Query 040310
Match_columns 138
No_of_seqs 90 out of 103
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 07:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12515 CaATP_NAI: Ca2+-ATPas 99.8 4.9E-21 1.1E-25 125.4 2.6 45 4-49 1-46 (47)
2 KOG0204 Calcium transporting A 97.7 2.2E-05 4.7E-10 75.9 3.4 64 3-68 1-72 (1034)
3 PF04081 DNA_pol_delta_4: DNA 61.0 4.4 9.5E-05 31.5 1.1 33 6-39 68-104 (124)
4 PF09846 DUF2073: Uncharacteri 37.8 20 0.00043 27.3 1.4 40 94-137 46-85 (104)
5 PF07742 BTG: BTG family; Int 36.0 38 0.00082 25.5 2.7 9 91-99 44-52 (118)
6 PF10579 Rapsyn_N: Rapsyn N-te 25.0 38 0.00081 24.6 1.0 26 16-41 21-46 (80)
7 PF09022 Staphostatin_A: Staph 18.7 45 0.00098 25.4 0.3 11 89-99 25-35 (105)
8 TIGR02816 pfaB_fam PfaB family 18.6 57 0.0012 30.4 1.0 45 69-118 263-308 (538)
9 smart00099 btg1 tob/btg1 famil 18.6 3E+02 0.0065 20.8 4.7 9 91-99 44-52 (108)
10 PF12621 DUF3779: Phosphate me 18.3 71 0.0015 22.8 1.3 26 79-104 27-60 (95)
No 1
>PF12515 CaATP_NAI: Ca2+-ATPase N terminal autoinhibitory domain; InterPro: IPR024750 This entry represents the N-terminal autoinhibitory calmodulin-binding domain characteristic of certain calcium-transporting ATPases []. This domain binds calmodulin in a calcium-dependent fashion and has a conserved RRFR sequence motif. There are two completely conserved residues (F and W) that may be functionally important.; GO: 0005516 calmodulin binding
Probab=99.82 E-value=4.9e-21 Score=125.39 Aligned_cols=45 Identities=60% Similarity=1.026 Sum_probs=43.1
Q ss_pred ccccccCCCCCC-CcHHHHHHHHHHhhhhcccccccchhhhhhhhHH
Q 040310 4 YLNENFGFVKQK-KSEEALERWRILSGFVKNRKRRFRFTANLAKRSE 49 (138)
Q Consensus 4 ~l~e~F~~I~~K-~S~EaLrRWR~Aa~lVlN~sRRFRytadL~Kr~e 49 (138)
|++++|+ |++| +|+|+|+|||+|++||+||+||||||+||+|+++
T Consensus 1 yl~~~Fd-i~~Kn~s~e~l~rWR~a~~lv~N~~RRFR~~~dL~k~~e 46 (47)
T PF12515_consen 1 YLDDNFD-IPAKNSSEEALRRWRQAVGLVKNARRRFRYTADLKKREE 46 (47)
T ss_pred CCccccC-CCCCCCCHHHHHHHHHHhHHhccccceeeecccHhhHhc
Confidence 6889999 9999 9999999999999999999999999999999885
No 2
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.73 E-value=2.2e-05 Score=75.90 Aligned_cols=64 Identities=41% Similarity=0.528 Sum_probs=54.1
Q ss_pred cccccccCCCCCC-CcHHHHHHHHHHhhhhcccccccchhhhhhhhHHHHHHHHHH-------HHhHHHHhhhh
Q 040310 3 YYLNENFGFVKQK-KSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN-------LAVNLFFRRER 68 (138)
Q Consensus 3 ~~l~e~F~~I~~K-~S~EaLrRWR~Aa~lVlN~sRRFRytadL~Kr~e~e~kRrki-------~~~~~f~~a~~ 68 (138)
++++++|. ...+ +|.+++++||.| .+++|++|||||+++|++..+..++|+++ .+..+|++++.
T Consensus 1 s~~~~~~~-~~~~n~~~~~~~~~~~a-~~~~~~~~~~~~~~~l~~~~~~~~~r~~~r~~~~~~~a~~~~~~~~~ 72 (1034)
T KOG0204|consen 1 SLLDKDFV-VSMKNSSIEALQRWRLA-YIVLEASRRFRFGASLKKLRELMEPRRKIRSAVLVSKAAALFIDAGS 72 (1034)
T ss_pred CCcccccc-cccccchhhhhhhhhhh-hhhcccchhhccccCHHHHHHHHHHHhhhhhhhcccchhhhhhcccc
Confidence 35678887 7777 999999999966 59999999999999999999999999877 55667777753
No 3
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=61.03 E-value=4.4 Score=31.48 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=25.7
Q ss_pred ccccCCCCCC--Cc--HHHHHHHHHHhhhhcccccccc
Q 040310 6 NENFGFVKQK--KS--EEALERWRILSGFVKNRKRRFR 39 (138)
Q Consensus 6 ~e~F~~I~~K--~S--~EaLrRWR~Aa~lVlN~sRRFR 39 (138)
...|| +.++ |- .-+++||.+|..|-|||.=-.+
T Consensus 68 Lr~FD-l~~~yGPC~GitRl~RW~RA~~lgL~PP~ev~ 104 (124)
T PF04081_consen 68 LRQFD-LSSQYGPCIGITRLERWERAKRLGLNPPIEVL 104 (124)
T ss_pred HHHhc-cccccCCccCchHHHHHHHHHHcCCCCCHHHH
Confidence 35788 8877 44 4599999999889999876554
No 4
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.80 E-value=20 Score=27.29 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=31.6
Q ss_pred CCCCCCCcccchhhhhhcccccccchhhhhccCCCcceeeeccc
Q 040310 94 EPKNPIGQDQLSLTKKVNKPKASDKRKRKVMNQETTHRITWFGT 137 (138)
Q Consensus 94 ~Pee~~g~~~~~~~r~~l~~~as~g~~~~~mn~~~~~~~~~~~~ 137 (138)
=|++=.||.+++.-.+. +..|=...+|++..+.|+|-.|.
