BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040316
(957 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
Length = 618
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 180/393 (45%), Gaps = 49/393 (12%)
Query: 15 LDDLIKGIR--QQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSF 72
L +LI+ IR + Q +E I K IR + D + + KL Y+ L G F
Sbjct: 12 LRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHF 70
Query: 73 AAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALEC 132
+++++S +F K+IGY ++ V LL+TN ++ DLN S QF LAL
Sbjct: 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCT 130
Query: 133 LSRIGNVDLARDLTPEVFTLLSSN-----------AVRVCFKRLVENLESSEPV------ 175
L +G+ ++ RDL EV LL ++ AV V +++ E +E P
Sbjct: 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV-IRKVPELMEMFLPATKNLLN 189
Query: 176 -----ILSAVVGVFCELCLKDP---RSYLPLAPEFYKILVD--------------SKNNW 213
+L V + E+C + P + L P+ +IL + + +
Sbjct: 190 EKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249
Query: 214 LLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTE-----AKSLLFECIRTVLSSLSEYE 268
L +++L++ L + ++ + + + + TE ++L+E + T++ SE
Sbjct: 250 LQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESG 309
Query: 269 SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKL 328
V LA+ + FL+++D N++Y+ L +L AV ++ ++ L D D +IK
Sbjct: 310 LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKR 368
Query: 329 ESLRLLMSMVSESNVAEISRVLINYALKSDPEF 361
++ L ++V+ +N+ + + L+ + +PEF
Sbjct: 369 RAMELSFALVNGNNIRGMMKELLYFLDSCEPEF 401
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 120/510 (23%), Positives = 224/510 (43%), Gaps = 78/510 (15%)
Query: 13 RDLDDLIKGIRQQQIKESLF--ISKAIEEIRREIK---STDLPTKSAALRKLSYLSSLHG 67
R L I IR + KE+ I+K + IR + K + D +K + KL ++ L G
Sbjct: 11 RGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL-G 69
Query: 68 ADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVS 127
D+ F AV ++SS ++ K+IGY ++ N ++ +I LI N ++ DL S N +
Sbjct: 70 HDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMG 129
Query: 128 LALECLSRIGNVDLARDLTPEVFTLLSSN--------AVRVCFKRLVENLESSEPV---- 175
LAL C++ +G+ ++A E+ +L + + +C RL P+
Sbjct: 130 LALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189
Query: 176 -------------ILSAVVGVFCELCLKDPRSY---LPLAPEFYKILVDSKNN------- 212
+++A + L K+P + + LA +V S +
Sbjct: 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTY 249
Query: 213 ------WLLIKVLKIF------------AKLA-TLEPRLAKRVVEPICEFMRRTEAK-SL 252
WL +K+L++ +L LE L K P + ++ + AK ++
Sbjct: 250 YFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAV 309
Query: 253 LFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW--AVLE 310
LFE I ++ SE V+ A ++ +FL + NL+YL L+++ +A AV
Sbjct: 310 LFEAISLIIHHDSEPNLLVR-ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT 368
Query: 311 NKDFVIKSL-SDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQIL--G 367
+ + VI +L ++ D +++ ++ LL +M SN +I +++Y +D +I+
Sbjct: 369 HIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKV 428
Query: 368 SILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHV 427
+IL+ + VD+ WY + ++RI EE+ +++I I + DV+
Sbjct: 429 AILAE------KYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKT 482
Query: 428 CRNLLIDPALLGNPFLHRILSAAAWVSGEY 457
L PA N ++ ++ GE+
Sbjct: 483 VFEALQAPACHEN-----LVKVGGYILGEF 507
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 120/510 (23%), Positives = 224/510 (43%), Gaps = 78/510 (15%)
Query: 13 RDLDDLIKGIRQQQIKESLF--ISKAIEEIRREIK---STDLPTKSAALRKLSYLSSLHG 67
R L I IR + KE+ I+K + IR + K + D +K + KL ++ L G
Sbjct: 11 RGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL-G 69
Query: 68 ADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVS 127
D+ F AV ++SS ++ K+IGY ++ N ++ +I LI N ++ DL S N +
Sbjct: 70 HDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMG 129
