BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040309
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 75/99 (75%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
+LH+WNDE+S+K+LK KEAI K + GKVIIID++I+ S D+ E QL +D++M+++
Sbjct: 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 319
Query: 62 FRGKERSVDDWKKLFLAAGFSHYKITPILGVRSLIEAYP 100
F GKER+ +W+KL AGFS YKITPI G +SLIE YP
Sbjct: 320 FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 75/99 (75%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
+LH+WNDE+S+K+LK KEAI K + GKVIIID++I+ S D+ E QL +D++M+++
Sbjct: 259 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 318
Query: 62 FRGKERSVDDWKKLFLAAGFSHYKITPILGVRSLIEAYP 100
F GKER+ +W+KL AGFS YKITPI G +SLIE YP
Sbjct: 319 FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 357
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 75/99 (75%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
+LH+WNDE+S+K+LK KEAI K + GKVIIID++I+ S D+ E QL +D++M+++
Sbjct: 256 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM 315
Query: 62 FRGKERSVDDWKKLFLAAGFSHYKITPILGVRSLIEAYP 100
F GKER+ +W+KL AGFS YKITPI G +SLIE YP
Sbjct: 316 FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 354
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
ILHNW D++ +++LKKCKEA+ + + GKV IIDM I+ + + + + +L D+ M L
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL 314
Query: 62 FRGKERSVDDWKKLFLAAGFSHYKITPILGVRSLIEAYP 100
GKER+ ++WKKLF+ AGF HYKI+P+ G SLIE YP
Sbjct: 315 -NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 101 bits (252), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 60
+LH+W D++ +K+LKKCKEA+ S + GKVI+IDM I + + + + +L ++ +S
Sbjct: 259 AVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNV-TIS 317
Query: 61 LFRGKERSVDDWKKLFLAAGFSHYKITPILGVRSLIEAYP 100
GKER+ ++WKKLF+ AGF YKI+P G+ SLIE YP
Sbjct: 318 CVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIYP 357
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
ILHNW D++ +++LKKCKEA+ + + GKV IID I+ + + + + +L D+ L
Sbjct: 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACL 314
Query: 62 FRGKERSVDDWKKLFLAAGFSHYKITPILGVRSLIEAYP 100
GKER+ ++WKKLF+ AGF HYKI+P+ G SLIE YP
Sbjct: 315 -NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
ILHNW DE+SV++L C+ P+ G+V++ID + + +S E D ++
Sbjct: 256 ILHNWGDEDSVRILTNCRRVXPAH---GRVLVIDAVVPEGNDAHQSKEX----DFXXLAA 308
Query: 62 FRGKERSVDDWKKLFLAAGFSHYKITPILGVRSLIEAYP 100
G+ER+ + + LF AAG ++ V S+ P
Sbjct: 309 RTGQERTAAELEPLFTAAGLRLDRVVGTSSVXSIAVGVP 347
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 60
+ HNW+DE+ ++ L C +A+ GKVII++ + + E + D LM
Sbjct: 275 AVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI 331
Query: 61 LFRGKERSVDDWKKLFLAAGFSHYKI 86
G+ER+ ++KL +GFS +++
Sbjct: 332 TVGGRERTEKQYEKLSKLSGFSKFQV 357
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
I H+W+DE +KLLK C A+P + GKVI+ + + + + + D LM++
Sbjct: 270 ICHDWSDEHCLKLLKNCYAALP---DHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAY 326
Query: 62 FR-GKERSVDDWKKLFLAAGFSHYKI 86
GKER+ +++ L +A+GF +K+
Sbjct: 327 NPGGKERTEKEFQALAMASGFRGFKV 352
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
I H+W+DE +K LK C EA+P + GKVI+ + + + + + D++M++
Sbjct: 267 ICHDWSDEHCLKFLKNCYEALP---DNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAH 323
Query: 62 FR-GKERSVDDWKKLFLAAGFSHYKI 86
GKER+ +++ L AGF +K+
Sbjct: 324 NPGGKERTQKEFEDLAKGAGFQGFKV 349
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 60
+ HNW+DE+ ++ L C +A+ GKVII++ + + E + D L
Sbjct: 275 AVCHNWSDEKCIEFLSNCHKALSPN---GKVIIVEFILPEEPNTSEESKLVSTLDNLXFI 331
Query: 61 LFRGKERSVDDWKKLFLAAGFSHYKI 86
G+ER+ ++KL +GFS +++
Sbjct: 332 TVGGRERTEKQYEKLSKLSGFSKFQV 357
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 60
