Query 040310
Match_columns 138
No_of_seqs 90 out of 103
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 11:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aqr_D Calcium-transporting AT 99.8 4.2E-19 1.4E-23 119.4 4.0 51 16-67 1-51 (57)
2 2l1w_B Vacuolar calcium ATPase 98.9 1.5E-10 5.1E-15 66.9 0.5 26 20-45 1-26 (26)
3 3kf9_B MLCK2, myosin light cha 28.0 12 0.00041 20.6 -0.1 17 22-39 2-18 (22)
4 2z15_A Protein TOB1; human TOB 17.8 1.1E+02 0.0038 22.4 3.4 10 90-99 48-57 (130)
5 3e9v_A Protein BTG2; B-cell tr 17.1 2.4E+02 0.0082 20.4 5.1 9 91-99 45-53 (120)
6 2z2v_A Hypothetical protein PH 14.7 57 0.0019 26.6 1.2 20 78-97 312-340 (365)
7 3muj_A Transcription factor CO 14.2 38 0.0013 25.7 0.1 14 105-118 116-129 (138)
8 3abi_A Putative uncharacterize 12.2 72 0.0025 25.3 1.1 19 79-97 313-340 (365)
9 1mxe_E CAM kinase I, target se 9.7 1.4E+02 0.0049 15.7 1.5 9 20-28 6-14 (26)
10 1ym0_B Fibrinotic enzyme compo 9.6 1.2E+02 0.0041 17.1 1.1 14 92-105 4-17 (27)
No 1
>4aqr_D Calcium-transporting ATPase 8, plasma membrane-TY; Ca-binding protein-hydrolase complex, plasma-membrane calciu; 1.95A {Arabidopsis thaliana}
Probab=99.75 E-value=4.2e-19 Score=119.39 Aligned_cols=51 Identities=31% Similarity=0.471 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHhhhhcccccccchhhhhhhhHHHHHHHHHHHHhHHHHhhh
Q 040310 16 KSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFRRE 67 (138)
Q Consensus 16 ~S~EaLrRWR~Aa~lVlN~sRRFRytadL~Kr~e~e~kRrki~~~~~f~~a~ 67 (138)
+|+|+|+|||+|+ ||+||+||||||+||+|++++++++++|+...+.++|+
T Consensus 1 ~s~e~L~rWR~a~-lVlNa~RRFR~t~dL~K~~e~~~~~rkiR~~~~v~rAa 51 (57)
T 4aqr_D 1 SSIERLQQWRKAA-LVLNASRRFRYTLDLKKEQETREMRQKIRSHAHALLAA 51 (57)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-HHhchHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999995 99999999999999999999999999996666655553
No 2
>2l1w_B Vacuolar calcium ATPase BCA1 peptide; calmodulin, calmodulin complex, soybean calmodulin, vacuolar ATPase, metal binding protein; NMR {Glycine max}
Probab=98.92 E-value=1.5e-10 Score=66.92 Aligned_cols=26 Identities=54% Similarity=0.860 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhhcccccccchhhhhh
Q 040310 20 ALERWRILSGFVKNRKRRFRFTANLA 45 (138)
Q Consensus 20 aLrRWR~Aa~lVlN~sRRFRytadL~ 45 (138)
+++|||+|+++|+||+|||||++||+
T Consensus 1 al~rWR~a~~~v~n~~rrfr~~~~L~ 26 (26)
T 2l1w_B 1 ARQRWRSSVSIVKNRARRFRMISNLX 26 (26)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHC-
T ss_pred CchhHHHHHHHHhCcccccccccccC
Confidence 47999999999999999999999983
No 3
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=27.96 E-value=12 Score=20.63 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=14.0
Q ss_pred HHHHHHhhhhcccccccc
Q 040310 22 ERWRILSGFVKNRKRRFR 39 (138)
Q Consensus 22 rRWR~Aa~lVlN~sRRFR 39 (138)
++|.+.+ .++|+.-||+
T Consensus 2 ~~WkK~f-~av~Aanrl~ 18 (22)
T 3kf9_B 2 RRWKKNF-IAVSAANRFK 18 (26)
T ss_dssp HHHHHHH-HHHHHHHHHH
T ss_pred chHHHHH-HHHHHHHHHh
Confidence 6899998 8888887775
No 4
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=17.77 E-value=1.1e+02 Score=22.43 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=8.8
Q ss_pred hcccCCCCCC
Q 040310 90 TNQHEPKNPI 99 (138)
Q Consensus 90 ~gvw~Pee~~ 99 (138)
.|-|||++|.