T Consensus 46 ~~d~F~GIEiesyp~~~----~~~~f~~rl~gk~~~~rlTVIGP 85 (104)
T PF09846_consen 46 DPDEFSGIEIESYPSKE----ADKSFLGRLLGKKSRERLTVIGP 85 (104)
T ss_pred CccccCceEEEecCccc----ccccHHHHHhCCCCCCCeEEEcc
Confidence 37788899999765544 66677778999999999998874
No 5
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=36.05 E-value=38 Score=25.49 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=6.3
Q ss_pred cccCCCCCC
Q 040310 91 NQHEPKNPI 99 (138)
Q Consensus 91 gvw~Pee~~ 99 (138)
|-|||++|.
T Consensus 44 ~HW~P~~P~ 52 (118)
T PF07742_consen 44 GHWYPENPS 52 (118)
T ss_dssp TS--TTSTT
T ss_pred CCCCCCCCC
Confidence 999999986
No 6
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=25.01 E-value=38 Score=24.56 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=19.9
Q ss_pred CcHHHHHHHHHHhhhhcccccccchh
Q 040310 16 KSEEALERWRILSGFVKNRKRRFRFT 41 (138)
Q Consensus 16 ~S~EaLrRWR~Aa~lVlN~sRRFRyt 41 (138)
-..+++..|++|..-.-++.-||+-.
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~l 46 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVL 46 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 35579999999987677777788733
No 7
>PF09022 Staphostatin_A: Staphostatin A; InterPro: IPR015112 The staphostatin A polypeptide chain folds into a slightly deformed, eight-stranded beta-barrel, with strands beta-4 through beta-8 forming an antiparallel sheet while the N terminus forms a psi-loop motif. Members of this family constitute a class of cysteine protease inhibitors distinct in the fold and the mechanism of action from any known inhibitors of these enzymes []. ; PDB: 1OH1_A.
Probab=18.70 E-value=45 Score=25.44 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=8.6
Q ss_pred HhcccCCCCCC
Q 040310 89 LTNQHEPKNPI 99 (138)
Q Consensus 89 ~~gvw~Pee~~ 99 (138)
+.|+|+|++-+
T Consensus 25 leG~W~P~~~~ 35 (105)
T PF09022_consen 25 LEGNWHPQDFN 35 (105)
T ss_dssp TBEEESSSTTT
T ss_pred hcccccccccC
Confidence 34999999854
No 8
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=18.62 E-value=57 Score=30.35 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=27.9
Q ss_pred ccCccchhhhhhhHHHHHHHHhccc-CCCCCCCcccchhhhhhcccccccc
Q 040310 69 LIEPEILNNQHSDGLIKAKMLTNQH-EPKNPIGQDQLSLTKKVNKPKASDK 118 (138)
Q Consensus 69 ~~~~~~~~~s~svG~~tAaf~~gvw-~Pee~~g~~~~~~~r~~l~~~as~g 118 (138)
++.|+.. --||+|=.+|+++.||| .|+.- +.+ ..|..|+..+.-|
T Consensus 263 GI~Pdav-~GHSlGE~aAa~aAGvls~~dal--~~v--~~rs~L~~~~~rG 308 (538)
T TIGR02816 263 AIKPDFA-LGYSKGEASMWASLGVWKNPHAL--IEK--TQTDPIFTSAISG 308 (538)
T ss_pred CCCCCEE-eecCHHHHHHHHHhCCCCcHHHH--HHH--HHhhHHhccccCh
Confidence 4555533 36899999999999999 44431 122 2555555544434
No 9
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=18.55 E-value=3e+02 Score=20.77 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=8.4
Q ss_pred cccCCCCCC
Q 040310 91 NQHEPKNPI 99 (138)
Q Consensus 91 gvw~Pee~~ 99 (138)
|-|||++|.
T Consensus 44 ~HWyP~~P~ 52 (108)
T smart00099 44 NHWYPEKPY 52 (108)
T ss_pred cCCCCCCCC
Confidence 999999986
No 10
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=18.29 E-value=71 Score=22.80 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHh--------cccCCCCCCCcccc
Q 040310 79 HSDGLIKAKMLT--------NQHEPKNPIGQDQL 104 (138)
Q Consensus 79 ~svG~~tAaf~~--------gvw~Pee~~g~~~~ 104 (138)
.......-||.- -||.|+++-|+...
T Consensus 27 ~~~~~~~~ay~~Pa~~~~~P~lWIP~D~~GvS~~ 60 (95)
T PF12621_consen 27 YPEEEHKHAYLHPAVSAPQPILWIPRDPLGVSRQ 60 (95)
T ss_pred CCHHHHHhccCCHhHcCCCCeEEeecCCCCCCHH
Confidence 344455555554 89999999999876
Done!