+LH+W+D +V +L++C EA S GG V++I+ A+ M D+ M++
Sbjct: 243 AVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIE-AVAGDEHAGTGM------DLRMLT 292
Query: 61 LFRGKERSVDDWKKLFLAAGFSHYKITPILGVRSLIE 97
F GKERS+ + +L AG + PI V S++E
Sbjct: 293 YFGGKERSLAELGELAAQAGLAVRAAHPISYV-SIVE 328
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 61
ILH+W+D+ LLK C +A+P+ GKV+++ + + S + D++M++
Sbjct: 268 ILHDWSDQHCATLLKNCYDALPAH---GKVVLVQCILPVNPEANPSSQGVFHVDMIMLAH 324
Query: 62 FR-GKERSVDDWKKLFLAAGFSHYKITPI 89
G+ER +++ L AGF+ K T I
Sbjct: 325 NPGGRERYEREFQALARGAGFTGVKSTYI 353
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA-IENQSQDKESMETQLCFDILMVS 60
+L NW+DE+++ +L+ C A+ + GG+++++D A +E D+ T L D+ M++
Sbjct: 257 VLLNWSDEDALTILRGCVRAL---EPGGRLLVLDRADVEGDGADR-FFSTLL--DLRMLT 310
Query: 61 LFRGKERSVDDWKKLFLAAGFS 82
G+ R+ D+ L +AG +
Sbjct: 311 FMGGRVRTRDEVVDLAGSAGLA 332
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLC-FDILMVS 60
+L NW D ++V++L +C EA+ + GG+++I E + S Q D+ M+
Sbjct: 258 VLLNWPDHDAVRILTRCAEAL---EPGGRILI----HERDDLHENSFNEQFTELDLRMLV 310
Query: 61 LFRGKERSVDDWKKLFLAAGF 81
G R+ + W L +AG
Sbjct: 311 FLGGALRTREKWDGLAASAGL 331
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA-IENQSQDKESMETQLCFDILMVS 60
+L NW+DE+++ +L+ C A+ + GG+++++D A +E D+ T L D+ ++
Sbjct: 257 VLLNWSDEDALTILRGCVRAL---EPGGRLLVLDRADVEGDGADR-FFSTLL--DLRXLT 310
Query: 61 LFRGKERSVDDWKKLFLAAGFS 82
G+ R+ D+ L +AG +
Sbjct: 311 FXGGRVRTRDEVVDLAGSAGLA 332
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 60
G+ N + +VK+L +IP E G + +D+ N F +L+V
Sbjct: 498 GLRKETNSKATVKMLPSFVRSIPDGTEHGDFLALDLGGTN-------------FRVLLVK 544
Query: 61 LFRGKERSVDDWKKLF 76
+ GK+R+V+ K++
Sbjct: 545 IRSGKKRTVEMHNKIY 560
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 37
G+ ++N SVK+L +IP E G I +D+
Sbjct: 50 GLSRDYNPTASVKMLPTFVRSIPDGSEKGDFIALDLG 86
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40
IL++ N++ S + CK+A + GG+++I+DM I++
Sbjct: 265 ILYSANEQLSTIM---CKKAFDAMRSGGRLLILDMVIDD 300
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 14 LLKKCKEAI-PSKDEGGKVIIIDMAIENQSQDKESMETQLCF-----DILMVSLFRGKE- 66
L KK EA +D+ ++++ + A N D+ S L +I+ V L G +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 67 --RSVDDWKKLFLAAGFSHYKITPIL 90
R D W L LAA H +I +L
Sbjct: 74 NARDTDGWTPLHLAADNGHLEIVEVL 99
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 41
+LH+W+D++ V++L++ A ++++ID I+ +
Sbjct: 277 VLHDWDDDDVVRILRRIATAXKPDS---RLLVIDNLIDER 313
>pdb|3PZT|A Chain A, Structure Of The Endo-1,4-Beta-Glucanase From Bacillus
Subtilis 168 With Manganese(Ii) Ion
pdb|3PZT|B Chain B, Structure Of The Endo-1,4-Beta-Glucanase From Bacillus
Subtilis 168 With Manganese(Ii) Ion
pdb|3PZU|A Chain A, P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZU|B Chain B, P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|A Chain A, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|B Chain B, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|C Chain C, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|D Chain D, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
Length = 327
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 8 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF 62
D SVK K KEA+ + E G +IID I N ++ E F M SL+
Sbjct: 99 DNPSVK--NKVKEAVEAAKELGIYVIIDWHILNDGNPNQNKEKAKEFFKEMSSLY 151
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE 46
E S L K C + S+ KV +ID+ IE+ S ++E
Sbjct: 317 ESSSVLSKPCSVTVASEASKKKVDVIDLTIESSSDEEE 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,851,908
Number of Sequences: 62578
Number of extensions: 92461
Number of successful extensions: 283
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 30
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)