Query 040316
Match_columns 957
No_of_seqs 300 out of 1297
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1059 Vesicle coat complex A 100.0 3E-144 5E-149 1230.7 58.1 739 5-838 6-789 (877)
2 KOG1062 Vesicle coat complex A 100.0 7.6E-85 1.6E-89 753.5 40.9 514 13-536 8-600 (866)
3 KOG1077 Vesicle coat complex A 100.0 8.3E-78 1.8E-82 683.1 46.6 483 1-497 1-551 (938)
4 PTZ00429 beta-adaptin; Provisi 100.0 9.2E-68 2E-72 636.5 53.3 465 18-498 12-509 (746)
5 PF01602 Adaptin_N: Adaptin N 100.0 6.5E-68 1.4E-72 621.2 43.1 452 29-497 1-484 (526)
6 KOG1060 Vesicle coat complex A 100.0 1.2E-53 2.5E-58 491.7 38.6 440 37-497 37-534 (968)
7 KOG1061 Vesicle coat complex A 100.0 3.5E-53 7.7E-58 493.0 35.4 452 34-500 12-493 (734)
8 COG5096 Vesicle coat complex, 100.0 3.4E-37 7.4E-42 365.7 36.0 455 36-504 19-527 (757)
9 KOG1058 Vesicle coat complex C 100.0 8.2E-37 1.8E-41 351.4 31.3 408 38-464 23-468 (948)
10 KOG1078 Vesicle coat complex C 100.0 2E-27 4.3E-32 276.5 35.0 443 36-495 23-494 (865)
11 COG5240 SEC21 Vesicle coat com 99.9 4.8E-25 1E-29 248.5 33.6 446 37-497 24-517 (898)
12 PF01602 Adaptin_N: Adaptin N 99.2 2E-09 4.3E-14 127.2 26.8 389 34-432 78-502 (526)
13 PTZ00429 beta-adaptin; Provisi 98.8 3.9E-06 8.5E-11 103.5 32.1 369 36-419 106-511 (746)
14 PRK09687 putative lyase; Provi 98.4 2.8E-05 6.1E-10 86.1 22.6 240 109-396 23-262 (280)
15 KOG1062 Vesicle coat complex A 98.4 0.00011 2.3E-09 88.7 27.6 280 164-457 111-453 (866)
16 PRK13800 putative oxidoreducta 98.4 9.1E-05 2E-09 94.2 28.2 273 110-454 622-894 (897)
17 KOG1059 Vesicle coat complex A 98.3 0.00033 7.1E-09 83.7 28.9 331 9-348 17-410 (877)
18 PLN03200 cellulose synthase-in 98.2 0.016 3.6E-07 78.0 42.3 321 164-499 408-767 (2102)
19 PRK13800 putative oxidoreducta 98.0 0.0012 2.6E-08 84.3 27.2 274 36-370 622-895 (897)
20 PRK09687 putative lyase; Provi 98.0 0.0017 3.7E-08 72.1 23.7 254 163-456 26-279 (280)
21 PF10508 Proteasom_PSMB: Prote 98.0 0.0073 1.6E-07 72.4 30.6 315 53-370 59-461 (503)
22 KOG0213 Splicing factor 3b, su 97.8 0.042 9.2E-07 66.5 32.9 204 10-227 591-828 (1172)
23 KOG2171 Karyopherin (importin) 97.8 0.048 1E-06 69.0 35.2 403 77-494 123-592 (1075)
24 PLN03200 cellulose synthase-in 97.8 0.074 1.6E-06 72.0 39.0 366 48-418 417-863 (2102)
25 KOG2023 Nuclear transport rece 97.8 0.0045 9.8E-08 73.8 24.6 315 57-397 379-752 (885)
26 KOG2171 Karyopherin (importin) 97.8 0.07 1.5E-06 67.6 35.6 168 169-338 89-277 (1075)
27 PF10508 Proteasom_PSMB: Prote 97.8 0.014 3E-07 70.0 28.7 230 107-337 75-364 (503)
28 KOG1078 Vesicle coat complex C 97.7 0.033 7.2E-07 67.9 30.0 384 38-434 103-514 (865)
29 KOG1060 Vesicle coat complex A 97.7 0.012 2.7E-07 71.4 25.5 94 38-137 111-208 (968)
30 KOG1058 Vesicle coat complex C 97.6 0.0046 9.9E-08 74.6 20.6 319 102-434 13-407 (948)
31 PF14764 SPG48: AP-5 complex s 97.6 0.04 8.7E-07 64.6 27.3 90 407-499 289-399 (459)
32 PF12717 Cnd1: non-SMC mitotic 97.5 0.0023 5E-08 66.1 15.0 90 286-375 1-93 (178)
33 KOG0212 Uncharacterized conser 97.3 0.18 3.8E-06 59.9 28.9 251 163-416 128-407 (675)
34 PF05804 KAP: Kinesin-associat 97.3 0.038 8.2E-07 68.5 24.7 283 162-459 333-652 (708)
35 KOG0212 Uncharacterized conser 97.2 0.2 4.4E-06 59.5 27.8 338 5-347 8-414 (675)
36 cd00256 VATPase_H VATPase_H, r 97.2 0.18 3.9E-06 59.3 27.3 333 123-497 52-426 (429)
37 KOG1824 TATA-binding protein-i 97.1 0.1 2.2E-06 64.9 25.0 325 30-369 688-1067(1233)
38 KOG0166 Karyopherin (importin) 97.1 0.22 4.8E-06 59.3 26.6 212 162-375 154-394 (514)
39 KOG2023 Nuclear transport rece 97.1 0.21 4.7E-06 60.2 26.2 161 161-350 129-296 (885)
40 COG5181 HSH155 U2 snRNP splice 96.8 0.37 7.9E-06 57.8 24.8 262 221-497 548-830 (975)
41 KOG0166 Karyopherin (importin) 96.4 2 4.3E-05 51.5 27.7 281 72-364 109-426 (514)
42 COG5240 SEC21 Vesicle coat com 96.3 0.23 4.9E-06 59.1 18.7 264 94-369 249-550 (898)
43 KOG2274 Predicted importin 9 [ 96.3 4.5 9.8E-05 50.9 30.2 179 109-302 494-689 (1005)
44 cd00020 ARM Armadillo/beta-cat 96.2 0.026 5.7E-07 52.5 8.9 100 274-373 8-119 (120)
45 PF12717 Cnd1: non-SMC mitotic 96.1 0.054 1.2E-06 56.1 11.4 91 267-357 19-113 (178)
46 KOG1242 Protein containing ada 96.0 2.5 5.4E-05 51.2 26.0 332 34-434 95-445 (569)
47 PF04826 Arm_2: Armadillo-like 95.8 0.57 1.2E-05 51.6 18.5 138 111-262 56-202 (254)
48 KOG0213 Splicing factor 3b, su 95.8 7.4 0.00016 48.2 33.6 263 220-497 742-1025(1172)
49 KOG1077 Vesicle coat complex A 95.7 7.6 0.00016 47.9 32.0 316 90-417 61-435 (938)
50 COG5096 Vesicle coat complex, 95.6 1.1 2.4E-05 55.9 21.6 123 250-373 33-155 (757)
51 KOG1824 TATA-binding protein-i 95.5 11 0.00024 47.9 37.4 399 35-435 212-746 (1233)
52 KOG1240 Protein kinase contain 95.5 1.3 2.8E-05 57.0 21.4 255 158-427 460-747 (1431)
53 KOG1061 Vesicle coat complex A 95.4 0.82 1.8E-05 56.3 19.1 123 71-193 120-272 (734)
