27.0 1.8 26 109-134 138-164 (483)
493 3g3k_A Glutamate receptor, ion 26.4 68 0.0023 21.6 3.6 38 93-130 42-89 (259)
494 3qay_A Endolysin; amidase A/B 26.3 1.4E+02 0.0048 19.6 6.3 44 86-129 33-83 (180)
495 3aek_B Light-independent proto 26.2 1.1E+02 0.0036 24.1 5.0 25 109-134 101-125 (525)
496 2hpv_A FMN-dependent NADH-azor 26.2 1.4E+02 0.0048 19.6 5.1 12 123-134 94-105 (208)
497 3cu5_A Two component transcrip 26.1 1.1E+02 0.0038 18.3 6.4 48 112-163 38-86 (141)
498 3bzc_A TEX; helix-turn-helix, 26.1 45 0.0015 27.8 2.9 47 113-163 373-422 (785)
499 3kbr_A Cyclohexadienyl dehydra 26.0 57 0.002 21.5 3.1 36 93-131 47-82 (239)
500 3jr2_A Hexulose-6-phosphate sy 26.0 1.5E+02 0.0052 19.8 6.1 22 5-27 6-27 (218)
No 1
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.98 E-value=6.2e-31 Score=178.19 Aligned_cols=157 Identities=25% Similarity=0.325 Sum_probs=122.7
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCc---c-cCCCCCCCCCCCCCCCCCchHHHHH
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTI---A-AGLNPGAIPFGGPSHVEVPAFTAAI 76 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (167)
|.+||++||||+|+++.+..++++|+.+|+.. +++++++||+++... . ..+.... .+... .........
T Consensus 1 M~~~~~~ILv~vD~s~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~ 73 (162)
T 1mjh_A 1 MSVMYKKILYPTDFSETAEIALKHVKAFKTLK---AEEVILLHVIDEREIKKRDIFSLLLGV--AGLNK--SVEEFENEL 73 (162)
T ss_dssp --CCCCEEEEECCSCHHHHHHHHHHHHTCCSS---CCEEEEEEEEEGGGTC---------------------CHHHHHHH
T ss_pred CccccceEEEEeCCCHHHHHHHHHHHHHHhhc---CCeEEEEEEecCccccccccccccccc--ccccc--chhhhHHHH
Confidence 66689999999999999999999999999999 899999999985410 0 0000000 00000 000012234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCC
Q 040308 77 EAHQGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCP 156 (167)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~p 156 (167)
.+...+..++.++.+.+.+...|+++++.+..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++||
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~p 153 (162)
T 1mjh_A 74 KNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKP 153 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCC
Confidence 45556677788888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q 040308 157 VVVVKGKG 164 (167)
Q Consensus 157 Vliv~~~~ 164 (167)
||+||+..
T Consensus 154 Vlvv~~~~ 161 (162)
T 1mjh_A 154 VLVVKRKN 161 (162)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCC
Confidence 99999764
No 2
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.98 E-value=3.5e-31 Score=180.83 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=117.4
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCC--CCCCCCCCchHHHHHHH
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPF--GGPSHVEVPAFTAAIEA 78 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (167)
||+||++||||+|+++.+..++++|+.+|+.+ +++|+++||++......... . ... ..+. .... ...+
T Consensus 1 M~~m~~~ILv~vD~s~~s~~al~~A~~la~~~---~a~l~ll~v~~~~~~~~~~~-~-~~~~~~~~~-~~~~----~~~~ 70 (170)
T 2dum_A 1 MIFMFRKVLFPTDFSEGAYRAVEVFEKRNKME---VGEVILLHVIDEGTLEELMD-G-YSFFYDNAE-IELK----DIKE 70 (170)
T ss_dssp ---CCSEEEEECCSSHHHHHHHHHHHHHCCSC---CSEEEEEEEEETTGGGCCC---------------CCT----TSHH
T ss_pred CccccceEEEEecCCHHHHHHHHHHHHHHHhc---CCEEEEEEEecCcccccccc-c-ccccccccc-ccHH----HHHH
Confidence 78899999999999999999999999999999 99999999987643221100 0 000 0000 0001 1123
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEE--EEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCC
Q 040308 79 HQGRITQAIIDHALKICSEKNVNVKS--EVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCP 156 (167)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~p 156 (167)
...+..++.++.+.+.+...|+++++ .+..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++||
T Consensus 71 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~P 150 (170)
T 2dum_A 71 KLKEEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKP 150 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCC
Confidence 34455666777777777777888888 8889999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 040308 157 VVVVKGKGT 165 (167)
Q Consensus 157 Vliv~~~~~ 165 (167)
||+||+...
T Consensus 151 Vlvv~~~~~ 159 (170)
T 2dum_A 151 VLIIKEVDE 159 (170)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCc
Confidence 999997764
No 3
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.98 E-value=5.4e-31 Score=175.47 Aligned_cols=143 Identities=17% Similarity=0.321 Sum_probs=124.8
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
.+||++||||+|+++.+..++++|+.+|+.. +++++++||++....... ..........+...
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~---~a~l~ll~v~~~~~~~~~--------------~~~~~~~~~~~~~~ 64 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRH---QANLTALYVVDDSAYHTP--------------ALDPVLSELLDAEA 64 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHH---TCEEEEEEEEECCCCCCG--------------GGHHHHHHHHHHHH
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhc---CCEEEEEEEecCcccccc--------------ccccccHHHHHHHH
Confidence 4789999999999999999999999999999 899999999987643311 00113344556667
Q ss_pred HHHHHHHHHHHHHhhhcCC-cEEEEEEecChHhHHHH-HHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE
Q 040308 82 RITQAIIDHALKICSEKNV-NVKSEVVIGDAKEKVCE-LVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~-~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli 159 (167)
+..++.++.+.+.+...|+ ++++.+..|++.+.|++ ++++.++||||||+++++.+.++++||++++++++++||||+
T Consensus 65 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 65 AHAKDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEE
Confidence 7788888999998888899 99999999999999999 999999999999999999999999999999999999999999
Q ss_pred Ec
Q 040308 160 VK 161 (167)
Q Consensus 160 v~ 161 (167)
||
T Consensus 145 V~ 146 (146)
T 3s3t_A 145 IR 146 (146)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 4
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.97 E-value=7.6e-30 Score=171.87 Aligned_cols=140 Identities=20% Similarity=0.249 Sum_probs=119.2
Q ss_pred CCCCcEEEEeec--CChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 040308 2 SGNLGCVIVAVD--GGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAH 79 (167)
Q Consensus 2 ~~~~~~ILv~id--~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (167)
|++|++||||+| +++.+..++++|+.+|+.. +++++++||++....... ........+.
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~~~----------------~~~~~~~~~~ 72 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDY---DVPLGICSVLESEDINIF----------------DSLTPSKIQA 72 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHH---TCCEEEEEEECCCCTTCC----------------CSSHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhc---CCEEEEEEEEeCCCcccc----------------ccCCHHHHHH
Confidence 678999999999 9999999999999999999 899999999987643211 0111234455
Q ss_pred HHHHHHHHHHHHHHHhhhcCC-cEEEEEEe-cChHhHHHHH-HHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCC
Q 040308 80 QGRITQAIIDHALKICSEKNV-NVKSEVVI-GDAKEKVCEL-VEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCP 156 (167)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-g~~~~~I~~~-a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~p 156 (167)
..+..++.++.+.+.+...|+ .+++.+.. |++.++|+++ +++.++||||||+++++.+. .++||++++++++++||
T Consensus 73 ~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~P 151 (156)
T 3fg9_A 73 KRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPIS 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCC
Confidence 666777888888888888898 59999999 9999999999 99999999999999999887 48999999999999999
Q ss_pred EEEEc
Q 040308 157 VVVVK 161 (167)
Q Consensus 157 Vliv~ 161 (167)
||+||
T Consensus 152 VlvV~ 156 (156)
T 3fg9_A 152 VIVVR 156 (156)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.97 E-value=1.8e-30 Score=173.07 Aligned_cols=144 Identities=23% Similarity=0.295 Sum_probs=117.6
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
||++||||+|+|+.+..++++|+.+|+.. +++++++||.+........... . .....+...+...+.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~---~a~l~ll~v~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~ 67 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLT---GAELYILCVFKHHSLLEASLSM-----A-----RPEQLDIPDDALKDY 67 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHH---CCEEEEEEEECCHHHHHHTBSS-----C-----CCGGGCCCTTHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhc---CCEEEEEEEecCcccccccccc-----c-----ChhhhhhHHHHHHHH
Confidence 68999999999999999999999999999 8999999999875411110000 0 011111112334456
Q ss_pred HHHHHHHHHHHhhhcCCcE---EEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 84 TQAIIDHALKICSEKNVNV---KSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
.++.++.+.+.+...|+++ ++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++||||+|
T Consensus 68 ~~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 68 ATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 6777788888888888887 8999999999999999999999999999999999999999999999999999999986
No 6
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.97 E-value=2.4e-29 Score=166.05 Aligned_cols=136 Identities=20% Similarity=0.262 Sum_probs=117.5
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhc-cccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH-H
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNL-KLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG-R 82 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la-~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 82 (167)
|++||||+|+++.+..++++|+.+| +.. +++++++||.++...... .........+... +
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~---~a~l~ll~v~~~~~~~~~---------------~~~~~~~~~~~~~~~ 62 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDA---DCTLTLIHVKPEFMLYGE---------------AVLAAYDEIEMKEEE 62 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCT---TEEEEEEEEECCCCCCHH---------------HHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCC---CCEEEEEEEecCCCcccc---------------cccCcHHHHHHHHHH
Confidence 6899999999999999999999999 988 999999999997643211 0111223344455 7
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 83 ITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..++.++.+.+.+...|+++++.+..|++.++|+++++ ++||||||+++++.+.+++ ||++++++++++||||+||
T Consensus 63 ~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 63 KAKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 77888888999988889999999999999999999999 9999999999999999998 9999999999999999997
No 7
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.97 E-value=4.7e-30 Score=171.73 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=100.4
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
|++|++||||+|+++.+..++++|+.+|+.. +++|+++||+++........... .+. ...+.. +...
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~~~~~~~~----~~~--~~~~~~----~~~~ 69 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQI---GARLSLIHVLDNIPMPDTPYGTA----IPL--DTETTY----DAML 69 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHH---TCEEEEEEEEC--------CTTC----CCS--SSCCCH----HHHH
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhc---CCEEEEEEEEcCccccccccccc----cCc--CHHHHH----HHHH
Confidence 6789999999999999999999999999999 89999999998754321000000 000 011111 2222
Q ss_pred HHHHHHHHHHHHHhhhcCCc-EEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 82 RITQAIIDHALKICSEKNVN-VKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
+..++.++.+. .+.|+. +++.+..|++.++|++++++.++||||||+++++.+. +++||++++++++++||||+|
T Consensus 70 ~~~~~~l~~~~---~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 70 DVEKQKLSQIG---NTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHHHHHHHHH---HHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHH---HHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEE
Confidence 33334444333 333655 4677899999999999999999999999999999999 999999999999999999999
Q ss_pred cCCC
Q 040308 161 KGKG 164 (167)
Q Consensus 161 ~~~~ 164 (167)
|++.
T Consensus 146 ~~~~ 149 (150)
T 3tnj_A 146 RLRD 149 (150)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9864
No 8
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.97 E-value=2.2e-29 Score=171.10 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=114.3
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEE--EEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVL--HVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAH 79 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (167)
..++++||||+|+|+.+..++++|+.+|+ . +++|+++ ||.+......... . ....+.+.
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~---~a~l~ll~a~v~~~~~~~~~~~--------------~-~~~~~~~~ 74 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-A---DAKLIIASAYLPQHEDARAADI--------------L-KDESYKVT 74 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-T---TSEEEEEEECCC----------------------------------
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-C---CCEEEEEEeeeccCcccccccc--------------c-ccHHHHHH
Confidence 35789999999999999999999999999 8 8999999 8876543210000 0 01122233
Q ss_pred HHHHHHHHHHHHHHHhhhcCCc-EEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 80 QGRITQAIIDHALKICSEKNVN-VKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
..+..++.++.+.+.+...|++ +++.+..|++.++|++++++.++||||||+++++.+.++++||++++|+++++||||
T Consensus 75 ~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVl 154 (163)
T 1tq8_A 75 GTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVL 154 (163)
T ss_dssp -CCTHHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEE
Confidence 4556777788888888888998 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC
Q 040308 159 VVKGKGT 165 (167)
Q Consensus 159 iv~~~~~ 165 (167)
+||+...
T Consensus 155 vV~~~~~ 161 (163)
T 1tq8_A 155 IVHTTEG 161 (163)
T ss_dssp EECCC--
T ss_pred EEeCCCC
Confidence 9997654
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.96 E-value=6.9e-29 Score=167.31 Aligned_cols=131 Identities=20% Similarity=0.287 Sum_probs=113.0
Q ss_pred CCCcEEEEeecC-ChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 3 GNLGCVIVAVDG-GEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 3 ~~~~~ILv~id~-s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
+||++||||+|+ ++.+..++++|+.+|+.. +++|+++||.+..... . +...
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~---~a~l~llhV~~~~~~~------------------~-------~~~~ 73 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLR---GVPVYVVHSLPGGGRT------------------K-------DEDI 73 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHH---TCCEEEEEEECCSTTS------------------C-------HHHH
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhc---CCEEEEEEEEcCCCcc------------------c-------HHHH
Confidence 688999999999 999999999999999999 8999999999854211 0 2233
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEE--EEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE
Q 040308 82 RITQAIIDHALKICSEKNVNVKSE--VVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli 159 (167)
+..++.++.+.+.+...++.++.. +..|++.++|++++++.++||||||+++++.+.++++||++++++++++||||+
T Consensus 74 ~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 74 IEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVIC 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEE
Confidence 456667777777778788776654 556999999999999999999999999999999999999999999999999999
Q ss_pred Ec
Q 040308 160 VK 161 (167)
Q Consensus 160 v~ 161 (167)
|+
T Consensus 154 Vr 155 (155)
T 3dlo_A 154 IK 155 (155)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.96 E-value=5.1e-29 Score=164.40 Aligned_cols=136 Identities=24% Similarity=0.357 Sum_probs=106.4
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
||++||||+|+++.+..++++|..+|+.+ +++++++||.++.... +.. . .. +...+...+.
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~--~~~------~-----~~---~~~~~~~~~~ 61 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAH---GARLIVVHAYEPVPDY--LGE------P-----FF---EEALRRRLER 61 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHH---TCEEEEEEEECC------------------------------CHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhc---CCEEEEEEEecCCCcc--ccc------c-----ch---HHHHHHHHHH
Confidence 68999999999999999999999999999 8999999999743211 000 0 00 0112222334
Q ss_pred HHHHHHHHHHHhhhcCC-cEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNV-NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.++.++.+.+. .|+ ++++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++||||+||
T Consensus 62 ~~~~l~~~~~~---~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 62 AEGVLEEARAL---TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHHHHHHHH---HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHH---cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 44444444433 577 7778888999999999999999999999999999999999999999999999999999997
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.96 E-value=4.6e-28 Score=166.08 Aligned_cols=150 Identities=24% Similarity=0.472 Sum_probs=108.3
Q ss_pred CCcEEEEeecCCh---------hHHHHHHHHHHhc-cc--cCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCch
Q 040308 4 NLGCVIVAVDGGE---------ESMDALRWAIDNL-KL--RSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPA 71 (167)
Q Consensus 4 ~~~~ILv~id~s~---------~s~~al~~a~~la-~~--~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (167)
.+++||||+|+++ .+..++++|+.++ +. . +++|+++||++.......... . ......
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~---~a~l~ll~v~~~~~~~~~~~~------~--~~~~~~ 72 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTS---DFKILLLHVQVVDEDGFDDVD------S--IYASPE 72 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTT---SEEEEEEEEEC----------------C--CCCSHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCC---CCEEEEEEEeecccccccccc------c--ccCCHH
Confidence 6799999999999 9999999999987 43 6 799999999875421110000 0 001122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh
Q 040308 72 FTAAIEAHQGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN 151 (167)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~ 151 (167)
..+.+.+...+..++.++.+.+.+...|+++++++..|++.+.|++++++.++||||||+++++.+.++++||++++|++
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~ 152 (175)
T 2gm3_A 73 DFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVK 152 (175)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHh
Confidence 22233333444566777888887778899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEcCCC
Q 040308 152 HAQCPVVVVKGKG 164 (167)
Q Consensus 152 ~~~~pVliv~~~~ 164 (167)
+++||||+||...
T Consensus 153 ~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 153 HAECPVMTIKRNA 165 (175)
T ss_dssp HCSSCEEEEECCG
T ss_pred CCCCCEEEEcCCc
Confidence 9999999999754
No 12
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.95 E-value=3.6e-27 Score=175.41 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=122.7
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
|++|++|||++|+|+.+..+++||+.+|+.. +++|+++|+++....... ........+...+...
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~---~a~l~ll~v~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRN---GGRIKAFLPVYDLSYDMT------------TLLSPDERNAMRKGVI 68 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHH---CCEEEEEEEECCGGGGCT------------TTSCHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHc---CCeEEEEEEecccchhhc------------cccChhhHHHHHHHHH
Confidence 7789999999999999999999999999999 999999999875432211 0112333444455555
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEE-ecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 82 RITQAIIDHALKICSEKNVNVKSEVV-IGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
+..++.++.+.+.+...|+++++.+. .|++.+.|.+++++.++||||||+++++.+.+.++||++++++++++||||+|
T Consensus 69 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv 148 (319)
T 3olq_A 69 NQKTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMV 148 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEe
Confidence 66777888888887788999999988 89999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 040308 161 KGKG 164 (167)
Q Consensus 161 ~~~~ 164 (167)
|+..
T Consensus 149 ~~~~ 152 (319)
T 3olq_A 149 KDKE 152 (319)
T ss_dssp ESSC
T ss_pred cCcc
Confidence 9764
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.95 E-value=1.2e-27 Score=158.69 Aligned_cols=137 Identities=22% Similarity=0.317 Sum_probs=106.1
Q ss_pred cEEEEeecCChh--HHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 6 GCVIVAVDGGEE--SMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 6 ~~ILv~id~s~~--s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
++||||+|+|+. +..++++|+.+|+.. +++++++||.+........... .... .+..++.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~~~~~~~-----------~~~~----~~~~~~~ 63 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID---DAEVHFLTVIPSLPYYASLGMA-----------YTAE----LPGMDEL 63 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH---TCEEEEEEEECC-------------------------------CHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc---CCeEEEEEEecCCccccccccc-----------ccch----hhhHHHH
Confidence 799999999999 999999999999999 8999999999875432111000 0000 1122333
Q ss_pred HHHHHHHHHHHhhhcC---CcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 84 TQAIIDHALKICSEKN---VNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
.++.++.+.+.+.+.+ +++++.+..|++.++|++++++.++||||||+++ +.+.++++||++++++++++||||+|
T Consensus 64 ~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 64 REGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 4455555666666665 5678889999999999999999999999999995 88899999999999999999999999
Q ss_pred c
Q 040308 161 K 161 (167)
Q Consensus 161 ~ 161 (167)
|
T Consensus 143 ~ 143 (143)
T 3fdx_A 143 R 143 (143)
T ss_dssp C
T ss_pred C
Confidence 7
No 14
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.95 E-value=1.4e-27 Score=175.99 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=121.0
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQ 80 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
||+||++||||+|+++.+..++++|+.+|+.. +++|+++||++........ .......+.+..
T Consensus 18 ~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~---~a~l~ll~v~~~~~~~~~~--------------~~~~~~~~~~~~ 80 (294)
T 3loq_A 18 LYFQSNAMLLPTDLSENSFKVLEYLGDFKKVG---VEEIGVLFVINLTKLSTVS--------------GGIDIDHYIDEM 80 (294)
T ss_dssp CSSTTCEEEEECCSCTGGGGGGGGHHHHHHTT---CCEEEEECCEECTTC-------------------CCCTTHHHHHH
T ss_pred HHHhhccEEEecCCCHHHHHHHHHHHHHHhhc---CCEEEEEEEecCccccccc--------------ccccHHHHHHHH
Confidence 68899999999999999999999999999999 9999999999876533110 001112233445
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEE-EEE-ecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 81 GRITQAIIDHALKICSEKNVNVKS-EVV-IGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
.+..++.++.+.+.+...|+++++ .+. .|++.++| ++++.++||||||+++++.+.++++||++++++++++||||
T Consensus 81 ~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVl 158 (294)
T 3loq_A 81 SEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVY 158 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEE
Confidence 556777788888888888999998 777 89999999 89999999999999999999999999999999999999999
Q ss_pred EEcCCC
Q 040308 159 VVKGKG 164 (167)
Q Consensus 159 iv~~~~ 164 (167)
+||+..
T Consensus 159 vv~~~~ 164 (294)
T 3loq_A 159 IFKHDM 164 (294)
T ss_dssp EECCCT
T ss_pred EecCcc
Confidence 999865
No 15
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.95 E-value=4e-27 Score=155.91 Aligned_cols=138 Identities=21% Similarity=0.233 Sum_probs=104.5
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC-CCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP-PTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGR 82 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (167)
||++||||+|+++.+..++++|..+|+.. +++++++||.+. +..... ......+...+...+
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 63 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRH---DAKLSIIHVDVNFSDLYTG--------------LIDVNMSSMQDRIST 63 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHH---TCEEEEEEEEECCGGGCCC--------------CEEHHHHHHTTCCCC
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhc---CCEEEEEEEecCchhhhcc--------------ccccchHHHHHHHHH
Confidence 68999999999999999999999999999 899999999853 211100 011111111111222
Q ss_pred HHHHHHHHHHHHhhhcCCcE-EEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 83 ITQAIIDHALKICSEKNVNV-KSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..++.++. .+...|+++ +..+..|++.+.|++++++.++||||||++ ++.+.+ +||++++++++++||||+||
T Consensus 64 ~~~~~l~~---~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 64 ETQKALLD---LAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHHHHHH---HHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHH---HHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEee
Confidence 33344443 334457665 567888999999999999999999999999 888877 48999999999999999999
Q ss_pred CCC
Q 040308 162 GKG 164 (167)
Q Consensus 162 ~~~ 164 (167)
++.
T Consensus 138 ~~~ 140 (141)
T 1jmv_A 138 LRD 140 (141)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.93 E-value=7.5e-26 Score=166.47 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=110.2
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQ 80 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
||+||++|||++|+++.+..++++|+.+|+.. +++++++|+.++
T Consensus 3 ~M~~~~~ILv~~D~s~~s~~al~~A~~la~~~---~a~l~ll~v~~~--------------------------------- 46 (290)
T 3mt0_A 3 AMQAIRSILVVIEPDQLEGLALKRAQLIAGVT---QSHLHLLVCEKR--------------------------------- 46 (290)
T ss_dssp TTTTCCEEEEECCSSCSCCHHHHHHHHHHHHH---CCEEEEEEECSS---------------------------------
T ss_pred hhhhhceEEEEeCCCccchHHHHHHHHHHHhc---CCeEEEEEeeCc---------------------------------
Confidence 68899999999999999999999999999999 899999999872
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEE-ecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE
Q 040308 81 GRITQAIIDHALKICSEKNVNVKSEVV-IGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159 (167)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli 159 (167)
+..++.++++.+.+...|+++++.+. .|++.+.|.+++++.++||||||+++++.+.+.++||++++++++++||||+
T Consensus 47 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlv 125 (290)
T 3mt0_A 47 -RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLM 125 (290)
T ss_dssp -SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEE
T ss_pred -HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEE
Confidence 01223344444555677899999887 5789999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q 040308 160 VKGK 163 (167)
Q Consensus 160 v~~~ 163 (167)
||+.
T Consensus 126 v~~~ 129 (290)
T 3mt0_A 126 TKTA 129 (290)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9954
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.93 E-value=4.5e-25 Score=163.65 Aligned_cols=143 Identities=27% Similarity=0.381 Sum_probs=114.2
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
..++++|||++|+++.+..++++|+.+|+.. +++|+++||+++...... . ..... ...+...
T Consensus 16 ~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~---~a~l~ll~v~~~~~~~~~--~---------~~~~~----~~~~~~~ 77 (309)
T 3cis_A 16 GNSSLGIIVGIDDSPAAQVAVRWAARDAELR---KIPLTLVHAVSPEVATWL--E---------VPLPP----GVLRWQQ 77 (309)
T ss_dssp --CTTEEEEECCSSHHHHHHHHHHHHHHHHH---TCCEEEEEECCCCCCCTT--C---------CCCCH----HHHHHHH
T ss_pred cCCCCeEEEEECCCHHHHHHHHHHHHHHHhc---CCcEEEEEEecCcccccc--c---------CCCCc----hhhHHHH
Confidence 4678999999999999999999999999999 899999999874321100 0 00111 1223334
Q ss_pred HHHHHHHHHHHHHhhhc-----CCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCC
Q 040308 82 RITQAIIDHALKICSEK-----NVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCP 156 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-----~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~p 156 (167)
+..++.++.+.+.+... ++++++.+..|++.+.|+++++ ++||||||+++++.+.++++||++++++++++||
T Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~P 155 (309)
T 3cis_A 78 DHGRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCP 155 (309)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCC
Confidence 45556666666666654 8999999999999999999997 9999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q 040308 157 VVVVKGKG 164 (167)
Q Consensus 157 Vliv~~~~ 164 (167)
||+||...
T Consensus 156 Vlvv~~~~ 163 (309)
T 3cis_A 156 VVIIHDED 163 (309)
T ss_dssp EEEECTTC
T ss_pred EEEEcCCc
Confidence 99999764
No 18
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.92 E-value=5.4e-25 Score=160.03 Aligned_cols=147 Identities=18% Similarity=0.095 Sum_probs=115.4
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchH---HHHHHHHHHH
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAF---TAAIEAHQGR 82 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 82 (167)
++||||+|+|+.+..++++|+.+|+.. +++++++||++.......... +... ...+. .+...+...+
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~---~a~l~ll~v~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~ 70 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKL---SAPLTVLFVVDTRLARIPELL-----DFGA--LTVPVPVLRTELERALAL 70 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHH---TCCEEEEEEEEHHHHTHHHHC--------------CHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHh---CCcEEEEEEeccCCccccccc-----CchH--HHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999 899999999875431100000 0000 00111 1111334456
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCC-ccceecccchhHHHHhcCCCCEEEEc
Q 040308 83 ITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFG-PIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~-~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..++.++.+.+.+...|+++++.+..|++.+.|+++ +.++||||||+++++ .+.++++||++++++++++||||+||
T Consensus 71 ~~~~~l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~ 148 (268)
T 3ab8_A 71 RGEAVLERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAP 148 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEEC
Confidence 677788888888888899999999999999999999 679999999999998 89999999999999999999999999
Q ss_pred CCC
Q 040308 162 GKG 164 (167)
Q Consensus 162 ~~~ 164 (167)
+..
T Consensus 149 ~~~ 151 (268)
T 3ab8_A 149 GEP 151 (268)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.92 E-value=1.1e-24 Score=143.71 Aligned_cols=132 Identities=16% Similarity=0.111 Sum_probs=100.6
Q ss_pred CCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEe-CC-CCcc-cCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 040308 3 GNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQ-PP-PTIA-AGLNPGAIPFGGPSHVEVPAFTAAIEAH 79 (167)
Q Consensus 3 ~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (167)
.||++||||+|+++.+..++++|..+|+.+ +++++++||. +. +... ... . +.+. .. ...+.
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~~~~~~~-~-----~~~~---~~----~~~~~ 65 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKL---GAELDILAVLEDVYNLERANVT-F-----GLPF---PP----EIKEE 65 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTT---CCEEEEEEECHHHHHHHHHHHH-H-----CCCC---CT----HHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHc---CCeEEEEEEecccccccccccc-c-----CCCC---Ch----HHHHH
Confidence 578999999999999999999999999999 8999999998 63 1110 000 0 0000 01 12233
Q ss_pred HHHHHHHHHHHHHHH--hhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCE
Q 040308 80 QGRITQAIIDHALKI--CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPV 157 (167)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pV 157 (167)
..+..++.++.+ +. +...| ++++.+..|++.+.|++++++.++||||||++++ |++++++++++|||
T Consensus 66 ~~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PV 134 (138)
T 1q77_A 66 SKKRIERRLREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLAS 134 (138)
T ss_dssp HHHHHHHHHHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEE
T ss_pred HHHHHHHHHHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCce
Confidence 334455555555 54 34556 7888888999999999999999999999999875 89999999999999
Q ss_pred EEEc
Q 040308 158 VVVK 161 (167)
Q Consensus 158 liv~ 161 (167)
|+||
T Consensus 135 lvv~ 138 (138)
T 1q77_A 135 LIVK 138 (138)
T ss_dssp EECC
T ss_pred EeeC
Confidence 9997
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=2.8e-24 Score=158.05 Aligned_cols=138 Identities=18% Similarity=0.267 Sum_probs=106.6
Q ss_pred CCcEEEEeecCChh-------HHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHH
Q 040308 4 NLGCVIVAVDGGEE-------SMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAI 76 (167)
Q Consensus 4 ~~~~ILv~id~s~~-------s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (167)
.+++||||+|+++. +.+++++|..+|+.. +++++++||++....... .+.. ..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~~~---------------~~~~--~~ 192 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA---KATLHVISAHPSPMLSSA---------------DPTF--QL 192 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT---TCEEEEEEEEC------------------------CH--HH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc---CCeEEEEEEecCcccccc---------------Cchh--HH
Confidence 57999999999998 999999999999999 899999999986543211 0111 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC-cEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCC
Q 040308 77 EAHQGRITQAIIDHALKICSEKNV-NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQC 155 (167)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~ 155 (167)
.+...+..++.++ +++.+.|+ .++..+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++|
T Consensus 193 ~~~~~~~~~~~l~---~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~ 269 (290)
T 3mt0_A 193 SETIEARYREACR---TFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLES 269 (290)
T ss_dssp HHHHHHHHHHHHH---HHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHH---HHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCC
Confidence 2222233333333 34444576 3567788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCC
Q 040308 156 PVVVVKGKG 164 (167)
Q Consensus 156 pVliv~~~~ 164 (167)
|||+||+.+
T Consensus 270 pVLvv~~~~ 278 (290)
T 3mt0_A 270 DVLVLKPDD 278 (290)
T ss_dssp EEEEECCHH
T ss_pred CEEEECCCC
Confidence 999999753
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.91 E-value=2.4e-23 Score=153.27 Aligned_cols=126 Identities=23% Similarity=0.289 Sum_probs=111.7
Q ss_pred CCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 040308 3 GNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGR 82 (167)
Q Consensus 3 ~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (167)
..+++|||++|+++.+.+++++|..+++.. +++++++||.+...
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~---~~~l~ll~v~~~~~--------------------------------- 211 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKT---GGELHIIHVSEDGD--------------------------------- 211 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHH---TCEEEEEEECSSSC---------------------------------
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhc---CCEEEEEEEccCch---------------------------------
Confidence 467999999999999999999999999999 89999999998531
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 83 ITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.++.++.+.+.+.+.++++++.+..|++.+.|.+++++.++||||||+++++.+.++++||++++++++++||||+||+
T Consensus 212 -~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 212 -KTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKR 290 (294)
T ss_dssp -CHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECS
T ss_pred -HHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECC
Confidence 1233445555666678889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 040308 163 KGT 165 (167)
Q Consensus 163 ~~~ 165 (167)
+..
T Consensus 291 ~~~ 293 (294)
T 3loq_A 291 GDD 293 (294)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=1.8e-23 Score=155.35 Aligned_cols=147 Identities=15% Similarity=0.204 Sum_probs=112.1
Q ss_pred CCcEEEEeecCCh-------hHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHH
Q 040308 4 NLGCVIVAVDGGE-------ESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAI 76 (167)
Q Consensus 4 ~~~~ILv~id~s~-------~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (167)
.+++|||++|+++ .+.+++++|..+|+.+.| +++++++||++......... . .....+.+
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~-~a~l~ll~v~~~~~~~~~~~-------~-----~~~~~~~~ 221 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQK-DPDVHLLSAYPVAPINIAIE-------L-----PDFDPNLY 221 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCS-SCCEEEEEEECCCSCSCCTT-------C-----TTCCHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccC-CCeEEEEEeecCcchhhhcc-------C-----CcccHHHH
Confidence 5799999999999 679999999999998733 58999999998765432100 0 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC-cEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCC
Q 040308 77 EAHQGRITQAIIDHALKICSEKNV-NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQC 155 (167)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~ 155 (167)
.+...+..++.+ .+++.++++ .++..+..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++|
T Consensus 222 ~~~~~~~~~~~l---~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~ 298 (319)
T 3olq_A 222 NNALRGQHLIAM---KELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKC 298 (319)
T ss_dssp HHHHHHHHHHHH---HHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHH---HHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCC
Confidence 233333333333 344455665 4566788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCC
Q 040308 156 PVVVVKGKGTS 166 (167)
Q Consensus 156 pVliv~~~~~~ 166 (167)
|||+||+.+..
T Consensus 299 pVLvv~~~~~~ 309 (319)
T 3olq_A 299 DLLAIKPDGFT 309 (319)
T ss_dssp EEEEECCTTCC
T ss_pred CEEEECCCCCC
Confidence 99999987653
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.90 E-value=6.2e-23 Score=152.11 Aligned_cols=136 Identities=26% Similarity=0.295 Sum_probs=107.1
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
.+++|||++|+++.+..++++|..+|+.. +++++++||+++..... . .....+.. .+.
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~---~a~l~ll~v~~~~~~~~----------~-----~~~~~~~~----~~~ 227 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRR---NVDLVALHAWSDVDVSE----------W-----PGIDWPAT----QSM 227 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHT---TCCEEEEEESCSSCCTT----------C-----SSCCHHHH----HHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhc---CCEEEEEEEeecccccC----------C-----CcccHHHH----HHH
Confidence 57899999999999999999999999999 89999999987543210 0 01111112 222
Q ss_pred HHHHHHHHHHHhhh--cCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSE--KNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.++.++.+.+.+.. .++.++..+..|++.+.|+++++ ++||||||+++++.+.++++||++++|+++++||||+||
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 228 AEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp HHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeC
Confidence 33333333333332 47888888999999999999998 999999999999999999999999999999999999999
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
+.
T Consensus 306 ~~ 307 (309)
T 3cis_A 306 ES 307 (309)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.86 E-value=5.2e-21 Score=138.98 Aligned_cols=116 Identities=24% Similarity=0.318 Sum_probs=100.3
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
.+++||||+|+++.+.+++++|..++... +++++++|+.++. +.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~---~a~l~ll~v~~~~---------------------------------~~ 196 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARAL---GLGVRVVSVHEDP---------------------------------AR 196 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHH---TCCEEEEEECSSH---------------------------------HH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcC---CCEEEEEEEcCcH---------------------------------HH
Confidence 46899999999999999999999999999 8999999998731 01
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.++.++.+.+.+...|+++++.+..|++.+.|++++++. ||||||+ .+.++++||++++++++++||||++|
T Consensus 197 ~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 197 AEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 233445556666677899998888999999999999976 9999998 57888999999999999999999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.60 E-value=0.0047 Score=39.51 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=91.3
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCC-CeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAP-GSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~-~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
|++|||.+.-.-.+.........+.... . .++++|--.++ ...+ .. ...+..+.
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~---~~~~f~VLVPa~~---~~a~--------------~~-----e~~~a~~~ 55 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQD---PEARFVLLVPAVP---PPGW--------------VY-----EENEVRRR 55 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHC---TTCEEEEEEEEEC---CCCS--------------CC-------CHHHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCC---CceEEEEEecCCC---Cccc--------------cc-----ChHHHHHH
Confidence 5899999998877776666656666555 4 55544432222 1110 01 12234455
Q ss_pred HHHHHHHHHHHhhhcCCcEE-EEEEecChHhHHHHHHHHhC--CCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 84 TQAIIDHALKICSEKNVNVK-SEVVIGDAKEKVCELVEKLH--ADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~v~~g~~~~~I~~~a~~~~--~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
+++.++.....++..|+..+ -.+..++|...+.....+.+ +|-||+-+.. ...+++|.-..+.+.=+ ..+||+=+
T Consensus 56 A~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~P-h~vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 56 AEEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLP-PGLSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECC-TTTCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCC-chHHHHHhccHHHHHHh-cCCCEEEE
Confidence 66777777788888999988 88999999999999999988 9999999874 45777887788887766 89999865
No 26
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.22 E-value=0.011 Score=42.86 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 040308 21 ALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSEKNV 100 (167)
Q Consensus 21 al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (167)
++-.|-.|...+ +++|.++.|++. +...+.+++.++.+.+.++ .+.
T Consensus 181 mlllAylL~~nW---~A~I~L~~vV~d------------------------------e~a~~~a~~~l~~Lv~~~R-i~a 226 (294)
T 3g40_A 181 ALLIAYKLKSNW---KASLSFMTFAPT------------------------------AIQAQAAENFLQSLAELAR-IPN 226 (294)
T ss_dssp HHHHHHHHHHHH---TCEEEEEEECSS------------------------------HHHHHHHHHHHHHHHHHHT-CCS
T ss_pred HHHHHHHHhhCc---CCeEEEEEecCC------------------------------HHHHHHHHHHHHHHHHHhc-CCc
Confidence 455555556667 899999999883 3344556666666666654 343
Q ss_pred cEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCCCCCC
Q 040308 101 NVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGKGTSS 167 (167)
Q Consensus 101 ~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~~~~~ 167 (167)
... .+ . .+..+|+..+. ++||+++|-.....++ +.+.++..+...+|.+...+..|
T Consensus 227 ~~~-vv-~-~~F~~il~~s~--~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~dsg~e~ 282 (294)
T 3g40_A 227 VKM-QV-L-RENPIKSSKLP--FASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALDSGEEN 282 (294)
T ss_dssp CEE-EE-E-SSCTTTSSSCC--CCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEECCSCCC
T ss_pred eEE-Ee-c-CchHHHHhhCc--CCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecCchhH
Confidence 433 23 3 55666665554 8999999987655554 56789999999999999877653
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=95.89 E-value=0.16 Score=37.32 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=64.0
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCe-EEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGS-FIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGR 82 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~-l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (167)
.-++|+|++.+..+|..++..+..+.+.. +.+ ++++|+-.... .
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~---g~~~v~av~vd~g~r--------------------------------~ 67 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYF---SLKEVALAHFNHMLR--------------------------------E 67 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTT---TCSEEEEEEEECCSS--------------------------------T
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHc---CCCEEEEEEEECCCC--------------------------------c
Confidence 34789999999999998888888877666 667 99999965321 0
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEe--------c-Ch--------HhHHHHHHHHhCCCEEEEeecC
Q 040308 83 ITQAIIDHALKICSEKNVNVKSEVVI--------G-DA--------KEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliV~g~~~ 133 (167)
....-.+.+.+.+...|+++...-.. | ++ ...+.+.+++.+++.|+.|++.
T Consensus 68 ~s~~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 68 SAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred ccHHHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 01122344556666778876655322 1 11 1244566788899999999874
No 28
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=95.88 E-value=0.093 Score=35.18 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=51.0
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHH---HhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVE---KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++.+.+++.|++++..+..- ...+.+.++++ +.+++.+|.|+.+...+.+. +.-.++.||+-||..
T Consensus 38 ~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGv--------vAa~T~~PVIGVPv~ 109 (181)
T 4b4k_A 38 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM--------VAAKTNLPVIGVPVQ 109 (181)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH--------HHTTCCSCEEEEECC
T ss_pred HHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhh--------HHhcCCCCEEEEecC
Confidence 4455666778899999988776 45666666654 46789999998877666543 555888999999975
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 110 s 110 (181)
T 4b4k_A 110 S 110 (181)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=95.68 E-value=0.13 Score=40.01 Aligned_cols=96 Identities=24% Similarity=0.311 Sum_probs=67.5
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
.-++|+|++.+..+|..++..+..+.... +.+++++|+-.... . ..
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~---~~~v~avhvdhglr--------------------g-----------~~ 62 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEW---KLQVIAAHVDHMFR--------------------G-----------RE 62 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTT---TCBCEEEEEECTTC--------------------T-----------HH
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHc---CCeEEEEEEECCCC--------------------c-----------cc
Confidence 34789999999999999999888887777 78999999976321 0 11
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe--------c-Ch--------HhHHHHHHHHhCCCEEEEeecC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI--------G-DA--------KEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliV~g~~~ 133 (167)
...-.+.+.+.|...|+++...-.. | ++ ...+.+++++.+++.|+.|++.
T Consensus 63 s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 63 SEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred cHHHHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 2223455667777888877665332 1 11 2345567788899999999864
No 30
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=95.66 E-value=0.25 Score=38.54 Aligned_cols=116 Identities=19% Similarity=0.103 Sum_probs=77.6
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHAL 92 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
|..-....+|..|...+... +..+..++++++..... -........+-++.+.
T Consensus 46 DLRl~DN~aL~~A~~~a~~~---~~~v~~vfi~dp~~~~~------------------------~~~r~~Fl~~sL~~L~ 98 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEA---NVPVVVVFCLTDEFLEA------------------------GIRQYEFMLKGLQELE 98 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHH---TSCEEEEEEECTTGGGS------------------------CHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHc---CCcEEEEEEeChhhhcc------------------------CHHHHHHHHHHHHHHH
Confidence 44445677888888887666 67899999998653210 0122234455566667
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+.+++.|+++ .+..|++.+.|.+++++.+++.|+..... ..... ...+.+....+|++..+..
T Consensus 99 ~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~----~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 99 VSLSRKKIPS--FFLRGDPGEKISRFVKDYNAGTLVTDFSP-LRIKN----QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp HHHHHTTCCE--EEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHH----HHHHHHHHHCCSCEEEECC
T ss_pred HHHHHcCCcE--EEEeCCHHHHHHHHHHHcCCCEEEEeccc-chhHH----HHHHHHHHHcCCEEEEEeC
Confidence 7777778775 44679999999999999999999986542 22221 2234455555888887764
No 31
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=95.29 E-value=0.12 Score=34.39 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHH---HhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVE---KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++.+.++..|++++..+..- ...+.+.++++ +.+++.+|.++.+...+... +.-.+++||+-||-+
T Consensus 28 ~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv--------vA~~t~~PVIgVPv~ 99 (173)
T 4grd_A 28 MKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM--------LAAKTTVPVLGVPVA 99 (173)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH--------HHHHCCSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh--------heecCCCCEEEEEcC
Confidence 3444566677899999888775 45556666554 46889999998877666542 445788999999854
No 32
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=95.10 E-value=0.17 Score=33.61 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=49.5
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHH---HHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELV---EKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a---~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++...++..|++++..+..- ...+.+.+++ ++.+++.+|.+......+.. -+.-.+++||+-||..
T Consensus 22 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~~ 93 (169)
T 3trh_A 22 METAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAG--------TIAAHTLKPVIGVPMA 93 (169)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHH--------HHHHTCSSCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--------HHHhcCCCCEEEeecC
Confidence 4455566678899999888775 4555555554 45688999999887666654 3556789999999975
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 94 ~ 94 (169)
T 3trh_A 94 G 94 (169)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=95.08 E-value=0.16 Score=33.36 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=51.1
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+++...++..|++++..+..- ...+.+.+++++...+.+|.+......+.. -+.-.+++||+-||.
T Consensus 15 ~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpg--------vva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 15 AEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPG--------VVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHH--------HHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHH--------HHHhccCCCEEEecC
Confidence 3455566677899999888775 678888889887666999999887666654 355678899999986
No 34
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=95.00 E-value=0.19 Score=33.48 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHH---HhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVE---KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++...++..|++++..+..- ...+.+.++++ +.+++.+|.+......+.. -+.-.+++||+-||..
T Consensus 28 ~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~~ 99 (174)
T 3kuu_A 28 MQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPG--------MLAAKTLVPVLGVPVQ 99 (174)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHH--------HHHHTCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--------HHHhccCCCEEEeeCC
Confidence 3455566678899999888775 56666667665 4678999999887666654 3556788999999865
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 100 ~ 100 (174)
T 3kuu_A 100 S 100 (174)
T ss_dssp C
T ss_pred C
Confidence 3
No 35
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=94.91 E-value=0.72 Score=36.54 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=83.0
Q ss_pred EEEEee--cCChhHHHHHHHHHHhccc--cCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 040308 7 CVIVAV--DGGEESMDALRWAIDNLKL--RSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGR 82 (167)
Q Consensus 7 ~ILv~i--d~s~~s~~al~~a~~la~~--~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (167)
.+|+=+ |..-....+|..|+..+.. . +..+..++++++....... . -.....
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~---~~pv~~vfi~dp~~~~~~~-~--------------------~~~r~~ 85 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPG---RYFVRPIFILDPGILDWMQ-V--------------------GANRWR 85 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTT---TEEEEEEEEECTTGGGCTT-S--------------------CHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccC---CCeEEEEEEECchhhcccC-C--------------------CHHHHH
Confidence 435544 6666777888888887654 4 5679999999875432100 0 011223
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 83 ITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
...+-++.+.+.+++.|+++ .+..|++.+.|.+++++.+++-|+.-.. ..+... -.-.-....+...+|++..+..
T Consensus 86 Fl~~sL~~L~~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~-~rd~~v~~~~~~~gi~~~~~~~ 161 (543)
T 2wq7_A 86 FLQQTLEDLDNQLRKLNSRL--FVVRGKPAEVFPRIFKSWRVEMLTFETD-IEPYSV-TRDAAVQKLAKAEGVRVETHCS 161 (543)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--EEEESCHHHHHHHHHHHTTEEEEEEECC-CSHHHH-HHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEecC-cCHHHH-HHHHHHHHHHHHcCCEEEEecC
Confidence 44455666667777778765 3467999999999999999999888754 233332 1233445566666888887765
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 162 ~ 162 (543)
T 2wq7_A 162 H 162 (543)
T ss_dssp S
T ss_pred C
Confidence 4
No 36
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=94.90 E-value=0.85 Score=35.59 Aligned_cols=136 Identities=10% Similarity=-0.013 Sum_probs=81.3
Q ss_pred CCCCCcEEEEee--cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHH
Q 040308 1 MSGNLGCVIVAV--DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEA 78 (167)
Q Consensus 1 ~~~~~~~ILv~i--d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (167)
|||+.+.+||=+ |..-....+|..|+. . +..+..++++++......... . ... -.
