BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040310
         (138 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1W|B Chain B, The Solution Structure Of Soybean Calmodulin Isoform 4
          Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
          Length = 25

 Score = 29.3 bits (64), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 20 ALERWRILSGFVKNRKRRFRFTANL 44
          A +RWR     VKNR RRFR  +NL
Sbjct: 1  ARQRWRSSVSIVKNRARRFRMISNL 25


>pdb|4AQR|D Chain D, Crystal Structure Of A Calmodulin In Complex With The
          Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
          Length = 57

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 17 SEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRR-------ANLAVNLFF 64
          S E L++WR  +  V N  RRFR+T +L K  E   +R+       A LA N F 
Sbjct: 2  SIERLQQWRK-AALVLNASRRFRYTLDLKKEQETREMRQKIRSHAHALLAANRFM 55


>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
          Length = 139

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/15 (66%), Positives = 14/15 (93%)

Query: 96  KNPIGQDQLSLTKKV 110
           KNP+G+DQ++LT KV
Sbjct: 123 KNPVGEDQVNLTVKV 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,631,248
Number of Sequences: 62578
Number of extensions: 121908
Number of successful extensions: 257
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 6
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)