T Consensus 48 ~~HWyP~~P~ 57 (130)
T 2z15_A 48 EGHWYPEKPY 57 (130)
T ss_dssp TTCCCTTCTT
T ss_pred cCCCCCCCCC
Confidence 4999999986
No 5
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=17.13 E-value=2.4e+02 Score=20.36 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=8.2
Q ss_pred cccCCCCCC
Q 040310 91 NQHEPKNPI 99 (138)
Q Consensus 91 gvw~Pee~~ 99 (138)
|-|||++|.
T Consensus 45 ~HW~P~~P~ 53 (120)
T 3e9v_A 45 HHWFPEKPS 53 (120)
T ss_dssp TSCCTTSTT
T ss_pred cCCCCCCCC
Confidence 999999984
No 6
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=14.66 E-value=57 Score=26.59 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHh---------cccCCCC
Q 040310 78 QHSDGLIKAKMLT---------NQHEPKN 97 (138)
Q Consensus 78 s~svG~~tAaf~~---------gvw~Pee 97 (138)
|..+|+.+|+.+. |||.||+
T Consensus 312 s~ttg~p~~i~a~li~~G~~~~Gv~~pE~ 340 (365)
T 2z2v_A 312 SRVTGFTAAIISRIVAENTCTFGVIPPEI 340 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCSEEECGGG
T ss_pred ehhhhhHHHHHHHHHHCCCcccceecHHH
Confidence 5566665555544 8888887
No 7
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=14.18 E-value=38 Score=25.67 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=12.0
Q ss_pred hhhhhhcccccccc
Q 040310 105 SLTKKVNKPKASDK 118 (138)
Q Consensus 105 ~~~r~~l~~~as~g 118 (138)
-|-|+++|+||++=
T Consensus 116 ~lpk~~~lkraa~l 129 (138)
T 3muj_A 116 RLPKEVLLKRAADL 129 (138)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 67899999999873
No 8
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=12.23 E-value=72 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHh---------cccCCCC
Q 040310 79 HSDGLIKAKMLT---------NQHEPKN 97 (138)
Q Consensus 79 ~svG~~tAaf~~---------gvw~Pee 97 (138)
..+|+.+|+.+. ||+.||.
T Consensus 313 ~tTG~~~a~~a~lil~g~i~~GV~~PE~ 340 (365)
T 3abi_A 313 RVTGFTAAIISRIVAENTCTFGVIPPEI 340 (365)
T ss_dssp HHHHHHHHHHHHHHHTTCSCSEEECTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEChhh
Confidence 456776666554 8887764
No 9
>1mxe_E CAM kinase I, target sequence of RAT calmodulin-dependent protein kinase I; calmodulin-pepide complex, XRAY, metal binding protein; 1.70A {Drosophila melanogaster} PDB: 2l7l_B
Probab=9.72 E-value=1.4e+02 Score=15.71 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=7.1
Q ss_pred HHHHHHHHh
Q 040310 20 ALERWRILS 28 (138)
Q Consensus 20 aLrRWR~Aa 28 (138)
+.++|++|.
T Consensus 6 Akrkwk~a~ 14 (26)
T 1mxe_E 6 AKSKWKQAF 14 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567899886
No 10
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=9.64 E-value=1.2e+02 Score=17.13 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=11.1
Q ss_pred ccCCCCCCCcccch
Q 040310 92 QHEPKNPIGQDQLS 105 (138)
Q Consensus 92 vw~Pee~~g~~~~~ 105 (138)
||||-..-|+.+-|
T Consensus 4 vwypggqcgvsqys 17 (27)
T 1ym0_B 4 VWYPGGQCGVSQYS 17 (27)
T ss_dssp CSCTTSCCSCCSST
T ss_pred eeccCCcccceecc
Confidence 89998888877653
Done!