Query: 128 LALECLSRIGNVDLARDLTPEVFTLLSSN--------AVRVCFKRLVENLESSEPV---- 175
LAL C++ +G+ ++A E+ +L + + +C RL P+
Sbjct: 130 LALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189
Query: 176 -------------ILSAVVGVFCELCLKDPRSY---LPLAPEFYKILVDSKNN------- 212
+++A + L K+P + + LA +V S +
Sbjct: 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTY 249
Query: 213 ------WLLIKVLKIF------------AKLA-TLEPRLAKRVVEPICEFMRRTEAK-SL 252
WL +K+L++ +L LE L K P + ++ + AK ++
Sbjct: 250 YFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAV 309
Query: 253 LFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW--AVLE 310
LFE I ++ SE V+ A ++ +FL + NL+YL L+++ +A AV
Sbjct: 310 LFEAISLIIHHDSEPNLLVR-ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT 368
Query: 311 NKDFVIKSL-SDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQIL--G 367
+ + VI +L ++ D +++ ++ LL +M SN +I +++Y +D +I+
Sbjct: 369 HIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKV 428
Query: 368 SILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHV 427
+IL+ + VD+ WY + ++RI EE+ +++I I + DV+
Sbjct: 429 AILAE------KYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKT 482
Query: 428 CRNLLIDPALLGNPFLHRILSAAAWVSGEY 457
L PA N ++ ++ GE+
Sbjct: 483 VFEALQAPACHEN-----LVKVGGYILGEF 507
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 138/313 (44%), Gaps = 24/313 (7%)
Query: 172 SEPVILSAVVGVFCELCLKDPRS-YLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEP 230
S P++++ V E+ P S L L P+ L+ + N + I L+ P
Sbjct: 172 SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP 231
Query: 231 RLAKRVVEPICEFM--RRTEAKS-LLFECIRTVLSSL------SEYESAVKLAVVKVREF 281
+ R + ICE + R + A S ++ ++ ++ L S+Y + + +
Sbjct: 232 K-DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT 290
Query: 282 LVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES 341
L+ +P ++Y+ L+ +++I K + + +D Y +KLE L +++ + S++
Sbjct: 291 LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIY-VKLEKLDIMIRLASQA 349
Query: 342 NVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQ 401
N+A++ L YA + D +F + + +I R +V + S L ++++
Sbjct: 350 NIAQVLAELKEYATEVDVDFVRKAVRAI----GRCAIKVEQSAERCVSTLLDLIQTKVNY 405
Query: 402 KGEEIEHQIIDIAMRVKDVRPALV-HVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEF 460
+E I DI + + +++ +C NL L P +A W+ GEY E
Sbjct: 406 VVQEAIVVIRDIFRKYPNKYESIIATLCENL----DSLDEPDAR---AAMIWIVGEYAER 458
Query: 461 SRNPFELMEALLQ 473
N EL+E+ L+
Sbjct: 459 IDNADELLESFLE 471
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 138/313 (44%), Gaps = 24/313 (7%)
Query: 172 SEPVILSAVVGVFCELCLKDPRS-YLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEP 230
S P++++ V E+ P S L L P+ L+ + N + I L+ P
Sbjct: 172 SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP 231
Query: 231 RLAKRVVEPICEFM--RRTEAKS-LLFECIRTVLSSL------SEYESAVKLAVVKVREF 281
+ R + ICE + R + A S ++ ++ ++ L S+Y + + +
Sbjct: 232 K-DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT 290
Query: 282 LVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES 341
L+ +P ++Y+ L+ +++I K + + +D Y +KLE L +++ + S++
Sbjct: 291 LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIY-VKLEKLDIMIRLASQA 349
Query: 342 NVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQ 401
N+A++ L YA + D +F + + +I R +V + S L ++++
Sbjct: 350 NIAQVLAELKEYATEVDVDFVRKAVRAI----GRCAIKVEQSAERCVSTLLDLIQTKVNY 405
Query: 402 KGEEIEHQIIDIAMRVKDVRPALV-HVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEF 460
+E I DI + + +++ +C NL L P +A W+ GEY E
Sbjct: 406 VVQEAIVVIRDIFRKYPNKYESIIATLCENL----DSLDEPDAR---AAMIWIVGEYAER 458
Query: 461 SRNPFELMEALLQ 473
N EL+E+ L+
Sbjct: 459 IDNADELLESFLE 471
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 15/193 (7%)
Query: 282 LVDDDPNLKYLGLQALSIIAPKHLWAVL-ENKDFVIKSLSDGDYNIKLESLRLLMSMVSE 340
