Query 040309
Match_columns 100
No_of_seqs 154 out of 1007
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.9 1.4E-22 3E-27 144.3 7.1 96 2-100 245-342 (342)
2 PF00891 Methyltransf_2: O-met 99.8 1.1E-21 2.4E-26 134.5 5.8 74 1-77 166-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.5 2E-13 4.4E-18 96.6 8.7 82 1-87 223-305 (306)
4 PF05891 Methyltransf_PK: AdoM 98.8 9.9E-09 2.1E-13 69.9 5.5 72 2-89 131-202 (218)
5 TIGR00740 methyltransferase, p 98.7 8E-09 1.7E-13 70.7 2.0 79 2-88 131-227 (239)
6 PLN02233 ubiquinone biosynthes 98.5 7.5E-07 1.6E-11 62.1 7.4 90 2-98 154-259 (261)
7 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 1.2E-06 2.6E-11 58.5 8.2 91 2-100 115-223 (223)
8 PRK00216 ubiE ubiquinone/menaq 98.4 1.8E-06 3.9E-11 58.3 8.3 90 2-99 130-237 (239)
9 PTZ00098 phosphoethanolamine N 98.4 1.4E-06 3.1E-11 60.8 7.9 79 2-90 126-204 (263)
10 PRK11873 arsM arsenite S-adeno 98.4 2.8E-06 6E-11 59.2 8.4 76 2-88 155-230 (272)
11 PLN02232 ubiquinone biosynthes 98.3 9.8E-07 2.1E-11 57.3 4.8 82 2-90 53-149 (160)
12 PLN02490 MPBQ/MSBQ methyltrans 98.3 2.9E-06 6.3E-11 61.5 7.5 72 2-90 187-258 (340)
13 PF13489 Methyltransf_23: Meth 98.3 3.1E-06 6.6E-11 53.8 6.3 73 1-85 86-160 (161)
14 PRK15068 tRNA mo(5)U34 methylt 98.2 1E-05 2.3E-10 58.1 8.4 76 2-89 198-275 (322)
15 TIGR00452 methyltransferase, p 98.2 1.2E-05 2.6E-10 57.7 8.5 76 2-89 197-274 (314)
16 TIGR02752 MenG_heptapren 2-hep 98.2 1.2E-05 2.5E-10 54.6 8.0 91 2-100 123-231 (231)
17 PRK15451 tRNA cmo(5)U34 methyl 98.0 1.5E-05 3.3E-10 55.0 5.8 82 2-86 134-228 (247)
18 PLN02336 phosphoethanolamine N 98.0 3.9E-05 8.4E-10 57.4 8.3 74 2-88 341-414 (475)
19 PF06080 DUF938: Protein of un 97.9 9.9E-05 2.1E-09 50.1 8.3 91 1-97 110-202 (204)
20 PLN02244 tocopherol O-methyltr 97.9 4.8E-05 1E-09 54.9 6.8 83 2-89 195-279 (340)
21 PF01209 Ubie_methyltran: ubiE 97.9 4.6E-06 1E-10 57.5 1.2 89 2-97 125-230 (233)
22 smart00828 PKS_MT Methyltransf 97.8 0.00013 2.7E-09 49.3 7.0 71 2-90 76-146 (224)
23 TIGR03438 probable methyltrans 97.8 0.00025 5.4E-09 50.4 8.6 29 2-33 147-175 (301)
24 COG2226 UbiE Methylase involve 97.7 0.00034 7.4E-09 48.5 7.9 80 2-89 128-225 (238)
25 PRK04266 fibrillarin; Provisio 97.6 0.00047 1E-08 47.3 7.7 66 2-90 145-212 (226)
26 PRK08317 hypothetical protein; 97.6 0.00035 7.5E-09 46.9 6.8 79 2-87 96-175 (241)
27 PLN02396 hexaprenyldihydroxybe 97.6 0.0002 4.4E-09 51.6 5.9 76 2-87 207-288 (322)
28 PLN02336 phosphoethanolamine N 97.6 0.00029 6.2E-09 52.7 6.5 68 2-85 112-179 (475)
29 PRK11036 putative S-adenosyl-L 97.5 0.00019 4.2E-09 49.6 4.6 84 2-90 121-209 (255)
30 PF04672 Methyltransf_19: S-ad 97.3 9.8E-05 2.1E-09 51.9 1.6 75 1-85 158-233 (267)
31 PRK14103 trans-aconitate 2-met 97.1 0.0024 5.1E-08 44.1 6.7 77 2-85 98-181 (255)
32 PRK11207 tellurite resistance 97.1 0.0045 9.7E-08 41.4 7.6 65 2-86 104-168 (197)
33 KOG4300 Predicted methyltransf 97.0 0.0026 5.7E-08 43.6 5.7 86 7-98 157-244 (252)
34 PLN02585 magnesium protoporphy 97.0 0.0039 8.5E-08 44.9 6.8 87 2-100 221-314 (315)
35 PRK05134 bifunctional 3-demeth 97.0 0.0039 8.5E-08 42.3 6.5 77 2-87 123-204 (233)
36 KOG1540 Ubiquinone biosynthesi 97.0 0.0043 9.2E-08 43.8 6.6 77 3-85 187-278 (296)
37 TIGR01983 UbiG ubiquinone bios 97.0 0.0029 6.4E-08 42.5 5.8 75 2-87 121-202 (224)
38 TIGR00477 tehB tellurite resis 96.9 0.0072 1.6E-07 40.3 7.2 66 2-87 103-168 (195)
39 PRK07580 Mg-protoporphyrin IX 96.8 0.011 2.4E-07 39.8 7.5 79 2-90 136-216 (230)
40 PF02353 CMAS: Mycolic acid cy 96.7 0.0032 7E-08 44.4 4.7 81 3-89 137-218 (273)
41 PRK06202 hypothetical protein; 96.6 0.0091 2E-07 40.6 6.0 78 2-89 138-223 (232)
42 PF08003 Methyltransf_9: Prote 96.5 0.016 3.4E-07 41.8 6.8 68 12-89 199-268 (315)
43 KOG2361 Predicted methyltransf 96.5 0.0067 1.4E-07 42.4 4.7 79 3-86 154-235 (264)
44 TIGR02021 BchM-ChlM magnesium 96.2 0.011 2.3E-07 39.9 4.6 78 2-90 128-208 (219)
45 PRK11705 cyclopropane fatty ac 96.1 0.042 9.1E-07 40.5 7.6 78 2-90 237-314 (383)
46 COG2230 Cfa Cyclopropane fatty 96.1 0.027 5.9E-07 40.1 6.2 79 3-90 147-225 (283)
47 TIGR00537 hemK_rel_arch HemK-r 96.1 0.08 1.7E-06 34.5 8.1 58 11-99 119-176 (179)
48 PRK06922 hypothetical protein; 96.0 0.0086 1.9E-07 47.1 3.8 33 7-42 512-544 (677)
49 PRK00517 prmA ribosomal protei 95.9 0.098 2.1E-06 36.1 8.5 60 9-99 190-249 (250)
50 PTZ00146 fibrillarin; Provisio 95.9 0.075 1.6E-06 38.1 7.8 67 2-90 206-273 (293)
51 smart00138 MeTrc Methyltransfe 95.8 0.011 2.4E-07 41.4 3.3 33 1-36 211-243 (264)
52 PF12147 Methyltransf_20: Puta 95.6 0.087 1.9E-06 37.9 7.1 84 5-99 221-310 (311)
53 PRK12335 tellurite resistance 95.4 0.1 2.2E-06 36.8 7.1 66 2-87 193-258 (287)
54 PF13847 Methyltransf_31: Meth 94.8 0.01 2.2E-07 37.7 0.5 69 2-80 82-152 (152)
55 TIGR02072 BioC biotin biosynth 94.6 0.15 3.2E-06 34.1 5.9 69 2-87 107-175 (240)
56 PF06859 Bin3: Bicoid-interact 94.5 0.013 2.8E-07 36.1 0.4 75 5-89 17-93 (110)
57 COG4798 Predicted methyltransf 94.4 0.25 5.3E-06 33.9 6.4 63 8-87 142-204 (238)
58 PRK10611 chemotaxis methyltran 94.3 0.057 1.2E-06 38.5 3.4 32 1-35 231-262 (287)
59 PLN03075 nicotianamine synthas 94.3 0.049 1.1E-06 39.0 3.0 31 2-35 203-233 (296)
60 TIGR03840 TMPT_Se_Te thiopurin 94.2 0.54 1.2E-05 32.0 7.9 65 2-87 122-186 (213)
61 PRK14968 putative methyltransf 93.9 0.78 1.7E-05 29.6 8.0 48 11-89 127-174 (188)
62 PF05219 DREV: DREV methyltran 93.6 0.38 8.2E-06 34.0 6.4 63 12-90 168-242 (265)
63 PRK13255 thiopurine S-methyltr 93.4 0.9 1.9E-05 31.0 7.8 65 2-88 125-190 (218)
64 KOG2899 Predicted methyltransf 93.1 0.13 2.9E-06 36.2 3.5 70 5-84 182-253 (288)
65 PRK01683 trans-aconitate 2-met 92.9 0.44 9.5E-06 32.7 5.9 71 2-83 102-182 (258)
66 TIGR03534 RF_mod_PrmC protein- 92.7 0.46 1E-05 32.2 5.7 46 12-89 197-242 (251)
67 TIGR03439 methyl_EasF probable 92.6 0.2 4.4E-06 36.2 4.0 33 2-37 166-200 (319)
68 PRK10258 biotin biosynthesis p 92.6 0.69 1.5E-05 31.7 6.5 64 11-83 119-182 (251)
69 PRK08287 cobalt-precorrin-6Y C 92.3 0.66 1.4E-05 30.4 5.9 46 11-87 110-155 (187)
70 COG2227 UbiG 2-polyprenyl-3-me 92.3 0.21 4.6E-06 34.8 3.5 76 2-88 133-215 (243)
71 PRK05785 hypothetical protein; 92.2 1 2.2E-05 30.7 6.9 90 2-99 119-223 (226)
72 PF05148 Methyltransf_8: Hypot 92.1 0.52 1.1E-05 32.4 5.2 60 11-99 137-196 (219)
73 PF01739 CheR: CheR methyltran 90.4 0.19 4.2E-06 33.8 1.9 32 1-35 144-175 (196)
74 PF10017 Methyltransf_33: Hist 90.2 0.8 1.7E-05 28.6 4.4 33 63-95 92-125 (127)
75 TIGR02469 CbiT precorrin-6Y C5 89.7 0.59 1.3E-05 27.9 3.5 27 5-34 95-121 (124)
76 PF11968 DUF3321: Putative met 88.6 3.1 6.7E-05 28.7 6.6 59 8-90 120-183 (219)
77 PF05401 NodS: Nodulation prot 88.1 0.54 1.2E-05 32.0 2.7 32 2-36 115-147 (201)
78 PRK09328 N5-glutamine S-adenos 88.0 2.6 5.6E-05 29.0 6.1 46 11-88 217-262 (275)
79 PRK13256 thiopurine S-methyltr 87.6 1.8 3.9E-05 29.9 5.1 42 2-46 133-174 (226)
80 PF01234 NNMT_PNMT_TEMT: NNMT/ 86.9 1.5 3.2E-05 30.9 4.4 65 8-88 175-239 (256)
81 TIGR00027 mthyl_TIGR00027 meth 86.5 6.3 0.00014 27.6 7.4 77 2-86 167-248 (260)
82 TIGR03587 Pse_Me-ase pseudamin 86.2 1.7 3.7E-05 29.2 4.3 35 1-40 113-147 (204)
83 COG4627 Uncharacterized protei 86.0 0.79 1.7E-05 30.4 2.4 31 1-34 55-85 (185)
84 PF05724 TPMT: Thiopurine S-me 85.7 2.1 4.6E-05 29.2 4.6 65 2-88 125-190 (218)
85 PRK15001 SAM-dependent 23S rib 85.7 1.5 3.2E-05 32.5 4.1 29 4-35 312-340 (378)
86 PRK00377 cbiT cobalt-precorrin 84.9 4.4 9.5E-05 26.8 5.8 23 8-33 121-143 (198)
87 KOG1270 Methyltransferases [Co 84.6 1.6 3.4E-05 31.1 3.6 75 3-87 168-248 (282)
88 PRK14967 putative methyltransf 84.1 9.2 0.0002 25.8 7.2 25 11-38 138-162 (223)
89 cd02440 AdoMet_MTases S-adenos 82.9 2.8 6.1E-05 23.1 3.7 24 8-34 80-103 (107)
90 TIGR02081 metW methionine bios 82.4 2.1 4.6E-05 28.2 3.4 26 64-89 143-168 (194)
91 PF08845 SymE_toxin: Toxin Sym 82.2 1 2.3E-05 24.4 1.6 15 74-88 31-45 (57)
92 KOG3045 Predicted RNA methylas 80.4 11 0.00023 27.2 6.4 60 11-99 243-302 (325)
93 TIGR03439 methyl_EasF probable 80.2 3.2 7E-05 30.1 4.0 33 63-95 284-317 (319)
94 COG0503 Apt Adenine/guanine ph 79.3 6.9 0.00015 25.9 5.1 42 19-88 110-151 (179)
95 PF11899 DUF3419: Protein of u 79.2 2.9 6.3E-05 31.1 3.5 33 5-40 306-339 (380)
96 COG1352 CheR Methylase of chem 77.0 3.8 8.2E-05 29.1 3.4 32 1-35 210-241 (268)
97 PRK08558 adenine phosphoribosy 75.9 7.8 0.00017 26.9 4.7 67 20-89 171-237 (238)
98 COG4106 Tam Trans-aconitate me 75.9 21 0.00046 25.0 6.7 81 12-99 109-202 (257)
99 PF03291 Pox_MCEL: mRNA cappin 75.3 2 4.3E-05 31.3 1.7 78 7-87 161-266 (331)
100 PRK09489 rsmC 16S ribosomal RN 74.9 5.4 0.00012 29.1 3.9 27 7-36 278-304 (342)
101 PF08002 DUF1697: Protein of u 74.4 5.3 0.00012 25.3 3.4 31 61-91 12-43 (137)
102 PF07109 Mg-por_mtran_C: Magne 74.0 2.9 6.3E-05 25.2 1.9 84 2-100 4-97 (97)
103 PF07942 N2227: N2227-like pro 73.2 23 0.00051 25.2 6.6 63 10-88 180-242 (270)
104 PF07927 YcfA: YcfA-like prote 72.7 4.5 9.7E-05 21.2 2.3 17 70-86 2-18 (56)
105 cd01093 CRIB_PAK_like PAK (p21 71.5 2.3 5.1E-05 21.9 1.0 20 66-85 25-44 (46)
106 PF09382 RQC: RQC domain; Int 71.2 2.4 5.2E-05 25.1 1.2 65 9-82 4-72 (106)
107 TIGR00438 rrmJ cell division p 70.7 6.8 0.00015 25.6 3.4 21 11-34 125-145 (188)
108 COG3315 O-Methyltransferase in 70.5 24 0.00052 25.3 6.3 81 2-87 179-263 (297)
109 COG4301 Uncharacterized conser 70.1 8.3 0.00018 27.6 3.7 35 2-39 163-198 (321)
110 PF03848 TehB: Tellurite resis 70.1 4.8 0.0001 27.1 2.5 33 2-37 103-135 (192)
111 PF12419 DUF3670: SNF2 Helicas 70.0 20 0.00044 22.7 5.3 73 5-80 10-97 (141)
112 PRK07402 precorrin-6B methylas 69.9 6 0.00013 26.0 3.0 24 10-36 120-143 (196)
113 PRK11188 rrmJ 23S rRNA methylt 69.0 9.7 0.00021 25.6 3.8 23 12-37 145-167 (209)
114 PRK00121 trmB tRNA (guanine-N( 68.2 5.7 0.00012 26.5 2.6 22 11-35 135-156 (202)
115 TIGR00006 S-adenosyl-methyltra 66.2 9.5 0.00021 27.6 3.5 29 10-41 218-246 (305)
116 COG3581 Uncharacterized protei 64.8 5.8 0.00013 29.8 2.2 36 55-90 73-111 (420)
117 TIGR00446 nop2p NOL1/NOP2/sun 64.4 14 0.00031 25.7 4.1 25 12-39 179-203 (264)
118 PRK00050 16S rRNA m(4)C1402 me 63.1 12 0.00026 26.9 3.5 30 10-42 214-243 (296)
119 PRK00107 gidB 16S rRNA methylt 62.7 11 0.00023 25.2 3.0 22 11-35 124-145 (187)
120 TIGR01033 DNA-binding regulato 62.2 25 0.00054 24.5 4.9 14 27-40 92-105 (238)
121 KOG1975 mRNA cap methyltransfe 61.6 11 0.00025 27.9 3.2 23 7-32 212-234 (389)
122 TIGR00091 tRNA (guanine-N(7)-) 61.4 11 0.00024 24.9 3.0 21 12-35 112-132 (194)
123 TIGR00563 rsmB ribosomal RNA s 60.8 11 0.00024 28.1 3.2 28 11-41 347-374 (426)
124 PRK14904 16S rRNA methyltransf 60.5 16 0.00035 27.4 4.0 26 12-40 357-382 (445)
125 PF13592 HTH_33: Winged helix- 60.1 9.2 0.0002 20.5 2.0 27 63-89 18-44 (60)
126 PRK09219 xanthine phosphoribos 60.1 18 0.00039 24.2 3.8 65 21-90 113-179 (189)
127 TIGR00406 prmA ribosomal prote 59.7 18 0.00039 25.5 4.0 24 10-36 237-260 (288)
128 COG1187 RsuA 16S rRNA uridine- 59.4 11 0.00024 26.5 2.8 29 59-90 186-214 (248)
129 PRK11933 yebU rRNA (cytosine-C 59.3 13 0.00028 28.5 3.3 30 5-37 208-244 (470)
130 COG0275 Predicted S-adenosylme 59.3 16 0.00034 26.6 3.6 29 10-41 222-250 (314)
131 KOG1331 Predicted methyltransf 59.0 12 0.00026 26.9 2.9 33 2-37 112-145 (293)
132 PF01206 TusA: Sulfurtransfera 58.6 17 0.00036 19.8 3.0 28 68-95 39-66 (70)
133 PF01709 Transcrip_reg: Transc 58.6 6 0.00013 27.4 1.3 13 27-39 88-100 (234)
134 PF12780 AAA_8: P-loop contain 58.2 18 0.0004 25.5 3.8 73 9-87 14-92 (268)
135 PRK04457 spermidine synthase; 58.1 14 0.0003 25.8 3.1 20 12-34 157-176 (262)
136 PF08671 SinI: Anti-repressor 56.7 2.5 5.5E-05 19.9 -0.5 16 70-85 3-21 (30)
137 PRK09213 pur operon repressor; 56.6 39 0.00084 24.1 5.1 21 20-43 191-211 (271)
138 smart00874 B5 tRNA synthetase 55.9 17 0.00037 19.8 2.7 21 64-84 16-36 (71)
139 PRK00110 hypothetical protein; 55.8 40 0.00086 23.6 5.0 14 27-40 92-105 (245)
140 PRK14901 16S rRNA methyltransf 55.3 16 0.00035 27.4 3.2 25 12-39 364-388 (434)
141 PF05175 MTS: Methyltransferas 54.4 13 0.00028 24.0 2.3 23 10-35 118-140 (170)
142 TIGR01743 purR_Bsub pur operon 54.3 37 0.0008 24.2 4.7 21 20-43 189-209 (268)
143 PF00543 P-II: Nitrogen regula 54.3 17 0.00036 21.5 2.7 30 7-36 63-93 (102)
144 PRK10556 hypothetical protein; 54.2 18 0.00039 22.0 2.7 21 68-88 4-24 (111)
145 PF10087 DUF2325: Uncharacteri 53.7 16 0.00035 21.4 2.5 25 62-86 5-29 (97)
146 PF01795 Methyltransf_5: MraW 53.5 10 0.00022 27.5 1.9 27 9-38 218-244 (310)
147 TIGR02764 spore_ybaN_pdaB poly 53.5 16 0.00035 23.9 2.7 57 4-86 131-187 (191)
148 PF13137 DUF3983: Protein of u 53.3 7.2 0.00016 18.8 0.7 16 65-80 18-33 (34)
149 PF11312 DUF3115: Protein of u 52.8 21 0.00045 26.1 3.3 26 9-37 219-244 (315)
150 PF02636 Methyltransf_28: Puta 52.4 25 0.00054 24.2 3.6 28 10-40 172-199 (252)
151 KOG3987 Uncharacterized conser 52.3 28 0.00061 24.4 3.7 68 12-89 186-261 (288)
152 TIGR00138 gidB 16S rRNA methyl 52.1 20 0.00043 23.6 3.0 20 12-34 122-141 (181)
153 PF06968 BATS: Biotin and Thia 52.1 38 0.00083 19.8 3.9 70 5-82 18-92 (93)
154 PF03484 B5: tRNA synthetase B 52.0 20 0.00043 19.8 2.6 23 64-86 16-38 (70)
155 COG2242 CobL Precorrin-6B meth 51.9 20 0.00043 24.2 2.9 25 11-38 114-138 (187)
156 PF03698 UPF0180: Uncharacteri 51.0 27 0.00059 20.2 3.1 26 64-89 5-30 (80)
157 PF01316 Arg_repressor: Argini 50.6 12 0.00026 21.1 1.5 23 63-85 16-38 (70)
158 cd03423 SirA SirA (also known 50.6 41 0.00089 18.3 3.9 28 68-95 38-65 (69)
159 COG4822 CbiK Cobalamin biosynt 50.5 24 0.00052 24.7 3.2 19 68-86 217-235 (265)
160 TIGR01744 XPRTase xanthine pho 50.4 34 0.00075 22.9 3.9 66 20-90 112-179 (191)
161 KOG2918 Carboxymethyl transfer 50.3 85 0.0018 23.2 6.0 75 3-88 198-277 (335)
162 PRK11057 ATP-dependent DNA hel 50.1 69 0.0015 25.2 6.0 61 10-79 415-476 (607)
163 cd03422 YedF YedF is a bacteri 50.0 43 0.00092 18.4 3.8 27 68-94 38-64 (69)
164 COG1902 NemA NADH:flavin oxido 49.7 1E+02 0.0022 22.9 6.6 82 5-91 76-173 (363)
165 PRK04280 arginine repressor; P 49.6 17 0.00037 23.4 2.3 23 63-85 15-37 (148)
166 PRK12378 hypothetical protein; 49.6 46 0.00099 23.2 4.5 14 27-40 89-102 (235)
167 PRK13605 endoribonuclease SymE 49.4 8.2 0.00018 23.9 0.7 14 73-86 44-57 (113)
168 PRK13810 orotate phosphoribosy 49.2 69 0.0015 21.3 5.2 57 27-89 121-182 (187)
169 PF14814 UB2H: Bifunctional tr 49.2 17 0.00036 21.0 2.0 25 63-87 3-27 (85)
170 KOG0902 Phosphatidylinositol 4 49.1 24 0.00052 31.1 3.5 29 72-100 1569-1601(1803)
171 COG2813 RsmC 16S RNA G1207 met 48.3 28 0.00062 25.2 3.4 27 7-36 241-267 (300)
172 cd03413 CbiK_C Anaerobic cobal 48.1 21 0.00047 21.4 2.4 18 69-86 81-98 (103)
173 PF03514 GRAS: GRAS domain fam 48.0 13 0.00028 27.5 1.7 28 60-87 298-330 (374)
174 PF09400 DUF2002: Protein of u 47.9 25 0.00055 21.5 2.7 21 68-88 4-24 (111)
175 COG4421 Capsular polysaccharid 47.7 19 0.00042 26.6 2.5 21 67-87 241-261 (368)
176 PRK06852 aldolase; Validated 47.5 19 0.00041 26.1 2.5 30 3-35 8-37 (304)
177 COG0217 Uncharacterized conser 47.4 39 0.00084 23.8 3.9 61 27-87 92-167 (241)
178 PRK03612 spermidine synthase; 47.4 19 0.0004 27.8 2.6 20 12-34 395-414 (521)
179 PRK11018 hypothetical protein; 47.3 52 0.0011 18.6 3.9 27 68-94 47-73 (78)
180 PF13344 Hydrolase_6: Haloacid 47.3 19 0.00041 21.3 2.1 29 56-84 31-59 (101)
181 TIGR00423 radical SAM domain p 47.0 32 0.00069 24.5 3.6 23 66-88 282-304 (309)
182 COG1438 ArgR Arginine represso 46.7 20 0.00043 23.3 2.2 23 63-85 17-39 (150)
183 PF13659 Methyltransf_26: Meth 46.7 13 0.00028 21.8 1.4 22 10-34 93-114 (117)
184 PRK15450 signal transduction p 46.6 14 0.0003 21.6 1.3 20 61-80 66-85 (85)
185 PRK10901 16S rRNA methyltransf 46.4 34 0.00074 25.6 3.7 26 12-40 352-377 (427)
186 cd05167 PI4Kc_III_alpha Phosph 45.8 48 0.001 24.1 4.3 30 71-100 76-109 (311)
187 PRK09662 GspL-like protein; Pr 45.3 20 0.00042 25.8 2.2 20 70-89 8-27 (286)
188 PF00156 Pribosyltran: Phospho 45.2 57 0.0012 19.3 4.1 20 68-87 103-122 (125)
189 cd00291 SirA_YedF_YeeD SirA, Y 45.1 49 0.0011 17.6 3.9 25 68-92 38-62 (69)
190 PF03793 PASTA: PASTA domain; 44.9 42 0.00092 17.6 3.1 21 67-87 9-29 (63)
191 PRK01581 speE spermidine synth 44.8 24 0.00052 26.4 2.7 20 12-34 248-267 (374)
192 PRK05298 excinuclease ABC subu 44.6 27 0.00059 27.8 3.1 41 60-100 160-204 (652)
193 TIGR02873 spore_ylxY probable 44.2 23 0.0005 24.9 2.5 29 4-35 210-238 (268)
194 TIGR01177 conserved hypothetic 44.2 39 0.00084 24.3 3.7 22 10-34 272-293 (329)
195 PF06325 PrmA: Ribosomal prote 44.0 94 0.002 22.3 5.6 28 69-97 265-292 (295)
196 COG0500 SmtA SAM-dependent met 43.8 54 0.0012 18.6 3.8 27 11-40 134-160 (257)
197 PF05772 NinB: NinB protein; 43.8 52 0.0011 20.7 3.8 36 54-89 48-87 (127)
198 COG3053 CitC Citrate lyase syn 43.6 28 0.00061 25.5 2.8 32 64-97 93-124 (352)
199 PRK11805 N5-glutamine S-adenos 43.3 36 0.00078 24.4 3.4 21 10-33 241-261 (307)
200 PRK13587 1-(5-phosphoribosyl)- 43.3 88 0.0019 21.5 5.2 56 29-85 163-219 (234)
201 PF14117 DUF4287: Domain of un 43.2 25 0.00054 19.3 2.0 15 66-80 14-28 (61)
202 TIGR03533 L3_gln_methyl protei 42.8 37 0.00081 23.9 3.4 20 11-33 230-249 (284)
203 PF07862 Nif11: Nitrogen fixat 42.6 29 0.00063 17.6 2.1 19 66-84 26-44 (49)
204 PHA00457 inhibitor of host bac 42.3 35 0.00075 18.8 2.4 13 77-89 48-60 (63)
205 cd03420 SirA_RHOD_Pry_redox Si 42.1 59 0.0013 17.7 3.8 27 68-94 38-64 (69)
206 PF05430 Methyltransf_30: S-ad 42.1 67 0.0015 20.0 4.1 29 70-98 93-121 (124)
207 PRK11088 rrmA 23S rRNA methylt 41.9 28 0.00061 24.1 2.6 19 14-35 163-181 (272)
208 PLN02366 spermidine synthase 41.6 31 0.00068 24.8 2.8 20 11-33 185-204 (308)
209 PF11850 DUF3370: Protein of u 41.3 40 0.00087 25.7 3.4 76 7-85 149-241 (441)
210 KOG2198 tRNA cytosine-5-methyl 41.1 28 0.00061 26.0 2.5 27 11-40 275-301 (375)
211 PF08373 RAP: RAP domain; Int 40.9 30 0.00065 18.0 2.1 15 73-87 24-38 (58)
212 PF00786 PBD: P21-Rho-binding 40.8 21 0.00045 19.2 1.4 21 65-85 23-43 (59)
213 COG4976 Predicted methyltransf 40.6 1.3E+02 0.0029 21.4 5.8 61 13-89 206-266 (287)
214 cd04723 HisA_HisF Phosphoribos 40.5 1.2E+02 0.0026 20.7 6.7 68 11-85 148-216 (233)
215 COG1724 Predicted RNA binding 39.9 51 0.0011 18.5 2.9 19 68-86 8-26 (66)
216 TIGR00417 speE spermidine synt 39.4 34 0.00074 23.8 2.7 21 11-34 165-185 (270)
217 PRK03094 hypothetical protein; 39.3 61 0.0013 18.8 3.3 25 64-88 5-29 (80)
218 PF07021 MetW: Methionine bios 39.2 53 0.0011 22.3 3.5 29 63-91 142-170 (193)
219 COG5459 Predicted rRNA methyla 39.1 49 0.0011 25.1 3.5 35 2-39 195-229 (484)
220 PRK14903 16S rRNA methyltransf 39.0 41 0.00088 25.3 3.2 25 12-39 346-370 (431)
221 PF00675 Peptidase_M16: Insuli 38.8 59 0.0013 20.0 3.5 59 27-85 8-66 (149)
222 PRK14902 16S rRNA methyltransf 38.4 50 0.0011 24.8 3.6 24 12-38 359-382 (444)
223 PF12646 DUF3783: Domain of un 38.2 40 0.00087 18.0 2.3 20 2-21 5-24 (58)
224 PLN03137 ATP-dependent DNA hel 37.9 84 0.0018 27.2 5.0 66 9-83 878-947 (1195)
225 PF01870 Hjc: Archaeal hollida 37.8 47 0.001 19.5 2.7 19 68-86 2-20 (88)
226 cd00893 PI4Kc_III Phosphoinosi 37.5 71 0.0015 22.9 4.1 30 71-100 55-88 (289)
227 PRK11524 putative methyltransf 37.3 49 0.0011 23.3 3.2 20 12-34 60-79 (284)
228 cd05175 PI3Kc_IA_alpha Phospho 37.1 74 0.0016 23.8 4.2 30 71-100 121-154 (366)
229 PF01555 N6_N4_Mtase: DNA meth 36.8 28 0.0006 22.7 1.9 21 11-34 35-55 (231)
230 PF08468 MTS_N: Methyltransfer 36.5 67 0.0014 20.8 3.5 26 8-36 81-106 (155)
231 PRK05066 arginine repressor; P 36.4 28 0.00061 22.6 1.8 24 62-85 19-43 (156)
232 PRK13812 orotate phosphoribosy 36.3 75 0.0016 20.9 3.8 57 27-89 106-167 (176)
233 cd04276 ZnMc_MMP_like_2 Zinc-d 36.1 43 0.00093 22.6 2.7 22 66-87 27-48 (197)
234 COG2264 PrmA Ribosomal protein 36.1 1.7E+02 0.0037 21.3 6.7 27 70-96 270-296 (300)
235 PRK09472 ftsA cell division pr 36.1 1.1E+02 0.0023 22.9 5.0 79 6-88 104-187 (420)
236 PRK00811 spermidine synthase; 36.0 44 0.00095 23.6 2.8 21 11-34 170-190 (283)
237 PF13167 GTP-bdg_N: GTP-bindin 36.0 39 0.00085 20.2 2.2 22 66-87 7-28 (95)
238 PF06200 tify: tify domain; I 35.8 31 0.00067 16.9 1.5 17 2-18 18-34 (36)
239 COG3669 Alpha-L-fucosidase [Ca 35.4 41 0.00089 25.5 2.7 24 62-85 49-72 (430)
240 COG4301 Uncharacterized conser 35.3 35 0.00076 24.6 2.2 35 63-97 283-318 (321)
241 TIGR00336 pyrE orotate phospho 35.3 89 0.0019 20.3 4.0 19 68-86 123-141 (173)
242 PRK10689 transcription-repair 35.3 40 0.00087 28.9 2.9 42 59-100 128-173 (1147)
243 PF09286 Pro-kuma_activ: Pro-k 35.3 50 0.0011 20.6 2.8 25 65-89 60-84 (143)
244 PF08952 DUF1866: Domain of un 34.6 21 0.00045 23.2 0.9 27 7-35 8-34 (146)
245 KOG0061 Transporter, ABC super 34.5 1.9E+02 0.0041 23.0 6.3 63 9-85 207-271 (613)
246 PF03059 NAS: Nicotianamine sy 34.1 45 0.00098 23.8 2.6 23 9-34 207-229 (276)
247 cd05168 PI4Kc_III_beta Phospho 34.0 88 0.0019 22.5 4.1 29 72-100 56-88 (293)
248 cd00895 PI3Kc_C2_beta Phosphoi 34.0 83 0.0018 23.4 4.1 31 70-100 113-147 (354)
249 cd00891 PI3Kc Phosphoinositide 34.0 86 0.0019 23.1 4.1 29 72-100 114-146 (352)
250 COG1060 ThiH Thiamine biosynth 33.8 43 0.00093 24.9 2.6 25 64-88 334-358 (370)
251 COG0285 FolC Folylpolyglutamat 33.6 47 0.001 25.2 2.8 26 58-83 48-73 (427)
252 cd04411 Ribosomal_P1_P2_L12p R 33.2 37 0.00081 20.6 1.8 27 59-85 9-35 (105)
253 PF00107 ADH_zinc_N: Zinc-bind 33.1 37 0.00079 20.2 1.9 24 12-38 69-92 (130)
254 PRK06402 rpl12p 50S ribosomal 32.9 38 0.00082 20.7 1.8 27 59-85 9-35 (106)
255 PRK13942 protein-L-isoaspartat 32.8 37 0.00081 22.7 2.0 20 12-34 156-175 (212)
256 TIGR03798 ocin_TIGR03798 bacte 32.6 49 0.0011 17.9 2.2 18 67-84 25-42 (64)
257 PF05924 SAMP: SAMP Motif; In 32.5 49 0.0011 14.0 1.6 11 13-23 4-15 (20)
258 TIGR03685 L21P_arch 50S riboso 32.1 39 0.00084 20.6 1.8 26 58-83 8-33 (105)
259 cd05166 PI3Kc_II Phosphoinosit 32.0 95 0.0021 23.0 4.1 29 72-100 114-146 (353)
260 cd05832 Ribosomal_L12p Ribosom 31.9 39 0.00084 20.7 1.8 27 58-84 8-34 (106)
261 TIGR00631 uvrb excinuclease AB 31.9 59 0.0013 26.1 3.2 41 60-100 157-201 (655)
262 PF11455 DUF3018: Protein of 31.9 64 0.0014 18.0 2.5 21 69-89 5-25 (65)
263 PF06962 rRNA_methylase: Putat 31.8 39 0.00085 21.7 1.9 28 9-39 69-96 (140)
264 KOG2798 Putative trehalase [Ca 31.8 2.2E+02 0.0048 21.3 6.6 65 10-89 274-338 (369)
265 PF00724 Oxidored_FMN: NADH:fl 31.6 1.7E+02 0.0037 21.2 5.4 85 4-92 72-174 (341)
266 PLN02781 Probable caffeoyl-CoA 31.6 90 0.0019 21.3 3.7 27 9-39 155-181 (234)
267 COG3019 Predicted metal-bindin 31.6 59 0.0013 21.1 2.6 18 70-87 40-57 (149)
268 TIGR03709 PPK2_rel_1 polyphosp 31.5 72 0.0016 22.6 3.3 69 9-87 97-166 (264)
269 COG0144 Sun tRNA and rRNA cyto 31.4 51 0.0011 24.2 2.7 26 12-40 268-293 (355)
270 cd02554 PseudoU_synth_RluF Pse 31.4 63 0.0014 21.1 2.8 26 62-90 115-140 (164)
271 cd05173 PI3Kc_IA_beta Phosphoi 31.2 1E+02 0.0022 22.9 4.2 29 72-100 118-150 (362)
272 cd04882 ACT_Bt0572_2 C-termina 31.2 56 0.0012 16.8 2.2 15 69-83 50-64 (65)
273 TIGR03704 PrmC_rel_meth putati 31.1 86 0.0019 21.7 3.6 20 12-34 196-215 (251)
274 COG2326 Uncharacterized conser 31.1 88 0.0019 22.4 3.6 69 9-87 115-184 (270)
275 PF12101 DUF3577: Protein of u 31.0 74 0.0016 20.4 3.0 27 8-37 60-86 (137)
276 PF01189 Nol1_Nop2_Fmu: NOL1/N 31.0 23 0.00049 25.1 0.7 25 12-39 195-223 (283)
277 COG4808 Uncharacterized protei 31.0 42 0.00092 21.7 1.9 22 63-84 130-151 (152)
278 PRK02304 adenine phosphoribosy 31.0 1.2E+02 0.0025 19.7 4.1 21 67-87 128-148 (175)
279 PF07095 IgaA: Intracellular g 30.6 56 0.0012 26.5 2.8 22 15-36 562-583 (705)
280 TIGR00536 hemK_fam HemK family 30.6 78 0.0017 22.2 3.4 23 10-36 222-244 (284)
281 PRK13811 orotate phosphoribosy 30.5 1E+02 0.0022 20.0 3.8 57 27-89 103-164 (170)
282 cd05177 PI3Kc_C2_gamma Phospho 30.5 1.2E+02 0.0026 22.5 4.4 28 73-100 116-147 (354)
283 PF04298 Zn_peptidase_2: Putat 30.3 80 0.0017 21.9 3.3 28 64-91 34-62 (222)
284 PF13399 LytR_C: LytR cell env 30.2 55 0.0012 18.6 2.2 24 64-87 13-36 (90)
285 cd00132 CRIB PAK (p21 activate 30.2 48 0.001 16.5 1.7 15 68-82 27-41 (42)
286 smart00876 BATS Biotin and Thi 30.2 1.2E+02 0.0026 17.6 4.4 25 6-34 20-44 (94)
287 TIGR03366 HpnZ_proposed putati 30.1 1.7E+02 0.0037 20.0 5.0 22 14-38 200-221 (280)
288 PRK13944 protein-L-isoaspartat 29.8 54 0.0012 21.8 2.4 19 13-34 154-172 (205)
289 TIGR03707 PPK2_P_aer polyphosp 29.8 69 0.0015 22.2 2.9 70 8-87 71-141 (230)
290 PRK12560 adenine phosphoribosy 29.7 1.4E+02 0.003 19.8 4.3 62 27-90 113-177 (187)
291 PF03492 Methyltransf_7: SAM d 29.6 2.2E+02 0.0048 20.7 6.1 74 11-87 162-252 (334)
292 PRK00312 pcm protein-L-isoaspa 29.6 53 0.0011 21.7 2.3 22 11-35 154-175 (212)
293 cd03067 PDI_b_PDIR_N PDIb fami 29.5 1.1E+02 0.0023 18.9 3.4 26 10-38 35-60 (112)
294 COG5443 FlbT Flagellar biosynt 29.5 48 0.001 21.2 1.9 52 21-77 8-83 (148)
295 TIGR00080 pimt protein-L-isoas 29.5 43 0.00092 22.3 1.8 20 12-34 157-176 (215)
296 PRK00455 pyrE orotate phosphor 29.2 1.1E+02 0.0024 20.3 3.8 57 27-89 112-173 (202)
297 PRK13699 putative methylase; P 29.1 1E+02 0.0022 21.1 3.7 21 10-33 50-70 (227)
298 PF02479 Herpes_IE68: Herpesvi 28.9 57 0.0012 20.8 2.2 30 50-80 61-90 (132)
299 PF11590 DNAPolymera_Pol: DNA 28.4 58 0.0013 16.4 1.7 16 70-85 1-16 (41)
300 COG2519 GCD14 tRNA(1-methylade 28.4 95 0.0021 22.1 3.4 31 4-39 169-199 (256)
301 cd05176 PI3Kc_C2_alpha Phospho 28.4 1.4E+02 0.0029 22.3 4.4 29 72-100 114-146 (353)
302 COG4004 Uncharacterized protei 28.3 1.4E+02 0.003 17.9 4.8 38 63-100 8-49 (96)
303 PF08676 MutL_C: MutL C termin 28.1 1.2E+02 0.0027 18.6 3.7 19 67-85 66-84 (144)
304 PRK00299 sulfur transfer prote 28.0 1.2E+02 0.0026 17.1 3.9 26 68-93 48-73 (81)
305 cd04909 ACT_PDH-BS C-terminal 27.8 58 0.0013 17.2 1.9 16 68-83 54-69 (69)
306 cd04908 ACT_Bt0572_1 N-termina 27.7 67 0.0014 17.0 2.1 16 68-83 49-64 (66)
307 PF00403 HMA: Heavy-metal-asso 27.5 69 0.0015 16.6 2.2 57 5-82 6-62 (62)
308 COG1743 Adenine-specific DNA m 27.5 1.6E+02 0.0036 24.5 4.9 25 11-38 567-591 (875)
309 cd00894 PI3Kc_IB_gamma Phospho 27.5 1.2E+02 0.0025 22.7 3.9 29 72-100 123-155 (365)
310 PRK14121 tRNA (guanine-N(7)-)- 27.2 86 0.0019 23.6 3.2 71 12-87 215-285 (390)
311 PF05336 DUF718: Domain of unk 26.9 1.5E+02 0.0032 17.7 3.9 32 68-99 24-58 (106)
312 COG5440 Uncharacterized conser 26.8 89 0.0019 20.5 2.8 22 68-89 6-27 (161)
313 PF14403 CP_ATPgrasp_2: Circul 26.7 82 0.0018 24.2 3.1 27 63-89 356-385 (445)
314 cd05174 PI3Kc_IA_delta Phospho 26.7 1.3E+02 0.0029 22.3 4.1 29 72-100 118-150 (361)
315 PHA03411 putative methyltransf 26.7 54 0.0012 23.5 2.0 16 68-83 194-209 (279)
316 PRK05500 bifunctional orotidin 26.6 1.9E+02 0.0042 22.4 5.0 57 27-89 392-453 (477)
317 cd05165 PI3Kc_I Phosphoinositi 26.5 1.3E+02 0.0029 22.4 4.1 29 72-100 122-154 (366)
318 TIGR00268 conserved hypothetic 26.3 1.4E+02 0.003 20.6 4.0 30 69-99 187-216 (252)
319 PF10281 Ish1: Putative stress 26.1 80 0.0017 15.1 2.1 18 67-84 4-21 (38)
320 PF06258 Mito_fiss_Elm1: Mitoc 25.8 76 0.0017 22.9 2.7 29 4-34 160-188 (311)
321 COG4551 Predicted protein tyro 25.7 1E+02 0.0022 18.7 2.7 22 11-36 62-83 (109)
322 COG0566 SpoU rRNA methylases [ 25.5 1.3E+02 0.0029 21.0 3.8 23 68-90 171-193 (260)
323 PRK12791 flbT flagellar biosyn 25.5 1E+02 0.0022 19.6 2.9 18 21-41 6-23 (131)
324 PF08901 DUF1847: Protein of u 25.3 53 0.0012 21.6 1.6 29 60-88 61-89 (157)
325 PF10354 DUF2431: Domain of un 25.3 2E+02 0.0043 18.7 5.8 49 12-89 105-153 (166)
326 PF13405 EF-hand_6: EF-hand do 25.3 64 0.0014 14.4 1.6 18 63-80 13-31 (31)
327 PF12368 DUF3650: Protein of u 25.2 58 0.0013 15.1 1.3 14 4-17 14-27 (28)
328 KOG2233 Alpha-N-acetylglucosam 25.2 69 0.0015 25.2 2.4 27 6-40 291-317 (666)
329 COG2104 ThiS Sulfur transfer p 25.1 52 0.0011 18.3 1.4 27 60-86 5-34 (68)
330 PRK09489 rsmC 16S ribosomal RN 25.1 1.2E+02 0.0027 22.1 3.7 28 9-39 89-116 (342)
331 PF06557 DUF1122: Protein of u 24.9 78 0.0017 21.0 2.4 62 9-89 63-124 (170)
332 cd03319 L-Ala-DL-Glu_epimerase 24.9 2.4E+02 0.0051 20.0 5.1 28 62-89 233-260 (316)
333 COG2453 CDC14 Predicted protei 24.7 1.2E+02 0.0026 19.8 3.3 27 6-35 86-112 (180)
334 PF01536 SAM_decarbox: Adenosy 24.6 1.4E+02 0.0031 21.9 3.9 28 65-92 31-58 (331)
335 COG2609 AceE Pyruvate dehydrog 24.6 3.1E+02 0.0068 22.8 5.9 21 68-88 274-294 (887)
336 TIGR01367 pyrE_Therm orotate p 24.6 2.1E+02 0.0046 18.9 4.5 16 27-42 104-119 (187)
337 PRK15440 L-rhamnonate dehydrat 24.2 1.4E+02 0.0031 22.2 3.9 25 63-87 267-291 (394)
338 KOG1136 Predicted cleavage and 24.2 72 0.0016 24.0 2.3 27 10-39 217-243 (501)
339 COG2738 Predicted Zn-dependent 24.2 1.1E+02 0.0023 21.1 3.0 30 64-93 37-67 (226)
340 cd01123 Rad51_DMC1_radA Rad51_ 24.2 1.2E+02 0.0027 20.1 3.4 34 4-38 92-125 (235)
341 PRK06031 phosphoribosyltransfe 24.2 2E+02 0.0044 19.9 4.4 17 27-43 153-169 (233)
342 PF05134 T2SL: Type II secreti 24.0 1E+02 0.0023 20.9 3.0 22 68-89 113-134 (230)
343 PF04504 DUF573: Protein of un 24.0 75 0.0016 18.9 2.0 19 5-23 6-24 (98)
344 PF14538 Raptor_N: Raptor N-te 24.0 1.8E+02 0.0038 18.8 3.9 30 3-36 69-98 (154)
345 KOG1719 Dual specificity phosp 23.9 51 0.0011 21.9 1.4 16 4-19 135-150 (183)
346 cd04883 ACT_AcuB C-terminal AC 23.8 99 0.0022 16.3 2.4 17 68-84 53-69 (72)
347 TIGR00007 phosphoribosylformim 23.8 2.3E+02 0.005 18.9 4.9 27 59-86 191-217 (230)
348 PRK10858 nitrogen regulatory p 23.7 1.8E+02 0.0038 17.7 3.7 29 7-36 66-96 (112)
349 COG3640 CooC CO dehydrogenase 23.6 2.1E+02 0.0046 20.3 4.4 70 13-87 120-191 (255)
350 PF10237 N6-adenineMlase: Prob 23.6 1.8E+02 0.0039 19.0 3.9 26 7-35 8-33 (162)
351 PF13523 Acetyltransf_8: Acety 23.5 97 0.0021 18.9 2.6 21 71-91 126-146 (152)
352 PF12760 Zn_Tnp_IS1595: Transp 23.4 67 0.0014 16.1 1.5 13 7-19 2-14 (46)
353 PF14258 DUF4350: Domain of un 23.4 75 0.0016 17.1 1.8 23 6-35 47-70 (70)
354 PLN02476 O-methyltransferase 23.3 2.9E+02 0.0062 19.8 7.5 74 5-96 201-275 (278)
355 PRK10475 23S rRNA pseudouridin 23.3 98 0.0021 22.2 2.8 28 60-90 180-207 (290)
356 PF00750 tRNA-synt_1d: tRNA sy 23.2 1.3E+02 0.0029 21.9 3.6 51 27-90 17-67 (354)
357 PF07647 SAM_2: SAM domain (St 22.9 1E+02 0.0022 16.1 2.3 16 67-82 4-19 (66)
358 PF15636 Tox-GHH: GHH signatur 22.7 61 0.0013 18.6 1.4 14 4-17 35-48 (79)
359 PF13319 DUF4090: Protein of u 22.5 1E+02 0.0022 17.9 2.2 26 60-85 52-77 (84)
360 PLN02589 caffeoyl-CoA O-methyl 22.5 1.4E+02 0.0031 20.8 3.5 32 5-40 163-194 (247)
361 KOG3201 Uncharacterized conser 22.4 80 0.0017 21.3 2.0 27 59-85 137-163 (201)
362 PF14826 FACT-Spt16_Nlob: FACT 22.2 63 0.0014 21.1 1.6 18 69-86 142-159 (163)
363 PF14566 PTPlike_phytase: Inos 22.0 1.9E+02 0.0041 18.3 3.7 28 4-34 103-130 (149)
364 KOG3010 Methyltransferase [Gen 22.0 1.3E+02 0.0028 21.5 3.1 25 11-37 115-139 (261)