T Consensus 1 ~~m~~~~~l~WfrrDLRl~DN~aL~~A~~----~---~~~v~~vfi~dp~~~~~~~~~------~------~~~----~~ 57 (489)
T 1np7_A 1 MKHVPPTVLVWFRNDLRLHDHEPLHRALK----S---GLAITAVYCYDPRQFAQTHQG------F------AKT----GP 57 (489)
T ss_dssp CCCCCCEEEEEESSCCCSTTCHHHHHHHH----T---TSEEEEEEEECGGGGSBCTTS------C------BSS----CH
T ss_pred CCCCCCcEEEEeCCCCCcchHHHHHHHHh----c---CCCEEEEEEECchhhcccccc------c------CCC----CH
Confidence 455445555555 666667778887764 2 457889999886533210000 0 000 01
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 79 HQGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
.......+-++.+.+.+++.|+++ .+..|++.+.|.+++++.+++-|+.-.. ..+.... .-..+.+.+...+|++.
T Consensus 58 ~r~~Fl~~sL~~L~~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~-rd~~v~~~l~~~gi~~~ 133 (489)
T 1np7_A 58 WRSNFLQQSVQNLAESLQKVGNKL--LVTTGLPEQVIPQIAKQINAKTIYYHRE-VTQEELD-VERNLVKQLTILGIEAK 133 (489)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCE--EEEESCHHHHHHHHHHHTTEEEEEEECC-CSHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcE--EEEECCHHHHHHHHHHHcCCCEEEEecc-cCHHHHH-HHHHHHHHHHhcCCeEE
Confidence 122344455666666777778775 4467999999999999999998888754 3333322 22333445555678887
Q ss_pred EEcCC
Q 040308 159 VVKGK 163 (167)
Q Consensus 159 iv~~~ 163 (167)
.+...
T Consensus 134 ~~~~~ 138 (489)
T 1np7_A 134 GYWGS 138 (489)
T ss_dssp EECCS
T ss_pred EecCC
Confidence 76653
No 37
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=94.84 E-value=0.22 Score=33.12 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=50.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHH---hCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEK---LHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~---~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++...++..|++++..+..- ...+.+.+++++ .+++.+|.+......+.. -+.-.+++||+-||..
T Consensus 27 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 27 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG--------MVAAKTNLPVIGVPVQ 98 (170)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHTTCCSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--------HHHhccCCCEEEeeCC
Confidence 3445566677899999888765 566777777664 458999999887666654 3556788999999975
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 99 ~ 99 (170)
T 1xmp_A 99 S 99 (170)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=94.75 E-value=0.22 Score=32.94 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=50.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHH---hCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEK---LHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~---~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++.+.++..|+.++..+..- ...+.+.+++++ .+++.+|.+......+.. -+.-.+++||+-||..
T Consensus 21 ~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~~ 92 (166)
T 3oow_A 21 MKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPG--------MVAAKTTLPVLGVPVK 92 (166)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--------HHHHTCSSCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHH--------HHHhccCCCEEEeecC
Confidence 4455566678899999888775 456777777654 468999999887666654 3556789999999975
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 93 ~ 93 (166)
T 3oow_A 93 S 93 (166)
T ss_dssp C
T ss_pred c
Confidence 3
No 39
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=94.75 E-value=0.51 Score=37.12 Aligned_cols=119 Identities=16% Similarity=0.059 Sum_probs=75.2
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHAL 92 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
|..-....||.+|+..|... +..|+.++++++...... . -........+-++.+.
T Consensus 47 DLRl~DN~AL~~A~~~a~~~---~~pVl~vfildp~~~~~~----------------~------~~~r~~FL~~sL~dL~ 101 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAAS---ASPLAVAFALFPRPFLLS----------------A------RRRQLGFLLRGLRRLA 101 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHH---TCCEEEEEECCCTTCGGG----------------C------CHHHHHHHHHHHHHHH
T ss_pred CcchhhcHHHHHHHHhhhhc---CCCEEEEEeccchhhccC----------------C------CHHHHHHHHHHHHHHH
Confidence 55556678899999888777 678999999987521100 0 0122234455566666
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCcccee-cccchhHHHHh--cCCCCEEEEcC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRM-FLGSVSNYCAN--HAQCPVVVVKG 162 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~-~~gs~~~~i~~--~~~~pVliv~~ 162 (167)
+.+++.|++. .+..|++.+. .+++++.+++.|+.. ....... -....+...++ ..+|++..+..
T Consensus 102 ~~L~~lG~~L--~v~~G~p~~v-~~L~~~~~a~~V~~d---~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~ 168 (506)
T 3umv_A 102 ADAAARHLPF--FLFTGGPAEI-PALVQRLGASTLVAD---FSPLRPVREALDAVVGDLRREAPGVAVHQVDA 168 (506)
T ss_dssp HHHHHTTCCE--EEESSCTTHH-HHHHHHTTCSEEEEC---CCCCHHHHHHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HHHHHcCCce--EEEecChHHH-HHHHHhcCCCEEEec---cChhHHHHHHHHHHHHHHhhccCCeEEEEeCC
Confidence 6777777765 4578999999 999999999999973 2222210 01122233333 55788877754
No 40
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=94.47 E-value=0.24 Score=32.58 Aligned_cols=69 Identities=6% Similarity=0.104 Sum_probs=49.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHH---h-CCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEK---L-HADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~---~-~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+++...++..|++++..+..- ...+.+.+++++ . .++.+|.+......+.. -+.-.+++||+-||.
T Consensus 18 ~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 89 (159)
T 3rg8_A 18 AEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG--------FVDGFVKGATIACPP 89 (159)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHH--------HHHHHSSSCEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHH--------HHHhccCCCEEEeeC
Confidence 4455566678899999887775 566666666543 2 58999999887666654 245578999999996
Q ss_pred CC
Q 040308 163 KG 164 (167)
Q Consensus 163 ~~ 164 (167)
..
T Consensus 90 ~~ 91 (159)
T 3rg8_A 90 PS 91 (159)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 41
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=94.41 E-value=0.28 Score=32.40 Aligned_cols=69 Identities=10% Similarity=0.172 Sum_probs=49.6
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHH---HhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVE---KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++...++..|++++..+..- ...+.+.++++ +.+++.+|.+......+.. -+.-.+++||+-||..
T Consensus 19 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~~ 90 (163)
T 3ors_A 19 MQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPG--------MVASLTTLPVIGVPIE 90 (163)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--------HHHhccCCCEEEeeCC
Confidence 4455566678899999888775 56666666655 4568999999887666654 2445788999999865
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 91 ~ 91 (163)
T 3ors_A 91 T 91 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 42
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=94.34 E-value=0.29 Score=32.69 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=48.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHH---HHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCEL---VEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++...++..|++++..+..- ...+.+.++ +++.+++.+|.+......+.. -+.-.+++||+-||..
T Consensus 23 ~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~~ 94 (174)
T 3lp6_A 23 MADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPG--------MVAAATPLPVIGVPVP 94 (174)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHH--------HHHhccCCCEEEeeCC
Confidence 3455566678899999888764 445555555 556789999999887666654 2445788999999865
No 43
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=94.31 E-value=0.28 Score=32.92 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=50.0
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHH---hCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEK---LHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~---~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++...++..|++++..+..- ...+.+.+++++ .+++.+|.+......+.. -+.-.+++||+-||..
T Consensus 37 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~~ 108 (182)
T 1u11_A 37 MRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPG--------MCAAWTRLPVLGVPVE 108 (182)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHH--------HHHhccCCCEEEeeCC
Confidence 4455566677899999888765 566777777664 458999999887666654 3455788999999965
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 109 ~ 109 (182)
T 1u11_A 109 S 109 (182)
T ss_dssp C
T ss_pred C
Confidence 4
No 44
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=93.96 E-value=0.33 Score=32.67 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=49.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHH---HhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIG-DAKEKVCELVE---KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+++...++..|++++..+..- ...+.+.++++ +.+++.+|.++.....+... +.-.+++||+-||..
T Consensus 29 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--------vA~~t~~PVIgVP~~ 100 (183)
T 1o4v_A 29 MKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM--------VASITHLPVIGVPVK 100 (183)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--------HHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH--------HHhccCCCEEEeeCC
Confidence 3455566677899999888765 55666666655 45689999998876666542 445688999999975
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 101 ~ 101 (183)
T 1o4v_A 101 T 101 (183)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=93.82 E-value=0.67 Score=32.13 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=58.4
Q ss_pred CCcEEEEeecC-----ChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHH
Q 040308 4 NLGCVIVAVDG-----GEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEA 78 (167)
Q Consensus 4 ~~~~ILv~id~-----s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (167)
.|++|||-++. .+.+..++..|..|+... +.+++++-+-+...
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~---g~~v~av~~G~~~~----------------------------- 49 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANEL---NCQLEAVVAGTGLK----------------------------- 49 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHH---TCCEEEEEEESCCT-----------------------------
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhc---CCeEEEEEECCCHH-----------------------------
Confidence 36789999975 477999999999999998 78999887765310
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEEec-----C---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 79 HQGRITQAIIDHALKICSEKNVNVKSEVVIG-----D---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g-----~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+.. +.+..+|..--..+... + .++.|...+++.++|+|++|...
T Consensus 50 ---~~~--------~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 50 ---EIE--------KQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp ---TTH--------HHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred ---HHH--------HHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 001 11223565432333221 1 35677788888999999999753
No 46
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=93.54 E-value=0.48 Score=34.99 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=59.6
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRIT 84 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (167)
+.+++|++.+..+|...+..+..+.... +.++.++|+-......
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~---~~~i~vv~vDtg~~~~--------------------------------- 89 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPG---KLPFPVMHVDTRWKFQ--------------------------------- 89 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTS---CCSSCEEEECCSCCCH---------------------------------
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhcccc---CCCEEEEEEECCCCCH---------------------------------
Confidence 5689999999999999999888876654 4577888885532110
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEe-----cC-hH-------------hHHHHHHHHhCCCEEEEeecCC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVI-----GD-AK-------------EKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~-----g~-~~-------------~~I~~~a~~~~~dliV~g~~~~ 134 (167)
+..+.+.+.+.++|+++...... |. +. ..+.+.+++.++|.++.|.+.-
T Consensus 90 -et~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 90 -EMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp -HHHHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred -HHHHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 12233344556677776554211 21 10 2355667777999999998753
No 47
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=92.51 E-value=2.1 Score=30.60 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=52.5
Q ss_pred eecCChhHHHHHHHHHHhccccCCCCC--eEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 040308 11 AVDGGEESMDALRWAIDNLKLRSPAPG--SFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAII 88 (167)
Q Consensus 11 ~id~s~~s~~al~~a~~la~~~~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (167)
+.-.++.+..+++.|.+|+... +. +++++.+-++. .+..+
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~---g~~~~V~av~~G~~~-----------------------------------~~~~l 73 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESS---DTDVEVVVVSVGPDR-----------------------------------VDESL 73 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHC---SSCCEEEEEEESCGG-----------------------------------GHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHhc---CCCceEEEEEeCchh-----------------------------------HHHHH
Confidence 3345688999999999998877 56 89988776521 11122
Q ss_pred HHHHHHhhhcCCcEEEEEEe----c-C---hHhHHHHHHHHhCCCEEEEeecCCC
Q 040308 89 DHALKICSEKNVNVKSEVVI----G-D---AKEKVCELVEKLHADLLVMGSHTFG 135 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~----g-~---~~~~I~~~a~~~~~dliV~g~~~~~ 135 (167)
+.+ -..|..--.++.. + + .++.|...+++.++|+|++|....+
T Consensus 74 r~a----la~GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 74 RKC----LAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp HHH----HHTTCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred HHH----HhcCCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 222 1235443333322 1 1 2456677788889999999987654
No 48
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=91.55 E-value=1.4 Score=34.93 Aligned_cols=121 Identities=10% Similarity=-0.027 Sum_probs=75.5
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHAL 92 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
|..-....+|..|+..+. . +..|+.++++++....... . -........+-+..+.
T Consensus 13 DLRl~DN~AL~~A~~~~~-~---g~~vl~vfi~dp~~~~~~~---------------~------~~~r~~Fl~~sL~~L~ 67 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-Q---GIALIPVFIFDGESAGTKN---------------V------GYNRMRFLLDSLQDID 67 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-T---TCBCCEEEEECSSSSCSTT---------------C------CHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHhCC-C---CCCEEEEEecChhhhccCC---------------C------CHHHHHHHHHHHHHHH
Confidence 455556667777776554 4 5589999999865432110 0 0112234455566667
Q ss_pred HHhhhc---CCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 93 KICSEK---NVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 93 ~~~~~~---~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+.+.+. |+.. .+..|++.+.|.+++++.+++-|+.... .+.... -....+.+.+....|++..+..
T Consensus 68 ~~L~~~~~~G~~L--~v~~G~~~~vl~~L~~~~~a~~V~~n~~-~~~~~~-~RD~~v~~~l~~~gi~~~~~~~ 136 (538)
T 3tvs_A 68 DQLQAATDGRGRL--LVFEGEPAYIFRRLHEQVRLHRICIEQD-CEPIWN-ERDESIRSLCRELNIDFVEKVS 136 (538)
T ss_dssp HHGGGSCSSSSCC--EEEESCHHHHHHHHHHHHCEEEECEECC-CCGGGH-HHHHHHHHHHHHSSCCCCEECC
T ss_pred HHHHHhhcCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEccC-CCHHHH-HHHHHHHHHHHhCCceEEEecC
Confidence 777777 7665 4568999999999999999999987543 343332 1223445566666777766553
No 49
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=91.44 E-value=3 Score=30.23 Aligned_cols=122 Identities=13% Similarity=0.110 Sum_probs=78.8
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQ 85 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (167)
-+|||++.........+++|..+.... +-++++++.+..... ...+
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~----G~ltv~~i~p~~~~~------------------------------~l~~ 66 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPK----GSVKLLGLAGNTDKE------------------------------NLLS 66 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTT----CEEEEEECC---CTT------------------------------CHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCc----eeEEEEEEccCCCcc------------------------------HHHH
Confidence 369999988878888999999988866 789999997643211 0011
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEe-cChHhHHHHHHHHh-----CCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE
Q 040308 86 AIIDHALKICSEKNVNVKSEVVI-GDAKEKVCELVEKL-----HADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~-----~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli 159 (167)
+ ++.+.+.+++.++..-+.+.. .++...+...++.+ .+.-|++|..... -..--+..++.. +++....|++
T Consensus 67 q-l~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~-e~~~~y~~~i~~-~~~~~~nVli 143 (294)
T 3g40_A 67 Q-LPSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENR-DRDEEIREIIRK-ASMYRMGVLL 143 (294)
T ss_dssp H-HHHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSG-GGHHHHHHHHHH-HHHTTCEEEE
T ss_pred H-HHHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCCh-hhhHHHHHHHHH-HHHhCceEEE
Confidence 1 256678888899887777655 47888888877765 4678899976433 222123344443 3455899999
Q ss_pred EcCCC
Q 040308 160 VKGKG 164 (167)
Q Consensus 160 v~~~~ 164 (167)
+....
T Consensus 144 l~~~~ 148 (294)
T 3g40_A 144 FSKHP 148 (294)
T ss_dssp EECCT
T ss_pred EecCC
Confidence 97544
No 50
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=91.00 E-value=2.4 Score=29.33 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=52.8
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
|...+||.|-+.++.....++-.+.. .... +.++. -|+...... .
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~~-~~~~---~~~I~--~Vis~~~~a-------------------~---------- 49 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAFS-TEES---SVVIS--CVISNNAEA-------------------R---------- 49 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHTC-CC-C---SEEEE--EEEESCTTC-------------------T----------
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHHH-cCCC---CcEEE--EEEeCCcch-------------------H----------
Confidence 34567999999999888777666642 1222 34444 444422100 0
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC
Q 040308 82 RITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
. .+.+.++|+++...-...-..+++.+..++.++|++|+...+
T Consensus 50 --~-------l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 50 --G-------LLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp --H-------HHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred --H-------HHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 0 245667888875432211123788999999999999998654
No 51
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=90.46 E-value=2.3 Score=32.61 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=34.1
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccc-cCCCCCeEEEEEEeCC
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKL-RSPAPGSFIVLHVQPP 47 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~-~~~~~~~l~~l~v~~~ 47 (167)
-++|+|++.+..+|..++..+..+... . +.+++++||-..
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~---g~~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENP---GVALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTST---TCEEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcC---CCeEEEEEEECC
Confidence 478999999999999999888887766 5 679999999653
No 52
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=90.12 E-value=1.4 Score=26.44 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=37.4
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCC----CccceecccchhHHHHhcCCCCEEEEcCCCC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTF----GPIKRMFLGSVSNYCANHAQCPVVVVKGKGT 165 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~----~~~~~~~~gs~~~~i~~~~~~pVliv~~~~~ 165 (167)
...+.|.+++++.+++.||+|-+.. ........-.+++.+-.. +.||..+-..-+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERlT 96 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 3578899999999999999995422 111111233456777666 899998876544
No 53
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=90.02 E-value=0.87 Score=30.49 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=62.2
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
|.++|++.+.++..+..+++..-.|.+ . +.+++++-......+- ..+
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L~~-~---g~~V~vv~T~~A~~fi-----------------~~~------------ 50 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIELKS-K---FDEVNVIASTNGRKFI-----------------NGE------------ 50 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHTT-T---CSEEEEEECTGGGGGS-----------------CHH------------
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-C---CCEEEEEECcCHHHHh-----------------hHH------------
Confidence 448999999999998888887666554 4 5777766432211110 000
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCcccee---cccchhHHHHhcCCCCEEEE
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRM---FLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~---~~gs~~~~i~~~~~~pVliv 160 (167)
. ++.. . + ++... ..+..-..+..++ .+|++|+-.-..+.+.++ +-.+....++....+||+++
T Consensus 51 ---~---l~~l-~--~-~v~~~--~~~~~~~hi~l~~--~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~ 116 (175)
T 3qjg_A 51 ---I---LKQF-C--D-NYYDE--FEDPFLNHVDIAN--KHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIF 116 (175)
T ss_dssp ---H---HHHH-C--S-CEECT--TTCTTCCHHHHHH--TCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEE
T ss_pred ---H---HHHh-c--C-CEEec--CCCCccccccccc--hhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEE
Confidence 0 1111 1 2 21111 1112233555666 899999986554444332 22334445666779999999
Q ss_pred cC
Q 040308 161 KG 162 (167)
Q Consensus 161 ~~ 162 (167)
|.
T Consensus 117 Pa 118 (175)
T 3qjg_A 117 PN 118 (175)
T ss_dssp EC
T ss_pred ec
Confidence 83
No 54
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=89.93 E-value=1.3 Score=31.52 Aligned_cols=31 Identities=13% Similarity=-0.071 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 14 GGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 14 ~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
.++.+..+++.|.+|.... . ..+++++.+-+
T Consensus 35 lnp~d~~Ale~A~~Lke~g-~-~~~V~av~~G~ 65 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEKG-Q-AEEIIAVSIGV 65 (252)
T ss_dssp ECHHHHHHHHHHHHHHTTT-S-CSEEEEEEEES
T ss_pred CCHHHHHHHHHHHHHHhcC-C-CceEEEEEeCC
Confidence 4688899999999997653 0 12898888776
No 55
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=88.65 E-value=1.5 Score=31.25 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKI 94 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (167)
++.+..+++.|.+|.... . ..+++++.+-++. .+..++.+..
T Consensus 39 np~d~~Ale~A~~Lke~g-~-~~~V~av~~G~~~-----------------------------------a~~~lr~ala- 80 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEKK-L-VKEVIAVSCGPAQ-----------------------------------CQETIRTALA- 80 (255)
T ss_dssp CHHHHHHHHHHHHHHHTT-S-CSEEEEEEEESTT-----------------------------------HHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHhcC-C-CceEEEEEeCChh-----------------------------------HHHHHHHHHh-
Confidence 367789999999987653 0 1289888877632 1122222211
Q ss_pred hhhcCCcEEEEEE-e-----c-C---hHhHHHHHHHHhCCCEEEEeecCCC
Q 040308 95 CSEKNVNVKSEVV-I-----G-D---AKEKVCELVEKLHADLLVMGSHTFG 135 (167)
Q Consensus 95 ~~~~~~~~~~~v~-~-----g-~---~~~~I~~~a~~~~~dliV~g~~~~~ 135 (167)
.|..--.++. . + + .++.|...+++.++|+|++|....+
T Consensus 81 ---~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 81 ---MGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp ---HTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred ---cCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 2544333333 1 2 2 2456667788889999999987654
No 56
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=88.62 E-value=4.5 Score=27.94 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=54.8
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQ 80 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
|+....||.|-+.++.....++-.+..-- . +.++.++-.-.+.. .
T Consensus 1 ~~~~~~riavl~SG~Gsnl~all~~~~~~--~---~~eI~~Vis~~~~a-~----------------------------- 45 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGTNLQAIIGAIQKG--L---AIEIRAVISNRADA-Y----------------------------- 45 (215)
T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHHHTT--C---SEEEEEEEESCTTC-H-----------------------------
T ss_pred CCCCCcEEEEEEeCCcHHHHHHHHHHHcC--C---CCEEEEEEeCCcch-H-----------------------------
Confidence 55666799999999988888877765532 4 55665554422110 0
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEe--c---ChHhHHHHHHHHhCCCEEEEeecC
Q 040308 81 GRITQAIIDHALKICSEKNVNVKSEVVI--G---DAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--g---~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
..+.+++.|+++...-.. . ...+++.+..++.++|++|+...+
T Consensus 46 ----------~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 46 ----------GLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp ----------HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred ----------HHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 024566778887543211 1 124678899999999999997654
No 57
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=88.05 E-value=3.3 Score=32.81 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=74.4
Q ss_pred CCcEEEEee--cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 4 NLGCVIVAV--DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 4 ~~~~ILv~i--d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
|-+.+||=. |..-....+|..|+. . +..|+.|+|+++....... .....|.. .. -....
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~----~---~~~vlpvfi~dp~~~~~~~--~~~~~g~~----~~------g~~r~ 63 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASK----G---SEFMYPVFVIDPHYMESDP--SAFSPGSS----RA------GVNRI 63 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHT----T---CSCEEEEEEECHHHHSCCT--TSSSSBCS----SC------BHHHH
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHh----c---CCCEEEEEEeChhhhcccc--cccccccc----cC------CHHHH
Confidence 334444444 666677778888764 3 4689999999864322100 00000000 00 01122
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 82 RITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
....+-+..+.+.+++.|+.. .+..|++.+.|.+++++.+++-|+.... ..+.... ....+...+....+++..+.
T Consensus 64 ~Fl~~sL~~L~~~L~~~G~~L--~v~~G~~~~vl~~L~~~~~~~~V~~n~~-~~p~~~~-RD~~v~~~l~~~gI~~~~~~ 139 (537)
T 3fy4_A 64 RFLLESLKDLDSSLKKLGSRL--LVFKGEPGEVLVRCLQEWKVKRLCFEYD-TDPYYQA-LDVKVKDYASSTGVEVFSPV 139 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--EEEESCHHHHHHHHHTTSCEEEEEECCC-CSHHHHH-HHHHHHHHHHHTTCEEECCC
T ss_pred HHHHHHHHHHHHHHHHcCCce--EEEECCHHHHHHHHHHHcCCCEEEEecc-ccHHHHH-HHHHHHHHHHHcCCeEEEec
Confidence 334445566666667777665 4567999999999999999999888754 2332211 12233444555556655443
No 58
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=88.04 E-value=5.2 Score=31.13 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=73.0
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHAL 92 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
|..-....+|..|... ...+..++++++....... . -........+-++.+.
T Consensus 12 DLRl~Dn~aL~~A~~~-------~~~v~~vfi~dp~~~~~~~-~--------------------~~~r~~fl~~sL~~L~ 63 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQ-------SAQLIGLFCLDPQILQSAD-M--------------------APARVAYLQGCLQELQ 63 (484)
T ss_dssp CCCSSSCHHHHHHHHH-------CSCEEEEEEECHHHHTCTT-C--------------------CHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhc-------CCCEEEEEEEcchhhcCCC-C--------------------CHHHHHHHHHHHHHHH
Confidence 5555566677777653 2368899998864321000 0 0112233445556666
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+.+++.|+++ .+..|++.+.|.+++++.+++-|+.... ..+.... .-..+.+.+...+|++..+..
T Consensus 64 ~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~-rd~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 64 QRYQQAGSRL--LLLQGDPQHLIPQLAQQLQAEAVYWNQD-IEPYGRD-RDGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp HHHHHHTSCE--EEEESCHHHHHHHHHHHTTCSEEEEECC-CSHHHHH-HHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEecc-CChhHHH-HHHHHHHHHHHcCcEEEEecC
Confidence 6667778775 4467999999999999999999988654 3333322 233444555666788877764
No 59
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=86.92 E-value=5.8 Score=27.31 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=54.5
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRIT 84 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (167)
|+||.|-+.++..+..++-.+.. .... +++|.++-.-.+.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~-~~~l---~~eI~~Visn~~~------------------------------------ 41 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQK-AGQL---PCEVALLITDKPG------------------------------------ 41 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHH-TTCC---SSEEEEEEESCSS------------------------------------
T ss_pred CCEEEEEEeCCchHHHHHHHHHH-cCCC---CcEEEEEEECCCC------------------------------------
Confidence 57899999999888877777654 2334 4666665442211
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEe--cC---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVI--GD---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
....+.+.+.|+++...-.. .+ ..+++++..++.++|++|+...+
T Consensus 42 ----a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 42 ----AKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp ----SHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred ----cHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 12345667788887543211 11 14678899999999999997654
No 60
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=86.28 E-value=6.7 Score=29.94 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=70.0
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHAL 92 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
|..-....+|..|.. . + .+..++++++.... . -........+-++.+.
T Consensus 11 DlRl~Dn~aL~~A~~----~---~-~v~~vfi~d~~~~~-----------------------~-~~~r~~fl~~sL~~l~ 58 (420)
T 2j07_A 11 DLRLHDHPALLEALA----R---G-PVVGLVVLDPNNLK-----------------------T-TPRRRAWFLENVRALR 58 (420)
T ss_dssp CCCSTTCHHHHHHHT----T---S-CEEEEEEECHHHHS-----------------------S-CHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHh----C---C-CEEEEEEECCcccc-----------------------C-CHHHHHHHHHHHHHHH
Confidence 555556667776654 3 4 78888988853211 0 1122234455566677
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.+++.|+++ .+..|++.+.|.+++++.+++.|+.... ..+..... -+.|-..++|++..+...
T Consensus 59 ~~L~~~g~~l--~~~~g~~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~r----d~~v~~~l~i~~~~~~~~ 122 (420)
T 2j07_A 59 EAYRARGGAL--WVLEGLPWEKVPEAARRLKAKAVYALTS-HTPYGRYR----DGRVREALPVPLHLLPAP 122 (420)
T ss_dssp HHHHHTTCCE--EEEESCHHHHHHHHHHHTTCSEEEEECC-CSHHHHHH----HHHHHHHCSSCEEEECCC
T ss_pred HHHHHCCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEecc-cChhHHHH----HHHHHHHcCCeEEEeCCC
Confidence 7777778775 4467999999999999999999988654 33333221 123333337888777653
No 61
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=86.23 E-value=2.4 Score=32.49 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHH---HHhCC-CEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 87 IIDHALKICSEKNVNVKSEVVIG-DAKEKVCELV---EKLHA-DLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a---~~~~~-dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..+++...++..|++++..+..- ...+.+.+++ ++.++ +.+|.++.....+.. -+.-.+++||+-||
T Consensus 280 ~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpg--------vva~~t~~PVIgvP 351 (425)
T 2h31_A 280 HCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGP--------VMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHH--------HHHHHCSSCEEECC
T ss_pred HHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHh--------HHhccCCCCEEEee
Confidence 35566677778899998888764 4455555554 44567 688888877665554 24457889999999
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 74
No 62
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=86.06 E-value=5.9 Score=30.50 Aligned_cols=118 Identities=11% Similarity=0.111 Sum_probs=72.9
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHAL 92 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
|..-....+|.+|+. . +..|+.++++++........ .-........+-++.+.
T Consensus 10 DLRl~DN~aL~~A~~----~---~~~v~~vfi~dp~~~~~~~~--------------------~~~~r~~Fl~~sL~~L~ 62 (440)
T 2e0i_A 10 DLRLEDNTGLNYALS----E---CDRVIPVFIADPRQLINNPY--------------------KSEFAVSFMINSLLELD 62 (440)
T ss_dssp CCCSSSCHHHHHHHH----H---SSEEEEEEEECHHHHSSCTT--------------------CCHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHh----c---CCCEEEEEEeChhhhccCCc--------------------CCHHHHHHHHHHHHHHH
Confidence 455556667777776 3 46899999998643211000 00122234455566667
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.+++.|+++ .+..|++.+.|.++++ +++.|+.... ..+.... ......+.+...+|++..+...
T Consensus 63 ~~L~~~G~~L--~v~~g~~~~~l~~l~~--~~~~v~~~~~-~~~~~~~-rd~~v~~~l~~~gi~~~~~~~~ 127 (440)
T 2e0i_A 63 DELRKKGSRL--NVFFGEAEKVVSRFFN--KVDAIYVNED-YTPFSIS-RDEKIRKVCEENGIEFKAYEDY 127 (440)
T ss_dssp HHHHTTTCCC--EEEESCHHHHHHHHCT--TCSEEEEECC-CSHHHHH-HHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHcCCeE--EEEECCHHHHHHHHHc--CCCEEEEecc-cChHHHH-HHHHHHHHHHHcCceEEEecCC
Confidence 7777778765 3467999999999999 9998888644 3333322 2334445566667888777654
No 63
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=85.91 E-value=6.2 Score=26.70 Aligned_cols=38 Identities=16% Similarity=-0.059 Sum_probs=28.0
Q ss_pred CCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 3 GNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 3 ~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
|.+++++|++.+..+|..++..+. .. +.+++.+|+...
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~----~~---g~~v~~~~v~~~ 41 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILK----KL---GYNPHLITINFG 41 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHH----HT---TEEEEEEEEECS
T ss_pred ccCCeEEEEEECcHHHHHHHHHHH----Hc---CCCeEEEEEeCC
Confidence 445899999999999987775543 35 678999998763
No 64
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=84.93 E-value=9.7 Score=28.07 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+.++.+.+.+.. .+++-.-+-..+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 91 ~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 167 (332)
T 2r8w_A 91 RAIEAAATILRG-RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYN 167 (332)
T ss_dssp HHHHHHHHHHTT-SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 334444444332 24433322222444444 4668888999998887654333221112233567888899999975
No 65
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=84.49 E-value=7.5 Score=26.41 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=27.0
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
++|+|++.+..+|...+..+..+. .++.++|+-..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~-------~~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR-------PDIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS-------TTCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC-------CCCeEEEeeCC
Confidence 489999999999998887776652 35677887663
No 66
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=83.42 E-value=4.2 Score=31.60 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=59.4
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHAL 92 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
|..-....+|.+|+.. .. + .|+.++++++...... ..-........+-++.+.
T Consensus 10 DLRl~DN~aL~~A~~~--~~---~-~v~~vfi~dp~~~~~~---------------------~~~~~r~~fl~~sL~~L~ 62 (471)
T 1dnp_A 10 DLRLHDNLALAAACRN--SS---A-RVLALYIATPRQWATH---------------------NMSPRQAELINAQLNGLQ 62 (471)
T ss_dssp CCCSTTCHHHHHHSSS--TT---S-EEEEEEEECHHHHHHT---------------------TCCHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHhC--CC---C-CEEEEEEECchhhccC---------------------CCCHHHHHHHHHHHHHHH
Confidence 4444556677777653 13 4 8999999985321100 001122234455566677
Q ss_pred HHhhhcCCcEEEEEE--ecChHhHHHHHHHHhCCCEEEEeec
Q 040308 93 KICSEKNVNVKSEVV--IGDAKEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~--~g~~~~~I~~~a~~~~~dliV~g~~ 132 (167)
+.+++.|+++..... .|++.+.|.+++++.+++-|+....
T Consensus 63 ~~L~~~G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 63 IALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHTTCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHCCCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 777777877644322 6899999999999999999888644
No 67
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=83.16 E-value=9.2 Score=26.38 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=54.6
Q ss_pred CCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 040308 3 GNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGR 82 (167)
Q Consensus 3 ~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (167)
+++.||.|-+.++..+..++-.+.. ... +.++.++ +..+..
T Consensus 10 ~~~~ri~vl~SG~gsnl~all~~~~--~~~---~~eI~~V--is~~~a-------------------------------- 50 (215)
T 3da8_A 10 SAPARLVVLASGTGSLLRSLLDAAV--GDY---PARVVAV--GVDREC-------------------------------- 50 (215)
T ss_dssp CSSEEEEEEESSCCHHHHHHHHHSS--TTC---SEEEEEE--EESSCC--------------------------------
T ss_pred CCCcEEEEEEeCChHHHHHHHHHHh--ccC---CCeEEEE--EeCCch--------------------------------
Confidence 3457899999999888777766652 234 5666555 332210
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEec--C---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 83 ITQAIIDHALKICSEKNVNVKSEVVIG--D---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
...+.+.++|+++...-... + ..+++.+..++.++|++|+...+
T Consensus 51 -------~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 51 -------RAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp -------HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred -------HHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 01355677888875542111 1 24678889999999999997654
No 68
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=82.71 E-value=3.9 Score=26.53 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecC-hHhHHHHHHHHhCCCEEEEeecCCC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGD-AKEKVCELVEKLHADLLVMGSHTFG 135 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dliV~g~~~~~ 135 (167)
+++.+.+.+.+...|++++..-.... ....+..... ++|.||+|+....
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCC
Confidence 34444455555556776655433333 4566666666 8999999987654
No 69
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=82.63 E-value=2.1 Score=26.10 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCCcEEEEE-EecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 89 DHALKICSEKNVNVKSEV-VIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v-~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+..++.+.+.|++++..- -.+.. .+... ++|+|++|..=+..+. .........++||.+++.
T Consensus 24 ~km~~~a~~~gi~v~i~a~~~~~~----~~~~~--~~DvvLLgPQV~y~~~------~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 24 NAINEGANLTEVRVIANSGAYGAH----YDIMG--VYDLIILAPQVRSYYR------EMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHTCSEEEEEEETTSC----TTTGG--GCSEEEECGGGGGGHH------HHHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHCCCceEEEEcchHHH----Hhhcc--CCCEEEEChHHHHHHH------HHHHHhhhcCCcEEEeCH
Confidence 344445555677776543 22332 22334 7999999976443333 234566666899999874
No 70
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=81.99 E-value=3.9 Score=26.55 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFG 135 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 135 (167)
++.+.+.+.+...|++++..-........+..... ++|.||+|++...
T Consensus 16 ~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 16 RLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 34444445555567776554343444555655555 7999999987653
No 71
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=81.88 E-value=15 Score=27.99 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=28.9
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
..++++|++.+--+|..++.++.+ . +.+++.+|+...
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e----~---G~eV~av~vd~g 40 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKE----Q---GYDVIAYLANIG 40 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHH----T---TEEEEEEEEESS
T ss_pred CCCeEEEEEcChHHHHHHHHHHHH----c---CCEEEEEEEECC
Confidence 457999999999999888777755 3 468999998764
No 72
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=81.40 E-value=17 Score=28.19 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 3 GNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 3 ~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
...++|+|++.+--+|.-++.++.+ . +.+++.+|+...
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e----~---G~eViavtvd~G 45 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQ----K---GAVPYAYTANLG 45 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHH----T---TCEEEEEEEECC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHH----c---CCEEEEEEEEcC
Confidence 3468999999999999988887755 3 469999998764
No 73
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=79.91 E-value=20 Score=28.18 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=77.5
Q ss_pred cEEEEee--cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 6 GCVIVAV--DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 6 ~~ILv~i--d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
+.+|+=+ |..-....+|..|+. . +..+..++++++.........+ . ... -......
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~----~---~~~v~~vfi~dp~~~~~~~~~~-----~------~~~----~~~r~~F 97 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWS----S---SDTILPVYCLDPRLFHTTHFFN-----F------PKT----GALRGGF 97 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----T---CSEEEEEEEECGGGGSBCTTTC-----C------BSS----CHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHh----c---CCcEEEEEEECchhhccccccc-----C------CCC----CHHHHHH
Confidence 3445544 555566777877765 2 4578999999875332100000 0 000 0112233
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCC--CCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQ--CPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~--~pVliv~ 161 (167)
..+-++.+.+.+++.|+++ .+..|++.+.|.+++++.+++-|+.-.. ..+..... -....+.+.... |++..+.
T Consensus 98 l~~sL~~L~~~L~~~G~~L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~r-d~~v~~~l~~~gv~i~~~~~~ 173 (525)
T 2j4d_A 98 LMECLVDLRKNLMKRGLNL--LIRSGKPEEILPSLAKDFGARTVFAHKE-TCSEEVDV-ERLVNQGLKRVGNSTKLELIW 173 (525)
T ss_dssp HHHHHHHHHHHHHHTTCCC--EEEESCHHHHHHHHHHHHTCSEEEEECC-CSHHHHHH-HHHHHHHHHTTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCeE--EEEeCCHHHHHHHHHHHcCCCEEEEecc-CCHHHHHH-HHHHHHHHHhcCCceEEEEec
Confidence 4455666666677778765 3467999999999999999999988744 33333322 233344555555 7777766
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 174 ~~ 175 (525)
T 2j4d_A 174 GS 175 (525)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 74
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=79.81 E-value=2.1 Score=27.44 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=36.0
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCC----CccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTF----GPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~----~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
...+.|.+++++.+++.||+|-+.. ........-.+++.+-...++||..+-..
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3478999999999999999996521 11111112345566666668999988653
No 75
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=79.55 E-value=14 Score=26.18 Aligned_cols=72 Identities=15% Similarity=0.026 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+.+.+.+.+.+.|+.+......++... ..++.+...++|-||+.......... .. ..+...++||+++-..
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~-~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN-----VV-KEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH-----HH-HHHHTTTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH-----HH-HHHHHCCCeEEEECCc
Confidence 3455556666777877765544445433 45566666799999987654433222 22 3456678999998654
No 76
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=79.11 E-value=5.2 Score=27.63 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=21.8
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEE
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHV 44 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v 44 (167)
|..+..+++|+.|+... ..+++.+-. . +..+..+++
T Consensus 1 ~~~~~~~livAlD~~~~-~~a~~~~~~----~---~~~~~~ikv 36 (221)
T 3exr_A 1 MTKQLPNLQVALDHSNL-KGAITAAVS----V---GNEVDVIEA 36 (221)
T ss_dssp --CCCCEEEEEECCSSH-HHHHHHHHH----H---GGGCSEEEE
T ss_pred CCCCCCCEEEEeCCCCH-HHHHHHHHh----h---CCCceEEEE
Confidence 56677899999999854 334554444 3 334555666
No 77
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=79.04 E-value=7.8 Score=22.92 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHh
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKL 122 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~ 122 (167)
..++++....+..|..+.+...-++..+.+.++.++.
T Consensus 88 nrleefsrevrrrgfevrtvtspddfkkslerlirev 124 (134)
T 2l69_A 88 NRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHHh
Confidence 3456666667778888777554456677777776653
No 78
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=78.97 E-value=7.5 Score=28.11 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh-cCCCCEEEEcCCC
Q 040308 87 IIDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN-HAQCPVVVVKGKG 164 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~-~~~~pVliv~~~~ 164 (167)
..+++...+...++.++...... ..+.++.+.+.+ ++|.||+.... +.+. .+++.+.. ..++|+.++|...
T Consensus 27 ~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GGD-GTl~-----~v~~~l~~~~~~~~l~iiP~Gt 99 (304)
T 3s40_A 27 NLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGGD-GTVF-----ECTNGLAPLEIRPTLAIIPGGT 99 (304)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEECH-HHHH-----HHHHHHTTCSSCCEEEEEECSS
T ss_pred HHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEccc-hHHH-----HHHHHHhhCCCCCcEEEecCCc
Confidence 34455666667788777665443 445556655543 78877665332 2232 24454544 2679999999765
Q ss_pred C
Q 040308 165 T 165 (167)
Q Consensus 165 ~ 165 (167)
.
T Consensus 100 ~ 100 (304)
T 3s40_A 100 C 100 (304)
T ss_dssp C
T ss_pred H
Confidence 3
No 79
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=78.97 E-value=7.8 Score=22.91 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=27.9
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEE
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVV 160 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv 160 (167)
.++.++..++..+|++++...-.+...+. ...+.+-.. ..+||+++
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 44555666777899999987643122221 244545443 46999988
No 80
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=78.92 E-value=6.9 Score=28.70 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHH-hcCCCCEEEEcCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCA-NHAQCPVVVVKGK 163 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~-~~~~~pVliv~~~ 163 (167)
+..+++.+.+...++.+....... ..+..+...+...++|+||+.... +.+. .+++.++ ...++|+.++|..
T Consensus 42 ~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGD-GTv~-----~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 42 RELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGD-GTLN-----EVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH-HHHH-----HHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCc-hHHH-----HHHHHHHhCCCCCcEEEecCC
Confidence 344556667777787766654443 344555555545578877664332 2222 3445553 3467999999975
Q ss_pred CC
Q 040308 164 GT 165 (167)
Q Consensus 164 ~~ 165 (167)
.-
T Consensus 116 T~ 117 (337)
T 2qv7_A 116 TV 117 (337)
T ss_dssp SC
T ss_pred cH
Confidence 43
No 81
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=78.01 E-value=2.3 Score=27.09 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=25.1
Q ss_pred CCCCCcEEEEeecCChhH----HHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 1 MSGNLGCVIVAVDGGEES----MDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s----~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
|++.|+++++.+..+|+. ..++++|..++.. +.++.++..-+
T Consensus 1 ~~~~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~----~~~v~Vff~~D 46 (136)
T 2hy5_B 1 MSEVVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF----DQDVCVLFLDD 46 (136)
T ss_dssp ----CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG----CCEEEEEECGG
T ss_pred CccchhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC----CCCEEEEEEhH
Confidence 667789999999887764 5566666655543 34665555443
No 82
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=77.57 E-value=15 Score=25.24 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=51.9
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQ 85 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (167)
+||.|-+.++.....++-.+.. .... +.++.++ +...... . .
T Consensus 8 ~ri~vl~SG~gsnl~all~~~~-~~~l---~~~I~~V--isn~~~a-------------------~------------~- 49 (209)
T 4ds3_A 8 NRVVIFISGGGSNMEALIRAAQ-APGF---PAEIVAV--FSDKAEA-------------------G------------G- 49 (209)
T ss_dssp EEEEEEESSCCHHHHHHHHHHT-STTC---SEEEEEE--EESCTTC-------------------T------------H-
T ss_pred ccEEEEEECCcHHHHHHHHHHH-cCCC---CcEEEEE--EECCccc-------------------H------------H-
Confidence 5899999999888777666653 2223 3455444 4321100 0 0
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEec--C---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIG--D---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.++++|+++...-... + ..+++.+..++.++|++|+...+
T Consensus 50 ------l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 50 ------LAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp ------HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred ------HHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 145677888875432211 1 23688899999999999998654
No 83
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=77.43 E-value=15 Score=25.68 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEec--ChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIG--DAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g--~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
..+.+.+.+.+.+.|+.+......+ ++. ...++.+...++|-||+.......... ..+. +. ..+||+++
T Consensus 21 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~~-~~-~~iPvV~~ 93 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH-----NLKS-WV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-----THHH-HT-TTSCEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-----HHHH-Hc-CCCCEEEe
Confidence 3445555666667787776655554 533 345555666799999998654432222 2333 44 78999998
Q ss_pred c
Q 040308 161 K 161 (167)
Q Consensus 161 ~ 161 (167)
-
T Consensus 94 ~ 94 (304)
T 3o1i_D 94 V 94 (304)
T ss_dssp S
T ss_pred c
Confidence 3
No 84
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=77.10 E-value=17 Score=25.66 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=43.0
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEc
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVK 161 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~ 161 (167)
...++..|.++... -..-|.+++++.+++.++|+|.+.......... +..+.+.+-+. .++||++--
T Consensus 144 a~~L~~~G~~Vi~L-G~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vGG 211 (258)
T 2i2x_B 144 TALLRANGYNVVDL-GRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACGG 211 (258)
T ss_dssp HHHHHHTTCEEEEE-EEECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEES
T ss_pred HHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEEC
Confidence 34556678776443 223689999999999999999998765443332 23344444333 248887754
No 85
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=76.85 E-value=17 Score=26.41 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=52.1
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
..+||.|-+.++..+..++-.+.. .... ++++.++-.-.+.
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~-~g~l---~~~I~~Visn~~~----------------------------------- 144 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWH-SDEL---DCDIACVISNHQD----------------------------------- 144 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHH-TTCS---CSEEEEEEESSST-----------------------------------
T ss_pred CCcEEEEEEeCCchhHHHHHHHHH-CCCC---CcEEEEEEECcHH-----------------------------------
Confidence 356888888888877777666644 2233 4555554332211
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe-c-C--hHhHHHHHHHHhCCCEEEEeecC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI-G-D--AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~-g-~--~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+.+.+++.|+++...-.. . + ..+++++..++.++|++|+....
T Consensus 145 -------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 145 -------LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp -------THHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred -------HHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 112356778887554212 1 1 24578899999999999997654
No 86
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=76.36 E-value=17 Score=25.36 Aligned_cols=73 Identities=12% Similarity=0.012 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+.+.+.+.+.+.|+.+......++... ..++.....++|-||+.......... .. .-+...++||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~-----~~-~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 24 QRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGS-----AI-EEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHH-----HH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHH-----HH-HHHHHcCCCEEEecC
Confidence 34556666777777887766544445433 45555666799999987543332211 22 344566899999864
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 98 ~ 98 (293)
T 3l6u_A 98 M 98 (293)
T ss_dssp C
T ss_pred C
Confidence 3
No 87
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=75.76 E-value=27 Score=27.33 Aligned_cols=118 Identities=12% Similarity=0.030 Sum_probs=73.1
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHAL 92 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
|..-....+|..|+.. + .+..|+++++....... .. ........+-++.+.