54 PF05918 API5: Apoptosis inhib 95.2 8.8 0.00019 46.8 26.7 261 73-355 24-320 (556)
55 PF05804 KAP: Kinesin-associat 95.1 1.6 3.5E-05 54.5 20.7 309 172-497 261-608 (708)
56 KOG1241 Karyopherin (importin) 94.9 7.5 0.00016 48.3 25.0 295 165-463 95-439 (859)
57 KOG1020 Sister chromatid cohes 94.8 8.7 0.00019 50.9 26.4 143 249-396 789-938 (1692)
58 PF04826 Arm_2: Armadillo-like 94.8 0.33 7.1E-06 53.4 12.4 125 274-400 13-148 (254)
59 PF12755 Vac14_Fab1_bd: Vacuol 94.5 0.18 3.9E-06 47.5 8.2 66 269-335 23-92 (97)
60 KOG2259 Uncharacterized conser 94.3 18 0.0004 44.5 28.2 260 160-428 234-524 (823)
61 TIGR02270 conserved hypothetic 94.2 3.6 7.7E-05 48.5 20.0 198 250-497 100-297 (410)
62 KOG2759 Vacuolar H+-ATPase V1 94.0 16 0.00035 42.8 25.9 342 122-497 63-439 (442)
63 PF12348 CLASP_N: CLASP N term 93.6 0.85 1.8E-05 48.4 12.4 34 163-196 56-89 (228)
64 PF12719 Cnd3: Nuclear condens 93.6 2.9 6.3E-05 46.8 17.1 143 281-461 35-187 (298)
65 cd00020 ARM Armadillo/beta-cat 93.4 0.77 1.7E-05 42.6 10.5 102 236-338 8-119 (120)
66 PF13646 HEAT_2: HEAT repeats; 93.4 0.52 1.1E-05 42.0 9.0 72 112-209 2-74 (88)
67 COG1413 FOG: HEAT repeat [Ener 93.3 5.6 0.00012 44.8 19.0 78 274-359 181-258 (335)
68 KOG1020 Sister chromatid cohes 93.2 1.8 4E-05 56.7 16.1 104 248-354 828-937 (1692)
69 KOG0915 Uncharacterized conser 93.1 44 0.00094 44.9 32.3 237 79-320 825-1178(1702)
70 KOG1242 Protein containing ada 93.0 27 0.00059 42.6 27.0 261 35-303 134-445 (569)
71 PF13646 HEAT_2: HEAT repeats; 93.0 0.43 9.3E-06 42.6 7.8 84 276-369 2-87 (88)
72 PF12460 MMS19_C: RNAPII trans 93.0 14 0.00031 43.4 22.3 36 283-318 375-410 (415)
73 COG1413 FOG: HEAT repeat [Ener 92.9 16 0.00034 41.1 22.0 246 73-370 44-300 (335)
74 PF08167 RIX1: rRNA processing 92.8 2 4.4E-05 44.1 13.2 135 157-316 22-157 (165)
75 KOG1241 Karyopherin (importin) 92.5 37 0.0008 42.6 32.0 443 3-497 162-712 (859)
76 PF05918 API5: Apoptosis inhib 92.2 3.7 8E-05 50.0 16.2 124 285-415 34-162 (556)
77 COG5064 SRP1 Karyopherin (impo 91.9 10 0.00022 43.3 17.9 178 161-345 115-320 (526)
78 KOG1525 Sister chromatid cohes 91.9 58 0.0013 43.6 31.9 182 215-400 239-438 (1266)
79 TIGR02270 conserved hypothetic 91.8 31 0.00066 40.8 22.9 206 163-413 89-294 (410)
80 PF12348 CLASP_N: CLASP N term 91.7 4.3 9.3E-05 43.1 14.7 169 320-497 17-207 (228)
81 KOG0414 Chromosome condensatio 91.6 2.3 5.1E-05 54.7 14.1 177 180-356 900-1082(1251)
82 KOG2956 CLIP-associating prote 91.5 6.6 0.00014 46.4 16.5 141 272-418 286-438 (516)
83 KOG4224 Armadillo repeat prote 91.5 2.5 5.4E-05 48.4 12.7 294 79-375 92-447 (550)
84 KOG0168 Putative ubiquitin fus 91.3 12 0.00025 47.2 19.0 172 112-302 170-364 (1051)
85 PF12231 Rif1_N: Rap1-interact 90.3 29 0.00062 40.4 20.8 65 269-333 228-297 (372)
86 KOG2038 CAATT-binding transcri 90.3 35 0.00076 42.8 21.5 206 163-381 344-593 (988)
87 PF12755 Vac14_Fab1_bd: Vacuol 90.0 1 2.3E-05 42.4 7.0 51 288-338 1-55 (97)
88 PF10363 DUF2435: Protein of u 89.8 0.65 1.4E-05 43.4 5.5 70 112-193 6-76 (92)
89 KOG1248 Uncharacterized conser 89.4 85 0.0018 41.3 28.6 128 209-338 627-766 (1176)
90 PF08569 Mo25: Mo25-like; Int 89.4 42 0.0009 38.7 20.6 248 13-302 10-283 (335)
91 PF06375 BLVR: Bovine leukaemi 89.3 0.11 2.4E-06 52.8 -0.1 49 735-783 2-58 (154)
92 KOG0168 Putative ubiquitin fus 89.3 29 0.00064 43.9 20.1 190 162-351 337-597 (1051)
93 KOG1992 Nuclear export recepto 89.2 74 0.0016 40.4 25.3 304 28-361 354-715 (960)
94 KOG4224 Armadillo repeat prote 89.1 26 0.00056 40.6 18.0 208 116-329 215-468 (550)
95 PF12719 Cnd3: Nuclear condens 88.6 13 0.00029 41.5 15.9 114 238-374 30-143 (298)
96 KOG4199 Uncharacterized conser 88.4 54 0.0012 37.8 21.1 89 286-375 255-360 (461)
97 PF14664 RICTOR_N: Rapamycin-i 88.3 40 0.00087 39.3 19.9 219 272-497 24-270 (371)
98 COG5215 KAP95 Karyopherin (imp 88.2 73 0.0016 39.0 24.9 126 283-412 231-373 (858)
99 PF14500 MMS19_N: Dos2-interac 88.0 43 0.00094 37.2 19.1 131 284-418 93-240 (262)
100 KOG2213 Apoptosis inhibitor 5/ 87.7 28 0.00061 40.6 17.4 59 299-357 50-108 (460)
101 KOG1991 Nuclear transport rece 87.6 1E+02 0.0022 40.0 32.4 67 123-191 88-158 (1010)
102 PF11698 V-ATPase_H_C: V-ATPas 87.4 1 2.3E-05 44.0 5.3 65 274-338 44-114 (119)
103 KOG1525 Sister chromatid cohes 87.2 1.3E+02 0.0027 40.7 30.2 162 324-497 236-406 (1266)
104 PF13251 DUF4042: Domain of un 86.5 11 0.00024 39.6 12.7 122 167-305 47-177 (182)
105 PF12530 DUF3730: Protein of u 86.0 38 0.00082 36.8 17.0 85 289-374 100-185 (234)
106 PF05004 IFRD: Interferon-rela 85.2 74 0.0016 36.2 21.0 192 164-356 47-284 (309)
107 COG5218 YCG1 Chromosome conden 84.8 21 0.00046 43.5 15.0 69 269-337 87-159 (885)
108 COG5064 SRP1 Karyopherin (impo 84.1 49 0.0011 38.1 16.7 207 162-373 159-397 (526)
109 KOG0915 Uncharacterized conser 84.0 1.8E+02 0.0039 39.6 28.9 169 171-359 1142-1330(1702)