365 cd06542 GH18_EndoS-like Endo-b 21.8 1.6E+02 0.0035 20.1 3.6 29 7-38 126-154 (255)
366 PRK04140 hypothetical protein; 21.7 94 0.002 22.7 2.5 31 66-96 3-34 (317)
367 PF11193 DUF2812: Protein of u 21.7 96 0.0021 18.5 2.2 21 65-85 49-69 (115)
368 PRK13809 orotate phosphoribosy 21.7 2.7E+02 0.0058 18.9 4.9 63 27-90 117-179 (206)
369 COG5379 BtaA S-adenosylmethion 21.5 1.2E+02 0.0025 22.6 2.9 29 4-35 337-366 (414)
370 COG0075 Serine-pyruvate aminot 21.5 2E+02 0.0043 21.7 4.2 30 63-92 113-143 (383)
371 PF03269 DUF268: Caenorhabditi 21.3 1.7E+02 0.0037 19.6 3.4 25 12-39 91-115 (177)
372 cd03421 SirA_like_N SirA_like_ 21.3 1.5E+02 0.0032 15.8 4.5 23 68-91 37-59 (67)
373 PF07796 DUF1638: Protein of u 21.2 1.5E+02 0.0033 19.0 3.2 34 2-37 6-39 (166)
374 PF03574 Peptidase_S48: Peptid 21.2 88 0.0019 19.9 2.0 21 3-23 14-34 (149)
375 PRK03341 arginine repressor; P 21.2 69 0.0015 21.1 1.6 23 63-85 26-48 (168)
376 PLN03155 cytochrome c oxidase 21.1 1.1E+02 0.0024 16.9 2.1 25 3-33 36-60 (63)
377 COG0072 PheT Phenylalanyl-tRNA 20.9 3.3E+02 0.0072 21.9 5.5 69 10-85 232-300 (650)
378 CHL00123 rps6 ribosomal protei 20.8 1.9E+02 0.0041 17.0 3.3 32 5-38 17-48 (97)
379 cd05831 Ribosomal_P1 Ribosomal 20.8 96 0.0021 18.7 2.0 27 60-86 11-37 (103)
380 PF01436 NHL: NHL repeat; Int 20.8 98 0.0021 13.6 1.7 10 27-36 11-20 (28)
381 PRK08366 vorA 2-ketoisovalerat 20.7 3.7E+02 0.008 20.1 5.5 50 29-79 312-370 (390)
382 KOG1661 Protein-L-isoaspartate 20.7 52 0.0011 23.0 0.9 21 11-34 172-192 (237)
383 PRK14702 insertion element IS2 20.6 1E+02 0.0022 21.5 2.5 26 60-85 157-182 (262)
384 COG3660 Predicted nucleoside-d 20.5 1.3E+02 0.0029 21.9 3.0 76 4-85 175-251 (329)
385 smart00115 CASc Caspase, inter 20.5 2.2E+02 0.0049 19.5 4.1 12 27-38 7-18 (241)
386 cd00692 ligninase Ligninase an 20.5 44 0.00094 24.5 0.6 30 66-95 147-176 (328)
387 PF12385 Peptidase_C70: Papain 20.5 2.7E+02 0.0059 18.5 4.5 23 64-86 93-115 (166)
388 cd05833 Ribosomal_P2 Ribosomal 20.5 81 0.0017 19.3 1.7 27 58-84 8-35 (109)
389 PLN02668 indole-3-acetate carb 20.3 3.9E+02 0.0084 20.2 7.5 73 12-87 217-308 (386)
390 PF14794 DUF4479: Domain of un 20.3 99 0.0021 17.5 1.9 18 67-84 48-68 (73)
391 KOG2972 Uncharacterized conser 20.2 89 0.0019 22.3 2.0 17 64-80 132-148 (276)
392 PRK12451 arginyl-tRNA syntheta 20.2 3.4E+02 0.0073 21.3 5.4 47 29-91 112-161 (562)
393 PLN02879 L-ascorbate peroxidas 20.2 58 0.0012 22.9 1.1 30 66-95 136-165 (251)
394 TIGR03156 GTP_HflX GTP-binding 20.1 1.2E+02 0.0027 22.1 2.9 22 66-87 16-37 (351)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.87 E-value=1.4e-22 Score=144.34 Aligned_cols=96 Identities=32% Similarity=0.595 Sum_probs=83.4
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC-CCCchhhhhhhhhhhhcccccC-ceecCHHHHHHHHHHc
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ-SQDKESMETQLCFDILMVSLFR-GKERSVDDWKKLFLAA 79 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~-~~~~~~~~~~~~~dl~ml~~~~-g~~rt~~e~~~ll~~a 79 (100)
|||||+|++|++||+||+++|+ |+|+|+|+|+++|+. ...+-.+.....+|+.|++.+. |++||.+||+.++.++
T Consensus 245 iLhdwtDedcvkiLknC~~sL~---~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~ 321 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLP---PGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEE 321 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCC---CCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhh
Confidence 7999999999999999999999 999999999999862 2221112344578999998886 9999999999999999
Q ss_pred CCceeEEEecCCcceEEEEeC
Q 040309 80 GFSHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 80 Gf~~~~v~~~~~~~~vie~~p 100 (100)
||.+.++...+..+++||+++
T Consensus 322 gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 322 GFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cCceeEEEeccCccchheeCC
Confidence 999999999988999999875
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.85 E-value=1.1e-21 Score=134.46 Aligned_cols=74 Identities=35% Similarity=0.735 Sum_probs=64.0
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCC--cEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHH
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEG--GKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFL 77 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pg--g~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~ 77 (100)
||||+|+|++|++||+++++||+ || |+|+|+|+++++.+..++.......+|++||+.++|++||.+||++||+
T Consensus 166 ~vLh~~~d~~~~~iL~~~~~al~---pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 166 HVLHDWSDEDCVKILRNAAAALK---PGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp SSGGGS-HHHHHHHHHHHHHHSE---ECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred hhhhhcchHHHHHHHHHHHHHhC---CCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 69999999999999999999999 89 9999999999998877533223368999999999999999999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.48 E-value=2e-13 Score=96.58 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=59.5
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhh-hhhhhhhcccccCceecCHHHHHHHHHHc
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET-QLCFDILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~-~~~~dl~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
+++|+|+++++.++|++++++|+ |||+++|.|.+.++...+ +.... ..+.++.|+... ..-++.+||.+||++|
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L~---pgG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAMR---SGGRLLILDMVIDDPENP-NFDYLSHYILGAGMPFSV-LGFKEQARYKEILESL 297 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhcC---CCCEEEEEEeccCCCCCc-hhhHHHHHHHHccccccc-ccCCCHHHHHHHHHHc
Confidence 57999999999999999999999 999999999988765432 11111 112222222211 2234579999999999
Q ss_pred CCceeEEE
Q 040309 80 GFSHYKIT 87 (100)
Q Consensus 80 Gf~~~~v~ 87 (100)
||+.++++
T Consensus 298 Gf~~v~~~ 305 (306)
T TIGR02716 298 GYKDVTMV 305 (306)
T ss_pred CCCeeEec
Confidence 99998875
No 4
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.81 E-value=9.9e-09 Score=69.85 Aligned_cols=72 Identities=26% Similarity=0.360 Sum_probs=57.0
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++-+.+|++.+++|++|+++|+ |+|.|+|.|++...+. ..+|- ..++-.||.+.|++||++|||
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~---~~G~IvvKEN~~~~~~---------~~~D~----~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALK---PNGVIVVKENVSSSGF---------DEFDE----EDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEE---EEEEEEEEEEEESSSE---------EEEET----TTTEEEEEHHHHHHHHHHCT-
T ss_pred hhccCCHHHHHHHHHHHHHhCc---CCcEEEEEecCCCCCC---------cccCC----ccCeeecCHHHHHHHHHHcCC
Confidence 4567899999999999999999 9999999999986432 12343 256899999999999999999
Q ss_pred ceeEEEec
Q 040309 82 SHYKITPI 89 (100)
Q Consensus 82 ~~~~v~~~ 89 (100)
++++...-
T Consensus 195 ~~v~~~~Q 202 (218)
T PF05891_consen 195 RLVKEEKQ 202 (218)
T ss_dssp EEEEEEE-
T ss_pred EEEEeccc
Confidence 99986544
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.68 E-value=8e-09 Score=70.75 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcc------------------cccC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV------------------SLFR 63 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml------------------~~~~ 63 (100)
++|.+++++..++|++++++|+ |||++++.|.+.+++....+. +..+.+. ....
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~Lk---pgG~l~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 202 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLN---PNGVLVLSEKFRFEDTKINHL-----LIDLHHQFKRANGYSELEISQKRTALENV 202 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcC---CCeEEEEeecccCCCHhHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 5788999889999999999999 999999999877654332111 1111110 0011
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEe
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
-+..|.+|+.+++++|||+.+++..
T Consensus 203 ~~~~s~~~~~~~l~~aGF~~~~~~~ 227 (239)
T TIGR00740 203 MRTDSIETHKARLKNVGFSHVELWF 227 (239)
T ss_pred CCCCCHHHHHHHHHHcCCchHHHHH
Confidence 2467999999999999999876543
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.48 E-value=7.5e-07 Score=62.12 Aligned_cols=90 Identities=24% Similarity=0.264 Sum_probs=58.6
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhc--c-------------cccCcee
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM--V-------------SLFRGKE 66 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~m--l-------------~~~~g~~ 66 (100)
++|+++|. .++|++++++|+ |||++++.|...++..-..+. ....++..+ + ..+-.+-
T Consensus 154 ~l~~~~d~--~~~l~ei~rvLk---pGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 154 GLRNVVDR--LKAMQEMYRVLK---PGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred ccccCCCH--HHHHHHHHHHcC---cCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 57888864 778999999999 999999999876543221111 011111100 0 0000234
Q ss_pred cCHHHHHHHHHHcCCceeEEEecCC-cceEEEE
Q 040309 67 RSVDDWKKLFLAAGFSHYKITPILG-VRSLIEA 98 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~~~~v~~~~~-~~~vie~ 98 (100)
+|.+|+.++++++||+.++.....+ ..++.-+
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 6999999999999999998877754 3444443
No 7
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.48 E-value=1.2e-06 Score=58.55 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=59.4
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccC-----------------c
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR-----------------G 64 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~-----------------g 64 (100)
++|+.++ ...+|+++++.|+ |||++++.+...+...... .........++...+ .
T Consensus 115 ~~~~~~~--~~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (223)
T TIGR01934 115 GLRNVTD--IQKALREMYRVLK---PGGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAYTYLPESIR 186 (223)
T ss_pred eeCCccc--HHHHHHHHHHHcC---CCcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHH
Confidence 3566665 5789999999999 9999999998655432110 111111111111000 1
Q ss_pred eecCHHHHHHHHHHcCCceeEEEecCC-cceEEEEeC
Q 040309 65 KERSVDDWKKLFLAAGFSHYKITPILG-VRSLIEAYP 100 (100)
Q Consensus 65 ~~rt~~e~~~ll~~aGf~~~~v~~~~~-~~~vie~~p 100 (100)
...+.++|..+|+++||+.+++.+..+ ...++++++
T Consensus 187 ~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 187 AFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 234889999999999999999988864 467777764
No 8
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.44 E-value=1.8e-06 Score=58.27 Aligned_cols=90 Identities=16% Similarity=0.273 Sum_probs=60.0
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhccc-----ccC------------c
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS-----LFR------------G 64 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~-----~~~------------g 64 (100)
++|++++ ...+|+++.+.|+ |||+++++|...++... .......+...++. ..+ .
T Consensus 130 ~l~~~~~--~~~~l~~~~~~L~---~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (239)
T PRK00216 130 GLRNVPD--IDKALREMYRVLK---PGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIR 201 (239)
T ss_pred ccccCCC--HHHHHHHHHHhcc---CCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHH
Confidence 5677776 4788999999999 99999999987654321 10111111000000 000 2
Q ss_pred eecCHHHHHHHHHHcCCceeEEEecC-CcceEEEEe
Q 040309 65 KERSVDDWKKLFLAAGFSHYKITPIL-GVRSLIEAY 99 (100)
Q Consensus 65 ~~rt~~e~~~ll~~aGf~~~~v~~~~-~~~~vie~~ 99 (100)
..++.++|.++|++|||+.+++.... +..+++.++
T Consensus 202 ~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 237 (239)
T PRK00216 202 AFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGY 237 (239)
T ss_pred hCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEe
Confidence 24588999999999999999998864 667888775
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.44 E-value=1.4e-06 Score=60.81 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=55.4
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|++++++..++|+++++.|+ |||++++.|...++...... ....... ...-...+.++|.++|++|||
T Consensus 126 ~l~h~~~~d~~~~l~~i~r~Lk---PGG~lvi~d~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~l~~aGF 195 (263)
T PTZ00098 126 AILHLSYADKKKLFEKCYKWLK---PNGILLITDYCADKIENWDE--EFKAYIK-----KRKYTLIPIQEYGDLIKSCNF 195 (263)
T ss_pred hHHhCCHHHHHHHHHHHHHHcC---CCcEEEEEEeccccccCcHH--HHHHHHH-----hcCCCCCCHHHHHHHHHHCCC
Confidence 3566787788999999999999 99999999987654322111 1111111 011233589999999999999
Q ss_pred ceeEEEecC
Q 040309 82 SHYKITPIL 90 (100)
Q Consensus 82 ~~~~v~~~~ 90 (100)
+.++.....
T Consensus 196 ~~v~~~d~~ 204 (263)
T PTZ00098 196 QNVVAKDIS 204 (263)
T ss_pred CeeeEEeCc
Confidence 999887653
No 10
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.39 E-value=2.8e-06 Score=59.16 Aligned_cols=76 Identities=16% Similarity=0.303 Sum_probs=55.6
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|.++|. .++++++++.|+ |||++++.|.+..... + .....++.++..+.+..++.++|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lk---pGG~l~i~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLK---PGGRFAISDVVLRGEL-P-----EEIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcC---CCcEEEEEEeeccCCC-C-----HHHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 56767664 578999999999 9999999998764421 1 11122333444445677899999999999999
Q ss_pred ceeEEEe
Q 040309 82 SHYKITP 88 (100)
Q Consensus 82 ~~~~v~~ 88 (100)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9988743
No 11
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.34 E-value=9.8e-07 Score=57.34 Aligned_cols=82 Identities=23% Similarity=0.216 Sum_probs=53.8
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhh-----h----------hcccccCcee
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD-----I----------LMVSLFRGKE 66 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~d-----l----------~ml~~~~g~~ 66 (100)
++|+|+|. .+.|++++++|+ |||+++|.|...+++.-.... ...... + ..+..+-..-
T Consensus 53 ~l~~~~d~--~~~l~ei~rvLk---pGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f 125 (160)
T PLN02232 53 GLRNVVDR--LRAMKEMYRVLK---PGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGY 125 (160)
T ss_pred hhhcCCCH--HHHHHHHHHHcC---cCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHC
Confidence 57888764 799999999999 999999999876543211000 000000 0 0000001234
Q ss_pred cCHHHHHHHHHHcCCceeEEEecC
Q 040309 67 RSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
.+.+|+.++|+++||+.++.....
T Consensus 126 ~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 126 LTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred cCHHHHHHHHHHcCCCcceEEECc
Confidence 589999999999999999877764
No 12
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.33 E-value=2.9e-06 Score=61.46 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=52.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|.|+|.+ ++|+++++.|+ |||++++.+.+.++... .....+..+. ..+.+||.++|+++||
T Consensus 187 ~L~~~~d~~--~~L~e~~rvLk---PGG~LvIi~~~~p~~~~------~r~~~~~~~~------~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 187 SIEYWPDPQ--RGIKEAYRVLK---IGGKACLIGPVHPTFWL------SRFFADVWML------FPKEEEYIEWFTKAGF 249 (340)
T ss_pred hhhhCCCHH--HHHHHHHHhcC---CCcEEEEEEecCcchhH------HHHhhhhhcc------CCCHHHHHHHHHHCCC
Confidence 578898874 68999999999 99999998766543211 1111222221 2589999999999999
Q ss_pred ceeEEEecC
Q 040309 82 SHYKITPIL 90 (100)
Q Consensus 82 ~~~~v~~~~ 90 (100)
+.+++....
T Consensus 250 ~~V~i~~i~ 258 (340)
T PLN02490 250 KDVKLKRIG 258 (340)
T ss_pred eEEEEEEcC
Confidence 999987654
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.29 E-value=3.1e-06 Score=53.77 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=53.4
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccc--cCceecCHHHHHHHHHH
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL--FRGKERSVDDWKKLFLA 78 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~--~~g~~rt~~e~~~ll~~ 78 (100)
++||+.+| ..++|+++++.|+ |||.+++.+...+.. . ........+... .....+|.++|+.++++
T Consensus 86 ~~l~~~~d--~~~~l~~l~~~Lk---pgG~l~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 153 (161)
T PF13489_consen 86 DVLEHLPD--PEEFLKELSRLLK---PGGYLVISDPNRDDP-S------PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQ 153 (161)
T ss_dssp SSGGGSSH--HHHHHHHHHHCEE---EEEEEEEEEEBTTSH-H------HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHH
T ss_pred HHHhhccc--HHHHHHHHHHhcC---CCCEEEEEEcCCcch-h------hhHHHhcCCcCccCceeccCCHHHHHHHHHH
Confidence 47888886 6899999999999 999999999776431 0 111111122121 34678899999999999
Q ss_pred cCCceeE
Q 040309 79 AGFSHYK 85 (100)
Q Consensus 79 aGf~~~~ 85 (100)
+||++++
T Consensus 154 ~G~~iv~ 160 (161)
T PF13489_consen 154 AGFEIVE 160 (161)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 9999875
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.22 E-value=1e-05 Score=58.08 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=52.0
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhhhhhhhhhcccccCceecCHHHHHHHHHHc
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~--~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
+||+..|. ..+|++++++|+ |||++++-+.+.+...... |...+..+... -..+|.+++.+||++|
T Consensus 198 vl~H~~dp--~~~L~~l~~~Lk---pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~-------~~lps~~~l~~~L~~a 265 (322)
T PRK15068 198 VLYHRRSP--LDHLKQLKDQLV---PGGELVLETLVIDGDENTVLVPGDRYAKMRNV-------YFIPSVPALKNWLERA 265 (322)
T ss_pred hhhccCCH--HHHHHHHHHhcC---CCcEEEEEEEEecCCCccccCchhHHhcCccc-------eeCCCHHHHHHHHHHc
Confidence 67777764 678999999999 9999988777666543321 11011111011 1236999999999999
Q ss_pred CCceeEEEec
Q 040309 80 GFSHYKITPI 89 (100)
Q Consensus 80 Gf~~~~v~~~ 89 (100)
||+.+++...
T Consensus 266 GF~~i~~~~~ 275 (322)
T PRK15068 266 GFKDVRIVDV 275 (322)
T ss_pred CCceEEEEeC
Confidence 9999998754
No 15
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.21 E-value=1.2e-05 Score=57.69 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=52.5
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhhhhhhhhhcccccCceecCHHHHHHHHHHc
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~--~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
+||+++|. ...|++++++|+ |||+|++.+.+++...... |...+..+.... .-.|.+++.+||++|
T Consensus 197 vL~H~~dp--~~~L~el~r~Lk---pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~-------flpS~~~L~~~L~~a 264 (314)
T TIGR00452 197 VLYHRKSP--LEHLKQLKHQLV---IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVY-------FIPSVSALKNWLEKV 264 (314)
T ss_pred hhhccCCH--HHHHHHHHHhcC---CCCEEEEEEEEecCccccccCchHHHHhccccc-------cCCCHHHHHHHHHHC
Confidence 67788765 679999999999 9999999888776433210 110111111111 124899999999999
Q ss_pred CCceeEEEec
Q 040309 80 GFSHYKITPI 89 (100)
Q Consensus 80 Gf~~~~v~~~ 89 (100)
||+.+++...
T Consensus 265 GF~~V~i~~~ 274 (314)
T TIGR00452 265 GFENFRILDV 274 (314)
T ss_pred CCeEEEEEec
Confidence 9999998754
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.20 E-value=1.2e-05 Score=54.56 Aligned_cols=91 Identities=19% Similarity=0.325 Sum_probs=57.6
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhh-hhhhhhhc----------------ccccCc
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET-QLCFDILM----------------VSLFRG 64 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~-~~~~dl~m----------------l~~~~g 64 (100)
.+|++++. .++|+++.+.|+ |||++++.|...+... .+... ...+...+ +.....
T Consensus 123 ~l~~~~~~--~~~l~~~~~~Lk---~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (231)
T TIGR02752 123 GLRNVPDY--MQVLREMYRVVK---PGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTR 194 (231)
T ss_pred ccccCCCH--HHHHHHHHHHcC---cCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHH
Confidence 35666664 589999999999 9999999886543221 11000 00011000 000112
Q ss_pred eecCHHHHHHHHHHcCCceeEEEecC-CcceEEEEeC
Q 040309 65 KERSVDDWKKLFLAAGFSHYKITPIL-GVRSLIEAYP 100 (100)
Q Consensus 65 ~~rt~~e~~~ll~~aGf~~~~v~~~~-~~~~vie~~p 100 (100)
+-.|.+|++++|++|||+.+++.... |..+++.+++
T Consensus 195 ~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 195 DFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 33578999999999999999998876 6667766653
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.03 E-value=1.5e-05 Score=55.02 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=54.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchh-hh----hhhhhhhh------cc-cccC-ceecC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKES-ME----TQLCFDIL------MV-SLFR-GKERS 68 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~-~~----~~~~~dl~------ml-~~~~-g~~rt 68 (100)
++|..++++..+++++++++|+ |||.+++.|.+..++....+. .. ......+. +. ...+ -..-|
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~Lk---pGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLN---PGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcC---CCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 5788888888999999999999 999999999876654432221 00 00000000 00 0011 22458
Q ss_pred HHHHHHHHHHcCCceeEE
Q 040309 69 VDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 69 ~~e~~~ll~~aGf~~~~v 86 (100)
.++..+||++|||+.+..
T Consensus 211 ~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 211 VETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHHcCchhHHH
Confidence 999999999999997665
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.03 E-value=3.9e-05 Score=57.37 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=53.1
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|+++|. .++|++++++|+ |||+++|.|.......... .....+ ...+...++.++|.+++++|||
T Consensus 341 ~l~h~~d~--~~~l~~~~r~Lk---pgG~l~i~~~~~~~~~~~~---~~~~~~-----~~~g~~~~~~~~~~~~l~~aGF 407 (475)
T PLN02336 341 TILHIQDK--PALFRSFFKWLK---PGGKVLISDYCRSPGTPSP---EFAEYI-----KQRGYDLHDVQAYGQMLKDAGF 407 (475)
T ss_pred cccccCCH--HHHHHHHHHHcC---CCeEEEEEEeccCCCCCcH---HHHHHH-----HhcCCCCCCHHHHHHHHHHCCC
Confidence 56777764 689999999999 9999999998765432221 111111 1124467899999999999999
Q ss_pred ceeEEEe
Q 040309 82 SHYKITP 88 (100)
Q Consensus 82 ~~~~v~~ 88 (100)
+++.+..
T Consensus 408 ~~i~~~d 414 (475)
T PLN02336 408 DDVIAED 414 (475)
T ss_pred eeeeeec
Confidence 9987654
No 19
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.94 E-value=9.9e-05 Score=50.06 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=72.0
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhccccc-CceecCHHHHHHHHHHc
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF-RGKERSVDDWKKLFLAA 79 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~-~g~~rt~~e~~~ll~~a 79 (100)
|++|-=+-+.+..+++.+.+.|+ +||.|+++-...-++.-.+ +....||-.+-... ....|..++..++.+++
T Consensus 110 N~lHI~p~~~~~~lf~~a~~~L~---~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 110 NMLHISPWSAVEGLFAGAARLLK---PGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred hHHHhcCHHHHHHHHHHHHHhCC---CCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 67888899999999999999999 9999999998876654332 23445676554433 48899999999999999
Q ss_pred CCceeEEEecC-CcceEEE
Q 040309 80 GFSHYKITPIL-GVRSLIE 97 (100)
Q Consensus 80 Gf~~~~v~~~~-~~~~vie 97 (100)
||+..+++..+ +...+|.
T Consensus 184 GL~l~~~~~MPANN~~Lvf 202 (204)
T PF06080_consen 184 GLELEEDIDMPANNLLLVF 202 (204)
T ss_pred CCccCcccccCCCCeEEEE
Confidence 99999998876 4565553
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=97.91 E-value=4.8e-05 Score=54.94 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=51.3
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCC-chhh-hhhhhhhhhcccccCceecCHHHHHHHHHHc
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQD-KESM-ETQLCFDILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~-~~~~-~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
.+|+++|. .++|++++++|+ |||+++|.+......... .... .....++-.......-...+.++|.++++++
T Consensus 195 ~~~h~~d~--~~~l~e~~rvLk---pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a 269 (340)
T PLN02244 195 SGEHMPDK--RKFVQELARVAA---PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL 269 (340)
T ss_pred chhccCCH--HHHHHHHHHHcC---CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence 46788774 689999999999 999999998654321111 0000 0011111000000011235899999999999
Q ss_pred CCceeEEEec
Q 040309 80 GFSHYKITPI 89 (100)
Q Consensus 80 Gf~~~~v~~~ 89 (100)
||+.+++...
T Consensus 270 Gf~~v~~~d~ 279 (340)
T PLN02244 270 GLQDIKTEDW 279 (340)
T ss_pred CCCeeEeeeC
Confidence 9999988654
No 21
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.89 E-value=4.6e-06 Score=57.46 Aligned_cols=89 Identities=18% Similarity=0.331 Sum_probs=29.5
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhh----------------hhcccccCce
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD----------------ILMVSLFRGK 65 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~d----------------l~ml~~~~g~ 65 (100)
.||+.+|. .+.|++++++|+ |||+++|+|...|+.+.-... +...+. ...|..+--+
T Consensus 125 glrn~~d~--~~~l~E~~RVLk---PGG~l~ile~~~p~~~~~~~~--~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLK---PGGRLVILEFSKPRNPLLRAL--YKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEE---EEEEEEEEEEEB-SSHHHHHH--HHH-----------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcC---CCeEEEEeeccCCCCchhhce--eeeeeccccccccccccccccccccccccccc
Confidence 47888885 568999999999 999999999988764311000 000000 1111111123
Q ss_pred ecCHHHHHHHHHHcCCceeEEEecC-CcceEEE
Q 040309 66 ERSVDDWKKLFLAAGFSHYKITPIL-GVRSLIE 97 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~v~~~~-~~~~vie 97 (100)
-.+.+|+.++++++||+.++..+.. |..++.-
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~ 230 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHV 230 (233)
T ss_dssp ---------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 3478999999999999999887764 3344433
No 22
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.80 E-value=0.00013 Score=49.28 Aligned_cols=71 Identities=13% Similarity=0.277 Sum_probs=50.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|+++| -..+|+++++.|+ |||++++.+...+. .... .. + .......|.++|.++++++||
T Consensus 76 ~l~~~~~--~~~~l~~~~~~Lk---pgG~l~i~~~~~~~-~~~~---~~----~-----~~~~~~~s~~~~~~~l~~~Gf 137 (224)
T smart00828 76 VIHHIKD--KMDLFSNISRHLK---DGGHLVLADFIANL-LSAI---EH----E-----ETTSYLVTREEWAELLARNNL 137 (224)
T ss_pred HHHhCCC--HHHHHHHHHHHcC---CCCEEEEEEccccc-Cccc---cc----c-----ccccccCCHHHHHHHHHHCCC
Confidence 4677766 3689999999999 99999999975432 1110 00 0 001124588999999999999
Q ss_pred ceeEEEecC
Q 040309 82 SHYKITPIL 90 (100)
Q Consensus 82 ~~~~v~~~~ 90 (100)
++++.....
T Consensus 138 ~~~~~~~~~ 146 (224)
T smart00828 138 RVVEGVDAS 146 (224)
T ss_pred eEEEeEECc
Confidence 999887653
No 23
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.78 E-value=0.00025 Score=50.45 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=26.8
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEE
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 33 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli 33 (100)
.+|+++++++.++|++++++|+ |||+++|
T Consensus 147 ~~~~~~~~e~~~~L~~i~~~L~---pgG~~li 175 (301)
T TIGR03438 147 TIGNFTPEEAVAFLRRIRQLLG---PGGGLLI 175 (301)
T ss_pred cccCCCHHHHHHHHHHHHHhcC---CCCEEEE
Confidence 5788999999999999999999 9999886
No 24
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.69 E-value=0.00034 Score=48.53 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=53.6
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhh------------------cccccC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL------------------MVSLFR 63 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~------------------ml~~~~ 63 (100)
-||+.+| -.+.|++++++|+ |||+++|.|.-.|..+.... ....+.+. .+..+.
T Consensus 128 glrnv~d--~~~aL~E~~RVlK---pgG~~~vle~~~p~~~~~~~---~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi 199 (238)
T COG2226 128 GLRNVTD--IDKALKEMYRVLK---PGGRLLVLEFSKPDNPVLRK---AYILYYFKYVLPLIGKLVAKDAEAYEYLAESI 199 (238)
T ss_pred hhhcCCC--HHHHHHHHHHhhc---CCeEEEEEEcCCCCchhhHH---HHHHHHHHhHhhhhceeeecChHHHHHHHHHH
Confidence 3677776 5889999999999 99999999988876543311 11111111 111112
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEec
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
-+.-+.+++..+++++||+.+.-...
T Consensus 200 ~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 200 RRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HhCCCHHHHHHHHHhcCceEEeeEee
Confidence 22347889999999999998884444
No 25
>PRK04266 fibrillarin; Provisional
Probab=97.61 E-value=0.00047 Score=47.34 Aligned_cols=66 Identities=8% Similarity=0.168 Sum_probs=43.7
Q ss_pred ccccCChH-HHHHHHHHHHHhCCCCCCCcEEEEE-eeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHc
Q 040309 2 ILHNWNDE-ESVKLLKKCKEAIPSKDEGGKVIII-DMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 2 vlHdw~d~-~~~~iL~~~~~al~~~~pgg~lli~-e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
|+|+.++. +...+|+++++.|+ |||+++|. ..- +-+...+ . .|..++..++++++
T Consensus 145 i~~d~~~p~~~~~~L~~~~r~LK---pGG~lvI~v~~~-~~d~~~~------------------~-~~~~~~~~~~l~~a 201 (226)
T PRK04266 145 IYQDVAQPNQAEIAIDNAEFFLK---DGGYLLLAIKAR-SIDVTKD------------------P-KEIFKEEIRKLEEG 201 (226)
T ss_pred EEECCCChhHHHHHHHHHHHhcC---CCcEEEEEEecc-cccCcCC------------------H-HHHHHHHHHHHHHc
Confidence 56777654 34567899999999 99999994 220 0000000 0 12235567999999
Q ss_pred CCceeEEEecC
Q 040309 80 GFSHYKITPIL 90 (100)
Q Consensus 80 Gf~~~~v~~~~ 90 (100)
||+.+++..+.
T Consensus 202 GF~~i~~~~l~ 212 (226)
T PRK04266 202 GFEILEVVDLE 212 (226)
T ss_pred CCeEEEEEcCC
Confidence 99999988764
No 26
>PRK08317 hypothetical protein; Provisional
Probab=97.60 E-value=0.00035 Score=46.88 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=48.0
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchh-hhhhhhhhhhcccccCceecCHHHHHHHHHHcC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKES-METQLCFDILMVSLFRGKERSVDDWKKLFLAAG 80 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~-~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aG 80 (100)
++|+++|. ..+++++++.|+ |||++++.+.........++. ......... +.......++..+|.++|+++|
T Consensus 96 ~~~~~~~~--~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~aG 168 (241)
T PRK08317 96 VLQHLEDP--ARALAEIARVLR---PGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WSDHFADPWLGRRLPGLFREAG 168 (241)
T ss_pred hhhccCCH--HHHHHHHHHHhc---CCcEEEEEecCCCceeecCCChHHHHHHHHH--HHhcCCCCcHHHHHHHHHHHcC
Confidence 56777764 678999999999 999999988532211000000 001111111 1111233456779999999999
Q ss_pred CceeEEE
Q 040309 81 FSHYKIT 87 (100)
Q Consensus 81 f~~~~v~ 87 (100)
|+.+++.
