Query 040313
Match_columns 123
No_of_seqs 124 out of 197
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 33.7 54 0.0019 21.8 4.0 33 76-112 22-54 (89)
2 2bze_A KIAA0252 protein; human 28.0 90 0.0031 22.3 4.7 40 39-80 113-152 (153)
3 1vig_A Vigilin; RNA-binding pr 27.3 17 0.00057 22.5 0.5 11 107-117 15-25 (71)
4 2p2r_A Poly(RC)-binding protei 24.4 15 0.00051 22.8 -0.1 11 107-117 15-25 (76)
5 2jmf_B Neurogenic locus notch 22.6 41 0.0014 17.8 1.4 13 60-72 10-22 (26)
6 1dtj_A RNA-binding neurooncolo 22.0 18 0.00063 22.2 -0.1 11 107-117 13-23 (76)
7 1wvn_A Poly(RC)-binding protei 21.7 18 0.00061 22.8 -0.2 11 107-117 16-26 (82)
8 1ec6_A RNA-binding protein NOV 21.2 19 0.00065 22.9 -0.1 11 107-117 13-23 (87)
9 2axy_A Poly(RC)-binding protei 21.0 19 0.00066 22.3 -0.1 11 107-117 15-25 (73)
10 2ctl_A Vigilin; K homology typ 20.0 25 0.00087 23.1 0.3 11 107-117 27-37 (97)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=33.73 E-value=54 Score=21.79 Aligned_cols=33 Identities=9% Similarity=0.287 Sum_probs=21.4
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhc
Q 040313 76 LKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEII 112 (123)
Q Consensus 76 ~k~~~~~~~~~ltv~ea~~~~l~~~Ev~~wF~vGEiI 112 (123)
+|++++... +-++.+ +.+.++-.++.-||||+|
T Consensus 22 vKrl~~~~~-~~~v~~---~v~i~v~glaKvfVgelV 54 (89)
T 1bh9_B 22 IKRLIQSIT-GTSVSQ---NVVIAMSGISKVFVGEVV 54 (89)
T ss_dssp HHHHHHHHH-SSCCCH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCc---cHHHHHHHHHHHHHHHHH
Confidence 444444332 445544 556678889999999997
No 2
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=28.04 E-value=90 Score=22.33 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=30.9
Q ss_pred cCCCchhHHHHHHHHHHHHHhhcCCCChHHHHHHHHhHHHHH
Q 040313 39 KDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFM 80 (123)
Q Consensus 39 ~~~~~~~k~~~L~k~~~Y~k~~l~PP~~~~~~~~~~~~k~~~ 80 (123)
+.+.|-+.|.++-..+ .+....+||..++.+-.+.+++.+
T Consensus 113 N~~fte~Ef~~w~~~~--~~~~~~~PT~~~v~~K~~~i~~a~ 152 (153)
T 2bze_A 113 NQEFTESEFMKWKEAM--FSAGMQLPTLDEINKKELSIKEAL 152 (153)
T ss_dssp CSCCCHHHHHHHHHHH--HHHTCCCCBHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHH--HHcCCCCCCHHHHHHHHHHHHHHh
Confidence 7778777777666655 667889999999999888887543
No 3
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=27.34 E-value=17 Score=22.53 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=8.8
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
++|.+||++++
T Consensus 15 ~ig~iIG~gG~ 25 (71)
T 1vig_A 15 FHRHLIGKSGA 25 (71)
T ss_dssp HHHHHTCSSCC
T ss_pred HhhhhcCCCCc
Confidence 47899999854
No 4
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=24.45 E-value=15 Score=22.79 Aligned_cols=11 Identities=45% Similarity=0.344 Sum_probs=8.7
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
.+|.+|||++.
T Consensus 15 ~vg~iIGkgG~ 25 (76)
T 2p2r_A 15 LIGCIIGRQGA 25 (76)
T ss_dssp HHHHHHCGGGH
T ss_pred HcceEECCCCh
Confidence 57999999854
No 5
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=22.62 E-value=41 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=9.3
Q ss_pred hcCCCChHHHHHH
Q 040313 60 ASIPNRVDAFWKE 72 (123)
Q Consensus 60 ~l~PP~~~~~~~~ 72 (123)
+.+||+++|.-+.
T Consensus 10 akqppsyedcik~ 22 (26)
T 2jmf_B 10 AKQPPSYEDCIKX 22 (26)
T ss_pred CCCCCCHHHHHHh
Confidence 4578998887554
No 6
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=22.00 E-value=18 Score=22.19 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=8.7
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
.+|-||||++.
T Consensus 13 ~vg~IIGkgG~ 23 (76)
T 1dtj_A 13 LVGAILGKGGK 23 (76)
T ss_dssp THHHHHCSTTH
T ss_pred HcceEECCCch
Confidence 47899999854
No 7
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=21.70 E-value=18 Score=22.82 Aligned_cols=11 Identities=45% Similarity=0.344 Sum_probs=8.7
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
.+|.||||++.
T Consensus 16 ~vg~IIGkgG~ 26 (82)
T 1wvn_A 16 LIGCIIGRQGA 26 (82)
T ss_dssp GHHHHHCGGGH
T ss_pred hccceeCCCch
Confidence 57999999854
No 8
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=21.20 E-value=19 Score=22.93 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=8.7
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
.+|.||||++.
T Consensus 13 ~vG~IIGkgG~ 23 (87)
T 1ec6_A 13 LVGAILGKGGK 23 (87)
T ss_dssp HHHHHHCGGGH
T ss_pred HcCeeECCCcH
Confidence 47999999854
No 9
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=21.03 E-value=19 Score=22.31 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=8.5
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
.+|.+|||++.
T Consensus 15 ~ig~iIGkgG~ 25 (73)
T 2axy_A 15 EVGSIIGKKGE 25 (73)
T ss_dssp HHHHHHCGGGH
T ss_pred HeeeEECCCCH
Confidence 47899999854
No 10
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=19.99 E-value=25 Score=23.14 Aligned_cols=11 Identities=36% Similarity=0.344 Sum_probs=8.6
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
++|.||||++.
T Consensus 27 ~ig~IIGkgG~ 37 (97)
T 2ctl_A 27 YHPKIIGRKGA 37 (97)
T ss_dssp THHHHSCSSSC
T ss_pred HhhhcCCCCch
Confidence 47899999854
Done!