T Consensus 21 DLRl~DN~aL~~A~~~-------~-~v~pvfi~dp~~~~~~~--------------~~-------~~~~~fl~~sL~~L~ 71 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA-------G-PVIALFVWAPEEEGHYH--------------PG-------RVSRWWLKNSLAQLD 71 (509)
T ss_dssp CCCSTTCHHHHHHHHH-------S-CEEEEEEECGGGGTTCC--------------CC-------HHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhC-------C-CEEEEEEECchhcccCC--------------cc-------hHHHHHHHHHHHHHH
Confidence 5556677788888763 2 46788888864322100 00 011114455566677
Q ss_pred HHhhhcCCcEEEEEEe-cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVI-GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.+++.|+++. +.. |++.+.|.+++++.+++-|+.... ..+.... ........+...+|++..+...
T Consensus 72 ~~L~~~G~~L~--v~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~-rd~~v~~~l~~~gi~~~~~~~~ 139 (509)
T 1u3d_A 72 SSLRSLGTCLI--TKRSTDSVASLLDVVKSTGASQIFFNHL-YDPLSLV-RDHRAKDVLTAQGIAVRSFNAD 139 (509)
T ss_dssp HHHHHTTCCEE--EEECSCHHHHHHHHHHHHTCCEEEEECC-CSHHHHH-HHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHCCCeEE--EEeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHH-HHHHHHHHHHHcCcEEEEECCC
Confidence 77777887753 344 699999999999999999988753 2333322 2233455566678888877653
No 88
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=75.58 E-value=1.6 Score=28.37 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=35.6
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCCCc-ccee---cccchhHHHHhcCCCCEEEEcCCC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTFGP-IKRM---FLGSVSNYCANHAQCPVVVVKGKG 164 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~~~-~~~~---~~gs~~~~i~~~~~~pVliv~~~~ 164 (167)
...+.|.+++++++++.||+|..-... .... -.-.++..+....++||..+-...
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 468889999999999999999552110 1100 112344455555689999986544
No 89
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=75.10 E-value=24 Score=26.47 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=27.5
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
.++|+|++.+-.+|..++..+.+ . +-+++.+|+...
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~---G~~V~~v~~~~~ 44 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----Q---GYDVIGIFMKNW 44 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----T---TCEEEEEEEECC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----c---CCcEEEEEEECC
Confidence 46899999999998877665543 3 568999988653
No 90
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=74.97 E-value=25 Score=26.65 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=28.6
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
++++|++.+-.+|..++.++.+ .+ +.+++.+|+-..
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~---~~---g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKE---TY---RAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH---HH---TCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHH---hh---CCcEEEEEEeCC
Confidence 4799999999999888887754 35 568999998764
No 91
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=74.76 E-value=18 Score=24.84 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=27.8
Q ss_pred HHHhhhcCCcEEEEEEec--C---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 92 LKICSEKNVNVKSEVVIG--D---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.+.+.|+++...-... + ..+++.+..++.++|++|+...+
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCch
Confidence 355667788865421111 1 13678888999999999997653
No 92
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=74.47 E-value=12 Score=22.73 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=34.6
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKG 162 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~ 162 (167)
..+.+.|..+. ...+ .++.++.+++..+|+||+...-.. ..+. ...+.+-. ...+|++++-.
T Consensus 24 ~~l~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 24 LMLEKGGFDSD---MVHS-AAQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHTTCEEE---EECS-HHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHCCCeEE---EECC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEec
Confidence 34444565532 2233 455566677789999999876332 2211 23344443 23588888754
No 93
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=74.08 E-value=14 Score=23.27 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=42.5
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC--CCCEEEE
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA--QCPVVVV 160 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~--~~pVliv 160 (167)
+...++..|.++-.. -..-+.+++++.+.+.++|+|.+.......... +..+.+.+-... +++|++-
T Consensus 23 v~~~l~~~G~~Vi~l-G~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNI-GVLSPQELFIKAAIETKADAILVSSLYGQGEID--CKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHTTCEEEEE-EEEECHHHHHHHHHHHTCSEEEEEECSSTHHHH--HTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHCCCEEEEC-CCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHH--HHHHHHHHHhcCCCCCEEEEE
Confidence 345566678775432 224689999999999999999999875443332 344555443332 3666654
No 94
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=74.00 E-value=12 Score=27.75 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCh----HhHHHHHHHHhCCCEEE-EeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDA----KEKVCELVEKLHADLLV-MGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~----~~~I~~~a~~~~~dliV-~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..+++.+.+.+.++.+...+..|++ .+.+.+.+++.++|+|| +|...- ..++..+.....+|++.||
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv--------~D~aK~iA~~~~~p~i~IP 117 (370)
T 1jq5_A 46 AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKT--------LDTAKAVADELDAYIVIVP 117 (370)
T ss_dssp THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHH--------HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHH--------HHHHHHHHHhcCCCEEEec
Confidence 4556666666778777544555654 34556677788999888 553321 2233334344579999999
Q ss_pred CCC
Q 040308 162 GKG 164 (167)
Q Consensus 162 ~~~ 164 (167)
...
T Consensus 118 TTa 120 (370)
T 1jq5_A 118 TAA 120 (370)
T ss_dssp SSC
T ss_pred ccc
Confidence 764
No 95
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=73.90 E-value=15 Score=26.81 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcCCC
Q 040308 89 DHALKICSEKNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKGKG 164 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~~~ 164 (167)
+++.+.+.+.++++....... .....+...+...++|+||+.... +.+ ..+++.+.. ..++|+.++|...
T Consensus 47 ~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGD-GTl-----~~v~~~l~~~~~~~~~plgiiP~Gt 120 (332)
T 2bon_A 47 REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGD-GTI-----NEVSTALIQCEGDDIPALGILPLGT 120 (332)
T ss_dssp HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESH-HHH-----HHHHHHHHHCCSSCCCEEEEEECSS
T ss_pred HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccc-hHH-----HHHHHHHhhcccCCCCeEEEecCcC
Confidence 345556677787776654432 334455544444578877654332 222 235565653 4678999998754
Q ss_pred C
Q 040308 165 T 165 (167)
Q Consensus 165 ~ 165 (167)
.
T Consensus 121 ~ 121 (332)
T 2bon_A 121 A 121 (332)
T ss_dssp S
T ss_pred H
Confidence 3
No 96
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=73.67 E-value=17 Score=25.56 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEe--cChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVI--GDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~--g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.|+.+...... +++.+ ..++.+...++|-||+.......... . -.-+....+||+.+-
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~-----~-~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 20 SLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSK-----S-LQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHH-----H-HHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH-----H-HHHHHHCCCCEEEEc
Confidence 34555556666678776654433 34433 44555566789999987554332221 1 234556689999986
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 94 ~~ 95 (297)
T 3rot_A 94 TR 95 (297)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 97
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=73.54 E-value=13 Score=22.69 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=35.6
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHH-hCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEK-LHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGKG 164 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~~ 164 (167)
...+...|..+. ...+..+. ++...+ ..+|+|++...-.....+. ...+.+-....+||+++-...
T Consensus 22 ~~~L~~~g~~v~---~~~~~~~a-~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 22 ANILNKYGYTVE---IALTGEAA-VEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp HHHHHHTTCEEE---EESSHHHH-HHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESSS
T ss_pred HHHHHHcCCEEE---EecChHHH-HHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECCC
Confidence 344444565432 23344444 444444 6899999997643212221 233444444569999886543
No 98
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=73.49 E-value=8.9 Score=23.13 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 89 DHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+.+++.+.+.|++++.....-. ++..... ++|+|+.+..-...+. ..+......++||+++++
T Consensus 22 ~kl~~~~~~~gi~~~i~~~~~~---~~~~~~~--~~D~Ii~t~~l~~~~~------~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 22 QRIEKYAKSKNINATIEAIAET---RLSEVVD--RFDVVLLAPQSRFNKK------RLEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHHTCSEEEEEECST---THHHHTT--TCSEEEECSCCSSHHH------HHHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHHCCCCeEEEEecHH---HHHhhcC--CCCEEEECCccHHHHH------HHHHHhcccCCCEEEECh
Confidence 3444555666776654322211 2222333 8999999865332221 112333444678887754
No 99
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=73.10 E-value=12 Score=22.14 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=36.1
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+...|..+. ...+ .++.++.+++..+|+|++...-.+. .+. ...+.+-...++|++++-.
T Consensus 20 ~~L~~~g~~v~---~~~~-~~~al~~~~~~~~dlii~D~~~p~~-~g~---~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 20 FNLRKEGYEVH---CAHD-GNEAVEMVEELQPDLILLDIMLPNK-DGV---EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHTTCEEE---EESS-HHHHHHHHHTTCCSEEEEETTSTTT-HHH---HHHHHHHTTCCSCEEEEEE
T ss_pred HHHHhCCEEEE---EeCC-HHHHHHHHhhCCCCEEEEeCCCCCC-CHH---HHHHHHHhcCCCCEEEEEC
Confidence 34444565442 2234 4455667777899999998764332 211 2344554555789988754
No 100
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=72.73 E-value=25 Score=25.63 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
++.+.+.+.... .+++-.-+-..+..+.| .+.+++.++|-+.+-..-.....+--+-..-+.|...++.||++..
T Consensus 81 ~v~~~~v~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 157 (315)
T 3na8_A 81 EVVDFTLKTVAH-RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYN 157 (315)
T ss_dssp HHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 334444444332 24443332222444443 3568888999999987654333222122344678888999999985
No 101
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=72.56 E-value=12 Score=25.29 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=40.6
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC---CCCEEEEc
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA---QCPVVVVK 161 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~---~~pVliv~ 161 (167)
...++..|.++... -..-|.+++++.+++.++|+|.+.......... +..+.+.+=+.. ++||++--
T Consensus 109 a~~l~~~G~~v~~L-G~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 109 AMMLESGGFTVYNL-GVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHHTTCEEEEC-CSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEES
T ss_pred HHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEEC
Confidence 34445566654321 223589999999999999999998764433322 233444443332 27877754
No 102
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=72.56 E-value=24 Score=25.41 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.+.+.... .+++-.-+-..+..+.| .+.+++.++|-+.+-..-.....+--+-..-+.|...++.||++..
T Consensus 64 ~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 140 (297)
T 3flu_A 64 AVIEAVVKHVAK-RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYN 140 (297)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 334444444332 24443332222444443 3578888999999887654333221112344678888999999985
No 103
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=71.66 E-value=15 Score=22.74 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=36.6
Q ss_pred HHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 90 HALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
.+...+...|..+. ...+ .++.++.+++..+|+|++...-.. ..++ .+.+.+-.. ..+||+++-..
T Consensus 29 ~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 29 RLQQLLSPLPYTLH---FARD-ATQALQLLASREVDLVISAAHLPQ-MDGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHTTSSCEEE---EESS-HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHhcccCcEEE---EECC-HHHHHHHHHcCCCCEEEEeCCCCc-CcHH---HHHHHHHhHCCCCeEEEEECC
Confidence 33445555565432 2233 445556667779999999976432 2221 233444333 35899888654
No 104
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=71.33 E-value=20 Score=24.03 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=27.8
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
.++++|++.+-.+|..++..+... +.+++.+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-------~~~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-------FEEVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-------CSEEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-------CCceEEEEEeCC
Confidence 368999999999998777766543 357888888764
No 105
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=71.26 E-value=20 Score=24.94 Aligned_cols=72 Identities=7% Similarity=-0.033 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+.+.+.+.+.+.|+.+......+++. ...++.+...++|-||+......... ... ..+...++||+++-..
T Consensus 22 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 22 KAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN-----PWL-QKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHH-----HHH-HHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HHH-HHHHHCCCcEEEecCC
Confidence 455666667777787776654444543 34556666679999998754321111 122 3455668999988643
No 106
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=71.24 E-value=14 Score=22.06 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGKG 164 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~~ 164 (167)
...+...|..+.. ..+ .++.++..++..+|+|++...-.+ ..+. ...+.+-... .+|++++-...
T Consensus 24 ~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 24 DSWFSSLGATTVL---AAD-GVDALELLGGFTPDLMICDIAMPR-MNGL---KLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHHHTTCEEEE---ESC-HHHHHHHHTTCCCSEEEECCC------CH---HHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHHhCCceEEE---eCC-HHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHhcCCCCCEEEEEcCC
Confidence 3444455654422 233 455566667788999999875332 1111 2334444433 48998886543
No 107
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=71.22 E-value=14 Score=21.98 Aligned_cols=66 Identities=6% Similarity=-0.031 Sum_probs=36.8
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCCC
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGKG 164 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~~ 164 (167)
+...+.+.|..+. .-.-.++.++.+++..+|+|++...-.+ ..+. ...+.+-.. ..+||+++-...
T Consensus 19 l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 19 FKELLEMLGFQAD----YVMSGTDALHAMSTRGYDAVFIDLNLPD-TSGL---ALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HHHHHHHTTEEEE----EESSHHHHHHHHHHSCCSEEEEESBCSS-SBHH---HHHHHHHHSCCSSCCEEEEEECC-
T ss_pred HHHHHHHcCCCEE----EECCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhhccCCCCEEEEECCc
Confidence 3344444554332 2233455666777789999999976432 2211 244445443 458999886543
No 108
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=71.01 E-value=27 Score=25.27 Aligned_cols=84 Identities=10% Similarity=0.106 Sum_probs=53.1
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
..+||.|-+.++.++..++-++..- ... ++++.++-.-.+.
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l---~~~i~~Visn~~~----------------------------------- 134 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKM-GEL---KMDIVGIVSNHPD----------------------------------- 134 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHH-TSS---CCEEEEEEESSST-----------------------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHc-CCC---CcEEEEEEeCcHH-----------------------------------
Confidence 3568999999998888877776543 333 4565554332211
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe-cC---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI-GD---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~-g~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+ ...++++|+++...-.. .+ ..+++++..++.++|++|+....
T Consensus 135 ~-------~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 135 F-------APLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp T-------HHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred H-------HHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 0 12356788887653222 11 23578899999999999997654
No 109
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=70.92 E-value=15 Score=23.91 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=40.3
Q ss_pred HHHhhhcCCcEEEEEEe-cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC--CCCEEEE
Q 040308 92 LKICSEKNVNVKSEVVI-GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA--QCPVVVV 160 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~--~~pVliv 160 (167)
...++..|.++.. .. .-+.+++++.+.+.++|+|.+.......... +..+.+.+-... +++|++-
T Consensus 39 a~~l~~~G~eVi~--lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~--~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 39 ARALRDAGFEVVY--TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHL--MKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHHTTCEEEC--CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHH--HHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHCCCEEEE--CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHH--HHHHHHHHHhcCCCCCEEEEe
Confidence 3445666766422 22 2588999999999999999998875443332 233444443332 3676664
No 110
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=70.90 E-value=25 Score=24.95 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+.+.+.+.+.+.|+.+......+++.. ..++.....++|-||+......... ... .-+...++||+++-..
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~giPvV~~~~~ 93 (330)
T 3uug_A 20 DDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS-----DVL-KQAGEQGIKVIAYDRL 93 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH-----HHH-HHHHHTTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH-----HHH-HHHHHCCCCEEEECCC
Confidence 4455666667777887766554455543 3445555678999998755322211 112 3455678999998653
No 111
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=70.53 E-value=25 Score=25.40 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=51.1
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
..+||.|-+.++.++..++-.+.. .... ++++.+ |+...+..
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~-~g~l---~~~i~~--Visn~p~~-------------------------------- 129 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWR-VGDL---HMIPTA--IVSNHPRE-------------------------------- 129 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHH-TTSS---CEEEEE--EEESSCGG--------------------------------
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHH-CCCC---CeEEEE--EEcCCChh--------------------------------
Confidence 457899999999888888777754 2223 344444 44322000
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEec-C---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIG-D---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g-~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+.+.++++|+++...-... + ..+++++..++.++|++|+....
T Consensus 130 -------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 130 -------TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp -------GSCCTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred -------HHHHHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 0133566788765532211 1 23568888888899999997653
No 112
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=70.41 E-value=26 Score=24.85 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=71.5
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
|+.....=|+..+........+..+.+|+.. + --+.-|.-.+....+.-.. ...++ ++..
T Consensus 25 m~~VtSANIACGfHAGDp~~M~~tv~lA~~~---g-V~IGAHPgypDl~GFGRR~---------m~~s~-------~el~ 84 (255)
T 1v6t_A 25 MKYITSANVACGWHAGDPLVMRKTVRLAKEN---D-VQVGAHPGYPDLMGFGRRY---------MKLTP-------EEAR 84 (255)
T ss_dssp TTTCSEEEEECSSSSCCHHHHHHHHHHHHHT---T-CEEEEECCCSCTTTTTCSC---------CCCCH-------HHHH
T ss_pred HHHhhhhhhhccccCCCHHHHHHHHHHHHHc---C-CeEecCCCCCcccCCCCCC---------CCCCH-------HHHH
Confidence 4555666677888888888999999999988 3 4455666554433221110 00111 2222
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEec----------ChHhHHHHHHHHhCCCEEEEeecC
Q 040308 82 RITQAIIDHALKICSEKNVNVKSEVVIG----------DAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g----------~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+.....+-.+...++..|.++..+--.| ..++.|.+.+...+.+|+++|..+
T Consensus 85 ~~v~YQiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g 146 (255)
T 1v6t_A 85 NYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN 146 (255)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT
T ss_pred HHHHHHHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 3333335556677788888877653332 458889999999999999999654
No 113
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=70.15 E-value=27 Score=24.87 Aligned_cols=49 Identities=8% Similarity=0.155 Sum_probs=32.4
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
.+.|.+..++.++|+|+.-...-........+..+...++..++|+++.
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 4456677888999999986444334444455556666667777777665
No 114
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=69.98 E-value=23 Score=24.15 Aligned_cols=84 Identities=11% Similarity=0.115 Sum_probs=51.4
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQ 85 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (167)
+||.|-+.++..+..++-.+.. .... +.++.++-..++.. .
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~-~~~~---~~~I~~Vvs~~~~~---------------------~-------------- 41 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTR-EPNS---SAQIDIVISNKAAV---------------------A-------------- 41 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHH-STTC---SCEEEEEEESSTTC---------------------H--------------
T ss_pred CeEEEEEECCchHHHHHHHHHh-cCCC---CcEEEEEEeCCCCh---------------------H--------------
Confidence 4789999999888887765543 2223 34555554433210 0
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEe--cC---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVI--GD---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~--g~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
..+.+.+.|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 42 -----~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 42 -----GLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp -----HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred -----HHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 025567788887543211 11 13578888899999999998654
No 115
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=69.95 E-value=28 Score=25.11 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.+.+......+++-.-+-..+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 64 ~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 141 (301)
T 3m5v_A 64 TCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYN 141 (301)
T ss_dssp HHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344444444433234432222222444444 3567888999999987654333221122344668888999999985
No 116
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=69.65 E-value=26 Score=24.57 Aligned_cols=73 Identities=15% Similarity=0.056 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhcCCcEEEEE-EecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 85 QAIIDHALKICSEKNVNVKSEV-VIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v-~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..+.+.+.+.+.+.|..+.... ..+++.+ ..++.+...++|-||+.......... .. .-+...++||+++-
T Consensus 20 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~-~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 20 KRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD-----TI-NKAVDAGIPIVLFD 93 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH-----HH-HHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH-----HH-HHHHHCCCcEEEEC
Confidence 3455566666677787776532 2334433 44555666799999986543332221 22 23456789999986
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 94 ~~ 95 (305)
T 3g1w_A 94 SG 95 (305)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 117
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=69.64 E-value=21 Score=27.58 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=31.2
Q ss_pred CcEEEEEEecChHhHHHH--HHHHhCCCEEEE-eecCCCccceecccc
Q 040308 100 VNVKSEVVIGDAKEKVCE--LVEKLHADLLVM-GSHTFGPIKRMFLGS 144 (167)
Q Consensus 100 ~~~~~~v~~g~~~~~I~~--~a~~~~~dliV~-g~~~~~~~~~~~~gs 144 (167)
.-+..++..|++.+.|.+ .|..+++|.|-+ -+.+.+.+..+..|.
T Consensus 151 p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~Ga 198 (516)
T 1xrs_A 151 PLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGA 198 (516)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSC
T ss_pred CEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCC
Confidence 445566788999999985 577899998855 455555555544453
No 118
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=69.59 E-value=14 Score=21.77 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeec
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~ 132 (167)
++.+.+.+...+++..+-..++.+ ..++.-+++++..++..+++-..
T Consensus 37 elkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiyd 84 (134)
T 2l69_A 37 ELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYD 84 (134)
T ss_dssp HHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred HHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 445566677777887776666665 57788889999988888877654
No 119
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=68.42 E-value=4.1 Score=30.28 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=34.6
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecC--CCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHT--FGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~--~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+..+.++..+ ++|+||+|... .+-...++...+.+. ++++++|++.|.+
T Consensus 177 ~a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~N 228 (341)
T 2p0y_A 177 QAVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICN 228 (341)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeC
Confidence 45666778787 89999999654 233334445555555 6778899988865
No 120
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=68.38 E-value=12 Score=27.67 Aligned_cols=49 Identities=12% Similarity=0.244 Sum_probs=34.5
Q ss_pred hHhHHHHHHHHhCCCEEEEeecC--CCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 111 AKEKVCELVEKLHADLLVMGSHT--FGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 111 ~~~~I~~~a~~~~~dliV~g~~~--~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+..+.++..+ ++|+||+|... .+-...++...+.+. ++++++|++.|.+
T Consensus 168 ~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 218 (323)
T 2o2z_A 168 PLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICN 218 (323)
T ss_dssp CCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECC
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcC
Confidence 5677888888 89999999654 233333455555665 6778999988865
No 121
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=68.22 E-value=20 Score=24.68 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=47.7
Q ss_pred HHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040308 19 MDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSEK 98 (167)
Q Consensus 19 ~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (167)
...++.++++|+.. +++.+++|.-..... ... ..+...+...+.++.+.+.+.+.
T Consensus 75 ~~~~~~~i~~A~~l---Ga~~v~~~~g~~~~~------------------~~~----~~~~~~~~~~~~l~~l~~~a~~~ 129 (254)
T 3ayv_A 75 LRRLLFGLDRAAEL---GADRAVFHSGIPHGR------------------TPE----EALERALPLAEALGLVVRRARTL 129 (254)
T ss_dssp HHHHHHHHHHHHHT---TCSEEEEECCCCTTC------------------CHH----HHHHTHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCEEEECCCCCccc------------------ccc----cHHHHHHHHHHHHHHHHHHHhhc
Confidence 46688899999999 888887774332110 000 11222234445556666777778
Q ss_pred CCcEEEEEEecChHhHHHHHHHHhC
Q 040308 99 NVNVKSEVVIGDAKEKVCELVEKLH 123 (167)
Q Consensus 99 ~~~~~~~v~~g~~~~~I~~~a~~~~ 123 (167)
|+.+-.+-..+...+.+.+++++.+
T Consensus 130 gv~l~lEn~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 130 GVRLLLENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp TCEEEEECSSCSSGGGTHHHHHHHT
T ss_pred CCEEEEcCCCCCCHHHHHHHHHhcC
Confidence 8877666544444566666666544
No 122
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=67.92 E-value=17 Score=27.32 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEe
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQ 45 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~ 45 (167)
...+++.+++|+++|++. ..+|+++|=-
T Consensus 178 r~~~eRIar~AFe~A~~r---rkkVT~v~Ka 205 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQGR---RKKVTSVDKA 205 (375)
T ss_dssp HHHHHHHHHHHHHHHHTT---TSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHc---CCcEEEEECc
Confidence 357899999999999988 7898888743
No 123
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=67.87 E-value=7 Score=26.18 Aligned_cols=37 Identities=5% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEE
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHV 44 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v 44 (167)
|++||++++.++..+..+++..-.|.+ . +.+++++-.
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~---g~~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-H---FDEVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-T---SSCEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-C---CCEEEEEEc
Confidence 568999999999998888888777644 4 467777653
No 124
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=67.63 E-value=17 Score=22.50 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=34.3
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKG 162 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~ 162 (167)
..+...|..+. ...+ .++.++...+..+|+||+...-.+ ..+. ...+.+-.. ..+||+++-.
T Consensus 21 ~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 21 QTLELAGFTVS---SFAS-ATEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHTTCEEE---EESC-HHHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHcCcEEE---EECC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEEC
Confidence 33344565432 2233 455556666778999999976432 2211 233444433 3589988854
No 125
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=67.62 E-value=36 Score=25.40 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh--c-CCCCEEEE
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN--H-AQCPVVVV 160 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~--~-~~~pVliv 160 (167)
+++.+.+.+.+.+.+++++..-........+.+... ++|.||+|+.-...--...+-...+++.. . ...|+.++
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~ 347 (414)
T 2q9u_A 271 HRMALALLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAF 347 (414)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEE
Confidence 455555555555556665554333333344444555 89999999875432222122334444432 1 34566554
No 126
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=67.52 E-value=32 Score=24.88 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=27.6
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
++++|++.+..+|.-++..+.+. . +.+++.+|+-..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~---g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---I---GDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---H---GGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---h---CCCEEEEEEcCC
Confidence 58999999999998777766553 3 457888888653
No 127
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=67.34 E-value=32 Score=24.75 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=51.4
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRIT 84 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (167)
.+||.|-+.++.++..++-.+.. .... ++++.++-.-.+.
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~-~g~l---~~~i~~Visn~~~------------------------------------ 129 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQR-IGQL---GMDVVAVVSNHPD------------------------------------ 129 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHH-TTSS---CCEEEEEEESSST------------------------------------
T ss_pred CcEEEEEEeCCCCCHHHHHHHHH-CCCC---CcEEEEEEeCcHH------------------------------------
Confidence 45888888888877777766644 2233 4555554332211
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEe-cC---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVI-GD---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~-g~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+...++++|+++...-.. .+ ..+++++..++.++|++|+....
T Consensus 130 ------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 130 ------LEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ------THHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ------HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 012356788887653221 11 23578899999999999998654
No 128
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=67.31 E-value=5.3 Score=29.57 Aligned_cols=50 Identities=22% Similarity=0.368 Sum_probs=34.6
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecC--CCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHT--FGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~--~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+..+.++..+ ++|+||+|... .+-...++...+.+. ++.+++|++.|.+
T Consensus 166 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 217 (332)
T 2ppv_A 166 EPMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSN 217 (332)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcC
Confidence 34677888888 89999999654 233333445555555 6778999998875
No 129
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=67.17 E-value=28 Score=24.08 Aligned_cols=77 Identities=10% Similarity=-0.119 Sum_probs=46.8
Q ss_pred HHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 040308 21 ALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSEKNV 100 (167)
Q Consensus 21 al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (167)
.++.++++|+.. +++.+.+++.+... .. .+...+...+.++.+.+.+.++|+
T Consensus 85 ~~~~~i~~A~~l---G~~~v~~~~~p~~~-------------------~~------~~~~~~~~~~~l~~l~~~a~~~Gv 136 (281)
T 3u0h_A 85 LLPDRARLCARL---GARSVTAFLWPSMD-------------------EE------PVRYISQLARRIRQVAVELLPLGM 136 (281)
T ss_dssp THHHHHHHHHHT---TCCEEEEECCSEES-------------------SC------HHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHHHc---CCCEEEEeecCCCC-------------------Cc------chhhHHHHHHHHHHHHHHHHHcCC
Confidence 456788999999 88887766533211 00 112334455566777778888898
Q ss_pred cEEEEEEe-----------cChHhHHHHHHHHhCCC
Q 040308 101 NVKSEVVI-----------GDAKEKVCELVEKLHAD 125 (167)
Q Consensus 101 ~~~~~v~~-----------g~~~~~I~~~a~~~~~d 125 (167)
.+-.+... ....+.+.+++++.+.+
T Consensus 137 ~l~lE~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 172 (281)
T 3u0h_A 137 RVGLEYVGPHHLRHRRYPFVQSLADLKTFWEAIGAP 172 (281)
T ss_dssp EEEEECCCCGGGCCSSEECCCSHHHHHHHHHHHCCT
T ss_pred EEEEEeccccccccccccccCCHHHHHHHHHHcCCC
Confidence 77666432 23456677777765543
No 130
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=66.69 E-value=26 Score=24.02 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcCCcEEEEEE--ecChHh--HHHHHHHHhC-CCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 86 AIIDHALKICSEKNVNVKSEVV--IGDAKE--KVCELVEKLH-ADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~--~g~~~~--~I~~~a~~~~-~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
.+.+.+.+.+.+.|..+..... .+++.+ ..++.....+ +|-||+.......... . -..+...++||+++
T Consensus 17 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~-----~-~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 17 QVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTP-----S-VAQYRARNIPVLVV 90 (276)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHH-----H-HHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHH-----H-HHHHHHCCCcEEEE
Confidence 4455556666667877655432 234433 3444455556 9999997643222221 2 23456678999998
Q ss_pred cCC
Q 040308 161 KGK 163 (167)
Q Consensus 161 ~~~ 163 (167)
-..
T Consensus 91 ~~~ 93 (276)
T 3ksm_A 91 DSD 93 (276)
T ss_dssp SSC
T ss_pred ecC
Confidence 543
No 131
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=66.37 E-value=33 Score=24.48 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=38.0
Q ss_pred HHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
++.+.+.+.+.|+.+-+.+.+-.-.+.+ .+ .+|++=+|+..-.... +.+++ ..+.+||++=++.
T Consensus 64 L~~l~~~~~e~Glp~~te~~d~~~~~~l----~~-~vd~~~IgA~~~rn~~------ll~~~-a~~~~PV~lK~G~ 127 (267)
T 2nwr_A 64 VKALRKVKEEFGLKITTDIHESWQAEPV----AE-VADIIQIPAFLCRQTD------LLLAA-AKTGRAVNVKKGQ 127 (267)
T ss_dssp HHHHHHHHHHHCCEEEEECSSGGGHHHH----HT-TCSEEEECGGGTTCHH------HHHHH-HTTTSEEEEECCT
T ss_pred HHHHHHHHHhcCCeEEEecCCHHhHHHH----Hh-cCCEEEECcccccCHH------HHHHH-HcCCCcEEEeCCC
Confidence 3335556678899887766554333333 33 5899999986533332 33444 3567888775543
No 132
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=66.32 E-value=20 Score=28.17 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=31.7
Q ss_pred HhHHHHHH-HHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 112 KEKVCELV-EKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a-~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
...+.+.+ ++.++|.||+=.+..++-+ ..-.+++..++|||+....
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~TFs~a~------~~i~~l~~l~~PvL~~~~q 106 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHTFSPAK------MWINGLTMLNKPLLQFHTQ 106 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCSCCCTH------HHHHHHHHCCSCEEEEECC
T ss_pred HHHHHHHhccccCCcEEEEeCCcCccHH------HHHHHHHhcCCCEEEEeCC
Confidence 44444555 4568999999887766443 3346778889999998643
No 133
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=66.26 E-value=39 Score=25.35 Aligned_cols=39 Identities=23% Similarity=0.136 Sum_probs=26.9
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
|...-++|+|++.+-.+|..++..+. .. +-+++.+|+..
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~----~~---G~~V~~v~~~~ 51 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQ----QQ---GYQVEGLFMKN 51 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHH----TT---CCEEEEEEEEC
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHH----Hc---CCeEEEEEEEc
Confidence 33456799999999988886665543 34 56899999865
No 134
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=65.54 E-value=25 Score=24.83 Aligned_cols=127 Identities=13% Similarity=-0.027 Sum_probs=76.2
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
|+.....=|+..+........+..+.+|+.. + --+.-|.-.+....+.-.. ...++ ++..
T Consensus 25 m~~VtSANIACGfHAGDp~~M~~tv~lA~~~---g-V~IGAHPgypDl~GFGRR~---------m~~s~-------~el~ 84 (250)
T 2dfa_A 25 FPLVSSANLACGFHGGSPGRILEAVRLAKAH---G-VAVGAHPGFPDLVGFGRRE---------MALSP-------EEVY 84 (250)
T ss_dssp TTTCSEEEEECSSSSCCHHHHHHHHHHHHHT---T-CEEEEECCCSCTTTTTCSC---------CCCCH-------HHHH
T ss_pred HHhhhhhhhhccccCCCHHHHHHHHHHHHHc---C-CeEecCCCCCcccCCCCCC---------CCCCH-------HHHH
Confidence 4555666677888888888999999999988 3 3455666554433221110 00111 2222
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEEe----------cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh
Q 040308 82 RITQAIIDHALKICSEKNVNVKSEVVI----------GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN 151 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~----------g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~ 151 (167)
+.....+-.+...++..|.++..+--. ...++.|.+.+...+.+|+++|..+ |...+..+
T Consensus 85 ~~v~YQiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g----------s~~~~~A~ 154 (250)
T 2dfa_A 85 ADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPG----------TVYEEEAR 154 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECTT----------SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC----------hHHHHHHH
Confidence 233333455566777777665544222 2468899999999999999999543 23344555
Q ss_pred cCCCCEE
Q 040308 152 HAQCPVV 158 (167)
Q Consensus 152 ~~~~pVl 158 (167)
....|++
T Consensus 155 ~~Gl~~~ 161 (250)
T 2dfa_A 155 KAGLRVV 161 (250)
T ss_dssp HTTCCEE
T ss_pred HcCCcEE
Confidence 5555554
No 135
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=65.42 E-value=24 Score=22.69 Aligned_cols=72 Identities=6% Similarity=0.062 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.+.|+.+++.... |...+.|-+... +.|-||+.....+..+- -....+...++|++=|+
T Consensus 29 l~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~--~~dgiiINpgA~THtSv-----AlrDAl~~v~~P~VEVH 101 (146)
T 1h05_A 29 HDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAAD--AAEPVILNAGGLTHTSV-----ALRDACAELSAPLIEVH 101 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHH--HTCCEEEECGGGGGTCH-----HHHHHHHTCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh--cCcEEEECchhhccccH-----HHHHHHHhCCCCEEEEE
Confidence 4556667777788889888776432 455666655544 59999998655432221 23567777889998776
Q ss_pred C
Q 040308 162 G 162 (167)
Q Consensus 162 ~ 162 (167)
-
T Consensus 102 i 102 (146)
T 1h05_A 102 I 102 (146)
T ss_dssp S
T ss_pred e
Confidence 3
No 136
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=65.27 E-value=20 Score=21.58 Aligned_cols=66 Identities=6% Similarity=0.081 Sum_probs=35.7
Q ss_pred HHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCC----ccceecccchhHHHHhc-CCCCEEEEcC
Q 040308 90 HALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFG----PIKRMFLGSVSNYCANH-AQCPVVVVKG 162 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~----~~~~~~~gs~~~~i~~~-~~~pVliv~~ 162 (167)
.+...+...|..+. ...+ .++.++...+..+|+||+...-.. ...+. ...+.+-.. ..+|++++-.
T Consensus 18 ~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 18 AVQLLLKNHFSKVI---TLSS-PVSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp HHHHHHTTTSSEEE---EECC-HHHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHhCCcEEE---EeCC-HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEEEC
Confidence 33444455565443 2223 455666677778999999876331 12211 233444433 3588888743
No 137
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=65.26 E-value=36 Score=24.62 Aligned_cols=97 Identities=11% Similarity=0.187 Sum_probs=56.3
Q ss_pred cEEEEeecCChhHHHHHHHHHHhcccc----------------CCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCC
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLR----------------SPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEV 69 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~----------------~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (167)
.+|+|++.+..+|...+..+...+... .+ +.++.++|+.....+.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~vv~iDtg~~fp------------------ 114 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFP-MQRLPTVFIDQEETFP------------------ 114 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CC-CCCEEEEECCCTTCCH------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccC-CCCeeEEEEeCCCCCH------------------
Confidence 479999999999998888776653110 00 2467788876532211
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEe----cChHhHHHHHHHHh-CCCEEEEeecCCCcc
Q 040308 70 PAFTAAIEAHQGRITQAIIDHALKICSEKNVNVKSEVVI----GDAKEKVCELVEKL-HADLLVMGSHTFGPI 137 (167)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~~~~~I~~~a~~~-~~dliV~g~~~~~~~ 137 (167)
+..+.+.+.+.++|+++...... ....+.+.++++.. ..+.|++|.+.....
T Consensus 115 ----------------et~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~ 171 (306)
T 2wsi_A 115 ----------------TLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPF 171 (306)
T ss_dssp ----------------HHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSS
T ss_pred ----------------HHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccccc
Confidence 11222233445567665433111 23455666676653 678999998764433
No 138
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=65.09 E-value=4.7 Score=29.75 Aligned_cols=49 Identities=12% Similarity=0.268 Sum_probs=34.0
Q ss_pred hHhHHHHHHHHhCCCEEEEeecC--CCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 111 AKEKVCELVEKLHADLLVMGSHT--FGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 111 ~~~~I~~~a~~~~~dliV~g~~~--~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+..+.++..+ ++|+||+|... .+-...++...+.+. ++++++|++.|.+
T Consensus 174 a~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 174 ASRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp BCSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 4566777777 89999999654 233334455555555 6778899988865
No 139
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=64.91 E-value=21 Score=26.72 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEE
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHV 44 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v 44 (167)
...+++.+++|+++|++. ..+|+++|=
T Consensus 166 r~~~eRIar~AFe~A~~r---rkkVT~v~K 192 (361)
T 3udu_A 166 KKEIERIARIAFESARIR---KKKVHLIDK 192 (361)
T ss_dssp HHHHHHHHHHHHHHHHHT---TSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHc---CCcEEEEEC
Confidence 356899999999999988 789988874
No 140
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=64.84 E-value=12 Score=25.72 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=29.0
Q ss_pred CCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEE
Q 040308 2 SGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLH 43 (167)
Q Consensus 2 ~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~ 43 (167)
|...++|++++.++-.+..+++..-.|.+ . +.+++++-
T Consensus 1 m~~~k~IllgvTGaiaa~k~~~ll~~L~~-~---g~eV~vv~ 38 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQYGLRLLDCLVQ-E---EREVHFLI 38 (209)
T ss_dssp CCSCSEEEEEECSSSCHHHHHHHHHHHHH-T---TCEEEEEE
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHH-C---CCEEEEEE
Confidence 33448999999999999988888766655 4 57777664
No 141
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=64.69 E-value=22 Score=21.95 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=34.6
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKG 162 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~ 162 (167)
..+...|..+. ...+ ..+.+..+.+..+|+||+...-.+ ..+. .....+-.. ..+||+++-.
T Consensus 25 ~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 25 RLIKRLGCNII---TFTS-PLDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHTTTCEEE---EESC-HHHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHcCCeEE---EeCC-HHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 33444565432 2233 455666777778999999976432 2211 234444433 3588888754
No 142
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=64.11 E-value=32 Score=25.46 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
...+++.+++|+++|++. ..+|+++|=-+
T Consensus 143 ~~~~eRiar~AF~~A~~r---rkkvt~v~KaN 171 (336)
T 1wpw_A 143 RFASERIAKVGLNFALRR---RKKVTCVHKAN 171 (336)
T ss_dssp HHHHHHHHHHHHHHHHTT---TSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHh---CCeEEEEECCc
Confidence 366899999999999998 78888887544
No 143
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=64.04 E-value=13 Score=26.94 Aligned_cols=106 Identities=12% Similarity=0.031 Sum_probs=58.2
Q ss_pred CcEEEEeecCChh---HHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 040308 5 LGCVIVAVDGGEE---SMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQG 81 (167)
Q Consensus 5 ~~~ILv~id~s~~---s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (167)
-+.-|+.+-+.+. ....+++.++++... +.+|.++ -.... ..
T Consensus 25 ~~g~l~iiGGgedk~~~~~i~~~~v~lagg~---~~~I~~I--ptAs~-------------------~~----------- 69 (291)
T 3en0_A 25 SQPAILIIGGAEDKVHGREILQTFWSRSGGN---DAIIGII--PSASR-------------------EP----------- 69 (291)
T ss_dssp CSCCEEEECSSCCSSSCCHHHHHHHHHTTGG---GCEEEEE--CTTCS-------------------SH-----------
T ss_pred CCceEEEEECCCCccChHHHHHHHHHHcCCC---CCeEEEE--eCCCC-------------------Ch-----------
Confidence 3456777766653 457899999998865 5566554 22110 00
Q ss_pred HHHHHHHHHHHHHhhhcCC-cEEEEEEe---cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHH
Q 040308 82 RITQAIIDHALKICSEKNV-NVKSEVVI---GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCA 150 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~---g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~ 150 (167)
+...+.+.+.+.+.|+ +++..... .-....+.+..+ ++|.|+++-.....+.+.+.++-...++
T Consensus 70 ---~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L 137 (291)
T 3en0_A 70 ---LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRI 137 (291)
T ss_dssp ---HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHH
Confidence 0112222344555676 45544332 123456677777 8999999876544444444444444444
No 144
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=63.93 E-value=26 Score=22.48 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.+.|+++++.... |...+.|-+... +.|-||+.....+..+- -....+...++|++=|+
T Consensus 27 l~di~~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~--~~dgiiiNpgA~THtSv-----AlrDAl~~v~~P~VEVH 99 (143)
T 1gqo_A 27 LTDIETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEE--QYSGIVLNPGALSHYSY-----AIRDAVSSISLPVVEVH 99 (143)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTT--TCSEEEEECGGGGGTCH-----HHHHHHHTSCSCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh--cCcEEEEccchhccccH-----HHHHHHHhCCCCEEEEE
Confidence 4556666777777888887765422 445555544433 69999998655432221 22566777889998776
Q ss_pred C
Q 040308 162 G 162 (167)
Q Consensus 162 ~ 162 (167)
-
T Consensus 100 i 100 (143)
T 1gqo_A 100 L 100 (143)
T ss_dssp S
T ss_pred e
Confidence 3
No 145
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=63.93 E-value=19 Score=26.73 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
...+++.+++|+++|++. ..+|+++|=-+
T Consensus 153 ~~~~eRiar~AFe~A~~r---rkkVt~v~KaN 181 (337)
T 1w0d_A 153 AFGVRRVVADAFERARRR---RKHLTLVHKTN 181 (337)
T ss_dssp HHHHHHHHHHHHHHHHHT---TSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHc---CCeEEEEECCc
Confidence 466899999999999998 78888887433
No 146
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=63.70 E-value=30 Score=23.20 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHH-HhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVE-KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~-~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.+.+.+.++ .+..++..+.+...-+ +.++|.|| . .|.++..+-++.+.||+-++-.
T Consensus 22 ~i~~e~~~~i--~i~~~~l~~~v~~a~~~~~~~dVII-S-----------RGgta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 22 KLALEKNFIP--ITKTASLTRASKIAFGLQDEVDAII-S-----------RGATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp HHHHHHTCEE--EEEECCHHHHHHHHHHHTTTCSEEE-E-----------EHHHHHHHHTTCSSCEEEECCC
T ss_pred HHHhhhCCce--EEEECCHHHHHHHHHHhcCCCeEEE-E-----------CChHHHHHHHhCCCCEEEEcCC
Confidence 3333334433 4556665444332211 46777444 3 2567777777788999988764
No 147
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=63.47 E-value=29 Score=22.94 Aligned_cols=72 Identities=6% Similarity=0.062 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.+.|+.+++.... |...+.|-+... ++|-||+.....+..+- -....+...++|++=|+
T Consensus 55 L~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~--~~dgIIINPgAyTHtSv-----AlrDAL~~v~~P~VEVH 127 (172)
T 3n8k_A 55 HDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAAD--AAEPVILNAGGLTHTSV-----ALRDACAELSAPLIEVH 127 (172)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHH--HTCCEEEECGGGGGTCH-----HHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhh--cCcEEEECcchhhhhhH-----HHHHHHHhCCCCEEEEE
Confidence 4555666677777888888776433 556666665443 68999998655432221 22445667789998776
Q ss_pred C
Q 040308 162 G 162 (167)
Q Consensus 162 ~ 162 (167)
-
T Consensus 128 i 128 (172)
T 3n8k_A 128 I 128 (172)
T ss_dssp S
T ss_pred c
Confidence 3
No 148
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=63.21 E-value=35 Score=23.71 Aligned_cols=72 Identities=11% Similarity=-0.010 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
...+.+.+.+.+.+.|..+......++.. ..+++.....++|-||+..... .. ..-..+...++||+++-
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~------~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 23 FAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG--EH------DYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--CC------HHHHHSSCTTSCEEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--Ch------HHHHHhhccCCCEEEEe
Confidence 34456666677777887776654444443 3466667778999999865432 11 12234566789999886
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 95 ~~ 96 (291)
T 3egc_A 95 RE 96 (291)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 149
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=63.05 E-value=25 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEe
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQ 45 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~ 45 (167)
...+++.+++|+++|++. ..+|+++|=-
T Consensus 185 r~~~eRIar~AFe~A~~r---rkkVT~v~Ka 212 (390)
T 3u1h_A 185 REEIERIIRKAFELALTR---KKKVTSVDKA 212 (390)
T ss_dssp HHHHHHHHHHHHHHHHTT---TSEEEEEECT
T ss_pred HHHHhHHHHHHHHHHHHc---CCceEEEECC
Confidence 357899999999999988 7898888743
No 150
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=63.03 E-value=26 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEE
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHV 44 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v 44 (167)
...+++.+++|+++|+.. ..+|+++|=
T Consensus 206 r~~~eRIar~AFe~A~~r---rkkVT~v~K 232 (405)
T 3r8w_A 206 AHEIDRIARVAFETARKR---RGKLCSVDK 232 (405)
T ss_dssp HHHHHHHHHHHHHHHHTT---TSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHc---CCeEEEEEC
Confidence 357899999999999977 788888873
No 151
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=62.82 E-value=20 Score=25.34 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=32.0
Q ss_pred HHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 117 ELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 117 ~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.+++.++|++|+.+....... ..-++.++.....|++|+...
T Consensus 58 ~~~~~~~pDfvI~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 58 DIAEDFEPDFIVYGGPNPAAPG----PSKAREMLADSEYPAVIIGDA 100 (283)
T ss_dssp HHHHHHCCSEEEEECSCTTSHH----HHHHHHHHHTSSSCEEEEEEG
T ss_pred hhhhhcCCCEEEEECCCCCCCC----chHHHHHHHhCCCCEEEEcCC
Confidence 4457889999999987544322 346788999999999998643
No 152
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=62.81 E-value=36 Score=23.77 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=48.7
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQ 85 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (167)
-+++|.+.+-.+|.-++..+ +.. +-+++.++...+...... . .. .