T Consensus 169 f~~~~~~ 175 (241)
T PRK08317 169 LTDIEVE 175 (241)
T ss_pred CCceeEE
Confidence 9987664
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.59 E-value=0.0002 Score=51.61 Aligned_cols=76 Identities=7% Similarity=0.076 Sum_probs=49.6
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhh-hh-hhcccccC----ceecCHHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLC-FD-ILMVSLFR----GKERSVDDWKKL 75 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~-~d-l~ml~~~~----g~~rt~~e~~~l 75 (100)
+||++.|. ..+|+++++.|+ |||+++|...... ...+ ..... .. +.-++..+ .+-+|.+|+..+
T Consensus 207 vLeHv~d~--~~~L~~l~r~Lk---PGG~liist~nr~----~~~~-~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~l 276 (322)
T PLN02396 207 VIEHVANP--AEFCKSLSALTI---PNGATVLSTINRT----MRAY-ASTIVGAEYILRWLPKGTHQWSSFVTPEELSMI 276 (322)
T ss_pred HHHhcCCH--HHHHHHHHHHcC---CCcEEEEEECCcC----HHHH-HHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHH
Confidence 68888876 579999999999 9999999864321 0000 00000 00 00011111 346799999999
Q ss_pred HHHcCCceeEEE
Q 040309 76 FLAAGFSHYKIT 87 (100)
Q Consensus 76 l~~aGf~~~~v~ 87 (100)
|+++||+++++.
T Consensus 277 L~~aGf~i~~~~ 288 (322)
T PLN02396 277 LQRASVDVKEMA 288 (322)
T ss_pred HHHcCCeEEEEe
Confidence 999999999884
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.56 E-value=0.00029 Score=52.73 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=52.5
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|.++|++..++|+++++.|+ |||++++.|......... . + .......|+..+|.++|.++||
T Consensus 112 ~l~~l~~~~~~~~l~~~~r~Lk---~gG~l~~~d~~~~~~~~~------~---~----~~~~~~~~~~~~~~~~f~~~~~ 175 (475)
T PLN02336 112 LLMYLSDKEVENLAERMVKWLK---VGGYIFFRESCFHQSGDS------K---R----KNNPTHYREPRFYTKVFKECHT 175 (475)
T ss_pred hHHhCCHHHHHHHHHHHHHhcC---CCeEEEEEeccCCCCCcc------c---c----cCCCCeecChHHHHHHHHHhee
Confidence 5788899889999999999999 999999999875433211 0 1 0123556789999999999998
Q ss_pred ceeE
Q 040309 82 SHYK 85 (100)
Q Consensus 82 ~~~~ 85 (100)
....
T Consensus 176 ~~~~ 179 (475)
T PLN02336 176 RDED 179 (475)
T ss_pred ccCC
Confidence 8764
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.50 E-value=0.00019 Score=49.62 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=48.7
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh-hhhhh-hhhh---cccccCceecCHHHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM-ETQLC-FDIL---MVSLFRGKERSVDDWKKLF 76 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~-~~~~~-~dl~---ml~~~~g~~rt~~e~~~ll 76 (100)
+||.++|. .++|+++++.|+ |||+++|............... ..... ..+. -.........+.+++.++|
T Consensus 121 vl~~~~~~--~~~l~~~~~~Lk---pgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLR---PGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcC---CCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 56767665 578999999999 9999998765432100000000 00000 0000 0001112346889999999
Q ss_pred HHcCCceeEEEecC
Q 040309 77 LAAGFSHYKITPIL 90 (100)
Q Consensus 77 ~~aGf~~~~v~~~~ 90 (100)
+++||+++.+.-+.
T Consensus 196 ~~aGf~~~~~~gi~ 209 (255)
T PRK11036 196 EEAGWQIMGKTGVR 209 (255)
T ss_pred HHCCCeEeeeeeEE
Confidence 99999998765443
No 30
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.34 E-value=9.8e-05 Score=51.94 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=45.8
Q ss_pred CccccCCh-HHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHc
Q 040309 1 GILHNWND-EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 1 ~vlHdw~d-~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
.|||.-+| ++...+++..+++|. |||.|.|.....+.. +. ......++.--....+..||.+|+.++|.
T Consensus 158 ~vLh~v~D~~dp~~iv~~l~d~la---pGS~L~ish~t~d~~--p~---~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 158 AVLHFVPDDDDPAGIVARLRDALA---PGSYLAISHATDDGA--PE---RAEALEAVYAQAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp T-GGGS-CGCTHHHHHHHHHCCS----TT-EEEEEEEB-TTS--HH---HHHHHHHHHHHCCS----B-HHHHHHCCT--
T ss_pred eeeccCCCccCHHHHHHHHHHhCC---CCceEEEEecCCCCC--HH---HHHHHHHHHHcCCCCceecCHHHHHHHcC--
Confidence 37899988 889999999999999 899999988765422 11 12223333323344589999999999998
Q ss_pred CCceeE
Q 040309 80 GFSHYK 85 (100)
Q Consensus 80 Gf~~~~ 85 (100)
||++++
T Consensus 228 g~elve 233 (267)
T PF04672_consen 228 GLELVE 233 (267)
T ss_dssp TSEE-T
T ss_pred CCccCC
Confidence 888764
No 31
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.13 E-value=0.0024 Score=44.14 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=44.6
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc-hhh-hhh--hhhhhhc--ccc-cCceecCHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK-ESM-ETQ--LCFDILM--VSL-FRGKERSVDDWKK 74 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~-~~~-~~~--~~~dl~m--l~~-~~g~~rt~~e~~~ 74 (100)
++|..+|. .++|++++++|+ |||++++.... ....+. ... ... ..+.-.+ +.. .+....+.++|.+
T Consensus 98 ~l~~~~d~--~~~l~~~~~~Lk---pgG~l~~~~~~--~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 98 ALQWVPEH--ADLLVRWVDELA---PGSWIAVQVPG--NFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred hhhhCCCH--HHHHHHHHHhCC---CCcEEEEEcCC--CcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 56766664 789999999999 99999986321 111110 000 000 0011000 001 1234569999999
Q ss_pred HHHHcCCceeE
Q 040309 75 LFLAAGFSHYK 85 (100)
Q Consensus 75 ll~~aGf~~~~ 85 (100)
+|++|||++..
T Consensus 171 ~l~~aGf~v~~ 181 (255)
T PRK14103 171 LLTDAGCKVDA 181 (255)
T ss_pred HHHhCCCeEEE
Confidence 99999998543
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.10 E-value=0.0045 Score=41.37 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=46.8
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|.+++++..+++++++++|+ |||++++++.+.+++... + . . .-...+.+|+.++++ ||
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk---pgG~~~~~~~~~~~~~~~-~---~----~-------~~~~~~~~el~~~~~--~~ 163 (197)
T PRK11207 104 VLMFLEAKTIPGLIANMQRCTK---PGGYNLIVAAMDTADYPC-T---V----G-------FPFAFKEGELRRYYE--GW 163 (197)
T ss_pred chhhCCHHHHHHHHHHHHHHcC---CCcEEEEEEEecCCCCCC-C---C----C-------CCCccCHHHHHHHhC--CC
Confidence 5687888889999999999999 999988877655432210 0 0 0 012257888888887 89
Q ss_pred ceeEE
Q 040309 82 SHYKI 86 (100)
Q Consensus 82 ~~~~v 86 (100)
+++..
T Consensus 164 ~~~~~ 168 (197)
T PRK11207 164 EMVKY 168 (197)
T ss_pred eEEEe
Confidence 88765
No 33
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0026 Score=43.63 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEE
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v 86 (100)
|-++.++.|+++++.|+ |||+++.+|++..+.+.-... .....+-.--..+.|-..|.+-| +.|++|.|+..+.
T Consensus 157 Sve~~~k~L~e~~rlLR---pgG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f~~~~~ 230 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLR---PGGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLESDGCVLTRDTG-ELLEDAEFSIDSC 230 (252)
T ss_pred ccCCHHHHHHHHHHhcC---CCcEEEEEecccccchHHHHH--HHHHhchhhheeccceEEehhHH-HHhhhcccccchh
Confidence 34567999999999999 999999999998765532110 01112211112344666777555 5778899999887
Q ss_pred EecCC--cceEEEE
Q 040309 87 TPILG--VRSLIEA 98 (100)
Q Consensus 87 ~~~~~--~~~vie~ 98 (100)
.+... .+.+|+.
T Consensus 231 kr~~~~ttw~~V~~ 244 (252)
T KOG4300|consen 231 KRFNFGTTWVIVEP 244 (252)
T ss_pred hcccCCceEEEEec
Confidence 66543 3444543
No 34
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.97 E-value=0.0039 Score=44.88 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=48.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccc----cCceecCHHHHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL----FRGKERSVDDWKKLFL 77 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~----~~g~~rt~~e~~~ll~ 77 (100)
++|+++++...++++++.+ +. + |+++|.. .+...... .....-.+ +.. .....++.+|++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~---~-g~liIs~--~p~~~~~~---~l~~~g~~--~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LA---E-KRLIISF--APKTLYYD---ILKRIGEL--FPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hc---C-CEEEEEe--CCcchHHH---HHHHHHhh--cCCCCcCceeeeCCHHHHHHHHH
Confidence 5788999888889988875 45 3 4555422 22211100 00001011 110 0122348999999999
Q ss_pred HcCCceeEEEecCCc--c-eEEEEeC
Q 040309 78 AAGFSHYKITPILGV--R-SLIEAYP 100 (100)
Q Consensus 78 ~aGf~~~~v~~~~~~--~-~vie~~p 100 (100)
++||++.+..-..+. + -++|+.|
T Consensus 289 ~AGf~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 289 KAGWKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred HCCCEEEEEEEeecceeHHhhhhhcc
Confidence 999999876544332 2 3555543
No 35
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.97 E-value=0.0039 Score=42.27 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=45.3
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh-h---hhhhhhhhccccc-CceecCHHHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM-E---TQLCFDILMVSLF-RGKERSVDDWKKLF 76 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~-~---~~~~~dl~ml~~~-~g~~rt~~e~~~ll 76 (100)
++++.++. ..+|+++.+.|+ |||++++...- ....... . ....+...-.... .++..+.++|.+++
T Consensus 123 ~l~~~~~~--~~~l~~~~~~L~---~gG~l~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (233)
T PRK05134 123 MLEHVPDP--ASFVRACAKLVK---PGGLVFFSTLN----RNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL 193 (233)
T ss_pred HhhccCCH--HHHHHHHHHHcC---CCcEEEEEecC----CChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH
Confidence 35555553 578999999999 89998876532 1110000 0 0001111000001 13445889999999
Q ss_pred HHcCCceeEEE
Q 040309 77 LAAGFSHYKIT 87 (100)
Q Consensus 77 ~~aGf~~~~v~ 87 (100)
+++||++++..
T Consensus 194 ~~~Gf~~v~~~ 204 (233)
T PRK05134 194 RQAGLEVQDIT 204 (233)
T ss_pred HHCCCeEeeee
Confidence 99999998775
No 36
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.96 E-value=0.0043 Score=43.78 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=49.7
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhh---------------hhhcccccCceec
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF---------------DILMVSLFRGKER 67 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~---------------dl~ml~~~~g~~r 67 (100)
+.+|+| ..+.|+.++++|+ ||||+.+.|.---++..-..+ ..+..+ ..+.|+.+=-+--
T Consensus 187 IRN~th--~~k~l~EAYRVLK---pGGrf~cLeFskv~~~~l~~f-y~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp 260 (296)
T KOG1540|consen 187 IRNVTH--IQKALREAYRVLK---PGGRFSCLEFSKVENEPLKWF-YDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFP 260 (296)
T ss_pred eecCCC--HHHHHHHHHHhcC---CCcEEEEEEccccccHHHHHH-HHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCC
Confidence 356777 4789999999999 999999999754332111000 001111 1222322223444
Q ss_pred CHHHHHHHHHHcCCceeE
Q 040309 68 SVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~ 85 (100)
+.+|+..+.++|||..+.
T Consensus 261 ~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 261 PQEEFASMIEDAGFSSVN 278 (296)
T ss_pred CHHHHHHHHHHcCCcccc
Confidence 889999999999999987
No 37
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.95 E-value=0.0029 Score=42.48 Aligned_cols=75 Identities=11% Similarity=0.161 Sum_probs=45.6
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcc----cc-c--CceecCHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV----SL-F--RGKERSVDDWKK 74 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml----~~-~--~g~~rt~~e~~~ 74 (100)
++|...+. ..+|+++++.|+ |||.+++.+...+ . . +. .....+-.++ .. . .....+..+|.+
T Consensus 121 ~l~~~~~~--~~~l~~~~~~L~---~gG~l~i~~~~~~--~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (224)
T TIGR01983 121 VLEHVPDP--QAFIRACAQLLK---PGGILFFSTINRT--P-K-SY--LLAIVGAEYILRIVPKGTHDWEKFIKPSELTS 189 (224)
T ss_pred HHHhCCCH--HHHHHHHHHhcC---CCcEEEEEecCCC--c-h-HH--HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHH
Confidence 35566554 579999999999 8999988754211 1 0 00 0111110111 00 0 123458899999
Q ss_pred HHHHcCCceeEEE
Q 040309 75 LFLAAGFSHYKIT 87 (100)
Q Consensus 75 ll~~aGf~~~~v~ 87 (100)
+++++||+++++.
T Consensus 190 ~l~~~G~~i~~~~ 202 (224)
T TIGR01983 190 WLESAGLRVKDVK 202 (224)
T ss_pred HHHHcCCeeeeee
Confidence 9999999998875
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.90 E-value=0.0072 Score=40.32 Aligned_cols=66 Identities=8% Similarity=0.089 Sum_probs=46.5
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|.+++++..+++++++++|+ |||+++|++....+....++ . .....+.+|..++|+ +|
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~Lk---pgG~lli~~~~~~~~~~~~~--------~-------~~~~~~~~el~~~f~--~~ 162 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHTR---PGGYNLIVAAMDTADYPCHM--------P-------FSFTFKEDELRQYYA--DW 162 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHhC---CCcEEEEEEecccCCCCCCC--------C-------cCccCCHHHHHHHhC--CC
Confidence 5788888888999999999999 99998888765433211100 0 012457888888886 57
Q ss_pred ceeEEE
Q 040309 82 SHYKIT 87 (100)
Q Consensus 82 ~~~~v~ 87 (100)
++....
T Consensus 163 ~~~~~~ 168 (195)
T TIGR00477 163 ELLKYN 168 (195)
T ss_pred eEEEee
Confidence 777665
No 39
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.78 E-value=0.011 Score=39.78 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=46.9
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhc-c-cccCceecCHHHHHHHHHHc
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM-V-SLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~m-l-~~~~g~~rt~~e~~~ll~~a 79 (100)
++|+|++++..++++++.+.++ ++.++.. .+..... . .........- . -.......+.++|.++++++
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~----~~~~i~~---~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTR----GSLIFTF---APYTPLL-A--LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAA 205 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcC----CeEEEEE---CCccHHH-H--HHHHhccccCCccCCCCccccCHHHHHHHHHHC
Confidence 5788999999999999988655 3333332 1211100 0 0000000000 0 01123456899999999999
Q ss_pred CCceeEEEecC
Q 040309 80 GFSHYKITPIL 90 (100)
Q Consensus 80 Gf~~~~v~~~~ 90 (100)
||++.++.+..
T Consensus 206 Gf~~~~~~~~~ 216 (230)
T PRK07580 206 GFKVVRTERIS 216 (230)
T ss_pred CCceEeeeecc
Confidence 99999987764
No 40
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.72 E-value=0.0032 Score=44.40 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=51.8
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhh-hhcccccCceecCHHHHHHHHHHcCC
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD-ILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~d-l~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
+.+.+++.-.++++++.+.|+ |||++++...+.++..... ......+ +.--+..+|..-+..++...++++||
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~Lk---pgG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l 210 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLK---PGGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGL 210 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSE---TTEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-
T ss_pred hhhcChhHHHHHHHHHHHhcC---CCcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCE
Confidence 445566777899999999999 9999999887775432110 0000001 11123467888899999999999999
Q ss_pred ceeEEEec
Q 040309 82 SHYKITPI 89 (100)
Q Consensus 82 ~~~~v~~~ 89 (100)
++..+...
T Consensus 211 ~v~~~~~~ 218 (273)
T PF02353_consen 211 EVEDVENL 218 (273)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 99988655
No 41
>PRK06202 hypothetical protein; Provisional
Probab=96.57 E-value=0.0091 Score=40.62 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhh---hcccccC-----ceecCHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI---LMVSLFR-----GKERSVDDWK 73 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl---~ml~~~~-----g~~rt~~e~~ 73 (100)
+||+.+|++..++|+++++.++ |.++|.|...+.. .+.......-. ..+.... -+-+|.+|+.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRL----AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHH----HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 7899999988999999999877 5666666554310 01000000000 0000011 2456999999
Q ss_pred HHHHHcCCceeEEEec
Q 040309 74 KLFLAAGFSHYKITPI 89 (100)
Q Consensus 74 ~ll~~aGf~~~~v~~~ 89 (100)
+++++ ||++...++.
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9999887765
No 42
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.47 E-value=0.016 Score=41.77 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~--~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
...|+.++++|+ |||.|++=-.+++.+.... |..+++.+.++ =-.=|.+-...|++++||+.++++..
T Consensus 199 l~~L~~Lk~~L~---~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv-------~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 199 LDHLKQLKDSLR---PGGELVLETLVIDGDENTVLVPEDRYAKMRNV-------WFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHHHHhhC---CCCEEEEEEeeecCCCceEEccCCcccCCCce-------EEeCCHHHHHHHHHHcCCceEEEecC
Confidence 678888999999 8888776666666543320 11111111111 11238899999999999999998754
No 43
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.46 E-value=0.0067 Score=42.38 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=54.5
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCce---ecCHHHHHHHHHHc
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGK---ERSVDDWKKLFLAA 79 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~---~rt~~e~~~ll~~a 79 (100)
|---+.++-...++++++.++ |||.|+..|+-.-+-.... + .....++.+..+-..|. --+.++...||.+|
T Consensus 154 LSAi~pek~~~a~~nl~~llK---PGG~llfrDYg~~DlaqlR-F-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLK---PGGSLLFRDYGRYDLAQLR-F-KKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EeccChHHHHHHHHHHHHHhC---CCcEEEEeecccchHHHHh-c-cCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 344567788899999999999 9999999998765422110 0 11234444444433232 24999999999999
Q ss_pred CCceeEE
Q 040309 80 GFSHYKI 86 (100)
Q Consensus 80 Gf~~~~v 86 (100)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9998775
No 44
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.22 E-value=0.011 Score=39.92 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=46.1
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhccc---ccCceecCHHHHHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS---LFRGKERSVDDWKKLFLA 78 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~---~~~g~~rt~~e~~~ll~~ 78 (100)
++|.+++++..++++++++.++ ++ .++.+ .+... .. .....+.-.... ...-..++.+++.+++++
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~---~~-~~i~~---~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 196 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTK---ER-VIFTF---APKTA---WL-AFLKMIGELFPGSSRATSAYLHPMTDLERALGE 196 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhC---CC-EEEEE---CCCch---HH-HHHHHHHhhCcCcccccceEEecHHHHHHHHHH
Confidence 4677888888899999998777 44 33222 12111 10 011111111100 112345699999999999
Q ss_pred cCCceeEEEecC
Q 040309 79 AGFSHYKITPIL 90 (100)
Q Consensus 79 aGf~~~~v~~~~ 90 (100)
+||+++......
T Consensus 197 ~Gf~v~~~~~~~ 208 (219)
T TIGR02021 197 LGWKIVREGLVS 208 (219)
T ss_pred cCceeeeeeccc
Confidence 999999886553
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.10 E-value=0.042 Score=40.54 Aligned_cols=78 Identities=6% Similarity=0.034 Sum_probs=52.5
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|+.+++.-..+++++++.|+ |||++++.+...+..... ....++- .+..+|...+.+++...++ .||
T Consensus 237 ~~ehvg~~~~~~~l~~i~r~Lk---pGG~lvl~~i~~~~~~~~-----~~~~i~~--yifp~g~lps~~~i~~~~~-~~~ 305 (383)
T PRK11705 237 MFEHVGPKNYRTYFEVVRRCLK---PDGLFLLHTIGSNKTDTN-----VDPWINK--YIFPNGCLPSVRQIAQASE-GLF 305 (383)
T ss_pred chhhCChHHHHHHHHHHHHHcC---CCcEEEEEEccCCCCCCC-----CCCCcee--eecCCCcCCCHHHHHHHHH-CCc
Confidence 4566677777899999999999 999999988655432211 1111111 2334566778888888766 589
Q ss_pred ceeEEEecC
Q 040309 82 SHYKITPIL 90 (100)
Q Consensus 82 ~~~~v~~~~ 90 (100)
++..+...+
T Consensus 306 ~v~d~~~~~ 314 (383)
T PRK11705 306 VMEDWHNFG 314 (383)
T ss_pred EEEEEecCh
Confidence 988876543
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.06 E-value=0.027 Score=40.08 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=57.9
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCc
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 82 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~ 82 (100)
+++...+.-...++++++.|+ |||+++++....++.+... ...+.+ =.+..+|...|..+.....+++||.
T Consensus 147 fEhvg~~~~~~ff~~~~~~L~---~~G~~llh~I~~~~~~~~~----~~~~i~--~yiFPgG~lPs~~~i~~~~~~~~~~ 217 (283)
T COG2230 147 FEHVGKENYDDFFKKVYALLK---PGGRMLLHSITGPDQEFRR----FPDFID--KYIFPGGELPSISEILELASEAGFV 217 (283)
T ss_pred HHHhCcccHHHHHHHHHhhcC---CCceEEEEEecCCCccccc----chHHHH--HhCCCCCcCCCHHHHHHHHHhcCcE
Confidence 455566667789999999999 9999999998877654310 111111 1234678889999999999999999
Q ss_pred eeEEEecC
Q 040309 83 HYKITPIL 90 (100)
Q Consensus 83 ~~~v~~~~ 90 (100)
+..+...+
T Consensus 218 v~~~~~~~ 225 (283)
T COG2230 218 VLDVESLR 225 (283)
T ss_pred EehHhhhc
Confidence 98875543
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.05 E-value=0.08 Score=34.55 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
..++|+++.+.|+ |||++++++.... ...++.++++++||+...+...+
T Consensus 119 ~~~~l~~~~~~Lk---~gG~~~~~~~~~~----------------------------~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 119 IDRFLDELPEILK---EGGRVQLIQSSLN----------------------------GEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHHHhHHHhhC---CCCEEEEEEeccC----------------------------ChHHHHHHHHhCCCeEEEEEEee
Confidence 4678999999999 9999999873321 14688999999999999988877
Q ss_pred CcceEEEEe
Q 040309 91 GVRSLIEAY 99 (100)
Q Consensus 91 ~~~~vie~~ 99 (100)
.++--++++
T Consensus 168 ~~~~~~~~~ 176 (179)
T TIGR00537 168 LFFEELFAI 176 (179)
T ss_pred cCceEEEEE
Confidence 666666654
No 48
>PRK06922 hypothetical protein; Provisional
Probab=96.03 E-value=0.0086 Score=47.08 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS 42 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~ 42 (100)
++++..++|++++++|+ |||+++|.|.+.++++
T Consensus 512 ~~edl~kiLreI~RVLK---PGGrLII~D~v~~E~~ 544 (677)
T PRK06922 512 NHEVIKKGLQSAYEVLK---PGGRIIIRDGIMTEDK 544 (677)
T ss_pred cHHHHHHHHHHHHHHcC---CCcEEEEEeCccCCch
Confidence 56789999999999999 9999999998776543
No 49
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.95 E-value=0.098 Score=36.15 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEe
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
+....+++++.+.|+ |||++++.+...+ ..+++.+.+++.||++.++..
T Consensus 190 ~~~~~l~~~~~~~Lk---pgG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 NPLLELAPDLARLLK---PGGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHHHHHHHHhcC---CCcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEEEEE
Confidence 445678888889999 8999887643211 345788999999999999888
Q ss_pred cCCcceEEEEe
Q 040309 89 ILGVRSLIEAY 99 (100)
Q Consensus 89 ~~~~~~vie~~ 99 (100)
.+++.+++--+
T Consensus 239 ~~~W~~~~~~~ 249 (250)
T PRK00517 239 RGEWVALVGKK 249 (250)
T ss_pred eCCEEEEEEEe
Confidence 77777766443
No 50
>PTZ00146 fibrillarin; Provisional
Probab=95.89 E-value=0.075 Score=38.08 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=40.1
Q ss_pred ccccCChH-HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcC
Q 040309 2 ILHNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 80 (100)
Q Consensus 2 vlHdw~d~-~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aG 80 (100)
|++|..+. +...++.+++..|+ |||+++|.-....-+..++ -.++=.+|. ++|+++|
T Consensus 206 V~~Dva~pdq~~il~~na~r~LK---pGG~~vI~ika~~id~g~~------------------pe~~f~~ev-~~L~~~G 263 (293)
T PTZ00146 206 IFADVAQPDQARIVALNAQYFLK---NGGHFIISIKANCIDSTAK------------------PEVVFASEV-QKLKKEG 263 (293)
T ss_pred EEEeCCCcchHHHHHHHHHHhcc---CCCEEEEEEeccccccCCC------------------HHHHHHHHH-HHHHHcC
Confidence 45555433 44566678899999 9999999421111111111 111111344 8899999
Q ss_pred CceeEEEecC
Q 040309 81 FSHYKITPIL 90 (100)
Q Consensus 81 f~~~~v~~~~ 90 (100)
|+.++++.+.
T Consensus 264 F~~~e~v~L~ 273 (293)
T PTZ00146 264 LKPKEQLTLE 273 (293)
T ss_pred CceEEEEecC
Confidence 9999988764
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.80 E-value=0.011 Score=41.38 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.9
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
|+||.|++++..+++++++++|+ |||.|++-..
T Consensus 211 nvl~yf~~~~~~~~l~~l~~~L~---pGG~L~lg~~ 243 (264)
T smart00138 211 NVLIYFDEPTQRKLLNRFAEALK---PGGYLFLGHS 243 (264)
T ss_pred hhHHhCCHHHHHHHHHHHHHHhC---CCeEEEEECc
Confidence 58999999999999999999999 9999998653
No 52
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.59 E-value=0.087 Score=37.85 Aligned_cols=84 Identities=19% Similarity=0.176 Sum_probs=50.6
Q ss_pred cCChHHHHH-HHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhh-hhhh---hhcccccCceecCHHHHHHHHHHc
Q 040309 5 NWNDEESVK-LLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ-LCFD---ILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 5 dw~d~~~~~-iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~-~~~d---l~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
-|+|.+.++ -|+.++.++. |||.|+---. +..+ .....+ .+.+ -.-+++ +.||.+|..+|+++|
T Consensus 221 lF~Dn~lv~~sl~gl~~al~---pgG~lIyTgQ----PwHP-Qle~IAr~LtsHr~g~~WvM---RrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 221 LFPDNDLVRRSLAGLARALE---PGGYLIYTGQ----PWHP-QLEMIARVLTSHRDGKAWVM---RRRSQAEMDQLVEAA 289 (311)
T ss_pred hCCcHHHHHHHHHHHHHHhC---CCcEEEEcCC----CCCc-chHHHHHHHhcccCCCceEE---EecCHHHHHHHHHHc
Confidence 478877555 6999999999 8997764321 1111 000001 1111 011222 789999999999999
Q ss_pred CCceeEEE-ecCCcceEEEEe
Q 040309 80 GFSHYKIT-PILGVRSLIEAY 99 (100)
Q Consensus 80 Gf~~~~v~-~~~~~~~vie~~ 99 (100)
||+..+.. ..-|.++|--|+
T Consensus 290 GF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 290 GFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred CCchhhheeccCCceEEEeec
Confidence 99966542 334567766554
No 53
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.43 E-value=0.1 Score=36.83 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=46.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|..++++...+++++++.|+ |||.+++++....+....+ .. .-...+.+|++++++. |
T Consensus 193 vl~~l~~~~~~~~l~~~~~~Lk---pgG~~l~v~~~~~~~~~~~--------~p-------~~~~~~~~el~~~~~~--~ 252 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTN---PGGYNLIVCAMDTEDYPCP--------MP-------FSFTFKEGELKDYYQD--W 252 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcC---CCcEEEEEEecccccCCCC--------CC-------CCcccCHHHHHHHhCC--C
Confidence 5787888889999999999999 9999888765543321110 00 0123578888888864 8
Q ss_pred ceeEEE
Q 040309 82 SHYKIT 87 (100)
Q Consensus 82 ~~~~v~ 87 (100)
++.+..
T Consensus 253 ~i~~~~ 258 (287)
T PRK12335 253 EIVKYN 258 (287)
T ss_pred EEEEEe
Confidence 887764
No 54
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=94.82 E-value=0.01 Score=37.73 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=42.7
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhh--hhhhhhcccccCceecCHHHHHHHHHHc
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ--LCFDILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~--~~~dl~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
++|++++. .++|+++.+.|+ ++|++++.+....+.-. ....+.. ...+..+.. .+. +.++|..+|++|
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk---~~G~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~a 151 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLK---PGGILIISDPNHNDELP-EQLEELMNLYSEVWSMIY--IGN--DKEEWKYILEEA 151 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEE---EEEEEEEEEEEHSHHHH-HHHHHHHHHHHHHHHHCC-------CCCGHHHHHHHT
T ss_pred chhhccCH--HHHHHHHHHHcC---CCcEEEEEECChHHHHH-HHHHHHHHHHHHHhhhhh--ccc--CHHHHHHHHHhc
Confidence 56777775 588999999999 89999999988221110 1110000 111222111 222 889999999999
Q ss_pred C
Q 040309 80 G 80 (100)
Q Consensus 80 G 80 (100)
|
T Consensus 152 g 152 (152)
T PF13847_consen 152 G 152 (152)
T ss_dssp T
T ss_pred C
Confidence 8
No 55
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.64 E-value=0.15 Score=34.08 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=44.0
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|..+| -.++|+++++.|+ |||.+++.+..... .. ....... ..+....+.++|.++++++ |
T Consensus 107 ~l~~~~~--~~~~l~~~~~~L~---~~G~l~~~~~~~~~---~~---~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f 169 (240)
T TIGR02072 107 ALQWCDD--LSQALSELARVLK---PGGLLAFSTFGPGT---LH---ELRQSFG-----QHGLRYLSLDELKALLKNS-F 169 (240)
T ss_pred hhhhccC--HHHHHHHHHHHcC---CCcEEEEEeCCccC---HH---HHHHHHH-----HhccCCCCHHHHHHHHHHh-c
Confidence 3444444 4679999999999 99999987543221 10 1111111 0234557899999999998 8
Q ss_pred ceeEEE
Q 040309 82 SHYKIT 87 (100)
Q Consensus 82 ~~~~v~ 87 (100)
+...+.
T Consensus 170 ~~~~~~ 175 (240)
T TIGR02072 170 ELLTLE 175 (240)
T ss_pred CCcEEE
Confidence 876653
No 56
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.48 E-value=0.013 Score=36.13 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=37.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHH--cCCc
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLA--AGFS 82 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~--aGf~ 82 (100)
+|.|+-..++++++++.|+ |||.++ +|.-- . ..+.+ ..-..-.+..+...-+-.++++..+|.+ .||+
T Consensus 17 n~GD~Gl~~~f~~~~~~L~---pGG~li-lEpQ~---w--~sY~~-~~~~~~~~~~n~~~i~lrP~~F~~~L~~~evGF~ 86 (110)
T PF06859_consen 17 NWGDEGLKRFFRRIYSLLR---PGGILI-LEPQP---W--KSYKK-AKRLSEEIRENYKSIKLRPDQFEDYLLEPEVGFS 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHEE---EEEEEE-EE------H--HHHHT-TTTS-HHHHHHHHH----GGGHHHHHTSTTT---
T ss_pred cCcCHHHHHHHHHHHHhhC---CCCEEE-EeCCC---c--HHHHH-HhhhhHHHHhHHhceEEChHHHHHHHHhcccceE
Confidence 6899999999999999999 787654 45211 0 01100 0000000111112222345578888887 5999
Q ss_pred eeEEEec
Q 040309 83 HYKITPI 89 (100)
Q Consensus 83 ~~~v~~~ 89 (100)
..+....
T Consensus 87 ~~e~~~~ 93 (110)
T PF06859_consen 87 SVEELGV 93 (110)
T ss_dssp EEEEE--
T ss_pred EEEEccc
Confidence 8876544
No 57
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.39 E-value=0.25 Score=33.87 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEE
Q 040309 8 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 8 d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
...+.+.-+.++++|+ |||.++|.|+......... ... .-.-++..-..+-.+.+||++..-.
T Consensus 142 ~~~A~~vna~vf~~LK---PGGv~~V~dH~a~pG~~~~---dt~-----------~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 142 PATAAKVNAAVFKALK---PGGVYLVEDHRADPGSGLS---DTI-----------TLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred cchHHHHHHHHHHhcC---CCcEEEEEeccccCCCChh---hhh-----------hhcccChHHHHHHHHhhcceeeeee
Confidence 5668899999999999 9999999999876543321 010 0122356677888899999987543
No 58
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.30 E-value=0.057 Score=38.52 Aligned_cols=32 Identities=6% Similarity=0.231 Sum_probs=28.4
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
|||..++++...+++++++++|+ |||.|++=.
T Consensus 231 NvliyF~~~~~~~vl~~l~~~L~---pgG~L~lG~ 262 (287)
T PRK10611 231 NVMIYFDKTTQERILRRFVPLLK---PDGLLFAGH 262 (287)
T ss_pred hHHhcCCHHHHHHHHHHHHHHhC---CCcEEEEeC
Confidence 58889999999999999999999 999876644
No 59
>PLN03075 nicotianamine synthase; Provisional
Probab=94.27 E-value=0.049 Score=39.03 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=27.4
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
+||+|+.++-.++|+++++.|+ |||.+++--
T Consensus 203 ALi~~dk~~k~~vL~~l~~~Lk---PGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMA---PGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcC---CCcEEEEec
Confidence 6899988889999999999999 899887653
No 60
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=94.18 E-value=0.54 Score=31.96 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=44.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 81 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf 81 (100)
++|..+.+.-.+.++++.++|+ |||++++.-...++.....| -...|.+|++++|.. +|
T Consensus 122 ~~~~l~~~~R~~~~~~l~~lLk---pgG~~ll~~~~~~~~~~~gp-----------------p~~~~~~eL~~~f~~-~~ 180 (213)
T TIGR03840 122 ALIALPEEMRQRYAAHLLALLP---PGARQLLITLDYDQSEMAGP-----------------PFSVSPAEVEALYGG-HY 180 (213)
T ss_pred hhccCCHHHHHHHHHHHHHHcC---CCCeEEEEEEEcCCCCCCCc-----------------CCCCCHHHHHHHhcC-Cc
Confidence 4678888888999999999999 99998777665432211100 123688888888863 45
Q ss_pred ceeEEE
Q 040309 82 SHYKIT 87 (100)
Q Consensus 82 ~~~~v~ 87 (100)
.+..+.
T Consensus 181 ~i~~~~ 186 (213)
T TIGR03840 181 EIELLE 186 (213)
T ss_pred eEEEEe
Confidence 555443
No 61
>PRK14968 putative methyltransferase; Provisional
Probab=93.86 E-value=0.78 Score=29.58 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
...+++++.+.|+ |||.+++...-. ...+++.++++++||++..+...
T Consensus 127 ~~~~i~~~~~~Lk---~gG~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 127 IDRFLDEVGRYLK---PGGRILLLQSSL----------------------------TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHHHHhcC---CCeEEEEEEccc----------------------------CCHHHHHHHHHHCCCeeeeeeec
Confidence 4678999999999 899888753100 12356788999999998877544
No 62
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.64 E-value=0.38 Score=34.03 Aligned_cols=63 Identities=19% Similarity=0.394 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCC------CC--CCchhhhhhhhhhhhcccccCceecCHHH----HHHHHHHc
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIEN------QS--QDKESMETQLCFDILMVSLFRGKERSVDD----WKKLFLAA 79 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~------~~--~~~~~~~~~~~~dl~ml~~~~g~~rt~~e----~~~ll~~a 79 (100)
..+|+.++++|+ |+|++|+.= ++|= ++ ...|. ..+++ .| .|.+| +.+.|+.+
T Consensus 168 ~~LL~~i~~~l~---p~G~lilAv-VlP~~pyVE~~~g~~~~P~----e~l~~------~g--~~~E~~v~~l~~v~~p~ 231 (265)
T PF05219_consen 168 LTLLRDIRRALK---PNGRLILAV-VLPFRPYVEFGGGKSNRPS----ELLPV------KG--ATFEEQVSSLVNVFEPA 231 (265)
T ss_pred HHHHHHHHHHhC---CCCEEEEEE-EecccccEEcCCCCCCCch----hhcCC------CC--CcHHHHHHHHHHHHHhc
Confidence 689999999999 888887753 4441 11 11111 12222 22 44444 44788999
Q ss_pred CCceeEEEecC
Q 040309 80 GFSHYKITPIL 90 (100)
Q Consensus 80 Gf~~~~v~~~~ 90 (100)
||++.+..+++
T Consensus 232 GF~v~~~tr~P 242 (265)
T PF05219_consen 232 GFEVERWTRLP 242 (265)
T ss_pred CCEEEEEeccC
Confidence 99999987653
No 63
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.38 E-value=0.9 Score=30.99 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=44.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC-CCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS-QDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 80 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~-~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aG 80 (100)
++|..+.+.-.+.++++.++|+ |||+++++-...++.. ..+| ...|.+|++++|.. +
T Consensus 125 ~~~~l~~~~R~~~~~~l~~lL~---pgG~~~l~~~~~~~~~~~gPp------------------~~~~~~el~~~~~~-~ 182 (218)
T PRK13255 125 ALIALPEEMRERYVQQLAALLP---AGCRGLLVTLDYPQEELAGPP------------------FSVSDEEVEALYAG-C 182 (218)
T ss_pred hHhhCCHHHHHHHHHHHHHHcC---CCCeEEEEEEEeCCccCCCCC------------------CCCCHHHHHHHhcC-C
Confidence 4688899999999999999999 9998666544443222 1111 13588889888853 2
Q ss_pred CceeEEEe
Q 040309 81 FSHYKITP 88 (100)
Q Consensus 81 f~~~~v~~ 88 (100)
|.+..+..
T Consensus 183 ~~i~~~~~ 190 (218)
T PRK13255 183 FEIELLER 190 (218)
T ss_pred ceEEEeee
Confidence 66665543
No 64
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.12 E-value=0.13 Score=36.21 Aligned_cols=70 Identities=13% Similarity=0.267 Sum_probs=43.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHc--CCc
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA--GFS 82 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~a--Gf~ 82 (100)
||.|+-.+++++++++-|. |||.|++ | |.+. ..+.+.+.... ..-.+..--...++.+..|+.++ ||+
T Consensus 182 NwgD~GL~~ff~kis~ll~---pgGiLvv-E---PQpW--ksY~kaar~~e-~~~~ny~~i~lkp~~f~~~l~q~~vgle 251 (288)
T KOG2899|consen 182 NWGDDGLRRFFRKISSLLH---PGGILVV-E---PQPW--KSYKKAARRSE-KLAANYFKIFLKPEDFEDWLNQIVVGLE 251 (288)
T ss_pred ccccHHHHHHHHHHHHhhC---cCcEEEE-c---CCch--HHHHHHHHHHH-HhhcCccceecCHHHHHhhhhhhhhhee
Confidence 8999999999999999999 8886654 3 2111 12222222111 11111224566889999999988 555
Q ss_pred ee
Q 040309 83 HY 84 (100)
Q Consensus 83 ~~ 84 (100)
-+
T Consensus 252 ~~ 253 (288)
T KOG2899|consen 252 SV 253 (288)
T ss_pred ee
Confidence 44
No 65
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=92.93 E-value=0.44 Score=32.73 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=41.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhh--------hcc--cccCceecCHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI--------LMV--SLFRGKERSVDD 71 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl--------~ml--~~~~g~~rt~~e 71 (100)
++|..+|. .++|++++++|+ |||++++. .++.... +. ...+..+ .+. ....+..-+..+
T Consensus 102 ~l~~~~d~--~~~l~~~~~~Lk---pgG~~~~~---~~~~~~~-~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 170 (258)
T PRK01683 102 SLQWLPDH--LELFPRLVSLLA---PGGVLAVQ---MPDNLDE-PS--HVLMREVAENGPWEQNLPDRGARRAPLPPPHA 170 (258)
T ss_pred ChhhCCCH--HHHHHHHHHhcC---CCcEEEEE---CCCCCCC-HH--HHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence 45655553 689999999999 99998885 2322211 11 0001110 000 000123357889
Q ss_pred HHHHHHHcCCce
Q 040309 72 WKKLFLAAGFSH 83 (100)
Q Consensus 72 ~~~ll~~aGf~~ 83 (100)
+.+++.++|+.+
T Consensus 171 ~~~~l~~~g~~v 182 (258)
T PRK01683 171 YYDALAPAACRV 182 (258)
T ss_pred HHHHHHhCCCce
Confidence 999999999864
No 66
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=92.66 E-value=0.46 Score=32.21 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
..+++++.+.|+ |||++++.- . ....+++.++|+++||+.+++.+.
