Query 040313
Match_columns 123
No_of_seqs 124 out of 197
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 11:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ezia_ a.4.1.2 (A:) Transposa 46.1 21 0.0015 21.1 4.9 38 37-76 21-59 (75)
2 d2bzea1 b.34.21.1 (A:345-476) 37.7 25 0.0018 22.9 4.7 40 39-80 92-131 (132)
3 d2dt6a1 a.217.1.1 (A:48-110) S 24.8 36 0.0027 19.5 3.3 26 9-34 3-28 (63)
4 d1v2aa1 a.45.1.1 (A:84-208) Cl 24.5 43 0.0031 20.3 3.9 52 22-76 47-98 (125)
5 d1ug0a_ a.217.1.1 (A:) Splicin 23.9 44 0.0032 20.3 3.8 28 8-35 27-54 (88)
6 d2cpqa1 d.51.1.1 (A:212-289) F 23.8 8.3 0.00061 23.3 0.1 11 107-117 18-28 (78)
7 d1e3ha4 d.52.3.1 (A:579-632) P 23.2 8.1 0.00059 22.2 0.0 11 107-117 13-23 (54)
8 d1bh9b_ a.22.1.3 (B:) TAF(II)2 22.3 54 0.0039 20.4 4.0 35 75-113 21-55 (89)
9 d1x4oa1 a.217.1.1 (A:8-72) Spl 22.0 31 0.0022 19.8 2.6 28 8-35 10-37 (65)
10 d1no1a_ a.179.1.1 (A:) Repliso 20.7 19 0.0014 21.2 1.4 19 51-69 47-65 (67)
No 1
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Probab=46.10 E-value=21 Score=21.13 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=29.7
Q ss_pred hccCCCchhHH-HHHHHHHHHHHhhcCCCChHHHHHHHHhH
Q 040313 37 HIKDPPNTETC-QLLAKQLFYTRLASIPNRVDAFWKELDGL 76 (123)
Q Consensus 37 lv~~~~~~~k~-~~L~k~~~Y~k~~l~PP~~~~~~~~~~~~ 76 (123)
|...-|+.++| .++...- .+.++.||++..|...++.+
T Consensus 21 L~~~~ps~~~~y~~i~~~c--~~~gl~~PS~~T~~rri~~l 59 (75)
T d2ezia_ 21 LRPEKPAFRKCYERLELAA--REHGWSIPSRATAFRRIQQL 59 (75)
T ss_dssp TSTTCCCHHHHHHHHHHHH--HHHTCCCCCHHHHHHHHHHH
T ss_pred hCccCCCHHHHHHHHHHHH--HHcCCCCCCHHHHHHHHHhC
Confidence 44777888998 7777755 68899999999998877543
No 2
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.68 E-value=25 Score=22.85 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=32.0
Q ss_pred cCCCchhHHHHHHHHHHHHHhhcCCCChHHHHHHHHhHHHHH
Q 040313 39 KDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGLKQFM 80 (123)
Q Consensus 39 ~~~~~~~k~~~L~k~~~Y~k~~l~PP~~~~~~~~~~~~k~~~ 80 (123)
+.++|-+.+.++.... .+....+||..++.+-.+.+++.+
T Consensus 92 n~~fte~E~~~w~~~~--~~~~~~~Pt~~~l~~K~~~i~~a~ 131 (132)
T d2bzea1 92 NQEFTESEFMKWKEAM--FSAGMQLPTLDEINKKELSIKEAL 131 (132)
T ss_dssp CSCCCHHHHHHHHHHH--HHHTCCCCBHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHH--HHcCCCCCCHHHHHHHHHHHHHHh
Confidence 7788888887777766 577899999999998888877543
No 3
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.79 E-value=36 Score=19.49 Aligned_cols=26 Identities=12% Similarity=0.424 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHhhhhHHHHHHHHHhc
Q 040313 9 QSKASQASEFFIKNGSAYIKQLLEDN 34 (123)
Q Consensus 9 ~~~~~~a~~~~~k~~~~~~~~l~~k~ 34 (123)
..-+...|++++++|..+-..++++.
T Consensus 3 ~~iI~~tA~fVak~G~~fE~~l~~~e 28 (63)
T d2dt6a1 3 RNIVDKTASFVARNGPEFEARIRQNE 28 (63)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHhc
Confidence 34455677899999999999998763
No 4
>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}
Probab=24.53 E-value=43 Score=20.30 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcchhccCCCchhHHHHHHHHHHHHHhhcCCCChHHHHHHHHhH
Q 040313 22 NGSAYIKQLLEDNKQHIKDPPNTETCQLLAKQLFYTRLASIPNRVDAFWKELDGL 76 (123)
Q Consensus 22 ~~~~~~~~l~~k~~~lv~~~~~~~k~~~L~k~~~Y~k~~l~PP~~~~~~~~~~~~ 76 (123)
....++++.+++.+=++.+.+|.+.+.-... + ...+..+...+++|.+..-.