110 cd03568 VHS_STAM VHS domain fa 83.0 4.2 9.1E-05 41.1 7.5 86 248-337 16-108 (144)
111 KOG2025 Chromosome condensatio 82.9 23 0.0005 44.0 14.6 34 601-634 540-573 (892)
112 cd03561 VHS VHS domain family; 82.6 4.8 0.0001 39.8 7.6 86 248-337 16-110 (133)
113 KOG0946 ER-Golgi vesicle-tethe 82.5 1.5E+02 0.0033 37.7 26.7 46 163-208 169-219 (970)
114 COG5181 HSH155 U2 snRNP splice 82.4 56 0.0012 40.2 17.2 45 111-155 283-327 (975)
115 PF12830 Nipped-B_C: Sister ch 81.5 59 0.0013 34.0 15.7 69 269-340 4-75 (187)
116 KOG2137 Protein kinase [Signal 81.4 38 0.00082 42.2 15.9 148 212-375 287-439 (700)
117 PF10363 DUF2435: Protein of u 80.6 7.7 0.00017 36.3 7.7 63 313-375 6-73 (92)
118 PF01603 B56: Protein phosphat 79.6 64 0.0014 38.1 16.8 192 161-356 134-347 (409)
119 KOG0413 Uncharacterized conser 78.3 9.6 0.00021 48.4 9.5 141 284-424 980-1126(1529)
120 PF08167 RIX1: rRNA processing 78.1 62 0.0014 33.2 14.3 126 268-424 20-153 (165)
121 PF13513 HEAT_EZ: HEAT-like re 76.7 8.7 0.00019 31.5 6.2 52 123-186 1-54 (55)
122 KOG1240 Protein kinase contain 76.7 79 0.0017 41.8 16.9 62 313-374 581-646 (1431)
123 PF03224 V-ATPase_H_N: V-ATPas 76.0 81 0.0018 35.5 15.8 103 161-263 106-225 (312)
124 cd03567 VHS_GGA VHS domain fam 76.0 10 0.00023 38.1 7.7 86 248-337 17-114 (139)
125 PF03224 V-ATPase_H_N: V-ATPas 75.8 1.1E+02 0.0024 34.4 16.8 169 171-342 68-272 (312)
126 cd00197 VHS_ENTH_ANTH VHS, ENT 74.6 13 0.00028 35.6 7.7 86 249-338 17-114 (115)
127 PF13513 HEAT_EZ: HEAT-like re 73.4 6.2 0.00014 32.4 4.5 50 287-336 1-54 (55)
128 KOG2274 Predicted importin 9 [ 73.3 2.9E+02 0.0062 35.9 31.8 189 105-305 445-649 (1005)
129 KOG0211 Protein phosphatase 2A 71.9 3E+02 0.0064 35.4 22.0 276 99-375 306-667 (759)
130 PF12765 Cohesin_HEAT: HEAT re 71.8 3.5 7.7E-05 32.9 2.6 39 296-334 2-42 (42)
131 COG5218 YCG1 Chromosome conden 70.8 1E+02 0.0022 38.0 15.0 155 211-374 60-232 (885)
132 PF11707 Npa1: Ribosome 60S bi 70.0 1E+02 0.0022 35.2 14.9 125 269-407 20-154 (330)
133 PF11698 V-ATPase_H_C: V-ATPas 69.8 16 0.00034 36.0 7.0 44 260-303 71-116 (119)
134 KOG2259 Uncharacterized conser 69.3 3.1E+02 0.0067 34.5 20.4 181 248-434 210-457 (823)
135 cd03569 VHS_Hrs_Vps27p VHS dom 67.3 21 0.00045 36.0 7.6 86 248-337 20-112 (142)
136 PLN03076 ARF guanine nucleotid 66.9 5.4E+02 0.012 36.4 26.5 125 211-337 1150-1297(1780)
137 KOG4413 26S proteasome regulat 66.8 2.5E+02 0.0054 32.5 18.2 217 114-374 87-333 (524)
138 KOG1222 Kinesin associated pro 66.2 3E+02 0.0066 33.3 23.0 147 306-459 500-666 (791)
139 KOG1293 Proteins containing ar 65.7 53 0.0011 40.6 11.6 112 235-348 419-544 (678)
140 COG5098 Chromosome condensatio 65.2 48 0.001 41.2 11.1 134 285-422 908-1044(1128)
141 PF12530 DUF3730: Protein of u 64.7 2.1E+02 0.0046 31.0 19.5 105 269-375 34-152 (234)
142 PF03378 CAS_CSE1: CAS/CSE pro 64.2 2.5E+02 0.0054 33.6 16.9 164 199-374 28-208 (435)
143 PF14664 RICTOR_N: Rapamycin-i 63.6 1.9E+02 0.004 33.9 15.5 150 296-455 6-176 (371)
144 PF14500 MMS19_N: Dos2-interac 63.6 2.5E+02 0.0053 31.3 17.8 75 276-352 2-87 (262)
145 PF00790 VHS: VHS domain; Int 63.3 22 0.00047 35.5 6.8 84 249-336 22-115 (140)
146 PF12460 MMS19_C: RNAPII trans 63.2 3.1E+02 0.0067 32.3 32.5 150 342-499 186-355 (415)
147 KOG1820 Microtubule-associated 63.2 1.3E+02 0.0029 38.7 15.1 196 73-315 254-457 (815)
148 PF02985 HEAT: HEAT repeat; I 63.2 12 0.00027 27.4 3.8 28 162-189 2-29 (31)
149 COG5231 VMA13 Vacuolar H+-ATPa 63.1 2.9E+02 0.0062 32.0 18.8 67 273-339 356-428 (432)
150 KOG1967 DNA repair/transcripti 60.3 49 0.0011 42.4 10.3 57 283-339 919-982 (1030)
151 KOG2956 CLIP-associating prote 60.1 67 0.0015 38.4 10.8 81 273-357 406-491 (516)
152 KOG4535 HEAT and armadillo rep 59.9 34 0.00074 40.8 8.4 30 161-190 151-180 (728)
153 PF06371 Drf_GBD: Diaphanous G 59.1 67 0.0015 32.8 9.9 27 312-338 160-186 (187)
154 KOG3723 PH domain protein Melt 59.0 2.9E+02 0.0064 34.0 15.8 175 165-348 160-346 (851)
155 PF01347 Vitellogenin_N: Lipop 58.1 4.4E+02 0.0095 32.5 22.7 67 286-356 537-603 (618)
156 KOG2137 Protein kinase [Signal 57.9 4.9E+02 0.011 33.0 18.7 197 172-374 285-496 (700)
157 PF01347 Vitellogenin_N: Lipop 56.9 3.4E+02 0.0075 33.4 17.2 17 210-226 502-518 (618)
158 PF08713 DNA_alkylation: DNA a 56.6 1.6E+02 0.0034 30.8 12.4 135 78-237 57-194 (213)
159 PF04388 Hamartin: Hamartin pr 55.9 45 0.00097 42.0 9.3 76 123-207 82-158 (668)
160 KOG1991 Nuclear transport rece 55.0 6.2E+02 0.014 33.3 22.8 51 176-226 388-446 (1010)
161 KOG1104 Nuclear cap-binding co 54.8 3.5E+02 0.0076 34.3 16.1 116 330-457 503-623 (759)
162 smart00288 VHS Domain present 53.8 49 0.0011 32.8 7.5 55 248-306 16-70 (133)
163 KOG3687 Tuberin - Rap/ran-GTPa 53.4 3E+02 0.0064 36.1 15.1 179 268-455 62-287 (1697)
164 cd03572 ENTH_epsin_related ENT 53.4 25 0.00055 34.7 5.2 47 296-342 24-70 (122)