T Consensus 197 ~~~i~~~~~~L~---~gG~~~~~~--------~---------------------~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 197 RRIIAQAPRLLK---PGGWLLLEI--------G---------------------YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred HHHHHHHHHhcc---cCCEEEEEE--------C---------------------ccHHHHHHHHHHhCCCCceEEEeC
Confidence 478999999999 899887621 0 123467899999999999888664
No 67
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.64 E-value=0.2 Score=36.22 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=27.9
Q ss_pred ccccCChHHHHHHHHHHHH-hCCCCCCCcEEEE-Eeee
Q 040309 2 ILHNWNDEESVKLLKKCKE-AIPSKDEGGKVII-IDMA 37 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~-al~~~~pgg~lli-~e~v 37 (100)
.+.|++++++..+|+++++ +|. ||+.+|| +|..
T Consensus 166 siGNf~~~ea~~fL~~~~~~~l~---~~d~lLiG~D~~ 200 (319)
T TIGR03439 166 SIGNFSRPEAAAFLAGFLATALS---PSDSFLIGLDGC 200 (319)
T ss_pred cccCCCHHHHHHHHHHHHHhhCC---CCCEEEEecCCC
Confidence 5789999999999999999 999 7888777 3444
No 68
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=92.62 E-value=0.69 Score=31.67 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCce
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 83 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~ 83 (100)
..++|+++++.|+ |||.+++....... -+ +....+...-.......-.+.++|.+++...|++.
T Consensus 119 ~~~~l~~~~~~Lk---~gG~l~~~~~~~~~---~~---el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 119 LSTALRELYRVVR---PGGVVAFTTLVQGS---LP---ELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHHHHHHHHcC---CCeEEEEEeCCCCc---hH---HHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 4789999999999 99999987654221 11 11111110000111234468999999999999874
No 69
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=92.26 E-value=0.66 Score=30.38 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
...+++.+++.|+ |||++++..... -+.++..++++++||+.+++.
T Consensus 110 ~~~~l~~~~~~Lk---~gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 110 LTAIIDWSLAHLH---PGGRLVLTFILL----------------------------ENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred HHHHHHHHHHhcC---CCeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcceEE
Confidence 4568888889999 889887743211 124577789999999877764
No 70
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=92.26 E-value=0.21 Score=34.84 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=49.3
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhh----hhcc--cccC-ceecCHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD----ILMV--SLFR-GKERSVDDWKK 74 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~d----l~ml--~~~~-g~~rt~~e~~~ 74 (100)
||++-+|.+. ++++|.+-++ |||.+++..... ..-++ ....+. +.++ .... ++-.-.+|...
T Consensus 133 VlEHv~dp~~--~~~~c~~lvk---P~G~lf~STinr----t~ka~--~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~ 201 (243)
T COG2227 133 VLEHVPDPES--FLRACAKLVK---PGGILFLSTINR----TLKAY--LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIR 201 (243)
T ss_pred HHHccCCHHH--HHHHHHHHcC---CCcEEEEecccc----CHHHH--HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHH
Confidence 6788888754 9999999999 999888766442 11111 111111 1111 1111 55668899999
Q ss_pred HHHHcCCceeEEEe
Q 040309 75 LFLAAGFSHYKITP 88 (100)
Q Consensus 75 ll~~aGf~~~~v~~ 88 (100)
++.++||++.....
T Consensus 202 ~~~~~~~~~~~~~g 215 (243)
T COG2227 202 WLLGANLKIIDRKG 215 (243)
T ss_pred hcccCCceEEeecc
Confidence 99999999888754
No 71
>PRK05785 hypothetical protein; Provisional
Probab=92.24 E-value=1 Score=30.73 Aligned_cols=90 Identities=9% Similarity=0.079 Sum_probs=48.7
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhh--hhhhhhh------------cccccCceec
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET--QLCFDIL------------MVSLFRGKER 67 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~--~~~~dl~------------ml~~~~g~~r 67 (100)
.||+++|. .+.|++++++|+ | .+.|+|...|+.......... ....... .+..+--.--
T Consensus 119 ~l~~~~d~--~~~l~e~~RvLk---p--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~ 191 (226)
T PRK05785 119 ALHASDNI--EKVIAEFTRVSR---K--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLP 191 (226)
T ss_pred hhhccCCH--HHHHHHHHHHhc---C--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Confidence 47888775 679999999999 7 455777655432211000000 0000000 0111111223
Q ss_pred CHHHHHHHHHHcCCceeEEEecC-CcceEEEEe
Q 040309 68 SVDDWKKLFLAAGFSHYKITPIL-GVRSLIEAY 99 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~-~~~~vie~~ 99 (100)
+.+++.++++++| ..++..... |..++..++
T Consensus 192 ~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 192 TNSFHREIFEKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred CHHHHHHHHHHHh-CceEEEEccccEEEEEEEe
Confidence 7899999999974 666666654 344555443
No 72
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=92.14 E-value=0.52 Score=32.44 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
....|+++.+.|+ |||.|.|.|...- +. +.++|.+.++..||+...-....
T Consensus 137 ~~~fi~EA~RvLK---~~G~L~IAEV~SR----------f~----------------~~~~F~~~~~~~GF~~~~~d~~n 187 (219)
T PF05148_consen 137 WPDFIREANRVLK---PGGILKIAEVKSR----------FE----------------NVKQFIKALKKLGFKLKSKDESN 187 (219)
T ss_dssp HHHHHHHHHHHEE---EEEEEEEEEEGGG-----------S-----------------HHHHHHHHHCTTEEEEEEE--S
T ss_pred cHHHHHHHHheec---cCcEEEEEEeccc----------Cc----------------CHHHHHHHHHHCCCeEEecccCC
Confidence 3568999999999 9999999995431 11 56789999999999998865455
Q ss_pred CcceEEEEe
Q 040309 91 GVRSLIEAY 99 (100)
Q Consensus 91 ~~~~vie~~ 99 (100)
..+.+.|.+
T Consensus 188 ~~F~~f~F~ 196 (219)
T PF05148_consen 188 KHFVLFEFK 196 (219)
T ss_dssp TTEEEEEEE
T ss_pred CeEEEEEEE
Confidence 566666653
No 73
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=90.42 E-value=0.19 Score=33.83 Aligned_cols=32 Identities=16% Similarity=0.418 Sum_probs=27.5
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
|||--++++...+++++++++|+ |||-|++-.
T Consensus 144 NVlIYF~~~~~~~vl~~l~~~L~---pgG~L~lG~ 175 (196)
T PF01739_consen 144 NVLIYFDPETQQRVLRRLHRSLK---PGGYLFLGH 175 (196)
T ss_dssp SSGGGS-HHHHHHHHHHHGGGEE---EEEEEEE-T
T ss_pred CEEEEeCHHHHHHHHHHHHHHcC---CCCEEEEec
Confidence 68888999999999999999999 899888755
No 74
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=90.20 E-value=0.8 Score=28.63 Aligned_cols=33 Identities=21% Similarity=0.040 Sum_probs=27.4
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEecCC-cceE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYKITPILG-VRSL 95 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~v~~~~~-~~~v 95 (100)
.+.-+|.++++.++++|||++.+.+.-.. .+++
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 46789999999999999999999987653 4544
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=89.71 E-value=0.59 Score=27.89 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=21.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
+.+.....++++++++.|+ |||++++.
T Consensus 95 ~~~~~~~~~~l~~~~~~Lk---~gG~li~~ 121 (124)
T TIGR02469 95 GGSGGLLQEILEAIWRRLR---PGGRIVLN 121 (124)
T ss_pred CCcchhHHHHHHHHHHHcC---CCCEEEEE
Confidence 4445556789999999999 89998764
No 76
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=88.62 E-value=3.1 Score=28.71 Aligned_cols=59 Identities=8% Similarity=0.242 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcE-----EEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCc
Q 040309 8 DEESVKLLKKCKEAIPSKDEGGK-----VIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 82 (100)
Q Consensus 8 d~~~~~iL~~~~~al~~~~pgg~-----lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~ 82 (100)
..+--+.|+++++-|+ |+|. |+|+ +|.. ...|++--+.+.|+.+++.-||.
T Consensus 120 p~~RG~Ml~r~~~fL~---~~g~~~~~~LFlV---lP~~------------------Cv~NSRy~~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLK---PPGLSLFPSLFLV---LPLP------------------CVTNSRYMTEERLREIMESLGFT 175 (219)
T ss_pred HHHHHHHHHHHHHHhC---CCCccCcceEEEE---eCch------------------HhhcccccCHHHHHHHHHhCCcE
Confidence 4556789999999999 7787 5554 3321 12477888999999999999999
Q ss_pred eeEEEecC
Q 040309 83 HYKITPIL 90 (100)
Q Consensus 83 ~~~v~~~~ 90 (100)
.++.....
T Consensus 176 ~~~~~~~~ 183 (219)
T PF11968_consen 176 RVKYKKSK 183 (219)
T ss_pred EEEEEecC
Confidence 99876654
No 77
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=88.09 E-value=0.54 Score=31.96 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.7
Q ss_pred ccccCCh-HHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 2 ILHNWND-EESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 2 vlHdw~d-~~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
|+|-++| ++...+++++.++|. |||.|++...
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~---pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALA---PGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEE---EEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhC---CCCEEEEEEe
Confidence 6788876 678999999999999 9999999775
No 78
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=87.98 E-value=2.6 Score=29.05 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEe
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
-.++++++.+.|+ |||++++ +. +. ...+++++++++.||+.++++.
T Consensus 217 ~~~~~~~~~~~Lk---~gG~l~~-e~-----g~-----------------------~~~~~~~~~l~~~gf~~v~~~~ 262 (275)
T PRK09328 217 YRRIIEQAPRYLK---PGGWLLL-EI-----GY-----------------------DQGEAVRALLAAAGFADVETRK 262 (275)
T ss_pred HHHHHHHHHHhcc---cCCEEEE-EE-----Cc-----------------------hHHHHHHHHHHhCCCceeEEec
Confidence 4678999999999 8998887 22 00 1134588999999999777653
No 79
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=87.60 E-value=1.8 Score=29.86 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=33.3
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE 46 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~ 46 (100)
+||..+++.-.+..+++.+.|+ |||+++++-.-.+.....+|
T Consensus 133 ~~~Alpp~~R~~Y~~~l~~lL~---pgg~llll~~~~~~~~~GPP 174 (226)
T PRK13256 133 AYIALPNDLRTNYAKMMLEVCS---NNTQILLLVMEHDKKSQTPP 174 (226)
T ss_pred hHhcCCHHHHHHHHHHHHHHhC---CCcEEEEEEEecCCCCCCCC
Confidence 5778899999999999999999 99999999765543333334
No 80
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=86.90 E-value=1.5 Score=30.93 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEE
Q 040309 8 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 8 d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
.++=.+.|+|+...|+ |||.|++....-. .. + ...-. .+..-.-+.+..++-|++|||.+.+..
T Consensus 175 ~~~y~~al~ni~~lLk---pGG~Lil~~~l~~-t~----Y-----~vG~~---~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 175 LDEYRRALRNISSLLK---PGGHLILAGVLGS-TY----Y-----MVGGH---KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp HHHHHHHHHHHHTTEE---EEEEEEEEEESS--SE----E-----EETTE---EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHcC---CCcEEEEEEEcCc-ee----E-----EECCE---ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 3456789999999999 9999999886421 10 0 00000 012234588999999999999998876
Q ss_pred e
Q 040309 88 P 88 (100)
Q Consensus 88 ~ 88 (100)
.
T Consensus 239 ~ 239 (256)
T PF01234_consen 239 K 239 (256)
T ss_dssp G
T ss_pred c
Confidence 4
No 81
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=86.45 E-value=6.3 Score=27.59 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=46.2
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh-hhhhhh----hhcccccCceecCHHHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME-TQLCFD----ILMVSLFRGKERSVDDWKKLF 76 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~-~~~~~d----l~ml~~~~g~~rt~~e~~~ll 76 (100)
++.-.+++++.++|+.+.+... ||+. ++.|.+.+-.+. .... ...... ..+-....+ -+.+|..++|
T Consensus 167 vl~YL~~~~v~~ll~~i~~~~~---~gs~-l~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 238 (260)
T TIGR00027 167 LLMYLTEEAVDALLAFIAELSA---PGSR-LAFDYVRPLDGE--WRAGMRAPVYHAARGVDGSGLVFG--IDRADVAEWL 238 (260)
T ss_pred hhhcCCHHHHHHHHHHHHHhCC---CCcE-EEEEeccccchh--HHHHHHHHHHHhhhcccccccccC--CChhhHHHHH
Confidence 5667789999999999998776 5665 557776552111 1100 000110 000011112 3678999999
Q ss_pred HHcCCceeEE
Q 040309 77 LAAGFSHYKI 86 (100)
Q Consensus 77 ~~aGf~~~~v 86 (100)
++.||+....
T Consensus 239 ~~~Gw~~~~~ 248 (260)
T TIGR00027 239 AERGWRASEH 248 (260)
T ss_pred HHCCCeeecC
Confidence 9999998765
No 82
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=86.22 E-value=1.7 Score=29.20 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=28.6
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
++||++++++..++++++++.++ +.++|.|...+.
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 36888888889999999999866 688888886543
No 83
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.96 E-value=0.79 Score=30.35 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=26.4
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
||+-+..-++....|+.|++-|+ |||+|-|.
T Consensus 55 HvlEHlt~~Eg~~alkechr~Lr---p~G~LriA 85 (185)
T COG4627 55 HVLEHLTYDEGTSALKECHRFLR---PGGKLRIA 85 (185)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhC---cCcEEEEE
Confidence 45666777889999999999999 99999875
No 84
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=85.68 E-value=2.1 Score=29.22 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=42.6
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCC-CchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQ-DKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 80 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~-~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aG 80 (100)
.|+-.+++.-.+..+.+.+.|+ |||++|++-...+.... ++|+ .-+.+|++++|. .+
T Consensus 125 ~l~Alpp~~R~~Ya~~l~~ll~---p~g~~lLi~l~~~~~~~~GPPf------------------~v~~~ev~~l~~-~~ 182 (218)
T PF05724_consen 125 FLCALPPEMRERYAQQLASLLK---PGGRGLLITLEYPQGEMEGPPF------------------SVTEEEVRELFG-PG 182 (218)
T ss_dssp STTTS-GGGHHHHHHHHHHCEE---EEEEEEEEEEES-CSCSSSSS----------------------HHHHHHHHT-TT
T ss_pred ccccCCHHHHHHHHHHHHHHhC---CCCcEEEEEEEcCCcCCCCcCC------------------CCCHHHHHHHhc-CC
Confidence 4677788888999999999999 99995554443333221 2332 126688888888 88
Q ss_pred CceeEEEe
Q 040309 81 FSHYKITP 88 (100)
Q Consensus 81 f~~~~v~~ 88 (100)
|++..+..
T Consensus 183 f~i~~l~~ 190 (218)
T PF05724_consen 183 FEIEELEE 190 (218)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEec
Confidence 88777653
No 85
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=85.67 E-value=1.5 Score=32.54 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=25.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
|.++++.+.++++.+++.|+ |||+++|+-
T Consensus 312 ~~~~~~ia~~l~~~a~~~Lk---pGG~L~iV~ 340 (378)
T PRK15001 312 HALTDNVAWEMFHHARRCLK---INGELYIVA 340 (378)
T ss_pred ccCCHHHHHHHHHHHHHhcc---cCCEEEEEE
Confidence 45677788999999999999 999999984
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=84.88 E-value=4.4 Score=26.81 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEE
Q 040309 8 DEESVKLLKKCKEAIPSKDEGGKVII 33 (100)
Q Consensus 8 d~~~~~iL~~~~~al~~~~pgg~lli 33 (100)
..+...+|+.+.+.|+ |||++++
T Consensus 121 ~~~~~~~l~~~~~~Lk---pgG~lv~ 143 (198)
T PRK00377 121 SEKLKEIISASWEIIK---KGGRIVI 143 (198)
T ss_pred cccHHHHHHHHHHHcC---CCcEEEE
Confidence 3445778888888888 8888875
No 87
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=84.58 E-value=1.6 Score=31.14 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=46.8
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcc-ccc-----CceecCHHHHHHHH
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV-SLF-----RGKERSVDDWKKLF 76 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml-~~~-----~g~~rt~~e~~~ll 76 (100)
+|+-.| -..+++.+.+.|+ |+|+|+|......-.. + .....++-..+ +.. ..+--+++|..+++
T Consensus 168 leHV~d--p~~~l~~l~~~lk---P~G~lfittinrt~lS----~-~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 168 LEHVKD--PQEFLNCLSALLK---PNGRLFITTINRTILS----F-AGTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL 237 (282)
T ss_pred HHHHhC--HHHHHHHHHHHhC---CCCceEeeehhhhHHH----h-hccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence 444444 3789999999999 9999999875432110 1 01111221111 111 13456899999999
Q ss_pred HHcCCceeEEE
Q 040309 77 LAAGFSHYKIT 87 (100)
Q Consensus 77 ~~aGf~~~~v~ 87 (100)
+.+|+++..+.
T Consensus 238 ~~~~~~v~~v~ 248 (282)
T KOG1270|consen 238 NANGAQVNDVV 248 (282)
T ss_pred HhcCcchhhhh
Confidence 99999988774
No 88
>PRK14967 putative methyltransferase; Provisional
Probab=84.15 E-value=9.2 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
..++++++.+.|+ |||+++++..-.
T Consensus 138 ~~~~l~~a~~~Lk---~gG~l~~~~~~~ 162 (223)
T PRK14967 138 LDRLCDAAPALLA---PGGSLLLVQSEL 162 (223)
T ss_pred HHHHHHHHHHhcC---CCcEEEEEEecc
Confidence 4568899999999 999999875443
No 89
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=82.90 E-value=2.8 Score=23.14 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 8 DEESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 8 d~~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
++....+++++.+.++ |+|.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~---~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLK---PGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcC---CCCEEEEE
Confidence 5678899999999999 89998875
No 90
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=82.36 E-value=2.1 Score=28.17 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=22.3
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEec
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
.+-.|.+++.++++++||++++....
T Consensus 143 ~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 143 IHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred cccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 45679999999999999999987654
No 91
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=82.17 E-value=1 Score=24.43 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=11.0
Q ss_pred HHHHHcCCceeEEEe
Q 040309 74 KLFLAAGFSHYKITP 88 (100)
Q Consensus 74 ~ll~~aGf~~~~v~~ 88 (100)
+||++|||..-+-+.
T Consensus 31 ~WL~~aGF~~G~~v~ 45 (57)
T PF08845_consen 31 KWLEEAGFTIGDPVK 45 (57)
T ss_pred hhhHHhCCCCCCEEE
Confidence 689999997654433
No 92
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=80.42 E-value=11 Score=27.21 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
....++.+++.|+ +||.+.|.|.-.- +.| ..+|.+-|...||.+....-..
T Consensus 243 ~~df~kEa~RiLk---~gG~l~IAEv~SR-------------f~d-------------v~~f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 243 LADFIKEANRILK---PGGLLYIAEVKSR-------------FSD-------------VKGFVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred HHHHHHHHHHHhc---cCceEEEEehhhh-------------ccc-------------HHHHHHHHHHcCCeeeehhhhc
Confidence 3568999999999 9999999984321 112 2347788888899888776555
Q ss_pred CcceEEEEe
Q 040309 91 GVRSLIEAY 99 (100)
Q Consensus 91 ~~~~vie~~ 99 (100)
.++.+.|..
T Consensus 294 ~~F~lfefk 302 (325)
T KOG3045|consen 294 KYFTLFEFK 302 (325)
T ss_pred ceEEEEEEe
Confidence 666666653
No 93
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=80.19 E-value=3.2 Score=30.09 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=27.4
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEecC-CcceE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYKITPIL-GVRSL 95 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~v~~~~-~~~~v 95 (100)
++.-||.++++.++++|||++.+++.-+ +.+++
T Consensus 284 ~S~Kyt~~~~~~l~~~aG~~~~~~W~d~~~~f~~ 317 (319)
T TIGR03439 284 CSGKYDKDEREKLCQSAGLKVVDVWTNEDGDYGI 317 (319)
T ss_pred eeeCCCHHHHHHHHHHCCCeeeEEEECCCCceee
Confidence 4678999999999999999999998765 34444
No 94
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=79.33 E-value=6.9 Score=25.89 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=28.9
Q ss_pred HHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEe
Q 040309 19 KEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 19 ~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
..+++ +|-|++|+|-++..++ |.....+|++++|++++.+..
T Consensus 110 ~~~l~---~G~rVlIVDDllaTGg-------------------------T~~a~~~Ll~~~ga~vvg~~~ 151 (179)
T COG0503 110 KDALK---PGDRVLIVDDLLATGG-------------------------TALALIELLEQAGAEVVGAAF 151 (179)
T ss_pred hhhCC---CCCEEEEEecchhcCh-------------------------HHHHHHHHHHHCCCEEEEEEE
Confidence 34566 6778888876664322 556677888888888887643
No 95
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.17 E-value=2.9 Score=31.09 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=28.3
Q ss_pred cC-ChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 5 NW-NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 5 dw-~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
|| ++++..++.+.+.++++ |||||+.--...+.
T Consensus 306 Dwm~~~~~~~~~~~l~~~~~---pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 306 DWMDPEQLNEEWQELARTAR---PGARVLWRSAAVPP 339 (380)
T ss_pred hhCCHHHHHHHHHHHHHHhC---CCCEEEEeeCCCCC
Confidence 55 78889999999999999 99999998776553
No 96
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=76.99 E-value=3.8 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.480 Sum_probs=27.2
Q ss_pred CccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 1 GILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 1 ~vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
|||=-++.+.-.+|+++.+.+|+ |||.|+|=.
T Consensus 210 NVLIYFd~~~q~~il~~f~~~L~---~gG~LflG~ 241 (268)
T COG1352 210 NVLIYFDEETQERILRRFADSLK---PGGLLFLGH 241 (268)
T ss_pred ceEEeeCHHHHHHHHHHHHHHhC---CCCEEEEcc
Confidence 56666788888999999999999 899988754
No 97
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=75.93 E-value=7.8 Score=26.89 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=35.6
Q ss_pred HhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 20 EAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 20 ~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
.++. +|.++||+|-++..+++-....+.....+-......-=-++....|+++.++.|+.+..++..
T Consensus 171 ~~l~---~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~sl~~~ 237 (238)
T PRK08558 171 SALK---KGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEVGIDRAREETDAPVDALYTL 237 (238)
T ss_pred HHcC---CcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCchHHHHHhHhcCCCEEEEEEe
Confidence 3567 799999999999766543100000001111100000001233345888888889888776643
No 98
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=75.90 E-value=21 Score=25.05 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhh---hhccc----ccCceecCHHHHHHHHHHcCCcee
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD---ILMVS----LFRGKERSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~d---l~ml~----~~~g~~rt~~e~~~ll~~aGf~~~ 84 (100)
.++|.+....|. |||.|.|. +|++...+....+...-+ ..... ...+..-|...|.++|...+ ..+
T Consensus 109 ~~ll~rL~~~L~---Pgg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rv 181 (257)
T COG4106 109 PELLPRLVSQLA---PGGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLA-CRV 181 (257)
T ss_pred HHHHHHHHHhhC---CCceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCccc-cee
Confidence 788999999999 99988774 455544322110110100 11111 12344568999999999887 445
Q ss_pred EEEe------cCCcceEEEEe
Q 040309 85 KITP------ILGVRSLIEAY 99 (100)
Q Consensus 85 ~v~~------~~~~~~vie~~ 99 (100)
.|++ +.+..+|+|..
T Consensus 182 DiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 182 DIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred eeeeeeccccCCCccchhhhe
Confidence 5543 35667787764
No 99
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=75.29 E-value=2 Score=31.27 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEEEEee----ec----C-----CCCC-Cc-----------hhhhhhhhhhhhcccc
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVIIIDM----AI----E-----NQSQ-DK-----------ESMETQLCFDILMVSL 61 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~lli~e~----v~----~-----~~~~-~~-----------~~~~~~~~~dl~ml~~ 61 (100)
+.+.+..+|+|+...|+ |||.+|..=. +. . .... +. ....++.-.++.+--.
T Consensus 161 se~~ar~~l~Nvs~~Lk---~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~ 237 (331)
T PF03291_consen 161 SEEKARQFLKNVSSLLK---PGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDA 237 (331)
T ss_dssp SHHHHHHHHHHHHHTEE---EEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTC
T ss_pred CHHHHHHHHHHHHHhcC---CCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCc
Confidence 66778889999999999 9998886422 11 1 0000 00 0001222233333222
Q ss_pred c-Cceec--CHHHHHHHHHHcCCceeEEE
Q 040309 62 F-RGKER--SVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 62 ~-~g~~r--t~~e~~~ll~~aGf~~~~v~ 87 (100)
. +-.|+ ..+-+.+++++.||+++...
T Consensus 238 v~~~~EYlV~~~~~~~la~eyGLeLV~~~ 266 (331)
T PF03291_consen 238 VDDCPEYLVPFDFFVKLAKEYGLELVEKK 266 (331)
T ss_dssp SSCEEEE---HHHHHHHHHHTTEEEEEEE
T ss_pred CCCCceEEeeHHHHHHHHHHcCCEEEEeC
Confidence 2 34454 68899999999999998754
No 100
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=74.86 E-value=5.4 Score=29.13 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
+.+...++++++.+.|+ |||+++|+-.
T Consensus 278 ~~~~~~~~i~~a~~~Lk---pgG~L~iVan 304 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLN---SGGELRIVAN 304 (342)
T ss_pred cHHHHHHHHHHHHHhcC---cCCEEEEEEe
Confidence 45667899999999999 9999998754
No 101
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=74.36 E-value=5.3 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=21.2
Q ss_pred ccCce-ecCHHHHHHHHHHcCCceeEEEecCC
Q 040309 61 LFRGK-ERSVDDWKKLFLAAGFSHYKITPILG 91 (100)
Q Consensus 61 ~~~g~-~rt~~e~~~ll~~aGf~~~~v~~~~~ 91 (100)
+.+|+ --.-+|++++|+++||+.++.+-..|
T Consensus 12 NVGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SG 43 (137)
T PF08002_consen 12 NVGGKNKIKMAELREALEDLGFTNVRTYIQSG 43 (137)
T ss_dssp SBTTBS---HHHHHHHHHHCT-EEEEEETTTT
T ss_pred ecCCCCcccHHHHHHHHHHcCCCCceEEEeeC
Confidence 45564 36899999999999999998665444
No 102
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=74.03 E-value=2.9 Score=25.21 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=51.3
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCce-------ecCHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGK-------ERSVDDWKK 74 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~-------~rt~~e~~~ 74 (100)
+|=+++.++..++|.++..--+ +++++- +-|.+.. ...+.-+ --.+.+. ..+.++.++
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~-----~~~ifT--fAP~T~~------L~~m~~i--G~lFP~~dRsp~i~~~~e~~l~~ 68 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR-----GSLIFT--FAPRTPL------LALMHAI--GKLFPRPDRSPRIYPHREEDLRR 68 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc-----CcEEEE--ECCCCHH------HHHHHHH--hccCCCCCCCCcEEEeCHHHHHH
Confidence 4557899999999999877433 555543 3332211 1111110 0112333 346889999
Q ss_pred HHHHcCCceeEEEecCC-c--ceEEEEeC
Q 040309 75 LFLAAGFSHYKITPILG-V--RSLIEAYP 100 (100)
Q Consensus 75 ll~~aGf~~~~v~~~~~-~--~~vie~~p 100 (100)
.++++||++.+..++.. + -.++|++|
T Consensus 69 ~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 69 ALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHhCCCeeeecccccCcChHHHHhhccC
Confidence 99999999999888754 2 24677654
No 103
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=73.24 E-value=23 Score=25.16 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEe
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
...+.|+.+...|+ |||.-+-+-..+--.. +.. .....+-|-|.+|..++++..||++.+-..
T Consensus 180 Ni~~Yi~tI~~lLk---pgG~WIN~GPLlyh~~------------~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 180 NIIEYIETIEHLLK---PGGYWINFGPLLYHFE------------PMS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHHHHHHhc---cCCEEEecCCccccCC------------CCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 46788999999999 8993333322221110 110 011124788999999999999999987544
No 104
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=72.67 E-value=4.5 Score=21.15 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCceeEE
Q 040309 70 DDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 70 ~e~~~ll~~aGf~~~~v 86 (100)
+|+.++|+.+||+..+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 68999999999999864
No 105
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=71.46 E-value=2.3 Score=21.87 Aligned_cols=20 Identities=15% Similarity=0.552 Sum_probs=15.9
Q ss_pred ecCHHHHHHHHHHcCCceeE
Q 040309 66 ERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~ 85 (100)
.-=..||+++|..+|++..+
T Consensus 25 ~glP~eW~~ll~~sgis~~e 44 (46)
T cd01093 25 TGLPEEWQRLLKSSGITKEE 44 (46)
T ss_pred cCCCHHHHHHHHHcCCCHHH
Confidence 44568999999999987654
No 106
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=71.22 E-value=2.4 Score=25.14 Aligned_cols=65 Identities=25% Similarity=0.318 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccC-ceecCHHHHHHHHHHc---CCc
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR-GKERSVDDWKKLFLAA---GFS 82 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~-g~~rt~~e~~~ll~~a---Gf~ 82 (100)
+++.+||+-+.+.-. +-|...|+|.+.......- ....+.-+-.+| |+.++..+|++++.+. |+=
T Consensus 4 ~~a~~il~~V~~~~~---~~~~~~ivdvlrGs~~~~i------~~~~~~~l~~yG~gk~~~~~~~~~li~~Li~~g~L 72 (106)
T PF09382_consen 4 EEAKKILSCVQRLKQ---RFGLSQIVDVLRGSKSKKI------REKGHDQLPTYGIGKDMSKDDWERLIRQLILEGYL 72 (106)
T ss_dssp HHHHHHHHHHHHTTT----S-HHHHHHHHTT-S-CCC------HHTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhc---cccHHHHHHHHHhccchhh------hhcCCCcCcccCCcccCCHHHHHHHHHHHHHcCCc
Confidence 457788877776534 4567777777664433221 112333445566 9999999999999854 755
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=70.73 E-value=6.8 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
..++|+++++.|+ |||++++.
T Consensus 125 ~~~~l~~~~~~Lk---pgG~lvi~ 145 (188)
T TIGR00438 125 VELALDIAKEVLK---PKGNFVVK 145 (188)
T ss_pred HHHHHHHHHHHcc---CCCEEEEE
Confidence 3688999999999 99999885
No 108
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.53 E-value=24 Score=25.33 Aligned_cols=81 Identities=10% Similarity=0.010 Sum_probs=46.3
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhhhhhh--hhhcccccCceecCHHHHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMETQLCF--DILMVSLFRGKERSVDDWKKLFL 77 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~--~~~~~~~~~--dl~ml~~~~g~~rt~~e~~~ll~ 77 (100)
+|--.+.++..++|+++....+ ||+.++......+...... +. ...... ++...- ..=......|+..++.
T Consensus 179 Ll~YL~~~~v~~ll~~I~~~~~---~gS~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e-~~~~~~~~~e~~~~l~ 253 (297)
T COG3315 179 LLMYLPEEAVDRLLSRIAALSA---PGSRVAFDYSLPGSLRDRLRRPA-ARKTMRGEDLDRGE-LVYFGDDPAEIETWLA 253 (297)
T ss_pred ccccCCHHHHHHHHHHHHHhCC---CCceEEEeccccHHHHhcccchh-hhhhcccccccccc-ceeccCCHHHHHHHHH
Confidence 4556789999999999999888 7776665543111111110 00 001111 111000 0011235789999999
Q ss_pred HcCCceeEEE
Q 040309 78 AAGFSHYKIT 87 (100)
Q Consensus 78 ~aGf~~~~v~ 87 (100)
+.||......
T Consensus 254 ~~g~~~~~~~ 263 (297)
T COG3315 254 ERGWRSTLNR 263 (297)
T ss_pred hcCEEEEecC
Confidence 9999988763
No 109
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=70.12 E-value=8.3 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.7
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEE-EeeecC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVII-IDMAIE 39 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli-~e~v~~ 39 (100)
-|-|+++++|..+|.+++.+|+ ||-.+|+ +|...+
T Consensus 163 tlGN~tp~e~~~Fl~~l~~a~~---pGd~~LlGvDl~k~ 198 (321)
T COG4301 163 TLGNLTPGECAVFLTQLRGALR---PGDYFLLGVDLRKP 198 (321)
T ss_pred cccCCChHHHHHHHHHHHhcCC---CcceEEEeccccCH
Confidence 3678999999999999999999 7876665 444433
No 110
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=70.07 E-value=4.8 Score=27.12 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=26.9
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 37 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v 37 (100)
|+|..+.+...+|++++.++++ |||.+++...+
T Consensus 103 v~~fL~~~~~~~i~~~m~~~~~---pGG~~li~~~~ 135 (192)
T PF03848_consen 103 VFMFLQRELRPQIIENMKAATK---PGGYNLIVTFM 135 (192)
T ss_dssp SGGGS-GGGHHHHHHHHHHTEE---EEEEEEEEEEB
T ss_pred EeccCCHHHHHHHHHHHHhhcC---CcEEEEEEEec
Confidence 5677788888999999999999 89988886654
No 111
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=70.03 E-value=20 Score=22.69 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=43.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC---------------CCchhhhhhhhhhhhcccccCceecCH
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS---------------QDKESMETQLCFDILMVSLFRGKERSV 69 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~---------------~~~~~~~~~~~~dl~ml~~~~g~~rt~ 69 (100)
.++++++..+|++....|. .-|.-++.-.-..... ...+.--...++|+.--+..|+.+-|.
T Consensus 10 ~L~~~ea~~FL~~~~~~L~---~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lgl~~l~~f~W~lalGd~~Ls~ 86 (141)
T PF12419_consen 10 ELTTEEAYDFLTEAAPRLR---AAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLGLDQLLDFDWELALGDEELSE 86 (141)
T ss_pred ccCHHHHHHHHHHHHHHHH---HCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccChHHHhcceEEEEECCEECCH
Confidence 3688999999999888887 3343332221111100 000110122345555555678999999
Q ss_pred HHHHHHHHHcC
Q 040309 70 DDWKKLFLAAG 80 (100)
Q Consensus 70 ~e~~~ll~~aG 80 (100)
+||.+|+++..
T Consensus 87 eEf~~L~~~~~ 97 (141)
T PF12419_consen 87 EEFEQLVEQKR 97 (141)
T ss_pred HHHHHHHHcCC
Confidence 99999999774
No 112
>PRK07402 precorrin-6B methylase; Provisional
Probab=69.89 E-value=6 Score=26.04 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
...++++++.+.|+ |||++++...
T Consensus 120 ~~~~~l~~~~~~Lk---pgG~li~~~~ 143 (196)
T PRK07402 120 PIKEILQAVWQYLK---PGGRLVATAS 143 (196)
T ss_pred CHHHHHHHHHHhcC---CCeEEEEEee
Confidence 45688999999999 8999888864
No 113
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=68.96 E-value=9.7 Score=25.63 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeee
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMA 37 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v 37 (100)
..+|+.+++.|+ |||++++....
T Consensus 145 ~~~L~~~~~~Lk---pGG~~vi~~~~ 167 (209)
T PRK11188 145 ELALDMCRDVLA---PGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHHHHcC---CCCEEEEEEec
Confidence 578999999999 99999997543
No 114
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=68.16 E-value=5.7 Score=26.49 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
...+|+++++.|+ |||.+++..
T Consensus 135 ~~~~l~~i~~~Lk---pgG~l~i~~ 156 (202)
T PRK00121 135 QPEFLALYARKLK---PGGEIHFAT 156 (202)
T ss_pred CHHHHHHHHHHcC---CCCEEEEEc
Confidence 4678999999999 999999864
No 115
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=66.21 E-value=9.5 Score=27.60 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 41 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~ 41 (100)
+..+.|..+.+.|+ |||||+|+-+..=++
T Consensus 218 ~L~~~L~~~~~~L~---~gGrl~VISfHSLED 246 (305)
T TIGR00006 218 ELEEALQFAPNLLA---PGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHhc---CCCEEEEEecCcHHH
Confidence 45678999999999 999999998765443
No 116
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.78 E-value=5.8 Score=29.82 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=27.9
Q ss_pred hhhcccccCceecCH---HHHHHHHHHcCCceeEEEecC
Q 040309 55 DILMVSLFRGKERSV---DDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 55 dl~ml~~~~g~~rt~---~e~~~ll~~aGf~~~~v~~~~ 90 (100)
+..+|+.++|.+|-. ..++.+|+.|||..+.|+.+.
T Consensus 73 ~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 73 DAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred cEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 344667788998853 466889999999999998764
No 117
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=64.43 E-value=14 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
.+||+++.+.++ |||+|+..-+.+.
T Consensus 179 ~~iL~~a~~~lk---pgG~lvYstcs~~ 203 (264)
T TIGR00446 179 KELIDSAFDALK---PGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 569999999999 9999987666554
No 118
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=63.06 E-value=12 Score=26.95 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS 42 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~ 42 (100)
+....|.++...|+ |||+|+|+-+..=+++
T Consensus 214 ~L~~~L~~~~~~L~---~gGrl~visfHSlEDr 243 (296)
T PRK00050 214 ELERALEAALDLLK---PGGRLAVISFHSLEDR 243 (296)
T ss_pred HHHHHHHHHHHHhc---CCCEEEEEecCcHHHH
Confidence 45788999999999 9999999987654433
No 119
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=62.75 E-value=11 Score=25.16 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
...+++.+++.|+ |||++++.+
T Consensus 124 ~~~~l~~~~~~Lk---pGG~lv~~~ 145 (187)
T PRK00107 124 LSDLVELCLPLLK---PGGRFLALK 145 (187)
T ss_pred HHHHHHHHHHhcC---CCeEEEEEe
Confidence 4678999999999 999999884
No 120
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=62.19 E-value=25 Score=24.52 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=8.3
Q ss_pred CCcEEEEEeeecCC
Q 040309 27 EGGKVIIIDMAIEN 40 (100)
Q Consensus 27 pgg~lli~e~v~~~ 40 (100)
|||.-+|+|...+.
T Consensus 92 P~GvaiiVe~lTDN 105 (238)
T TIGR01033 92 PGGVAIIVECLTDN 105 (238)
T ss_pred CCceEEEEEEecCC
Confidence 56666666665543
No 121
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=61.58 E-value=11 Score=27.86 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEE
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVI 32 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~ll 32 (100)
+.+++...|+|+.+.|+ |||-.+
T Consensus 212 tee~ar~~l~Nva~~Lk---pGG~FI 234 (389)
T KOG1975|consen 212 TEESARIALRNVAKCLK---PGGVFI 234 (389)
T ss_pred cHHHHHHHHHHHHhhcC---CCcEEE
Confidence 56789999999999999 899654
No 122
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=61.40 E-value=11 Score=24.87 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e 35 (100)
..+++.+++.|+ |||++.+.-
T Consensus 112 ~~~l~~~~r~Lk---pgG~l~~~t 132 (194)
T TIGR00091 112 PHFLKEYANVLK---KGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHHhC---CCCEEEEEe
Confidence 468999999999 999987754
No 123
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=60.77 E-value=11 Score=28.09 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 41 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~ 41 (100)
-.+||+++.+.|+ |||+|++..+-+...
T Consensus 347 Q~~lL~~a~~~Lk---pgG~lvystcs~~~~ 374 (426)
T TIGR00563 347 QSEILDAIWPLLK---TGGTLVYATCSVLPE 374 (426)
T ss_pred HHHHHHHHHHhcC---CCcEEEEEeCCCChh
Confidence 3689999999999 999999999877543
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=60.53 E-value=16 Score=27.45 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
.+||+++.+.++ |||+|+...+.+..