T Consensus 5 MKvvvl~SGGkDSs~al~~l----~~~---G~eV~~L~~~~~~~~~s~-~---------------------~h--~---- 49 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWA----IKN---RFSVKFLVTMVSENEESY-M---------------------YH--T---- 49 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHH----HHT---TCEEEEEEEEECC--------------------------------C----
T ss_pred CEEEEEecCcHHHHHHHHHH----HHc---CCeEEEEEEEcCCCCCcc-c---------------------cC--C----
Confidence 37999999998888665544 445 567877765433211000 0 00 0
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecC---hHhHHHHHHHHhCCCEEEEeec
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGD---AKEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~---~~~~I~~~a~~~~~dliV~g~~ 132 (167)
.-.+.+...++..|++....-..|. -.+.+.+..++.+++-+|.|.-
T Consensus 50 ~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 50 INANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp CSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred ccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 0011223344556777665544443 3556666677668888888864
No 153
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=62.76 E-value=37 Score=24.44 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh---HHHHHHHH-hCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE---KVCELVEK-LHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~---~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.|+.+......++... .|..+... .++|-||+.. ...... ..-..+....+||+++-
T Consensus 21 ~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~------~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 21 SYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAP------QILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHH------HHHHHHTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHH------HHHHHHHhCCCcEEEEc
Confidence 4455555666667887766544455543 33344444 6999999864 211111 11234567789999986
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 94 ~~ 95 (350)
T 3h75_A 94 SP 95 (350)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 154
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=62.56 E-value=28 Score=22.65 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCC-CCEEEE
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQ-CPVVVV 160 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~-~pVliv 160 (167)
.+.+.+.+.+.+.+.|+.+++.... |...+.|.+... +.|-||+.....+..+- -....+.... +|++=|
T Consensus 33 l~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~--~~dgiIINpgA~THtSv-----AlrDAl~~v~~~P~VEV 105 (156)
T 1gtz_A 33 LADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARL--NHCGIVINPAAYSHTSV-----AILDALNTCDGLPVVEV 105 (156)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHH--HCSEEEEECTTHHHHCH-----HHHHHHHTSTTCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh--cCcEEEECchhhccccH-----HHHHHHHhcCCCCEEEE
Confidence 5566677778888889888876533 556666665544 69999998665432221 2245566667 998877
Q ss_pred cC
Q 040308 161 KG 162 (167)
Q Consensus 161 ~~ 162 (167)
+-
T Consensus 106 Hi 107 (156)
T 1gtz_A 106 HI 107 (156)
T ss_dssp ES
T ss_pred Ee
Confidence 63
No 155
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=62.52 E-value=20 Score=28.17 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=27.3
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
++++|++.+-.+|.-++..+.+. . +.+++++|+-.
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~---G~~v~av~vd~ 265 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---I---GDQLVCVLVDT 265 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---H---GGGEEEEEECC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---h---CCeEEEEEecc
Confidence 68999999999998777666543 4 56899999865
No 156
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=62.18 E-value=43 Score=24.36 Aligned_cols=74 Identities=7% Similarity=0.018 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+.++.+.+.+.. .+++-.-+-. +..+.| .+.+++.++|-+.+-........+--+-..-..|...++.||++..
T Consensus 69 ~vi~~~~~~~~g-rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 69 QVATRVTELVNG-RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp HHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHHhCC-CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 334444444332 3454444444 555544 4668888999998887654333221122233568888999999986
No 157
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=62.16 E-value=41 Score=24.12 Aligned_cols=52 Identities=10% Similarity=-0.002 Sum_probs=32.4
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-........+--+-..-..|...++.||++..
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (292)
T 2ojp_A 81 ATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYN 134 (292)
T ss_dssp SHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEC
T ss_pred cHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444 3556778999888877654332221122334568888899999975
No 158
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=62.13 E-value=36 Score=23.56 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=28.1
Q ss_pred HHHhhhcCCcEEEEEEec--C---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 92 LKICSEKNVNVKSEVVIG--D---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.+.+.|+++...-... + ..+++++..++.++|++|+...+
T Consensus 65 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 65 LERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChh
Confidence 355677888865421111 1 14678888999999999997653
No 159
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=62.07 E-value=36 Score=23.47 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
...+++.+.+.+.+.|..+......++.. ..+++.....++|-||+..... . .. -..+...++||+++-
T Consensus 22 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~-----~~-~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 22 STELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P-----QT-VQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H-----HH-HHHHHTTSSCEEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H-----HH-HHHHHHCCCCEEEEe
Confidence 34556666777778888776654444443 3556667778999999876543 1 12 234566789999986
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 93 ~~ 94 (276)
T 3jy6_A 93 RE 94 (276)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 160
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=62.06 E-value=21 Score=24.08 Aligned_cols=48 Identities=8% Similarity=-0.029 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe-cChHhHHHHHHHHhCCCEEEEeecC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI-GDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.+.+.+.+.+++.|.+++..-+. ++..+.+.+... .+|.||++++-
T Consensus 32 ~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~ 80 (204)
T 2amj_A 32 NDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHH--hCCEEEEECCc
Confidence 3445555555556567777766554 344566666666 89999999875
No 161
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=62.03 E-value=51 Score=25.23 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
|-++++|++.+--+|.-++.++.+ . +.+++.+++...
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke----~---G~eViavt~d~G 49 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCE----K---GFDVIAYVANVG 49 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHH----T---TCEEEEEEEESS
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHH----C---CCeEEEEEEEcC
Confidence 457899999999888877766644 3 568988888653
No 162
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=61.99 E-value=20 Score=20.53 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=36.6
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGKG 164 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~~ 164 (167)
...+...|.++. ...+ .++..+..++..+|++++...-.+ ... -...+.+-.. ..+|++++-...
T Consensus 18 ~~~l~~~g~~v~---~~~~-~~~~~~~l~~~~~dlii~d~~~~~-~~~---~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 18 CEMLTAAGFKVI---WLVD-GSTALDQLDLLQPIVILMAWPPPD-QSC---LLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp HHHHHHTTCEEE---EESC-HHHHHHHHHHHCCSEEEEECSTTC-CTH---HHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred HHHHHhCCcEEE---EecC-HHHHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhccccCCCCEEEEeCCC
Confidence 334444565432 2223 455556667779999999976432 211 1244555444 468998886543
No 163
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=61.78 E-value=30 Score=25.96 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHhccccCCCCC-eEEEEEEeC
Q 040308 14 GGEESMDALRWAIDNLKLRSPAPG-SFIVLHVQP 46 (167)
Q Consensus 14 ~s~~s~~al~~a~~la~~~~~~~~-~l~~l~v~~ 46 (167)
....+++.+++|+++|++. +. +|+++|=-+
T Consensus 164 T~~~~eRIar~AFe~A~~r---~~kkVt~v~KaN 194 (364)
T 3flk_A 164 TRRGVDRILKYAFDLAEKR---ERKHVTSATKSN 194 (364)
T ss_dssp EHHHHHHHHHHHHHHHHHS---SSCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHhc---CCCeEEEEECcc
Confidence 3467899999999999988 55 688887433
No 164
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=61.74 E-value=24 Score=21.45 Aligned_cols=52 Identities=6% Similarity=0.089 Sum_probs=31.1
Q ss_pred ecChHhHHHHHHHH-hCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 108 IGDAKEKVCELVEK-LHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 108 ~g~~~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
..+..+.+..+.+. ..+|+||+...-.+ ..++ ...+.+-... .+||+++-..
T Consensus 51 ~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 51 TVGRAAQIVQRTDGLDAFDILMIDGAALD-TAEL---AAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp ECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred eCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHH---HHHHHHHHhCCCCcEEEEeCC
Confidence 34556666666666 79999999976432 2211 2334444333 4888888653
No 165
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=61.50 E-value=42 Score=24.07 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=33.2
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (294)
T 2ehh_A 80 ATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYN 133 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444 4667888999998887654332221112233567888899999975
No 166
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=60.97 E-value=28 Score=26.06 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 14 GGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 14 ~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
....+++.+++|+++|++. ..+|+++|=-+
T Consensus 168 T~~~~eRiar~AFe~A~~r---rkkVt~v~KaN 197 (363)
T 1cnz_A 168 HRFEIERIARIAFESARKR---RRKVTSIDKAN 197 (363)
T ss_dssp EHHHHHHHHHHHHHHHHTT---TSEEEEEECTT
T ss_pred cHHHHHHHHHHHHHHHHhc---CCeEEEEECCc
Confidence 3467899999999999988 77888887444
No 167
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=60.97 E-value=31 Score=25.81 Aligned_cols=29 Identities=10% Similarity=-0.013 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
...+++.+++|+++|++. ..+|+++|=-+
T Consensus 164 ~~~~eRiar~AFe~A~~r---rkkVt~v~KaN 192 (358)
T 1a05_A 164 EDEIRRIAHVAFRAAQGR---RKQLCSVDKAN 192 (358)
T ss_dssp HHHHHHHHHHHHHHHHTT---TSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhc---CCeEEEEECCc
Confidence 366899999999999988 77888887444
No 168
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=60.92 E-value=24 Score=21.15 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=29.3
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.++.++...+..+|+|++...-.+..... ...+.+-....+|++++-..
T Consensus 43 ~~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 43 GEEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 45555666677899999997643112221 23344443356999988654
No 169
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=60.90 E-value=14 Score=24.98 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=37.5
Q ss_pred hhcCCcEEEEEEecChHhHHHHHHHHhC--CCEEEEeecCC---CccceecccchhHHHH-hcCCCCEEEEcC
Q 040308 96 SEKNVNVKSEVVIGDAKEKVCELVEKLH--ADLLVMGSHTF---GPIKRMFLGSVSNYCA-NHAQCPVVVVKG 162 (167)
Q Consensus 96 ~~~~~~~~~~v~~g~~~~~I~~~a~~~~--~dliV~g~~~~---~~~~~~~~gs~~~~i~-~~~~~pVliv~~ 162 (167)
.+.|+++... .++ .+..+.++.. +|.+++|+.+- +.+-. -.|+..-.++ ++.++|++++-+
T Consensus 27 ~~~gI~vtlI--~Ds---a~~~~m~~~~~~Vd~VivGAd~v~~nG~v~n-kiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 27 VYDKIPSTLI--TDS---SIAYRIRTSPIPIKAAFVGADRIVRNGDTAN-KIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHHTCCBEEB--CGG---GHHHHHHHCSSCEEEEEECCSEECTTSCEEE-ETTHHHHHHHHHHHTCEEEEECC
T ss_pred HHcCCCEEEE--ech---HHHHHHHhCCCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 4558887653 222 3334445456 99999999763 22322 2566655555 666899999843
No 170
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=60.77 E-value=43 Score=23.98 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.+.+.... .+++-.-+-..+..+.| .+.+++.++|-+.+-........+--+-..-..|...++.||++..
T Consensus 57 ~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (292)
T 2vc6_A 57 QVVEITIKTANG-RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYN 133 (292)
T ss_dssp HHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 334444444332 34443333223444444 4668888999998887654332221112233568888899999975
No 171
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=60.76 E-value=32 Score=25.87 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=38.7
Q ss_pred hhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC---CCccceecccchhHHHH-hcCCCCEEEEcC
Q 040308 95 CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT---FGPIKRMFLGSVSNYCA-NHAQCPVVVVKG 162 (167)
Q Consensus 95 ~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~---~~~~~~~~~gs~~~~i~-~~~~~pVliv~~ 162 (167)
+.+.|+++... .++ .+..+.++..+|.||+|+.+ .+.+-.. .|+..-.++ ++.++|++++-+
T Consensus 229 L~~~GIpvtlI--~Ds---a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NK-iGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 229 LMQGGIDVTLI--TDS---MAAHTMKEKQISAVIVGADRIAKNGDTANK-IGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHTTTCEEEEE--CGG---GHHHHHHHTTCCEEEECCSEEETTCCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHcCCCEEEE--ehh---HHHHHhhhcCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcCCCEEEecc
Confidence 45668887653 222 33344555679999999985 2323332 566555555 667799999843
No 172
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=60.38 E-value=25 Score=21.20 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=35.3
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
...+...|..+. ...+ ..+.++..++..+|+||+.. -.+ .... ...+.+-... .+||+++-..
T Consensus 21 ~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~-~~~-~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 21 KNALEKDGFNVI---WAKN-EQEAFTFLRREKIDLVFVDV-FEG-EESL---NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHGGGTCEEE---EESS-HHHHHHHHTTSCCSEEEEEC-TTT-HHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHhCCCEEE---EECC-HHHHHHHHhccCCCEEEEeC-CCC-CcHH---HHHHHHHHHCCCCCEEEEECC
Confidence 344445565432 2233 45556667778999999997 322 2221 2334444333 4899888544
No 173
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=60.34 E-value=49 Score=24.44 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=33.1
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 111 st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 164 (343)
T 2v9d_A 111 NARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYN 164 (343)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444 4668888999998887654322221112233568888899999975
No 174
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=60.25 E-value=21 Score=23.78 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=8.6
Q ss_pred HHHHHHHHhCCCEEEEe
Q 040308 114 KVCELVEKLHADLLVMG 130 (167)
Q Consensus 114 ~I~~~a~~~~~dliV~g 130 (167)
.+++.+++.++|+||+.
T Consensus 23 ~~~~~~~~~~~D~vi~~ 39 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALI 39 (228)
T ss_dssp HHHTHHHHHTCSEEEEE
T ss_pred HHHHHHhhcCCCEEEEC
Confidence 44444444456655554
No 175
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=60.25 E-value=44 Score=23.90 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=33.3
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 80 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (289)
T 2yxg_A 80 CTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYN 133 (289)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444 4667888999998887654333221122333568888899999975
No 176
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=59.89 E-value=53 Score=24.69 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=57.8
Q ss_pred EEEEeecCChhHHHHHHHHHHhccccCCCCC---------e-----EEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchH
Q 040308 7 CVIVAVDGGEESMDALRWAIDNLKLRSPAPG---------S-----FIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAF 72 (167)
Q Consensus 7 ~ILv~id~s~~s~~al~~a~~la~~~~~~~~---------~-----l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (167)
+|=|.+.....|....+.+..+.+.+ +. . =.++|+..+.++.
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~y---g~~pn~~~l~~~~s~~iG~I~~~~~pd~F~--------------------- 69 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEY---EEENKIDKDKDGQTKVKQTIKHVVLPENFT--------------------- 69 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHH---HHHTTCCC-----CCCCEEEEEEECCTTGG---------------------
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHh---CCCcccchhcccccccceEEEEeccCCCch---------------------
Confidence 67777877778888888888888777 43 1 2477775444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeec
Q 040308 73 TAAIEAHQGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~ 132 (167)
.+.....+.+...+...++.+-.......-....++.+++.++|.|+++..
T Consensus 70 ---------se~~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 70 ---------SNIDSAINKIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp ---------GGHHHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred ---------HHHHHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 123334566667766666554222222222356678888889998887754
No 177
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=59.77 E-value=26 Score=21.08 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=27.6
Q ss_pred HhHHHHHHHH-hCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEc
Q 040308 112 KEKVCELVEK-LHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVK 161 (167)
Q Consensus 112 ~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~ 161 (167)
..+.++..++ ..+|++++...-.+ ..+. ...+.+-... .+|++++-
T Consensus 48 ~~~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 48 GSAFFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEE
Confidence 4455566666 78999999876432 2211 2344444333 58998886
No 178
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=59.70 E-value=31 Score=25.90 Aligned_cols=29 Identities=14% Similarity=-0.009 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
...+++.+++|+++|++. ..+|+++|=-+
T Consensus 173 r~~~eRIar~AFe~A~~r---rkkVt~v~KaN 201 (366)
T 1vlc_A 173 RKTVERIARTAFEIAKNR---RKKVTSVDKAN 201 (366)
T ss_dssp HHHHHHHHHHHHHHHHTT---TSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHc---CCeEEEEECCc
Confidence 367899999999999998 77888887444
No 179
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=59.68 E-value=46 Score=23.94 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.+.+.+.. .+++-.-+-..+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 57 ~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (297)
T 2rfg_A 57 RVVALVAEQAQG-RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYN 133 (297)
T ss_dssp HHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHhCC-CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 334444444332 34443322222444444 4668888999998887654333221112233567888899999975
No 180
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=59.68 E-value=33 Score=25.89 Aligned_cols=62 Identities=13% Similarity=0.241 Sum_probs=38.9
Q ss_pred hhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC---CccceecccchhHHHH-hcCCCCEEEEcC
Q 040308 95 CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF---GPIKRMFLGSVSNYCA-NHAQCPVVVVKG 162 (167)
Q Consensus 95 ~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~---~~~~~~~~gs~~~~i~-~~~~~pVliv~~ 162 (167)
+.+.|+++.... ++ .+..+.++..+|.||+|+.+- +.+-.. .|+..-.++ ++.++|++|+-+
T Consensus 233 L~~~GIpvtlI~--Ds---a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NK-iGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 233 CVQEDIPCTLIC--DG---AASSLMLNRKIDAVVVGADRICQNGDTANK-IGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHTTCCEEEEC--GG---GHHHHHHHSCCCEEEECCSEECTTCCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHcCCCEEEEe--hh---HHHHHhhcCCCCEEEECccEEecCCCEeec-ccHHHHHHHHHHcCCCEEEeCC
Confidence 345688876542 22 333445556799999999852 223332 566655555 667799999844
No 181
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=59.58 E-value=33 Score=25.52 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred hhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC---CccceecccchhHHHH-hcCCCCEEEEcC
Q 040308 95 CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF---GPIKRMFLGSVSNYCA-NHAQCPVVVVKG 162 (167)
Q Consensus 95 ~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~---~~~~~~~~gs~~~~i~-~~~~~pVliv~~ 162 (167)
+.+.|+++.... ++ .+..+.++..+|.||+|+.+- +..-.. .|+..-.++ ++.++|++++-+
T Consensus 204 L~~~GI~vtlI~--Ds---a~~~~M~~~~Vd~VivGAd~V~aNG~v~NK-iGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 204 LMKDGIEVYVIT--DN---MAGWLMKRGLIDAVVVGADRIALNGDTANK-IGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHTTTCEEEEEC--GG---GHHHHHHTTCCSEEEECCSEEETTSCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHhCCCCEEEEe--hh---HHHHHhhcCCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcCCCEEEecc
Confidence 455688876532 22 333445556799999999862 223332 566555555 667799999843
No 182
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=59.44 E-value=43 Score=23.51 Aligned_cols=38 Identities=5% Similarity=-0.103 Sum_probs=28.3
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
+.+++|++.+..+|...+..+..+... +.++.++|+-.
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~----~~~i~vv~iDt 78 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK----YYMPELLFIDT 78 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT----SCCCEEEEECC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc----CCCeeEEEecC
Confidence 467999999999999888887766442 13677788754
No 183
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=59.42 E-value=42 Score=24.79 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 14 GGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 14 ~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
....+++.+++|+++|++.+ ..+|+++|=-+
T Consensus 142 T~~~~eRiar~AF~~A~~r~--rkkvt~v~KaN 172 (333)
T 1x0l_A 142 SKKASERIGRAALRIAEGRP--RKTLHIAHKAN 172 (333)
T ss_dssp EHHHHHHHHHHHHHHHHTST--TCEEEEEECTT
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCeEEEEecCc
Confidence 34668999999999999872 35788887433
No 184
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=59.22 E-value=39 Score=23.01 Aligned_cols=42 Identities=7% Similarity=0.051 Sum_probs=28.0
Q ss_pred HHHhhhcCCcEEEEEEec--C---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 92 LKICSEKNVNVKSEVVIG--D---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.+.+.|+++...-... + ..+++.+..++.++|++|+...+
T Consensus 46 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 46 IERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh
Confidence 355677888875421111 1 13578888999999999997653
No 185
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=59.01 E-value=27 Score=21.04 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=30.2
Q ss_pred hHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcCC
Q 040308 111 AKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKGK 163 (167)
Q Consensus 111 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~~ 163 (167)
-.++.++.+++..+|+||+...-.+ ..+. ...+.+-. ...+||+++-..
T Consensus 39 ~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 39 SGGQCIDLLKKGFSGVVLLDIMMPG-MDGW---DTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp SHHHHHHHHHTCCCEEEEEESCCSS-SCHH---HHHHHHHHTTCCTTEEEEEEECT
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCCEEEEECC
Confidence 3456666777778999999976432 2211 23444544 245899988654
No 186
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=58.87 E-value=30 Score=22.46 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.+.|+.+++.... |...+.|-+.. .++|-||+.....+..+- -....+...++|++=|+
T Consensus 34 l~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~--~~~dgiiINpgA~THtSv-----AlrDAl~~~~~P~VEVH 106 (153)
T 3lwz_A 34 LAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQAR--GNTDFILINPAAFTHTSV-----ALRDALLGVQIPFIEIH 106 (153)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHT--TTCSEEEEECGGGGGTCH-----HHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh--hcCceEEEccccceechH-----HHHHHHHhcCCCEEEEE
Confidence 4555666667777788877765422 44555555432 479999998665432221 12344556789988776
Q ss_pred C
Q 040308 162 G 162 (167)
Q Consensus 162 ~ 162 (167)
-
T Consensus 107 i 107 (153)
T 3lwz_A 107 L 107 (153)
T ss_dssp S
T ss_pred c
Confidence 3
No 187
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=58.82 E-value=33 Score=25.68 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 16 EESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 16 ~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
..+++.+++|+++|++. ..+|+++|=-+
T Consensus 163 ~~~eRIar~AFe~A~~r---rkkVt~v~KaN 190 (359)
T 2y3z_A 163 PEVERVARVAFEAARKR---RKHVVSVDKAN 190 (359)
T ss_dssp HHHHHHHHHHHHHHHTT---TSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHc---CCeEEEEECCc
Confidence 56899999999999988 77888887444
No 188
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=58.64 E-value=42 Score=24.03 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.+.+.+.. .+++-.-+-..+..+.| .+.+++.++|-+.+-........+--+-..-..|...++.||++..
T Consensus 58 ~v~~~~~~~~~g-r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3a5f_A 58 ETIKFVIDKVNK-RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYN 134 (291)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344444444332 34433322222444444 4667888999998887654322221111122346667889999875
No 189
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=58.62 E-value=15 Score=23.25 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=36.4
Q ss_pred cCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeec--CCCc-cceecccchhHHHHhcCCCCEE
Q 040308 98 KNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSH--TFGP-IKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 98 ~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~--~~~~-~~~~~~gs~~~~i~~~~~~pVl 158 (167)
.|++++...... .-...|.+..++..+|+||--.. +..+ .. -|....+....-++|++
T Consensus 48 ~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~---D~~~IrR~A~~~~IP~~ 109 (134)
T 2xw6_A 48 TGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPLTAQPHEP---DVQALLRVCDVHGVPLA 109 (134)
T ss_dssp HCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTTTCCTTSC---CSHHHHHHHHHHTCCEE
T ss_pred hCceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcccCCCccc---hHHHHHHHHHHcCCCeE
Confidence 588887653211 12357999999999999999876 4332 22 23445555555567765
No 190
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=58.61 E-value=27 Score=20.94 Aligned_cols=45 Identities=4% Similarity=-0.031 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 115 VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 115 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
.++..++..+|+|++...-.. ..++ ...+.+-... .+||+++-..
T Consensus 51 a~~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 51 LKGPPADTRPGIVILDLGGGD-LLGK---PGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp GGCCCTTCCCSEEEEEEETTG-GGGS---TTHHHHHGGGTTCCEEEEESC
T ss_pred HHHHHhccCCCEEEEeCCCCC-chHH---HHHHHHHhhCCCCcEEEEeCC
Confidence 344446678999999976433 2221 2444554444 5899988654
No 191
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=58.58 E-value=53 Score=24.27 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+++.+.+.+.+.+.+++++..-........+..... ++|.||+|+.-
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~--~~d~iiigsP~ 317 (404)
T 2ohh_A 271 RKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDIL--ESGAIALGAPT 317 (404)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHH--TCSEEEEECCE
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECcc
Confidence 344444455555567666554443434455555555 89999999874
No 192
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=58.55 E-value=43 Score=23.20 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++.. ..++.....++|-||+......... ...+ .+....+||+++-.
T Consensus 18 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 18 TLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV-----TAIK-EANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH-----HHHH-HHHHCCCeEEEecC
Confidence 3445555556666776544333344433 3344455678999988643222111 1222 34556899988854
No 193
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=58.42 E-value=23 Score=23.01 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=36.5
Q ss_pred cCCcEEEEEEecC--hHhHHHHHHHHhCCCEEEEeec--CCCccceecccchhHHHHhcCCCCEE
Q 040308 98 KNVNVKSEVVIGD--AKEKVCELVEKLHADLLVMGSH--TFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 98 ~~~~~~~~v~~g~--~~~~I~~~a~~~~~dliV~g~~--~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
.|++++... .+. -...|.+..++..+|+||--.. +..+- .--|....+....-++|++
T Consensus 56 ~Gl~v~~v~-k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h--~~D~~~IrR~A~~~~IP~~ 117 (152)
T 1b93_A 56 TGMNVNAML-SGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPH--DPDVKALLRLATVWNIPVA 117 (152)
T ss_dssp HCCCCEEEC-CGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTT--HHHHHHHHHHHHHTTCCEE
T ss_pred hCceeEEEE-ecCCCCCchHHHHHHCCCccEEEEcCCcccCCcc--cccHHHHHHHHHHcCCCEE
Confidence 688887653 221 2357999999999999999876 33220 1123444555555567764
No 194
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=58.42 E-value=34 Score=22.08 Aligned_cols=73 Identities=14% Similarity=-0.016 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.+.|+.+++.... |...+.|-+. ...+.|-||+.....+..+- -....+...++|++=|+
T Consensus 26 l~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a-~~~~~dgiIINpgA~THtSv-----AlrDAl~~v~~P~VEVH 99 (149)
T 2uyg_A 26 LEELEALCEAWGAELGLGVVFRQTNYEGQLIEWVQQA-HQEGFLAIVLNPGALTHYSY-----ALLDAIRAQPLPVVEVH 99 (149)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHT-TTTTCSEEEEECGGGGGTCH-----HHHHHHHTSCSCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHh-ccCCeeEEEEccchhccccH-----HHHHHHHhCCCCEEEEE
Confidence 4455666677778888887765422 3444444333 22238999998655433221 23567777889998776
Q ss_pred C
Q 040308 162 G 162 (167)
Q Consensus 162 ~ 162 (167)
-
T Consensus 100 i 100 (149)
T 2uyg_A 100 L 100 (149)
T ss_dssp S
T ss_pred e
Confidence 3
No 195
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=58.38 E-value=51 Score=24.00 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
++.+.+.+.... .+++-.-+-..+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 79 ~v~~~~v~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 155 (315)
T 3si9_A 79 RIIELCVEQVAK-RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYN 155 (315)
T ss_dssp HHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEe
Confidence 334444444332 34443332222444444 4678888999999887654333221122344678888999999985
No 196
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=58.21 E-value=46 Score=23.51 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=71.7
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQ 85 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (167)
...=|+..+-.......+..+.+|+.. + --+.-|.-.+....+.-.. ...++ ++......
T Consensus 24 tSANIACGfHAGDp~~M~~Tv~lA~~~---g-V~IGAHPgypDl~GFGRR~---------m~~s~-------~el~~~v~ 83 (252)
T 1xw8_A 24 SSANIACGFHAGDAQIMQACVREAIKN---G-VAIGAHPSFPDRENFGRSA---------MQLPP-------ETVYAQTL 83 (252)
T ss_dssp SEEEEECSSSSCCHHHHHHHHHHHHHH---T-CEEEEECCCC-------CC---------CCCCH-------HHHHHHHH
T ss_pred hhHHHhhcccCCCHHHHHHHHHHHHHc---C-CeeecCCCCCcccCCCCCC---------CCCCH-------HHHHHHHH
Confidence 334456666667778888999999988 3 3455665544432211110 00111 22223333
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEe----------cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVI----------GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQC 155 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~----------g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~ 155 (167)
..+-.+...++..|.++..+--. ...++.|.+.+...+.+|+++|..+ |...+..+....
T Consensus 84 YQiGAL~a~a~~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~g----------s~~~~~A~~~Gl 153 (252)
T 1xw8_A 84 YQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAG----------SELIRAGKQYGL 153 (252)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETT----------SHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC----------hHHHHHHHHcCC
Confidence 34556667778888887765332 2468899999999999999999653 233445555555
Q ss_pred CEE
Q 040308 156 PVV 158 (167)
Q Consensus 156 pVl 158 (167)
|++
T Consensus 154 ~~~ 156 (252)
T 1xw8_A 154 TTR 156 (252)
T ss_dssp CEE
T ss_pred cEE
Confidence 554
No 197
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=58.12 E-value=28 Score=21.39 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=29.8
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.++-++.+++..+|++++--.=++ ..++ .++ +.+++.++||+++-..
T Consensus 42 g~eAl~~~~~~~~DlvllDi~mP~-~~G~---el~-~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNLDG-EPSY---PVA-DILAERNVPFIFATGY 88 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSSSS-CCSH---HHH-HHHHHTCCSSCCBCTT
T ss_pred HHHHHHHHHhCCCCEEEEecCCCC-CCHH---HHH-HHHHcCCCCEEEEecC
Confidence 445556777889999999876433 2221 233 3455667999888643
No 198
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=57.92 E-value=50 Score=23.84 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=34.0
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-..-.....+--+-..-+.|...++.||++..
T Consensus 95 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 148 (304)
T 3l21_A 95 DTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYD 148 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444443 3678888999999987654333221122344678888999999985
No 199
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=57.70 E-value=31 Score=21.35 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=36.6
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
+...+...|..+. ...+ .++.++.+++..+|+|++...-.+ ..++ .+.+.+-.. ..+|++++-..
T Consensus 23 l~~~L~~~g~~v~---~~~~-~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 23 LKHILEETGYQTE---HVRN-GREAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHTTTCEEE---EESS-HHHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHCCCEEE---EeCC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEECC
Confidence 3344445565432 2233 455566677789999999976433 2211 233444433 45899888653
No 200
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=57.43 E-value=30 Score=24.61 Aligned_cols=70 Identities=6% Similarity=-0.026 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhcCCcEEEE-EEecChHhH--HHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 87 IIDHALKICSEKNVNVKSE-VVIGDAKEK--VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-v~~g~~~~~--I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+.+.+.+.+.|+++... ...+++..+ .++.....++|.||+......... ...+ .+....+||+.+-.
T Consensus 21 ~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~-----~~~~-~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 21 GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-----PALK-RAMQRGVKILTWDS 93 (316)
T ss_dssp HHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTH-----HHHH-HHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HHHH-HHHHCcCEEEEecC
Confidence 3444445555567655432 123455433 344455668999998765433221 1222 34567899998854
No 201
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=57.37 E-value=44 Score=23.22 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhc-CCcEEEEEEe---cChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 85 QAIIDHALKICSEK-NVNVKSEVVI---GDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~v~~---g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
..+.+.+.+.+.+. |..+...... +++. ..+++.+...++|-||+......... ... .-+...++||+
T Consensus 25 ~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~-~~~~~~~iPvV 98 (304)
T 3gbv_A 25 TDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK-----GFT-DALNELGIPYI 98 (304)
T ss_dssp HHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH-----HHH-HHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH-----HHH-HHHHHCCCeEE
Confidence 34455556666666 5555554332 2443 34456666779999998754322111 112 23455689999
Q ss_pred EEcCC
Q 040308 159 VVKGK 163 (167)
Q Consensus 159 iv~~~ 163 (167)
++-..
T Consensus 99 ~~~~~ 103 (304)
T 3gbv_A 99 YIDSQ 103 (304)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 98653
No 202
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=57.03 E-value=13 Score=23.61 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=38.0
Q ss_pred HhhhcCCcEEEEEE--ec-C--hHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 94 ICSEKNVNVKSEVV--IG-D--AKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 94 ~~~~~~~~~~~~v~--~g-~--~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
++++.|++++.... +| + ....|.+..++.++|+||--..+.... .--|...++..-..++|++
T Consensus 62 ~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~--~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 62 WLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKF--VHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGG--HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcC--CccHHHHHHHHHHhCCCeE
Confidence 44567888776532 22 2 004699999999999999876542111 1124445555555677775
No 203
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=57.02 E-value=14 Score=24.79 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCEEEEeecC
Q 040308 115 VCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 115 I~~~a~~~~~dliV~g~~~ 133 (167)
+.+... .+|.||+|++-
T Consensus 72 ~~~~l~--~aD~ii~gsP~ 88 (211)
T 1ydg_A 72 TPADLE--WAEAIVFSSPT 88 (211)
T ss_dssp CHHHHH--HCSEEEEEEEE
T ss_pred HHHHHH--HCCEEEEEcCc
Confidence 444444 79999999864
No 204
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=56.92 E-value=26 Score=21.15 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=28.9
Q ss_pred HhHHHHHHHH-hCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcCC
Q 040308 112 KEKVCELVEK-LHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~~ 163 (167)
.++.++.+++ ..+|+||+...-.+...+. .+.+.+-. ...+||+++-..
T Consensus 38 ~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 38 LKKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeCC
Confidence 4455566666 7999999987643122221 23344443 345899888654
No 205
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=56.83 E-value=47 Score=23.16 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhcCC-cEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNV-NVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~-~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|. .+......+++. ...++.....++|-||+........ ....+ .+....+||+++-.
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-----~~~~~-~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 19 VVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA-----GTVIE-KARGQNVPVVFFNK 92 (309)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH-----HHHHH-HHHTTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh-----HHHHH-HHHHCCCcEEEecC
Confidence 455666677777785 654443334443 3345555567899999864322111 11223 34567899998864
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 93 ~ 93 (309)
T 2fvy_A 93 E 93 (309)
T ss_dssp C
T ss_pred C
Confidence 3
No 206
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=56.55 E-value=33 Score=23.97 Aligned_cols=70 Identities=14% Similarity=0.023 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|+++...-. +++.+ ..++.....++|-||+......... ... ..+....+||+++-.
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~-~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 19 TEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGS-----AIV-AKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHH-----HHH-HHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhH-----HHH-HHHHHCCCcEEEeCC
Confidence 3445555556666766543322 34433 3445555568999998765332111 112 245567899999863
No 207
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=56.44 E-value=22 Score=24.87 Aligned_cols=46 Identities=17% Similarity=0.005 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCh-----------HhHHHHHHHHhCCCEEEEeecCC
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDA-----------KEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~-----------~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
+.+.+.+.+.+.|++++..-+..-+ ...+.+... .+|.||+++.-.
T Consensus 53 La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~--~AD~iI~~sP~Y 109 (247)
T 2q62_A 53 LAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSI--WSEGQVWVSPER 109 (247)
T ss_dssp HHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHH--HCSEEEEEEECS
T ss_pred HHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHH--HCCEEEEEeCCC
Confidence 3344444444567666654333322 455666666 899999998754
No 208
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=56.42 E-value=53 Score=23.66 Aligned_cols=52 Identities=8% Similarity=0.104 Sum_probs=33.2
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 92 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (301)
T 1xky_A 92 NTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYN 145 (301)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444 4667888999988887654332221112233568888999999975
No 209
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=56.35 E-value=54 Score=23.69 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+.++.+.+.+.. .+++-.-+-..+..+.| .+.+++.++|-+.+-........+--+-..-..|...++.||++..
T Consensus 69 ~vi~~~~~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (306)
T 1o5k_A 69 KLVSRTLEIVDG-KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYN 145 (306)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred HHHHHHHHHhCC-CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344444444332 34443322222444444 4668888999998887654333221112334568888899999975
No 210
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=56.30 E-value=52 Score=23.55 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=32.9
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-........+--+-..-..|...++.||++..
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 137 (293)
T 1f6k_A 84 NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYS 137 (293)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 444443 4667888999998887654333221122334567788899999975
No 211
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=56.01 E-value=16 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=27.2
Q ss_pred HHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC
Q 040308 89 DHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+.+...++.++ .+....+.|+.+..=.. ..-++|++|+....
T Consensus 21 ~~~~~l~~~~~-~v~~v~LFGS~ArG~~~--~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 21 EIVEEVASSFP-NLEEVYIFGSRARGDYL--DTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHCT-TEEEEEEESHHHHSCCC--TTCCEEEEEEESSC
T ss_pred HHHHHHHHHcC-CccEEEEEeeeecCCCC--CCCCEEEEEEecCC
Confidence 33334444453 66778899987775433 33599999998654
No 212
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=55.99 E-value=47 Score=22.95 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++.. ..++.....++|-||+......... ...+ .+...++||+++-.
T Consensus 19 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 91 (290)
T 2fn9_A 19 VLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSI-----ANVK-RAKEAGIPVFCVDR 91 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHHH-HHHHCCCeEEEEec
Confidence 3455555666667876654433345433 3445555678999988643322111 1222 34556899998854
No 213
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=55.93 E-value=55 Score=23.63 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=32.9
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCC-CCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQ-CPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~-~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-........+--+-..-..|...++ .||++..
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 91 STAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 444444 466788899998888765433222111233356778888 9999975
No 214
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=55.80 E-value=34 Score=21.28 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=36.3
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcCCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKGKG 164 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~~~ 164 (167)
...+++.|... +....-..+-++..++..+|+|++...=++ ..++ .+.+.+=. ...+||+++-...
T Consensus 29 ~~~L~~~G~~~---v~~a~~g~~al~~~~~~~~DlillD~~MP~-mdG~---el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 29 KNLLRDLGFNN---TQEADDGLTALPMLKKGDFDFVVTDWNMPG-MQGI---DLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHTTCCC---EEEESSHHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHcCCcE---EEEECCHHHHHHHHHhCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCCCCeEEEEECCC
Confidence 34445567542 112222344456677789999999976443 2222 23343321 2458999886543
No 215
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=55.60 E-value=49 Score=23.30 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhcCCcEEEEEE-ecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 87 IIDHALKICSEKNVNVKSEVV-IGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~-~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+.+.+.+.+.+.|+++..... .+++.. ..++.....++|.||+......... ...+ .+....+||+.+-.
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 90 (313)
T 2h3h_A 18 VEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI-----PTIK-KALEMGIPVVTLDT 90 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHHH-HHHHCCCeEEEeCC
Confidence 344445555566766654322 234433 3445455568999998654322111 1222 34457899998854
No 216
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=55.47 E-value=22 Score=24.33 Aligned_cols=67 Identities=6% Similarity=0.041 Sum_probs=40.6
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEE--eecCCCccceecccchhHHHHhcC---CCCEEEE
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVM--GSHTFGPIKRMFLGSVSNYCANHA---QCPVVVV 160 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~--g~~~~~~~~~~~~gs~~~~i~~~~---~~pVliv 160 (167)
+...++..|.++.. +-..-|.+.+++.+.+.++|+|.+ ......... .+..+.+.+-... ++||++-
T Consensus 112 v~~~l~~~G~~Vi~-LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 112 VTTMLGANGFQIVD-LGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHTSCEEEE-CCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHCCCeEEE-cCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEE
Confidence 33455667766422 122358999999999999999999 544322222 1344555554443 4677664
No 217
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=55.19 E-value=50 Score=22.96 Aligned_cols=82 Identities=11% Similarity=0.030 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040308 17 ESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICS 96 (167)
Q Consensus 17 ~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (167)
.....++.++++|+.. +++...+|.-...... . .+...+...+.++.+.+.+.
T Consensus 81 ~~~~~~~~~i~~A~~l---G~~~v~~~~g~~~~~~--------------------~----~~~~~~~~~~~l~~l~~~a~ 133 (286)
T 3dx5_A 81 KTIEKCEQLAILANWF---KTNKIRTFAGQKGSAD--------------------F----SQQERQEYVNRIRMICELFA 133 (286)
T ss_dssp HHHHHHHHHHHHHHHH---TCCEEEECSCSSCGGG--------------------S----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCEEEEcCCCCCccc--------------------C----cHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888 7887776543221100 0 01122445556677777778
Q ss_pred hcCCcEEEEEEec---ChHhHHHHHHHHhCCC
Q 040308 97 EKNVNVKSEVVIG---DAKEKVCELVEKLHAD 125 (167)
Q Consensus 97 ~~~~~~~~~v~~g---~~~~~I~~~a~~~~~d 125 (167)
++|+.+-.+...+ ...+.+.+++++.+.+
T Consensus 134 ~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~ 165 (286)
T 3dx5_A 134 QHNMYVLLETHPNTLTDTLPSTLELLGEVDHP 165 (286)
T ss_dssp HTTCEEEEECCTTSTTSSHHHHHHHHHHHCCT
T ss_pred HhCCEEEEecCCCcCcCCHHHHHHHHHhcCCC
Confidence 8888766654433 2356667777765533
No 218
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=55.15 E-value=51 Score=23.09 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+.+.+.+.+.+.|..+......+++.. ..++.....++|-||+......... ...+ .+....+||+++-.
T Consensus 20 ~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 91 (306)
T 2vk2_A 20 ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWE-----PVLK-EAKDAEIPVFLLDR 91 (306)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHH-----HHHH-HHHHCCCCEEEecC
Confidence 344455555666776654433344433 3455555678999998654322111 1222 34556899998854
No 219
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=54.95 E-value=18 Score=24.42 Aligned_cols=34 Identities=9% Similarity=-0.005 Sum_probs=26.6
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEE
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVL 42 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l 42 (167)
-++|++++.++..+..+++..-.|.+ . +.+++++
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~---g~~V~vv 41 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-F---FKEIRVV 41 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-T---SSEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-C---CCEEEEE
Confidence 37999999999988888887766644 5 5777766
No 220
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=54.79 E-value=74 Score=24.79 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=26.8
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
++++|++.+..+|.-++..+.+. +.+++++|+-.
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~-------g~~v~av~vd~ 243 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA-------GVDHLAVFVDH 243 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH-------TCEEEEEEEEC
T ss_pred ccEEEEecCCcchHHHHHHHHHc-------CCeEEEEEEeC
Confidence 68999999999998777666553 35899999865
No 221
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=54.47 E-value=58 Score=23.50 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=32.9
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-..-.....+--+-..-..|...++.||++..
T Consensus 96 st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 149 (304)
T 3cpr_A 96 NTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYD 149 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444 4668888999988887654322221112233567888899999975
No 222
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=54.37 E-value=41 Score=25.02 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=38.6
Q ss_pred hhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC--CccceecccchhHHHH-hcCCCCEEEEcC
Q 040308 95 CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF--GPIKRMFLGSVSNYCA-NHAQCPVVVVKG 162 (167)
Q Consensus 95 ~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~--~~~~~~~~gs~~~~i~-~~~~~pVliv~~ 162 (167)
+.+.|+++.... + ..+..+.++..+|.||+|+.+- ++.-. -.|+..-.++ ++.++|++++-+
T Consensus 202 L~~~GI~vtlI~--D---sa~~~~M~~~~Vd~VivGAd~V~aNGv~N-KiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 202 LMEDGIDVTLIT--D---SMVGIVMQKGMVDKVIVGADRIVRDAVFN-KIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHTTCCEEEEC--G---GGHHHHHHTTCCSEEEECCSEEETTEEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHhCCCCEEEEe--h---hHHHHHhhcCCCCEEEECccchhhcCccc-ccCHHHHHHHHHHcCCCEEEeCc
Confidence 355688876542 2 2334445556799999999862 22322 2566555555 667799999843
No 223
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=54.14 E-value=37 Score=25.54 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCh----HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDA----KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~----~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+++.+.+.+ ++.+.+....+++ .+.+.+.+++.++|.|| |-.|.+. ..++..+.....+|++.||.
T Consensus 67 ~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~II-avGGGs~------~D~AK~iA~~~~~p~i~IPT 138 (387)
T 3uhj_A 67 LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILV-GVGGGKT------ADTAKIVAIDTGARIVIAPT 138 (387)
T ss_dssp HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEE-EESSHHH------HHHHHHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEE-EeCCcHH------HHHHHHHHHhcCCCEEEecC
Confidence 45666666777 8777444455544 45556667788999754 4333221 23445555556899999997
Q ss_pred CC
Q 040308 163 KG 164 (167)
Q Consensus 163 ~~ 164 (167)
..
T Consensus 139 Ta 140 (387)
T 3uhj_A 139 IA 140 (387)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 224
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=54.12 E-value=23 Score=23.02 Aligned_cols=72 Identities=8% Similarity=0.083 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.+.|+.+++.... |...+.|.+.. .+.|-||+-....+..+- -....+...++|++=|+
T Consensus 28 l~di~~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~--~~~dgiIINpgA~THtSv-----AlrDAl~~v~~P~VEVH 100 (154)
T 1uqr_A 28 LSDIEQHLQQSAQAQGYELDYFQANGEESLINRIHQAF--QNTDFIIINPGAFTHTSV-----AIRDALLAVSIPFIEVH 100 (154)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTT--TTCCEEEEECTTHHHHCH-----HHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhh--hcCcEEEECcchhccchH-----HHHHHHHhCCCCEEEEE
Confidence 4455666677778888877765322 34444444332 369999998665432221 22456666788988776
Q ss_pred C
Q 040308 162 G 162 (167)
Q Consensus 162 ~ 162 (167)
-
T Consensus 101 i 101 (154)
T 1uqr_A 101 L 101 (154)
T ss_dssp S
T ss_pred e
Confidence 3
No 225
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=54.07 E-value=60 Score=23.57 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
++.+.+.+.... .+++-.-+-..+..+.| .+.+++.++|-+.+...-.....+--+-..-+.|...++.||++..
T Consensus 80 ~v~~~~v~~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 156 (314)
T 3qze_A 80 QVIRRVVDQVKG-RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYN 156 (314)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 334444444332 24443322222444444 3668888999999987644333221122344678888999999985
No 226
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=53.64 E-value=22 Score=24.86 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEecCh----HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 106 VVIGDA----KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 106 v~~g~~----~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+..|+| ..++++.+.+.++|+|.+|-.........+ ...+.+ +..+.|+++.+-.