165 KOG4535 HEAT and armadillo rep 51.7 1.4E+02 0.0031 36.0 11.6 55 250-304 121-181 (728)
166 PF12830 Nipped-B_C: Sister ch 51.6 1.6E+02 0.0034 30.9 11.2 126 306-434 4-141 (187)
167 KOG2160 Armadillo/beta-catenin 51.1 2.5E+02 0.0053 32.6 13.2 71 274-344 167-245 (342)
168 PF11865 DUF3385: Domain of un 51.0 1.6E+02 0.0035 30.2 10.9 34 276-309 13-47 (160)
169 PF04388 Hamartin: Hamartin pr 50.8 1.2E+02 0.0025 38.4 11.7 153 163-333 7-165 (668)
170 KOG1949 Uncharacterized conser 50.7 4.9E+02 0.011 33.1 16.1 209 91-342 154-373 (1005)
171 cd03565 VHS_Tom1 VHS domain fa 50.6 53 0.0011 33.1 7.2 86 248-337 17-113 (141)
172 COG5098 Chromosome condensatio 50.5 1.2E+02 0.0026 38.0 11.1 111 229-340 293-416 (1128)
173 KOG2025 Chromosome condensatio 50.2 6.5E+02 0.014 32.1 28.1 170 13-186 64-256 (892)
174 PF05004 IFRD: Interferon-rela 50.0 3.9E+02 0.0084 30.4 14.8 111 193-303 125-258 (309)
175 PF08713 DNA_alkylation: DNA a 49.9 1.9E+02 0.0042 30.1 11.7 135 277-420 55-189 (213)
176 PF11841 DUF3361: Domain of un 49.7 2.4E+02 0.0051 29.4 11.7 85 288-374 32-131 (160)
177 cd00256 VATPase_H VATPase_H, r 47.8 5.7E+02 0.012 30.7 26.2 65 273-337 353-423 (429)
178 KOG0413 Uncharacterized conser 47.2 8.2E+02 0.018 32.4 19.2 69 272-340 615-686 (1529)
179 smart00638 LPD_N Lipoprotein N 46.5 6.2E+02 0.013 31.0 17.0 79 274-356 478-559 (574)
180 KOG0414 Chromosome condensatio 46.3 9E+02 0.019 32.6 36.4 65 236-301 542-606 (1251)
181 PF10165 Ric8: Guanine nucleot 45.3 6.1E+02 0.013 30.4 16.8 58 248-305 44-111 (446)
182 PF02985 HEAT: HEAT repeat; I 45.0 35 0.00076 25.0 3.7 24 278-301 5-28 (31)
183 KOG1087 Cytosolic sorting prot 44.9 80 0.0017 38.1 8.6 63 273-335 38-108 (470)
184 PF13001 Ecm29: Proteasome sta 44.3 4.4E+02 0.0096 32.0 15.0 162 171-339 248-443 (501)
185 KOG2759 Vacuolar H+-ATPase V1 44.3 47 0.001 39.1 6.3 68 235-302 366-438 (442)
186 PF00514 Arm: Armadillo/beta-c 43.3 39 0.00085 26.1 4.0 28 161-188 13-40 (41)
187 cd05128 RasGAP_GAP1_like The G 43.0 2.1E+02 0.0045 32.8 11.3 65 268-335 153-220 (315)
188 PF11864 DUF3384: Domain of un 42.9 6.7E+02 0.014 30.1 27.3 142 229-372 170-328 (464)
189 KOG1243 Protein kinase [Genera 42.6 1.2E+02 0.0026 38.0 9.7 87 270-356 327-415 (690)
190 smart00638 LPD_N Lipoprotein N 41.6 7.4E+02 0.016 30.3 20.7 64 74-137 359-425 (574)
191 PF08767 CRM1_C: CRM1 C termin 41.2 5.9E+02 0.013 29.0 15.4 47 162-208 100-146 (319)
192 KOG4524 Uncharacterized conser 39.9 1E+03 0.022 31.4 19.1 69 271-339 801-876 (1014)
193 COG5116 RPN2 26S proteasome re 39.4 1.2E+02 0.0026 37.2 8.7 146 313-471 519-667 (926)
194 PLN03076 ARF guanine nucleotid 37.4 1.2E+03 0.027 33.0 18.8 38 158-195 1342-1382(1780)
195 PF11701 UNC45-central: Myosin 37.1 1.5E+02 0.0033 30.1 8.2 86 214-299 59-156 (157)
196 PF01603 B56: Protein phosphat 36.9 7.8E+02 0.017 29.1 15.9 74 160-236 297-379 (409)
197 PF08389 Xpo1: Exportin 1-like 36.8 3.9E+02 0.0085 25.7 12.7 49 176-226 4-53 (148)
198 PF13001 Ecm29: Proteasome sta 36.7 7E+02 0.015 30.3 15.0 135 51-195 269-409 (501)
199 cd05391 RasGAP_p120GAP p120GAP 36.4 4.9E+02 0.011 29.8 12.9 65 268-335 147-214 (315)
200 KOG0211 Protein phosphatase 2A 35.9 7E+02 0.015 32.2 15.1 69 268-336 591-661 (759)
201 KOG0835 Cyclin L [General func 35.7 42 0.00091 38.3 4.1 18 921-938 338-355 (367)
202 PF02854 MIF4G: MIF4G domain; 35.4 2.3E+02 0.005 28.8 9.4 47 329-375 2-48 (209)
203 KOG0392 SNF2 family DNA-depend 35.1 9.2E+02 0.02 32.9 15.9 249 79-338 588-882 (1549)
204 KOG2062 26S proteasome regulat 34.1 1.5E+02 0.0033 37.5 8.6 136 313-456 522-676 (929)
205 PF10521 DUF2454: Protein of u 33.7 2.2E+02 0.0047 31.8 9.5 29 313-341 122-150 (282)
206 PF11865 DUF3385: Domain of un 33.3 2.3E+02 0.005 29.0 8.8 38 197-234 10-47 (160)
207 PF14838 INTS5_C: Integrator c 32.5 1.2E+03 0.025 29.9 22.2 186 164-353 185-405 (696)
208 PF12397 U3snoRNP10: U3 small 32.0 3.5E+02 0.0077 25.9 9.5 85 272-358 5-94 (121)
209 PF08767 CRM1_C: CRM1 C termin 31.6 8.3E+02 0.018 27.9 20.8 124 217-340 46-195 (319)
210 PF08623 TIP120: TATA-binding 31.4 82 0.0018 32.9 5.2 63 252-316 46-108 (169)
211 cd03568 VHS_STAM VHS domain fa 31.2 5.2E+02 0.011 26.1 10.8 98 103-208 31-130 (144)
212 cd07920 Pumilio Pumilio-family 31.0 7.7E+02 0.017 27.3 18.1 21 200-220 118-138 (322)
213 KOG4712 Uncharacterized conser 30.5 6.6E+02 0.014 32.9 13.2 127 274-411 222-353 (1335)
214 PF04499 SAPS: SIT4 phosphatas 29.4 5.4E+02 0.012 31.2 12.3 35 162-196 120-155 (475)
215 KOG4653 Uncharacterized conser 27.8 1.5E+03 0.033 29.7 16.8 171 163-340 730-919 (982)
216 cd05394 RasGAP_RASA2 RASA2 (or 27.8 6.8E+02 0.015 28.8 12.0 66 268-336 152-220 (313)
217 KOG2011 Sister chromatid cohes 27.4 1.6E+03 0.036 30.0 22.0 58 283-340 297-356 (1048)
218 KOG0567 HEAT repeat-containing 27.1 3.3E+02 0.007 30.7 9.0 85 110-194 188-285 (289)