T Consensus 357 ~~iL~~a~~~lk---pgG~lvystcs~~~ 382 (445)
T PRK14904 357 AELLDHAASLLK---PGGVLVYATCSIEP 382 (445)
T ss_pred HHHHHHHHHhcC---CCcEEEEEeCCCCh
Confidence 469999999999 99999998876643
No 125
>PF13592 HTH_33: Winged helix-turn helix
Probab=60.14 E-value=9.2 Score=20.51 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=22.9
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEec
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
-|..+|..-...||...||+-.+-.+.
T Consensus 18 fgv~ys~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 18 FGVKYSPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred HCCEEcHHHHHHHHHHcCCccccCCCC
Confidence 388899999999999999998776543
No 126
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=60.07 E-value=18 Score=24.22 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=36.2
Q ss_pred hCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhh--hhcccccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 21 AIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD--ILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 21 al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~d--l~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
+++ +|-|++|+|-++...++-... .....+ .......---+++...+++.+++.|+.+..+....
T Consensus 113 ~i~---~G~rVlIVDDviaTGgT~~a~--~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~ 179 (189)
T PRK09219 113 FLS---EGDRVLIIDDFLANGQAALGL--IDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVESLARIA 179 (189)
T ss_pred hCC---CCCEEEEEeehhhcChHHHHH--HHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcEEEEEEee
Confidence 566 899999999998765542100 000111 01000000124555568888888898888776553
No 127
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=59.75 E-value=18 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
...++++++++.|+ |||++++...
T Consensus 237 ~l~~ll~~~~~~Lk---pgG~li~sgi 260 (288)
T TIGR00406 237 VIKELYPQFSRLVK---PGGWLILSGI 260 (288)
T ss_pred HHHHHHHHHHHHcC---CCcEEEEEeC
Confidence 34678899999999 8999988664
No 128
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
Probab=59.39 E-value=11 Score=26.49 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=23.6
Q ss_pred ccccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 59 VSLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 59 l~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
++...||.| |.+++|++.||++.+.+++.
T Consensus 186 itl~EGrnr---QVRRm~~a~G~~V~~L~R~~ 214 (248)
T COG1187 186 ITLTEGRNR---QVRRMFEAVGLEVLRLKRIR 214 (248)
T ss_pred EEEeCCcCH---HHHHHHHHcCCEEeEEEEEE
Confidence 345568866 89999999999999988764
No 129
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=59.26 E-value=13 Score=28.46 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=22.3
Q ss_pred cCChHHH-------HHHHHHHHHhCCCCCCCcEEEEEeee
Q 040309 5 NWNDEES-------VKLLKKCKEAIPSKDEGGKVIIIDMA 37 (100)
Q Consensus 5 dw~d~~~-------~~iL~~~~~al~~~~pgg~lli~e~v 37 (100)
.|+.++. .+||+++.+.|+ |||+|+=.=+.
T Consensus 208 ~~s~~~v~~l~~lQ~~iL~~A~~~Lk---pGG~LVYSTCT 244 (470)
T PRK11933 208 NWSPESNLEIAATQRELIESAFHALK---PGGTLVYSTCT 244 (470)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcC---CCcEEEEECCC
Confidence 4666655 789999999999 99988544443
No 130
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=59.25 E-value=16 Score=26.64 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 41 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~ 41 (100)
...+.|..+...|+ |||||.|+-+..=++
T Consensus 222 ~L~~~L~~a~~~L~---~gGRl~VIsFHSLED 250 (314)
T COG0275 222 ELEEALEAALDLLK---PGGRLAVISFHSLED 250 (314)
T ss_pred HHHHHHHHHHHhhC---CCcEEEEEEecchHH
Confidence 45678889999999 999999998765443
No 131
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=58.98 E-value=12 Score=26.95 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=26.5
Q ss_pred ccccCChH-HHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 040309 2 ILHNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIIDMA 37 (100)
Q Consensus 2 vlHdw~d~-~~~~iL~~~~~al~~~~pgg~lli~e~v 37 (100)
|+|+|+-. .-.++++++.+.++ |||..+|.=.-
T Consensus 112 vihhlsT~~RR~~~l~e~~r~lr---pgg~~lvyvwa 145 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVLR---PGGNALVYVWA 145 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhc---CCCceEEEEeh
Confidence 67888554 46789999999999 99998887543
No 132
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=58.63 E-value=17 Score=19.79 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHcCCceeEEEecCCcceE
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILGVRSL 95 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~~~~v 95 (100)
+.++...|++..|+++..+...++.+.+
T Consensus 39 ~~~di~~~~~~~g~~~~~~~~~~~~~~i 66 (70)
T PF01206_consen 39 AVEDIPRWCEENGYEVVEVEEEGGEYRI 66 (70)
T ss_dssp HHHHHHHHHHHHTEEEEEEEESSSSEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence 4578899999999999988876665544
No 133
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=58.57 E-value=6 Score=27.42 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=6.7
Q ss_pred CCcEEEEEeeecC
Q 040309 27 EGGKVIIIDMAIE 39 (100)
Q Consensus 27 pgg~lli~e~v~~ 39 (100)
|||..+|+|...+
T Consensus 88 P~Gvaiive~lTD 100 (234)
T PF01709_consen 88 PGGVAIIVECLTD 100 (234)
T ss_dssp TTTEEEEEEEEES
T ss_pred CCCcEEEEEEeCC
Confidence 4555555555444
No 134
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.22 E-value=18 Score=25.50 Aligned_cols=73 Identities=12% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCC-chhhhhh-hhhhhhcccccCceecCHHHHH----HHHHHcCCc
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQD-KESMETQ-LCFDILMVSLFRGKERSVDDWK----KLFLAAGFS 82 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~-~~~~~~~-~~~dl~ml~~~~g~~rt~~e~~----~ll~~aGf~ 82 (100)
+++++-+.++.++|.. |+|-.+++-. .+.+ ....+.+ .+.+..++...-.+.|+.+||+ .++.+||.+
T Consensus 14 ~~ai~hi~ri~RvL~~--~~Gh~LLvG~----~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~ 87 (268)
T PF12780_consen 14 DEAIEHIARISRVLSQ--PRGHALLVGV----GGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIK 87 (268)
T ss_dssp HHHHHHHHHHHHHHCS--TTEEEEEECT----TTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcC--CCCCeEEecC----CCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhcc
Confidence 3577778888999985 7898886542 2222 1121222 2334444444445667877775 556788988
Q ss_pred eeEEE
Q 040309 83 HYKIT 87 (100)
Q Consensus 83 ~~~v~ 87 (100)
...++
T Consensus 88 ~~~~v 92 (268)
T PF12780_consen 88 GKPTV 92 (268)
T ss_dssp -S-EE
T ss_pred CCCeE
Confidence 76653
No 135
>PRK04457 spermidine synthase; Provisional
Probab=58.11 E-value=14 Score=25.84 Aligned_cols=20 Identities=15% Similarity=0.532 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~ 34 (100)
.+++++|++.|+ |||+++|.
T Consensus 157 ~efl~~~~~~L~---pgGvlvin 176 (262)
T PRK04457 157 QPFFDDCRNALS---SDGIFVVN 176 (262)
T ss_pred HHHHHHHHHhcC---CCcEEEEE
Confidence 799999999999 99999885
No 136
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=56.75 E-value=2.5 Score=19.94 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=9.6
Q ss_pred HHHHHHHHHc---CCceeE
Q 040309 70 DDWKKLFLAA---GFSHYK 85 (100)
Q Consensus 70 ~e~~~ll~~a---Gf~~~~ 85 (100)
+||..|+.+| |++..+
T Consensus 3 ~EW~~Li~eA~~~Gls~ee 21 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEE 21 (30)
T ss_dssp HHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHcCCCHHH
Confidence 5788888766 766544
No 137
>PRK09213 pur operon repressor; Provisional
Probab=56.56 E-value=39 Score=24.08 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.0
Q ss_pred HhCCCCCCCcEEEEEeeecCCCCC
Q 040309 20 EAIPSKDEGGKVIIIDMAIENQSQ 43 (100)
Q Consensus 20 ~al~~~~pgg~lli~e~v~~~~~~ 43 (100)
++++ +|.++||+|-++..+++
T Consensus 191 ~~l~---~G~rVLIVDDv~~TGgT 211 (271)
T PRK09213 191 RSLK---EGSRVLIVDDFMKAGGT 211 (271)
T ss_pred hhcC---CcCEEEEEeeecccCHh
Confidence 4677 79999999988865543
No 138
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=55.94 E-value=17 Score=19.79 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.7
Q ss_pred ceecCHHHHHHHHHHcCCcee
Q 040309 64 GKERSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~ 84 (100)
|..-+.++..++|+..||+..
T Consensus 16 G~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeEE
Confidence 667899999999999999874
No 139
>PRK00110 hypothetical protein; Validated
Probab=55.77 E-value=40 Score=23.64 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=10.2
Q ss_pred CCcEEEEEeeecCC
Q 040309 27 EGGKVIIIDMAIEN 40 (100)
Q Consensus 27 pgg~lli~e~v~~~ 40 (100)
|||.-+|+|...+.
T Consensus 92 P~GvaiiVe~lTDN 105 (245)
T PRK00110 92 PGGVAIIVEALTDN 105 (245)
T ss_pred CCCeEEEEEEecCC
Confidence 67777888877654
No 140
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=55.29 E-value=16 Score=27.37 Aligned_cols=25 Identities=16% Similarity=0.378 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
.+||+++.+.++ |||+|+...+.+.
T Consensus 364 ~~iL~~a~~~lk---pgG~lvystcsi~ 388 (434)
T PRK14901 364 AELLESLAPLLK---PGGTLVYATCTLH 388 (434)
T ss_pred HHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 689999999999 9999999887654
No 141
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=54.38 E-value=13 Score=23.99 Aligned_cols=23 Identities=9% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
-..++++.+.+.|+ |||+++++-
T Consensus 118 ~~~~~i~~a~~~Lk---~~G~l~lv~ 140 (170)
T PF05175_consen 118 LLRDFIEQARRYLK---PGGRLFLVI 140 (170)
T ss_dssp HHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred hHHHHHHHHHHhcc---CCCEEEEEe
Confidence 46889999999999 999997643
No 142
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=54.32 E-value=37 Score=24.16 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=15.5
Q ss_pred HhCCCCCCCcEEEEEeeecCCCCC
Q 040309 20 EAIPSKDEGGKVIIIDMAIENQSQ 43 (100)
Q Consensus 20 ~al~~~~pgg~lli~e~v~~~~~~ 43 (100)
++++ +|.|++|+|-++..+++
T Consensus 189 ~~l~---~G~rVLIVDDv~~TGgT 209 (268)
T TIGR01743 189 RSLK---TGSKVLIIDDFMKAGGT 209 (268)
T ss_pred hhCC---CcCEEEEEeeecccCHH
Confidence 4667 78899999988865443
No 143
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=54.30 E-value=17 Score=21.54 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCC-CcEEEEEee
Q 040309 7 NDEESVKLLKKCKEAIPSKDE-GGKVIIIDM 36 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~p-gg~lli~e~ 36 (100)
+|+++.++++.+.+++..-.+ +|+++|.+.
T Consensus 63 ~d~~v~~iv~~I~~~~~tg~~GdGkIfV~~V 93 (102)
T PF00543_consen 63 PDEDVEEIVEAISEAARTGEPGDGKIFVSPV 93 (102)
T ss_dssp EGGGHHHHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred CHHhHHHHHHHHHHhccCCCCCCEEEEEEEh
Confidence 467778888888777663213 389988874
No 144
>PRK10556 hypothetical protein; Provisional
Probab=54.20 E-value=18 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHcCCceeEEEe
Q 040309 68 SVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~ 88 (100)
.++|..+.|+.|||+..-|.+
T Consensus 4 RPDEVArVLe~aGF~~D~vt~ 24 (111)
T PRK10556 4 RPDEVARVLEKAGFTVDVVTQ 24 (111)
T ss_pred ChHHHHHHHHhcCceEEEeec
Confidence 467999999999999887754
No 145
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.69 E-value=16 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.3
Q ss_pred cCceecCHHHHHHHHHHcCCceeEE
Q 040309 62 FRGKERSVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 62 ~~g~~rt~~e~~~ll~~aGf~~~~v 86 (100)
.||.++...+|++++++.|++..-.
T Consensus 5 VGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 5 VGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred EcCCcccHHHHHHHHHHcCCEEEEE
Confidence 4888999999999999999998765
No 146
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=53.52 E-value=10 Score=27.55 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
+.....|.++.+.|+ |||||+|+-+..
T Consensus 218 ~~L~~~L~~a~~~L~---~gGrl~VISFHS 244 (310)
T PF01795_consen 218 EELERGLEAAPDLLK---PGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHHHHHHEE---EEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHhc---CCcEEEEEEecc
Confidence 346788999999999 999999998754
No 147
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=53.51 E-value=16 Score=23.86 Aligned_cols=57 Identities=11% Similarity=0.313 Sum_probs=36.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCce
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 83 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~ 83 (100)
.||......++.+++.+.++ ||+.||++|. +.. . .. ......+-..|++.||+.
T Consensus 131 ~D~~~~~~~~i~~~~~~~~~---~g~Iil~Hd~---~~~-~----~t---------------~~~l~~~i~~l~~~Gy~~ 184 (191)
T TIGR02764 131 RDWKNPGVESIVDRVVKNTK---PGDIILLHAS---DSA-K----QT---------------VKALPTIIKKLKEKGYEF 184 (191)
T ss_pred CccCCCCHHHHHHHHHhcCC---CCCEEEEeCC---CCc-H----hH---------------HHHHHHHHHHHHHCCCEE
Confidence 46766666788888888888 8888888871 111 0 00 012345667777888887
Q ss_pred eEE
Q 040309 84 YKI 86 (100)
Q Consensus 84 ~~v 86 (100)
+.+
T Consensus 185 vtl 187 (191)
T TIGR02764 185 VTI 187 (191)
T ss_pred EEH
Confidence 765
No 148
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=53.34 E-value=7.2 Score=18.85 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=14.3
Q ss_pred eecCHHHHHHHHHHcC
Q 040309 65 KERSVDDWKKLFLAAG 80 (100)
Q Consensus 65 ~~rt~~e~~~ll~~aG 80 (100)
++|....|+++|-+||
T Consensus 18 K~rv~kAWRNiFvqag 33 (34)
T PF13137_consen 18 KYRVDKAWRNIFVQAG 33 (34)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 6788899999999998
No 149
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=52.78 E-value=21 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMA 37 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v 37 (100)
.+..++|.++-+.++ ||..|||+|.-
T Consensus 219 ~kTt~FLl~Lt~~~~---~GslLLVvDSp 244 (315)
T PF11312_consen 219 SKTTKFLLRLTDICP---PGSLLLVVDSP 244 (315)
T ss_pred HHHHHHHHHHHhhcC---CCcEEEEEcCC
Confidence 457899999999999 99999999963
No 150
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=52.43 E-value=25 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.610 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
.+..+++++.+.++ .||.+|++|+-.+.
T Consensus 172 ~~~~~l~~l~~~~~---~~g~~l~iDYG~~~ 199 (252)
T PF02636_consen 172 GALQWLEQLAERLP---KGGALLIIDYGYPA 199 (252)
T ss_dssp CHHHHHHHHHHHCC---C-EEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHh---hCCEEEEEeCCCCC
Confidence 47889999999999 56999999998743
No 151
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=52.29 E-value=28 Score=24.40 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCC------CCCchhhhhhhhhhhhcccccCceec--CHHHHHHHHHHcCCce
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQ------SQDKESMETQLCFDILMVSLFRGKER--SVDDWKKLFLAAGFSH 83 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~~------~~~~~~~~~~~~~dl~ml~~~~g~~r--t~~e~~~ll~~aGf~~ 83 (100)
-++|+.++.++.+ .+||+++.= ++|-- ...-+. +..-. ...+|+.+ -.+.+-++|+.+||.+
T Consensus 186 ~kLL~Di~~vl~p--sngrvivaL-VLP~~hYVE~N~~g~~~-rPdn~------Le~~Gr~~ee~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 186 FKLLEDIHLVLAP--SNGRVIVAL-VLPYMHYVETNTSGLPL-RPDNL------LENNGRSFEEEVARFMELLRNCGYRV 255 (288)
T ss_pred HHHHHHHHHHhcc--CCCcEEEEE-EecccceeecCCCCCcC-CchHH------HHhcCccHHHHHHHHHHHHHhcCchh
Confidence 6888999999992 388877653 33311 111000 11111 12345522 2233568899999988
Q ss_pred eEEEec
Q 040309 84 YKITPI 89 (100)
Q Consensus 84 ~~v~~~ 89 (100)
..-.++
T Consensus 256 eawTrl 261 (288)
T KOG3987|consen 256 EAWTRL 261 (288)
T ss_pred hhhhcC
Confidence 765443
No 152
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=52.13 E-value=20 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~ 34 (100)
..+++.+++.|+ |||++++.
T Consensus 122 ~~~~~~~~~~Lk---pgG~lvi~ 141 (181)
T TIGR00138 122 NVLLELTLNLLK---VGGYFLAY 141 (181)
T ss_pred HHHHHHHHHhcC---CCCEEEEE
Confidence 457888899999 99999876
No 153
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=52.10 E-value=38 Score=19.76 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=36.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhh-hh--cc-c-ccCceecCHHHHHHHHHHc
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD-IL--MV-S-LFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~d-l~--ml-~-~~~g~~rt~~e~~~ll~~a 79 (100)
.-+|+++.+++.-.+=.++ ...|.+.----..-+.. +....++ .+ |. - .+-+..|+.+|-.+++++.
T Consensus 18 ~l~~~e~lr~ia~~Rl~~P----~a~I~la~gr~~~~~~~----~~~~~~sg~n~~~~G~ylt~~g~~~~~~d~~~i~~l 89 (93)
T PF06968_consen 18 PLSDEEFLRIIAAFRLLLP----EAGIRLAGGREALLRDL----QPLTFMSGANSIMVGGYLTTSGNRSVDEDIEMIEKL 89 (93)
T ss_dssp ---HHHHHHHHHHHHHHST----TSEEEEECCHHHCSCCH----HHHHHCCT--EEE-CSBTSSSCTSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCC----CcceEeecCccccCHHH----HHHHHhcccceeEECCccccCCCCCHHHHHHHHHHc
Confidence 4578999999998887777 45554443211101110 0011111 00 10 0 1224568999999999999
Q ss_pred CCc
Q 040309 80 GFS 82 (100)
Q Consensus 80 Gf~ 82 (100)
||+
T Consensus 90 G~~ 92 (93)
T PF06968_consen 90 GLE 92 (93)
T ss_dssp T-E
T ss_pred CCC
Confidence 986
No 154
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=52.03 E-value=20 Score=19.79 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=16.5
Q ss_pred ceecCHHHHHHHHHHcCCceeEE
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v 86 (100)
|...+.++..++|+..||+....
T Consensus 16 G~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp TS---HHHHHHHHHHTT-EEEE-
T ss_pred CCCCCHHHHHHHHHHCCCEEEEC
Confidence 66889999999999999998774
No 155
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=51.90 E-value=20 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
...||..|.+.|+ |||||++.=..+
T Consensus 114 i~~ile~~~~~l~---~ggrlV~naitl 138 (187)
T COG2242 114 IEEILEAAWERLK---PGGRLVANAITL 138 (187)
T ss_pred HHHHHHHHHHHcC---cCCeEEEEeecH
Confidence 4689999999999 899998765544
No 156
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=51.03 E-value=27 Score=20.24 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.3
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEec
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
+-|.++.+.++-|++.||+++.....
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCCc
Confidence 45678889999999999999887543
No 157
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=50.62 E-value=12 Score=21.09 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=14.2
Q ss_pred CceecCHHHHHHHHHHcCCceeE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
+....|.+|..+.|++.||.+.+
T Consensus 16 ~~~i~sQ~eL~~~L~~~Gi~vTQ 38 (70)
T PF01316_consen 16 EHEISSQEELVELLEEEGIEVTQ 38 (70)
T ss_dssp HS---SHHHHHHHHHHTT-T--H
T ss_pred HCCcCCHHHHHHHHHHcCCCcch
Confidence 34567999999999999988643
No 158
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=50.55 E-value=41 Score=18.35 Aligned_cols=28 Identities=11% Similarity=-0.065 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHcCCceeEEEecCCcceE
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILGVRSL 95 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~~~~v 95 (100)
+.++..+|+++.|+++..+...++.+.+
T Consensus 38 s~~di~~~~~~~g~~~~~~~~~~~~~~~ 65 (69)
T cd03423 38 TTRDIPKFCTFLGHELLAQETEDEPYRY 65 (69)
T ss_pred hHHHHHHHHHHcCCEEEEEEEcCCEEEE
Confidence 5667888999999999887765554443
No 159
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=50.51 E-value=24 Score=24.71 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 040309 68 SVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v 86 (100)
+...|++.|+++||++.-.
T Consensus 217 dedswk~il~~~G~~v~~~ 235 (265)
T COG4822 217 DEDSWKNILEKNGFKVEVY 235 (265)
T ss_pred chHHHHHHHHhCCceeEEE
Confidence 5689999999999998443
No 160
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=50.36 E-value=34 Score=22.85 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=35.6
Q ss_pred HhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhh--hhcccccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 20 EAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD--ILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 20 ~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~d--l~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
.+++ +|.|++|+|-++...++.... ...... -......-=-+|+...+++.|++.|+.+..+.+..
T Consensus 112 ~~l~---~G~rVLIVDDvvtTGgT~~a~--~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~~ 179 (191)
T TIGR01744 112 EFLS---DQDRVLIIDDFLANGQAAHGL--VDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVESLARIQ 179 (191)
T ss_pred HhCC---CcCEEEEEEehhccChHHHHH--HHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEEEEEEEe
Confidence 3566 799999999998765542100 000110 00000000124554567788888888877766543
No 161
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.26 E-value=85 Score=23.16 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=49.7
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcc---cccCc--eecCHHHHHHHHH
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV---SLFRG--KERSVDDWKKLFL 77 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml---~~~~g--~~rt~~e~~~ll~ 77 (100)
|---..+++..+++-+.+.++ .+-.++.|.+.+.++-+ ..|--+.- ....| ..-|.+..+.-|.
T Consensus 198 LvYM~pe~S~~Li~w~~~~F~----~a~fv~YEQi~~~D~Fg-------~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~ 266 (335)
T KOG2918|consen 198 LVYMEPEESANLIKWAASKFE----NAHFVNYEQINPNDRFG-------KVMLANLKRRGCPLHGLETYNSIESQRSRFL 266 (335)
T ss_pred heeccHHHHHHHHHHHHHhCC----cccEEEEeccCCCChHH-------HHHHHHHHhcCCCCchhhhcccHHHHHHHHH
Confidence 334567888999999988877 78899999998654322 11100000 01122 2348888999999
Q ss_pred HcCCceeEEEe
Q 040309 78 AAGFSHYKITP 88 (100)
Q Consensus 78 ~aGf~~~~v~~ 88 (100)
++||+-+.+..
T Consensus 267 ~~Gw~~v~a~D 277 (335)
T KOG2918|consen 267 KAGWEYVIAVD 277 (335)
T ss_pred hcCCceeehhh
Confidence 99999988754
No 162
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=50.12 E-value=69 Score=25.21 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccC-ceecCHHHHHHHHHHc
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR-GKERSVDDWKKLFLAA 79 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~-g~~rt~~e~~~ll~~a 79 (100)
++.++|..+++.=. .-|.-.++|......... -......-+..+| |++++.++|++++.+.
T Consensus 415 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 476 (607)
T PRK11057 415 DAQKALSCIYRVNQ---RFGMGYVVEVLRGANNQR------IRDYGHDKLKVYGIGRDKSHEHWVSVIRQL 476 (607)
T ss_pred HHHHHHHHHHHhcC---CCCcceeeeeeeccCcch------hhhcccccCCccCcCCcCCHHHHHHHHHHH
Confidence 46788887776433 567778888777543321 1122333445567 9999999999998754
No 163
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=50.02 E-value=43 Score=18.35 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHcCCceeEEEecCCcce
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILGVRS 94 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~~~~ 94 (100)
+.++..+|+++.|+++..+...++.+.
T Consensus 38 s~~ni~~~~~~~g~~v~~~~~~~~~~~ 64 (69)
T cd03422 38 SINNIPIDARNHGYKVLAIEQSGPTIR 64 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCEEE
Confidence 456788899999999987766554433
No 164
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=49.72 E-value=1e+02 Score=22.90 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=45.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC---CC---CchhhhhhhhhhhhcccccCceecCHHHHHHHH--
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ---SQ---DKESMETQLCFDILMVSLFRGKERSVDDWKKLF-- 76 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~---~~---~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll-- 76 (100)
-|+|++ +.=++++.+++.. .|+++.|-=...... .. +++........+.. ...--++-|.+|..++.
T Consensus 76 l~~d~~-i~~~~~vt~avH~--~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~--~~~~pr~mt~~eI~~ii~~ 150 (363)
T COG1902 76 LWSDAQ-IPGLKRLTEAVHA--HGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGG--RRATPRELTEEEIEEVIED 150 (363)
T ss_pred cCChhH-hHHHHHHHHHHHh--cCCeEEEEeccCcccccccccCCCcccCCCccccccC--CCCCCccCCHHHHHHHHHH
Confidence 466766 8999999999993 456555432222200 00 00000000011110 11236777888888776
Q ss_pred --------HHcCCceeEEEecCC
Q 040309 77 --------LAAGFSHYKITPILG 91 (100)
Q Consensus 77 --------~~aGf~~~~v~~~~~ 91 (100)
++|||--++++-..+
T Consensus 151 f~~AA~rA~~AGFDgVEIH~AhG 173 (363)
T COG1902 151 FARAARRAKEAGFDGVEIHGAHG 173 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeeccc
Confidence 478999999986544
No 165
>PRK04280 arginine repressor; Provisional
Probab=49.62 E-value=17 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=18.8
Q ss_pred CceecCHHHHHHHHHHcCCceeE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
+-...|.+|+.+.|++.||.+.+
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCeeh
Confidence 44567999999999999998755
No 166
>PRK12378 hypothetical protein; Provisional
Probab=49.58 E-value=46 Score=23.21 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=9.2
Q ss_pred CCcEEEEEeeecCC
Q 040309 27 EGGKVIIIDMAIEN 40 (100)
Q Consensus 27 pgg~lli~e~v~~~ 40 (100)
|||.-+|+|...+.
T Consensus 89 PgGvaiiVe~lTDN 102 (235)
T PRK12378 89 PNGVMVIVECLTDN 102 (235)
T ss_pred CCCcEEEEEECCCC
Confidence 66777777766554
No 167
>PRK13605 endoribonuclease SymE; Provisional
Probab=49.42 E-value=8.2 Score=23.91 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=10.9
Q ss_pred HHHHHHcCCceeEE
Q 040309 73 KKLFLAAGFSHYKI 86 (100)
Q Consensus 73 ~~ll~~aGf~~~~v 86 (100)
-.||++|||..-.-
T Consensus 44 G~WLeeAGF~tG~~ 57 (113)
T PRK13605 44 GQWLEAAGFATGTA 57 (113)
T ss_pred chhHHhhCCCCCCe
Confidence 36999999986543
No 168
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=49.23 E-value=69 Score=21.34 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=31.2
Q ss_pred CCcEEEEEeeecCCCCCCchhhh----hh-hhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 27 EGGKVIIIDMAIENQSQDKESME----TQ-LCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~----~~-~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
+|-+++|+|-++...++.....+ .+ ...++..++ .|.. .+++.+++.|+++..+...
T Consensus 121 ~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlv-----dr~~-g~~~~l~~~gi~~~sl~~~ 182 (187)
T PRK13810 121 PEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVV-----DREE-GAEENLKEADVELVPLVSA 182 (187)
T ss_pred CcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEE-----ECCc-ChHHHHHHcCCcEEEEEEH
Confidence 79999999999876554311000 00 011111111 2332 5677778889877766543
No 169
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=49.20 E-value=17 Score=21.00 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=16.7
Q ss_pred CceecCHHHHHHHHHHcCCceeEEE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
.|...|.+++...|+..|++.+.-.
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~~~ 27 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVSNP 27 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-SS-
T ss_pred CCcccCHHHHHHHHHHcCCCcCCCC
Confidence 5788899999999999999988533
No 170
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=49.07 E-value=24 Score=31.09 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=23.0
Q ss_pred HHHHHHHcCCcee----EEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAGFSHY----KITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aGf~~~----~v~~~~~~~~vie~~p 100 (100)
++++++.+|+.+. +|.++....+|||+.|
T Consensus 1569 f~~if~~~gLd~~lfPYrV~aT~pGcGVIEviP 1601 (1803)
T KOG0902|consen 1569 FKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIP 1601 (1803)
T ss_pred HHHHHHHcCCceEEeeeeeeccCCCCceEEeCC
Confidence 5677789998754 5667777899999987
No 171
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=48.31 E-value=28 Score=25.20 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
.+.-+.+|++.+++.|+ +||.|.|+=.
T Consensus 241 ~~~~~~~~i~~A~~~L~---~gGeL~iVan 267 (300)
T COG2813 241 VHSLAQEIIAAAARHLK---PGGELWIVAN 267 (300)
T ss_pred hHHHHHHHHHHHHHhhc---cCCEEEEEEc
Confidence 34456799999999999 8999999876
No 172
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=48.10 E-value=21 Score=21.36 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCceeEE
Q 040309 69 VDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 69 ~~e~~~ll~~aGf~~~~v 86 (100)
.+-|+..|+++||++.-+
T Consensus 81 ~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 81 PDSWKSILEAAGIKVETV 98 (103)
T ss_pred chhHHHHHHHCCCeeEEE
Confidence 567999999999998754
No 173
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=47.98 E-value=13 Score=27.49 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=21.7
Q ss_pred cccCceec-----CHHHHHHHHHHcCCceeEEE
Q 040309 60 SLFRGKER-----SVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 60 ~~~~g~~r-----t~~e~~~ll~~aGf~~~~v~ 87 (100)
+.+.|.+| +.+.|+..++.|||+.+.+.
T Consensus 298 Va~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 298 VACEGEERVERHERLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred hhcccccccccccchhHHHHHHHhcCCeecCCC
Confidence 34556554 78999999999999987764
No 174
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=47.89 E-value=25 Score=21.53 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHcCCceeEEEe
Q 040309 68 SVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~ 88 (100)
.++|..+.|+.+||+..-+.+
T Consensus 4 rpdeva~vle~~gf~~d~v~~ 24 (111)
T PF09400_consen 4 RPDEVARVLEKAGFERDYVTD 24 (111)
T ss_dssp -HHHHHHHHHHTT-EEEEEET
T ss_pred ChHHHHHHHHhcCceEEEeec
Confidence 467999999999999887753
No 175
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=47.72 E-value=19 Score=26.59 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHHcCCceeEEE
Q 040309 67 RSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~~~~v~ 87 (100)
-.++|++.+++++||++++-.
T Consensus 241 vnE~evE~~~q~~G~~IVrPE 261 (368)
T COG4421 241 VNEEEVERLLQRSGLTIVRPE 261 (368)
T ss_pred hCHHHHHHHHHhcCcEEEech
Confidence 378999999999999997653
No 176
>PRK06852 aldolase; Validated
Probab=47.54 E-value=19 Score=26.09 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=25.7
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
.-||++++....+.|..+.++ ..||++|+=
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~sGr~~ivp 37 (304)
T PRK06852 8 PLDVPEEMREEYIENYLEITK---GTGRLMLFA 37 (304)
T ss_pred cCcCChhcChhHHHHHHHhhC---CCCCEEEEe
Confidence 348999999999999999999 788888864
No 177
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=47.44 E-value=39 Score=23.75 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=35.1
Q ss_pred CCcEEEEEeeecCCCCCCch-----hhhhh----------hhhhhhcccccCceecCHHHHHHHHHHcCCceeEEE
Q 040309 27 EGGKVIIIDMAIENQSQDKE-----SMETQ----------LCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~-----~~~~~----------~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
|||.-+|+|++.+...+... +.+.+ .+|+=.=.+...+...+.+++...+-+||-..+...
T Consensus 92 P~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l~e~~ieagaeDv~~~ 167 (241)
T COG0217 92 PGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGAEDVEED 167 (241)
T ss_pred CCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEeccEEEEECCCCCCHHHHHHHHHHCCchhhhcC
Confidence 89999999998875433210 00111 111111122334445788888888888888776544
No 178
>PRK03612 spermidine synthase; Provisional
Probab=47.43 E-value=19 Score=27.85 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=15.2
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~ 34 (100)
.++++++++.|+ |||.+++.
T Consensus 395 ~ef~~~~~~~L~---pgG~lv~~ 414 (521)
T PRK03612 395 VEFYRLLKRRLA---PDGLLVVQ 414 (521)
T ss_pred HHHHHHHHHhcC---CCeEEEEe
Confidence 357888888888 78887664
No 179
>PRK11018 hypothetical protein; Provisional
Probab=47.33 E-value=52 Score=18.57 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHcCCceeEEEecCCcce
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILGVRS 94 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~~~~ 94 (100)
+.++..+|+++.|+++..+....+.+.
T Consensus 47 a~~di~~~~~~~G~~v~~~~~~~g~~~ 73 (78)
T PRK11018 47 SINNIPLDARNHGYTVLDIQQDGPTIR 73 (78)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCeEE
Confidence 567888999999999987766554433
No 180
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=47.31 E-value=19 Score=21.33 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=20.5
Q ss_pred hhcccccCceecCHHHHHHHHHHcCCcee
Q 040309 56 ILMVSLFRGKERSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 56 l~ml~~~~g~~rt~~e~~~ll~~aGf~~~ 84 (100)
......+|+..+|.+++.+-|+..||.+.
T Consensus 31 ~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 31 KPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp SEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred CCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 44556678888899999999999998853
No 181
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=46.99 E-value=32 Score=24.51 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=19.3
Q ss_pred ecCHHHHHHHHHHcCCceeEEEe
Q 040309 66 ERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
.-+.+|+.+++++|||+.++.-+
T Consensus 282 ~~~~~~l~~~~~~~g~~~~~r~~ 304 (309)
T TIGR00423 282 GLTVEELIEAIKDAGRVPAQRDT 304 (309)
T ss_pred CCCHHHHHHHHHHcCCCeeecCC
Confidence 45899999999999999877543
No 182
>COG1438 ArgR Arginine repressor [Transcription]
Probab=46.74 E-value=20 Score=23.34 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=18.1
Q ss_pred CceecCHHHHHHHHHHcCCceeE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
.-+-.|.+|..+.|++.||++.+
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~vTQ 39 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEVTQ 39 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeEeh
Confidence 45667888999999999888654
No 183
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=46.67 E-value=13 Score=21.81 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
....+++++.+.|+ |||.+.++
T Consensus 93 ~~~~~~~~~~~~L~---~gG~~~~~ 114 (117)
T PF13659_consen 93 LYSRFLEAAARLLK---PGGVLVFI 114 (117)
T ss_dssp HHHHHHHHHHHHEE---EEEEEEEE
T ss_pred HHHHHHHHHHHHcC---CCeEEEEE
Confidence 35789999999999 89998875
No 184
>PRK15450 signal transduction protein PmrD; Provisional
Probab=46.63 E-value=14 Score=21.59 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=16.8
Q ss_pred ccCceecCHHHHHHHHHHcC
Q 040309 61 LFRGKERSVDDWKKLFLAAG 80 (100)
Q Consensus 61 ~~~g~~rt~~e~~~ll~~aG 80 (100)
....++|+.+||.++.+.+|
T Consensus 66 ii~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 66 ILSASCYSPDEWERQCKKAG 85 (85)
T ss_pred EEeccccCHHHHHHHhccCC
Confidence 44689999999999988765
No 185
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=46.37 E-value=34 Score=25.60 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
.++|+++.+.|+ |||++++..+.+..
T Consensus 352 ~~iL~~a~~~Lk---pGG~lvystcs~~~ 377 (427)
T PRK10901 352 SEILDALWPLLK---PGGTLLYATCSILP 377 (427)
T ss_pred HHHHHHHHHhcC---CCCEEEEEeCCCCh
Confidence 579999999999 99999998875543
No 186
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=45.81 E-value=48 Score=24.10 Aligned_cols=30 Identities=27% Similarity=0.425 Sum_probs=23.3
Q ss_pred HHHHHHHHcCC----ceeEEEecCCcceEEEEeC
Q 040309 71 DWKKLFLAAGF----SHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 71 e~~~ll~~aGf----~~~~v~~~~~~~~vie~~p 100 (100)
-+..+++++|+ +..+|.+++...++||++|
T Consensus 76 lm~~i~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ 109 (311)
T cd05167 76 LFKNIFQSAGLDLYLFPYRVVATGPGCGVIEVVP 109 (311)
T ss_pred HHHHHHHHCCCCeEeEEEeEEecCCCceEEEEeC
Confidence 45677788885 4567888888899999986
No 187
>PRK09662 GspL-like protein; Provisional
Probab=45.27 E-value=20 Score=25.80 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCceeEEEec
Q 040309 70 DDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 70 ~e~~~ll~~aGf~~~~v~~~ 89 (100)
+.|.++|+++|++..+++|-
T Consensus 8 q~wl~~l~~agl~~~~~vPD 27 (286)
T PRK09662 8 RNIAQWLQANGITRATVAPD 27 (286)
T ss_pred HHHHHHHHHcCCcceeecCC
Confidence 57999999999999999874
No 188
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=45.16 E-value=57 Score=19.28 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHcCCceeEEE
Q 040309 68 SVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~ 87 (100)
|..+..+.|+++|.+.+.+.
T Consensus 103 Tl~~~~~~L~~~g~~~v~~~ 122 (125)
T PF00156_consen 103 TLKEAIELLKEAGAKVVGVA 122 (125)
T ss_dssp HHHHHHHHHHHTTBSEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 77888889999998877653
No 189
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.08 E-value=49 Score=17.63 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHcCCceeEEEecCCc
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILGV 92 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~~ 92 (100)
+..+...|+++.|++...+...++.
T Consensus 38 ~~~~i~~~~~~~g~~~~~~~~~~~~ 62 (69)
T cd00291 38 AVEDIPAWAKETGHEVLEVEEEGGV 62 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeCCE
Confidence 6778899999999998877665543
No 190
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=44.95 E-value=42 Score=17.59 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=16.4
Q ss_pred cCHHHHHHHHHHcCCceeEEE
Q 040309 67 RSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~~~~v~ 87 (100)
.+.++..+.|+++||+.....
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~~ 29 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVVE 29 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEEE
Confidence 588999999999999665554
No 191
>PRK01581 speE spermidine synthase; Validated
Probab=44.76 E-value=24 Score=26.39 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~ 34 (100)
.++++.|++.|+ |||.+++.
T Consensus 248 ~EFy~~~~~~Lk---PgGV~V~Q 267 (374)
T PRK01581 248 SELFARIATFLT---EDGAFVCQ 267 (374)
T ss_pred HHHHHHHHHhcC---CCcEEEEe
Confidence 668889999999 88887665
No 192
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=44.56 E-value=27 Score=27.77 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=33.2
Q ss_pred cccCceecCHHHHHHHHHHcCCceeEEEecCCcc----eEEEEeC
Q 040309 60 SLFRGKERSVDDWKKLFLAAGFSHYKITPILGVR----SLIEAYP 100 (100)
Q Consensus 60 ~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~~~~----~vie~~p 100 (100)
...-|.+.+.+++...|.+.||+.+..+...|-+ ++|+++|
T Consensus 160 ~l~~G~~i~~~~l~~~L~~~GY~r~~~v~~~GeFsvRG~IiDIfp 204 (652)
T PRK05298 160 SLRVGQEIDRRELLRRLVDLQYERNDIDFQRGTFRVRGDVIEIFP 204 (652)
T ss_pred EEeCCCCcCHHHHHHHHHHcCCcccCccCCCceEEEECCEEEEeC
Confidence 3446899999999999999999999987666543 5777776
No 193
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=44.25 E-value=23 Score=24.95 Aligned_cols=29 Identities=14% Similarity=0.396 Sum_probs=22.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
.||.......|.+++.+.+. ||+.||++|
T Consensus 210 ~Dw~~~~~~~i~~~v~~~~~---~G~IILmHd 238 (268)
T TIGR02873 210 IDWKNPSPSVMVNRVLSKIH---PGAMVLMHP 238 (268)
T ss_pred CCCCCCCHHHHHHHHHhcCC---CCcEEEEcC
Confidence 57865566778888888788 788888876
No 194
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=44.24 E-value=39 Score=24.27 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
--.++|+++++.|+ |||++++.