T Consensus 12 it~gDP~~~~t~~~~~~l~~~GaD~IelG~S~g~t~~~~~--~~v~~i-r~~~~Pivl~~y~ 70 (234)
T 2f6u_A 12 ITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVTYEKAR--TLIEKV-SQYGLPIVVEPSD 70 (234)
T ss_dssp EEEECTTSCCCHHHHHHHHTTTCSEEEECCCTTCCHHHHH--HHHHHH-TTSCCCEEECCSS
T ss_pred EEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHh-cCCCCCEEEecCC
Confidence 455655 345677778889999999964222233222 344444 3468999998754
No 227
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=53.55 E-value=49 Score=22.84 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhhcCCc-EEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 84 TQAIIDHALKICSEKNVN-VKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
...+.+.+.+.+.+.|.. +......++.. ..+++.....++|-||+.. ..+ + -+...++||+++
T Consensus 25 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~---------~-~~~~~~iPvV~~ 91 (277)
T 3hs3_A 25 YAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FTI---------P-PNFHLNTPLVMY 91 (277)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCC---------C-TTCCCSSCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHH---------H-HHHhCCCCEEEE
Confidence 344566666777778887 55443334443 3456667778999999876 111 1 135668999888
Q ss_pred cCC
Q 040308 161 KGK 163 (167)
Q Consensus 161 ~~~ 163 (167)
-..
T Consensus 92 ~~~ 94 (277)
T 3hs3_A 92 DSA 94 (277)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 228
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=53.48 E-value=59 Score=23.26 Aligned_cols=75 Identities=11% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.+.+.... .+++-.-+-..+..+.| .+.+++.++|-+.+-..-.....+--+-..-+.|...++.||++..
T Consensus 58 ~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3tak_A 58 QVIKEIIRVANK-RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYN 134 (291)
T ss_dssp HHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344444444332 24443322222444444 3578888999999887654332221122344678888999999985
No 229
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=53.30 E-value=38 Score=22.10 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCcEEEEEEecChHhHHHHHH----HHhCCCEEEEe
Q 040308 90 HALKICSEKNVNVKSEVVIGDAKEKVCELV----EKLHADLLVMG 130 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a----~~~~~dliV~g 130 (167)
.+.+.+.+.|+++.....-+|-.+.|.+.. ...++|+||..
T Consensus 44 ~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 44 IIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 345666778988877666665555554433 33578988875
No 230
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=53.22 E-value=46 Score=22.84 Aligned_cols=46 Identities=20% Similarity=0.076 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeecC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.+.+.+.++..|.+++..-... .-.++..+... .+|.||++.+-
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~~~P~ 93 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQGYDIESEIENYL--WADTIIYQMPA 93 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH--hCCEEEEECCh
Confidence 344555555556677777665543 22344455555 89999999875
No 231
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=52.94 E-value=44 Score=21.69 Aligned_cols=26 Identities=8% Similarity=0.256 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCEEEEeecCCCccce
Q 040308 114 KVCELVEKLHADLLVMGSHTFGPIKR 139 (167)
Q Consensus 114 ~I~~~a~~~~~dliV~g~~~~~~~~~ 139 (167)
...+++++.++|.+|.|.+..+.+..
T Consensus 75 l~~~~~~~~~~~~~v~G~r~~~Df~~ 100 (162)
T 4f3r_A 75 LLVDFAKTHQANFILRGLRAVSDFDY 100 (162)
T ss_dssp CHHHHHHHTTCCEEEEEECSHHHHHH
T ss_pred hHHHHHHHcCCCEEEECCCchhhhhh
Confidence 34578888999999999876555543
No 232
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=52.80 E-value=63 Score=23.39 Aligned_cols=34 Identities=21% Similarity=0.066 Sum_probs=25.3
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEe
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQ 45 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~ 45 (167)
...+++|.+.+ -+|.-++- ++... +.+++.+|..
T Consensus 178 ~~~kvlvllSG-vDS~vaa~----ll~~~---G~~v~~v~~~ 211 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIF----LMMKR---GVEVIPVYIG 211 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHH----HHHHB---TCEEEEEEES
T ss_pred CCCcEEEEEeC-CcHHHHHH----HHHhC---CCeEEEEEEE
Confidence 44689999999 88864443 34445 7899999987
No 233
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=52.47 E-value=37 Score=20.59 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=29.7
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~~ 163 (167)
.++.++.+++..+|+||+...-.. ..+. ...+.+-. ...+||+++-..
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPK-ISGM---DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEeCC
Confidence 455566667779999999976432 2211 24455544 345999988654
No 234
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=52.27 E-value=25 Score=23.58 Aligned_cols=33 Identities=6% Similarity=-0.020 Sum_probs=25.5
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEE
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVL 42 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l 42 (167)
++|++++.++..+..+++..-.|.+ . +.+++++
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~-~---g~~V~vv 34 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEE-L---DFSVDLV 34 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHH-T---TCEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH-C---CCEEEEE
Confidence 7999999999888888877766643 4 4677665
No 235
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=52.20 E-value=21 Score=25.83 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE-Ec
Q 040308 115 VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV-VK 161 (167)
Q Consensus 115 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli-v~ 161 (167)
+++.+.+.+.|.|++|+.+-+.+... ...+...+=+..+.||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECC
Confidence 55666677899999994433322332 345566666668999999 88
No 236
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=52.15 E-value=32 Score=22.99 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=37.0
Q ss_pred cCCcEEEEEEecC--hHhHHHHHHHHhCCCEEEEeec--CCCccceecccchhHHHHhcCCCCEE
Q 040308 98 KNVNVKSEVVIGD--AKEKVCELVEKLHADLLVMGSH--TFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 98 ~~~~~~~~v~~g~--~~~~I~~~a~~~~~dliV~g~~--~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
.|++++... .+. -...|.+..++..+|+||--.. +..+-. --|....+....-++|++
T Consensus 72 ~Gl~v~~v~-k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~--~D~~~IRR~A~~~~IP~~ 133 (178)
T 1vmd_A 72 LGLKVHRLK-SGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHD--VDVKALIRIATVYNIPVA 133 (178)
T ss_dssp HCCCCEECS-CGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTS--CCHHHHHHHHHHTTCCEE
T ss_pred hCceeEEEe-ecCCCCCchHHHHHHCCCccEEEEccCccCCCccc--ccHHHHHHHHHHcCCCEE
Confidence 688887652 221 2357999999999999999876 433211 124455566666667765
No 237
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=51.76 E-value=43 Score=21.79 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHH----hCCCEEEEe
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEK----LHADLLVMG 130 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 130 (167)
+.+.+.+.|..+.....-+|-.+.|.+..++ .++|+||..
T Consensus 36 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3344556687766655555444444444332 378998874
No 238
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=51.71 E-value=30 Score=24.22 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=34.1
Q ss_pred EEecChHh----HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCCC
Q 040308 106 VVIGDAKE----KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGKG 164 (167)
Q Consensus 106 v~~g~~~~----~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~~ 164 (167)
+..++|.+ +.++.+.+.+.|.|.+|-...-..... -.+.+.|-+ .+.|+++.|...
T Consensus 15 ~~~~DPdk~~~~~~l~~~~~~GtDaI~vGgs~gvt~~~~--~~~v~~ik~-~~~Piil~p~~~ 74 (235)
T 3w01_A 15 IFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNV--IHLMSKIRR-YPLPLVLEISNI 74 (235)
T ss_dssp EEEECTTSCCCHHHHHHHHTSSCSEEEECCSSCCCHHHH--HHHHHHHTT-SCSCEEEECCCS
T ss_pred EEeECCCCcCCHHHHHHHHHcCCCEEEECCcCCcCHHHH--HHHHHHhcC-cCCCEEEecCCH
Confidence 34445433 355556677899999997542223322 234444444 889999998753
No 239
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=51.53 E-value=80 Score=24.27 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh-H---HHHHHHHhCCCEEE-EeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE-K---VCELVEKLHADLLV-MGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~-~---I~~~a~~~~~dliV-~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
...+++.+.+.+.|+.+...+..|++.. . +.+.+++ ++|+|| +|.... ..++..+.....+|++.|
T Consensus 105 ~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv--------iD~AK~iA~~~giP~I~I 175 (450)
T 1ta9_A 105 ICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT--------MDSAKYIAHSMNLPSIIC 175 (450)
T ss_dssp HTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH--------HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH--------HHHHHHHHHhcCCCEEEE
Confidence 3566777777777887754556676544 2 3333445 788877 553221 233444444567999999
Q ss_pred cCCC
Q 040308 161 KGKG 164 (167)
Q Consensus 161 ~~~~ 164 (167)
|...
T Consensus 176 PTTA 179 (450)
T 1ta9_A 176 PTTA 179 (450)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9764
No 240
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=51.52 E-value=20 Score=23.61 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=28.5
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
|+.|+ +||+....+..+..+++...+-+... +.++.++.+.+.
T Consensus 1 M~~mm-kilii~~S~g~T~~la~~i~~~l~~~---g~~v~~~~l~~~ 43 (199)
T 2zki_A 1 MSCKP-NILVLFYGYGSIVELAKEIGKGAEEA---GAEVKIRRVRET 43 (199)
T ss_dssp --CCC-EEEEEECCSSHHHHHHHHHHHHHHHH---SCEEEEEECCCC
T ss_pred CCCCc-EEEEEEeCccHHHHHHHHHHHHHHhC---CCEEEEEehhHh
Confidence 44444 66666544555777888888877766 778888887654
No 241
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=51.48 E-value=63 Score=23.04 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+.+.+.+.+.+.|..+......+++.. ..++.....++|-||+....... ......+...++||+++-.
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-------DEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-------HHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-------HHHHHHHHcCCCCEEEEcC
Confidence 34556666777778877655444444433 35566667799999986432211 1234566777899988854
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 152 ~ 152 (338)
T 3dbi_A 152 R 152 (338)
T ss_dssp C
T ss_pred C
Confidence 3
No 242
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=51.42 E-value=56 Score=22.39 Aligned_cols=71 Identities=7% Similarity=0.004 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
...+.+.+.+.+.+.|..+......++. ...+++.....++|-||+... . ....+..+...++||+++-
T Consensus 23 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 23 FTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----N----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----G----HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----C----hHHHHHHHHcCCCCEEEEe
Confidence 3445666667777788877665444444 345666677789999999651 1 1112204556689999885
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 44
No 243
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=51.17 E-value=58 Score=22.48 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecChHhHHHHH---HHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDAKEKVCEL---VEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.+.+.+.+.+++...+..+..+...+.+... ....++|.|| . .|+++..+-++.+.||+-++-.
T Consensus 24 L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVII-S-----------RGgta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 24 LFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAII-A-----------AGSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEE-E-----------EHHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEE-e-----------CChHHHHHHhhCCCCEEEecCC
Confidence 33444555555565566666667655444432 2223477544 2 2567777777788999988754
No 244
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=51.00 E-value=60 Score=22.62 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
...+++.+.+.+.+.|..+......+ .....+++.....++|-||+....... ..-..+...++||+++-.
T Consensus 25 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 25 FLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECC
Confidence 34456666677777887766554432 345667788888899999987553321 112345667899998865
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 97 ~ 97 (294)
T 3qk7_A 97 S 97 (294)
T ss_dssp C
T ss_pred C
Confidence 3
No 245
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=50.95 E-value=22 Score=24.24 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=26.7
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEE
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLH 43 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~ 43 (167)
.-++|++++.++-.+..+++..-.|.+.. +.+++++-
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~~~---g~~V~vv~ 54 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLDIP---GLEVAVVT 54 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC------CEEEEEEE
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 44799999999998888887777765435 56776664
No 246
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=50.78 E-value=67 Score=23.12 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=39.7
Q ss_pred CcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 100 VNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 100 ~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+++-.-+-..+..+.| .+.+++.++|-+.+...-.....+--+-..-+.|...++.||++..-.
T Consensus 74 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 139 (300)
T 3eb2_A 74 VPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNP 139 (300)
T ss_dssp SCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECT
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECc
Confidence 4544433333444444 367888899999998765433322112234467888899999998643
No 247
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=50.71 E-value=43 Score=21.64 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=23.2
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHH----hCCCEEEEe
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEK----LHADLLVMG 130 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 130 (167)
+.+.+++.|..+.....-+|-.+.|.+..++ .++|+||..
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 4456677787776654444444444443332 269988774
No 248
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=50.70 E-value=59 Score=22.45 Aligned_cols=72 Identities=7% Similarity=-0.001 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
...+.+.+.+.+.+.|..+......++. ...+++.....++|-||+-..... ...-..+...++||+++-
T Consensus 28 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 28 FPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEEC
Confidence 3445666667777778766543222222 345666777789999988543211 112234566789999885
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 100 ~~ 101 (292)
T 3k4h_A 100 KP 101 (292)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 249
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=50.58 E-value=56 Score=22.21 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
...+.+.+.+.+.+.|..+......+++. ..+++.....++|-||+....... . ... ..+...++||+++-
T Consensus 17 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~-----~~~-~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 17 YARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE-D-----DSY-RELQDKGLPVIAID 89 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-C-----CHH-HHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc-H-----HHH-HHHHHcCCCEEEEc
Confidence 34455666677777888776654444443 345566667799999987543211 1 122 34556789999886
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 90 ~~ 91 (272)
T 3o74_A 90 RR 91 (272)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 250
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=50.20 E-value=44 Score=23.05 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhcCCcEEEEEE--ecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVV--IGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~--~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.|..+..... .+++. ...++.....++|-||+.......+.. ..+ .+...++||+++-
T Consensus 24 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~-----~~~-~~~~~~iPvV~~~ 97 (289)
T 3brs_A 24 VLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYD-----AAK-EIKDAGIKLIVID 97 (289)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHH-----HHT-TTGGGTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHH-----HHH-HHHHCCCcEEEEC
Confidence 3455555666666766544333 23433 345555556789999887543222111 111 2345679998885
Q ss_pred C
Q 040308 162 G 162 (167)
Q Consensus 162 ~ 162 (167)
.
T Consensus 98 ~ 98 (289)
T 3brs_A 98 S 98 (289)
T ss_dssp S
T ss_pred C
Confidence 4
No 251
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=50.12 E-value=76 Score=23.60 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 14 GGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 14 ~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
....+++.+++|+++|++.+ ..+|+++|=-+
T Consensus 155 T~~~~eRiar~AF~~A~~r~--rkkVt~v~KaN 185 (349)
T 3blx_A 155 TRPKTERIARFAFDFAKKYN--RKSVTAVHKAN 185 (349)
T ss_dssp EHHHHHHHHHHHHHHHHHTT--CCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHhcC--CCcEEEEeCCc
Confidence 34678999999999999872 34688887444
No 252
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=50.09 E-value=48 Score=21.28 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=34.4
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+...|..+ ....+ ..+.++.+++..+|+|++...-.+ ..++ ...+.+-.. ..+||+++-..
T Consensus 25 ~~L~~~g~~v---~~~~~-~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 25 RGLERRGYAV---RQAHN-KDEALKLAGAEKFEFITVXLHLGN-DSGL---SLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHTTCEE---EEECS-HHHHHHHHTTSCCSEEEECSEETT-EESH---HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHCCCEE---EEeCC-HHHHHHHHhhCCCCEEEEeccCCC-ccHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 3344456543 22233 344556667788999999865322 1111 233444433 35899888654
No 253
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=50.01 E-value=62 Score=22.51 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=25.1
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
.+|+|++.+..+|...+..+..+. .++.++|+-.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~-------~~v~vv~idt 79 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR-------PDIPVILTDT 79 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS-------TTCEEEECCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC-------CCCeEEEecC
Confidence 489999999999988887776653 2456676644
No 254
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=49.99 E-value=36 Score=24.05 Aligned_cols=110 Identities=12% Similarity=-0.034 Sum_probs=67.8
Q ss_pred CCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 040308 3 GNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGR 82 (167)
Q Consensus 3 ~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (167)
+.+...=|+..+........+..+.+|+.. + --+.-|.-.+....+.-.. ...++ ++...
T Consensus 32 ~~VtSANIACGfHAGDp~~M~~Tv~lA~~~---g-V~IGAHPgypDl~GFGRR~---------m~~s~-------~el~~ 91 (252)
T 2x5e_A 32 PLVDQANLACGFHAGDPLTMRRAVELAVRH---G-VSIGAHPAYPDLSGFGRRS---------LACSA-------EEVHA 91 (252)
T ss_dssp GGCSEEEEECSSSSCCHHHHHHHHHHHHHT---T-CEEEEECCCSCTTTTTCSC---------CCCCH-------HHHHH
T ss_pred HhhhhhhhhccccCCCHHHHHHHHHHHHHc---C-CeeecCCCCCcccCCCCCC---------CCCCH-------HHHHH
Confidence 344555567777777888899999999988 3 3455666554433221110 00111 22223
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEe----------cChHhHHHHHHHHhCCCEEEEeec
Q 040308 83 ITQAIIDHALKICSEKNVNVKSEVVI----------GDAKEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~----------g~~~~~I~~~a~~~~~dliV~g~~ 132 (167)
.....+-.+...++..|.++..+--. ...++.|++.+...+.+|+++|..
T Consensus 92 ~v~YQiGAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~ 151 (252)
T 2x5e_A 92 MVLYQIGALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA 151 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 33333455667777788776655322 246889999999999999999955
No 255
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=49.73 E-value=59 Score=22.74 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
...+++.+.+.+.+.|..+......++. ...+++.....++|-||+-...... ..-..+...++||+++-
T Consensus 42 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--------~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 42 NSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD--------PIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp HHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC--------HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc--------HHHHHHHHcCCCEEEEC
Confidence 4455666667777778766543333332 3456677777899998886432211 11234556789999886
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 114 ~~ 115 (305)
T 3huu_A 114 KS 115 (305)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 256
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=49.70 E-value=67 Score=23.43 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCcEEEEEEecC-hHhHHHHHHHHhCCCEEEEeecC
Q 040308 90 HALKICSEKNVNVKSEVVIGD-AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.+.+.++|+++-. ..+ ...++++..++.++|++|+-..+
T Consensus 54 ~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 54 PVKTLALEHNVPVYQ---PENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHHTTCCEEC---CSCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHHcCCCEEc---cCcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 345666778888632 122 13578888999999999997654
No 257
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=49.46 E-value=22 Score=25.98 Aligned_cols=52 Identities=8% Similarity=-0.005 Sum_probs=35.7
Q ss_pred cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 109 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
-...++|++.|++.+..+|+-.+.+...+....+......+.++.++||.+-
T Consensus 37 ~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 37 LEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLH 88 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 3789999999999999999877654222211122234556678889999764
No 258
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=49.44 E-value=27 Score=25.18 Aligned_cols=54 Identities=6% Similarity=0.073 Sum_probs=39.8
Q ss_pred EecChHhHHHHHHHHhCCCEEEEeecCCCccce-ecccchhHHHHhcCCCCEEEE
Q 040308 107 VIGDAKEKVCELVEKLHADLLVMGSHTFGPIKR-MFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 107 ~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~i~~~~~~pVliv 160 (167)
..-...+++++.|++.+..+|+-.+.+.-.+.+ ..+......+..+.++||.+-
T Consensus 26 ~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValH 80 (286)
T 1gvf_A 26 HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_dssp CSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 334789999999999999999988775322222 234567778888899998875
No 259
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=49.42 E-value=63 Score=22.39 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEec--ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIG--DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g--~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..++++.+.+.+.+.|..+......+ +....+.+.....++|-||+...... . .. -..+...++||+++-
T Consensus 25 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~-~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 25 TSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN--D-----PR-VRFMTERNMPFVTHG 96 (288)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT--C-----HH-HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC--c-----HH-HHHHhhCCCCEEEEC
Confidence 34556666777777887765543333 23456677777789999988643211 1 12 234556789999886
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 97 ~~ 98 (288)
T 3gv0_A 97 RS 98 (288)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 260
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=49.31 E-value=61 Score=22.23 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040308 18 SMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSE 97 (167)
Q Consensus 18 s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (167)
+...++.++++|+.. +++.+.+|.-.... ... .+...+...+.++.+.+.+++
T Consensus 82 ~~~~~~~~i~~a~~l---G~~~v~~~~g~~~~-------------------~~~-----~~~~~~~~~~~l~~l~~~a~~ 134 (278)
T 1i60_A 82 IITEFKGMMETCKTL---GVKYVVAVPLVTEQ-------------------KIV-----KEEIKKSSVDVLTELSDIAEP 134 (278)
T ss_dssp HHHHHHHHHHHHHHH---TCCEEEEECCBCSS-------------------CCC-----HHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHc---CCCEEEEecCCCCC-------------------CCC-----HHHHHHHHHHHHHHHHHHHHh
Confidence 356688889999999 78877775322110 000 122234455566777777788
Q ss_pred cCCcEEEEEEecC-----hHhHHHHHHHHhCC
Q 040308 98 KNVNVKSEVVIGD-----AKEKVCELVEKLHA 124 (167)
Q Consensus 98 ~~~~~~~~v~~g~-----~~~~I~~~a~~~~~ 124 (167)
+|+.+-.+-..+. ..+++.+++++.+.
T Consensus 135 ~gv~l~lEn~~~~~~~~~~~~~~~~l~~~~~~ 166 (278)
T 1i60_A 135 YGVKIALEFVGHPQCTVNTFEQAYEIVNTVNR 166 (278)
T ss_dssp GTCEEEEECCCCTTBSSCSHHHHHHHHHHHCC
T ss_pred cCCEEEEEecCCccchhcCHHHHHHHHHHhCC
Confidence 8887766544332 45667777776554
No 261
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=49.06 E-value=45 Score=20.64 Aligned_cols=65 Identities=9% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHh--CCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKL--HADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~--~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
...+.+.|..+. ....+ .++.++.+.+. .+|+|++...-.+ ..++ ...+.+-... .+||+++-..
T Consensus 53 ~~~L~~~g~~v~--~~~~~-~~~al~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 53 TQIFTSEGFNII--DTAAD-GEEAVIKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHTTCEEE--EEESS-HHHHHHHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhCCCeEE--EEECC-HHHHHHHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEecc
Confidence 344445565442 12333 44455555666 8999999976433 2221 2344444433 4888888654
No 262
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=48.79 E-value=51 Score=24.47 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHHhhhcCCcEEEEE-EecCh----HhHHHHHHHHhCCCEEE-Eee
Q 040308 88 IDHALKICSEKNVNVKSEV-VIGDA----KEKVCELVEKLHADLLV-MGS 131 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v-~~g~~----~~~I~~~a~~~~~dliV-~g~ 131 (167)
.+++.+.+.+.|+.+...- .++++ .+.+.+.+++.++|+|| +|.
T Consensus 58 ~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 58 LDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3444445555676553321 22332 45566667778899888 554
No 263
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=48.71 E-value=38 Score=19.74 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=28.3
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+.+....+..+|++++...-.+ ..+. ...+.+-.. ..+|++++-..
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 36 GLQALDIVTKERPDLVLLDMKIPG-MDGI---EILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTT-CCHH---HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCCEEEEEcc
Confidence 445556666778999999876432 2211 233444332 35899888543
No 264
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=48.67 E-value=62 Score=22.15 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......++... ..++.....++|-||+......... ... ..+....+||+++-.
T Consensus 18 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~~iPvV~i~~ 90 (271)
T 2dri_A 18 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG-----NAV-KMANQANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH-----HHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHH-HHHHHCCCcEEEecC
Confidence 3455555666667766544333344433 3345555678999888543221111 112 234556899998854
No 265
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=48.52 E-value=61 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=27.7
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
+++++|.+.+-.+|..++..+.+. +.+++.+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~-------~~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD-------YDDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-------CSEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc-------CCCEEEEEEECC
Confidence 478999999999998877776553 347888887653
No 266
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=48.34 E-value=20 Score=25.40 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhcCCcEEEE--EEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSE--VVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
++++..++..+...++....- +..| .+++...++...+.|+|+... -++.+- -...-.+.+..++|..+|+.
T Consensus 105 ~rL~~~a~~ka~gk~~~~krp~~lk~G--vneVTklVE~kKAqLVVIA~D-VdPiEl---V~fLPaLC~k~gVPY~iVk~ 178 (258)
T 3iz5_H 105 ERLLKRAQAEAEGKTVEAKKPIVVKYG--LNHVTYLIEQSKAQLVVIAHD-VDPIEL---VVWLPALCRKMEVPYCIVKG 178 (258)
T ss_dssp HHHHHHHHTTCCCCSSSSCCCCCEEES--HHHHHHHHHTTCEEEEEEESC-CSSTHH---HHHHHHHHTTTTCCEEEESC
T ss_pred HHHHHHHHHHhcCCCCCCCCCceeecc--cHHHHHHHHcCcceEEEEeCC-CChHHH---HhHHHHHHHhcCCCeEEECC
Confidence 344454554444433332221 2333 678889999999999999865 454542 23456788888999999986
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
+
T Consensus 179 K 179 (258)
T 3iz5_H 179 K 179 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 267
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=48.32 E-value=39 Score=19.65 Aligned_cols=48 Identities=10% Similarity=0.287 Sum_probs=29.1
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
..+.++...+..+|++++...-.+ ..+. ...+.+-...++|++++-..
T Consensus 36 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 36 GAEMHQILSEYDINLVIMDINLPG-KNGL---LLARELREQANVALMFLTGR 83 (123)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCcEEEEECC
Confidence 445556667778999999876432 2211 23444444456888887543
No 268
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=48.31 E-value=27 Score=20.99 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCc-cceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGP-IKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
+...+...|..+. ...+ .++.++.+++..+|+|++...-.+. ..++ ...+.+-... .+||+++-..
T Consensus 22 l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 22 LSKLLSPLDVTIQ---CFAS-AESFMRQQISDDAIGMIIEAHLEDKKDSGI---ELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp HHHHHTTSSSEEE---EESS-HHHHTTSCCCTTEEEEEEETTGGGBTTHHH---HHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHCCcEEE---EeCC-HHHHHHHHhccCCCEEEEeCcCCCCCccHH---HHHHHHHhCCCCCCEEEEEcC
Confidence 3444555565433 2233 3445555666789999998653221 1111 2334444433 4899888654
No 269
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=48.22 E-value=5.2 Score=23.66 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+.+.+...++++++ ....+.|+.+..=... .-++|++|......+... +......+-...++||=++..
T Consensus 12 l~~~i~~l~~~~~v--~~v~LFGS~arG~~~~--~SDiDl~V~~~~~~~~~~---~~~l~~~l~~~l~~~vDlv~~ 80 (98)
T 1wot_A 12 RREAVLSLCARHGA--VRVRVFGSVARGEARE--DSDLDLLVAFEEGRTLLD---HARLKLALEGLLGVRVDIVSE 80 (98)
T ss_dssp HHHHHHHHHHHHTC--SSCEECSHHHHTCCCT--TCCCEEEECCCSSCCHHH---HHHHHHHHHHHSCSCCEEEET
T ss_pred HHHHHHHHHHHcCC--cEEEEEccccCCCCCC--CCCEEEEEEeCCCCCHHH---HHHHHHHHHHHcCCCEEEEEh
Confidence 33334444455553 4457888877763322 359999997755333221 223344444444566655543
No 270
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=48.17 E-value=21 Score=25.94 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=7.9
Q ss_pred CeEEEEEEeCCC
Q 040308 37 GSFIVLHVQPPP 48 (167)
Q Consensus 37 ~~l~~l~v~~~~ 48 (167)
..+.++|+-+-.
T Consensus 17 ~~mrilh~SD~H 28 (336)
T 2q8u_A 17 KELKILHTSDWH 28 (336)
T ss_dssp CEEEEEEEECCC
T ss_pred CceEEEEECccc
Confidence 467777777654
No 271
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=47.90 E-value=34 Score=22.44 Aligned_cols=12 Identities=33% Similarity=0.304 Sum_probs=10.2
Q ss_pred CCCEEEEeecCC
Q 040308 123 HADLLVMGSHTF 134 (167)
Q Consensus 123 ~~dliV~g~~~~ 134 (167)
++|.||+|++-.
T Consensus 71 ~aD~ii~gsP~y 82 (200)
T 2a5l_A 71 NCAGLALGSPTR 82 (200)
T ss_dssp TCSEEEEEEECB
T ss_pred HCCEEEEEcChh
Confidence 899999998753
No 272
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=47.89 E-value=66 Score=22.20 Aligned_cols=80 Identities=10% Similarity=-0.037 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040308 18 SMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSE 97 (167)
Q Consensus 18 s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (167)
....++.++++|+.. +++...++.- .+. . .. .++..+...+.++++.+.+.+
T Consensus 91 ~~~~~~~~i~~A~~l---Ga~~v~~~~g-~~~-~------------------~~-----~~~~~~~~~~~l~~l~~~a~~ 142 (269)
T 3ngf_A 91 FRDNVDIALHYALAL---DCRTLHAMSG-ITE-G------------------LD-----RKACEETFIENFRYAADKLAP 142 (269)
T ss_dssp HHHHHHHHHHHHHHT---TCCEEECCBC-BCT-T------------------SC-----HHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHc---CCCEEEEccC-CCC-C------------------CC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 456688899999999 8887766532 100 0 00 122334455667777788888
Q ss_pred cCCcEEEEEEe-----c---ChHhHHHHHHHHhCCC
Q 040308 98 KNVNVKSEVVI-----G---DAKEKVCELVEKLHAD 125 (167)
Q Consensus 98 ~~~~~~~~v~~-----g---~~~~~I~~~a~~~~~d 125 (167)
.|+.+-.+... + ...+.+.+++++.+.+
T Consensus 143 ~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l~~~v~~~ 178 (269)
T 3ngf_A 143 HGITVLVEPLNTRNMPGYFIVHQLEAVGLVKRVNRP 178 (269)
T ss_dssp GTCEEEECCCCTTTSTTBSCCCHHHHHHHHHHHCCT
T ss_pred cCCEEEEeeCCcccCccchhcCHHHHHHHHHHhCCC
Confidence 89876655321 1 2356667777766544
No 273
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=47.59 E-value=39 Score=19.45 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=28.7
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
..+.++...+..+|++++...-.+ ..+. ...+.+-...++|++++-..
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 34 GREALEQFEAEQPDIIILDLMLPE-IDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHHhCCCCEEEEeccCCC-CCHH---HHHHHHHhCCCCCEEEEecC
Confidence 344455566678999999865432 2221 23444444456899888543
No 274
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=47.33 E-value=43 Score=19.94 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=28.8
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
.++.++..++..+|+|++...-.. ..+. ...+.+-... .+|++++-..
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 40 GEEGERLFGLHAPDVIITDIRMPK-LGGL---EMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCcEEEEecC
Confidence 445566667779999999976432 2211 2344444443 4888887544
No 275
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=47.23 E-value=60 Score=21.56 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhh--hcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE
Q 040308 84 TQAIIDHALKICS--EKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159 (167)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli 159 (167)
.+.+.+.+.+.+. +.|+.+++.... |...+.|-+. ...++|-||+.....+..+- -....+....+|++=
T Consensus 36 l~di~~~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a-~~~~~dgIIINpgAyTHtSv-----AlrDAl~~v~~P~VE 109 (176)
T 2c4w_A 36 LDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQES-VGSEYEGIIINPGAFSHTSI-----AIADAIMLAGKPVIE 109 (176)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHH-HSSSCCEEEEECGGGGGTCH-----HHHHHHHTSSSCEEE
T ss_pred HHHHHHHHHHHhccccCCCEEEEEeeCcHHHHHHHHHHh-ccCCeeEEEECcchhccchH-----HHHHHHHhCCCCEEE
Confidence 4445566667777 677776665322 3444444433 22239999998655433221 235677778899987
Q ss_pred EcC
Q 040308 160 VKG 162 (167)
Q Consensus 160 v~~ 162 (167)
|+-
T Consensus 110 VHi 112 (176)
T 2c4w_A 110 VHL 112 (176)
T ss_dssp EES
T ss_pred EEe
Confidence 763
No 276
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=47.11 E-value=81 Score=23.05 Aligned_cols=61 Identities=28% Similarity=0.359 Sum_probs=36.6
Q ss_pred HhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC---CCccceecccchhHH-HHhcCCCCEEEEcC
Q 040308 94 ICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT---FGPIKRMFLGSVSNY-CANHAQCPVVVVKG 162 (167)
Q Consensus 94 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~---~~~~~~~~~gs~~~~-i~~~~~~pVliv~~ 162 (167)
.+.+.|+++... .++..-.+. + .+|.+++|+.+ .+.+-.. .|+..-. +.++.++|++++-+
T Consensus 167 ~L~~~gI~vtli--~Dsa~~~~m---~--~vd~VivGAd~i~~nG~v~nk-iGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 167 ALCHLNVPVTVV--LDAAVGYIM---E--KADLVIVGAEGVVENGGIINK-IGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp HHHTTTCCEEEE--CGGGHHHHG---G--GCSEEEEECSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHcCCCEEEE--ehhHHHHHH---H--hCCEEEECceEEecCCCeeeh-hhhHHHHHHHHHhCCCEEEEec
Confidence 334678887553 223222333 3 79999999985 2333333 4654433 45777899999843
No 277
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=47.02 E-value=86 Score=23.30 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=38.1
Q ss_pred hhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 95 CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 95 ~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
..+.|+++-+++..-...+-+.+ -+|.+-+|++..... ....++...++||++=.+.
T Consensus 130 ~~e~GLpiatE~ld~~~~qyv~d-----lvs~~aIGARt~enq-------~hre~asg~s~PVg~Kngt 186 (346)
T 3tqk_A 130 LTNMGLPCATEFLDVITPQYFAE-----LITWGAIGARTVESQ-------VHRELASGLSASIGFKNAT 186 (346)
T ss_dssp HHHTTCCEEEECCSSSGGGGTGG-----GCSEEEECGGGTTCH-------HHHHHHTTCSSEEEEECCT
T ss_pred HHhcCCCEEEEecCcCCHHHHHH-----HhheeeeCcccccCH-------HHHHHhcCCCCceEEeCCC
Confidence 46789998888877654443332 467889998754321 2356777889999875543
No 278
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=47.01 E-value=44 Score=19.95 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=29.4
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~~ 163 (167)
.++.++.+++..+|+|++...-.+ ..+. ...+.+-. ...+||+++-..
T Consensus 43 ~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDLMMVG-MDGF---SICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEETTCTT-SCHH---HHHHHHHTSTTTTTSEEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEecccCC-CcHH---HHHHHHHhCccccCCcEEEEeCC
Confidence 455566667778999999976432 2211 24455544 245899888544
No 279
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=46.88 E-value=35 Score=23.73 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 114 KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 114 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.++.+.+.+.|.|.+|-...-..... -.+...+-+ .+.|+++.|..
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~~--~~~v~~ik~-~~~Pvvlfp~~ 68 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSKVRR-FLVPCVLEVSA 68 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHHH--HHHHHHHTT-SSSCEEEECSC
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHHH--HHHHHHhhc-cCCCEEEeCCC
Confidence 345555677899999997542222222 234444444 88999999875
No 280
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=46.81 E-value=45 Score=23.63 Aligned_cols=73 Identities=25% Similarity=0.359 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhcCCcEEEE--EEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSE--VVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
++++..++..+...+.....- +..| .+++...++...+-|+|+...- ++..-. .....+.+..++|..+|+.
T Consensus 102 ~rl~~~a~~ka~gk~~~~k~p~~lk~G--vneVtKaIekgKAqLVVIA~Dv-dPielv---~~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 102 QRLVAQAEAKKDGKQVETKKPIVLKYG--LNHITTLIENKQAKLVVIAHDV-DPIELV---IFLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCCCEEEC--HHHHHHHHHTSCCSEEEEESCC-SSTHHH---HHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHhcCCCCCCCCCceeecc--hHHHHHHHHcCCceEEEEeCCC-ChHHHH---HHHHHHHHHcCCCEEEECC
Confidence 344455555544444332221 2333 6788888999999999999663 333321 2335677788889888875
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
+
T Consensus 176 K 176 (255)
T 4a17_F 176 K 176 (255)
T ss_dssp H
T ss_pred H
Confidence 3
No 281
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=46.79 E-value=70 Score=22.17 Aligned_cols=70 Identities=7% Similarity=0.066 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++. ..+++.....++|-||+....... . ... ..+...++||+++-.
T Consensus 37 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~-----~~~-~~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 37 RIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-H-----PFY-QRWANDPFPIVALDR 108 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTT-C-----HHH-HTTTTSSSCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc-H-----HHH-HHHHhCCCCEEEECC
Confidence 455566666677787765443333443 335555666789999886443211 1 011 234456799988854
No 282
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=46.75 E-value=41 Score=19.52 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=27.7
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
..+.+...++..+|++++...-.+ ..+. ...+.+-.. ..+|++++-..
T Consensus 34 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 34 GLSALSIARENKPDLILMDIQLPE-ISGL---EVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCSS-SBHH---HHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHcCccccCCcEEEEECC
Confidence 344556667778999999976432 2211 234444432 35899988543
No 283
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=46.66 E-value=19 Score=23.75 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=13.3
Q ss_pred hHHHHHHHHhCCCEEEEeecC
Q 040308 113 EKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 113 ~~I~~~a~~~~~dliV~g~~~ 133 (167)
+.+.+... .+|.||+|++-
T Consensus 64 ~~~~~~l~--~aD~ii~~sP~ 82 (193)
T 1rtt_A 64 ERFREQIR--AADALLFATPE 82 (193)
T ss_dssp HHHHHHHH--HCSEEEEECCE
T ss_pred HHHHHHHH--hCCEEEEEccc
Confidence 34444455 89999999864
No 284
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=46.59 E-value=41 Score=19.49 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=29.4
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
..+..+...+..+|++++...-.+ ..+. ...+.+-...++|++++-..
T Consensus 35 ~~~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILLDINLPD-ENGL---MLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEECC
Confidence 455666777778999999876432 2221 23444444445888887543
No 285
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=46.58 E-value=70 Score=22.15 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecCh--HhH---HHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDA--KEK---VCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~---I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
.+.+.+.+.+.+.|..+......+++ ... .++.....++|-||+...... . ...+ .+...++||+++
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~-~l~~~~iPvV~~ 96 (290)
T 2rgy_A 25 TILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--D-----EDLD-ELHRMHPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--H-----HHHH-HHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--H-----HHHH-HHhhcCCCEEEE
Confidence 44555566666778766543333333 233 566666678999988644322 1 1223 334568999888
Q ss_pred cC
Q 040308 161 KG 162 (167)
Q Consensus 161 ~~ 162 (167)
-.
T Consensus 97 ~~ 98 (290)
T 2rgy_A 97 NR 98 (290)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 286
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=46.52 E-value=42 Score=23.39 Aligned_cols=51 Identities=10% Similarity=0.112 Sum_probs=28.9
Q ss_pred HhHHHHHHH--HhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 112 KEKVCELVE--KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~--~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+.|.+..+ ...+|++|+-..+ +.......+.....+++...+||++|=+.
T Consensus 118 ~~~I~~~~~~l~~~~D~vlIEGag-Gl~~pl~~~~~~adlA~~l~~pVILV~~~ 170 (242)
T 3qxc_A 118 TDNLTQRLHNFTKTYDLVIVEGAG-GLCVPITLEENMLDFALKLKAKMLLISHD 170 (242)
T ss_dssp HHHHHHHHHHGGGTCSEEEEECCS-CTTCBSSSSCBHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCEEEEECCC-CccccccccchHHHHHHHcCCCEEEEEcC
Confidence 344554433 2478998886543 11211112234456888889998888543
No 287
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=46.41 E-value=72 Score=22.20 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040308 17 ESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICS 96 (167)
Q Consensus 17 ~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (167)
.+...++.++++|+.. +++.+++|.-..+ .. .+...+...+.++.+.+.+.
T Consensus 99 ~~~~~~~~~i~~a~~l---G~~~v~~~~G~~~---------------------~~-----~~~~~~~~~~~l~~l~~~a~ 149 (290)
T 3tva_A 99 SRVAEMKEISDFASWV---GCPAIGLHIGFVP---------------------ES-----SSPDYSELVRVTQDLLTHAA 149 (290)
T ss_dssp HHHHHHHHHHHHHHHH---TCSEEEECCCCCC---------------------CT-----TSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCCEEEEcCCCCc---------------------cc-----chHHHHHHHHHHHHHHHHHH
Confidence 3556788899999999 8888887742111 00 01122344555677777888
Q ss_pred hcCCcEEEEEEecChHhHHHHHHHHhCCC
Q 040308 97 EKNVNVKSEVVIGDAKEKVCELVEKLHAD 125 (167)
Q Consensus 97 ~~~~~~~~~v~~g~~~~~I~~~a~~~~~d 125 (167)
++|+.+-.+-.. ...+.+.+++++.+.+
T Consensus 150 ~~Gv~l~lE~~~-~~~~~~~~l~~~~~~~ 177 (290)
T 3tva_A 150 NHGQAVHLETGQ-ESADHLLEFIEDVNRP 177 (290)
T ss_dssp TTTCEEEEECCS-SCHHHHHHHHHHHCCT
T ss_pred HcCCEEEEecCC-CCHHHHHHHHHhcCCC
Confidence 888876555333 3456667777765433
No 288
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=46.39 E-value=78 Score=22.65 Aligned_cols=62 Identities=6% Similarity=0.025 Sum_probs=36.9
Q ss_pred CcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCc-cceecccchhHHHHhcC---CCCEEEEc
Q 040308 100 VNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGP-IKRMFLGSVSNYCANHA---QCPVVVVK 161 (167)
Q Consensus 100 ~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~i~~~~---~~pVliv~ 161 (167)
+++-.-+-..+..+.| .+.+++.++|-+.+-...... ..+--+-..-..|...+ +.||++..
T Consensus 73 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn 140 (294)
T 3b4u_A 73 SRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYN 140 (294)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred CcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 4443333333444444 466788899999888765433 22211122335678888 89999975
No 289
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=46.34 E-value=46 Score=19.97 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=34.8
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
..+...|..+. ...+ .++.++.+.+..+|+|++...-.+ ..++ .+.+.+-.+ ..+|++++-..
T Consensus 22 ~~L~~~g~~v~---~~~~-~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 22 LVLRGAGYEVR---RAAS-GEEALQQIYKNLPDALICDVLLPG-IDGY---TLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp HHHHHTTCEEE---EESS-HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHSGGGTTCCEEEEECT
T ss_pred HHHHHCCCEEE---EeCC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHcCCCcCCccEEEEecC
Confidence 34444565432 2233 445556667789999999876432 2221 233444332 35889888654
No 290
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=46.09 E-value=47 Score=21.06 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=28.9
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..++..+..++-+.+.-++|+...++.-...--.+-+...+.++.||+++=
T Consensus 70 ~y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~ 121 (141)
T 4e0q_A 70 DYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQL 121 (141)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEE
Confidence 3456666667777788888887654332111111233455566677887773
No 291
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=45.91 E-value=47 Score=23.65 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhC--CCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLH--ADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~--~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.|+.+......+++.. ..++.....+ +|-||+......... ...+ .+....+||+++-
T Consensus 22 ~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~ 95 (332)
T 2rjo_A 22 AFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADAR-----VIVE-ACSKAGAYVTTIW 95 (332)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHH-----HHHH-HHHHHTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHH-----HHHH-HHHHCCCeEEEEC
Confidence 4455555666667877655433344433 3445555567 999988643211110 1122 3445689998885
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 96 ~~ 97 (332)
T 2rjo_A 96 NK 97 (332)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 292
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=45.85 E-value=43 Score=19.52 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=27.0
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKG 162 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~ 162 (167)
.++.++..++..+|++++...-.+ ..+. ...+.+-.. ..+|++++-.
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 35 YDSAVNQLNEPWPDLILLAWMLPG-GSGI---QFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp HHHHHTTCSSSCCSEEEEESEETT-EEHH---HHHHHHHTSTTTTTSCEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHhCcccCCCCEEEEeC
Confidence 344445556678999999865332 1111 234444433 3589888753
No 293
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=45.74 E-value=87 Score=23.00 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
.+++.+.+.+.+...|+.++..-........+..... ++|.||+|+...
T Consensus 265 T~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~g~p~y 313 (398)
T 1ycg_A 265 TEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEIL--DARAVLVGSPTI 313 (398)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHH--HCSEEEEECCCB
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECCcc
Confidence 3445555555555567666554333334555555555 799999998643
No 294
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=45.48 E-value=55 Score=21.58 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=24.8
Q ss_pred HHHHHHhhhcCCcEEEEEEecChHhHHHHHHHH--hCCCEEEEe
Q 040308 89 DHALKICSEKNVNVKSEVVIGDAKEKVCELVEK--LHADLLVMG 130 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliV~g 130 (167)
..+.+.+.+.|+.+.....-+|-.+.|.+..++ ..+|+||..
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 344566677888877665555444444443322 158988874
No 295
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=45.24 E-value=29 Score=24.38 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=35.8
Q ss_pred HHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHH
Q 040308 89 DHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYC 149 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i 149 (167)
.+..+.+++.|..+-..+.-+.+.+.+..+.. ..|+|.+.+-.+++-.+.|..+..++|
T Consensus 124 ~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~--~vD~VlvMsV~PGfgGQ~fi~~~l~KI 182 (246)
T 3inp_A 124 DRSLQLIKSFGIQAGLALNPATGIDCLKYVES--NIDRVLIMSVNPGFGGQKFIPAMLDKA 182 (246)
T ss_dssp HHHHHHHHTTTSEEEEEECTTCCSGGGTTTGG--GCSEEEEECSCTTC--CCCCTTHHHHH
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHh--cCCEEEEeeecCCCCCcccchHHHHHH
Confidence 44445556778776665555677777777777 688887766555544444555554443
No 296
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=45.21 E-value=47 Score=19.74 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=33.8
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc--CCCCEEEEcCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH--AQCPVVVVKGK 163 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~--~~~pVliv~~~ 163 (167)
...+.+.|..+.. ..+..+.+....+...+|+|++...-.+ ..+. ...+.+-.. ..+||+++-..
T Consensus 24 ~~~L~~~g~~v~~---~~~~~~a~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 24 ILYLKSRGIDAVG---ADGAEEARLYLHYQKRIGLMITDLRMQP-ESGL---DLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp HHHHHHTTCCEEE---ESSHHHHHHHHHHCTTEEEEEECSCCSS-SCHH---HHHHHHHTSTTTTCEEEEEESS
T ss_pred HHHHHHcCceEEE---eCCHHHHHHHHHhCCCCcEEEEeccCCC-CCHH---HHHHHHHhcCCCCCCEEEEeCC
Confidence 3444445655432 3344444444444334999999876432 1211 244445443 34888887654
No 297
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=45.11 E-value=36 Score=24.41 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecCh------------HhHHHHHHHHhCCCEEEEeecC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDA------------KEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~------------~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.+.+.+.+.+.|++++..-..+-+ ...+.+... .+|.||+++.-
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~--~ADgiV~aSP~ 133 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSE--WSEGQVWCSPE 133 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHH--HCSEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHH--HCCeEEEEcCc
Confidence 33444444444556666554332222 455666666 89999999875
No 298
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=44.96 E-value=16 Score=28.03 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=25.0
Q ss_pred cChHhHHHHHHH-HhCCCEEEEeecCCCccceecccchhHHHHhcC
Q 040308 109 GDAKEKVCELVE-KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA 153 (167)
Q Consensus 109 g~~~~~I~~~a~-~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~ 153 (167)
|+-.+.+.+.++ +.++.+|.+-..+...-...-.......++++.