219 KOG0835 Cyclin L [General func 27.0 75 0.0016 36.4 4.2 24 600-623 144-167 (367)
220 KOG2199 Signal transducing ada 26.8 3E+02 0.0065 32.5 8.9 107 293-432 28-136 (462)
221 cd05134 RasGAP_RASA3 RASA3 (or 26.8 9.6E+02 0.021 27.5 13.0 65 269-336 153-220 (310)
222 KOG3723 PH domain protein Melt 26.7 8.7E+02 0.019 30.2 12.9 45 278-322 204-248 (851)
223 KOG2140 Uncharacterized conser 26.6 5.1E+02 0.011 31.9 11.0 69 331-408 168-237 (739)
224 PF14676 FANCI_S2: FANCI solen 25.8 5.7E+02 0.012 26.3 10.1 98 269-370 55-157 (158)
225 PF11935 DUF3453: Domain of un 25.7 9E+02 0.019 26.4 13.7 142 118-282 2-162 (239)
226 KOG4199 Uncharacterized conser 25.2 1.2E+03 0.025 27.5 20.5 76 248-325 283-365 (461)
227 KOG1993 Nuclear transport rece 25.0 1.2E+03 0.025 30.4 14.0 47 160-206 526-576 (978)
228 PF08569 Mo25: Mo25-like; Int 25.0 1.1E+03 0.024 27.2 17.7 113 275-420 166-287 (335)
229 KOG1517 Guanine nucleotide bin 24.7 1.1E+03 0.024 31.6 13.9 226 122-376 483-734 (1387)
230 KOG2085 Serine/threonine prote 24.7 2.8E+02 0.0061 32.9 8.3 133 103-236 279-423 (457)
231 PF06025 DUF913: Domain of Unk 24.6 5.5E+02 0.012 30.2 11.0 32 164-195 113-144 (379)
232 PF10274 ParcG: Parkin co-regu 24.4 1.8E+02 0.0038 30.9 6.2 81 272-357 79-165 (183)
233 PF12074 DUF3554: Domain of un 24.2 1.1E+03 0.023 26.8 19.0 220 123-358 1-257 (339)
234 PF07778 CENP-I: Mis6 ; Inter 24.0 7.4E+02 0.016 30.5 12.1 69 285-355 148-219 (511)
235 KOG4524 Uncharacterized conser 23.7 3.3E+02 0.0072 35.5 9.3 54 140-193 799-880 (1014)
236 PTZ00479 RAP Superfamily; Prov 23.1 1.2E+03 0.025 28.1 12.9 74 172-246 58-131 (435)
237 cd08050 TAF6 TATA Binding Prot 22.6 1.2E+03 0.025 27.1 13.0 136 273-436 178-322 (343)
238 smart00185 ARM Armadillo/beta- 22.5 1E+02 0.0023 22.9 3.1 28 161-188 13-40 (41)
239 PF15442 DUF4629: Domain of un 22.4 72 0.0016 32.6 2.7 34 886-919 61-94 (150)
240 KOG1820 Microtubule-associated 22.0 9.8E+02 0.021 31.2 13.1 87 283-369 305-395 (815)
241 PF08506 Cse1: Cse1; InterPro 21.9 2.4E+02 0.0053 33.0 7.3 146 9-155 177-357 (370)
242 PF14663 RasGEF_N_2: Rapamycin 21.7 1.1E+02 0.0023 29.7 3.8 30 162-191 10-39 (115)
243 PF08506 Cse1: Cse1; InterPro 21.1 1.4E+03 0.03 26.8 16.0 76 285-360 267-361 (370)
244 PF10521 DUF2454: Protein of u 20.1 8.7E+02 0.019 27.1 11.1 68 270-337 116-201 (282)
245 PF00790 VHS: VHS domain; Int 20.1 8.5E+02 0.019 24.1 12.0 41 95-135 28-68 (140)
No 1
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-144 Score=1230.74 Aligned_cols=739 Identities=43% Similarity=0.635 Sum_probs=648.8
Q ss_pred hhhhHHhhhhHHHHHHHHhhcChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCC
Q 040316 5 SIMETLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSP 84 (957)
Q Consensus 5 ~~~~~~f~rsL~dfIr~IR~~k~~E~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~ 84 (957)
+.|+++|+|+|.|||||||+|..+|++||.+++.|||+++++.+.+.|.+|++||.|++|+ |+||+|+.||++++|+|+
T Consensus 6 ~~~~~~f~ksl~dlikgir~~~~~e~~fis~~l~e~r~E~k~~d~~~k~~a~~kl~yl~ml-g~d~swa~f~iveVmsss 84 (877)
T KOG1059|consen 6 APIDRFFEKSLKDLIKGIRSHKEDEEKFISQCLEEIRQELKSDDLNVKSNAVLKLTYLEML-GVDMSWAAFHIVEVMSSS 84 (877)
T ss_pred chHHHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH-cchHHHHhhhhhhhhhhh
Confidence 5899999999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred CccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh---------
Q 040316 85 QFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS--------- 155 (957)
Q Consensus 85 ~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~--------- 155 (957)
+|.+||+||+|++|+|+.++|++||+||+++|||+|+|.|..|+||.+||+|.||++|+||+++|+.+|+|
T Consensus 85 k~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkA 164 (877)
T KOG1059|consen 85 KFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKA 164 (877)
T ss_pred hhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHH
Q 040316 156 ------------NAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFA 223 (957)
Q Consensus 156 ------------~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~ 223 (957)
+|+|.|||||++.|+|+||+|++|||+||||++++||++|++|+|.||++|+++.|||+.|||||+|+
T Consensus 165 Il~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~ 244 (877)
T KOG1059|consen 165 ILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFA 244 (877)
T ss_pred HHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhh-----cCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 040316 224 KLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSS-----LSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALS 298 (957)
Q Consensus 224 ~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~-----l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~ 298 (957)
.++|.||+|++|++++|+++|++|.++|++|||||||+.+ ++++.+.+++|+++|+.|+.++|||+||+||.+|.