T Consensus 272 l~~~~l~~~~r~Lk---~gG~lv~~ 293 (329)
T TIGR01177 272 LYERSLEEFHEVLK---SEGWIVYA 293 (329)
T ss_pred HHHHHHHHHHHHcc---CCcEEEEE
Confidence 35789999999999 89998876
No 195
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=43.98 E-value=94 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCceeEEEecCCcceEEE
Q 040309 69 VDDWKKLFLAAGFSHYKITPILGVRSLIE 97 (100)
Q Consensus 69 ~~e~~~ll~~aGf~~~~v~~~~~~~~vie 97 (100)
.++..+.+++ ||++.+....+++.+++-
T Consensus 265 ~~~v~~a~~~-g~~~~~~~~~~~W~~l~~ 292 (295)
T PF06325_consen 265 EDEVIEAYKQ-GFELVEEREEGEWVALVF 292 (295)
T ss_dssp HHHHHHHHHT-TEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHC-CCEEEEEEEECCEEEEEE
Confidence 3456667766 999988887777666553
No 196
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=43.85 E-value=54 Score=18.62 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
....++++.+.++ |+|.+++.+.....
T Consensus 134 ~~~~~~~~~~~l~---~~g~~~~~~~~~~~ 160 (257)
T COG0500 134 PAKALRELLRVLK---PGGRLVLSDLLRDG 160 (257)
T ss_pred HHHHHHHHHHhcC---CCcEEEEEeccCCC
Confidence 5788999999999 89999988876544
No 197
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=43.76 E-value=52 Score=20.73 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=18.9
Q ss_pred hhhhcccccCceecCHHHHHHHHHHcC----CceeEEEec
Q 040309 54 FDILMVSLFRGKERSVDDWKKLFLAAG----FSHYKITPI 89 (100)
Q Consensus 54 ~dl~ml~~~~g~~rt~~e~~~ll~~aG----f~~~~v~~~ 89 (100)
-|+.--+..+|+.++.++|+++|..+= ....++.+.
T Consensus 48 ~dIs~qv~~~G~k~~~e~WK~~~~~~~~~~~~~~~~~~~g 87 (127)
T PF05772_consen 48 GDISRQVEWNGRKLDPEDWKELFTAAFLIATGEEQRVVPG 87 (127)
T ss_dssp HHHHHH--BTTB---HHHHHHHHHHHH-----S--EEEE-
T ss_pred HHHHHHhHhcCccCCHHHHHHHHHHHHhhhccchhhhccC
Confidence 355544556899999999999998651 144455553
No 198
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=43.64 E-value=28 Score=25.45 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=23.7
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEecCCcceEEE
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKITPILGVRSLIE 97 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v~~~~~~~~vie 97 (100)
=-.+|..++.++|+++||..+ ....+...++|
T Consensus 93 LFiyTKp~~~~lFk~~GF~~i--~~~~~~ivlmE 124 (352)
T COG3053 93 LFIYTKPEYAALFKQCGFSEI--ASAENVIVLME 124 (352)
T ss_pred EEEEechhHHHHHHhCCceEe--eccCceEEEee
Confidence 456899999999999999873 34444455555
No 199
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=43.32 E-value=36 Score=24.39 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEE
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVII 33 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli 33 (100)
...+|++++.+.|+ |||++++
T Consensus 241 ~~~~i~~~a~~~L~---pgG~l~~ 261 (307)
T PRK11805 241 LVRRILAEAPDYLT---EDGVLVV 261 (307)
T ss_pred HHHHHHHHHHHhcC---CCCEEEE
Confidence 34789999999999 8998775
No 200
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.31 E-value=88 Score=21.49 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=31.3
Q ss_pred cEEEEEeeecCCCCCCchhhhhhhhhh-hhcccccCceecCHHHHHHHHHHcCCceeE
Q 040309 29 GKVIIIDMAIENQSQDKESMETQLCFD-ILMVSLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 29 g~lli~e~v~~~~~~~~~~~~~~~~~d-l~ml~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
+.+++.|.-.+.....+.......... ...-+..+|..||.++...+++ +|..-+-
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vi 219 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLAS-LNVHAAI 219 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEE
Confidence 577777765544333321111111111 1233455799999999999985 6866543
No 201
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=43.20 E-value=25 Score=19.30 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=12.2
Q ss_pred ecCHHHHHHHHHHcC
Q 040309 66 ERSVDDWKKLFLAAG 80 (100)
Q Consensus 66 ~rt~~e~~~ll~~aG 80 (100)
-+|.+||.+++++.|
T Consensus 14 Gk~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 14 GKTLDEWLALAREGG 28 (61)
T ss_pred CcCHHHHHHHHHHhC
Confidence 458899999998884
No 202
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=42.82 E-value=37 Score=23.94 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVII 33 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli 33 (100)
..++++++.+.|+ |||++++
T Consensus 230 ~~~il~~a~~~L~---~gG~l~~ 249 (284)
T TIGR03533 230 VRRILAEAADHLN---ENGVLVV 249 (284)
T ss_pred HHHHHHHHHHhcC---CCCEEEE
Confidence 4788999999999 8998763
No 203
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=42.61 E-value=29 Score=17.61 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.8
Q ss_pred ecCHHHHHHHHHHcCCcee
Q 040309 66 ERSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~ 84 (100)
..+.+++.++.++.||...
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFT 44 (49)
T ss_pred cCCHHHHHHHHHHcCCCCC
Confidence 4589999999999998764
No 204
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=42.31 E-value=35 Score=18.77 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.8
Q ss_pred HHcCCceeEEEec
Q 040309 77 LAAGFSHYKITPI 89 (100)
Q Consensus 77 ~~aGf~~~~v~~~ 89 (100)
+.|||.+.++.|.
T Consensus 48 ~~aGf~VtRiRP~ 60 (63)
T PHA00457 48 VPAGFVVTRIRPE 60 (63)
T ss_pred hccCcEEEEeccc
Confidence 4789999999874
No 205
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=42.10 E-value=59 Score=17.73 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHcCCceeEEEecCCcce
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILGVRS 94 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~~~~ 94 (100)
+.++..+|++..|+++..+...++.+.
T Consensus 38 a~~di~~~~~~~G~~~~~~~~~~~~~~ 64 (69)
T cd03420 38 FARDAQAWCKSTGNTLISLETEKGKVK 64 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCEEE
Confidence 456788999999999987766554443
No 206
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=42.07 E-value=67 Score=19.95 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCceeEEEecCCcceEEEE
Q 040309 70 DDWKKLFLAAGFSHYKITPILGVRSLIEA 98 (100)
Q Consensus 70 ~e~~~ll~~aGf~~~~v~~~~~~~~vie~ 98 (100)
...++-|.+|||++.++...++=...+-+
T Consensus 93 ~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a 121 (124)
T PF05430_consen 93 GAVRRALQQAGFEVEKVPGFGRKREMLRA 121 (124)
T ss_dssp HHHHHHHHHCTEEEEEEE-STTSSEEEEE
T ss_pred HHHHHHHHHcCCEEEEcCCCCCcchheEE
Confidence 45789999999999887766554444433
No 207
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=41.87 E-value=28 Score=24.15 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCCCCCcEEEEEe
Q 040309 14 LLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 14 iL~~~~~al~~~~pgg~lli~e 35 (100)
.+++++++|+ |||+++++.
T Consensus 163 ~~~e~~rvLk---pgG~li~~~ 181 (272)
T PRK11088 163 KAEELARVVK---PGGIVITVT 181 (272)
T ss_pred CHHHHHhhcc---CCCEEEEEe
Confidence 4678899999 999999864
No 208
>PLN02366 spermidine synthase
Probab=41.60 E-value=31 Score=24.84 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVII 33 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli 33 (100)
..++++.+++.|+ |||.+++
T Consensus 185 t~ef~~~~~~~L~---pgGvlv~ 204 (308)
T PLN02366 185 EKPFFESVARALR---PGGVVCT 204 (308)
T ss_pred HHHHHHHHHHhcC---CCcEEEE
Confidence 4577888888888 8888754
No 209
>PF11850 DUF3370: Protein of unknown function (DUF3370); InterPro: IPR021801 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 452 to 532 amino acids in length.
Probab=41.30 E-value=40 Score=25.73 Aligned_cols=76 Identities=14% Similarity=0.352 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHH-------hCCCCCCCcEEEEEeeecCCCCCCchhh------h--hhhhhhhhcccccCceec--CH
Q 040309 7 NDEESVKLLKKCKE-------AIPSKDEGGKVIIIDMAIENQSQDKESM------E--TQLCFDILMVSLFRGKER--SV 69 (100)
Q Consensus 7 ~d~~~~~iL~~~~~-------al~~~~pgg~lli~e~v~~~~~~~~~~~------~--~~~~~dl~ml~~~~g~~r--t~ 69 (100)
.+.-+..+|+.-++ .++ ||..-+++...+|-.+..++.. + ...-+.+.-+++..|.+| |.
T Consensus 149 GsRv~~dvLRg~rq~~~P~~i~Ip---Pg~~~mL~nlpIPv~gl~p~lNGRstllRl~S~Gpvy~AslA~~a~~~r~Ptl 225 (441)
T PF11850_consen 149 GSRVAGDVLRGRRQREFPAQIVIP---PGQSRMLLNLPIPVRGLDPPLNGRSTLLRLRSSGPVYMASLAMYAGSERPPTL 225 (441)
T ss_pred cHHHHHHHHhccccccCCccEEEC---CCCceEEEeccccCCCCCCCCCcceeEEEEecCCcchHHHHHhhhhcccCCCH
Confidence 35556777777664 244 6777677776666543322210 0 001111222333345554 89
Q ss_pred HHHHHHHHHcCCceeE
Q 040309 70 DDWKKLFLAAGFSHYK 85 (100)
Q Consensus 70 ~e~~~ll~~aGf~~~~ 85 (100)
+||+++|....+.--+
T Consensus 226 ~eW~~lL~~G~La~pR 241 (441)
T PF11850_consen 226 EEWQALLDNGRLAGPR 241 (441)
T ss_pred HHHHHHHhcCCcCCcc
Confidence 9999999988876433
No 210
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=41.10 E-value=28 Score=26.01 Aligned_cols=27 Identities=11% Similarity=0.416 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
-.+||++..+.|+ +||+|+=.-+-+..
T Consensus 275 Q~~iL~rgl~lLk---~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 275 QLRILRRGLRLLK---VGGRLVYSTCSLNP 301 (375)
T ss_pred HHHHHHHHHHHhc---CCCEEEEeccCCCc
Confidence 3689999999999 99998877666553
No 211
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=40.88 E-value=30 Score=17.96 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.5
Q ss_pred HHHHHHcCCceeEEE
Q 040309 73 KKLFLAAGFSHYKIT 87 (100)
Q Consensus 73 ~~ll~~aGf~~~~v~ 87 (100)
.++|+..||+++.|-
T Consensus 24 ~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 24 HRHLKALGYKVISIP 38 (58)
T ss_pred HHHHHHCCCEEEEec
Confidence 678899999998873
No 212
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=40.79 E-value=21 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=15.1
Q ss_pred eecCHHHHHHHHHHcCCceeE
Q 040309 65 KERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 65 ~~rt~~e~~~ll~~aGf~~~~ 85 (100)
-.--.+||+.+|..+|.+..+
T Consensus 23 ~~glp~ew~~~l~~~~it~~~ 43 (59)
T PF00786_consen 23 FTGLPPEWEKLLKSSGITEEE 43 (59)
T ss_dssp EES--HHHHHHHHSCTTSHHH
T ss_pred cccCCHHHHhhccccCCCHHH
Confidence 346789999999999987544
No 213
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.63 E-value=1.3e+02 Score=21.43 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 13 KLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 13 ~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
.++--+...|. |||-+...--..++.+. .++.-+--.-++..-.+++++..||.++++.++
T Consensus 206 ~~~~~aa~~L~---~gGlfaFSvE~l~~~~~-------------f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 206 GLFAGAAGLLA---PGGLFAFSVETLPDDGG-------------FVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hHHHHHHHhcC---CCceEEEEecccCCCCC-------------eecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 45666777888 88877665444443321 111111223456667799999999999998654
No 214
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=40.53 E-value=1.2e+02 Score=20.74 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhh-hhhcccccCceecCHHHHHHHHHHcCCceeE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF-DILMVSLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~-dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
..++++++.+. . +.+++.|.-......++......... ...+-+..+|..||.++.+.+++ +|+.-+-
T Consensus 148 ~~~~~~~~~~~-~-----~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vi 216 (233)
T cd04723 148 PEELLRRLAKW-P-----EELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKK-LGASGAL 216 (233)
T ss_pred HHHHHHHHHHh-C-----CeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEE
Confidence 45556666555 4 57888886554433332111111111 12334556899999999999987 5755443
No 215
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=39.94 E-value=51 Score=18.46 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 040309 68 SVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v 86 (100)
+..|..+.|+.-||..++.
T Consensus 8 ~~ke~ik~Le~~Gf~~vrq 26 (66)
T COG1724 8 KAKEVIKALEKDGFQLVRQ 26 (66)
T ss_pred CHHHHHHHHHhCCcEEEEe
Confidence 6789999999999999876
No 216
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=39.35 E-value=34 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
..++++++++.|+ |||.+++.
T Consensus 165 ~~ef~~~~~~~L~---pgG~lv~~ 185 (270)
T TIGR00417 165 TKEFYELLKKALN---EDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHHHhC---CCcEEEEc
Confidence 4678899999999 99998886
No 217
>PRK03094 hypothetical protein; Provisional
Probab=39.34 E-value=61 Score=18.82 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.3
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEe
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
|-|.++.+.++-|++-||+++.+..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCc
Confidence 5577889999999999999988754
No 218
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=39.17 E-value=53 Score=22.29 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=24.3
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEecCC
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYKITPILG 91 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~v~~~~~ 91 (100)
|=+.-|.++|+++.++.|+++.+...+.+
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 34566999999999999999999877654
No 219
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=39.08 E-value=49 Score=25.07 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=27.1
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
.|||=++......+++....+. |||.|+|+|.-.|
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~---~gg~lVivErGtp 229 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLA---PGGHLVIVERGTP 229 (484)
T ss_pred hccccCcchHHHHHHHHHHhcc---CCCeEEEEeCCCc
Confidence 3556666666668888888888 8999999997655
No 220
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=39.01 E-value=41 Score=25.35 Aligned_cols=25 Identities=8% Similarity=0.363 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
.+||+++.+.|+ |||+|+..-+.+.
T Consensus 346 ~~iL~~a~~~Lk---pGG~LvYsTCs~~ 370 (431)
T PRK14903 346 LRIVSQAWKLLE---KGGILLYSTCTVT 370 (431)
T ss_pred HHHHHHHHHhcC---CCCEEEEEECCCC
Confidence 678999999999 9999877766554
No 221
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=38.85 E-value=59 Score=19.97 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=33.2
Q ss_pred CCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeE
Q 040309 27 EGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
|++.++-+...++.+....|....+..-=+..|...++..++..++...++..|.....
T Consensus 8 ~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~ 66 (149)
T PF00675_consen 8 PGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNA 66 (149)
T ss_dssp TTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccce
Confidence 45555555655544332222111222111223455568888999999999999977643
No 222
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=38.35 E-value=50 Score=24.78 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
.++|+++.+.|+ |||+|+..-+.+
T Consensus 359 ~~iL~~a~~~Lk---pGG~lvystcs~ 382 (444)
T PRK14902 359 LEILESVAQYLK---KGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHcC---CCCEEEEEcCCC
Confidence 578999999999 999998765544
No 223
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.20 E-value=40 Score=17.98 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.5
Q ss_pred ccccCChHHHHHHHHHHHHh
Q 040309 2 ILHNWNDEESVKLLKKCKEA 21 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~a 21 (100)
+++++++++..++|+.++++
T Consensus 5 l~~g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 5 LFSGFSGEELDKFLDALRKA 24 (58)
T ss_pred EECCCCHHHHHHHHHHHHHc
Confidence 57899999999999998874
No 224
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=37.87 E-value=84 Score=27.23 Aligned_cols=66 Identities=15% Similarity=0.030 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccC-ceecCHHHHHHHHHHc---CCce
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR-GKERSVDDWKKLFLAA---GFSH 83 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~-g~~rt~~e~~~ll~~a---Gf~~ 83 (100)
+++.++|+-+++.=. .-|.-.|+|.+...... .........+..+| |+.++.++|+.++... ||=.
T Consensus 878 ~~Aq~~ls~V~~~~~---~fg~~~iidvlrGs~~~------~i~~~~~d~l~~~G~gk~~s~~~~~~li~~Li~~g~L~ 947 (1195)
T PLN03137 878 EIARQLVELVKLTGE---RFSSAHILEVYRGSLNQ------YVKKHRHETLSLHGAGKHLSKGEASRILHYLVTEDILA 947 (1195)
T ss_pred HHHHHHHHHHHHhcc---CcchhheehhhhccccH------HHHHhCcccccccCccccCCHHHHHHHHHHHHHcCCce
Confidence 457888877766433 46777888877653221 11122334455667 9999999999998854 7643
No 225
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=37.81 E-value=47 Score=19.51 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 040309 68 SVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v 86 (100)
-+.|..++|.+.||.+++.
T Consensus 2 ~Erel~~~L~~~Gf~v~R~ 20 (88)
T PF01870_consen 2 FERELVKILWERGFAVVRA 20 (88)
T ss_dssp HHHHHHHHHHHTT-EEEEB
T ss_pred HHHHHHHHHHhCCcEEEEe
Confidence 3578999999999998765
No 226
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=37.49 E-value=71 Score=22.94 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=23.0
Q ss_pred HHHHHHHHcCC----ceeEEEecCCcceEEEEeC
Q 040309 71 DWKKLFLAAGF----SHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 71 e~~~ll~~aGf----~~~~v~~~~~~~~vie~~p 100 (100)
-+..+++++|. +..+|.+++...++||++|
T Consensus 55 l~~~i~~~~~l~l~l~~Y~vi~~s~~~GlIE~V~ 88 (289)
T cd00893 55 ELQKIFELMFLDLWLNPYLVLPVSKTGGIIEFIP 88 (289)
T ss_pred HHHHHHHHcCCCceeEEEEEEECCCCceeEEEeC
Confidence 35677777764 4567888888899999986
No 227
>PRK11524 putative methyltransferase; Provisional
Probab=37.27 E-value=49 Score=23.28 Aligned_cols=20 Identities=15% Similarity=0.551 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~ 34 (100)
...|+.+++.|+ |||.++|+
T Consensus 60 ~~~l~~~~rvLK---~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLK---KQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhC---CCcEEEEE
Confidence 578899999999 89999875
No 228
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=37.09 E-value=74 Score=23.77 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=23.3
Q ss_pred HHHHHHHHcCC----ceeEEEecCCcceEEEEeC
Q 040309 71 DWKKLFLAAGF----SHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 71 e~~~ll~~aGf----~~~~v~~~~~~~~vie~~p 100 (100)
-+..+++++|+ +..+|.+++...++||++|
T Consensus 121 lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ 154 (366)
T cd05175 121 IMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVR 154 (366)
T ss_pred HHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcC
Confidence 35677788885 4567788888899999986
No 229
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=36.79 E-value=28 Score=22.73 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
....++.+++.|+ |||.++|.
T Consensus 35 ~~~~~~~~~rvLk---~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLK---PGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEE---EEEEEEEE
T ss_pred HHHHHHHHHhhcC---CCeeEEEE
Confidence 6788999999999 89988775
No 230
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=36.52 E-value=67 Score=20.77 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 8 DEESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 8 d~~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
-+++.-+|.++...|+ +|+.|+|+--
T Consensus 81 K~e~~~lL~~l~~~L~---~g~~i~vVGE 106 (155)
T PF08468_consen 81 KAEAQYLLANLLSHLP---PGTEIFVVGE 106 (155)
T ss_dssp HHHHHHHHHHHHTTS----TT-EEEEEEE
T ss_pred HHHHHHHHHHHHHhCC---CCCEEEEEec
Confidence 3567889999999999 8999998864
No 231
>PRK05066 arginine repressor; Provisional
Probab=36.44 E-value=28 Score=22.64 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=19.3
Q ss_pred cCceecCHHHHHHHHHHcCCc-eeE
Q 040309 62 FRGKERSVDDWKKLFLAAGFS-HYK 85 (100)
Q Consensus 62 ~~g~~rt~~e~~~ll~~aGf~-~~~ 85 (100)
.+-.-.|.+|..+.|++.||. +.+
T Consensus 19 ~~~~I~tQeeL~~~L~~~Gi~~vTQ 43 (156)
T PRK05066 19 KEEKFGSQGEIVTALQEQGFDNINQ 43 (156)
T ss_pred hhCCCCCHHHHHHHHHHCCCCeecH
Confidence 456678999999999999998 443
No 232
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=36.27 E-value=75 Score=20.89 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCcEEEEEeeecCCCCCCchhhhh----h-hhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 27 EGGKVIIIDMAIENQSQDKESMET----Q-LCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~~----~-~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
+|-+++|+|-++...++-....+. + ...++..++ .|. +.+++.+++.|+.+..+.+.
T Consensus 106 ~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlv-----dr~-~~~~~~l~~~g~~v~sL~~~ 167 (176)
T PRK13812 106 EGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVV-----DRE-EGARENLADHDVELEALVTA 167 (176)
T ss_pred CcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEE-----ECC-cchHHHHHhcCCcEEEEEeH
Confidence 688999999888765543110000 0 011111111 122 45667778888877776654
No 233
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=36.15 E-value=43 Score=22.60 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=17.5
Q ss_pred ecCHHHHHHHHHHcCCceeEEE
Q 040309 66 ERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
....++|..-|+++||+..-.+
T Consensus 27 ~~A~~~Wn~~fe~~Gf~~a~~v 48 (197)
T cd04276 27 REGVLYWNKAFEKAGFKNAIIV 48 (197)
T ss_pred HHHHHHHHHHHHhcCCCccEEE
Confidence 3467899999999999976543
No 234
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=36.10 E-value=1.7e+02 Score=21.26 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCceeEEEecCCcceEE
Q 040309 70 DDWKKLFLAAGFSHYKITPILGVRSLI 96 (100)
Q Consensus 70 ~e~~~ll~~aGf~~~~v~~~~~~~~vi 96 (100)
+...+-++++||+++++.....+..++
T Consensus 270 ~~V~~a~~~~gf~v~~~~~~~eW~~i~ 296 (300)
T COG2264 270 ESVAEAYEQAGFEVVEVLEREEWVAIV 296 (300)
T ss_pred HHHHHHHHhCCCeEeEEEecCCEEEEE
Confidence 455667778899999887776665554
No 235
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=36.06 E-value=1.1e+02 Score=22.92 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCcEEEE----EeeecCCCCC-CchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcC
Q 040309 6 WNDEESVKLLKKCKEAIPSKDEGGKVII----IDMAIENQSQ-DKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 80 (100)
Q Consensus 6 w~d~~~~~iL~~~~~al~~~~pgg~lli----~e~v~~~~~~-~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aG 80 (100)
-++++..++++++...-- |.++-++ .++.++.... .+|....+..+...+.+.+ +..-....+.+.++.||
T Consensus 104 I~~~dv~~~~~~a~~~~~---~~~~~i~~~~p~~~~vD~~~~v~~P~g~~g~~l~~~v~lv~-~~~~~~~~~~~a~~~aG 179 (420)
T PRK09472 104 VTQEDVENVVHTAKSVRV---RDEHRILHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLIT-CHNDMAKNIVKAVERCG 179 (420)
T ss_pred eCHHHHHHHHHHhhccCC---CCCCEEEEEeceeEEECCCCCcCCCCCCcccEEEEEEEEEE-EchHHHHHHHHHHHHcC
Confidence 467888888888865322 3445333 3355554331 2232112222222333222 23345667778899999
Q ss_pred CceeEEEe
Q 040309 81 FSHYKITP 88 (100)
Q Consensus 81 f~~~~v~~ 88 (100)
|++..+..
T Consensus 180 l~v~~iv~ 187 (420)
T PRK09472 180 LKVDQLIF 187 (420)
T ss_pred CeEeeEEe
Confidence 99998864
No 236
>PRK00811 spermidine synthase; Provisional
Probab=35.99 E-value=44 Score=23.58 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
..++++.|++.|+ |||.+++.
T Consensus 170 t~ef~~~~~~~L~---~gGvlv~~ 190 (283)
T PRK00811 170 TKEFYENCKRALK---EDGIFVAQ 190 (283)
T ss_pred HHHHHHHHHHhcC---CCcEEEEe
Confidence 3678999999999 89987763
No 237
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=35.96 E-value=39 Score=20.16 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=18.5
Q ss_pred ecCHHHHHHHHHHcCCceeEEE
Q 040309 66 ERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
+.+.+|.+.|.+.+|++++..+
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~ 28 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTV 28 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEE
Confidence 4578899999999999998643
No 238
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=35.75 E-value=31 Score=16.87 Aligned_cols=17 Identities=0% Similarity=0.200 Sum_probs=13.3
Q ss_pred ccccCChHHHHHHHHHH
Q 040309 2 ILHNWNDEESVKLLKKC 18 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~ 18 (100)
|++|.+.+++.+|+.=+
T Consensus 18 Vfd~v~~~Ka~~im~lA 34 (36)
T PF06200_consen 18 VFDDVPPDKAQEIMLLA 34 (36)
T ss_pred EeCCCCHHHHHHHHHHh
Confidence 67788999998888643
No 239
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=35.37 E-value=41 Score=25.52 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.7
Q ss_pred cCceecCHHHHHHHHHHcCCceeE
Q 040309 62 FRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 62 ~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
+++......||.++|++||++-+-
T Consensus 49 Ftae~wDP~eWar~fK~aGAKyvi 72 (430)
T COG3669 49 FTAENWDPREWARLFKEAGAKYVI 72 (430)
T ss_pred cCcccCCHHHHHHHHHHcCCcEEE
Confidence 567888999999999999998653
No 240
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=35.34 E-value=35 Score=24.55 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=27.2
Q ss_pred CceecCHHHHHHHHHHcCCceeEEEecC-CcceEEE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYKITPIL-GVRSLIE 97 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~v~~~~-~~~~vie 97 (100)
.++..+.++.+..|+++||+.++.+.-. ..+++.-
T Consensus 283 ~S~Kfslq~irq~laa~gl~~v~~wtd~~qdf~~~l 318 (321)
T COG4301 283 ISRKFSLQAIRQQLAAAGLEPVQKWTDAIQDFGLSL 318 (321)
T ss_pred hhhhCCHHHHHHHHHhcCCeEeeehhhhhhhhhhhe
Confidence 4777899999999999999999987543 4455443
No 241
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=35.28 E-value=89 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 040309 68 SVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v 86 (100)
|..+-.++++++|.+++.+
T Consensus 123 Tl~~a~~~l~~~Ga~v~~~ 141 (173)
T TIGR00336 123 SILEAVEIIQAAGGQVAGV 141 (173)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 4444444555555444443
No 242
>PRK10689 transcription-repair coupling factor; Provisional
Probab=35.26 E-value=40 Score=28.86 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=33.7
Q ss_pred ccccCceecCHHHHHHHHHHcCCceeEEEecCCcc----eEEEEeC
Q 040309 59 VSLFRGKERSVDDWKKLFLAAGFSHYKITPILGVR----SLIEAYP 100 (100)
Q Consensus 59 l~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~~~~----~vie~~p 100 (100)
+....|.+...+++...|.++||+.+..+...|-+ +||+++|
T Consensus 128 ~~l~~G~~id~~~L~~~Lv~~GYer~~~V~~~GeFavRGgIIDIFp 173 (1147)
T PRK10689 128 LVMKKGQRLSRDALRAQLEQAGYRHVDQVMEHGEYATRGALLDLFP 173 (1147)
T ss_pred EEEeCCCCcCHHHHHHHHHHcCCeeCCcCCCceEEEEeCCEEEEcc
Confidence 34456999999999999999999999887766643 5777765
No 243
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=35.25 E-value=50 Score=20.58 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=16.9
Q ss_pred eecCHHHHHHHHHHcCCceeEEEec
Q 040309 65 KERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 65 ~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
..-+.+.+.+||++.|++...+...
T Consensus 60 ~~~~v~~V~~wL~~~G~~~~~~~~~ 84 (143)
T PF09286_consen 60 SPEDVAAVKSWLKSHGLTVVEVSAN 84 (143)
T ss_dssp -HHHHHHHHHHHHHCT-EEEEEETT
T ss_pred CHHHHHHHHHHHHHcCCceeEEeCC
Confidence 3445667788889999999885444
No 244
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=34.64 E-value=21 Score=23.18 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=7.3
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
+.+.+.++++.+.+.|.+ |+|+++|.=
T Consensus 8 d~~~r~~Vf~eVi~~~GP--pDaTVvVsv 34 (146)
T PF08952_consen 8 DEEKRESVFEEVISSQGP--PDATVVVSV 34 (146)
T ss_dssp ------------S-------TT-EEEEEE
T ss_pred CHHHHHHHHHHHHHhcCC--CCceEEEEe
Confidence 456688999999999995 899998864
No 245
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.46 E-value=1.9e+02 Score=22.99 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCc--eecCHHHHHHHHHHcCCceeE
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRG--KERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g--~~rt~~e~~~ll~~aGf~~~~ 85 (100)
-+.+++|++.++ . ||.+|+...-|.. +.-.++|-.++...|. ..-+.++....|+.+||..-+
T Consensus 207 ~~vv~~Lk~lA~------~-grtVi~tIHQPss-------~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~ 271 (613)
T KOG0061|consen 207 LQVVQLLKRLAR------S-GRTVICTIHQPSS-------ELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPE 271 (613)
T ss_pred HHHHHHHHHHHh------C-CCEEEEEEeCCcH-------HHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCC
Confidence 345677777654 3 8888887666532 2344666554443332 245778999999999998543
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=34.05 E-value=45 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
++-.+||.++.+.|+ ||++|++-
T Consensus 207 e~K~~Il~~l~~~m~---~ga~l~~R 229 (276)
T PF03059_consen 207 EPKEEILEHLAKHMA---PGARLVVR 229 (276)
T ss_dssp -SHHHHHHHHHHHS----TTSEEEEE
T ss_pred chHHHHHHHHHhhCC---CCcEEEEe
Confidence 456899999999999 89887765
No 247
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=34.04 E-value=88 Score=22.49 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=21.2
Q ss_pred HHHHHHHcC----CceeEEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAG----FSHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aG----f~~~~v~~~~~~~~vie~~p 100 (100)
...+++++| .+..+|.+++...++||++|
T Consensus 56 ~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ 88 (293)
T cd05168 56 FDRIFKEEGLPLWLRPYEILVTSSNSGLIETIP 88 (293)
T ss_pred HHHHHHHCCCCceeeeEEEEEccCCceeEEEeC
Confidence 455666666 34567788888899999986
No 248
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=34.04 E-value=83 Score=23.37 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCC----ceeEEEecCCcceEEEEeC
Q 040309 70 DDWKKLFLAAGF----SHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 70 ~e~~~ll~~aGf----~~~~v~~~~~~~~vie~~p 100 (100)
.-...++++.|+ ...++.+++...++||++|
T Consensus 113 ~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ 147 (354)
T cd00895 113 RIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIP 147 (354)
T ss_pred HHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeC
Confidence 345677788883 4467778888899999987
No 249
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=33.96 E-value=86 Score=23.15 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=22.3
Q ss_pred HHHHHHHcC----CceeEEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAG----FSHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aG----f~~~~v~~~~~~~~vie~~p 100 (100)
+..++++.| +...+|.+++...++||++|
T Consensus 114 ~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ 146 (352)
T cd00891 114 MDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVP 146 (352)
T ss_pred HHHHHHHCCCCeeeEEEEEEEccCCceEEEEeC
Confidence 456677777 34667888888899999986
No 250
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=33.82 E-value=43 Score=24.92 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.0
Q ss_pred ceecCHHHHHHHHHHcCCceeEEEe
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
+..++.+|+.++++++||..+..-+
T Consensus 334 ~~~~~~eel~~~i~~aG~~p~~Rdt 358 (370)
T COG1060 334 GDWRSVEELAALIKEAGRIPVERDT 358 (370)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeecc
Confidence 4478999999999999999876543
No 251
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=33.61 E-value=47 Score=25.24 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.5
Q ss_pred cccccCceecCHHHHHHHHHHcCCce
Q 040309 58 MVSLFRGKERSVDDWKKLFLAAGFSH 83 (100)
Q Consensus 58 ml~~~~g~~rt~~e~~~ll~~aGf~~ 83 (100)
..+.+|||.-|-+=.+++|.+|||++
T Consensus 48 hVaGTNGKGSt~afl~siL~~aG~~V 73 (427)
T COG0285 48 HVAGTNGKGSTCAFLESILREAGYKV 73 (427)
T ss_pred EEeCCCCchhHHHHHHHHHHHcCCCc
Confidence 34567899999999999999999993
No 252
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=33.22 E-value=37 Score=20.63 Aligned_cols=27 Identities=33% Similarity=0.246 Sum_probs=21.2
Q ss_pred ccccCceecCHHHHHHHHHHcCCceeE
Q 040309 59 VSLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 59 l~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
+...+|.+-|.+++.++|..+|-++..
T Consensus 9 ll~~~g~~~ta~~I~~IL~aaGveVe~ 35 (105)
T cd04411 9 LLHKGGKELTEDKIKELLSAAGAEIEP 35 (105)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCcCH
Confidence 344567789999999999999966544
No 253
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=33.11 E-value=37 Score=20.23 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
...++.+.+.++ ++|+++++-...
T Consensus 69 ~~~~~~~~~~l~---~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLR---PGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEE---EEEEEEEESSTS
T ss_pred HHHHHHHHHHhc---cCCEEEEEEccC
Confidence 356777888888 899999988665
No 254
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=32.88 E-value=38 Score=20.74 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=21.5
Q ss_pred ccccCceecCHHHHHHHHHHcCCceeE
Q 040309 59 VSLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 59 l~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
+...+|++-|.+...++|+.+|-++..
T Consensus 9 LL~~~g~~it~e~I~~IL~AAGveVee 35 (106)
T PRK06402 9 LLHSAGKEINEDNLKKVLEAAGVEVDE 35 (106)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCccH
Confidence 344567899999999999999966544
No 255
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=32.83 E-value=37 Score=22.74 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~ 34 (100)
.++.+.+.+.|+ |||++++.
T Consensus 156 ~~~~~~l~~~Lk---pgG~lvi~ 175 (212)
T PRK13942 156 PDIPKPLIEQLK---DGGIMVIP 175 (212)
T ss_pred ccchHHHHHhhC---CCcEEEEE
Confidence 345567778899 99998885
No 256
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=32.62 E-value=49 Score=17.87 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=12.8
Q ss_pred cCHHHHHHHHHHcCCcee
Q 040309 67 RSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~~~ 84 (100)
.+.+++.++.+++||...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft 42 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFT 42 (64)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 467777777778877653
No 257
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=32.46 E-value=49 Score=14.04 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=7.7
Q ss_pred HHHHHHHH-hCC
Q 040309 13 KLLKKCKE-AIP 23 (100)
Q Consensus 13 ~iL~~~~~-al~ 23 (100)
+||++|.. ||+
T Consensus 4 eiL~~CI~sAmP 15 (20)
T PF05924_consen 4 EILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHCTS-
T ss_pred HHHHHHHHHhcc
Confidence 78998874 555
No 258
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=32.14 E-value=39 Score=20.56 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=20.6
Q ss_pred cccccCceecCHHHHHHHHHHcCCce
Q 040309 58 MVSLFRGKERSVDDWKKLFLAAGFSH 83 (100)
Q Consensus 58 ml~~~~g~~rt~~e~~~ll~~aGf~~ 83 (100)
++...+|.+-|.+....+|+.+|-++
T Consensus 8 Lll~~~g~~iT~e~I~~IL~AAGv~v 33 (105)
T TIGR03685 8 LLLHSAGKEINEENLKAVLEAAGVEV 33 (105)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCcc
Confidence 34445678999999999999999544
No 259
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=31.97 E-value=95 Score=22.97 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=21.7
Q ss_pred HHHHHHHcCCc----eeEEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAGFS----HYKITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aGf~----~~~v~~~~~~~~vie~~p 100 (100)
+..++++.|+. ..+|.+++...++||++|
T Consensus 114 m~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ 146 (353)
T cd05166 114 MDKIWLQEGLDLRMITFRCLSTGYDRGMVELVP 146 (353)
T ss_pred HHHHHHhCCCCceeEEEEEEEcCCCcceEEEeC
Confidence 45666777743 467788888899999986
No 260
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=31.93 E-value=39 Score=20.69 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=21.1
Q ss_pred cccccCceecCHHHHHHHHHHcCCcee
Q 040309 58 MVSLFRGKERSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 58 ml~~~~g~~rt~~e~~~ll~~aGf~~~ 84 (100)
++...+|++-|.+....+|+.+|-++.
T Consensus 8 LLL~~~G~eITae~I~~IL~AAGveVd 34 (106)
T cd05832 8 LLLHYAGKEINEENLKKVLEAAGIEVD 34 (106)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCccc
Confidence 344457889999999999999995543
No 261
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=31.91 E-value=59 Score=26.06 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=32.9
Q ss_pred cccCceecCHHHHHHHHHHcCCceeEEEecCCcc----eEEEEeC
Q 040309 60 SLFRGKERSVDDWKKLFLAAGFSHYKITPILGVR----SLIEAYP 100 (100)
Q Consensus 60 ~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~~~~----~vie~~p 100 (100)
...-|.+.+.+++...|.+.||+.+..+...|-+ ++|+++|
T Consensus 157 ~l~~G~~i~~~~l~~~Lv~~gY~r~~~v~~~G~F~vRG~iiDIfp 201 (655)
T TIGR00631 157 HLEVGKEIDRRELLRRLVELQYERNDVDFQRGTFRVRGDVVEIFP 201 (655)
T ss_pred EEeCCCCcCHHHHHHHHHHcCCcccCccCCCceEEEECCEEEEec
Confidence 3445899999999999999999999887665543 5777776
No 262
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=31.90 E-value=64 Score=18.00 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCceeEEEec
Q 040309 69 VDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 69 ~~e~~~ll~~aGf~~~~v~~~ 89 (100)
...+++-|.++||+.++++-.
T Consensus 5 V~khR~~lRa~GLRPVqiWVP 25 (65)
T PF11455_consen 5 VRKHRERLRAAGLRPVQIWVP 25 (65)
T ss_pred HHHHHHHHHHcCCCcceeeCC
Confidence 457889999999999999743
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=31.81 E-value=39 Score=21.66 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
+..++-|+++.+.|+ |||.|.|+=+.--
T Consensus 69 ~TTl~Al~~al~lL~---~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 69 ETTLKALEAALELLK---PGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHHHHHHHHEE---EEEEEEEEE--ST
T ss_pred HHHHHHHHHHHHhhc---cCCEEEEEEeCCC
Confidence 456788999999999 9999999866543
No 264
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=31.76 E-value=2.2e+02 Score=21.26 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
...+.|..+.+.|+ |||.-+-+-..+---... -+. ..-.+-|-|.++...+.+.-||++.+-..+
T Consensus 274 NileYi~tI~~iLk---~GGvWiNlGPLlYHF~d~---------~g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 274 NILEYIDTIYKILK---PGGVWINLGPLLYHFEDT---------HGV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred HHHHHHHHHHHhcc---CCcEEEeccceeeeccCC---------CCC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 46788899999999 888766555443211110 011 112367889999999999999999876533
No 265
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=31.63 E-value=1.7e+02 Score=21.16 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=42.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhh-------hhhhhc-ccccCceecCHHHHHHH
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL-------CFDILM-VSLFRGKERSVDDWKKL 75 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~-------~~dl~m-l~~~~g~~rt~~e~~~l 75 (100)
.-|+|+ .+.-++++.+++. ..|..+++...-......+....... ..+-.. .....-++-|.+|+..+
T Consensus 72 ~i~~d~-~i~~~k~l~~~vh---~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~i 147 (341)
T PF00724_consen 72 GIWDDE-QIPGLKKLADAVH---AHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEI 147 (341)
T ss_dssp BSSSHH-HHHHHHHHHHHHH---HTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHH
T ss_pred hhchhh-HHHHHHHHHHHHH---hcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHH
Confidence 346554 6788899999999 55666666543221111000000000 000000 00111367798888876
Q ss_pred H----------HHcCCceeEEEecCCc
Q 040309 76 F----------LAAGFSHYKITPILGV 92 (100)
Q Consensus 76 l----------~~aGf~~~~v~~~~~~ 92 (100)
. ++|||--++++-..|+
T Consensus 148 i~~f~~AA~~A~~AGfDGVEIH~ahGy 174 (341)
T PF00724_consen 148 IEDFAQAARRAKEAGFDGVEIHAAHGY 174 (341)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTTS
T ss_pred HHHHHHHHHHHHHhccCeEeecccchh
Confidence 5 5789999999876543
No 266
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=31.62 E-value=90 Score=21.34 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
..-..++..+.+.|+ |||. +|+|.++-
T Consensus 155 ~~y~~~~~~~~~ll~---~GG~-ii~dn~l~ 181 (234)
T PLN02781 155 PNYVHFHEQLLKLVK---VGGI-IAFDNTLW 181 (234)
T ss_pred HHHHHHHHHHHHhcC---CCeE-EEEEcCCc
Confidence 455678889999999 8885 55565553
No 267
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=31.61 E-value=59 Score=21.10 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCceeEEE
Q 040309 70 DDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 70 ~e~~~ll~~aGf~~~~v~ 87 (100)
.+|.+-++..||++..+.