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~ 158 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAARC 158 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTTTCCTTHHHHHHHHHHHTTC
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCccccHHHHHHHHHHHHHHHh
Confidence 555666666554 568888888877654211111233445566554
No 299
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=44.84 E-value=47 Score=19.63 Aligned_cols=67 Identities=12% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCCC
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGKG 164 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~~ 164 (167)
+...+.+.|..+ .....+ .++.++.+++..+|+|++...-.+ ..+. ...+.+-... .+|++++-...
T Consensus 17 l~~~L~~~g~~v--~~~~~~-~~~a~~~~~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 17 IRNLLIKNDIEI--LAELTE-GGSAVQRVETLKPDIVIIDVDIPG-VNGI---QVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp HHHHHHHTTEEE--EEEESS-STTHHHHHHHHCCSEEEEETTCSS-SCHH---HHHHHHHHTTCCSEEEEEECC-
T ss_pred HHHHHhhCCcEE--EEEcCC-HHHHHHHHHhcCCCEEEEecCCCC-CChH---HHHHHHHhcCCCCeEEEEeCCC
Confidence 334444556333 212223 334445566679999999976433 2211 2344444444 48888876543
No 300
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=44.63 E-value=81 Score=22.30 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=37.5
Q ss_pred HHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 90 HALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+...+...|..+.. ...+. .+.++.+.+..+|+|++...-+....++ .++..|-....+||+++-..
T Consensus 175 ~l~~~L~~~g~~v~~--~a~~g-~eAl~~~~~~~~dlvl~D~~MPd~mdG~---e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 175 DIEALVRELGHDVTD--IAATR-GEALEAVTRRTPGLVLADIQLADGSSGI---DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHHTTCEEEE--EESSH-HHHHHHHHHCCCSEEEEESCCTTSCCTT---TTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHhhccCceEEE--EeCCH-HHHHHHHHhCCCCEEEEcCCCCCCCCHH---HHHHHHHhcCCCCEEEEeCC
Confidence 334455556765431 22333 3445566677899999987644122221 23344433338999998653
No 301
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=44.57 E-value=25 Score=24.07 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=26.4
Q ss_pred CCCCCcEEEEeecCChhHHH-HHHHHHHhccccCCCCCeEEEEE
Q 040308 1 MSGNLGCVIVAVDGGEESMD-ALRWAIDNLKLRSPAPGSFIVLH 43 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~-al~~a~~la~~~~~~~~~l~~l~ 43 (167)
||..-++|++++.++-.... +++..-.|.+ . +.+++++-
T Consensus 1 m~l~~k~IllgiTGsiaayk~~~~ll~~L~~-~---g~eV~vv~ 40 (207)
T 3mcu_A 1 MSLKGKRIGFGFTGSHCTYEEVMPHLEKLIA-E---GAEVRPVV 40 (207)
T ss_dssp -CCTTCEEEEEECSCGGGGTTSHHHHHHHHH-T---TCEEEEEE
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHHHHHh-C---CCEEEEEE
Confidence 55566899999999976654 6666555443 4 57777664
No 302
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=44.53 E-value=67 Score=21.30 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=28.9
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.++.++.+++..+|+|++...-.+ ..+. ...+.+-....+||+++-.
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l~~-~~g~---~~~~~l~~~~~~~ii~lt~ 83 (230)
T 2oqr_A 37 GPAALAEFDRAGADIVLLDLMLPG-MSGT---DVCKQLRARSSVPVIMVTA 83 (230)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHHCSCSEEEEEC
T ss_pred HHHHHHHHhccCCCEEEEECCCCC-CCHH---HHHHHHHcCCCCCEEEEeC
Confidence 344556666778999999976432 2211 2344454445699998854
No 303
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=44.44 E-value=60 Score=22.51 Aligned_cols=71 Identities=10% Similarity=-0.040 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhcCCcEEEEE--EecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEV--VIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v--~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.+.+.+.|+.+.... ..++... ..++.....++|-||+......... ...+. +....+||+++-
T Consensus 18 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~-----~~~~~-~~~~~iPvV~~~ 91 (288)
T 1gud_A 18 DMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV-----MPVAR-AWKKGIYLVNLD 91 (288)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH-----HHHHH-HHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHHHH-HHHCCCeEEEEC
Confidence 345555666667777665443 2334433 3445555668999988644322111 12232 345679999885
Q ss_pred C
Q 040308 162 G 162 (167)
Q Consensus 162 ~ 162 (167)
.
T Consensus 92 ~ 92 (288)
T 1gud_A 92 E 92 (288)
T ss_dssp S
T ss_pred C
Confidence 4
No 304
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=44.43 E-value=77 Score=22.02 Aligned_cols=84 Identities=8% Similarity=0.063 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040308 18 SMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSE 97 (167)
Q Consensus 18 s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (167)
+...++.++++|+.. +++.+++|.-...... . .+. .+...+...+.++.+.+.+++
T Consensus 102 ~~~~~~~~i~~a~~l---Ga~~v~~~~g~~~~~~-~---------------~p~-----~~~~~~~~~~~l~~l~~~a~~ 157 (287)
T 3kws_A 102 CMDTMKEIIAAAGEL---GSTGVIIVPAFNGQVP-A---------------LPH-----TMETRDFLCEQFNEMGTFAAQ 157 (287)
T ss_dssp HHHHHHHHHHHHHHT---TCSEEEECSCCTTCCS-B---------------CCS-----SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCCEEEEecCcCCcCC-C---------------CCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999 8888777642211000 0 000 122234455566777778888
Q ss_pred cCCcEEEEEEe---c---ChHhHHHHHHHHhCCC
Q 040308 98 KNVNVKSEVVI---G---DAKEKVCELVEKLHAD 125 (167)
Q Consensus 98 ~~~~~~~~v~~---g---~~~~~I~~~a~~~~~d 125 (167)
+|+.+-.+... + ...+.+.+++++.+.+
T Consensus 158 ~Gv~l~lE~~~~~~~~~~~~~~~~~~ll~~v~~~ 191 (287)
T 3kws_A 158 HGTSVIFEPLNRKECFYLRQVADAASLCRDINNP 191 (287)
T ss_dssp TTCCEEECCCCTTTCSSCCCHHHHHHHHHHHCCT
T ss_pred cCCEEEEEecCcccCcccCCHHHHHHHHHHcCCC
Confidence 89876665332 2 3456777777766544
No 305
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=44.42 E-value=59 Score=21.42 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCCEEEEeecCC
Q 040308 114 KVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 114 ~I~~~a~~~~~dliV~g~~~~ 134 (167)
.+.+... .+|.||+|++-.
T Consensus 62 ~~~~~i~--~aD~ii~~sP~y 80 (197)
T 2vzf_A 62 EAVDATC--NADGLIVATPIY 80 (197)
T ss_dssp HHHHHHH--HCSEEEEEEECB
T ss_pred HHHHHHH--HCCEEEEEeCcc
Confidence 3334444 899999998753
No 306
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=44.24 E-value=32 Score=24.88 Aligned_cols=53 Identities=8% Similarity=-0.007 Sum_probs=38.3
Q ss_pred ecChHhHHHHHHHHhCCCEEEEeecCCCcc-ce-ecccchhHHHHh--cCCCCEEEE
Q 040308 108 IGDAKEKVCELVEKLHADLLVMGSHTFGPI-KR-MFLGSVSNYCAN--HAQCPVVVV 160 (167)
Q Consensus 108 ~g~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~-~~~gs~~~~i~~--~~~~pVliv 160 (167)
.-...++|++.|++.+..+|+-.+.+...+ .+ ..+......+.+ ++++||.+-
T Consensus 30 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValH 86 (288)
T 3q94_A 30 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 86 (288)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 337899999999999999999877643222 12 134556677778 889999875
No 307
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=44.24 E-value=79 Score=22.05 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhcCCcEEEEEE-ec-------C--hHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVV-IG-------D--AKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQC 155 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~-~g-------~--~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~ 155 (167)
+..+.+.+.+.++|+.+...+. .| + ...++.+.+.+.++|.|.++.. ..+ .....+....++
T Consensus 132 ~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~i 203 (273)
T 2qjg_A 132 RDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCPA 203 (273)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCCC
Confidence 3445556666667776654431 11 1 1233346678889999888841 111 234567777789
Q ss_pred CEEEEcC
Q 040308 156 PVVVVKG 162 (167)
Q Consensus 156 pVliv~~ 162 (167)
||+....
T Consensus 204 pvva~GG 210 (273)
T 2qjg_A 204 PVVVAGG 210 (273)
T ss_dssp CEEEECC
T ss_pred CEEEEeC
Confidence 9988654
No 308
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=44.23 E-value=54 Score=26.24 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=42.4
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEc
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVK 161 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~ 161 (167)
+...++..|.++... -..-|.++|++.+++.++|+|.+.......... +..+.+.+-+. .++||++-.
T Consensus 118 va~~L~~~G~eVi~L-G~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~--m~~~i~~Lr~~g~~i~ViVGG 186 (579)
T 3bul_A 118 VGVVLQCNNYEIVDL-GVMVPAEKILRTAKEVNADLIGLSGLITPSLDE--MVNVAKEMERQGFTIPLLIGG 186 (579)
T ss_dssp HHHHHHTTTCEEEEC-CSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHH--HHHHHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHH--HHHHHHHHHHcCCCCeEEEEc
Confidence 334556667664221 223689999999999999999998765433322 23344444332 348887754
No 309
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=44.21 E-value=73 Score=21.66 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040308 17 ESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICS 96 (167)
Q Consensus 17 ~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (167)
.+...++.++++|+.. +++...+|.-..+. ... .+...+...+.++++.+.++
T Consensus 82 ~~~~~~~~~i~~a~~l---G~~~v~~~~g~~~~-------------------~~~-----~~~~~~~~~~~l~~l~~~a~ 134 (260)
T 1k77_A 82 EAHADIDLALEYALAL---NCEQVHVMAGVVPA-------------------GED-----AERYRAVFIDNIRYAADRFA 134 (260)
T ss_dssp HHHHHHHHHHHHHHHT---TCSEEECCCCBCCT-------------------TSC-----HHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHc---CCCEEEECcCCCCC-------------------CCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999 88877665321100 000 12233445566677777788
Q ss_pred hcCCcEEEEEEe-----c---ChHhHHHHHHHHhCCC
Q 040308 97 EKNVNVKSEVVI-----G---DAKEKVCELVEKLHAD 125 (167)
Q Consensus 97 ~~~~~~~~~v~~-----g---~~~~~I~~~a~~~~~d 125 (167)
+.|+.+-.+-.. + ...+++.+++++.+.+
T Consensus 135 ~~gv~l~~E~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (260)
T 1k77_A 135 PHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARD 171 (260)
T ss_dssp GGTCEEEECCCCTTTSTTBSCCSHHHHHHHHHHHCCT
T ss_pred HcCCEEEEEeCCccCCCcCccCCHHHHHHHHHHhCCC
Confidence 888876555432 1 2345677777765543
No 310
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=44.15 E-value=47 Score=19.50 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHh-CCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKL-HADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGKG 164 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~-~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~~ 164 (167)
..+...|..+. ...+ .++.++...+. .+|+|++...-.....+. ...+.+-... .+||+++-...
T Consensus 23 ~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 23 STLTDAGFLVT---AVSS-GAKAIEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHHTTCEEE---EESS-HHHHHHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHHcCCEEE---EECC-HHHHHHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCCc
Confidence 33334465443 2333 44555666666 899999987643212221 2334444333 58998885543
No 311
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=44.06 E-value=65 Score=21.47 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=24.1
Q ss_pred HHHHHHhhhcCCcEEEEEEecChHhHHHHHHHH---hCCCEEEEe
Q 040308 89 DHALKICSEKNVNVKSEVVIGDAKEKVCELVEK---LHADLLVMG 130 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliV~g 130 (167)
..+...+++.|..+.....-.|-.+.|.+..++ .++|+||..
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 334456667787766554444434444443322 479998874
No 312
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=43.79 E-value=38 Score=23.45 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=36.2
Q ss_pred HHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhH
Q 040308 88 IDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSN 147 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~ 147 (167)
..++.+.+++.|..+-..+.-+.+.+.+..+.. .+|+|.+-+-..++-.+.|..+..+
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV~pGfggQ~f~~~~l~ 152 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIH--KADKITVMTVDPGFAGQPFIPEMLD 152 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCTTCSSCCCCTTHHH
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHh--cCCEEEEeeeccCcCCccccHHHHH
Confidence 455566667788777666544567777777776 7888866555444444444444433
No 313
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=43.72 E-value=64 Score=20.87 Aligned_cols=74 Identities=8% Similarity=0.067 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHH--HhcCCCCEE
Q 040308 83 ITQAIIDHALKICSEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYC--ANHAQCPVV 158 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i--~~~~~~pVl 158 (167)
..+...+.+.+.+.+.|+.+++.... |...+.|-+... +.|-||+.....+..+-- .-+.+ +...++|++
T Consensus 30 Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~--~~dgiiINpgA~THtSvA----lrDAl~~l~~~~~P~V 103 (151)
T 3u80_A 30 DLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAAD--EKTPVVMNPAAFTHYSYA----LADAAHMVIDENLPLM 103 (151)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHH--HTCCEEEECTTCCSCCHH----HHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhh--cCcEEEECcchhhhhhHH----HHHHHHHHhhcCCCEE
Confidence 35555666677777788887776432 456666665433 689999987665433211 11222 555689998
Q ss_pred EEcC
Q 040308 159 VVKG 162 (167)
Q Consensus 159 iv~~ 162 (167)
=|+-
T Consensus 104 EVHi 107 (151)
T 3u80_A 104 EVHI 107 (151)
T ss_dssp EEES
T ss_pred EEEc
Confidence 7763
No 314
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=43.58 E-value=78 Score=21.85 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++ ...+++.....++|-||+....... ...+ .+...++||+++-.
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~-~l~~~~iPvV~~~~ 95 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-------PRVQ-FLLKQKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-------HHHH-HHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-------HHHH-HHHhcCCCEEEECC
Confidence 34555556666677665443222333 3455666667789998886543221 1223 34456899988854
No 315
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=43.47 E-value=53 Score=19.91 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=33.5
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh-----cCCCCEEEEcCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN-----HAQCPVVVVKGK 163 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~-----~~~~pVliv~~~ 163 (167)
...+...|..+.. ..+ .++.++..++..+|+|++...-.+ ..+. ...+.+-. ...+|++++-..
T Consensus 31 ~~~L~~~g~~v~~---~~~-~~~al~~~~~~~~dlvl~D~~mp~-~~g~---~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 31 QRLLEKAGHKVLC---VNG-AEQVLDAMAEEDYDAVIVDLHMPG-MNGL---DMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHHC--CEEEE---ESS-HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHHHHcCCeEEE---eCC-HHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhchhccCCCCeEEEEeCC
Confidence 3444445554422 233 455666777789999999876432 2221 22333321 124788888654
No 316
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=43.46 E-value=54 Score=19.98 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
+++.+.+.+.+.+.|++++..-....... .. .++|.||+|+...
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~----~l--~~~d~iiig~pty 56 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVNID----EL--LNEDILILGCSAM 56 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCCHH----HH--TTCSEEEEEECCB
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCCHH----HH--hhCCEEEEEcCcc
Confidence 33444455555566776665433332121 12 3899999998753
No 317
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=43.41 E-value=52 Score=19.73 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
..+...|..+. ...+ ..+.++.+.+..+|+|++...-.+ ..+. ...+.+-....+|++++-..
T Consensus 22 ~~L~~~g~~v~---~~~~-~~~al~~~~~~~~dlvllD~~l~~-~~g~---~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 22 GFLEEKGISID---LAYN-CEEAIGKIFSNKYDLIFLEIILSD-GDGW---TLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHTTTCEEE---EESS-HHHHHHHHHHCCCSEEEEESEETT-EEHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHCCCEEE---EECC-HHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHccCCCCCEEEEEcC
Confidence 33444455432 2333 344556667778999999865332 1111 23444544447899888543
No 318
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=43.38 E-value=53 Score=19.82 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
++.+.+.+.+...|++++..-...... ... .++|.||+|++..
T Consensus 15 ~~a~~i~~~l~~~g~~v~~~~~~~~~~----~~l--~~~d~vi~g~p~y 57 (137)
T 2fz5_A 15 AMANEIEAAVKAAGADVESVRFEDTNV----DDV--ASKDVILLGCPAM 57 (137)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTSCCH----HHH--HTCSEEEEECCCB
T ss_pred HHHHHHHHHHHhCCCeEEEEEcccCCH----HHH--hcCCEEEEEcccc
Confidence 344444455555576666543322111 112 3899999998754
No 319
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=43.35 E-value=66 Score=22.80 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhc-CCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEK-NVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~-~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+. |+.+......+++.. ..++.....++|-||+........ ....+ .+....+||+++-.
T Consensus 22 ~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-----~~~~~-~~~~~~iPvV~~~~ 95 (325)
T 2x7x_A 22 KMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPM-----TPIVE-EAYQKGIPVILVDR 95 (325)
T ss_dssp HHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHH-----HHHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH-----HHHHH-HHHHCCCeEEEeCC
Confidence 3455556666677 777655433344433 344445567899998864321111 11222 23456899998854
No 320
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.31 E-value=88 Score=22.36 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
..+++.+.+.+.+.|..+......+++. ..+++.....++|-||+....... .....+...++||+++
T Consensus 84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--------AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--------HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--------HHHHHHHhCCCCEEEE
Confidence 3456667777788888775443333443 344555666789999886432211 1223456778999988
No 321
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=43.31 E-value=52 Score=19.71 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=28.3
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
..+.++......+|+|++...-.+ ..+. ...+.+-.. ..+||+++-..
T Consensus 36 ~~~al~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 36 GEECLEALNATPPDLVLLDIMMEP-MDGW---ETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEECC
Confidence 444556667778999999976432 2211 233444332 35899888543
No 322
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=43.30 E-value=68 Score=21.09 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHh--hhcCCcEEEEEEe--cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE
Q 040308 84 TQAIIDHALKIC--SEKNVNVKSEVVI--GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159 (167)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~~~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli 159 (167)
.+.+.+.+.+.+ .+.|+.+++.... |...+.|-+.. ..++|-||+.....+..+- -....+...++|++=
T Consensus 41 L~di~~~l~~~a~~~~~g~~v~~~QSN~EGeLId~Ih~A~-~~~~dgIIINpgAyTHtSv-----AlrDAL~~v~~P~VE 114 (167)
T 3kip_A 41 LSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRIHEAK-RQGVGFVVINAGAYTHTSV-----GIRDALLGTAIPFIE 114 (167)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEEECSCHHHHHHHHHHHH-HTTCCEEEEECGGGGGTCH-----HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHhccccCCcEEEEEecCCHHHHHHHHHHhh-hcCccEEEEccccceeccH-----HHHHHHHhcCCCEEE
Confidence 344555566666 5677777765432 44555555432 1479999998665432221 124456667899887
Q ss_pred EcC
Q 040308 160 VKG 162 (167)
Q Consensus 160 v~~ 162 (167)
|.-
T Consensus 115 VHi 117 (167)
T 3kip_A 115 VHI 117 (167)
T ss_dssp EES
T ss_pred EEc
Confidence 753
No 323
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=43.02 E-value=79 Score=21.75 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+.+.+.+.+.+.|..+......++.. ...++.....++|-||+-......... ..... .-+...++||+++-.
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~~-~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTP--NIGYY-LNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT--THHHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCC--cHHHH-HHHHhcCCCEEEEec
Confidence 3445666667777888776654444443 345566667799999986543221110 00122 234567899998864
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 108 ~ 108 (298)
T 3tb6_A 108 S 108 (298)
T ss_dssp C
T ss_pred C
Confidence 3
No 324
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=43.01 E-value=43 Score=23.38 Aligned_cols=66 Identities=8% Similarity=0.090 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+++.+.+.+.+.|..+......++. ...+++.....++|-||+....... . -..+...++||+++-
T Consensus 32 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---~------~~~~~~~~iPvV~~~ 99 (301)
T 3miz_A 32 IVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---V------DPESGDVSIPTVMIN 99 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---C------CCCCTTCCCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---H------HHHHHhCCCCEEEEC
Confidence 4555666667778777655444444 3456666777799998886543211 1 123345678888874
No 325
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=42.73 E-value=42 Score=23.01 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=14.7
Q ss_pred HhHHHHHHHHhCCCEEEEeecCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
...+.+... .+|.||+|++-.
T Consensus 70 ~~~~~~~l~--~AD~iI~~sP~y 90 (242)
T 1sqs_A 70 GGVIKKELL--ESDIIIISSPVY 90 (242)
T ss_dssp HHHHHHHHH--HCSEEEEEEEEC
T ss_pred HHHHHHHHH--HCCEEEEEcccc
Confidence 344555555 899999998753
No 326
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=42.71 E-value=51 Score=19.45 Aligned_cols=65 Identities=8% Similarity=0.107 Sum_probs=33.9
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
..+.+.|... .....+..+.+........+|+|++...-.+ ..+. .+.+.+-.. ..+||+++-..
T Consensus 23 ~~L~~~g~~~--v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 23 NTLSRLGYED--VLEAEHGVEAWEKLDANADTKVLITDWNMPE-MNGL---DLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp HHHHHTTCCC--EEEESSHHHHHHHHHHCTTCCEEEECSCCSS-SCHH---HHHHHHHTSTTCTTCCEEEEESC
T ss_pred HHHHHcCCcE--EEEeCCHHHHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCCeEEEEeCC
Confidence 3444455431 2233454555544444457999999865432 2211 234444432 35899988654
No 327
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=42.54 E-value=91 Score=22.28 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+.+.+.+... ..+++-.-+-..+..+.| .+.+++.++|-+.+-..-.....+--+-..-+.|...++.||++..
T Consensus 60 v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 135 (292)
T 3daq_A 60 ILKTVIDLVD-KRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYN 135 (292)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444444432 234543333223444444 3568888999998887643333221122344667788899999985
No 328
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=42.48 E-value=99 Score=22.73 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC
Q 040308 88 IDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
.+.+.+.+...|+.++..-........+.+... ++|.||+|+...
T Consensus 270 A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~gsp~~ 314 (402)
T 1e5d_A 270 ARVLAESFRDEGCTVKLMWCKACHHSQIMSEIS--DAGAVIVGSPTH 314 (402)
T ss_dssp HHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHH--TCSEEEEECCCB
T ss_pred HHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECCcc
Confidence 333444444456666554443344556665556 899999998643
No 329
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=42.28 E-value=79 Score=21.51 Aligned_cols=42 Identities=7% Similarity=0.209 Sum_probs=28.1
Q ss_pred HHHhhhcCCcEEEEEEec--C---hHhHHHHHHHHhCCCEEEEeecC
Q 040308 92 LKICSEKNVNVKSEVVIG--D---AKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g--~---~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+.+.+.|+++...-... + ..+++.+..++.++|++|+...+
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 43 LERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred HHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 455677888865421111 1 14678889999999999997653
No 330
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=42.28 E-value=62 Score=20.32 Aligned_cols=45 Identities=4% Similarity=-0.038 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcCCcEEEEEE--ecChHhHHHHHHHHhCCCEEEEeec
Q 040308 88 IDHALKICSEKNVNVKSEVV--IGDAKEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~--~g~~~~~I~~~a~~~~~dliV~g~~ 132 (167)
-+.+...+...|+.++.... .......|-+...+.-+=+||+|.+
T Consensus 24 A~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~k 70 (130)
T 1v95_A 24 AESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQ 70 (130)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHH
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEech
Confidence 34445555677999998775 4577788877777777778888864
No 331
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=41.90 E-value=97 Score=22.44 Aligned_cols=74 Identities=7% Similarity=-0.041 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHH--HHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKV--CELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I--~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.+.+.... .+++-.-+- .+..+.| .+.+++.++|-+.+...-.....+--+-..-..|...++.||++..
T Consensus 69 ~v~~~~v~~~~g-rvpViaGvg-~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 69 EEVRRTVEYVHG-RALVVAGIG-YATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp HHHHHHHHHHTT-SSEEEEEEC-SSHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHhCC-CCcEEEEeC-cCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 334444444332 344433332 2444444 3567888999999986543322221122334567888899999986
No 332
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=41.87 E-value=71 Score=20.84 Aligned_cols=40 Identities=5% Similarity=0.136 Sum_probs=22.6
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHH----HHHhCCCEEEEe
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCEL----VEKLHADLLVMG 130 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~----a~~~~~dliV~g 130 (167)
+.+.+.+.|..+.....-+|-.+.|.+. +++.++|+||..
T Consensus 33 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 33 LRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 4455566787776654444434444433 332259998874
No 333
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=41.82 E-value=87 Score=23.54 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEE---EEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLL---VMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dli---V~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
++++++.....+.|+++-+.+.+-...+.+ +|+| -+|++.... .....+....+|||.+=++
T Consensus 139 ~i~r~ll~~v~e~GlPvaTEvld~~~~qyv--------~Dllsw~aIGARt~es-------q~hre~Asgl~~PVg~Kng 203 (370)
T 1of8_A 139 QSARQLFVNLTNIGLPIGSEMLDTISPQYL--------ADLVSFGAIGARTTES-------QLHRELASGLSFPVGFKNG 203 (370)
T ss_dssp HHHHHHHHHHHTTTCCEEEECCSSSTHHHH--------GGGCSEEEECTTTTTC-------HHHHHHHHTCSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCceEEeecCcccHHHH--------HHHHhhccccCccccc-------HHHHHHHhcCCCeEEEcCC
Confidence 334444444468899998888776444333 7787 577664221 2334566778999987654
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 204 t 204 (370)
T 1of8_A 204 T 204 (370)
T ss_dssp T
T ss_pred C
Confidence 3
No 334
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.74 E-value=53 Score=19.32 Aligned_cols=23 Identities=0% Similarity=-0.068 Sum_probs=16.9
Q ss_pred HhHHHHHHHHhCCCEEEEeecCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
.++.++.+++..+|+|++...-.
T Consensus 39 ~~~a~~~l~~~~~dlii~d~~l~ 61 (132)
T 3lte_A 39 GFDAGIKLSTFEPAIMTLDLSMP 61 (132)
T ss_dssp HHHHHHHHHHTCCSEEEEESCBT
T ss_pred HHHHHHHHHhcCCCEEEEecCCC
Confidence 45555666778999999997643
No 335
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=41.73 E-value=98 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 14 GGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 14 ~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
....+++.+++|+++|++.+ ..+|+++|=-+
T Consensus 161 T~~~~eRiar~AFe~A~~r~--rkkVt~v~KaN 191 (354)
T 3blx_B 161 TRDASERVIRYAFEYARAIG--RPRVIVVHKST 191 (354)
T ss_dssp EHHHHHHHHHHHHHHHHHTT--CSEEEEEESCT
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCeEEEEECCc
Confidence 34668999999999999873 45688887444
No 336
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=41.64 E-value=16 Score=24.84 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=25.0
Q ss_pred HHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeec
Q 040308 88 IDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~ 132 (167)
.+.+.+.+++.|++++..-......+.+.+..+ ++|.|+++-.
T Consensus 46 ~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG 88 (206)
T 3l4e_A 46 VEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGG 88 (206)
T ss_dssp HHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCS
T ss_pred HHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCC
Confidence 444556666778765433112223445555666 7899999763
No 337
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=41.59 E-value=56 Score=19.63 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcCC
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKGK 163 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~~ 163 (167)
+...+...|..+.. ..-.-.++.++.+++..+|+||+...-.. ..+ -...+.+-. ...+||+++-..
T Consensus 21 l~~~L~~~~~~~~v--~~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 21 IRRVLDRKDIHCQL--EFVDNGAKALYQVQQAKYDLIILDIGLPI-ANG---FEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHTTCCEEE--EEESSHHHHHHHHTTCCCSEEEECTTCGG-GCH---HHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHhcCCCeeE--EEECCHHHHHHHhhcCCCCEEEEeCCCCC-CCH---HHHHHHHHhcccccCCCEEEEeCC
Confidence 34445555655332 22233455566677789999999876332 111 123444443 235899988654
No 338
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=41.44 E-value=68 Score=23.54 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCh----HhHHHHHHHHhCCCEEE-EeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDA----KEKVCELVEKLHADLLV-MGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~----~~~I~~~a~~~~~dliV-~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..+++.+.+++.|+.+......+++ .+.+ +.+++.++|+|| +|...- ..++..+.....+|++.||
T Consensus 49 ~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv--------~D~aK~vA~~~~~p~i~IP 119 (354)
T 3ce9_A 49 FGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKA--------IDAVKYMAFLRKLPFISVP 119 (354)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHH--------HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHH--------HHHHHHHHhhcCCCEEEec
Confidence 3455566666677776544313332 4444 556667889887 553221 2344444444579999999
Q ss_pred CCC
Q 040308 162 GKG 164 (167)
Q Consensus 162 ~~~ 164 (167)
...
T Consensus 120 TT~ 122 (354)
T 3ce9_A 120 TST 122 (354)
T ss_dssp SCC
T ss_pred Ccc
Confidence 765
No 339
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=41.42 E-value=54 Score=24.24 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=36.9
Q ss_pred hhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC---CccceecccchhHHHH-hcCCCCEEEEcC
Q 040308 95 CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF---GPIKRMFLGSVSNYCA-NHAQCPVVVVKG 162 (167)
Q Consensus 95 ~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~---~~~~~~~~gs~~~~i~-~~~~~pVliv~~ 162 (167)
+.+.|+++.... ++..-.+. ..+|.||+|+.+- +.+-.. .|+..-.++ ++.++|++++-+
T Consensus 188 L~~~GI~vtlI~--Dsa~~~~M-----~~Vd~VivGAd~V~anG~v~NK-iGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 188 LASYGIPVIYVV--DSAARHYM-----KMTDKVVMGADSITVNGAVINK-IGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp HHHTTCCEEEEC--GGGTTTTG-----GGCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTTCEEEEECC
T ss_pred HHhCCCCEEEEe--hHHHHHHH-----HhCCEEEECccEEecCCCEeec-ccHHHHHHHHHHcCCCEEEecc
Confidence 345688876542 22222333 4799999999862 223232 566655555 667799999843
No 340
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=41.40 E-value=14 Score=20.75 Aligned_cols=44 Identities=11% Similarity=-0.039 Sum_probs=31.4
Q ss_pred CCCCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 1 MSGNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
||.-||.|=+.-..+..-..|++.|+.-|..+ =..+.-+.|.+.
T Consensus 1 mm~vyKviElvGsS~~S~edAi~nAi~~AskT---l~ni~~~eV~e~ 44 (72)
T 3onr_A 1 MVSVYKVIDIIGTSPTSWEQAAAEAVQRARDS---VDDIRVARVIEQ 44 (72)
T ss_dssp -CCEEEEEEEEEEESSCHHHHHHHHHHHHHHH---CSCCCEEEEEEE
T ss_pred CCcEEEEEEEEECCCCCHHHHHHHHHHHHHhc---ccCCeEEEEEEE
Confidence 66677777666666667788888888888877 567777777653
No 341
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=41.35 E-value=94 Score=22.11 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=33.1
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCc-cceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGP-IKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-...... ..+--+-..-..|...++.||++..
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 129 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYN 129 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344443 466788899999988765443 2221112233567888899999975
No 342
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=41.27 E-value=39 Score=23.64 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=31.7
Q ss_pred EEecCh----HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 106 VVIGDA----KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 106 v~~g~~----~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
+..|+| ..++++.+.+.++|+|.+|-.........+ ...+.+ +..++|+++.+-
T Consensus 12 i~~gDP~~~~t~~~~~~l~~~GaD~ielG~S~Gvt~~~~~--~~v~~i-r~~~~Pivlm~y 69 (240)
T 1viz_A 12 VFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVL--RMMSKV-RRFLVPCVLEVS 69 (240)
T ss_dssp EEEECTTSCCCHHHHHHHHTSCCSEEEECC----CHHHHH--HHHHHH-TTSSSCEEEECS
T ss_pred EEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHh-hCcCCCEEEecC
Confidence 455555 345677777889999999963222222221 234444 336789998764
No 343
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=41.14 E-value=56 Score=19.51 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=28.5
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
..+.++.+++..+|+|++...-.+ ..+ -...+.+-.. ..+|++++-..
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIG-ENS---PNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CcH---HHHHHHHHcCcccCCCCEEEEecC
Confidence 455556667779999999976432 221 1344555544 45899888654
No 344
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=40.96 E-value=44 Score=21.84 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=10.1
Q ss_pred hCCCEEEEeecC
Q 040308 122 LHADLLVMGSHT 133 (167)
Q Consensus 122 ~~~dliV~g~~~ 133 (167)
..+|.||+|++-
T Consensus 67 ~~aD~ii~gsP~ 78 (198)
T 3b6i_A 67 ADYDAIIFGTPT 78 (198)
T ss_dssp GGCSEEEEEEEE
T ss_pred HHCCEEEEEeCh
Confidence 489999999874
No 345
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=40.94 E-value=86 Score=22.39 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEec-ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIG-DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+++.+.+.+.+.|..+......+ .....+++.....++|-||+... + ..+...++||+++-.
T Consensus 80 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~----~----------~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 80 SESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV----V----------GSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC----T----------TCCC-CCSCEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch----H----------HHHhhCCCCEEEECc
Confidence 3455566666677787765543333 12234556666678999888654 1 123345678777753
No 346
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=40.93 E-value=84 Score=22.49 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=32.5
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCc-cceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGP-IKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-...... ..+--+-..-..|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 344443 456777899998888765443 2221112233568888899999975
No 347
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=40.81 E-value=58 Score=19.52 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=33.1
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHH--HhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVE--KLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~--~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
..+...|..+. ...+..+ .++... ...+|+|++...-.. ..+. ...+.+-... .+||+++-..
T Consensus 21 ~~l~~~g~~v~---~~~~~~~-a~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 21 FLLEIDGNEVL---TASSSTE-GLRIFTENCNSIDVVITDMKMPK-LSGM---DILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp HHHHHTTCEEE---EESSHHH-HHHHHHHTTTTCCEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEEECT
T ss_pred HHHHhCCceEE---EeCCHHH-HHHHHHhCCCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEECC
Confidence 34444554332 2234334 444444 568999999976432 2211 2334444433 4888888654
No 348
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=40.76 E-value=84 Score=21.41 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=30.3
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
..+.++.+.+..+|+|++...-.+ ..++ .....+-...++||+++-..
T Consensus 70 ~~~al~~~~~~~~DlvllD~~lp~-~~G~---~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 70 AMNGLIKAREDHPDLILLDLGLPD-FDGG---DVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHHHHHSCCSEEEEECCSCH-HHHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCC-CCHH---HHHHHHHcCCCCCEEEEECC
Confidence 445556667778999999976432 1111 24455555556999988654
No 349
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=40.73 E-value=89 Score=21.69 Aligned_cols=72 Identities=8% Similarity=0.126 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
...+++.+.+.+.+.|..+......++. ...+++.....++|-||+-..... ......+...++||+++-
T Consensus 27 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 27 YINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEEEEC
Confidence 4456667777777888776443323322 345667777789999998643211 112234566789999986
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 99 ~~ 100 (295)
T 3hcw_A 99 KP 100 (295)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 350
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=40.70 E-value=84 Score=21.38 Aligned_cols=69 Identities=7% Similarity=0.012 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++. ...++.....++|-||+...... . ...+ .+...++||+++-.
T Consensus 20 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~-----~~~~-~l~~~~iPvV~~~~ 90 (275)
T 3d8u_A 20 HFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS--Q-----RTHQ-LLEASNTPVLEIAE 90 (275)
T ss_dssp HHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC--H-----HHHH-HHHHHTCCEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--H-----HHHH-HHHhCCCCEEEEee
Confidence 345555566666776654433333443 33455555668887777543221 1 1222 34456788888754
No 351
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=40.57 E-value=81 Score=21.14 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=28.6
Q ss_pred hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 113 EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 113 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
.+.++.+.+..+|+|++...-.+ ..++ .....+-....+||+++-..
T Consensus 39 ~~al~~l~~~~~dlvilD~~l~~-~~g~---~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 39 TQALTAVRELRPDLVLLDLMLPG-MNGI---DVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp GGHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHTTCCCCEEEEEET
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCCcEEEEeCC
Confidence 34445666778999999976432 2211 23444544457999988543
No 352
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=40.54 E-value=91 Score=21.74 Aligned_cols=81 Identities=15% Similarity=0.062 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040308 18 SMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSE 97 (167)
Q Consensus 18 s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (167)
+...++.++++|+.. +++.++++..... . ... .+...+...+.++.+.+.+++
T Consensus 106 ~~~~~~~~i~~A~~l---G~~~v~~~~~~~~--~-----------------~~~-----~~~~~~~~~~~l~~l~~~a~~ 158 (295)
T 3cqj_A 106 GLEIMRKAIQFAQDV---GIRVIQLAGYDVY--Y-----------------QEA-----NNETRRRFRDGLKESVEMASR 158 (295)
T ss_dssp HHHHHHHHHHHHHHH---TCCEEEECCCSCS--S-----------------SCC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCCEEEECCCCCC--c-----------------CcC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 346688899999999 8888776522110 0 000 011223444556677777778
Q ss_pred cCCcEEEEEEec---ChHhHHHHHHHHhCCC
Q 040308 98 KNVNVKSEVVIG---DAKEKVCELVEKLHAD 125 (167)
Q Consensus 98 ~~~~~~~~v~~g---~~~~~I~~~a~~~~~d 125 (167)
.|+.+-.+...+ ...+.+.+++++.+.+
T Consensus 159 ~Gv~l~lEn~~~~~~~~~~~~~~l~~~v~~~ 189 (295)
T 3cqj_A 159 AQVTLAMEIMDYPLMNSISKALGYAHYLNNP 189 (295)
T ss_dssp HTCEEEEECCSSGGGCSHHHHHHHHHHHCCT
T ss_pred hCCEEEEeeCCCcccCCHHHHHHHHHhcCCC
Confidence 887766654443 2356677777765443
No 353
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=40.47 E-value=1e+02 Score=22.17 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRI 83 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
..+||.|-+.++.++..++-.+..- ... ++++.++-.-.+..
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l---~~~i~~Visn~~~a---------------------------------- 128 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRL-GEL---DMEVVGIISNHPRE---------------------------------- 128 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHH-TSS---CCEEEEEEESSCGG----------------------------------
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHC-CCC---CeEEEEEEeCChHH----------------------------------
Confidence 3567888888887777776666542 223 35555443322110
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEec----ChHhHHHHHHHHhCCCEEEEeecC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIG----DAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g----~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
+.+.++++|+++...-... ...+++++..++.++|++|+....
T Consensus 129 -------~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagym 175 (287)
T 3nrb_A 129 -------ALSVSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYM 175 (287)
T ss_dssp -------GCCCCCCTTSCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred -------HHHHHHHcCCCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEhhhhh
Confidence 1234556777765432111 123567888888889999887553
No 354
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=40.26 E-value=43 Score=22.96 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=12.7
Q ss_pred CCcEEEEeecCChhHHHHHHH
Q 040308 4 NLGCVIVAVDGGEESMDALRW 24 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~ 24 (167)
.|+.|+|.--.+..-+..+..
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~ 23 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYIST 23 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHH
T ss_pred CCcEEEEEeCCCCCCHHHHHH
Confidence 467888777666554444433
No 355
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=40.20 E-value=53 Score=18.90 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=28.3
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
.++.++...+..+|++++...-.+ ..+. ...+.+-.. ..+|++++-..
T Consensus 36 ~~~a~~~~~~~~~dlil~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 36 GREAVEKYKELKPDIVTMDITMPE-MNGI---DAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCGG-GCHH---HHHHHHHHHCTTCCEEEEECT
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CcHH---HHHHHHHhhCCCCeEEEEeCC
Confidence 344555666778999999976432 2211 234444433 34888888544
No 356
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=40.13 E-value=55 Score=19.12 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
..+...|..+. ...+ .++.++..++..+|+|++...-.+ ..++ ...+.+-.. ..+||+++-..
T Consensus 20 ~~l~~~g~~v~---~~~~-~~~al~~l~~~~~dlvllD~~~p~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 20 FNLKKEGYEVI---EAEN-GQIALEKLSEFTPDLIVLXIMMPV-MDGF---TVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp HHHHHTTCEEE---EESS-HHHHHHHHTTBCCSEEEECSCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESC
T ss_pred HHHHHCCcEEE---EeCC-HHHHHHHHHhcCCCEEEEeccCCC-CcHH---HHHHHHHhcccccCCCEEEEecC
Confidence 34445565432 2234 444556667789999999865332 2221 234444332 35899888654
No 357
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=40.00 E-value=80 Score=22.54 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=32.9
Q ss_pred ChHhHH--HHHHHHhCCCEEEEeecCCCc-cceecccchhHHHHhcCCCCEEEEc
Q 040308 110 DAKEKV--CELVEKLHADLLVMGSHTFGP-IKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 110 ~~~~~I--~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
+..+.| .+.+++.++|-+.+-...... ..+--+-..-..|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYN 130 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 344443 466778899999888765443 2221112233568888999999975
No 358
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=39.97 E-value=52 Score=18.78 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=27.6
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKG 162 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~ 162 (167)
.++.++...+..+|++++...-.+ ..+. ...+.+-.. ..+|++++-.
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 34 GEEALKKFFSGNYDLVILDIEMPG-ISGL---EVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEECCCCC-CCHH---HHHHHHHccCCCCeEEEEEC
Confidence 455556666778999999876432 1111 233444333 3488888754
No 359
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=39.90 E-value=61 Score=21.00 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=18.4
Q ss_pred hhhcCCcEEEEEEecChHhHHHHHHHH---hCCCEEEEe
Q 040308 95 CSEKNVNVKSEVVIGDAKEKVCELVEK---LHADLLVMG 130 (167)
Q Consensus 95 ~~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliV~g 130 (167)
+.+.|..+.....-+|-.+.|.+..++ .++|+||..
T Consensus 38 l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 38 LQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp ---CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 566787766554444434444433332 249998774
No 360
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=39.89 E-value=47 Score=24.73 Aligned_cols=70 Identities=7% Similarity=-0.014 Sum_probs=42.9
Q ss_pred HhhhcCCcEEEEE-EecChHhHHHHHHHHhCCCEEEEeecCCCcc-c-----e-----ecccchhHHHHhcCCCCEEEEc
Q 040308 94 ICSEKNVNVKSEV-VIGDAKEKVCELVEKLHADLLVMGSHTFGPI-K-----R-----MFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 94 ~~~~~~~~~~~~v-~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~-~-----~-----~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.+.+.-+-..- ..-...++|++.|++.+..+|+-.+.+...+ . . ..+...+..+..+.++||.+-=
T Consensus 15 ~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVaLHl 94 (349)
T 3elf_A 15 QAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVALHT 94 (349)
T ss_dssp HHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred HHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEEEEC
Confidence 3344444333332 3337899999999999999998776532111 1 1 0123445667788899997754
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 95 DH 96 (349)
T 3elf_A 95 DH 96 (349)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 361
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=39.83 E-value=40 Score=24.52 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=29.2
Q ss_pred cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 109 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
|.......+......+|.||+-+...+. .+.+.+++.+||+
T Consensus 78 gEsl~DTarvLs~~~~D~iviR~~~~~~---------~~~la~~~~vPVI 118 (304)
T 3r7f_A 78 GETLYDTIRTLESIGVDVCVIRHSEDEY---------YEELVSQVNIPIL 118 (304)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECSSTTC---------HHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHhcCCEEEEecCChhH---------HHHHHHhCCCCEE
Confidence 5556666666777779999998775433 3556778899965
No 362
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=39.75 E-value=53 Score=21.90 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=25.2
Q ss_pred CCcEEEEeecC-Ch--hHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 4 NLGCVIVAVDG-GE--ESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 4 ~~~~ILv~id~-s~--~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
|+|+|+|-+.. .+ .+...++++..++. . +.++.++.+.+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~---~~~~~~idl~d 42 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE-G---RLEFHLLHIGD 42 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT-T---TEEEEECCGGG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc-C---CCEEEEEeccc
Confidence 57888876643 22 35677888887775 3 47887776544
No 363
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=39.64 E-value=29 Score=25.41 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=36.9
Q ss_pred CcEEEEEEec----ChHhHHHHHHHHhCCCEEEEeecC--CCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 100 VNVKSEVVIG----DAKEKVCELVEKLHADLLVMGSHT--FGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 100 ~~~~~~v~~g----~~~~~I~~~a~~~~~dliV~g~~~--~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+++.....+ .+..+.++..+ ++|+||+|... .+-...++...+.+.| +++ |++.|.+
T Consensus 158 ~~I~~v~l~~~~~~~a~p~vl~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~Al-~~s--~kV~v~n 221 (311)
T 3c3d_A 158 PDVRGVDIRGVSEASISPKVLEAFE--KEENILIGPSNPITSIGPIISLPGMRELL-KKK--KVVAVSP 221 (311)
T ss_dssp SCEEEEEEETTTTCCCCHHHHHHHH--HCCEEEECSSCTTTTSHHHHHSTTHHHHH-HTS--EEEEECC
T ss_pred CCeeEEEEcCccCCCCCHHHHHHHH--hCCEEEECCCCCHHHHhhhcCchhHHHHH-HcC--CEEEEcc
Confidence 4556555543 35667888888 89999999654 2333444556666664 444 7776654
No 364
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=39.59 E-value=77 Score=20.62 Aligned_cols=43 Identities=23% Similarity=0.119 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhh-cCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC
Q 040308 86 AIIDHALKICSE-KNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
++.+.+.+.+.+ .|++++..-..... .+... ++|.||+|+.-.
