Query 040310
Match_columns 138
No_of_seqs 90 out of 103
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 11:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040310.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040310hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2z15a1 d.370.1.1 (A:10-126) T 23.7 32 0.0023 23.4 3.3 9 91-99 42-50 (117)
2 d3e9va1 d.370.1.1 (A:9-128) NG 17.7 1E+02 0.0074 20.7 4.9 9 91-99 45-53 (120)
3 d2f0ca1 b.21.1.3 (A:63-163) Ba 13.1 20 0.0015 24.3 0.1 42 89-137 42-85 (101)
4 d1zrua1 b.21.1.3 (A:162-264) r 12.0 25 0.0018 24.0 0.2 40 91-137 44-85 (103)
5 d1d4ua2 g.39.1.5 (A:1-36) DNA 11.6 37 0.0027 19.2 0.9 10 1-10 16-25 (36)
6 d1br2a1 b.34.3.1 (A:34-79) Myo 9.5 33 0.0024 19.8 0.2 11 92-102 2-12 (46)
7 d1gx1a_ d.79.5.1 (A:) 2C-methy 9.4 38 0.0028 23.8 0.5 23 75-97 41-65 (157)
8 d1w55a2 d.79.5.1 (A:208-370) I 9.3 41 0.003 23.8 0.6 9 91-99 60-68 (163)
9 d1t0aa_ d.79.5.1 (A:) 2C-methy 9.2 39 0.0029 23.8 0.5 24 74-97 40-65 (158)
10 d2p7tc1 f.14.1.1 (C:86-119) Po 7.9 90 0.0065 17.1 1.6 12 79-90 16-27 (34)
No 1
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.68 E-value=32 Score=23.41 Aligned_cols=9 Identities=22% Similarity=0.542 Sum_probs=8.1
Q ss_pred cccCCCCCC
Q 040310 91 NQHEPKNPI 99 (138)
Q Consensus 91 gvw~Pee~~ 99 (138)
|-|||++|.
T Consensus 42 ~HWyp~~P~ 50 (117)
T d2z15a1 42 GHWYPEKPY 50 (117)
T ss_dssp TCCCTTCTT
T ss_pred CCCCCCCCC
Confidence 999999975
No 2
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.66 E-value=1e+02 Score=20.72 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=8.2
Q ss_pred cccCCCCCC
Q 040310 91 NQHEPKNPI 99 (138)
Q Consensus 91 gvw~Pee~~ 99 (138)
|-|||++|.
T Consensus 45 ~HWyp~~P~ 53 (120)
T d3e9va1 45 HHWFPEKPS 53 (120)
T ss_dssp TSCCTTSTT
T ss_pred CcCCCCCCC
Confidence 999999986
No 3
>d2f0ca1 b.21.1.3 (A:63-163) Baseplate protein (bpp), C-terminal domain {Lactococcus phage tp901-1 [TaxId: 35345]}
Probab=13.14 E-value=20 Score=24.33 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=30.9
Q ss_pred HhcccCCCC--CCCcccchhhhhhcccccccchhhhhccCCCcceeeeccc
Q 040310 89 LTNQHEPKN--PIGQDQLSLTKKVNKPKASDKRKRKVMNQETTHRITWFGT 137 (138)
Q Consensus 89 ~~gvw~Pee--~~g~~~~~~~r~~l~~~as~g~~~~~mn~~~~~~~~~~~~ 137 (138)
..|.|-|.+ |. -.+-|.-+-+-+..-|=+--+|...|||+|.