T Consensus 245 aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~ 324 (877)
T KOG1059|consen 245 ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMS 324 (877)
T ss_pred hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 67888999999999999999999999999999999
Q ss_pred HHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcCh-HHHHHHHHHHHHHHhhhh
Q 040316 299 IIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDP-EFCNQILGSILSTCCRNL 377 (957)
Q Consensus 299 ~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~-~~r~elI~aI~~ic~~~~ 377 (957)
+|+.+||++|+.|.+.|+.||+|.|.+||.+||+||++||+++|+.+||+.||.|+..+++ .||.+++.+|+.+|++.+
T Consensus 325 KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 325 KILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred cccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCC----cccCCCchHHHHHHHhhh
Q 040316 378 YEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDP----ALLGNPFLHRILSAAAWV 453 (957)
Q Consensus 378 y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~----~~l~~~~~~~~l~a~aWI 453 (957)
|++++||+||+.+|++|.++.|...|..|.+|++|+++|||++|+++|..+..+|.|+ +...|...++++.+||||
T Consensus 405 Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi 484 (877)
T KOG1059|consen 405 YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWI 484 (877)
T ss_pred hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 223344578999999999
Q ss_pred hccCCCCCCCHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccCCChhhHhhhccccc
Q 040316 454 SGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLLHKENISSVNTDNLASEVPESVFARMSCEN 533 (957)
Q Consensus 454 lGEY~~~i~~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (957)
+|||++++.||.++++.|+++++..+|+++|++|+++++|+|.. |+.+.+.+
T Consensus 485 ~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~----~~~~~ee~------------------------ 536 (877)
T KOG1059|consen 485 LGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCS----WCSQFEET------------------------ 536 (877)
T ss_pred HHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHH----HHhhcCcc------------------------
Confidence 99999999999999999999999999999999999999999988 77754420
Q ss_pred ccccccCCCCCccccCCCCCCCCCcccCCccccCCCCccccccccccccccCCCCCchhHHHHHHHHHHHHhcCCCCCCC
Q 040316 534 SDLATSEAPASSEQHDSFNPRNINQSFGDLSIENGGDATVSNSQASTSASLGRNSFTHESIVNLFNIVELALGPLSRSHD 613 (957)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~s~~ 613 (957)
.+++.+..|.+.|+.+|++|..|.|
T Consensus 537 -------------------------------------------------------~~~e~~~sL~~~i~~~l~qf~~s~d 561 (877)
T KOG1059|consen 537 -------------------------------------------------------KDFEGIVSLVNLILSFLEQFSGSSD 561 (877)
T ss_pred -------------------------------------------------------cchhHHHHHHHHHHHHhhcccCccc
Confidence 1356788889999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCccccccchhcccchhHHHHHHhHHhhhcccCCCCchhhccCCCCCCccCCccchhh
Q 040316 614 VEIQERARNVLGFTDLIEQEILNPVVQGEENLARAETEASRVVKLMCDAFSEELGPVSTSAQDRVPVPDGLLLKENLADL 693 (957)
Q Consensus 614 ~EVQERA~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~eL~PVa~~aQ~kV~~P~~LdLd~~l~~l 693 (957)
+||||||.++++|+++++..+.. .++..+...+ ...+..+|++||||||++||+|||||||||||+||+++
T Consensus 562 ~EvQERA~~~~~li~~i~~~~~~-------~~~~~~m~~~--~~~~~~lf~~EL~PVA~kAQrKV~vpdgLDLd~~i~~~ 632 (877)
T KOG1059|consen 562 LEVQERASEVLELIRLIREALAE-------DTDGQPMELS--EVEMSLLFAGELNPVAPKAQRKVPVPDGLDLDEWINEP 632 (877)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh-------cccchhhhhH--HHHHHHHhccccCccchhhcccCCCCCCcCcccccCCc
Confidence 99999999999999999875553 2334444444 33567789999999999999999999999999999999
Q ss_pred HhhhcCCCCCCCccc--cCCCCCCCccccccccccCcCCCCCCCccchhhHHHHHhhcCccccccccccC----CcCCCC
Q 040316 694 ETICGDIQLPLSSSF--SLSSTPLGEAVDISRTNLQSKDETEPSHESTSLLAEHRKRHGLYYLASEKSEG----ASNDYP 767 (957)
Q Consensus 694 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~rk~~~~~yl~~~~~~~----~~~~~~ 767 (957)
|++|.....++.|-- ..++|+-+|+.+.+.-.-++...+....|..+++||||+.||||||++++.+- ..++||
T Consensus 633 ~~~~~~~~sds~sd~d~~~~s~~~~ee~~~~~k~~~~~~~ske~le~~~~~reqe~~nnPyYlks~~~~~~~~~~~~~~e 712 (877)
T KOG1059|consen 633 EAADKELLSDSESDADEDLMSFIMDEELEGRFKDRDSSYESKEELERRRILREQEQMNNPYYLKSSPEAQTKLLTLSEYE 712 (877)
T ss_pred ccccchhcccchhhhhhhhcCccchhhccCcccccchhhcChhhHHHHHHHHHHHHhcCCeeecCCccccccCCCccccc
Confidence 999965554443322 33444444555544433222223334556778999999999999999988773 568999
Q ss_pred CCC-CCCCCCCCCchHHHHHHHhhhhcCCCCCCCCCCCCceEEeec-CCccccccCCc------cccccchhhhhHHhH
Q 040316 768 PAN-DPMSQDKLNDDAEDLLKLTEQSLAPKKKPNQAKPRPVVLKLD-GDEISVAAKKP------ELKDDLLSGVVQDVL 838 (957)
Q Consensus 768 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~ 838 (957)
-.| +|.-+.++.++.---+-+.++ ...+|+++.|++++|+|+| ++....++++. .-.++.+..+|.-+.