L+ +P +Y+ L+ +++I K + E K F +K +D Y +KLE L +++ + S+
Sbjct: 291 LLSAEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVK-YNDPIY-VKLEKLDIMIRLASQ 348
Query: 341 SNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHC 400
+N+A++ L YA + D +F + + +I R +V + S L ++++
Sbjct: 349 ANIAQVLAELKEYATEVDVDFVRKAVRAI----GRCAIKVEQSAERCVSTLLDLIQTKVN 404
Query: 401 QKGEEIEHQIIDIAMRVKDVRPALV-HVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVE 459
+E I DI + + +++ +C NL D P +A W+ GEY E
Sbjct: 405 YVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSD----DEP---EARAAMIWIVGEYAE 457
Query: 460 FSRNPFELMEALL 472
S N EL+E+ L
Sbjct: 458 RSDNADELLESFL 470
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016
Length = 257
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 244 MRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK 303
++ TE + +LF L ++S Y + +L ++ +R V++D L +I P
Sbjct: 148 LKATEPQMVLFNLYDDWLKTISSYTAFSRLILI-LRALHVNNDRAKVILKPDKTTITEPH 206
Query: 304 HLWAVLENKDFV-----IKSLSDGDYNIK 327
H+W L +++++ +K L DY K
Sbjct: 207 HIWPTLTDEEWIKVEVQLKDLILADYGKK 235
>pdb|3RMS|A Chain A, Crystal Structure Of Uncharacterized Protein Svir_20580
From Saccharomonospora Viridis
pdb|3RMS|B Chain B, Crystal Structure Of Uncharacterized Protein Svir_20580
From Saccharomonospora Viridis
pdb|3RMS|C Chain C, Crystal Structure Of Uncharacterized Protein Svir_20580
From Saccharomonospora Viridis
Length = 116
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 303 KHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPE-- 360
++LW + K V + ++++ R ++ E+ + R + L D E
Sbjct: 6 RYLWQQADGKRHVYDTARH-----RVQAGRPFTALCGETVTPQTERGDLTAGLWFDGECP 60
Query: 361 FCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIE 407
C L L R + ++ FDW +L+ + + HC GE +E
Sbjct: 61 VCTIALAKALGWPVREISDLAHRFDWSPALITRLAEVLHCSFGEVVE 107
>pdb|3RMQ|A Chain A, Crystal Structure Of Uncharacterized Protein Svir_20580
From Saccharomonospora Viridis (V71m Mutant)
Length = 116
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 303 KHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPE-- 360
++LW + K V + ++++ R ++ E+ + R + L D E
Sbjct: 6 RYLWQQADGKRHVYDTARH-----RVQAGRPFTALCGETVTPQTERGDLTAGLWFDGECP 60
Query: 361 FCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIE 407
C L L R + ++ FDW +L+ + + HC GE +E
Sbjct: 61 VCTIALAKALGWPXREISDLAHRFDWSPALITRLAEVLHCSFGEVVE 107
>pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv
pdb|3ENB|B Chain B, Crystal Structure Of Prp8 Core Domain Iv
Length = 222
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 244 MRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK 303
++ TE + +LF L ++S Y + +L ++ +R V++D L +I P
Sbjct: 139 LKATEPQMVLFNLYDDWLKTISSYTAFSRLILI-LRALHVNNDRAKVILKPDKTTITEPH 197
Query: 304 HLWAVLENKDFV 315
H+W L +++++
Sbjct: 198 HIWPTLTDEEWI 209
>pdb|3LRU|A Chain A, Hprp8 Non-Native Subdomain
pdb|3LRU|B Chain B, Hprp8 Non-Native Subdomain
Length = 160
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 243 FMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAP 302
++ TE + +LF L ++S Y + +L ++ +R V++D L +I P
Sbjct: 76 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILI-LRALHVNNDRAKVILKPDKTTITEP 134
Query: 303 KHLWAVLENKDFV 315
H+W L +++++
Sbjct: 135 HHIWPTLTDEEWI 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,655,528
Number of Sequences: 62578
Number of extensions: 930466
Number of successful extensions: 2591
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2566
Number of HSP's gapped (non-prelim): 24
length of query: 957
length of database: 14,973,337
effective HSP length: 108
effective length of query: 849
effective length of database: 8,214,913
effective search space: 6974461137
effective search space used: 6974461137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)