BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040313
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFH0|ATP5L_PONAB ATP synthase subunit g, mitochondrial OS=Pongo abelii GN=ATP5L PE=3
SV=1
Length = 103
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 26 YIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNREL 85
+++ L+E + + T + LA +Y ++ +P + + GLK+ + + +
Sbjct: 4 FVRNLVEKTPALV-NAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQGLKKIVNSAQT 62
Query: 86 ----EMNLDNAGLAALFGVECFAWFCGGEIIG-RGFTITGYHV 123
++ + A L L E WF GEIIG RG I GY V
Sbjct: 63 GSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGKRG--IIGYDV 103
>sp|O75964|ATP5L_HUMAN ATP synthase subunit g, mitochondrial OS=Homo sapiens GN=ATP5L PE=1
SV=3
Length = 103
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 26 YIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFMKNREL 85
+++ L+E + + T + LA +Y ++ +P + + LK+ + + +
Sbjct: 4 FVRNLVEKTPALV-NAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSAQT 62
Query: 86 ----EMNLDNAGLAALFGVECFAWFCGGEIIG-RGFTITGYHV 123
++ + A L L E WF GEIIG RG I GY V
Sbjct: 63 GSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGKRG--IIGYDV 103
>sp|Q7S634|NNT1_NEUCR Putative nicotinamide N-methyltransferase OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=nnt-1 PE=3 SV=1
Length = 282
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 22 NGSAYIKQLLEDNKQHIKDP-----------PNTETCQLLAKQLFYTRLASIPNRVDAFW 70
NG+ I Q E++ + +KD P+ L AK++ T P+ VD W
Sbjct: 68 NGAVIISQYFEEHPEEVKDRTVLEIGAAAGLPSLVAAVLGAKKVVVTDFPD-PDIVDVMW 126
Query: 71 KELDGLKQFMKNRELEMNL 89
K + G +RE + N+
Sbjct: 127 KNIRGCPMLAVDREEDRNI 145
>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2
Length = 2742
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 5 LPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDP---PNTETCQLLAKQLFYTRLAS 61
P Q + S + +++GS + D+ + +P P E C LL LF
Sbjct: 1394 FPTAQGRHSSSLSNVLEDGSLLEPNISGDDTSNTSNPQQTPEEELCNLLTNVLFSVTWRG 1453
Query: 62 IPNRVDAFWKE 72
+ +A W+E
Sbjct: 1454 VEGSAEAAWRE 1464
>sp|Q9E7N9|MATRX_LNYV3 Matrix protein OS=Lettuce necrotic yellows virus (isolate 318)
GN=M PE=2 SV=1
Length = 177
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 39 KDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQ--FMKNRELEMNLDNAGLAA 96
+ P + ETC L+A +LF + L+ + V +F + L ++ ++ N L + D G A
Sbjct: 23 RGPKDGETCPLIASELFSSGLSEVFKSVTSFSEILRNMESRGYITNITLRADSDILGPGA 82
Query: 97 L 97
L
Sbjct: 83 L 83
>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
Length = 18141
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 2 ASKLPQLQSKASQASEFFIKNGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLAS 61
+S++PQ +KA + +K + KQ L+D +++ PN E + + +L
Sbjct: 12271 SSEIPQGDAKAKTIGKKKVKRMN---KQELDDFVTELQEEPNQEVYETRMSDFYEVKLTE 12327
Query: 62 IPNRVDA 68
+P+ +D+
Sbjct: 12328 LPSEMDS 12334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,412,384
Number of Sequences: 539616
Number of extensions: 1674464
Number of successful extensions: 3979
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3978
Number of HSP's gapped (non-prelim): 6
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)