T Consensus 713 ~~~~~pei~~~ls~~~~n~l~~~~~--~~e~k~~~g~k~~~~~~~~~~~~~kk~~kr~~~~~t~sd~e~~~~~~vn~~~ 789 (877)
T KOG1059|consen 713 NVNKIPEIQLPLSDPSFNPLSLSQT--LIERKKKKGKKKKKVQKKDDKKVIKKAPKRKDNFQTPSDEESTPLHKVNLAT 789 (877)
T ss_pred cccccchhcccccccccccchhhHH--HHHhhhhccCcccceeecccchhhhcccccccccCCCCcccccHHHHHHHhh
Confidence 888 333333322221111111111 2278999999999999999 77766555442 112445666665443
No 2
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-85 Score=753.45 Aligned_cols=514 Identities=24% Similarity=0.374 Sum_probs=463.9
Q ss_pred hhHHHHHHHHhhcC--hHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccc
Q 040316 13 RDLDDLIKGIRQQQ--IKESLFISKAIEEIRREIKS--TDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFY 88 (957)
Q Consensus 13 rsL~dfIr~IR~~k--~~E~~~I~~elaEIR~eL~S--~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~ 88 (957)
.+|.||||+||+++ ++|++.|++|++.||+.|+. .+...++++|.||+|++|| ||+.+||+++++++++|++|..
T Consensus 8 srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~ML-GypahFGqieclKLias~~f~d 86 (866)
T KOG1062|consen 8 SRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHML-GYPAHFGQIECLKLIASDNFLD 86 (866)
T ss_pred chHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh-CCCccchhhHHHHHhcCCCchH
Confidence 68999999999997 58999999999999999999 5678899999999999997 9999999999999999999999
Q ss_pred hhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh--hhH--------
Q 040316 89 KKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS--NAV-------- 158 (957)
Q Consensus 89 KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~--~Av-------- 158 (957)
||+|||+++.++++++|+++|+||+|+|||+|+|.+++|+||++||+|++||||++|+|+|.+++.| +.|
T Consensus 87 KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca 166 (866)
T KOG1062|consen 87 KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCA 166 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 222
Q ss_pred -HH----------HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCC---CccCchHHHHHHHhh--------------cC
Q 040316 159 -RV----------CFKRLVENLESSEPVILSAVVGVFCELCLKDPR---SYLPLAPEFYKILVD--------------SK 210 (957)
Q Consensus 159 -R~----------~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~---~~l~Lap~L~~iL~~--------------~~ 210 (957)
|. +.++...+|.|+++||+.+++.++.++|..+|+ .|..++|.|+++|.+ .+
T Consensus 167 ~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~ 246 (866)
T KOG1062|consen 167 VRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGIS 246 (866)
T ss_pred HHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCC
Confidence 22 234667889999999999999999999999876 478899999999974 48
Q ss_pred ChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhh-----cCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCC
Q 040316 211 NNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMR-----RTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDD 285 (957)
Q Consensus 211 npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~-----~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ss 285 (957)
+||+||+||++|+.|...+++..+.|.+.|.++.. +|.++||+|||++||+.+.++ ..++.++++.|++||.++
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~-~~LrvlainiLgkFL~n~ 325 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN-SGLRVLAINILGKFLLNR 325 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC-chHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998885 456789999999999997554 689999999999999999
Q ss_pred CchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHH
Q 040316 286 DPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQI 365 (957)
Q Consensus 286 DpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~el 365 (957)
|.|+||+||..|.+.++.+|.++++|+.+|+.||+|||.+||+|||||+|.|+|++|+..||+||+.|+..+|++|+.++
T Consensus 326 d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~ 405 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADI 405 (866)
T ss_pred ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhc-CcchHHHHHHHHHHhcCCcccCCCchH
Q 040316 366 LGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRV-KDVRPALVHVCRNLLIDPALLGNPFLH 444 (957)
Q Consensus 366 I~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rv-p~ir~~av~~l~~lL~d~~~l~~~~~~ 444 (957)
+.+|..++++ |+|+..||+|++++.+..+|+++.+++|..+..++..- ++.+++++.+++..+.... .-.+..+
T Consensus 406 as~I~~laEk----faP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~-~~~is~e 480 (866)
T KOG1062|consen 406 ASKIAELAEK----FAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT-LLDISQE 480 (866)
T ss_pred HHHHHHHHHh----cCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh-hhhhhhh
Confidence 9999999986 37889999999999999999999999999999998876 7889999988877664322 2245677
Q ss_pred HHHHHHhhhhccCCCCCCC--------------HHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhh-----------
Q 040316 445 RILSAAAWVSGEYVEFSRN--------------PFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCA----------- 499 (957)
Q Consensus 445 ~~l~a~aWIlGEY~~~i~~--------------p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~~----------- 499 (957)
.++++++||+||||+++-+ ..++++.++..+. -+..|+++.|+|++|+.++..
T Consensus 481 ~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~--s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~ 558 (866)
T KOG1062|consen 481 PLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHS--SDSTTKGYALTALLKLSSRFHSSSERIKQLIS 558 (866)
T ss_pred hHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 8899999999999976543 2345666666433 348999999999999998764
Q ss_pred ------hhhhhhhccccccccccccCCChhhHhhhcccccccc
Q 040316 500 ------HSYLLHKENISSVNTDNLASEVPESVFARMSCENSDL 536 (957)
Q Consensus 500 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (957)
+..+||++. ||..+|..+.|||+++||+||.+|...