T Consensus 20 ~~a~~i~~~l~~~~g~~v~~~~l~~~~----~~~l~--~aD~ii~gsP~y 63 (188)
T 2ark_A 20 KMAELVAEGARSLEGTEVRLKHVDEAT----KEDVL--WADGLAVGSPTN 63 (188)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEETTTCC----HHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHHhhcCCCeEEEEEhhhCC----HHHHH--hCCEEEEEeCcc
Confidence 344444445555 56665554332222 12223 789999998754
No 365
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=39.58 E-value=77 Score=20.59 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=28.6
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..+.++.+.+..+|+|++...-.+ ..++ .....+-...+.||+++-
T Consensus 47 ~~~al~~~~~~~~dlvi~D~~~p~-~~g~---~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 47 GQEAVELAELHKPDLVIMDVKMPR-RDGI---DAASEIASKRIAPIVVLT 92 (205)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEe
Confidence 344556667778999999976432 2211 244555555567888874
No 366
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.54 E-value=54 Score=19.19 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=21.4
Q ss_pred hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 113 EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 113 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
+++.+..+...+-+||+......... ..........++|+..+
T Consensus 21 ~~v~kai~~gka~lViiA~D~~~~~~-----~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNAPKEIK-----DDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCCCHHHH-----HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCccEEEEeCCCCHHHH-----HHHHHHHHHcCCCEEEe
Confidence 44555556666666666655322111 12233444556666555
No 367
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=39.46 E-value=38 Score=22.98 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=27.7
Q ss_pred CCCCCcEEEEeecCChhHH-HHHHHHHHhccccCCCCCeEEEEE
Q 040308 1 MSGNLGCVIVAVDGGEESM-DALRWAIDNLKLRSPAPGSFIVLH 43 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~~s~-~al~~a~~la~~~~~~~~~l~~l~ 43 (167)
|...-++|++++.++-... .+++..-.|.+ . +.+++++-
T Consensus 3 m~l~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~---g~eV~vv~ 42 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGSHCTYHEVLPQMERLVE-L---GAKVTPFV 42 (201)
T ss_dssp CCCTTCEEEEECCSCGGGGGGTHHHHHHHHH-T---TCEEEEEC
T ss_pred CCcCCCEEEEEEEChHHHHHHHHHHHHHHhh-C---CCEEEEEE
Confidence 3345589999999997777 77777766544 4 56777664
No 368
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=39.46 E-value=1.2e+02 Score=22.87 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
.-++++|++.+..+|..++..+.. . +.+++.+|+..
T Consensus 186 ~~~kvlvalSGGvDS~vll~ll~~----~---G~~v~av~v~~ 221 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMK----R---GVSVEAVHFHS 221 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHH----B---TEEEEEEEEEC
T ss_pred CCCeEEEEeCCCChHHHHHHHHHH----c---CCcEEEEEEeC
Confidence 357899999999998877766654 4 57899999875
No 369
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=39.33 E-value=88 Score=21.23 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhcCCcEEEE-EEecChHhHHHHHHHHhCCCEEEEeecC-CCccceecccchhHHHHhcCCCCEEEE
Q 040308 84 TQAIIDHALKICSEKNVNVKSE-VVIGDAKEKVCELVEKLHADLLVMGSHT-FGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliV~g~~~-~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
.+..++.+.+.+.+.+++--.. ...|..+....+.. .+..+|+++.+. ......+-+..-..+-+....++|+.-
T Consensus 28 T~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~ 104 (201)
T 1vp8_A 28 TEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQ 104 (201)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEE
Confidence 4555666666666667652111 23366676666655 368899998653 232323445666677777777777654
No 370
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=39.17 E-value=36 Score=20.77 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=24.0
Q ss_pred HHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC
Q 040308 90 HALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+++.+.+.|+++..+.....-.+.-+...+-..+|+||+....
T Consensus 27 aL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 27 ALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp HHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred HHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 34456667787776664443222222222222279999998764
No 371
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=39.17 E-value=1e+02 Score=22.89 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+++.+.+.+.+.|..+...... .....++.....++|-||+... .......+...++||+++-.
T Consensus 40 ~~l~~gi~~~a~~~g~~~~i~~~~--~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 40 RQVVEGVGEYLQASQSEWDIFIEE--DFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECC---CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEecC--CccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEecC
Confidence 344555666666667666544322 2234456666779999998311 11223456677899998853
No 372
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=39.11 E-value=1.3e+02 Score=23.65 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 16 EESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 16 ~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
..+++.+++|+++|+..+ ..+|+++|=-+
T Consensus 165 ~~ieRIar~AFe~A~~r~--rkkVT~V~KaN 193 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEG--RKKVHCATKSN 193 (496)
T ss_dssp HHHHHHHHHHHHHHHHTT--CCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcC--CCcEEEEECCC
Confidence 678999999999999872 35788887444
No 373
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.08 E-value=97 Score=21.61 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccc-hhHHHHhcCCCCEEEEc
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGS-VSNYCANHAQCPVVVVK 161 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs-~~~~i~~~~~~pVliv~ 161 (167)
..+++.+.+.+.+.|..+......++. ...+++.....++|-||+....... . ..+.+ .. ++||+++-
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~~l-~~-~iPvV~i~ 101 (303)
T 3kke_A 31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD-------DDMLAAV-LE-GVPAVTIN 101 (303)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC-------HHHHHHH-HT-TSCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc-------HHHHHHH-hC-CCCEEEEC
Confidence 345566667777788877655444443 3456677777899999987543221 1 23434 44 99999886
Q ss_pred CC
Q 040308 162 GK 163 (167)
Q Consensus 162 ~~ 163 (167)
..
T Consensus 102 ~~ 103 (303)
T 3kke_A 102 SR 103 (303)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 374
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=38.99 E-value=31 Score=20.88 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred HHHhhhcCCcEEEEEEecC-hHhHHHH-HHHHhCCCEEEEeecC
Q 040308 92 LKICSEKNVNVKSEVVIGD-AKEKVCE-LVEKLHADLLVMGSHT 133 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~-~~~~I~~-~a~~~~~dliV~g~~~ 133 (167)
++.+.+.|+++..+..... +.+.+.. ... .+|+||+....
T Consensus 26 ~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 67 (106)
T 2r48_A 26 QKAADRLGVSIKVETQGGIGVENKLTEEEIR--EADAIIIAADR 67 (106)
T ss_dssp HHHHHHHTCEEEEEEEETTEEESCCCHHHHH--HCSEEEEEESS
T ss_pred HHHHHHCCCeEEEEecCCCCccCCCCHHHHH--hCCEEEEEeCC
Confidence 3444556766666544432 2223332 344 89999998764
No 375
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=38.64 E-value=67 Score=23.22 Aligned_cols=41 Identities=15% Similarity=-0.013 Sum_probs=28.5
Q ss_pred cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHH-HHhcCCCCEE
Q 040308 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNY-CANHAQCPVV 158 (167)
Q Consensus 109 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~-i~~~~~~pVl 158 (167)
|.......+......+|.||+-+...+.. +. +.+++.+||+
T Consensus 76 gEsl~DTarvls~~~~D~iviR~~~~~~~---------~~~la~~~~vPVI 117 (291)
T 3d6n_B 76 GESFFDTLKTFEGLGFDYVVFRVPFVFFP---------YKEIVKSLNLRLV 117 (291)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEESSCCCS---------CHHHHHTCSSEEE
T ss_pred CCcHHHHHHHHHHhcCCEEEEEcCChHHH---------HHHHHHhCCCCEE
Confidence 45566666666666689999998765443 34 6678889986
No 376
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=38.41 E-value=1.1e+02 Score=22.01 Aligned_cols=69 Identities=9% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
..+++.+.+.+.+.|..+.......++ ...+++.....++|-||+....... ..-..+...++||+++-
T Consensus 86 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~--------~~~~~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 86 AQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE--------QTIRLLQRASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH--------HHHHHHHHCCSCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH--------HHHHHHHhCCCCEEEEC
Confidence 345666677777888777554433343 3355566667799998886432211 12234567789999883
No 377
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=38.25 E-value=96 Score=21.35 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++. ..+++.....++|-||+...... . ...+.+ . .++||+++-.
T Consensus 25 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-----~~~~~l-~-~~iPvV~~~~ 94 (285)
T 3c3k_A 25 AVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE--L-----PELQNI-I-GAFPWVQCAE 94 (285)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG--H-----HHHHHH-H-TTSSEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC--h-----HHHHHH-h-cCCCEEEEcc
Confidence 345555566666787765543334443 34556666678998888543211 1 122333 4 7899998854
No 378
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=38.16 E-value=67 Score=19.54 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=24.9
Q ss_pred HhHHHHHHHH-hCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 112 KEKVCELVEK-LHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
.++.++.+++ ..+|+||+...-.. ..+. ...+.+-... .+||+++-..
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 38 VSDALAFLEADNTVDLILLDVNLPD-AEAI---DGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHHTTCCCSEEEECC-------CH---HHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCC-CchH---HHHHHHHHhCCCCeEEEEeCC
Confidence 4555566666 78999999876432 1111 2344444433 4888887543
No 379
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=38.14 E-value=97 Score=21.34 Aligned_cols=56 Identities=7% Similarity=0.034 Sum_probs=35.9
Q ss_pred HhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHH
Q 040308 94 ICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYC 149 (167)
Q Consensus 94 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i 149 (167)
..++.|..+-..+.-+.+.+.+..+..-..+|+|.+.+-.+++-.+.|..+..++|
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki 164 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKV 164 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHH
Confidence 55667877666553356767666665533589998887767666666655555543
No 380
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=38.13 E-value=72 Score=19.88 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=30.2
Q ss_pred hHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 111 AKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 111 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
-..+.++.+.+..+|+|++...-.+ ..+. ...+.+-...++|++++-.
T Consensus 59 ~~~~al~~l~~~~~dlvilD~~l~~-~~g~---~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 59 DGLEAVEKAIELKPDVITMDIEMPN-LNGI---EALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp SHHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHHSCCEEEEEES
T ss_pred CHHHHHHHhccCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCceEEEEec
Confidence 3455556667778999999976432 2211 2445555566688888754
No 381
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=38.01 E-value=1e+02 Score=21.67 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=32.0
Q ss_pred hHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 111 AKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 111 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
..+.|.+..++.++|+|+.-...-........+..+...++..++|++..
T Consensus 133 ~~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 182 (270)
T 3dfi_A 133 IREDIESMIAECDPTLVLTCVAIGKHPDHKATRDATLLAARERGIPLRLW 182 (270)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCChhHHHHHHHHHHHHHHcCCCeeEe
Confidence 44556678888999998886443333444445555566666667776554
No 382
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=37.99 E-value=39 Score=23.71 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeec
Q 040308 88 IDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~ 132 (167)
++++++...+.|.++...+.-| ...+-+..+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~~~~~I~VDGG-I~~~ti~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTDRDILLEIDGG-VNPYNIAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHTSCCEEEEESS-CCTTTHHHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcCCCeeEEEECC-cCHHHHHHHHHcCCCEEEEehH
Confidence 3445555555565555444444 3334455566679999999963
No 383
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=37.87 E-value=1e+02 Score=23.40 Aligned_cols=29 Identities=3% Similarity=-0.268 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
...+++.+++|+++|+.. +.+|+++|=-+
T Consensus 183 ~~~~eRiar~AFe~A~~r---~~kVt~v~KaN 211 (402)
T 2uxq_A 183 VASIGHFARACFEYSLDQ---KIDCWFATKDT 211 (402)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHc---CCcEEEEECCC
Confidence 367899999999999988 67888887444
No 384
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=37.70 E-value=1.4e+02 Score=22.99 Aligned_cols=49 Identities=8% Similarity=0.077 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCcEEEEEEecChH---hHHHHHHHHhCCCEEEEeecCCCccc
Q 040308 90 HALKICSEKNVNVKSEVVIGDAK---EKVCELVEKLHADLLVMGSHTFGPIK 138 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~~~---~~I~~~a~~~~~dliV~g~~~~~~~~ 138 (167)
++..+....++++.......++. ...++.++..++|+||+-+.++....
T Consensus 146 qL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d 197 (443)
T 3dm5_A 146 QLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKED 197 (443)
T ss_dssp HHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCC
T ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccch
Confidence 33445555566643321222443 34455666677999999888765543
No 385
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=37.63 E-value=64 Score=19.15 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=24.6
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
.++.+..+.+..+|+|| ..+.+.+ ...+.+-... .+||+++-..
T Consensus 51 ~~~al~~l~~~~~dlvi--~~~~~g~------~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 51 LEDGEYLMDIRNYDLVM--VSDKNAL------SFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHHHSCCSEEE--ECSTTHH------HHHHHHHHHSTTSEEEEEESS
T ss_pred HHHHHHHHHcCCCCEEE--EcCccHH------HHHHHHHhcCCCccEEEEeCC
Confidence 44555666777899999 2222211 2333333334 6888887543
No 386
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=37.52 E-value=1.1e+02 Score=21.78 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+++.+.+.+.+.|..+......++. ...+++.....++|-||+....... .....+....+||+++-
T Consensus 79 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~ 148 (339)
T 3h5o_A 79 ETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE--------PFERILSQHALPVVYMM 148 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--------THHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--------HHHHHHhcCCCCEEEEe
Confidence 34556666777778776554333343 3345566666789988886533211 12245567789999884
No 387
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=37.41 E-value=79 Score=20.54 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCEEEEeecCC
Q 040308 114 KVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 114 ~I~~~a~~~~~dliV~g~~~~ 134 (167)
.+.+... .+|.||++++-.
T Consensus 79 ~~~~~l~--~aD~iv~~~P~y 97 (201)
T 1t5b_A 79 ELIAELK--AHDVIVIAAPMY 97 (201)
T ss_dssp HHHHHHH--HCSEEEEECCCB
T ss_pred HHHHHHH--hCCEEEEEeCcc
Confidence 3444444 899999998753
No 388
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=37.39 E-value=24 Score=21.33 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=24.4
Q ss_pred HHHHHhhhcCCcEEEEEEecC-hHhHHH-HHHHHhCCCEEEEeecCC
Q 040308 90 HALKICSEKNVNVKSEVVIGD-AKEKVC-ELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~-~~~~I~-~~a~~~~~dliV~g~~~~ 134 (167)
.+++.+.+.|++++....... +.+.+. +... .+|+||+.....
T Consensus 24 aLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d~~ 68 (106)
T 2m1z_A 24 ALKKGAKKMGNLIKVETQGATGIENELTEKDVN--IGEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH--HCSEEEEEESSC
T ss_pred HHHHHHHHCCCEEEEEEecCccccCCCCHHHHh--hCCEEEEecccc
Confidence 334555566777666544422 222231 3334 899999998753
No 389
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=37.20 E-value=77 Score=20.47 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=24.5
Q ss_pred hhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEee
Q 040308 95 CSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGS 131 (167)
Q Consensus 95 ~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~ 131 (167)
+++.|++++.... +...++...+...+|+++.+.
T Consensus 36 ~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 36 AKELKLDYELKPM---DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp HHHHTCCEEEEEE---CGGGHHHHHHTTSSSEEEEEE
T ss_pred HHHhCCEEEEEEC---CHHHHHHHHhCCCCCEEEEcC
Confidence 3344777776643 577888888899999998653
No 390
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=37.01 E-value=86 Score=21.77 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHH--hCCCEEEEeec
Q 040308 88 IDHALKICSEKNVNVKSEVVIGDAKEKVCELVEK--LHADLLVMGSH 132 (167)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~--~~~dliV~g~~ 132 (167)
++++++...+.+..+.. ...|....+-+..+.+ .++|.+|+|+.
T Consensus 174 i~~lr~~~~~~~~~~~I-~vdGGI~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 174 VIQVEKRLGNRRVEKLI-NIDGSMTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHGGGGGGCEE-EEESSCCHHHHHHHHHSSSCCCCEEECGG
T ss_pred HHHHHHHHHhcCCCceE-EEECCcCHHHHHHHHHhCCCCcEEEEeeH
Confidence 34455555555555443 3455544444555555 68999999965
No 391
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=36.55 E-value=61 Score=21.89 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=27.4
Q ss_pred EEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEE
Q 040308 7 CVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLH 43 (167)
Q Consensus 7 ~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~ 43 (167)
||++++.++-.+..+++..-.|.+.. +.+++++-
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~~~---g~~V~vv~ 35 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREMP---NVETHLVM 35 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCT---TCEEEEEE
T ss_pred EEEEEEeChHHHHHHHHHHHHHHhcc---CCEEEEEE
Confidence 79999999998888888888887664 56776663
No 392
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=36.53 E-value=85 Score=20.23 Aligned_cols=39 Identities=10% Similarity=-0.054 Sum_probs=29.4
Q ss_pred CcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeCC
Q 040308 5 LGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQPP 47 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~~ 47 (167)
-+.+++.+..+..+...++. ++.|+.. +++++++.-.+.
T Consensus 87 ~~d~~i~iS~sG~t~~~~~~-~~~ak~~---g~~vi~IT~~~~ 125 (187)
T 3sho_A 87 PTDLMIGVSVWRYLRDTVAA-LAGAAER---GVPTMALTDSSV 125 (187)
T ss_dssp TTEEEEEECCSSCCHHHHHH-HHHHHHT---TCCEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHHH-HHHHHHC---CCCEEEEeCCCC
Confidence 36799999999888776665 4678888 788888775443
No 393
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=36.32 E-value=67 Score=22.29 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCCcEEEEE-EecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 87 IIDHALKICSEKNVNVKSEV-VIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v-~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.+.+.+.+.+.|+.+.... ..+++.. ..++.....++|.||+........ .... ..+....+||+.+-..
T Consensus 22 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-----~~~~-~~~~~~~ipvV~~~~~ 95 (303)
T 3d02_A 22 MGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVL-----EPVF-KKARDAGIVVLTNESP 95 (303)
T ss_dssp HHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHH-----HHHH-HHHHHTTCEEEEESCT
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH-----HHHH-HHHHHCCCeEEEEecC
Confidence 44555555666676654322 2234433 234444456899998875321111 0111 2345568999888543
No 394
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=36.15 E-value=1.1e+02 Score=23.42 Aligned_cols=29 Identities=3% Similarity=-0.153 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
...+++.+++|+++|++. +.+|+++|=-+
T Consensus 202 ~~~ieRIar~AFe~A~~r---~~kVt~v~KaN 230 (427)
T 2qfy_A 202 DESIEGFAHSSFKLAIDK---KLNLFLSTKNT 230 (427)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHh---CCceEEEECCc
Confidence 367899999999999998 67888776444
No 395
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=36.01 E-value=52 Score=21.37 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHhhhcCCcEEEEEEecChHhHHHHHHHH---hCCCEEEEe
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKEKVCELVEK---LHADLLVMG 130 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~---~~~dliV~g 130 (167)
+...+++.|.++.....-.|- +.|.+..++ .++|+||..
T Consensus 32 l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 32 ITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp HHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEEC
Confidence 345556677665544333333 555554433 379998875
No 396
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=35.85 E-value=92 Score=20.43 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCCEEEEeecCCCccceecccchhHHHHh-----cCCCCEEEEcCCC
Q 040308 123 HADLLVMGSHTFGPIKRMFLGSVSNYCAN-----HAQCPVVVVKGKG 164 (167)
Q Consensus 123 ~~dliV~g~~~~~~~~~~~~gs~~~~i~~-----~~~~pVliv~~~~ 164 (167)
.+|+|++...-.. ..++ .+.+.+-. ...+||+++-...
T Consensus 119 ~~dlillD~~lp~-~~G~---el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 119 PFDYIFMDCQMPE-MDGY---EATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp SCSEEEEESCCSS-SCHH---HHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCEEEEcCCCCC-CCHH---HHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 8999999976432 2221 23344433 2569999987543
No 397
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=35.83 E-value=1e+02 Score=21.01 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040308 18 SMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSE 97 (167)
Q Consensus 18 s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (167)
+...++.++++|+.. +++...+|.-..+... .. .+...+...+.++++.+.+++
T Consensus 81 ~~~~~~~~i~~a~~l---G~~~v~~~~g~~~~~~------------------~~-----~~~~~~~~~~~l~~l~~~a~~ 134 (275)
T 3qc0_A 81 AIDDNRRAVDEAAEL---GADCLVLVAGGLPGGS------------------KN-----IDAARRMVVEGIAAVLPHARA 134 (275)
T ss_dssp HHHHHHHHHHHHHHT---TCSCEEEECBCCCTTC------------------CC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEeeCCCCCCC------------------cC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999 8888888753211000 00 122234455666777777778
Q ss_pred cCCcEEEEEEec---------ChHhHHHHHHHHhCC
Q 040308 98 KNVNVKSEVVIG---------DAKEKVCELVEKLHA 124 (167)
Q Consensus 98 ~~~~~~~~v~~g---------~~~~~I~~~a~~~~~ 124 (167)
.|+.+-.+-..+ ...+.+.+++++.+.
T Consensus 135 ~gv~l~lE~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (275)
T 3qc0_A 135 AGVPLAIEPLHPMYAADRACVNTLGQALDICETLGP 170 (275)
T ss_dssp HTCCEEECCCCGGGTTTTBSCCCHHHHHHHHHHHCT
T ss_pred cCCEEEEeECCCcccCCccccCCHHHHHHHHHHhCc
Confidence 888766553221 235566667665543
No 398
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=35.66 E-value=75 Score=19.31 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=29.8
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
.-.++.++.+++..+|+|++...-.+ ..+. ...+.+-... .+||+++-..
T Consensus 48 ~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 48 DDGAAALELIKAHLPDVALLDYRMPG-MDGA---QVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp SSHHHHHHHHHHHCCSEEEEETTCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCeEEEEEcc
Confidence 33455566677779999999976432 2211 2344444433 4888887654
No 399
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=35.63 E-value=17 Score=22.15 Aligned_cols=38 Identities=5% Similarity=0.093 Sum_probs=23.6
Q ss_pred CcEEEEeecCChhH----HHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 5 LGCVIVAVDGGEES----MDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 5 ~~~ILv~id~s~~s----~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
||++++.+..+|+. ..++++|...+. + +-++.++..-+
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a-~---~~~v~vff~~D 42 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSA-L---TDDLAVFFIAD 42 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHT-T---CSCEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHh-C---CCCEEEEEehH
Confidence 57899999887764 445666655443 2 34665555444
No 400
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=35.52 E-value=31 Score=20.89 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred HHhhhcCCcEEEEEEecC-hHhHHHH-HHHHhCCCEEEEeecC
Q 040308 93 KICSEKNVNVKSEVVIGD-AKEKVCE-LVEKLHADLLVMGSHT 133 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~-~~~~I~~-~a~~~~~dliV~g~~~ 133 (167)
+.+.+.|+++..+..... +.+.+.. ... .+|+||+....
T Consensus 27 ~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 67 (106)
T 2r4q_A 27 EKAKELGVEIKVETNGSSGIKHKLTAQEIE--DAPAIIVAADK 67 (106)
T ss_dssp HHHHHHTCCEEEEEEETTEEESCCCHHHHH--HCSCEEEEESS
T ss_pred HHHHHCCCeEEEEecCCCCccCCCCHHHHH--hCCEEEEEeCC
Confidence 444456766655544432 2222332 344 78999988764
No 401
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=35.50 E-value=73 Score=21.98 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEe-ec
Q 040308 89 DHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMG-SH 132 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g-~~ 132 (167)
+++++...+.|..+... ..|....+-+..+.+.++|.+|+| +.
T Consensus 155 ~~lr~~~~~~~~~~~I~-VdGGI~~~~~~~~~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 155 AELKAWREREGLEYEIE-VDGSCNQATYEKLMAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHTCCCEEE-EESCCSTTTHHHHHHHTCCEEEECTTT
T ss_pred HHHHHHHhccCCCceEE-EECCcCHHHHHHHHHcCCCEEEEccHH
Confidence 33444444445454444 445433333334444589999999 54
No 402
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=35.40 E-value=1.1e+02 Score=21.06 Aligned_cols=68 Identities=7% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+.+.+.+.+.+.|..+......+++.. .+++.....++|-||+....... .. .+.+ ..+||+++-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~-----~~~l---~~iPvV~~~~ 92 (288)
T 2qu7_A 23 TEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKF--QM-----KREW---LKIPIMTLDR 92 (288)
T ss_dssp HHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCC--CC-----CGGG---GGSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCCh--HH-----HHHh---cCCCEEEEec
Confidence 34555666666777877655433344433 35555556789988886543221 11 1222 5688888754
No 403
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=35.28 E-value=48 Score=21.65 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=25.8
Q ss_pred cEEEEeecC-ChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 6 GCVIVAVDG-GEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 6 ~~ILv~id~-s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
.+|||.... +..+...++...+-+... +.++.++.+.+
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~---g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQG---GFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEBCCC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhC---CCEEEEEEhhh
Confidence 466665543 345777788877777766 67888877655
No 404
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=35.18 E-value=69 Score=18.79 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=29.7
Q ss_pred hHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 111 AKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 111 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
-.++.++.+.+..+|+|++...-.. ..+. ...+.+-.. ..+||+++-..
T Consensus 35 ~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 35 DGASGLQQALAHPPDVLISDVNMDG-MDGY---ALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp SHHHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHSTTTTTCCEEEEESC
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCccCCCCEEEEeCC
Confidence 3455566677789999999876432 2211 233444443 35899988654
No 405
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=35.09 E-value=99 Score=20.57 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=25.4
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEee
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGS 131 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~ 131 (167)
..+++.|++++.... +...++...+...+|+++.+.
T Consensus 55 ~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 90 (249)
T 4f3p_A 55 EIAKGAGWTYKIQPM---DFAGLIPALQTQNIDVALSGM 90 (249)
T ss_dssp HHHHHHTCCEEEEEE---CGGGHHHHHHTTSCSEEEEEE
T ss_pred HHHHHcCCceEEEec---CHHHHHHHHHCCCCCEEEecc
Confidence 333445778777654 467888888899999977553
No 406
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=34.99 E-value=1.1e+02 Score=21.11 Aligned_cols=71 Identities=8% Similarity=0.177 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecCh-HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDA-KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~-~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
...+++.+.+.+.+.|..+......++. ....++.....++|-||+....... ...+ .+.. ++||+++-.
T Consensus 26 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~-~~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 26 HGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-------DELG-ALAD-RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-------HHHH-HHHT-TSCEEEESS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-------HHHH-HHHc-CCCEEEEcC
Confidence 3345666667777778776655444432 4455555566789998887543321 1223 3344 899998864
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 97 ~ 97 (289)
T 3k9c_A 97 A 97 (289)
T ss_dssp C
T ss_pred C
Confidence 3
No 407
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=34.98 E-value=34 Score=25.45 Aligned_cols=12 Identities=8% Similarity=0.346 Sum_probs=7.2
Q ss_pred CeEEEEEEeCCC
Q 040308 37 GSFIVLHVQPPP 48 (167)
Q Consensus 37 ~~l~~l~v~~~~ 48 (167)
..+.++|+-+..
T Consensus 19 ~~mrilhiSD~H 30 (386)
T 3av0_A 19 SHMMFVHIADNH 30 (386)
T ss_dssp CCCEEEEECCCC
T ss_pred CCeEEEEEccCC
Confidence 356677776643
No 408
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=34.93 E-value=1.4e+02 Score=22.79 Aligned_cols=28 Identities=4% Similarity=-0.132 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 16 EESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 16 ~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
..+++.+++|+++|+.. +.+|+++|=-+
T Consensus 187 ~~~eRiar~AFe~A~~r---~~kVt~v~KaN 214 (413)
T 1lwd_A 187 ESISGFAHSCFQYAIQK---KWPLYMSTKNT 214 (413)
T ss_dssp HHHHHHHHHHHHHHHHH---TCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHh---CCceEEEECCc
Confidence 67899999999999988 67888887444
No 409
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=34.77 E-value=97 Score=20.94 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=29.9
Q ss_pred hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 113 EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 113 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+.++.+.+..+|.|++....+.....-+--.....+....++||++--
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~G 205 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASG 205 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeC
Confidence 3456667777899998876554333221112345666666788988753
No 410
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=34.76 E-value=77 Score=21.80 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=32.5
Q ss_pred HHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchh
Q 040308 90 HALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVS 146 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~ 146 (167)
++.+.+++.|..+-..+.-+.+.+.+..+.. ..|+|.+.+...+.-.+.|.....
T Consensus 103 ~~i~~i~~~G~k~gval~p~t~~e~l~~~l~--~~D~Vl~msv~pGf~Gq~f~~~~l 157 (228)
T 3ovp_A 103 ALIKDIRENGMKVGLAIKPGTSVEYLAPWAN--QIDMALVMTVEPGFGGQKFMEDMM 157 (228)
T ss_dssp HHHHHHHHTTCEEEEEECTTSCGGGTGGGGG--GCSEEEEESSCTTTCSCCCCGGGH
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHhc--cCCeEEEeeecCCCCCcccCHHHH
Confidence 3444445667766555555667777776666 588887766544444444444443
No 411
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=34.61 E-value=72 Score=23.03 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=4.6
Q ss_pred EEEEeecCC
Q 040308 126 LLVMGSHTF 134 (167)
Q Consensus 126 liV~g~~~~ 134 (167)
.+|.|.+..
T Consensus 79 ~~v~GNHD~ 87 (333)
T 1ii7_A 79 FAIEGNHDR 87 (333)
T ss_dssp EEECCTTTC
T ss_pred EEeCCcCCC
Confidence 445565543
No 412
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=34.51 E-value=1.2e+02 Score=22.69 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred ChhHHHHHHHHHHhcccc------------CCCCCeEEEEEE
Q 040308 15 GEESMDALRWAIDNLKLR------------SPAPGSFIVLHV 44 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~------------~~~~~~l~~l~v 44 (167)
...+++.+++|+++|++. + ..+|+++|=
T Consensus 161 r~~~eRIar~AFe~A~~r~~~~~~~~~~~~~--rkkVt~v~K 200 (366)
T 3ty4_A 161 EEASTKIGKMAFEIAKSRQKIRESGTYSIHK--KPLVTIIHK 200 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCSCS--SCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccccCC--CCeEEEEEC
Confidence 356888999999999765 2 357888874
No 413
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=34.47 E-value=1.1e+02 Score=20.94 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=27.4
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
..++.+...+.++|.|.+.........+...-.....+.+..++||++.
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ 85 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 85 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEe
Confidence 3455666666778877765443222111111235566777777888765
No 414
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=34.41 E-value=1.1e+02 Score=20.93 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++.. ..++.....++|-||+...... . ...+.+.+..++||+++-.
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~-----~~~~~l~~~~~iPvV~~~~ 95 (289)
T 1dbq_A 24 EIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP--E-----PLLAMLEEYRHIPMVVMDW 95 (289)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC--H-----HHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC--H-----HHHHHHHhccCCCEEEEcc
Confidence 3455555556666776655333334433 3455555678998888654321 1 1223232236899988854
No 415
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=34.41 E-value=66 Score=21.95 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecCh--HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDA--KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.++.+.+.+.+.+.|.++......+++ ....++.....++|-||+....... . .. ..+...++||+++-.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~-----~~-~~~~~~~iPvV~~~~ 86 (276)
T 2h0a_A 15 RRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE--R-----FE-EGRLPTERPVVLVDA 86 (276)
T ss_dssp HHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC--------------CCSCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH--H-----HH-HHHhhcCCCEEEEec
Confidence 345666667777778765443222333 2345555556689988886543221 1 11 234456789888854
No 416
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=34.09 E-value=74 Score=18.81 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=29.1
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+.++..++..+|+|++...-.+ ..+. ...+.+-.. ..+||+++-..
T Consensus 38 ~~~al~~~~~~~~dlvilD~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 38 GLDAMKLIEEYNPNVVILDIEMPG-MTGL---EVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHhhcCCCEEEEecCCCC-CCHH---HHHHHHHHHCCCCcEEEEecC
Confidence 445556667778999999876432 2211 234444443 35899888544
No 417
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=34.02 E-value=68 Score=18.37 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=28.8
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
.++.+....+..+|++++...-.+ ..+. ...+.+-.. ..+|++++-..
T Consensus 33 ~~~a~~~~~~~~~dlil~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 33 AKEADYYLNEHIPDIAIVDLGLPD-EDGL---SLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHhcCCCCCEEEEecC
Confidence 455566667778999999865432 2211 234444433 35899888543
No 418
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=33.86 E-value=45 Score=20.66 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
++.+.+.+.+...|++++..-........+. . ++|.||+|+...
T Consensus 17 ~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~---~--~~d~ii~g~pty 60 (148)
T 3f6r_A 17 SIAQKLEELIAAGGHEVTLLNAADASAENLA---D--GYDAVLFGCSAW 60 (148)
T ss_dssp HHHHHHHHHHHTTTCEEEEEETTTBCCTTTT---T--TCSEEEEEECEE
T ss_pred HHHHHHHHHHHhCCCeEEEEehhhCCHhHhc---c--cCCEEEEEeccc
Confidence 3444444455556766554432221111211 1 789999998653
No 419
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=33.63 E-value=1.6e+02 Score=23.13 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=22.0
Q ss_pred EEEecChHhHHHHHHHHhCCCEEEEeecC
Q 040308 105 EVVIGDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 105 ~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+..+.-..++.+.+++.++||+|=++++
T Consensus 420 ~v~~~~D~~~l~~~i~~~~pDLlig~s~~ 448 (523)
T 3u7q_B 420 TVYIGKDLWHLRSLVFTDKPDFMIGNSYG 448 (523)
T ss_dssp EEEESCCHHHHHHHHHHTCCSEEEECTTH
T ss_pred EEEECCCHHHHHHHHHhcCCCEEEECccH
Confidence 35556557788888888899999887654
No 420
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=33.45 E-value=58 Score=22.72 Aligned_cols=41 Identities=10% Similarity=-0.050 Sum_probs=24.0
Q ss_pred CCCCCcEEEEeecCCh---h--------HHHHHHHHHHhccccCCCCCeEEEEEE
Q 040308 1 MSGNLGCVIVAVDGGE---E--------SMDALRWAIDNLKLRSPAPGSFIVLHV 44 (167)
Q Consensus 1 ~~~~~~~ILv~id~s~---~--------s~~al~~a~~la~~~~~~~~~l~~l~v 44 (167)
||+.|++|||.+.... . -..-+-.-...+++. +.+++++..
T Consensus 5 m~~~mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~a---G~~V~~aSp 56 (247)
T 3n7t_A 5 MAPLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAA---GFEVDVASE 56 (247)
T ss_dssp --CCCSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred ccccCCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHC---CCEEEEEeC
Confidence 5555799999987631 1 122333444555555 688888864
No 421
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=33.44 E-value=82 Score=19.10 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=30.5
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
.-.++.++.+++..+|+|++...-.. ..+. ...+.+-... .+||+++-..
T Consensus 53 ~~~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 53 KNGQEAIQLLEKESVDIAILDVEMPV-KTGL---EVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp SSHHHHHHHHTTSCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred CCHHHHHHHhhccCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEeCC
Confidence 33456667777789999999976432 2211 2344444433 4888888654
No 422
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=33.39 E-value=98 Score=20.02 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGKG 164 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~~ 164 (167)
..+...|..+. ...+ ..+.++......+|+|++...-.+ ..++ ...+.+-.. ..+||+++-...
T Consensus 22 ~~L~~~g~~v~---~~~~-~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~~ 86 (208)
T 1yio_A 22 NLLRSAGFEVE---TFDC-ASTFLEHRRPEQHGCLVLDMRMPG-MSGI---ELQEQLTAISDGIPIVFITAHG 86 (208)
T ss_dssp HHHHTTTCEEE---EESS-HHHHHHHCCTTSCEEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEESCT
T ss_pred HHHHhCCceEE---EcCC-HHHHHHhhhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEeCCC
Confidence 33344565432 2233 455556667778999999876432 2211 234445443 358999886543
No 423
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=33.35 E-value=1.2e+02 Score=20.95 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=27.5
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEE
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv 160 (167)
..++.+...+.++|.|.+.............-.....+.+..++||++.
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ 80 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 80 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEE
Confidence 4455566666788888875433221111111234566667777888774
No 424
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=33.31 E-value=79 Score=21.48 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=14.1
Q ss_pred HhHHHHHHHHhCCCEEEEeec
Q 040308 112 KEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~ 132 (167)
.+.+++.+++.++|+||+.-.
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GD 41 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGN 41 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEECCC
Confidence 456666666668888877643
No 425
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=33.23 E-value=83 Score=19.11 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=29.1
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcC-CCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHA-QCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~-~~pVliv~~~ 163 (167)
..+.++..++..+|+||+...-.+ ..+. ...+.+-... .+||+++-..
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 40 AGEAYRLYRETTPDIVVMDLTLPG-PGGI---EATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCeEEEEECC
Confidence 455566677778999999876432 2211 2344444433 4888888644
No 426
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=32.76 E-value=51 Score=21.95 Aligned_cols=51 Identities=8% Similarity=-0.055 Sum_probs=31.3
Q ss_pred cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh--cCCCCEEEEcCC
Q 040308 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN--HAQCPVVVVKGK 163 (167)
Q Consensus 109 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~--~~~~pVliv~~~ 163 (167)
.+..+++...++...+|+|++...-++ ..++ .....+-. ...+||+++-..
T Consensus 40 ~~~~~~~~~~~~~~~~dlvllD~~mp~-~~G~---~~~~~lr~~~~~~~~ii~lt~~ 92 (225)
T 3klo_A 40 FSELWLEENKPESRSIQMLVIDYSRIS-DDVL---TDYSSFKHISCPDAKEVIINCP 92 (225)
T ss_dssp GGGHHHHTTCSGGGGCCEEEEEGGGCC-HHHH---HHHHHHHHHHCTTCEEEEEEEC
T ss_pred CCcHHHHHHHhhccCCCEEEEeCCCCC-CCHH---HHHHHHHHhhCCCCcEEEEECC
Confidence 455666666667789999999876433 1111 23444443 345899888543
No 427
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=32.74 E-value=1e+02 Score=19.90 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=19.0
Q ss_pred hhc-CCcEEEEEEecChHhHHHHHHHH----hCCCEEEEe
Q 040308 96 SEK-NVNVKSEVVIGDAKEKVCELVEK----LHADLLVMG 130 (167)
Q Consensus 96 ~~~-~~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 130 (167)
++. |..+.....-.|-.+.|.+..++ .++|+||..
T Consensus 39 ~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 39 EKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp TTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 344 77665554444434444443332 379988874
No 428
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=32.51 E-value=1.2e+02 Score=20.76 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++. ...++.....++|-||+...... . ...+. +.. .++||+++-.
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~-----~~~~~-l~~~~~iPvV~~~~ 109 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS--V-----DEIDD-IIDAHSQPIMVLNR 109 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC--H-----HHHHH-HHHTCSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC--h-----HHHHH-HHhcCCCCEEEEcc
Confidence 344555555666777654432233443 23445555668998887643221 1 12233 344 6899988854
No 429
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=32.35 E-value=1.6e+02 Score=22.56 Aligned_cols=27 Identities=11% Similarity=-0.060 Sum_probs=22.5
Q ss_pred ChhHHHHHHHHHHhccccCCCCCeEEEEEE
Q 040308 15 GEESMDALRWAIDNLKLRSPAPGSFIVLHV 44 (167)
Q Consensus 15 s~~s~~al~~a~~la~~~~~~~~~l~~l~v 44 (167)
...+++.+++|+++|.+. +.+|+++|=
T Consensus 207 ~~~~eRiar~AFe~A~~r---~kkVt~v~K 233 (427)
T 3us8_A 207 DESITEFARASFNYGLQR---KVPVYLSTK 233 (427)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHc---CCcEEEEEC
Confidence 357899999999999988 778888773
No 430
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=32.34 E-value=35 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=11.0
Q ss_pred HhHHHHHHHHhCCCEEEEeec
Q 040308 112 KEKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~ 132 (167)
.+.|.+..+..++++|++.+.
T Consensus 77 ~~~I~~~~~~~~P~~I~V~tT 97 (511)
T 2xdq_B 77 VDNIIRKDTEEHPDLIVLTPT 97 (511)
T ss_dssp HHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 444555555555655555543
No 431
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=32.22 E-value=46 Score=25.16 Aligned_cols=55 Identities=7% Similarity=-0.006 Sum_probs=36.5
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCCC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGKG 164 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~~ 164 (167)
.-.+.+.+++++.++|-||.-....=.........+-+.+.+..++|+|.+-...
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~ 375 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQ 375 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 4577888899999999999876643322222222233355578899999986543
No 432
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=32.05 E-value=1.2e+02 Score=20.65 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEe-cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVI-GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
..+.+.+.+.+.+.|..+...... ......+++.....++|-||++... . ... +.. ..+||+++-..
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~--~~~--------~~~-~~iPvV~~~~~ 88 (280)
T 3gyb_A 21 IDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQDI-P--DFT--------VPD-SLPPFVIAGTR 88 (280)
T ss_dssp HHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEEEESCC--------------------CCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEEecCCC-C--hhh--------Hhh-cCCCEEEECCC
Confidence 345666667777788776654333 1223456676777899999944322 1 111 111 68999988654
Q ss_pred C
Q 040308 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 89 ~ 89 (280)
T 3gyb_A 89 I 89 (280)
T ss_dssp C
T ss_pred C
Confidence 3
No 433
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=32.04 E-value=1.2e+02 Score=20.62 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC-CCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT-FGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~-~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+++....++..+.|-++...+ -|...+.+.+.+...++|-++.-... .......-.......++++-+..+++++.
T Consensus 21 s~ell~~A~~La~~~g~~v~av~-~G~~~~~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~ 99 (217)
T 3ih5_A 21 SLELLTKGRSLANELNCQLEAVV-AGTGLKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGA 99 (217)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEE-EESCCTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEE-ECCCHHHHHHHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44555556666555566665544 45445666677777789977766432 22222222344555666666667777765
Q ss_pred C
Q 040308 163 K 163 (167)
Q Consensus 163 ~ 163 (167)
.
T Consensus 100 t 100 (217)
T 3ih5_A 100 T 100 (217)
T ss_dssp S
T ss_pred C
Confidence 3
No 434
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=32.00 E-value=85 Score=18.85 Aligned_cols=50 Identities=6% Similarity=0.149 Sum_probs=27.7
Q ss_pred ecChHhHHHHHHHHh-CCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 108 IGDAKEKVCELVEKL-HADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 108 ~g~~~~~I~~~a~~~-~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+. ++.++.+.+. .+|+|++...-.+ ..+. .+.+.+-...++|++++-.
T Consensus 45 ~~~~-~~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 45 AANG-QEALDKLAAQPNVDLILLDIEMPV-MDGM---EFLRHAKLKTRAKICMLSS 95 (145)
T ss_dssp ESSH-HHHHHHHHHCTTCCEEEECTTSCC-CTTC---HHHHHHHHHCCCEEC-CBS
T ss_pred ECCH-HHHHHHHhcCCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCeEEEEE
Confidence 3444 4444555555 8999999865432 2221 2444555455678777754
No 435
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=31.89 E-value=1.1e+02 Score=20.26 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=18.4
Q ss_pred cCCcEEEEEEecChHhHHHHH----HHHhCCCEEEEe
Q 040308 98 KNVNVKSEVVIGDAKEKVCEL----VEKLHADLLVMG 130 (167)
Q Consensus 98 ~~~~~~~~v~~g~~~~~I~~~----a~~~~~dliV~g 130 (167)
.|..+.....-+|-.+.|.+. +++.++|+||..
T Consensus 49 ~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 49 LGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp TCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 677666554444434444433 332379998874
No 436
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=31.87 E-value=66 Score=19.63 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=23.3
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+++++.++|.+++.......- ..-... ..+....+.|.++|.
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~~~---~~~~i~-~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSASQV---QKKVII-ESLAKLHVEVLTIPN 100 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSCHH---HHHHHH-HHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHH---HHHHHH-HHHHHcCCeEEECCC
Confidence 34566666666777776664432210 011122 233455666666664
No 437
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=31.80 E-value=1.5e+02 Score=21.69 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=31.2
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
..+.++.+++..+|+|++...-.. ..++ ...+.+....++||+++-.
T Consensus 38 ~~eAl~~l~~~~pDlVllDi~mp~-~dGl---ell~~l~~~~p~pVIvlS~ 84 (349)
T 1a2o_A 38 PLVARDLIKKFNPDVLTLDVEMPR-MDGL---DFLEKLMRLRPMPVVMVSS 84 (349)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSS-SCHH---HHHHHHHHSSCCCEEEEEC
T ss_pred HHHHHHHHhccCCCEEEEECCCCC-CCHH---HHHHHHHhcCCCcEEEEEC
Confidence 445556667779999999976432 2221 3556676667799998854
No 438
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=31.70 E-value=81 Score=23.39 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecChH
Q 040308 87 IIDHALKICSEKNVNVKSEVVIGDAK 112 (167)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~g~~~ 112 (167)
.++.+.+.+...++. ..+..||..
T Consensus 31 ~l~~l~~~~~~~~~D--~vliaGDl~ 54 (379)
T 3tho_B 31 ALDKVVEEAEKREVD--LILLTGDLL 54 (379)
T ss_dssp HHHHHHHHHHHHTCS--EEEECSCCB
T ss_pred HHHHHHHHHHhcCCC--EEEECCCcc
Confidence 334444444333333 455556544
No 439
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=31.55 E-value=75 Score=18.12 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=33.5
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~ 163 (167)
..+...|..+. ...+..+. +....+..+|++++...-.+ ..+. ...+.+-....+|++++-..