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~ 57 (149)
T COG3019 40 DEWAQHMKANGFEVKVVE 57 (149)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 589999999999998774
No 268
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=31.47 E-value=72 Score=22.64 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeee-cCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEE
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMA-IENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v-~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
|...-.|-+..+.|+ +.|.|.|++-- ..+.-.. .+....--.....+.+...+|++.|.+-|..+++++
T Consensus 97 E~~~p~lWRfw~~lP---~~G~i~IF~RSWY~~vl~~-------rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKff 166 (264)
T TIGR03709 97 ELDHDFLWRIHKALP---ERGEIGIFNRSHYEDVLVV-------RVHGLIPKAIWERRYEDINDFERYLTENGTTILKFF 166 (264)
T ss_pred HHcCchHHHHHHhCC---CCCeEEEEcCccccchhhh-------hhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 445567888889999 78999888842 2111000 000000000112344567789999999999998875
No 269
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=31.42 E-value=51 Score=24.17 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
.+||.++.+.++ |||+|+-.=+.+..
T Consensus 268 ~~iL~~a~~~lk---~GG~LVYSTCS~~~ 293 (355)
T COG0144 268 KEILAAALKLLK---PGGVLVYSTCSLTP 293 (355)
T ss_pred HHHHHHHHHhcC---CCCEEEEEccCCch
Confidence 578899999999 89988877766543
No 270
>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.
Probab=31.39 E-value=63 Score=21.07 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.0
Q ss_pred cCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 62 FRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 62 ~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
..|+.| |.+.+|+..|+++.+..++.
T Consensus 115 ~eGr~~---qIRrm~~~~G~~V~~L~Ri~ 140 (164)
T cd02554 115 TQGLNR---QIRRMCEALGYRVTDLKRVR 140 (164)
T ss_pred ECCcCH---HHHHHHHHcCCEEEEEEEEE
Confidence 456644 89999999999999987763
No 271
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=31.24 E-value=1e+02 Score=22.93 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHcCC----ceeEEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAGF----SHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aGf----~~~~v~~~~~~~~vie~~p 100 (100)
...+++++|+ ..++|.+++...++||++|
T Consensus 118 m~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ 150 (362)
T cd05173 118 MDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVS 150 (362)
T ss_pred HHHHHHHCCCCeeeEEEEEEEccCCceEEEEeC
Confidence 4566677774 3567778888899999986
No 272
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.19 E-value=56 Score=16.77 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCce
Q 040309 69 VDDWKKLFLAAGFSH 83 (100)
Q Consensus 69 ~~e~~~ll~~aGf~~ 83 (100)
.++..+.|+++||++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 789999999999975
No 273
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=31.15 E-value=86 Score=21.67 Aligned_cols=20 Identities=10% Similarity=0.338 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~ 34 (100)
.++++++.+.|+ |||++++.
T Consensus 196 ~~i~~~a~~~L~---~gG~l~l~ 215 (251)
T TIGR03704 196 RRVAAGAPDWLA---PGGHLLVE 215 (251)
T ss_pred HHHHHHHHHhcC---CCCEEEEE
Confidence 578888889999 89987744
No 274
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=31.07 E-value=88 Score=22.39 Aligned_cols=69 Identities=12% Similarity=0.283 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEee-ecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEE
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDM-AIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~-v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
|...-.|.+..+.++ .+|.++|+|- ..+..+-. ..+++.-=....-.-|...+|+++|.+.|-.+++.+
T Consensus 115 E~~qwY~qRy~~~lP---a~GeiviFdRSwYnr~gVe-------RVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfw 184 (270)
T COG2326 115 ERGQWYFQRYVAHLP---AAGEIVIFDRSWYNRAGVE-------RVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFW 184 (270)
T ss_pred hhccHHHHHHHHhCC---CCCeEEEechhhccccCee-------eccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEE
Confidence 445667888888888 7888888873 22222211 112221000001123566788999999998888764
No 275
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=31.04 E-value=74 Score=20.42 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 040309 8 DEESVKLLKKCKEAIPSKDEGGKVIIIDMA 37 (100)
Q Consensus 8 d~~~~~iL~~~~~al~~~~pgg~lli~e~v 37 (100)
-+++.+++++|.+|.. .+-++||--.+
T Consensus 60 G~eA~~Lv~r~~~av~---~~~KVli~Frl 86 (137)
T PF12101_consen 60 GEEAKELVRRCQKAVD---EDKKVLIGFRL 86 (137)
T ss_pred cHHHHHHHHHHHhhcc---cCCcEEEEEEe
Confidence 4689999999999999 77788765544
No 276
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=31.03 E-value=23 Score=25.12 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=20.2
Q ss_pred HHHHHHHHHhC----CCCCCCcEEEEEeeecC
Q 040309 12 VKLLKKCKEAI----PSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 12 ~~iL~~~~~al----~~~~pgg~lli~e~v~~ 39 (100)
.+||+++.+.+ + |||+|+-.=+-+.
T Consensus 195 ~~iL~~a~~~~~~~~k---~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 195 REILDNAAKLLNIDFK---PGGRLVYSTCSLS 223 (283)
T ss_dssp HHHHHHHHHCEHHHBE---EEEEEEEEESHHH
T ss_pred HHHHHHHHHhhccccc---CCCeEEEEeccHH
Confidence 67999999999 9 8998887766543
No 277
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.00 E-value=42 Score=21.66 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.0
Q ss_pred CceecCHHHHHHHHHHcCCcee
Q 040309 63 RGKERSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~ 84 (100)
.++--|-++-+.+|+++||+.+
T Consensus 130 ~~k~iSm~~sek~Lk~~Gfke~ 151 (152)
T COG4808 130 ASKGISMKQSEKLLKAAGFKEV 151 (152)
T ss_pred ccccccHHHHHHHHHhcCcccC
Confidence 3577899999999999999865
No 278
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=30.98 E-value=1.2e+02 Score=19.65 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHcCCceeEEE
Q 040309 67 RSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~~~~v~ 87 (100)
.|..+..++++++|-+.+.+.
T Consensus 128 ~Tl~~~~~~l~~~Ga~~v~v~ 148 (175)
T PRK02304 128 GTLEAAIKLLERLGAEVVGAA 148 (175)
T ss_pred HHHHHHHHHHHHcCCEEEEEE
Confidence 367778888888887776654
No 279
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=30.63 E-value=56 Score=26.49 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=17.1
Q ss_pred HHHHHHhCCCCCCCcEEEEEee
Q 040309 15 LKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 15 L~~~~~al~~~~pgg~lli~e~ 36 (100)
..+++++|.+|.|||-+|+.|-
T Consensus 562 ~~raa~~LnSp~PGGfLi~sdE 583 (705)
T PF07095_consen 562 TRRAAQALNSPPPGGFLIISDE 583 (705)
T ss_pred HHHHHHHhcCCCCCceEEEecC
Confidence 4566778887779999999774
No 280
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=30.62 E-value=78 Score=22.19 Aligned_cols=23 Identities=4% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
...+|++++.+.|+ |||.+ ++|.
T Consensus 222 ~~~~ii~~a~~~L~---~gG~l-~~e~ 244 (284)
T TIGR00536 222 ILRQIIELAPDYLK---PNGFL-VCEI 244 (284)
T ss_pred HHHHHHHHHHHhcc---CCCEE-EEEE
Confidence 46788999999999 88865 4554
No 281
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=30.49 E-value=1e+02 Score=20.01 Aligned_cols=57 Identities=14% Similarity=0.303 Sum_probs=28.8
Q ss_pred CCcEEEEEeeecCCCCCCchhhh----hh-hhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 27 EGGKVIIIDMAIENQSQDKESME----TQ-LCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~----~~-~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
+|-+++|+|-++...++-....+ .+ ...+...++ .|. +.+.+.+++.|++...+.+.
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~v-----dr~-~g~~~~l~~~gv~~~sl~~~ 164 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVV-----DRE-QGAEELLAELGITLTPLVRV 164 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEE-----ECC-ccHHHHHHhcCCcEEEEeEH
Confidence 57888888888765543210000 00 011111111 233 35677777788777666543
No 282
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=30.45 E-value=1.2e+02 Score=22.49 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=21.4
Q ss_pred HHHHHHcCC----ceeEEEecCCcceEEEEeC
Q 040309 73 KKLFLAAGF----SHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 73 ~~ll~~aGf----~~~~v~~~~~~~~vie~~p 100 (100)
..+++++|+ ...++.+++...++||++|
T Consensus 116 d~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ 147 (354)
T cd05177 116 DNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVP 147 (354)
T ss_pred HHHHHHcCCCceEEEEEEEecCCCceEEEEeC
Confidence 566778884 3557778888899999986
No 283
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=30.30 E-value=80 Score=21.92 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=22.6
Q ss_pred ceecCHHHH-HHHHHHcCCceeEEEecCC
Q 040309 64 GKERSVDDW-KKLFLAAGFSHYKITPILG 91 (100)
Q Consensus 64 g~~rt~~e~-~~ll~~aGf~~~~v~~~~~ 91 (100)
...-|-+|. +.+|++.|+..++|.+++|
T Consensus 34 ~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G 62 (222)
T PF04298_consen 34 SSGMTGAEVARHILDRNGLSDVRVERVPG 62 (222)
T ss_pred CCCCCHHHHHHHHHHHCCCCCeeEEEeCC
Confidence 344577787 7899999999999998765
No 284
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=30.19 E-value=55 Score=18.59 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=18.9
Q ss_pred ceecCHHHHHHHHHHcCCceeEEE
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
|..--.+++..+|+..||++.++-
T Consensus 13 ~~~GlA~~~a~~L~~~Gf~v~~~~ 36 (90)
T PF13399_consen 13 GVSGLAARVADALRNRGFTVVEVG 36 (90)
T ss_pred CCcCHHHHHHHHHHHCCCceeecC
Confidence 555567788999999999997763
No 285
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=30.19 E-value=48 Score=16.48 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHcCCc
Q 040309 68 SVDDWKKLFLAAGFS 82 (100)
Q Consensus 68 t~~e~~~ll~~aGf~ 82 (100)
-..+|..+|+.+|.+
T Consensus 27 ~p~~w~~l~~~~~is 41 (42)
T cd00132 27 LPPDLQSLFQTAGIS 41 (42)
T ss_pred CCHHHHHHHHHccCC
Confidence 356999999998854
No 286
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=30.16 E-value=1.2e+02 Score=17.65 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 6 WNDEESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 6 w~d~~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
-+++++.+++.-++-.++ ...|-+.
T Consensus 20 ~~~~~~l~~ia~~Rl~~P----~~~I~~~ 44 (94)
T smart00876 20 VSPEEFLRTIAAARLALP----DAGIRLS 44 (94)
T ss_pred CCHHHHHHHHHHHHHHCC----CcceEEe
Confidence 477888888888877777 5666655
No 287
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=30.09 E-value=1.7e+02 Score=20.04 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 14 LLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 14 iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
.++.+.+.++ ++|+++++-...
T Consensus 200 ~~~~~~~~l~---~~G~iv~~G~~~ 221 (280)
T TIGR03366 200 AVRACLESLD---VGGTAVLAGSVF 221 (280)
T ss_pred HHHHHHHHhc---CCCEEEEeccCC
Confidence 4666778888 899999887553
No 288
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=29.82 E-value=54 Score=21.78 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCCCCCCcEEEEE
Q 040309 13 KLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 13 ~iL~~~~~al~~~~pgg~lli~ 34 (100)
.+.+++.+.|+ |||+|++.
T Consensus 154 ~~~~~l~~~L~---~gG~lvi~ 172 (205)
T PRK13944 154 TIPSALVRQLK---DGGVLVIP 172 (205)
T ss_pred hhhHHHHHhcC---cCcEEEEE
Confidence 44567788899 89999774
No 289
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=29.80 E-value=69 Score=22.19 Aligned_cols=70 Identities=11% Similarity=0.304 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEEeee-cCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEE
Q 040309 8 DEESVKLLKKCKEAIPSKDEGGKVIIIDMA-IENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 8 d~~~~~iL~~~~~al~~~~pgg~lli~e~v-~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v 86 (100)
+|...-.|-+..+.|| +.|.|.|++-- ..+. . ........--.....+.....+|++.|.+.|..++++
T Consensus 71 eE~~~p~lwRfw~~lP---~~G~i~IF~rSwY~~~-l------v~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKf 140 (230)
T TIGR03707 71 RERTQWYFQRYVQHLP---AAGEIVLFDRSWYNRA-G------VERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKY 140 (230)
T ss_pred HHHcChHHHHHHHhCC---CCCeEEEEeCchhhhH-H------HHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4456678888889999 78888888742 1110 0 0000000000001233446678899999999999887
Q ss_pred E
Q 040309 87 T 87 (100)
Q Consensus 87 ~ 87 (100)
+
T Consensus 141 f 141 (230)
T TIGR03707 141 W 141 (230)
T ss_pred E
Confidence 4
No 290
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=29.74 E-value=1.4e+02 Score=19.78 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCcEEEEEeeecCCCCCCchhhhhhhhh--hhhcccccCceecCH-HHHHHHHHHcCCceeEEEecC
Q 040309 27 EGGKVIIIDMAIENQSQDKESMETQLCF--DILMVSLFRGKERSV-DDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~~~~~~--dl~ml~~~~g~~rt~-~e~~~ll~~aGf~~~~v~~~~ 90 (100)
+|.+++|+|-++...++-.. ....+. ........---.|+. ..++.+.++.|+.+..+.+..
T Consensus 113 ~G~rVlIVDDvitTG~T~~~--ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv~v~sl~~~~ 177 (187)
T PRK12560 113 KGDRVAIIDDTLSTGGTVIA--LIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQTGINVKSLVKID 177 (187)
T ss_pred CcCEEEEEEeccccCHHHHH--HHHHHHHCCCEEEEEEEEEEecccchHHHHhhccCCcEEEEEEEE
Confidence 78999999998876554210 000111 111000001123332 346777788898887776653
No 291
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=29.62 E-value=2.2e+02 Score=20.69 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc-----hhhh-hhhhhhhhc--------c--cccCceecCHHHHHH
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK-----ESME-TQLCFDILM--------V--SLFRGKERSVDDWKK 74 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~-----~~~~-~~~~~dl~m--------l--~~~~g~~rt~~e~~~ 74 (100)
-..+|+.=++=|. |||++++.=...++..... .+.. ...+.||.- + .+..-..+|.+|+++
T Consensus 162 ~~~FL~~Ra~ELv---~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~ 238 (334)
T PF03492_consen 162 FSSFLKARAEELV---PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRA 238 (334)
T ss_dssp HHHHHHHHHHHEE---EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHH
T ss_pred HHHHHHHhhheec---cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHH
Confidence 3455555556788 8999999988776622111 0000 111222211 1 122356789999999
Q ss_pred HHHHcC-CceeEEE
Q 040309 75 LFLAAG-FSHYKIT 87 (100)
Q Consensus 75 ll~~aG-f~~~~v~ 87 (100)
.+++.| |++.++.
T Consensus 239 ~I~~~gsF~I~~le 252 (334)
T PF03492_consen 239 IIEEEGSFEIEKLE 252 (334)
T ss_dssp HHHHHTSEEEEEEE
T ss_pred HHhcCCCEEEEEEE
Confidence 999886 7776553
No 292
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=29.62 E-value=53 Score=21.74 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
+..+.+.+.+.|+ |||++++.-
T Consensus 154 ~~~~~~~l~~~L~---~gG~lv~~~ 175 (212)
T PRK00312 154 APEIPRALLEQLK---EGGILVAPV 175 (212)
T ss_pred chhhhHHHHHhcC---CCcEEEEEE
Confidence 3456777889999 899988753
No 293
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=29.52 E-value=1.1e+02 Score=18.89 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
.-.++|++++++++ --|++..+|+--
T Consensus 35 ~~Lk~~~~~A~~vk---G~gT~~~vdCgd 60 (112)
T cd03067 35 ALLKLLSDVAQAVK---GQGTIAWIDCGD 60 (112)
T ss_pred HHHHHHHHHHHHhc---CceeEEEEecCC
Confidence 34678999999999 579999999863
No 294
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=29.52 E-value=48 Score=21.23 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=31.5
Q ss_pred hCCCCCCCcEEEEEeeecCCCCCC-----------------------chhhhhhhhhhhhcc-cccCceecCHHHHHHHH
Q 040309 21 AIPSKDEGGKVIIIDMAIENQSQD-----------------------KESMETQLCFDILMV-SLFRGKERSVDDWKKLF 76 (100)
Q Consensus 21 al~~~~pgg~lli~e~v~~~~~~~-----------------------~~~~~~~~~~dl~ml-~~~~g~~rt~~e~~~ll 76 (100)
+|+ ||-|++|.-.++.-++.. .|. .+..|-.+|| +...|.+-+.++|+.-+
T Consensus 8 SLk---~gEki~iNGAVlr~DRkv~lellNdvtfLlEnhVlQpdqaTTPl--RqlYF~aqmmlinp~gaeq~~~~F~~~l 82 (148)
T COG5443 8 SLK---PGEKIFINGAVLRVDRKVALELLNDVTFLLENHVLQPDQATTPL--RQLYFIAQMMLINPAGAEQATEMFRKSL 82 (148)
T ss_pred eec---CCCEEEEeccEEEEeceeEEEeeccchHHHHhccCCccccCChH--HHHHHHHHHHhcCHhhHHHHHHHHHHHH
Confidence 567 788888877665433221 121 3344555555 44459998888888766
Q ss_pred H
Q 040309 77 L 77 (100)
Q Consensus 77 ~ 77 (100)
.
T Consensus 83 ~ 83 (148)
T COG5443 83 N 83 (148)
T ss_pred H
Confidence 5
No 295
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=29.51 E-value=43 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=16.0
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~ 34 (100)
..+.+.+.+.|+ |||++++.
T Consensus 157 ~~~~~~~~~~L~---~gG~lv~~ 176 (215)
T TIGR00080 157 PKIPEALIDQLK---EGGILVMP 176 (215)
T ss_pred ccccHHHHHhcC---cCcEEEEE
Confidence 456677888999 99998874
No 296
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=29.19 E-value=1.1e+02 Score=20.34 Aligned_cols=57 Identities=16% Similarity=0.319 Sum_probs=31.5
Q ss_pred CCcEEEEEeeecCCCCCCchhhh----hh-hhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 27 EGGKVIIIDMAIENQSQDKESME----TQ-LCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~----~~-~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
+|-+++|+|-++..+.+-....+ .+ ....+..++ .|. +.+++.+++.|+.+..+...
T Consensus 112 ~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv-----~~~-~~~~~~~~~~g~~~~sl~~~ 173 (202)
T PRK00455 112 FGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIV-----DRQ-SAAQEVFADAGVPLISLITL 173 (202)
T ss_pred CCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEE-----ECc-chHHHHHHhcCCcEEEEeeH
Confidence 47799999988876554210000 00 011111111 122 56888899999888777654
No 297
>PRK13699 putative methylase; Provisional
Probab=29.13 E-value=1e+02 Score=21.08 Aligned_cols=21 Identities=0% Similarity=-0.107 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEE
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVII 33 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli 33 (100)
-..+.+++++++|+ |||.+++
T Consensus 50 w~~~~l~E~~RVLK---pgg~l~i 70 (227)
T PRK13699 50 WLQPACNEMYRVLK---KDALMVS 70 (227)
T ss_pred HHHHHHHHHHHHcC---CCCEEEE
Confidence 35688999999999 8887765
No 298
>PF02479 Herpes_IE68: Herpesvirus immediate early protein; InterPro: IPR003403 This regulatory protein is expressed from an immediate early gene in the cell cycle of Herpesviridae. The protein is known by various names including IE-68, US1, ICP22 and IR4.
Probab=28.89 E-value=57 Score=20.81 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=22.6
Q ss_pred hhhhhhhhcccccCceecCHHHHHHHHHHcC
Q 040309 50 TQLCFDILMVSLFRGKERSVDDWKKLFLAAG 80 (100)
Q Consensus 50 ~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aG 80 (100)
...++|+.||.-++ .--+.+.|+.||+-.|
T Consensus 61 RR~l~D~YlmGy~~-~Rl~~~~We~lLQlsp 90 (132)
T PF02479_consen 61 RRLLLDFYLMGYTR-QRLTPACWERLLQLSP 90 (132)
T ss_pred HHHHHHHHHHhhcc-CCCCHHHHHHHHhhCc
Confidence 34688998887654 3458899999998776
No 299
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=28.42 E-value=58 Score=16.39 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCceeE
Q 040309 70 DDWKKLFLAAGFSHYK 85 (100)
Q Consensus 70 ~e~~~ll~~aGf~~~~ 85 (100)
+|+...+..|||..++
T Consensus 1 ~e~a~Rl~~AgF~~i~ 16 (41)
T PF11590_consen 1 EETAERLRSAGFATIG 16 (41)
T ss_dssp -HHHHHHHHTT-EEEC
T ss_pred ChHHHHHHHHhHHHhc
Confidence 3677889999998754
No 300
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=28.40 E-value=95 Score=22.05 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=24.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
=|-+|. -+.|.++.++|+ |||.+.++-...+
T Consensus 169 LDmp~P--W~~le~~~~~Lk---pgg~~~~y~P~ve 199 (256)
T COG2519 169 LDLPDP--WNVLEHVSDALK---PGGVVVVYSPTVE 199 (256)
T ss_pred EcCCCh--HHHHHHHHHHhC---CCcEEEEEcCCHH
Confidence 355554 678999999999 8999988765554
No 301
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=28.35 E-value=1.4e+02 Score=22.27 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=21.6
Q ss_pred HHHHHHHcCCc----eeEEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAGFS----HYKITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aGf~----~~~v~~~~~~~~vie~~p 100 (100)
+..++++.|+. ..++.+++...++||++|
T Consensus 114 md~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ 146 (353)
T cd05176 114 MDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVP 146 (353)
T ss_pred HHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeC
Confidence 45566777754 466778888899999987
No 302
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.27 E-value=1.4e+02 Score=17.89 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=28.3
Q ss_pred CceecCHHHHHHHHHHcCCceeE----EEecCCcceEEEEeC
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYK----ITPILGVRSLIEAYP 100 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~----v~~~~~~~~vie~~p 100 (100)
.|..-+++-..+.|++.||++.. ++...+..+.||+.|
T Consensus 8 rGf~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik~ 49 (96)
T COG4004 8 RGFKPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIKP 49 (96)
T ss_pred cCCCCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEec
Confidence 47777888999999999987653 344456688888765
No 303
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=28.15 E-value=1.2e+02 Score=18.62 Aligned_cols=19 Identities=16% Similarity=0.199 Sum_probs=14.6
Q ss_pred cCHHHHHHHHHHcCCceeE
Q 040309 67 RSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~~~~ 85 (100)
...+++...|++.||....
T Consensus 66 ~~l~~~~~~L~~~Gf~~~~ 84 (144)
T PF08676_consen 66 ELLEENKEELEKLGFEIEE 84 (144)
T ss_dssp HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHhCCeEEEE
Confidence 3467889999999999875
No 304
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=28.02 E-value=1.2e+02 Score=17.13 Aligned_cols=26 Identities=4% Similarity=-0.211 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHcCCceeEEEecCCcc
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILGVR 93 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~~~ 93 (100)
+.++...|.++.|.++......++.+
T Consensus 48 ~~~di~~~~~~~G~~~~~~~~~~g~~ 73 (81)
T PRK00299 48 TTRDIPSFCRFMDHELLAQETEQLPY 73 (81)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCEE
Confidence 66788889999999998766544433
No 305
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.76 E-value=58 Score=17.19 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHcCCce
Q 040309 68 SVDDWKKLFLAAGFSH 83 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~ 83 (100)
..+...+.|+++||++
T Consensus 54 ~~~~~~~~L~~~G~~v 69 (69)
T cd04909 54 DRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 3568899999999964
No 306
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.72 E-value=67 Score=17.00 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHcCCce
Q 040309 68 SVDDWKKLFLAAGFSH 83 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~ 83 (100)
..+...+.|+++||++
T Consensus 49 ~~~~~~~~L~~~G~~v 64 (66)
T cd04908 49 DPDKAKEALKEAGFAV 64 (66)
T ss_pred CHHHHHHHHHHCCCEE
Confidence 3668889999999986
No 307
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.54 E-value=69 Score=16.58 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=32.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCc
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 82 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~ 82 (100)
+-..+.|.+-+++....++ |= .+..++-... .+.+......-+.++..+.++++||+
T Consensus 6 ~m~C~~C~~~v~~~l~~~~----GV----~~v~vd~~~~-------------~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 6 GMTCEGCAKKVEKALSKLP----GV----KSVKVDLETK-------------TVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp STTSHHHHHHHHHHHHTST----TE----EEEEEETTTT-------------EEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CcccHHHHHHHHHHHhcCC----CC----cEEEEECCCC-------------EEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 3456678888888888777 31 1222221111 01111222225778999999999985
No 308
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=27.54 E-value=1.6e+02 Score=24.53 Aligned_cols=25 Identities=8% Similarity=0.200 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
..+.++++++-++ ++|++++.=...
T Consensus 567 ~~~a~~~~rEll~---ddg~lv~y~ahk 591 (875)
T COG1743 567 FREAFQAVRELLK---DDGRLVTYYAHK 591 (875)
T ss_pred HHHHHHHHHHhcC---CCCeEEEEEecc
Confidence 3677888888888 889888876554
No 309
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=27.49 E-value=1.2e+02 Score=22.73 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=21.6
Q ss_pred HHHHHHHcC----CceeEEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAG----FSHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aG----f~~~~v~~~~~~~~vie~~p 100 (100)
...++++.| +...+|.+++...++||++|
T Consensus 123 md~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ 155 (365)
T cd00894 123 MESIWETESLDLCLLPYGCISTGDKIGMIEIVK 155 (365)
T ss_pred HHHHHHHcCCCeEEEEEEEEEecCCceEEEEcC
Confidence 455667777 34567788888899999986
No 310
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=27.17 E-value=86 Score=23.58 Aligned_cols=71 Identities=6% Similarity=-0.049 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEE
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
..+|+.+++.|+ |||.+.+.--..+-... ..........+..-...+...+-..+|++-..+.|-.+.++.
T Consensus 215 ~~fL~e~~RvLk---pGG~l~l~TD~~~y~~~--~~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~~~~G~~Iy~l~ 285 (390)
T PRK14121 215 EDFLNEALRVLK---PGGTLELRTDSELYFEF--SLELFLKLPKAKIEIKKNAQLEVSSKYEDRWKKQNKDIYDLR 285 (390)
T ss_pred HHHHHHHHHHcC---CCcEEEEEEECHHHHHH--HHHHHHhCCCceeecccCCCCCCCCHHHHHHHHCCCCEEEEE
Confidence 578999999999 89998875432210000 000000000000001111122344688888889998887764
No 311
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=26.89 E-value=1.5e+02 Score=17.75 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHcCCceeEEEecCC---cceEEEEe
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILG---VRSLIEAY 99 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~---~~~vie~~ 99 (100)
=..|..+.|++||.+..+|+..+. .+.++|+.
T Consensus 24 vWPEv~~~l~~~Gi~~ysIf~~g~~~~LF~~~E~~ 58 (106)
T PF05336_consen 24 VWPEVLAALREAGIRNYSIFRDGDTGRLFMYMETD 58 (106)
T ss_dssp --HHHHHHHHHCTEEEEEEEEETTTTEEEEEEEEC
T ss_pred cCHHHHHHHHHCCCeEEEEEEeCCCCEEEEEEEec
Confidence 456888899999999999988754 46777753
No 312
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=26.84 E-value=89 Score=20.54 Aligned_cols=22 Identities=14% Similarity=-0.006 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHcCCceeEEEec
Q 040309 68 SVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~ 89 (100)
+.++..+||.+-|+...++-+-
T Consensus 6 ~d~~I~~WL~EeG~~~~kv~~~ 27 (161)
T COG5440 6 SDNMILDWLAEEGNVSVKVPDE 27 (161)
T ss_pred HHHHHHHHHHHhCceeeccCCC
Confidence 4578899999999988887543
No 313
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=26.72 E-value=82 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.9
Q ss_pred CceecCHHHHHHHHHHc---CCceeEEEec
Q 040309 63 RGKERSVDDWKKLFLAA---GFSHYKITPI 89 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~a---Gf~~~~v~~~ 89 (100)
-|++-|.+||++.++++ +|-+.+.++.
T Consensus 356 ~G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 356 IGWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred ECCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 38899999999999987 6777766554
No 314
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=26.69 E-value=1.3e+02 Score=22.34 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHHHHHcCC----ceeEEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAGF----SHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aGf----~~~~v~~~~~~~~vie~~p 100 (100)
...++++.|+ +..+|.+++...++||++|
T Consensus 118 md~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ 150 (361)
T cd05174 118 MDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVK 150 (361)
T ss_pred HHHHHHHCCCCeeeEEEEEEEecCCceEEEEeC
Confidence 4456677774 3567788888899999986
No 315
>PHA03411 putative methyltransferase; Provisional
Probab=26.65 E-value=54 Score=23.53 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHcCCce
Q 040309 68 SVDDWKKLFLAAGFSH 83 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~ 83 (100)
+.+||+++|+++||..
T Consensus 194 ~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 194 KSNKYLKWSKQTGLVT 209 (279)
T ss_pred CHHHHHHHHHhcCcEe
Confidence 7899999999999975
No 316
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=26.56 E-value=1.9e+02 Score=22.38 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=30.3
Q ss_pred CCcEEEEEeeecCCCCCCchhhh----hh-hhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 27 EGGKVIIIDMAIENQSQDKESME----TQ-LCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~----~~-~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
+|.+++|+|-++...++.-...+ .+ ...++..++ .|.. ..++.|++.|+....+...
T Consensus 392 ~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlV-----DR~~-g~~~~L~~~gv~~~Sl~tl 453 (477)
T PRK05500 392 PGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFI-----DHEQ-GVKDKLQSHGYQAYSVLTI 453 (477)
T ss_pred CcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEE-----ECCc-chHHHHHhcCCCEEEEEEH
Confidence 78999999998876554210000 00 011121122 2222 4566677788877777654
No 317
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=26.53 E-value=1.3e+02 Score=22.36 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=21.8
Q ss_pred HHHHHHHcCC----ceeEEEecCCcceEEEEeC
Q 040309 72 WKKLFLAAGF----SHYKITPILGVRSLIEAYP 100 (100)
Q Consensus 72 ~~~ll~~aGf----~~~~v~~~~~~~~vie~~p 100 (100)
...++++.|+ +.++|.+++...++||++|
T Consensus 122 m~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ 154 (366)
T cd05165 122 MDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVR 154 (366)
T ss_pred HHHHHHhCCCCceeEEEEEEEecCCceEEEEeC
Confidence 4566677774 3567788888899999986
No 318
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=26.34 E-value=1.4e+02 Score=20.64 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCceeEEEecCCcceEEEEe
Q 040309 69 VDDWKKLFLAAGFSHYKITPILGVRSLIEAY 99 (100)
Q Consensus 69 ~~e~~~ll~~aGf~~~~v~~~~~~~~vie~~ 99 (100)
.++-++.|...||+.++|..- +....||+-
T Consensus 187 v~~~E~~l~~~g~~~~rvr~~-~~~a~ie~~ 216 (252)
T TIGR00268 187 VDEAEEVLRNAGVGQVRVRNY-DNLAVIEVP 216 (252)
T ss_pred HHHHHHHHHHcCCCeEEEEec-CCeEEEEEC
Confidence 455667777889999998765 568888874
No 319
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=26.15 E-value=80 Score=15.13 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=14.5
Q ss_pred cCHHHHHHHHHHcCCcee
Q 040309 67 RSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~~~ 84 (100)
.|.++.++||++.|....
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 477899999999996543
No 320
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=25.76 E-value=76 Score=22.88 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=22.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
|.|+++.+.++++.+.+..+. .++.++|.
T Consensus 160 ~~~~~~~~~~l~~~l~~~~~~--~~~~~~vt 188 (311)
T PF06258_consen 160 YRWDEEDAERLLDQLAALAAA--YGGSLLVT 188 (311)
T ss_pred cccCHHHHHHHHHHHHHHHHh--CCCeEEEE
Confidence 789999999999999888873 34466654
No 321
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=25.67 E-value=1e+02 Score=18.65 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
-.++.++...+|+ |-|++..|.
T Consensus 62 rqkL~krf~~~lk----~kRviCLDI 83 (109)
T COG4551 62 RQKLQKRFKASLK----GKRVICLDI 83 (109)
T ss_pred HHHHHHHhhHHhc----CCeEEEEeC
Confidence 4688899999999 788888873
No 322
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=25.50 E-value=1.3e+02 Score=21.04 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHcCCceeEEEecC
Q 040309 68 SVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
+..++.++++++||.++.....+
T Consensus 171 ~~~~~~~~~~~~G~~v~~t~~~~ 193 (260)
T COG0566 171 LARTLLELLKEAGFWVVATSLDG 193 (260)
T ss_pred cHHHHHHHHHHcCeEEEEECCCC
Confidence 57799999999999998875443
No 323
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=25.47 E-value=1e+02 Score=19.60 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=14.0
Q ss_pred hCCCCCCCcEEEEEeeecCCC
Q 040309 21 AIPSKDEGGKVIIIDMAIENQ 41 (100)
Q Consensus 21 al~~~~pgg~lli~e~v~~~~ 41 (100)
.|+ ||-|++|...++...
T Consensus 6 ~LK---P~ERi~INGaVi~Ng 23 (131)
T PRK12791 6 ELK---PFERIVIGQSVITNS 23 (131)
T ss_pred EeC---CCCEEEEcCEEEEeC
Confidence 467 899999999887743
No 324
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=25.35 E-value=53 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=23.8
Q ss_pred cccCceecCHHHHHHHHHHcCCceeEEEe
Q 040309 60 SLFRGKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 60 ~~~~g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
+.+-|-..-..-+.++|++.||+++.|..
T Consensus 61 AfCiGL~~EA~~~~~iL~~~gFev~sV~C 89 (157)
T PF08901_consen 61 AFCIGLRKEARILAKILEANGFEVYSVCC 89 (157)
T ss_pred hhhHhHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 34557777888899999999999999864
No 325
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=25.25 E-value=2e+02 Score=18.68 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
..+++++.+.|. ++|.|.|-=.-.+ .|+.=+..++.+++||...+..+.
T Consensus 105 ~~Ff~Sa~~~L~---~~G~IhVTl~~~~--------------------------py~~W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 105 RGFFKSASQLLK---PDGEIHVTLKDGQ--------------------------PYDSWNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred HHHHHHHHHhcC---CCCEEEEEeCCCC--------------------------CCccccHHHHHHhcCCEEEEEecC
Confidence 456677777888 7787776432211 122223457777889988887664
No 326
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=25.25 E-value=64 Score=14.36 Aligned_cols=18 Identities=6% Similarity=0.158 Sum_probs=13.7
Q ss_pred CceecCHHHHHHHHH-HcC
Q 040309 63 RGKERSVDDWKKLFL-AAG 80 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~-~aG 80 (100)
+...-+.+|++++++ +.|
T Consensus 13 ~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 13 GDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp SSSEEEHHHHHHHHHHHTT
T ss_pred CCCcCcHHHHHHHHHHhcC
Confidence 455678999999998 455
No 327
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=25.19 E-value=58 Score=15.06 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=10.4
Q ss_pred ccCChHHHHHHHHH
Q 040309 4 HNWNDEESVKLLKK 17 (100)
Q Consensus 4 Hdw~d~~~~~iL~~ 17 (100)
|++++++..+=|.+
T Consensus 14 h~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 14 HGLSEEEVAERLAA 27 (28)
T ss_pred cCCCHHHHHHHHHc
Confidence 78888887766654
No 328
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.15 E-value=69 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 6 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 6 w~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
|+..+...+|..+ |-||+||.|...+.
T Consensus 291 W~~~~ikafL~av--------P~GrllVLDLyaEv 317 (666)
T KOG2233|consen 291 WPPWQIKAFLSAV--------PRGRLLVLDLYAEV 317 (666)
T ss_pred CChHHHHHHHhcC--------CcCcEEEEehhhhh
Confidence 7888887777765 68999999976543
No 329
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=25.10 E-value=52 Score=18.32 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=14.9
Q ss_pred cccCceecCHH---HHHHHHHHcCCceeEE
Q 040309 60 SLFRGKERSVD---DWKKLFLAAGFSHYKI 86 (100)
Q Consensus 60 ~~~~g~~rt~~---e~~~ll~~aGf~~~~v 86 (100)
+..||+++... -+.+||++-||....+
T Consensus 5 i~~ng~~~e~~~~~tv~dLL~~l~~~~~~v 34 (68)
T COG2104 5 IQLNGKEVEIAEGTTVADLLAQLGLNPEGV 34 (68)
T ss_pred EEECCEEEEcCCCCcHHHHHHHhCCCCceE
Confidence 33455554333 3667777777765444
No 330
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=25.07 E-value=1.2e+02 Score=22.08 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
+.+.-+|.++...|+ |||.|+|+-....
T Consensus 89 ~~~~~~l~~~~~~l~---~g~~i~~~G~~~~ 116 (342)
T PRK09489 89 QEAQFQLMNLLSLLP---VGTDIFVVGENRS 116 (342)
T ss_pred HHHHHHHHHHHHhCC---CCCEEEEEEeccc
Confidence 457788999999999 9999999876543
No 331
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=24.93 E-value=78 Score=21.04 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEe
Q 040309 9 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 9 ~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~ 88 (100)
.--..+++-+++.|+ |||+|.| |++-|... ..-+ ..|..=...-.-..|..+||+..+-+.
T Consensus 63 ~~E~~l~~~~~~~l~---pg~~lfV-eY~~D~eT----------~~~L-----~~G~pp~~TrLG~~Ll~~GFtwfKdWY 123 (170)
T PF06557_consen 63 PLEDELYKLFSRYLE---PGGRLFV-EYVEDRET----------RRQL-----QRGVPPAETRLGFSLLKAGFTWFKDWY 123 (170)
T ss_dssp HHHHHHHHHHHTT-------SEEEE-E-TT-HHH----------HHHH-----HTT--GGGSHHHHHHHTTT--EEEEEE
T ss_pred hHHHHHHHHHHHHhh---hcCeEEE-EEecCHHH----------HHHH-----HcCCCcccchhHHHHHhCCcEEEeeee
Confidence 334678889999999 8988765 66644210 0011 112222223456778899999998765
Q ss_pred c
Q 040309 89 I 89 (100)
Q Consensus 89 ~ 89 (100)
.
T Consensus 124 f 124 (170)
T PF06557_consen 124 F 124 (170)
T ss_dssp -
T ss_pred c
Confidence 4
No 332
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.90 E-value=2.4e+02 Score=19.97 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=21.7
Q ss_pred cCceecCHHHHHHHHHHcCCceeEEEec
Q 040309 62 FRGKERSVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 62 ~~g~~rt~~e~~~ll~~aGf~~~~v~~~ 89 (100)
.+....+.++++.+++..+...+++.+.
T Consensus 233 ~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 233 ADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred EeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 3567789999999999888777766543
No 333
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=24.70 E-value=1.2e+02 Score=19.76 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 6 WNDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 6 w~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
++.++..+++..+..+++ .|++|+|+=
T Consensus 86 p~~~~l~~~v~~i~~~~~---~g~kVvVHC 112 (180)
T COG2453 86 PDLEDLDKIVDFIEEALS---KGKKVVVHC 112 (180)
T ss_pred CcHHHHHHHHHHHHHHHh---cCCeEEEEc
Confidence 345778889999999988 677776654
No 334
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=24.64 E-value=1.4e+02 Score=21.90 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=20.9
Q ss_pred eecCHHHHHHHHHHcCCceeEEEecCCc
Q 040309 65 KERSVDDWKKLFLAAGFSHYKITPILGV 92 (100)
Q Consensus 65 ~~rt~~e~~~ll~~aGf~~~~v~~~~~~ 92 (100)
|.-+.++|..+|+.|+-+++........