T Consensus 42 ~~~~~v~~~~rP~-------~~qsLvGH~ag~~~SFHIDi~p~GsitWWG~ 85 (101)
T d2f0ca1 42 LVNRSVPNEFCPR-------NRCSLVGHMVGGWNAFHIDIPSSGVCQWFGP 85 (101)
T ss_dssp CCSCCCCGGGCCS-------SCEEEEEEETTSSCEEEEEECTTCCCEECSC
T ss_pred cccccccCCcccc-------ceeEEEEEEcCCCceeEEEeCCCceEEEecC
Confidence 336687777 33 3445666666666778899999999999996
No 4
>d1zrua1 b.21.1.3 (A:162-264) receptor binding protein, rbp, C-terminal domain {Lactococcus lactis phage p2 [TaxId: 100641]}
Probab=12.01 E-value=25 Score=23.98 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=30.2
Q ss_pred cccCCCC--CCCcccchhhhhhcccccccchhhhhccCCCcceeeeccc
Q 040310 91 NQHEPKN--PIGQDQLSLTKKVNKPKASDKRKRKVMNQETTHRITWFGT 137 (138)
Q Consensus 91 gvw~Pee--~~g~~~~~~~r~~l~~~as~g~~~~~mn~~~~~~~~~~~~ 137 (138)
|-|-|.+ |. -.+-|.-+-+-+..-|=+.-+|...|||+|+
T Consensus 44 ~~wV~~pfrP~-------~~qsLvGH~ag~~~SFHIDi~p~GsitWWG~ 85 (103)
T d1zrua1 44 GTWVDRPFRPA-------AVQSLVGHFAGRDTSFHIDINPNGSITWWGA 85 (103)
T ss_dssp SCCCCGGGCCS-------SCEEEEEEETTSSCEEEEEECTTSCEEECSC
T ss_pred cceecCCCCcc-------ceEEEEEEEcCCCceEEEEeCCCceEEEecC
Confidence 5677665 33 3455677767777778899999999999996
No 5
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.58 E-value=37 Score=19.15 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=8.6
Q ss_pred CccccccccC
Q 040310 1 MEYYLNENFG 10 (138)
Q Consensus 1 me~~l~e~F~ 10 (138)
|+|||..+|+
T Consensus 16 ~DSYL~~~Fd 25 (36)
T d1d4ua2 16 MDSYLMDHFD 25 (36)
T ss_dssp SCSSSTTTTS
T ss_pred HHHHHHHcCC
Confidence 6789999998
No 6
>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=9.49 E-value=33 Score=19.82 Aligned_cols=11 Identities=18% Similarity=0.254 Sum_probs=9.1
Q ss_pred ccCCCCCCCcc
Q 040310 92 QHEPKNPIGQD 102 (138)
Q Consensus 92 vw~Pee~~g~~ 102 (138)
||.|.+.+|.-
T Consensus 2 VWVPd~kegfv 12 (46)
T d1br2a1 2 VWVPSEKHGFE 12 (46)
T ss_dssp EEEECSSSSEE
T ss_pred EEeeCCcccEE
Confidence 79999988754
No 7
>d1gx1a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Escherichia coli [TaxId: 562]}
Probab=9.43 E-value=38 Score=23.85 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=12.5
Q ss_pred hhhhhhhHHHHHHHHh--cccCCCC
Q 040310 75 LNNQHSDGLIKAKMLT--NQHEPKN 97 (138)
Q Consensus 75 ~~~s~svG~~tAaf~~--gvw~Pee 97 (138)
+.|+.++-+.-|+=.- |.|||..
T Consensus 41 ~~HAi~DAilGa~~lgDIG~~Fp~~ 65 (157)
T d1gx1a_ 41 ALHALTDALLGAAALGDIGKLFPDT 65 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHSCTT
T ss_pred HHHHHHHHHHHhhcCCCchhccccc
Confidence 3444444443333222 9999986
No 8
>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=9.26 E-value=41 Score=23.83 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=7.4
Q ss_pred cccCCCCCC
Q 040310 91 NQHEPKNPI 99 (138)
Q Consensus 91 gvw~Pee~~ 99 (138)
|.|||...+
T Consensus 60 G~~Fp~~d~ 68 (163)
T d1w55a2 60 GELYPDTDM 68 (163)
T ss_dssp HHHSCCTTS
T ss_pred hhhhccccc
Confidence 999999843
No 9
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Probab=9.18 E-value=39 Score=23.79 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=13.2
Q ss_pred chhhhhhhHHHHHHHHh--cccCCCC
Q 040310 74 ILNNQHSDGLIKAKMLT--NQHEPKN 97 (138)
Q Consensus 74 ~~~~s~svG~~tAaf~~--gvw~Pee 97 (138)
.+.|+.++-+.-|+=.- |.|||.+
T Consensus 40 v~~HAi~DAilGA~~~gDIG~~Fp~~ 65 (158)
T d1t0aa_ 40 VVLHAISDAILGAMALGDIGKHFPDT 65 (158)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHSCTT
T ss_pred HHHHHHHHHHhhhhhcCcchhhcccc
Confidence 34444444443333222 9999987
No 10
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=7.90 E-value=90 Score=17.06 Aligned_cols=12 Identities=42% Similarity=0.481 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHh
Q 040310 79 HSDGLIKAKMLT 90 (138)
Q Consensus 79 ~svG~~tAaf~~ 90 (138)
.|-|+.+||.++
T Consensus 16 ts~glv~aa~at 27 (34)
T d2p7tc1 16 TSFGLVTAALAT 27 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhhHHHHHHH
Confidence 578999999876
Done!