T Consensus 19 ~~l~~~~~~v~---~~~~~~~~-~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (121)
T 1zh2_A 19 TALEGDGMRVF---EAETLQRG-LLEAATRKPDLIILDLGLPD-GDGI---EFIRDLRQWSAVPVIVLSAR 81 (121)
T ss_dssp HHHHTTTCEEE---EESSHHHH-HHHHHHHCCSEEEEESEETT-EEHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHhcCCCEEE---EeCCHHHH-HHHHhcCCCCEEEEeCCCCC-CcHH---HHHHHHHhCCCCcEEEEECC
Confidence 34444455432 23344444 34455668999999865332 1111 23444444456899888543
No 440
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=31.50 E-value=1.4e+02 Score=21.17 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhhcC--CcEEE--EEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE
Q 040308 84 TQAIIDHALKICSEKN--VNVKS--EVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~--~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli 159 (167)
-++++...+..+...+ +.... .+..| .++++...+...+-|||+...- ++..- -.....+....++|+.+
T Consensus 106 k~rl~~~a~~~a~gk~~~~~~k~p~~lk~G--~keV~KaIekgKAkLVVIA~Da-dP~ei---vk~LpaLC~k~gVPy~~ 179 (256)
T 3izc_H 106 KERLTKEAAAVAEGKSKQDASPKPYAVKYG--LNHVVALIENKKAKLVLIANDV-DPIEL---VVFLPALCKKMGVPYAI 179 (256)
T ss_dssp HHHHHHHHHHTCCCCSSCSSCCCSCCEEES--HHHHHHHHHHTCCSEEEEESCC-SSGGG---TTHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCChhhhcc--HHHHHHHHHhCcceEEEEeCCC-ChHHH---HHHHHHHHHhcCCCEEE
Confidence 3445555555544444 22221 13334 6788888899999999999764 33321 12345677777888877
Q ss_pred EcC
Q 040308 160 VKG 162 (167)
Q Consensus 160 v~~ 162 (167)
++.
T Consensus 180 V~s 182 (256)
T 3izc_H 180 VKG 182 (256)
T ss_dssp ESC
T ss_pred ECC
Confidence 764
No 441
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=31.42 E-value=79 Score=18.34 Aligned_cols=48 Identities=6% Similarity=0.064 Sum_probs=28.2
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHh---cCCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCAN---HAQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~---~~~~pVliv~~~ 163 (167)
..+.++...+..+|++++...-.. ..+. ...+.+-. ...+|++++-..
T Consensus 38 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 38 GVDALNKLQAGGYGFVISDWNMPN-MDGL---ELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp HHHHHHHHTTCCCCEEEEESCCSS-SCHH---HHHHHHHC--CCTTCCEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCcEEEEecC
Confidence 445556667778999999876432 2211 23344433 235888888543
No 442
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=30.93 E-value=1.1e+02 Score=20.61 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=24.7
Q ss_pred HhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEe
Q 040308 94 ICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMG 130 (167)
Q Consensus 94 ~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g 130 (167)
.+++.|++++.... +...++...+...+|+++-+
T Consensus 62 i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 62 YCQSRHCKLNITEY---AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp HHHHHTCEEEEEEC---CHHHHHHHHHHTSSSEEEEE
T ss_pred HHHHhCCeEEEEEc---CHHHHHHHHhCCCCCEEEEC
Confidence 33445777776543 57788888889999998766
No 443
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=30.90 E-value=1.4e+02 Score=21.06 Aligned_cols=59 Identities=7% Similarity=0.152 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040308 17 ESMDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICS 96 (167)
Q Consensus 17 ~s~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (167)
.....++.++++|+.. +++.++++..+. .. .+...+...+.++.+.+.+.
T Consensus 105 ~~~~~~~~~i~~A~~l---G~~~v~~~~~~~----------------------~~-----~~~~~~~~~~~l~~l~~~a~ 154 (303)
T 3l23_A 105 KIMEYWKATAADHAKL---GCKYLIQPMMPT----------------------IT-----THDEAKLVCDIFNQASDVIK 154 (303)
T ss_dssp HHHHHHHHHHHHHHHT---TCSEEEECSCCC----------------------CC-----SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCCEEEECCCCC----------------------CC-----CHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999 888776642110 00 01122445566777788888
Q ss_pred hcCCc--EEEE
Q 040308 97 EKNVN--VKSE 105 (167)
Q Consensus 97 ~~~~~--~~~~ 105 (167)
++|+. +-.+
T Consensus 155 ~~Gv~~~l~~E 165 (303)
T 3l23_A 155 AEGIATGFGYH 165 (303)
T ss_dssp HTTCTTCEEEE
T ss_pred HCCCcceEEEc
Confidence 88988 7654
No 444
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=30.85 E-value=84 Score=18.47 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=28.6
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+.++......+|++++...-.+ ..+. .....+-.. ..+|++++-..
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 36 GEEALKKAETEKPDLIVLDVMLPK-LDGI---EVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHHhhcCCCEEEEecCCCC-CCHH---HHHHHHHcCCCCCCEEEEECC
Confidence 344556667778999999876432 2211 234444433 35899888544
No 445
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=30.85 E-value=78 Score=24.26 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=25.6
Q ss_pred HHHHhhhcCCcEEEEEEecChHh---HHHHHHHHhCCCEEEEeecCCCc
Q 040308 91 ALKICSEKNVNVKSEVVIGDAKE---KVCELVEKLHADLLVMGSHTFGP 136 (167)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~g~~~~---~I~~~a~~~~~dliV~g~~~~~~ 136 (167)
+..+....++++.......++.. ..+..+...++|+|++.+.++..
T Consensus 144 L~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 144 LLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 33444455665433211224432 23444555689999999988765
No 446
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=30.60 E-value=98 Score=21.62 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=27.4
Q ss_pred hHHHHHHH--HhCCCEEEEeecCCCccceec-ccchhHHHHhcCCCCEEEEcCC
Q 040308 113 EKVCELVE--KLHADLLVMGSHTFGPIKRMF-LGSVSNYCANHAQCPVVVVKGK 163 (167)
Q Consensus 113 ~~I~~~a~--~~~~dliV~g~~~~~~~~~~~-~gs~~~~i~~~~~~pVliv~~~ 163 (167)
+.|.+..+ ..++|++|+-..+ +....+- .|.....+++...+||++|=..
T Consensus 114 ~~i~~~~~~l~~~~D~vlIEGag-Gl~~pl~~~~~~~adla~~l~~pVILV~~~ 166 (251)
T 3fgn_A 114 DQIVRLIADLDRPGRLTLVEGAG-GLLVELAEPGVTLRDVAVDVAAAALVVVTA 166 (251)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSS-STTCEEETTTEEHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCEEEEECCC-CCcCCcCcccchHHHHHHHcCCCEEEEEcC
Confidence 34555444 2378888886543 2121111 1123445888888888887543
No 447
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=30.43 E-value=1.2e+02 Score=19.91 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=18.1
Q ss_pred hcCCcEEEEEEecChHhHHHHH----HHHhCCCEEEEe
Q 040308 97 EKNVNVKSEVVIGDAKEKVCEL----VEKLHADLLVMG 130 (167)
Q Consensus 97 ~~~~~~~~~v~~g~~~~~I~~~----a~~~~~dliV~g 130 (167)
+.|..+... .-+|-.+.|.+. +++.++|+||..
T Consensus 39 ~~G~~v~~~-iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 39 ITPFEVEYR-VIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp CSCCEEEEE-EECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred hCCCEEEEE-EcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 678777433 334433444433 322379988874
No 448
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=30.37 E-value=66 Score=23.46 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=35.6
Q ss_pred cChHhHHHHHHHHhCCCEEEEeecCCCccce-ecccchhHHHHhc-CCCCEEEE
Q 040308 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKR-MFLGSVSNYCANH-AQCPVVVV 160 (167)
Q Consensus 109 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~i~~~-~~~pVliv 160 (167)
-...++|++.|++.+..+|+-.+.+.....+ .++.......... +++||.+-
T Consensus 27 ~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 80 (307)
T 3n9r_A 27 FEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH 80 (307)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3789999999999999999887664322211 2344455555555 78998774
No 449
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=30.28 E-value=87 Score=18.44 Aligned_cols=48 Identities=8% Similarity=0.037 Sum_probs=28.1
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+.++...+..+|+|++...-.+ ..+. ...+.+-.. ..+|++++-..
T Consensus 36 ~~~al~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 36 AGEGLAKIENEFFNLALFXIKLPD-MEGT---ELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp HHHHHHHHHHSCCSEEEECSBCSS-SBHH---HHHHHHHHHCTTSEEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CchH---HHHHHHHhhCCCCcEEEEecc
Confidence 345556666778999999876432 2211 233444332 35888887543
No 450
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=30.05 E-value=8.4 Score=22.62 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=23.6
Q ss_pred HHHHHHhhh-cCCcEEEEEEecChHhHHHHHHHH-hCCCEEEEeec
Q 040308 89 DHALKICSE-KNVNVKSEVVIGDAKEKVCELVEK-LHADLLVMGSH 132 (167)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~v~~g~~~~~I~~~a~~-~~~dliV~g~~ 132 (167)
+.+.+.+.+ .+. ....+.|+.+..=.. .. -++|++|+...
T Consensus 5 ~~i~~~l~~~~~~--~~v~LFGS~ArG~~~--~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 5 KEIKEITKKDVQD--AEIYLYGSVVEGDYS--IGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHCTT--CEEEEESHHHHCCSS--SCCCSEEEEEECGG
T ss_pred HHHHHHHHHHcCC--cEEEEEEEEEeCCCC--CCCCceEEEEEeCC
Confidence 334444443 343 456788887765322 23 48999998765
No 451
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=29.90 E-value=1.8e+02 Score=22.09 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=18.8
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCeEEEEEE
Q 040308 13 DGGEESMDALRWAIDNLKLRSPAPGSFIVLHV 44 (167)
Q Consensus 13 d~s~~s~~al~~a~~la~~~~~~~~~l~~l~v 44 (167)
.++--+.-+...|..+++.. +.++.++-.
T Consensus 109 ~GvGKTT~a~~LA~~l~~~~---G~kVllvd~ 137 (433)
T 2xxa_A 109 QGAGKTTSVGKLGKFLREKH---KKKVLVVSA 137 (433)
T ss_dssp TTSSHHHHHHHHHHHHHHTS---CCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 34445667788888888775 456666544
No 452
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=29.88 E-value=90 Score=22.96 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=42.4
Q ss_pred HhhhcCCcEEEE-EEecChHhHHHHHHHHhCCCEEEEeecCCCccce-ecccchhHHHHhc-CCCCEEEEc
Q 040308 94 ICSEKNVNVKSE-VVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKR-MFLGSVSNYCANH-AQCPVVVVK 161 (167)
Q Consensus 94 ~~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~i~~~-~~~pVliv~ 161 (167)
.+.+.+.-+-.. +..-...++|++.|++.+..+|+-.+.+.-...+ .++.......... ..+||.+-=
T Consensus 12 ~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHl 82 (323)
T 2isw_A 12 EARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIHL 82 (323)
T ss_dssp HHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 334444333322 3333789999999999999999988765321111 2334556666666 789987753
No 453
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=29.80 E-value=79 Score=23.62 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=38.4
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcCCC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKGKG 164 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~~~ 164 (167)
.-.+.+.+++++.++|-||.-....=... .+-.....+.++..++|+|.+-...
T Consensus 300 ~R~~~i~~~~~~~~~DGvI~~~~~~C~~~-~~~~~~~~~~~~~~giP~l~ie~D~ 353 (385)
T 3o3m_B 300 KRGSLIVDEVKKKDIDGVIFCMMKFCDPE-EYDYPLVRKDIEDSGIPTLYVEIDQ 353 (385)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCcc-HhhHHHHHHHHHHCCCCEEEEEecC
Confidence 45788889999999999998766432222 2334455667788899999986443
No 454
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=29.79 E-value=1.2e+02 Score=19.87 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=28.9
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+.++.+.+..+|+|++...-.+ ..+. .....+-.. ..+||+++-..
T Consensus 35 ~~~a~~~~~~~~~dlvllD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~~ 83 (225)
T 1kgs_A 35 GEEGMYMALNEPFDVVILDIMLPV-HDGW---EILKSMRESGVNTPVLMLTAL 83 (225)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 344456667779999999976432 2211 244445443 35899988543
No 455
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP: b.43.2.1 c.85.1.1
Probab=29.71 E-value=2.2e+02 Score=22.89 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CcEEEEEEe---c--ChHhHHHHHHHHhCCCEEEEeecCCCccceecccc
Q 040308 71 AFTAAIEAHQGRITQAIIDHALKICSEKN-VNVKSEVVI---G--DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGS 144 (167)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~---g--~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs 144 (167)
...+.++++....+++..+.+.+.+...+ .+++++... + ..+....+.-++.++|.+|+-.+..+. ++
T Consensus 21 ~~r~~l~~~~~~~~~~~~~~i~~~L~~~~~~pvevV~~~~~i~~~~~a~~~~e~f~~~~vd~vi~~~~tf~~------~~ 94 (591)
T 1fui_A 21 GVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCY------GS 94 (591)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTEEEEEEEESSCCC------HH
T ss_pred cchhchhHHHHHHHHHHHHHHHHHHhhcCCCCeEEEECCCccCCHHHHHHHHHHhhccCCCEEEEEcCcCCc------hH
Confidence 44556666666666666666767666433 556555423 2 234555666677788999987664332 11
Q ss_pred hhHHHHhcC-CCCEEEEcC
Q 040308 145 VSNYCANHA-QCPVVVVKG 162 (167)
Q Consensus 145 ~~~~i~~~~-~~pVliv~~ 162 (167)
..+... +.|+++...
T Consensus 95 ---e~l~~~~~~Pvli~~~ 110 (591)
T 1fui_A 95 ---ETIDMDPTRPKAIWGF 110 (591)
T ss_dssp ---HHSCCCSSSCEEEEEC
T ss_pred ---HHHHhcCCCCEEEeCC
Confidence 345555 799998743
No 456
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=29.68 E-value=92 Score=18.55 Aligned_cols=64 Identities=6% Similarity=0.204 Sum_probs=35.0
Q ss_pred HHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 92 LKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 92 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
...+...|..+. ...+ .++.++...+..+|+|++...-.+ ..+. ...+.+-.. ..+|++++-..
T Consensus 21 ~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvllD~~l~~-~~g~---~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 21 KQYVKDEPYDIF---HVET-GRDAIQFIERSKPQLIILDLKLPD-MSGE---DVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp HHHTTTSSSEEE---EESS-HHHHHHHHHHHCCSEEEECSBCSS-SBHH---HHHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHhcCceEE---EeCC-HHHHHHHHHhcCCCEEEEecCCCC-CCHH---HHHHHHHhcCCCCCEEEEEec
Confidence 344444555432 2233 455556667778999999876432 1111 234444433 35888887543
No 457
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=29.56 E-value=1.3e+02 Score=20.18 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChH--hHHHHHHHHhCCCEEEEeec
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAK--EKVCELVEKLHADLLVMGSH 132 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~ 132 (167)
.+.+.+.+.+.+.|..+......+++. ..+++.....++|-||+...
T Consensus 19 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 19 LAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 455666666677787665443333443 34566666678998887643
No 458
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=29.54 E-value=1.6e+02 Score=22.12 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=27.8
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEE
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVL 42 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l 42 (167)
++|+++.|.......|...++..+... +.++.++
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~---g~~~~v~ 321 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSA---GVEVYPV 321 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHT---TCEEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhC---CCeEEEE
Confidence 789999999999888888888887766 6666654
No 459
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=29.52 E-value=1.2e+02 Score=20.02 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHH
Q 040308 114 KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCA 150 (167)
Q Consensus 114 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~ 150 (167)
.+.+... .+|.||++++-....-...+-...+++.
T Consensus 80 ~~~~~l~--~AD~iV~~~P~y~~~~pa~lK~~iD~~~ 114 (212)
T 3r6w_A 80 QLVGELF--DSDLLVISTPMYNFSVPSGLKAWIDQIV 114 (212)
T ss_dssp HHHHHHH--HCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHHHHH--hCCEEEEEcCcccccCCHHHHHHHHHHh
Confidence 3344444 8999999987533222222334445553
No 460
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=29.35 E-value=1.6e+02 Score=21.64 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=26.4
Q ss_pred EecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 107 VIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 107 ~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
..|.......+..... +|.||+-+... ...+.+.+++.+||+
T Consensus 85 ~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 126 (328)
T 3grf_A 85 GGKETVQDTAEVFSRM-VDICTARLATK---------EMMREMAQHASVPCI 126 (328)
T ss_dssp ----CHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred CCCCCHHHHHHHHHhh-CCEEEEecCCh---------hHHHHHHHhCCCCEE
Confidence 3455555555555555 89999986643 345678888999976
No 461
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=29.34 E-value=42 Score=26.17 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=18.0
Q ss_pred cChHhHHHHHHH-HhCCCEEEEeecCCCc
Q 040308 109 GDAKEKVCELVE-KLHADLLVMGSHTFGP 136 (167)
Q Consensus 109 g~~~~~I~~~a~-~~~~dliV~g~~~~~~ 136 (167)
|+-.+.+.+.++ +.+..++.+.+.+...
T Consensus 160 GdDl~~v~~~~~~~~~~pVi~v~tpgf~g 188 (492)
T 3u7q_A 160 GDDIESVSKVKGAELSKTIVPVRCEGFRG 188 (492)
T ss_dssp TCCHHHHHHHHHHHHTCCEEEECCCTTSS
T ss_pred hcCHHHHHHHHHHhhCCcEEEecCCCCCC
Confidence 655666666554 4578888777666543
No 462
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=29.33 E-value=58 Score=16.11 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=18.7
Q ss_pred cEEEEEEe-cChHhHHHHHHHHhCCCE
Q 040308 101 NVKSEVVI-GDAKEKVCELVEKLHADL 126 (167)
Q Consensus 101 ~~~~~v~~-g~~~~~I~~~a~~~~~dl 126 (167)
.+..++.. .+..++|+.++++.+.|-
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchh
Confidence 34444444 478999999999888774
No 463
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=29.19 E-value=1.5e+02 Score=20.98 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEEecChHh--HHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 86 AIIDHALKICSEKNVNVKSEVVIGDAKE--KVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+.+.+.+.+.+.|..+......+++.. ..++.....++|-||+....... .....+....++||+++-.
T Consensus 75 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~l~~~~~iPvV~~~~ 146 (340)
T 1qpz_A 75 EIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-------PLLAMLEEYRHIPMVVMDW 146 (340)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCH-------HHHHHHHTTTTSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh-------HHHHHHHhhCCCCEEEEec
Confidence 4555566666677876654333334433 34555556789998885432210 1222222236799888753
No 464
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=29.16 E-value=1.4e+02 Score=20.45 Aligned_cols=35 Identities=11% Similarity=-0.059 Sum_probs=22.5
Q ss_pred CCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 4 NLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 4 ~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
.+.+++++.|+... +.++.++... +..+..+|+-.
T Consensus 11 ~~~~lilAlD~~~~-----~~a~~~v~~~---~~~v~~~Kvg~ 45 (228)
T 3m47_A 11 VMNRLILAMDLMNR-----DDALRVTGEV---REYIDTVKIGY 45 (228)
T ss_dssp CGGGEEEECCCCSH-----HHHHHHHHTT---TTTCSEEEEEH
T ss_pred cCCCeEEEeCCCCH-----HHHHHHHHHc---CCcccEEEEcH
Confidence 36789999999854 3344555555 44566677743
No 465
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=29.16 E-value=16 Score=26.02 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC
Q 040308 80 QGRITQAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.++..+++.+.+.+. ++ .+...+..|+.+..-...-. ++|++|+....
T Consensus 22 Vq~eL~~ive~L~~~---~~-~i~~I~LFGS~ARG~~~~~S--DIDilVv~~~~ 69 (272)
T 4ebj_A 22 VQHTIARWVDRLREE---YA-DAVAILLKGSYARGDAATWS--DIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHHHHHHH---CT-TEEEEEEEHHHHHTCCCTTC--CEEEEEEESST
T ss_pred HHHHHHHHHHHHHHh---cC-CceEEEEEeceeCCCCCCCC--ceEEEEEecCC
Confidence 333444444433333 34 56778899987766554444 99999997654
No 466
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=29.06 E-value=92 Score=22.67 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=27.0
Q ss_pred cChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 109 GDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 109 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
|.......+..... +|.||+-+... ...+.+.+++.+||+
T Consensus 78 gEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 117 (307)
T 3tpf_A 78 GEPVKDTARVIGAM-VDFVMMRVNKH---------ETLLEFARYSKAPVI 117 (307)
T ss_dssp SSCHHHHHHHHHHH-SSEEEEECSCH---------HHHHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHh-CCEEEEecCCh---------HHHHHHHHhCCCCEE
Confidence 44455555555556 89999986542 245677888999986
No 467
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=29.01 E-value=1.3e+02 Score=20.12 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=10.3
Q ss_pred cEEEEeecCChhH
Q 040308 6 GCVIVAVDGGEES 18 (167)
Q Consensus 6 ~~ILv~id~s~~s 18 (167)
.+++++.|+....
T Consensus 4 ~~~ilalD~~~~~ 16 (216)
T 1q6o_A 4 PMLQVALDNQTMD 16 (216)
T ss_dssp CEEEEEECCSSHH
T ss_pred CCeEEEECCCCHH
Confidence 6899999997543
No 468
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=28.91 E-value=1.5e+02 Score=20.62 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHh-hhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEee
Q 040308 84 TQAIIDHALKIC-SEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGS 131 (167)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~ 131 (167)
.+.+.+.+.+.. ++.|+.++.....+...+.+........+|+++++.
T Consensus 17 ~~~~~~~F~~~~~~~~gi~V~v~~~~~~s~~l~~~~~~g~~~Dv~~~~~ 65 (310)
T 1sbp_A 17 YEQYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLAL 65 (310)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESS
T ss_pred HHHHHHHHHHHhhhCCCceEEEEeecCChHHHHHHHhcCCCCCEEEeCc
Confidence 334445555443 235777776544444333333333334799998875
No 469
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=28.65 E-value=1.3e+02 Score=20.01 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhh-c-CCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC
Q 040308 84 TQAIIDHALKICSE-K-NVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 84 ~~~~~~~~~~~~~~-~-~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
..+..+.+.+.+++ . ||+++..... ...........++|+.+.|...
T Consensus 111 ~~~~a~~i~~~l~~~i~GI~v~i~~~~---~~~~~~~~~~g~~d~~~~~w~~ 159 (229)
T 3o6p_A 111 SKKTVEFVQGSIQDALDGVKVTVSPVP---FSVRLDRSNKGDFDAVIGGWSA 159 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTEEEEEEEEC---HHHHHHHHHHTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEecC---HHHHHHHhhcCCceEEEecccC
Confidence 34556667777888 7 9888776554 3344445567799999988654
No 470
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=28.26 E-value=1.6e+02 Score=20.80 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccccCCCCCeEEEEEEeCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040308 19 MDALRWAIDNLKLRSPAPGSFIVLHVQPPPTIAAGLNPGAIPFGGPSHVEVPAFTAAIEAHQGRITQAIIDHALKICSEK 98 (167)
Q Consensus 19 ~~al~~a~~la~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (167)
...++.++++|+.. +++.+++|......... .. ....+...+...+.++++.+.+.+.
T Consensus 113 ~~~~~~~i~~A~~l---Ga~~v~~~~g~~~~~~~----------------~~---~~~~~~~~~~~~~~l~~l~~~a~~~ 170 (316)
T 3qxb_A 113 YQHLKRAIDMTAAM---EVPATGMPFGSYSAADA----------------LN---PARREEIYAIARDMWIELAAYAKRQ 170 (316)
T ss_dssp HHHHHHHHHHHHHT---TCCEEEECCBBCCHHHH----------------TC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCEEEecCCCcCcccc----------------CC---cccHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688899999999 88887654332100000 00 0111223344556667777777888
Q ss_pred CCc-EEEEE--Ee---cChHhHHHHHHHHh
Q 040308 99 NVN-VKSEV--VI---GDAKEKVCELVEKL 122 (167)
Q Consensus 99 ~~~-~~~~v--~~---g~~~~~I~~~a~~~ 122 (167)
|+. +-.+. .. +...+++.++++..
T Consensus 171 Gv~~l~lE~~~~~~~~~~t~~~~~~l~~~v 200 (316)
T 3qxb_A 171 GLSMLYVEPVPLATEFPSSAADAARLMADL 200 (316)
T ss_dssp TCCEEEECCCSCTTBSSCSHHHHHHHHHHH
T ss_pred CCeEEEEEecCCccccCCCHHHHHHHHHHH
Confidence 887 65443 21 23355566666654
No 471
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=28.24 E-value=1.4e+02 Score=20.28 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecC
Q 040308 85 QAIIDHALKICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHT 133 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 133 (167)
.+..+.+.+.+++.|++++..... ...........++|+.+.|...
T Consensus 142 ~~~a~~iq~~l~~iGi~v~i~~~~---~~~~~~~~~~~~~d~~~~~w~~ 187 (258)
T 3lvu_A 142 QTVLEIYTRALERLGIAAQIEKVD---NAQYTARVAELDFDLTPFRRDL 187 (258)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEC---HHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeeEEEecC---HHHHHHHhccCCccEEEecCCC
Confidence 344555666777789888877654 2334444567799999998653
No 472
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=28.05 E-value=1.9e+02 Score=21.76 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEEe---cChHhHHHHHHHHhCCCEEEEeecCCC
Q 040308 84 TQAIIDHALKICSEKNVNVKSEVVI---GDAKEKVCELVEKLHADLLVMGSHTFG 135 (167)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~---g~~~~~I~~~a~~~~~dliV~g~~~~~ 135 (167)
.+++.+.+.+.+.+.|++....-.. .....+|+..+. ++|-||+|+....
T Consensus 279 Te~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~--~~~~ivlGspT~~ 331 (410)
T 4dik_A 279 VENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIP--DSEALIFGVSTYE 331 (410)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHST--TCSEEEEEECCTT
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHH--hCCeEEEEeCCcC
Confidence 4566666777777778765543222 223455666555 8999999988643
No 473
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=27.99 E-value=95 Score=20.42 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEee
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGS 131 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~ 131 (167)
..+++.|++++.... +...++...+...+|+++.+.
T Consensus 36 ~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 71 (237)
T 3kzg_A 36 EICRRLHATCTFEAY---IFDDLFPALKNREVDLVIASM 71 (237)
T ss_dssp HHHHHTTCEEEEEEE---CGGGHHHHHHTTSSSEECSSC
T ss_pred HHHHHhCCceEEEEc---CHHHHHHHHhCCCCCEEEEcc
Confidence 444556888877654 468888888999999877543
No 474
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=27.90 E-value=93 Score=18.03 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=28.9
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+.++...+..+|++++...-.+ ..+. ...+.+-.. ..+||+++-..
T Consensus 36 ~~~~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 36 AEAFLAFAPDVRNGVLVTDLRMPD-MSGV---ELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp HHHHHHHGGGCCSEEEEEECCSTT-SCHH---HHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHHhcCCCCEEEEECCCCC-CCHH---HHHHHHHhcCCCCCEEEEECC
Confidence 455666677778999999875432 2211 233444333 35899988654
No 475
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=27.86 E-value=84 Score=23.47 Aligned_cols=70 Identities=21% Similarity=0.179 Sum_probs=43.6
Q ss_pred hhhcCCcEEEE-EEecChHhHHHHHHHHhCCCEEEEeecCCC------ccce------ec-----ccchhHHHHhcCCCC
Q 040308 95 CSEKNVNVKSE-VVIGDAKEKVCELVEKLHADLLVMGSHTFG------PIKR------MF-----LGSVSNYCANHAQCP 156 (167)
Q Consensus 95 ~~~~~~~~~~~-v~~g~~~~~I~~~a~~~~~dliV~g~~~~~------~~~~------~~-----~gs~~~~i~~~~~~p 156 (167)
+.+.+.-+-.. +..-...++|++.|++.+..+|+-.+.+.. .+.. .+ +...+..+..+.++|
T Consensus 24 A~~~~yAVpAfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A~~~~VP 103 (358)
T 1dos_A 24 AKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVP 103 (358)
T ss_dssp HHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHHHHCCCC
Confidence 34444333333 333478999999999999999998776421 1111 11 244556677788999
Q ss_pred EEEEcCCC
Q 040308 157 VVVVKGKG 164 (167)
Q Consensus 157 Vliv~~~~ 164 (167)
|.+-=...
T Consensus 104 VaLHlDHg 111 (358)
T 1dos_A 104 VILHTDHC 111 (358)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 98765443
No 476
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=27.76 E-value=29 Score=19.65 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=25.7
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEcC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVKG 162 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~~ 162 (167)
.+++.+..+...+-|+|+...-.... -.....+....++|+..++.
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~~~-----~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADPIL-----TSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCHHH-----HHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCHHH-----HHHHHHHHHHcCCCEEEECC
Confidence 34566666666777777765532211 12334555666677777663
No 477
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=27.71 E-value=1.9e+02 Score=21.44 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=28.1
Q ss_pred EecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEE
Q 040308 107 VIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVV 159 (167)
Q Consensus 107 ~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVli 159 (167)
..|.......+..... +|.||+-.... ...+.+.+++++||+=
T Consensus 110 ~kgEsl~DTarvLs~y-~D~IviR~~~~---------~~~~~lA~~~~vPVIN 152 (340)
T 4ep1_A 110 GRGETVSDTAKVLSHY-IDGIMIRTFSH---------ADVEELAKESSIPVIN 152 (340)
T ss_dssp ---CCTTHHHHHHHHH-CSEEEEECSCH---------HHHHHHHHHCSSCEEE
T ss_pred CCCCCHHHHHHHHHHh-CCEEEEecCCh---------hHHHHHHHhCCCCEEe
Confidence 3465555566666666 99999986532 3456788899999863
No 478
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=27.69 E-value=77 Score=23.10 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=37.5
Q ss_pred EecChHhHHHHHHHHhCCCEEEEeecCCCccce-ecccchhHHHHhcCCCCEEEE
Q 040308 107 VIGDAKEKVCELVEKLHADLLVMGSHTFGPIKR-MFLGSVSNYCANHAQCPVVVV 160 (167)
Q Consensus 107 ~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~i~~~~~~pVliv 160 (167)
..-...++|++.|++.+..+|+-.+.+...+.+ ..+......... .++||.+-
T Consensus 25 ~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPValH 78 (305)
T 1rvg_A 25 NNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAVH 78 (305)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 334789999999999999999988765322211 234456666777 88998775
No 479
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=27.64 E-value=1.3e+02 Score=19.69 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=20.8
Q ss_pred hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHH
Q 040308 113 EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCA 150 (167)
Q Consensus 113 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~ 150 (167)
+.+.+... .+|.||++++-....-...+-...+++.
T Consensus 59 ~~~~~~i~--~AD~iV~~sP~y~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 59 AHAREEVQ--EADAIWIFSPVYNYAIPGPVKNLLDWLS 94 (192)
T ss_dssp HHHHHHHH--HCSEEEEECCCBTTBCCHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCEEEEECcccccCCCHHHHHHHHHhh
Confidence 45556666 9999999987543322222333444444
No 480
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=27.59 E-value=1.1e+02 Score=22.19 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=25.7
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEE
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVV 158 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVl 158 (167)
.......+..... +|.||+-+...+ ..+.+.+++.+||+
T Consensus 88 Esl~DTarvls~~-~D~iviR~~~~~---------~~~~la~~~~vPVI 126 (308)
T 1ml4_A 88 ESLRDTIKTVEQY-CDVIVIRHPKEG---------AARLAAEVAEVPVI 126 (308)
T ss_dssp CCHHHHHHHHTTT-CSEEEEEESSTT---------HHHHHHHTCSSCEE
T ss_pred CCHHHHHHHHHHh-CcEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 3444444444454 899999876543 34567788999986
No 481
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=27.49 E-value=83 Score=22.34 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.4
Q ss_pred ChHhHHHHHHHHhCCCEEEEeecCCC
Q 040308 110 DAKEKVCELVEKLHADLLVMGSHTFG 135 (167)
Q Consensus 110 ~~~~~I~~~a~~~~~dliV~g~~~~~ 135 (167)
-|.++|++.+.+.++|+|.+...-..
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~t~ 192 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTVTQ 192 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCCCT
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecCC
Confidence 48999999999999999999876543
No 482
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=27.40 E-value=1.4e+02 Score=20.26 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=29.2
Q ss_pred hHHHHHHHHhCCCEEEEeecCCCcc-ceecccchhHHHHhcCCCCEEEEc
Q 040308 113 EKVCELVEKLHADLLVMGSHTFGPI-KRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 113 ~~I~~~a~~~~~dliV~g~~~~~~~-~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+..+.+.+..+|.|++-...+... ... --....++....++||+.--
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~ipvia~G 200 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGGP-NLDLLAGVADRTDAPVIASG 200 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSCC-CHHHHHHHHTTCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCC-CHHHHHHHHHhCCCCEEEEC
Confidence 4555666677899887665544322 222 22355677777789987653
No 483
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=27.32 E-value=1.3e+02 Score=19.65 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=23.5
Q ss_pred HHHHHHhhhcCCcEEEEEEecChHhHHHH----HHHHhCCCEEEEe
Q 040308 89 DHALKICSEKNVNVKSEVVIGDAKEKVCE----LVEKLHADLLVMG 130 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~----~a~~~~~dliV~g 130 (167)
..+.+.+++.|.++.....-.|-.+.|.+ .+++.++|+||..
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 34456666778776655444443444443 3332248998874
No 484
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=27.20 E-value=89 Score=18.33 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=25.8
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCCEEEEc
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCPVVVVK 161 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~pVliv~ 161 (167)
.+++.+..+...+-+||+.......... .........++|+..++
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~~~~~~-----~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDASSNTAK-----KVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHHHHH-----HHHHHHHHTTCCEEEES
T ss_pred hhhhHHHHhcCceeEEEEeccccccchh-----hhcccccccCCCeeeec
Confidence 4556666677777777777654332211 22344555667777664
No 485
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.00 E-value=56 Score=21.48 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=29.4
Q ss_pred cEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEEeC
Q 040308 6 GCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHVQP 46 (167)
Q Consensus 6 ~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v~~ 46 (167)
+.+++.+..|..+...++ +++.|+.. +++++.+.-.+
T Consensus 114 ~DvvI~iS~SG~t~~~i~-~~~~ak~~---g~~vI~IT~~~ 150 (199)
T 1x92_A 114 GDVLLAISTSGNSANVIQ-AIQAAHDR---EMLVVALTGRD 150 (199)
T ss_dssp TCEEEEECSSSCCHHHHH-HHHHHHHT---TCEEEEEECTT
T ss_pred CCEEEEEeCCCCCHHHHH-HHHHHHHC---CCEEEEEECCC
Confidence 578999999999888876 55788888 88888776543
No 486
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=26.98 E-value=2.3e+02 Score=22.34 Aligned_cols=74 Identities=9% Similarity=-0.060 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEE-----ecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhcCCCC
Q 040308 82 RITQAIIDHALKICSEKNVNVKSEVV-----IGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANHAQCP 156 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~-----~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~~~~p 156 (167)
...-..++.+.+.+++.|.++...-. .|++.+.|.+.+++.+++-|++-....-. .+.-++..+|+
T Consensus 63 ~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~e~r---------~~~~l~~~gi~ 133 (522)
T 3zxs_A 63 ALILAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPGDWR---------LIEALEAMPLP 133 (522)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCSCHH---------HHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcchHH---------HHHHHHHcCCc
Confidence 44566677788888888988866431 37899999999999999999887322111 12333344889
Q ss_pred EEEEcCCC
Q 040308 157 VVVVKGKG 164 (167)
Q Consensus 157 Vliv~~~~ 164 (167)
|-+++...
T Consensus 134 v~~~~~~~ 141 (522)
T 3zxs_A 134 VRFLPDDR 141 (522)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 98888653
No 487
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=26.94 E-value=1.9e+02 Score=21.35 Aligned_cols=39 Identities=8% Similarity=-0.074 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCChhHHHHHHHHHHhccccCCCCCeEEEEEE
Q 040308 3 GNLGCVIVAVDGGEESMDALRWAIDNLKLRSPAPGSFIVLHV 44 (167)
Q Consensus 3 ~~~~~ILv~id~s~~s~~al~~a~~la~~~~~~~~~l~~l~v 44 (167)
+.|++|++.+...+...........+.+.. +.++.+++.
T Consensus 23 ~~m~ki~~v~Gtr~~~~~~a~li~~l~~~~---~~~~~~~~t 61 (396)
T 3dzc_A 23 NAMKKVLIVFGTRPEAIKMAPLVQQLCQDN---RFVAKVCVT 61 (396)
T ss_dssp -CCEEEEEEECSHHHHHHHHHHHHHHHHCT---TEEEEEEEC
T ss_pred CCCCeEEEEEeccHhHHHHHHHHHHHHhCC---CCcEEEEEe
Confidence 345789998877776655544444444433 456666655
No 488
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=26.91 E-value=1.6e+02 Score=22.32 Aligned_cols=27 Identities=4% Similarity=-0.182 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHhccccCCCCCeEEEEEEe
Q 040308 16 EESMDALRWAIDNLKLRSPAPGSFIVLHVQ 45 (167)
Q Consensus 16 ~~s~~al~~a~~la~~~~~~~~~l~~l~v~ 45 (167)
..+++.+++|+++|... +.+|+++|=-
T Consensus 185 ~~~eRiar~AF~~A~~~---~~~vt~v~Ka 211 (402)
T 4aoy_A 185 KSIRSFARACFNYALDM---NQDLWFSTKD 211 (402)
T ss_dssp HHHHHHHHHHHHHHHHH---TCCEEEEECT
T ss_pred HHHHHHHHHHHHHHHHc---CCcEEEEECC
Confidence 67889999999999988 7788888743
No 489
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=26.85 E-value=1.7e+02 Score=20.70 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=26.5
Q ss_pred CcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccce
Q 040308 100 VNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKR 139 (167)
Q Consensus 100 ~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~ 139 (167)
+.............+++.++++.++.++..+.-+.+.+..
T Consensus 167 ~~~q~~~~~~~~~~~l~~~~~~~gi~~~a~spl~~G~l~~ 206 (290)
T 4gie_A 167 MVNQVELHPLFQQRTLREFCKQHNIAITAWSPLGSGEEAG 206 (290)
T ss_dssp SEEEEECBTTBCCHHHHHHHHHTTCEEEEESTTCSSGGGC
T ss_pred ceeeEeccccchhHHHHHHHHHcCceEeeecccccccccc
Confidence 3333333334567889999999888888877666555443
No 490
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=26.71 E-value=1.5e+02 Score=19.98 Aligned_cols=63 Identities=8% Similarity=0.136 Sum_probs=35.3
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+...|..+. ...+ .++.++.+.+..+|+|++...-.+ ..++ .....+-.. ..+||+++-..
T Consensus 41 ~~L~~~g~~v~---~~~~-~~~al~~~~~~~~dlvllD~~lp~-~~g~---~~~~~lr~~~~~~~ii~lt~~ 104 (250)
T 3r0j_A 41 VSLKFQGFEVY---TATN-GAQALDRARETRPDAVILDVXMPG-MDGF---GVLRRLRADGIDAPALFLTAR 104 (250)
T ss_dssp HHHHHTTCEEE---EESS-HHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEECS
T ss_pred HHHHHCCCEEE---EECC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEECC
Confidence 33344565432 2233 445556667779999999976432 2211 234444443 35899988654
No 491
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=26.45 E-value=1.1e+02 Score=18.19 Aligned_cols=48 Identities=8% Similarity=0.202 Sum_probs=27.6
Q ss_pred HhHHHHHHHH------hCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 112 KEKVCELVEK------LHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~------~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
.++.++..++ ..+|+|++...-.+ ..+. ...+.+-.. ..+|++++-..
T Consensus 42 ~~~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 42 GNQALDMLYGRNKENKIHPKLILLDINIPK-MNGI---EFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp HHHHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHH---HHHHHHTTSGGGTTCEEEEEESC
T ss_pred HHHHHHHHHhcccccCCCCCEEEEecCCCC-CCHH---HHHHHHHcCccccCCcEEEEeCC
Confidence 3444555554 68999999975432 2211 234444433 45888887543
No 492
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=26.41 E-value=28 Score=27.03 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=15.5
Q ss_pred cChHhHHHHHHH-HhCCCEEEEeecCC
Q 040308 109 GDAKEKVCELVE-KLHADLLVMGSHTF 134 (167)
Q Consensus 109 g~~~~~I~~~a~-~~~~dliV~g~~~~ 134 (167)
|+-.+.+.+.++ +.+..+|.+-+.+.
T Consensus 138 GdDl~~v~~~~~~~~~~pVi~v~tpgf 164 (483)
T 3pdi_A 138 GDDVDAVCKAAAERFGTPVIPVDSAGF 164 (483)
T ss_dssp TCCHHHHHHHHHHHHCSCEEEECCCGG
T ss_pred cCCHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 655666665554 45777666665543
No 493
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=26.37 E-value=68 Score=21.58 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHhhhcCCcEEEEEEe----------cChHhHHHHHHHHhCCCEEEEe
Q 040308 93 KICSEKNVNVKSEVVI----------GDAKEKVCELVEKLHADLLVMG 130 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~----------g~~~~~I~~~a~~~~~dliV~g 130 (167)
..++..|++++..... ......++...+...+|+++-+
T Consensus 42 ~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~ 89 (259)
T 3g3k_A 42 ELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89 (259)
T ss_dssp HHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSS
T ss_pred HHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEee
Confidence 3444558888776543 2367888889999999998743
No 494
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=26.35 E-value=1.4e+02 Score=19.57 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhcCCcEEEEE-EecC------hHhHHHHHHHHhCCCEEEE
Q 040308 86 AIIDHALKICSEKNVNVKSEV-VIGD------AKEKVCELVEKLHADLLVM 129 (167)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~v-~~g~------~~~~I~~~a~~~~~dliV~ 129 (167)
.+...+.+.++..|.++++.. +.++ ...+-.+.+++.++|+.|=
T Consensus 33 ~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfIS 83 (180)
T 3qay_A 33 SLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIE 83 (180)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEE
Confidence 344555566666787764443 3332 2566777889999998875
No 495
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=26.20 E-value=1.1e+02 Score=24.09 Aligned_cols=25 Identities=4% Similarity=0.150 Sum_probs=14.4
Q ss_pred cChHhHHHHHHHHhCCCEEEEeecCC
Q 040308 109 GDAKEKVCELVEKLHADLLVMGSHTF 134 (167)
Q Consensus 109 g~~~~~I~~~a~~~~~dliV~g~~~~ 134 (167)
|+-.+.+.+.++. ++.+|.+.+.+.
T Consensus 101 GdDi~~v~~~~~~-~~pVi~v~tpgf 125 (525)
T 3aek_B 101 QDDPNGISRALNL-PVPVVPLELPSY 125 (525)
T ss_dssp CCCHHHHHHHHTC-SSCEEECCCCTT
T ss_pred cccHHHHHHHhcC-CCCEEEEECCCc
Confidence 5555566666654 566666655543
No 496
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=26.16 E-value=1.4e+02 Score=19.59 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.2
Q ss_pred CCCEEEEeecCC
Q 040308 123 HADLLVMGSHTF 134 (167)
Q Consensus 123 ~~dliV~g~~~~ 134 (167)
.+|.||++++-.
T Consensus 94 ~aD~iv~~~P~y 105 (208)
T 2hpv_A 94 SADKVVIANPMW 105 (208)
T ss_dssp HCSEEEEEEECB
T ss_pred hCCEEEEEeccc
Confidence 899999998753
No 497
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=26.11 E-value=1.1e+02 Score=18.29 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=28.8
Q ss_pred HhHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc-CCCCEEEEcCC
Q 040308 112 KEKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH-AQCPVVVVKGK 163 (167)
Q Consensus 112 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~-~~~pVliv~~~ 163 (167)
..+.++.+.+..+|+|++...-.+ ..+. .+.+.+-.. ..+|++++-..
T Consensus 38 ~~~al~~~~~~~~dlvllD~~lp~-~~g~---~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 38 GINAIQIALKHPPNVLLTDVRMPR-MDGI---ELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp HHHHHHHHTTSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEECCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCcEEEEeCC
Confidence 455556667778999999876432 2221 234444433 35888888543
No 498
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=26.06 E-value=45 Score=27.80 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=31.5
Q ss_pred hHHHHHHHHhCCCEEEEeecCCCccceecccchhHHHHhc---CCCCEEEEcCC
Q 040308 113 EKVCELVEKLHADLLVMGSHTFGPIKRMFLGSVSNYCANH---AQCPVVVVKGK 163 (167)
Q Consensus 113 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~i~~~---~~~pVliv~~~ 163 (167)
+.+.++++++++++|++|....+.-...| ...++.. .++|++++...
T Consensus 373 ~~l~~li~~~~~~~IaIGngtasret~~~----v~~l~~~~~~~~i~~v~v~e~ 422 (785)
T 3bzc_A 373 AVLAALCAKHQVELIAIGNGTASRETDKL----AGELIKKYPGMKLTKIMVSEA 422 (785)
T ss_dssp HHHHHHHHHHTCCEEEEESSTTHHHHHHH----HHHHHHHCGGGCCEEEEECCH
T ss_pred HHHHHHHHHcCCCEEEECCCccCHHHHHH----HHHHHHhcccCCCCEEEEcCC
Confidence 56889999999999999985444332223 3344433 35888888753
No 499
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=25.97 E-value=57 Score=21.52 Aligned_cols=36 Identities=6% Similarity=0.025 Sum_probs=25.7
Q ss_pred HHhhhcCCcEEEEEEecChHhHHHHHHHHhCCCEEEEee
Q 040308 93 KICSEKNVNVKSEVVIGDAKEKVCELVEKLHADLLVMGS 131 (167)
Q Consensus 93 ~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~ 131 (167)
..++..|++++.... +...++...+...+|+++.+.
T Consensus 47 ~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 82 (239)
T 3kbr_A 47 RLAESLGAKLVVVPT---SWPNLMRDFADDRFDIAMSGI 82 (239)
T ss_dssp HHHHHTTCEEEEEEC---CTTTHHHHHHTTCCSEECSSC
T ss_pred HHHHHHCCceEEEEe---CHHHHHHHHHCCCcCEEEeCC
Confidence 344456888777543 677788888889999987553
No 500
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=25.97 E-value=1.5e+02 Score=19.85 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=14.5
Q ss_pred CcEEEEeecCChhHHHHHHHHHH
Q 040308 5 LGCVIVAVDGGEESMDALRWAID 27 (167)
Q Consensus 5 ~~~ILv~id~s~~s~~al~~a~~ 27 (167)
..++.++.|+..... +++.+-.
T Consensus 6 ~~~lilalD~~~~~~-~~~~~~~ 27 (218)
T 3jr2_A 6 KPMIQIALDQTNLTD-AVAVASN 27 (218)
T ss_dssp CCEEEEEECCSSHHH-HHHHHHH
T ss_pred CCCeEEEeCCCCHHH-HHHHHHH
Confidence 578999999975433 4444444
Done!