T Consensus 31 R~i~~~~w~~~L~~a~C~Ils~~sn~~~ 58 (331)
T PF01536_consen 31 RSIPREFWDEMLDLAGCEILSEISNEHM 58 (331)
T ss_dssp GGS-HHHHHHHHHHCT-EEEEEEE-SSE
T ss_pred ccCCHHHHHHHHHhcCCEEEEEEccCce
Confidence 5568999999999999999988776543
No 335
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=24.64 E-value=3.1e+02 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHcCCceeEEEe
Q 040309 68 SVDDWKKLFLAAGFSHYKITP 88 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~ 88 (100)
=.+|++.+|+.||+.+++|.-
T Consensus 274 iiqelE~~FrgAGW~VikviW 294 (887)
T COG2609 274 IIQELEGIFRGAGWNVIKVIW 294 (887)
T ss_pred hHHHHHHHhccCCceEEEEEe
Confidence 578999999999999999863
No 336
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=24.59 E-value=2.1e+02 Score=18.89 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=10.7
Q ss_pred CCcEEEEEeeecCCCC
Q 040309 27 EGGKVIIIDMAIENQS 42 (100)
Q Consensus 27 pgg~lli~e~v~~~~~ 42 (100)
+|.+++|+|-+++...
T Consensus 104 ~G~~VLIVDDIi~TG~ 119 (187)
T TIGR01367 104 PGEKFVAVEDVVTTGG 119 (187)
T ss_pred CCCEEEEEEeeecchH
Confidence 4677777777776543
No 337
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=24.24 E-value=1.4e+02 Score=22.24 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=18.5
Q ss_pred CceecCHHHHHHHHHHcCCceeEEE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
+=.+.|..+++.+++.....++++-
T Consensus 267 gE~~~~~~~~~~li~~~a~Divq~d 291 (394)
T PRK15440 267 GEHEATLQGFRTLLEMGCIDIIQPD 291 (394)
T ss_pred CCCccCHHHHHHHHHcCCCCEEeCC
Confidence 3346789999999998776666553
No 338
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=24.23 E-value=72 Score=24.01 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
.-+.+|+++.+... .||++||=-.-+.
T Consensus 217 rERdFLk~VhecVa---~GGkvlIPvFALG 243 (501)
T KOG1136|consen 217 RERDFLKKVHECVA---RGGKVLIPVFALG 243 (501)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEeeecc
Confidence 34789999999888 7999999766553
No 339
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=24.20 E-value=1.1e+02 Score=21.14 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=23.6
Q ss_pred ceecCHHHH-HHHHHHcCCceeEEEecCCcc
Q 040309 64 GKERSVDDW-KKLFLAAGFSHYKITPILGVR 93 (100)
Q Consensus 64 g~~rt~~e~-~~ll~~aGf~~~~v~~~~~~~ 93 (100)
...+|-.|. +.+|.+.|+..++|...+|.+
T Consensus 37 s~g~TGaevAr~iLd~nGl~dV~Ve~v~G~L 67 (226)
T COG2738 37 SSGLTGAEVARMILDENGLYDVPVEEVPGTL 67 (226)
T ss_pred cCCCcHHHHHHHHHhhcCCccceeeeecCCc
Confidence 445688887 778889999999998877643
No 340
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=24.19 E-value=1.2e+02 Score=20.08 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=24.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
..++.++...++.++.+.+... ++-+++|+|.+.
T Consensus 92 ~~~~~~~l~~~l~~l~~~l~~~-~~~~liVIDSis 125 (235)
T cd01123 92 RAYNSDHQLQLLEELEAILIES-SRIKLVIVDSVT 125 (235)
T ss_pred ecCCHHHHHHHHHHHHHHHhhc-CCeeEEEEeCcH
Confidence 3455666777888887777632 378999999875
No 341
>PRK06031 phosphoribosyltransferase; Provisional
Probab=24.18 E-value=2e+02 Score=19.90 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=13.4
Q ss_pred CCcEEEEEeeecCCCCC
Q 040309 27 EGGKVIIIDMAIENQSQ 43 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~ 43 (100)
+|-+++|+|-++..+++
T Consensus 153 ~GkrVLIVDDVitTG~T 169 (233)
T PRK06031 153 EGRRVALIDDVISSGAS 169 (233)
T ss_pred CCCEEEEEEeEccccHH
Confidence 58899999998876544
No 342
>PF05134 T2SL: Type II secretion system (T2SS), protein L; InterPro: IPR024230 The general secretion pathway of Gram-negative bacteria is responsible for extracellular secretion of a number of different proteins, including proteases and toxins. This pathway supports secretion of proteins across the cell envelope in two distinct steps, in which the second step, involving translocation through the outer membrane, is assisted by at least 13 different gene products. GspL is predicted to contain a large cytoplasmic domain and has been shown to interact with the autophosphorylating cytoplasmic membrane protein GspE. It is thought that the tri-molecular complex of GspL, GspE and GspM might be involved in regulating the opening and closing of the secretion pore and/or transducing energy to the site of outer membrane translocation []. This N-terminal domain is found in general secretion pathway protein L sequences from several Gram-negative bacteria. It is a cytoplasmic domain that shows structural homology with the superfamily of actin-like ATPases []. ; PDB: 2BH1_B 1YF5_L 1W97_L.
Probab=24.03 E-value=1e+02 Score=20.89 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHcCCceeEEEec
Q 040309 68 SVDDWKKLFLAAGFSHYKITPI 89 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~ 89 (100)
-.+.|.++|+++|++...+++-
T Consensus 113 ~l~~wl~~l~~~Gl~~~~v~Pd 134 (230)
T PF05134_consen 113 RLQRWLDALAAAGLEPDAVVPD 134 (230)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEG
T ss_pred HHHHHHHHHHHCCCcceEEEEc
Confidence 3678899999999999999873
No 343
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=24.01 E-value=75 Score=18.88 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHHHHhCC
Q 040309 5 NWNDEESVKLLKKCKEAIP 23 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~ 23 (100)
-|++++-+.||+.+..--.
T Consensus 6 ~WS~eDEi~iL~gl~~~~~ 24 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRA 24 (98)
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 5999999999999987544
No 344
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=23.98 E-value=1.8e+02 Score=18.83 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=23.2
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 36 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~ 36 (100)
..|=+-++..+++.++++..+ ++|+|++=.
T Consensus 69 ~~dpt~e~~~~~~~~~R~~a~----~~RvLFHYn 98 (154)
T PF14538_consen 69 SLDPTVEDLKRLCQSLRRNAK----DERVLFHYN 98 (154)
T ss_pred ecCCCHHHHHHHHHHHHhhCC----CceEEEEEC
Confidence 456677888999999998777 588888753
No 345
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=23.95 E-value=51 Score=21.93 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=14.3
Q ss_pred ccCChHHHHHHHHHHH
Q 040309 4 HNWNDEESVKLLKKCK 19 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~ 19 (100)
|+|..+.+.+.+++|+
T Consensus 135 ~~wtpe~A~~~vr~iR 150 (183)
T KOG1719|consen 135 KNWTPEAAVEHVRKIR 150 (183)
T ss_pred cCCCHHHHHHHHHhcC
Confidence 7899999999999874
No 346
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.81 E-value=99 Score=16.27 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHcCCcee
Q 040309 68 SVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~ 84 (100)
..++..+.|+++||++.
T Consensus 53 ~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 53 NPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHCCCeee
Confidence 45589999999999873
No 347
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=23.76 E-value=2.3e+02 Score=18.90 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=19.7
Q ss_pred ccccCceecCHHHHHHHHHHcCCceeEE
Q 040309 59 VSLFRGKERSVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 59 l~~~~g~~rt~~e~~~ll~~aGf~~~~v 86 (100)
-+..+|..+|.++.+++++ +|..-+-+
T Consensus 191 pvia~GGi~~~~di~~~~~-~Gadgv~i 217 (230)
T TIGR00007 191 PVIASGGVSSIDDLIALKK-LGVYGVIV 217 (230)
T ss_pred CEEEeCCCCCHHHHHHHHH-CCCCEEEE
Confidence 3455799999999999775 77655433
No 348
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=23.72 E-value=1.8e+02 Score=17.75 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHHhCCC--CCCCcEEEEEee
Q 040309 7 NDEESVKLLKKCKEAIPS--KDEGGKVIIIDM 36 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~--~~pgg~lli~e~ 36 (100)
+|+++.++++.+.++... . -+|+|+|.+.
T Consensus 66 ~D~~v~~vv~~I~~~a~TG~~-GDGkIfV~pV 96 (112)
T PRK10858 66 PDDIVDTCVDTIIRTAQTGKI-GDGKIFVFDV 96 (112)
T ss_pred ChHhHHHHHHHHHHHhccCCC-CCcEEEEEEh
Confidence 577777777777776663 2 3689998873
No 349
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=23.63 E-value=2.1e+02 Score=20.32 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCce--ecCHHHHHHHHHHcCCceeEEE
Q 040309 13 KLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGK--ERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 13 ~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~--~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
.+||++-+-+.- ..--++|+|+--.-..-+. ....-.|+..++...++ .||.+..++|-+++||+.+-++
T Consensus 120 allR~~l~~l~~--~~~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V 191 (255)
T COG3640 120 ALLRRLLRHLIL--NRYEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVV 191 (255)
T ss_pred HHHHHHHHHHhc--ccCcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 445555444441 2355666665321111110 11234677666665554 4899999999999997765543
No 350
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=23.62 E-value=1.8e+02 Score=19.01 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
+|+.+..|.+.+.+... ++++|+++-
T Consensus 8 s~~T~~~l~~~l~~~~~---~~~~iacls 33 (162)
T PF10237_consen 8 SDETAEFLARELLDGAL---DDTRIACLS 33 (162)
T ss_pred CHHHHHHHHHHHHHhcC---CCCEEEEEe
Confidence 66666667776666555 567777765
No 351
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=23.49 E-value=97 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCceeEEEecCC
Q 040309 71 DWKKLFLAAGFSHYKITPILG 91 (100)
Q Consensus 71 e~~~ll~~aGf~~~~v~~~~~ 91 (100)
--.++++++||+.+..+..++
T Consensus 126 ~~~~~~~k~GF~~~g~~~~~~ 146 (152)
T PF13523_consen 126 RAIRLYEKAGFRKVGEFEFPD 146 (152)
T ss_dssp HHHHHHHHTT-EEEEEEEESS
T ss_pred HHHHHHHHcCCEEeeEEECCC
Confidence 457788899999998876653
No 352
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=23.41 E-value=67 Score=16.11 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=10.1
Q ss_pred ChHHHHHHHHHHH
Q 040309 7 NDEESVKLLKKCK 19 (100)
Q Consensus 7 ~d~~~~~iL~~~~ 19 (100)
+|++|.+.|..++
T Consensus 2 ~e~~c~~~l~~~R 14 (46)
T PF12760_consen 2 DEEACREYLEEIR 14 (46)
T ss_pred CHHHHHHHHHHhc
Confidence 5778888888874
No 353
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=23.36 E-value=75 Score=17.10 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=13.4
Q ss_pred CCh-HHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 6 WND-EESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 6 w~d-~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
+++ ++..+|++= +. .||+|+|.+
T Consensus 47 ~~~~~~~~~l~~~----v~---~G~~lvl~a 70 (70)
T PF14258_consen 47 LSEPEEAEALLEW----VE---AGNTLVLAA 70 (70)
T ss_pred CCchHHHHHHHHH----HH---cCCEEEEeC
Confidence 453 555544443 33 589998863
No 354
>PLN02476 O-methyltransferase
Probab=23.30 E-value=2.9e+02 Score=19.77 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHc-CCce
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA-GFSH 83 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~a-Gf~~ 83 (100)
|-+..+-...+..+.+-|+ |||. +|+|.++-.+.-.++. . ...+.....+|.+++.+. +|..
T Consensus 201 Da~K~~Y~~y~e~~l~lL~---~GGv-IV~DNvL~~G~V~d~~-----~--------~d~~t~~ir~fn~~v~~d~~~~~ 263 (278)
T PLN02476 201 DADKRMYQDYFELLLQLVR---VGGV-IVMDNVLWHGRVADPL-----V--------NDAKTISIRNFNKKLMDDKRVSI 263 (278)
T ss_pred CCCHHHHHHHHHHHHHhcC---CCcE-EEEecCccCCcccCcc-----c--------CCHHHHHHHHHHHHHhhCCCEEE
Confidence 3444566788888888899 7776 4556666543322110 0 011122456776666554 4443
Q ss_pred eEEEecCCcceEE
Q 040309 84 YKITPILGVRSLI 96 (100)
Q Consensus 84 ~~v~~~~~~~~vi 96 (100)
.+.|++.+..++
T Consensus 264 -~llPigDGl~i~ 275 (278)
T PLN02476 264 -SMVPIGDGMTIC 275 (278)
T ss_pred -EEEEeCCeeEEE
Confidence 335776555544
No 355
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=23.25 E-value=98 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=22.5
Q ss_pred cccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 60 SLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 60 ~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
+...|+.| |.+.+|+..|+++.+..++.
T Consensus 180 ~l~eGk~r---qIRrm~~~~G~~V~~L~R~~ 207 (290)
T PRK10475 180 TLVQGLNR---QIRRMCEHFGYEVTKLERTR 207 (290)
T ss_pred EEECCcCH---HHHHHHHHcCCEEeEEEEEE
Confidence 44567755 89999999999999987763
No 356
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=23.20 E-value=1.3e+02 Score=21.92 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 27 EGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
+.++-+++|+..|.+..+ + ..+.+.+.. --+-..++++.+|+++++...++
T Consensus 17 ~~~~kv~VE~sSpNp~kp--l-HvGHlR~~i----------iGd~laril~~~G~~V~r~nyig 67 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKP--L-HVGHLRNTI----------IGDSLARILEAAGYDVTRENYIG 67 (354)
T ss_dssp TTSEEEEEEE---BTTSS----BHHHHHHHH----------HHHHHHHHHHHTTEEEEEEEEEB
T ss_pred CCCCEEEEEecCCCCCCC--C-cCCcchhhh----------hhHHHHHHHHHcCCeeeeEEEEC
Confidence 688999999998865443 1 122222110 12467899999999999998875
No 357
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=22.88 E-value=1e+02 Score=16.14 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=11.7
Q ss_pred cCHHHHHHHHHHcCCc
Q 040309 67 RSVDDWKKLFLAAGFS 82 (100)
Q Consensus 67 rt~~e~~~ll~~aGf~ 82 (100)
.|.++...||+..||.
T Consensus 4 w~~~~v~~WL~~~gl~ 19 (66)
T PF07647_consen 4 WSPEDVAEWLKSLGLE 19 (66)
T ss_dssp HCHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHCCcH
Confidence 4677777888877774
No 358
>PF15636 Tox-GHH: GHH signature containing HNH/Endo VII superfamily nuclease toxin
Probab=22.67 E-value=61 Score=18.64 Aligned_cols=14 Identities=43% Similarity=0.881 Sum_probs=12.4
Q ss_pred ccCChHHHHHHHHH
Q 040309 4 HNWNDEESVKLLKK 17 (100)
Q Consensus 4 Hdw~d~~~~~iL~~ 17 (100)
++|++++-.+||++
T Consensus 35 r~Wt~~Ek~ell~~ 48 (79)
T PF15636_consen 35 RNWTEEEKQELLST 48 (79)
T ss_pred CccCHHHHHHHHHc
Confidence 68999999999986
No 359
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=22.55 E-value=1e+02 Score=17.90 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.1
Q ss_pred cccCceecCHHHHHHHHHHcCCceeE
Q 040309 60 SLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 60 ~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
+-.|.+--+.+++...|-+|||.-.+
T Consensus 52 Vr~GaKH~~q~~Lnq~L~~Ag~~~LK 77 (84)
T PF13319_consen 52 VRIGAKHFDQEELNQRLIDAGWEGLK 77 (84)
T ss_pred HHhccccCCHHHHHHHHHHcCccccc
Confidence 34577888999999999999987544
No 360
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.51 E-value=1.4e+02 Score=20.77 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=21.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 40 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~ 40 (100)
|-+-+.-...+..+.+-|+ |||. +|+|.++-.
T Consensus 163 DadK~~Y~~y~~~~l~ll~---~GGv-iv~DNvl~~ 194 (247)
T PLN02589 163 DADKDNYINYHKRLIDLVK---VGGV-IGYDNTLWN 194 (247)
T ss_pred cCCHHHhHHHHHHHHHhcC---CCeE-EEEcCCCCC
Confidence 3344556777888888888 6665 666776644
No 361
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=80 Score=21.30 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=21.4
Q ss_pred ccccCceecCHHHHHHHHHHcCCceeE
Q 040309 59 VSLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 59 l~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
|.+..-|-+|.+.|.+....+||.+..
T Consensus 137 l~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 137 LLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred eEecCcccchHHHHHHHHHhceeEEEe
Confidence 344556778999999999999998754
No 362
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=22.16 E-value=63 Score=21.06 Aligned_cols=18 Identities=33% Similarity=0.846 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCceeEE
Q 040309 69 VDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 69 ~~e~~~ll~~aGf~~~~v 86 (100)
.++|.+.++++||+.+.|
T Consensus 142 ~~~w~~~l~~~~~~~vDv 159 (163)
T PF14826_consen 142 VDEWKEALKKSGFEKVDV 159 (163)
T ss_dssp HHHHHHHHCHHCSEEEE-
T ss_pred HHHHHHHHhhcCCceeec
Confidence 468999999999988876
No 363
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=22.04 E-value=1.9e+02 Score=18.29 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=15.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
|.||+++.+.-|=++.+.++ ++.-|+++
T Consensus 103 ~~~P~~~~iD~fi~~v~~~p---~~~~l~fh 130 (149)
T PF14566_consen 103 HQAPDPEDIDAFINFVKSLP---KDTWLHFH 130 (149)
T ss_dssp TS---HHHHHHHHHHHHTS----TT-EEEEE
T ss_pred cCCCCHHHHHHHHHHHHhCC---CCCeEEEE
Confidence 67888887777777777777 66555544
No 364
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=21.96 E-value=1.3e+02 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeee
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIIIDMA 37 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~e~v 37 (100)
..++.+.+++.|+. +||.++|.-+.
T Consensus 115 le~fy~~~~rvLRk--~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 115 LERFYKEAYRVLRK--DGGLIAVWNYN 139 (261)
T ss_pred hHHHHHHHHHHcCC--CCCEEEEEEcc
Confidence 36788999999993 66677776654
No 365
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=21.83 E-value=1.6e+02 Score=20.06 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 7 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 7 ~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
+.+....++++++++++ |.+++|.++...
T Consensus 126 ~~~~~~~lv~~Lr~~~~---~~~kllt~~~~~ 154 (255)
T cd06542 126 SNEAFVRLIKELRKYMG---PTDKLLTIDGYG 154 (255)
T ss_pred hHHHHHHHHHHHHHHhC---cCCcEEEEEecC
Confidence 34567899999999998 778999988543
No 366
>PRK04140 hypothetical protein; Provisional
Probab=21.72 E-value=94 Score=22.69 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=21.3
Q ss_pred ecCHHHHHHHHHHcCCceeEEEec-CCcceEE
Q 040309 66 ERSVDDWKKLFLAAGFSHYKITPI-LGVRSLI 96 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~v~~~-~~~~~vi 96 (100)
++-..+..++|..|||.+...... +..+.++
T Consensus 3 ~~li~~v~~~L~~~gf~vs~~~~~~~~~fdi~ 34 (317)
T PRK04140 3 EALISEVIALLEDAGFKVSDRCPIRPSCFDLV 34 (317)
T ss_pred HHHHHHHHHHHHHCCCEEEeeccCCCceEEEE
Confidence 445678899999999999874332 2345554
No 367
>PF11193 DUF2812: Protein of unknown function (DUF2812); InterPro: IPR021359 This is a bacterial family of uncharacterised proteins, however some members of this family are annotated as membrane proteins.
Probab=21.71 E-value=96 Score=18.48 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=17.4
Q ss_pred eecCHHHHHHHHHHcCCceeE
Q 040309 65 KERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 65 ~~rt~~e~~~ll~~aGf~~~~ 85 (100)
.....+++.++++++|++.+.
T Consensus 49 ~~~~~~~y~~~~e~~GW~~v~ 69 (115)
T PF11193_consen 49 SKEEQKEYLEFFEEAGWEYVY 69 (115)
T ss_pred chhhhHHHHHHHHHCCCEEEe
Confidence 344678999999999999983
No 368
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=21.70 E-value=2.7e+02 Score=18.85 Aligned_cols=63 Identities=8% Similarity=0.021 Sum_probs=29.8
Q ss_pred CCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeEEEecC
Q 040309 27 EGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPIL 90 (100)
Q Consensus 27 pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~v~~~~ 90 (100)
+|-+++|+|-++..+++-....+.-...........---.|. +.+.+-++++|+.+..+....
T Consensus 117 ~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~-~~~~~~l~~~gi~v~sl~~~~ 179 (206)
T PRK13809 117 PGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQ-KGACQPLGPQGIKLSSVFTVP 179 (206)
T ss_pred CCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECc-ccHHHHHHhcCCCEEEEEEHH
Confidence 678899999888765542110000000011100000001233 235566677888877776543
No 369
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=21.52 E-value=1.2e+02 Score=22.56 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=24.5
Q ss_pred ccC-ChHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 040309 4 HNW-NDEESVKLLKKCKEAIPSKDEGGKVIIID 35 (100)
Q Consensus 4 Hdw-~d~~~~~iL~~~~~al~~~~pgg~lli~e 35 (100)
.|| +|.+...++.++.+.+. +|.+++.--
T Consensus 337 qdwmtd~qln~lws~isrta~---~gA~VifRt 366 (414)
T COG5379 337 QDWMTDGQLNSLWSEISRTAE---AGARVIFRT 366 (414)
T ss_pred hhhcccchHHHHHHHHhhccC---CCcEEEEec
Confidence 466 78899999999999999 899888754
No 370
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.47 E-value=2e+02 Score=21.68 Aligned_cols=30 Identities=3% Similarity=-0.026 Sum_probs=22.2
Q ss_pred CceecCHHHHHHHHHHc-CCceeEEEecCCc
Q 040309 63 RGKERSVDDWKKLFLAA-GFSHYKITPILGV 92 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~a-Gf~~~~v~~~~~~ 92 (100)
-|+.-+.+++++.|++. +++.+-+++..+.
T Consensus 113 wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETS 143 (383)
T COG0075 113 WGEAVDPEEVEEALDKDPDIKAVAVVHNETS 143 (383)
T ss_pred CCCCCCHHHHHHHHhcCCCccEEEEEeccCc
Confidence 37788888998888844 6888877766543
No 371
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=21.32 E-value=1.7e+02 Score=19.57 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIE 39 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~ 39 (100)
.+-++++...|+ |||+|++.=.+-+
T Consensus 91 l~~m~~i~~vLK---~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 91 LRAMAKIKCVLK---PGGLLFLGVPVGT 115 (177)
T ss_pred HHHHHHHHHhhc---cCCeEEEEeecCC
Confidence 445667788899 8999998766654
No 372
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.28 E-value=1.5e+02 Score=15.76 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHcCCceeEEEecCC
Q 040309 68 SVDDWKKLFLAAGFSHYKITPILG 91 (100)
Q Consensus 68 t~~e~~~ll~~aGf~~~~v~~~~~ 91 (100)
+.++..+|+++.||+. .+....+
T Consensus 37 s~~~i~~~~~~~G~~~-~~~~~~~ 59 (67)
T cd03421 37 AKENVSRFAESRGYEV-SVEEKGG 59 (67)
T ss_pred HHHHHHHHHHHcCCEE-EEEecCC
Confidence 3457788889999998 5555544
No 373
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=21.23 E-value=1.5e+02 Score=19.05 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=21.3
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 040309 2 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 37 (100)
Q Consensus 2 vlHdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v 37 (100)
-||+.||.=..+|-+++.++=+. ..+.||+.-..
T Consensus 6 gLH~~p~~L~~~lq~~id~~~~~--~d~Ill~YG~C 39 (166)
T PF07796_consen 6 GLHNDPDKLRKELQEEIDKASKD--YDGILLFYGLC 39 (166)
T ss_pred hhcCCHHHHHHHHHHHHHHhhcc--CCeEEEEEeCC
Confidence 38999988777777777665431 34555555543
No 374
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=21.23 E-value=88 Score=19.87 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=17.6
Q ss_pred cccCChHHHHHHHHHHHHhCC
Q 040309 3 LHNWNDEESVKLLKKCKEAIP 23 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~ 23 (100)
||+--+..+..|...+++||.
T Consensus 14 LHHiEPKRVKvIVeEv~qalt 34 (149)
T PF03574_consen 14 LHHIEPKRVKVIVEEVRQALT 34 (149)
T ss_dssp HTT--HHHHHHHHHHHHHHHS
T ss_pred ccccCchhhhhHHHHHHHHHh
Confidence 688888889999999999999
No 375
>PRK03341 arginine repressor; Provisional
Probab=21.20 E-value=69 Score=21.13 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.3
Q ss_pred CceecCHHHHHHHHHHcCCceeE
Q 040309 63 RGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 63 ~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
.-...|.+|+.+.|++.||.+.+
T Consensus 26 ~~~i~tQ~eL~~~L~~~Gi~vTQ 48 (168)
T PRK03341 26 RQSVRSQAELAALLADEGIEVTQ 48 (168)
T ss_pred HCCCccHHHHHHHHHHcCCcccH
Confidence 45667999999999999987643
No 376
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=21.11 E-value=1.1e+02 Score=16.88 Aligned_cols=25 Identities=16% Similarity=0.607 Sum_probs=15.7
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCcEEEE
Q 040309 3 LHNWNDEESVKLLKKCKEAIPSKDEGGKVII 33 (100)
Q Consensus 3 lHdw~d~~~~~iL~~~~~al~~~~pgg~lli 33 (100)
+|+|+.. +=-+..++.|. .|-.=++
T Consensus 36 mhHWn~q---rkt~~fY~~Le---kgeisVv 60 (63)
T PLN03155 36 MHHWNEQ---RKTRSFYDLLE---KGEISVV 60 (63)
T ss_pred HhhhhhH---HHHHHHHHHHh---cCceEEe
Confidence 5889884 44566677777 4543333
No 377
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=20.90 E-value=3.3e+02 Score=21.90 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecCHHHHHHHHHHcCCceeE
Q 040309 10 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 10 ~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
.|..++.+....+. ||++.-.....++....++ ....+++.-+--.=|.+.|.+|..++|++.||+...
T Consensus 232 ~al~~~~~ll~e~~----gg~v~~~~~~~~~~~~~~~---~~i~~~~~~i~~llG~~ls~eei~~iL~rLg~~~~~ 300 (650)
T COG0072 232 KALNRATTLLAEIC----GGEVSSVVIVGGDEKLTPP---RKIELRLERINRLLGLELSAEEIEKILKRLGFKVEV 300 (650)
T ss_pred HHHHHHHHHHHHhc----CCeeeeEEEecCCcCCCCC---ceEEecHHHHHHHhCCCCCHHHHHHHHHHcCCeeEe
Confidence 35555555555555 5777766665544322111 011112211112237889999999999999998774
No 378
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.82 E-value=1.9e+02 Score=17.04 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=25.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 040309 5 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 38 (100)
Q Consensus 5 dw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~ 38 (100)
+.+|++..+++.++...+.. .||.++-.|..-
T Consensus 17 ~l~e~~~~~~~~~~~~~i~~--~gg~i~~~~~wG 48 (97)
T CHL00123 17 DLNEEELLKWIENYKKLLRK--RGAKNISVQNRG 48 (97)
T ss_pred CCCHHHHHHHHHHHHHHHHH--CCCEEEEEEeec
Confidence 45788899999999998874 588888877653
No 379
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=20.82 E-value=96 Score=18.72 Aligned_cols=27 Identities=26% Similarity=0.178 Sum_probs=21.1
Q ss_pred cccCceecCHHHHHHHHHHcCCceeEE
Q 040309 60 SLFRGKERSVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 60 ~~~~g~~rt~~e~~~ll~~aGf~~~~v 86 (100)
+...|..-|.++..++|+.+|.++...
T Consensus 11 L~d~~~~~Tae~I~~ilkAaGveve~~ 37 (103)
T cd05831 11 LHDDGIEITADNINALLKAAGVNVEPY 37 (103)
T ss_pred HccCCCCCCHHHHHHHHHHcCCcccHH
Confidence 334588889999999999999766543
No 380
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.77 E-value=98 Score=13.62 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=8.2
Q ss_pred CCcEEEEEee
Q 040309 27 EGGKVIIIDM 36 (100)
Q Consensus 27 pgg~lli~e~ 36 (100)
++|.|+|.|.
T Consensus 11 ~~g~i~VaD~ 20 (28)
T PF01436_consen 11 SDGNIYVADS 20 (28)
T ss_dssp TTSEEEEEEC
T ss_pred CCCCEEEEEC
Confidence 5899999983
No 381
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=20.72 E-value=3.7e+02 Score=20.13 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=29.5
Q ss_pred cEEEEEeeecCCCCCCchhh-hh-hhhhh-------hhcccccCceecCHHHHHHHHHHc
Q 040309 29 GKVIIIDMAIENQSQDKESM-ET-QLCFD-------ILMVSLFRGKERSVDDWKKLFLAA 79 (100)
Q Consensus 29 g~lli~e~v~~~~~~~~~~~-~~-~~~~d-------l~ml~~~~g~~rt~~e~~~ll~~a 79 (100)
-+|+++|...+-.... +.. +. ..+.+ ..-....+|+.-|.+++.++++..
T Consensus 312 k~ViVvE~n~~~Gq~g-~l~~ev~~~l~~~~~~~~~~~~i~g~gGr~~t~~~i~~~~~~~ 370 (390)
T PRK08366 312 KGIAVLDRNFSFGQEG-ILFTEAKGALYNTDARPIMKNYIVGLGGRDFTVNDVKAIAEDM 370 (390)
T ss_pred CEEEEEeCCCCCCccc-HHHHHHHHHHhccCCCCceeceEeCcCCccCCHHHHHHHHHHH
Confidence 4788899876522222 221 11 12212 122334579999999999999864
No 382
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=52 Score=22.98 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEE
Q 040309 11 SVKLLKKCKEAIPSKDEGGKVIII 34 (100)
Q Consensus 11 ~~~iL~~~~~al~~~~pgg~lli~ 34 (100)
+.++.++...-|+ +||+++|-
T Consensus 172 a~~~pq~l~dqL~---~gGrllip 192 (237)
T KOG1661|consen 172 ASELPQELLDQLK---PGGRLLIP 192 (237)
T ss_pred ccccHHHHHHhhc---cCCeEEEe
Confidence 4677788888899 89999874
No 383
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=20.63 E-value=1e+02 Score=21.50 Aligned_cols=26 Identities=8% Similarity=0.026 Sum_probs=21.5
Q ss_pred cccCceecCHHHHHHHHHHcCCceeE
Q 040309 60 SLFRGKERSVDDWKKLFLAAGFSHYK 85 (100)
Q Consensus 60 ~~~~g~~rt~~e~~~ll~~aGf~~~~ 85 (100)
-..+|.+++..+|.+++++.|.+..-
T Consensus 157 hSD~Gsqy~s~~~~~~l~~~gI~~Sm 182 (262)
T PRK14702 157 LTDNGSCYRANETRQFARMLGLEPKN 182 (262)
T ss_pred EcCCCcccchHHHHHHHHHcCCeecc
Confidence 34569999999999999999977643
No 384
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.55 E-value=1.3e+02 Score=21.86 Aligned_cols=76 Identities=7% Similarity=0.099 Sum_probs=41.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhh-hhhhhcccccCceecCHHHHHHHHHHcCCc
Q 040309 4 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL-CFDILMVSLFRGKERSVDDWKKLFLAAGFS 82 (100)
Q Consensus 4 Hdw~d~~~~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~~~~~~~~-~~dl~ml~~~~g~~rt~~e~~~ll~~aGf~ 82 (100)
.+|+++++.++.+.+.+-+.+ .||.+++.-.-..++.... .... +-...+ +.-+++.-...=|-++|..|.+-
T Consensus 175 f~~~~d~a~q~~~~l~k~l~~--~g~~~lisfSRRTp~~~~s---~l~~~l~s~~~-i~w~~~d~g~NPY~~~La~Adyi 248 (329)
T COG3660 175 FVFQEDKAHQFASLLVKILEN--QGGSFLISFSRRTPDTVKS---ILKNNLNSSPG-IVWNNEDTGYNPYIDMLAAADYI 248 (329)
T ss_pred CccCHHHHHHHHHHHHHHHHh--CCceEEEEeecCCcHHHHH---HHHhccccCce-eEeCCCCCCCCchHHHHhhcceE
Confidence 479999999998888888885 6888887654322111100 0000 111111 12234433445677777777755
Q ss_pred eeE
Q 040309 83 HYK 85 (100)
Q Consensus 83 ~~~ 85 (100)
+..
T Consensus 249 i~T 251 (329)
T COG3660 249 IST 251 (329)
T ss_pred EEe
Confidence 543
No 385
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=20.52 E-value=2.2e+02 Score=19.46 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=8.7
Q ss_pred CCcEEEEEeeec
Q 040309 27 EGGKVIIIDMAI 38 (100)
Q Consensus 27 pgg~lli~e~v~ 38 (100)
|.|..||+...-
T Consensus 7 p~g~alII~n~~ 18 (241)
T smart00115 7 PRGLALIINNEN 18 (241)
T ss_pred CCcEEEEEECcc
Confidence 678888887653
No 386
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=20.50 E-value=44 Score=24.54 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=24.7
Q ss_pred ecCHHHHHHHHHHcCCceeEEEecCCcceE
Q 040309 66 ERSVDDWKKLFLAAGFSHYKITPILGVRSL 95 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~v~~~~~~~~v 95 (100)
.-+..+..+.|...||...+++-+.|.++|
T Consensus 147 ~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTi 176 (328)
T cd00692 147 FDSVDKILARFADAGFSPDELVALLAAHSV 176 (328)
T ss_pred CCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 346899999999999999998887766654
No 387
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=20.49 E-value=2.7e+02 Score=18.47 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=19.0
Q ss_pred ceecCHHHHHHHHHHcCCceeEE
Q 040309 64 GKERSVDDWKKLFLAAGFSHYKI 86 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aGf~~~~v 86 (100)
++.+|.++|++||++.|=-.+.+
T Consensus 93 ~~~~t~e~~~~LL~~yGPLwv~~ 115 (166)
T PF12385_consen 93 NASYTAEGLANLLREYGPLWVAW 115 (166)
T ss_pred ccccCHHHHHHHHHHcCCeEEEe
Confidence 68999999999999999544443
No 388
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=20.49 E-value=81 Score=19.30 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=20.3
Q ss_pred cccccCce-ecCHHHHHHHHHHcCCcee
Q 040309 58 MVSLFRGK-ERSVDDWKKLFLAAGFSHY 84 (100)
Q Consensus 58 ml~~~~g~-~rt~~e~~~ll~~aGf~~~ 84 (100)
+|...+|+ .-|.++..++|+.+|-++.
T Consensus 8 lL~~l~g~~~pTa~dI~~IL~AaGveVe 35 (109)
T cd05833 8 LLAVLGGNASPSAADVKKILGSVGVEVD 35 (109)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHcCCCcc
Confidence 34445555 8899999999999995544
No 389
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=20.33 E-value=3.9e+02 Score=20.17 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc------hhhh--hhhhhhhhc--------c--cccCceecCHHHHH
Q 040309 12 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK------ESME--TQLCFDILM--------V--SLFRGKERSVDDWK 73 (100)
Q Consensus 12 ~~iL~~~~~al~~~~pgg~lli~e~v~~~~~~~~------~~~~--~~~~~dl~m--------l--~~~~g~~rt~~e~~ 73 (100)
..+|+.=++-|. |||++++.=.-.++..... .+.. ...+.|+.- + .+..-..+|.+|++
T Consensus 217 ~~FL~~Ra~ELv---pGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~ 293 (386)
T PLN02668 217 AGFLRARAQEMK---RGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFK 293 (386)
T ss_pred HHHHHHHHHHhc---cCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHH
Confidence 445665567788 8999999876554311110 0000 011222211 0 01224578999999
Q ss_pred HHHHHcC-CceeEEE
Q 040309 74 KLFLAAG-FSHYKIT 87 (100)
Q Consensus 74 ~ll~~aG-f~~~~v~ 87 (100)
+++++.| |.+.++.
T Consensus 294 ~~Ie~~gsF~I~~le 308 (386)
T PLN02668 294 EVVEANGSFAIDKLE 308 (386)
T ss_pred HHHhhcCCEEeeeeE
Confidence 9999887 7776654
No 390
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=20.27 E-value=99 Score=17.46 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=8.6
Q ss_pred cCHH---HHHHHHHHcCCcee
Q 040309 67 RSVD---DWKKLFLAAGFSHY 84 (100)
Q Consensus 67 rt~~---e~~~ll~~aGf~~~ 84 (100)
-|.+ .+.++|+++||...
T Consensus 48 Lt~eqv~~LN~~l~~~Gf~~~ 68 (73)
T PF14794_consen 48 LTEEQVAKLNQALQKAGFDEE 68 (73)
T ss_dssp --HHHHHHHHHHHHHTT----
T ss_pred cCHHHHHHHHHHHHHcCCCce
Confidence 4554 45677889999753
No 391
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.23 E-value=89 Score=22.29 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=8.1
Q ss_pred ceecCHHHHHHHHHHcC
Q 040309 64 GKERSVDDWKKLFLAAG 80 (100)
Q Consensus 64 g~~rt~~e~~~ll~~aG 80 (100)
-+.|+....+..|..+|
T Consensus 132 nknr~~~~iRs~~nk~G 148 (276)
T KOG2972|consen 132 NKNRAASSIRSIFNKHG 148 (276)
T ss_pred cHhHHHHHHHHHHHHcC
Confidence 34444444555554444
No 392
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=20.18 E-value=3.4e+02 Score=21.34 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=32.1
Q ss_pred cEEEEEeeecCCCCCCchhhhhhhhhhhhcccccCceecC---HHHHHHHHHHcCCceeEEEecCC
Q 040309 29 GKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERS---VDDWKKLFLAAGFSHYKITPILG 91 (100)
Q Consensus 29 g~lli~e~v~~~~~~~~~~~~~~~~~dl~ml~~~~g~~rt---~~e~~~ll~~aGf~~~~v~~~~~ 91 (100)
++-+++|++.|....+ + .=|..|+ -+-..++|+.+|+.+++...++.
T Consensus 112 ~~~v~vE~sSpNp~kp--l--------------HvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD 161 (562)
T PRK12451 112 EKTVVIDYSSPNIAKP--F--------------SMGHLRSTMIGNALKHIAEKCGYEVVGINYIGD 161 (562)
T ss_pred CCEEEEEecCCCCCCC--c--------------ccchhhhHHHHHHHHHHHHHCCCCeEEEeeecC
Confidence 5667899998764432 1 1133332 35678999999999999988753
No 393
>PLN02879 L-ascorbate peroxidase
Probab=20.18 E-value=58 Score=22.95 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=24.5
Q ss_pred ecCHHHHHHHHHHcCCceeEEEecCCcceE
Q 040309 66 ERSVDDWKKLFLAAGFSHYKITPILGVRSL 95 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~v~~~~~~~~v 95 (100)
.-+.++..+.|...||...+++-+.|.+++
T Consensus 136 ~~~~~~l~~~F~~~Gl~~~dlVALsGaHTi 165 (251)
T PLN02879 136 TKGVDHLRDVFGRMGLNDKDIVALSGGHTL 165 (251)
T ss_pred CCCHHHHHHHHHHcCCCHHHHeeeeccccc
Confidence 347889999999999999998887665554
No 394
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=20.09 E-value=1.2e+02 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.3
Q ss_pred ecCHHHHHHHHHHcCCceeEEE
Q 040309 66 ERSVDDWKKLFLAAGFSHYKIT 87 (100)
Q Consensus 66 ~rt~~e~~~ll~~aGf~~~~v~ 87 (100)
+.+.+|..+|.+.||++++...
T Consensus 16 ~~~~~E~~~L~~~~~~~v~~~~ 37 (351)
T TIGR03156 16 EESLEELAELAETAGAEVVGTV 37 (351)
T ss_pred hhhHHHHHHHHHHCCCEEEEEE
Confidence 3679999999999999999864
Done!