T Consensus 47 ~~l~~le~~L~~~~yl~Gd~~T~ADi~l~~~-~--~~~~~~~~~~~~~P~l~~w~ 98 (125)
T d1v2aa1 47 GALDLLEQFVTERAYAAADHLTVADICLLGT-V--TALNWLKHDLEPFPHIRAWL 98 (125)
T ss_dssp HHHHHHHHHHHHSSSSSSSSCCHHHHHHHHH-H--HGGGTTTCCCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCccCCCCCcHHHHHHHHH-H--HHHHHcCCCcccCHHHHHHH
Confidence 3467888889887767778899998643222 3 34455665566677644333
No 5
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.95 E-value=44 Score=20.33 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHhhhhHHHHHHHHHhcc
Q 040313 8 LQSKASQASEFFIKNGSAYIKQLLEDNK 35 (123)
Q Consensus 8 ~~~~~~~a~~~~~k~~~~~~~~l~~k~~ 35 (123)
+..-+...|++++|+|..+-..++++..
T Consensus 27 ~~~iI~~tA~~Vak~G~~fE~~l~~k~~ 54 (88)
T d1ug0a_ 27 TRRVIEKLARFVAEGGPELEKVAMEDYK 54 (88)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHhcc
Confidence 4555667788999999999999998753
No 6
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.81 E-value=8.3 Score=23.27 Aligned_cols=11 Identities=27% Similarity=0.102 Sum_probs=8.6
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
.+|.+|||++.
T Consensus 18 ~ig~vIG~gG~ 28 (78)
T d2cpqa1 18 LMGLAIGTHGS 28 (78)
T ss_dssp HHHHHHTTTTH
T ss_pred HHHHHcCCChH
Confidence 47899999853
No 7
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=23.21 E-value=8.1 Score=22.15 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=0.0
Q ss_pred HhhhhcccCCc
Q 040313 107 CGGEIIGRGFT 117 (123)
Q Consensus 107 ~vGEiIGRr~~ 117 (123)
.+|++||++++
T Consensus 13 kig~vIG~GG~ 23 (54)
T d1e3ha4 13 KIGEVIGPKRQ 23 (54)
T ss_dssp -----------
T ss_pred HeeEEECCccH
Confidence 47899999844
No 8
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.30 E-value=54 Score=20.39 Aligned_cols=35 Identities=9% Similarity=0.268 Sum_probs=21.8
Q ss_pred hHHHHHHhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcc
Q 040313 75 GLKQFMKNRELEMNLDNAGLAALFGVECFAWFCGGEIIG 113 (123)
Q Consensus 75 ~~k~~~~~~~~~ltv~ea~~~~l~~~Ev~~wF~vGEiIG 113 (123)
.++++++.-. +-++.+ +.++++--++=.||||||=
T Consensus 21 ~vkrl~~~~~-g~sv~~---~v~i~v~giaKvFvGEiVE 55 (89)
T d1bh9b_ 21 AIKRLIQSIT-GTSVSQ---NVVIAMSGISKVFVGEVVE 55 (89)
T ss_dssp HHHHHHHHHH-SSCCCH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCh---hHHHHHHHHHHHHHHHHHH
Confidence 3444555332 445544 5666777788889999983
No 9
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.97 E-value=31 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHhhhhHHHHHHHHHhcc
Q 040313 8 LQSKASQASEFFIKNGSAYIKQLLEDNK 35 (123)
Q Consensus 8 ~~~~~~~a~~~~~k~~~~~~~~l~~k~~ 35 (123)
+..-+...|++++++|..+-..++++..
T Consensus 10 ~~~iI~~tA~~Vak~G~~fE~~l~~k~~ 37 (65)
T d1x4oa1 10 AKNLAEKLARFIADGGPEVETIALQNNR 37 (65)
T ss_dssp HHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 4455566778999999998888887654
No 10
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=20.70 E-value=19 Score=21.24 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=15.3
Q ss_pred HHHHHHHHhhcCCCChHHH
Q 040313 51 AKQLFYTRLASIPNRVDAF 69 (123)
Q Consensus 51 ~k~~~Y~k~~l~PP~~~~~ 69 (123)
..-.-|+|+...||+.+++
T Consensus 47 nnltdyakvnkfpptvsdl 65 (67)
T d1no1a_ 47 NNLTDYAKVNKFPPTVSDL 65 (67)
T ss_dssp HHHHHHHHHCSSCCCGGGG
T ss_pred HHhHHHHHHccCCCcHHHH
Confidence 3445699999999999875
Done!