T Consensus 559 ~~~~s~~~elQQRa~-E~~~l~~~~~~lr~siLe~mp~~e~~~ 600 (866)
T KOG1062|consen 559 SYKSSLDTELQQRAV-EYNALFAKDKHLRKSILERMPSCEDIT 600 (866)
T ss_pred HhcccccHHHHHHHH-HHHHHHHHHHHHHHHhcccCccccccc
Confidence 245678887 899999999999999999999888755
No 3
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-78 Score=683.11 Aligned_cols=483 Identities=25% Similarity=0.417 Sum_probs=432.5
Q ss_pred CcchhhhhHHhhhhHHHHHHHHhhcC--hHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHhcCCCCcchhHH
Q 040316 1 MAGTSIMETLFQRDLDDLIKGIRQQQ--IKESLFISKAIEEIRREIKST---DLPTKSAALRKLSYLSSLHGADMSFAAF 75 (957)
Q Consensus 1 ~~~~~~~~~~f~rsL~dfIr~IR~~k--~~E~~~I~~elaEIR~eL~S~---d~~~K~~AL~KLIYL~ML~G~DmS~~~f 75 (957)
|.++..+++ +|||+-||.+||+|+ ..|.++|++|+++||..|++. +.++|+++++||+|++|+ |||++||+|
T Consensus 1 ~~a~~~~~g--mrGL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~ll-g~dIdFGhm 77 (938)
T KOG1077|consen 1 MPAVNNGDG--MRGLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLL-GYDIDFGHM 77 (938)
T ss_pred CCcccCCCC--chhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHh-cCccccchH
Confidence 344444555 499999999999996 456799999999999999987 568999999999999997 999999999
Q ss_pred HHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh
Q 040316 76 HAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS 155 (957)
Q Consensus 76 ~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~ 155 (957)
+.|++++|++|++|.||||+++.++++++|++-|++|+++|||.|.||..++|||+|+++|+..+|++.+.+||-++|.+
T Consensus 78 EaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS 157 (938)
T KOG1077|consen 78 EAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS 157 (938)
T ss_pred HHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred h----------hH---H------------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh--
Q 040316 156 N----------AV---R------------VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD-- 208 (957)
Q Consensus 156 ~----------Av---R------------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~-- 208 (957)
. |+ | .|+.++..+|+|.+.+|+.||.+++.-|++++|+.|..-+|.-+..|..
T Consensus 158 ~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv 237 (938)
T KOG1077|consen 158 GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIV 237 (938)
T ss_pred CcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHH
Confidence 1 21 1 2567899999999999999999999999999999987666665555431
Q ss_pred --------------cCChHHHHHHHHHHHhhccC-ChHHHhHHHHHHHHHhhc-------------CCcchHHHHHHHHH
Q 040316 209 --------------SKNNWLLIKVLKIFAKLATL-EPRLAKRVVEPICEFMRR-------------TEAKSLLFECIRTV 260 (957)
Q Consensus 209 --------------~~npWlqIkILkLL~~l~p~-ep~L~~kLl~~L~~lL~~-------------t~a~SVLyE~I~~I 260 (957)
.++||+|+|++++|..|.+. +|.....+.+.+..+|++ +..++|+||+|+++
T Consensus 238 ~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 238 VVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred hhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 48999999999999999654 566666777777777743 34579999999999
Q ss_pred HhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh--HHHhhhhHhhccccc-CCCHHHHHHHHHHHhhh
Q 040316 261 LSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL--WAVLENKDFVIKSLS-DGDYNIKLESLRLLMSM 337 (957)
Q Consensus 261 i~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p--~~v~~h~~~Il~cL~-D~D~sIR~~ALeLL~~L 337 (957)
++ ++..++++..|++.|+.||.+..+|+||+||.+|.+++...+ +.|..|++.|+..|+ ++|.|||++|+||||+|
T Consensus 318 ~h-~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 318 IH-LDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HH-cCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 98 566689999999999999999999999999999999988654 789999999999999 99999999999999999
Q ss_pred cCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhc
Q 040316 338 VSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRV 417 (957)
Q Consensus 338 vne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rv 417 (957)
|+.+|++.||.||+.|+..+|..+|+|++.++..++++ | ++|+.||||+.++|++++|+++.++||.++++|++++
T Consensus 397 cD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEK--y--AtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn 472 (938)
T KOG1077|consen 397 CDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEK--Y--ATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN 472 (938)
T ss_pred hchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH--h--cCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc
Confidence 99999999999999999999999999999999888875 4 7999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCC-----HHHHHHHHhcccccCCCHHHHHHHHHHHH
Q 040316 418 KDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRN-----PFELMEALLQPRTNLLLPSIRAVYVQSVF 492 (957)
Q Consensus 418 p~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~-----p~~iL~~LL~~~~~~es~~Vq~~iLtAl~ 492 (957)
++++.|+.+.+.++|.-++ -...++++.+||+||||+++.+ |...+. ++..++...++.+|+.+|++..
T Consensus 473 edlq~yaak~~fe~Lq~~a-----~hE~mVKvggyiLGEfg~LIa~~prss~~~qFs-llh~K~~~~s~~tr~lLLtTyi 546 (938)
T KOG1077|consen 473 EDLQGYAAKRLFEYLQKPA-----CHENMVKVGGYILGEFGNLIADDPRSSPAVQFS-LLHEKLHLCSPVTRALLLTTYI 546 (938)
T ss_pred hhhhHHHHHHHHHHHhhhH-----HHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHH-HHHHHhccCChhHHHHHHHHHH
Confidence 9999999999999986433 2455789999999999999886 444554 6777899999999999999999
Q ss_pred HHHHH
Q 040316 493 KVLIF 497 (957)
Q Consensus 493 Klf~~ 497 (957)
|++..
T Consensus 547 Kl~nl 551 (938)
T KOG1077|consen 547 KLINL 551 (938)
T ss_pred HHHhh
Confidence 99766
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=9.2e-68 Score=636.52 Aligned_cols=465 Identities=18% Similarity=0.215 Sum_probs=403.2
Q ss_pred HHHHHhhcChHHHHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhH
Q 040316 18 LIKGIRQQQIKESLFI----SKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGY 93 (957)
Q Consensus 18 fIr~IR~~k~~E~~~I----~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGY 93 (957)
+=+..|... ...+|+ ..|++|||++|++++..+|+++|+|+||+.+ .|+|||++|++||++|+|+++++|||||
T Consensus 12 ~~~~~~~~~-~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt-~G~DvS~LF~dVvk~~~S~d~elKKLvY 89 (746)
T PTZ00429 12 IQRKLEETK-TGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMT-MGRDVSYLFVDVVKLAPSTDLELKKLVY 89 (746)
T ss_pred HHHHhhcCC-CccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCCchHHHHHHHHHhCCCCHHHHHHHH
Confidence 333444443 334555 4599999999999999999999999999655 6999999999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh--hHHH-----------
Q 040316 94 HAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN--AVRV----------- 160 (957)
Q Consensus 94 Laas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~--AvR~----------- 160 (957)
||++.|++.++|+++|+||+|+|||+|+||++||+|||+||+|+++++++.+.+.|.+++.|. .||.
T Consensus 90 LYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 90 LYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH 169 (746)
T ss_pred HHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999992 3331
Q ss_pred ----------HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh--cCChHHHHHHHHHHHhhccC
Q 040316 161 ----------CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD--SKNNWLLIKVLKIFAKLATL 228 (957)
Q Consensus 161 ----------~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~--~~npWlqIkILkLL~~l~p~ 228 (957)
+.++|.++|.|.|++|+++|+.+|++|+..+|..|....+.+.+++.. .+++|+|+.||++|..|.|.
T Consensus 170 ~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~ 249 (746)
T PTZ00429 170 DDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS 249 (746)
T ss_pred hCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Confidence 235788899999999999999999999998887664444445555442 57999999999999999999
Q ss_pred ChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCC-cHHHHHHHHHHHHH---hhcCCCchHHHHHHHHHHHHhhhC
Q 040316 229 EPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSE-YESAVKLAVVKVRE---FLVDDDPNLKYLGLQALSIIAPKH 304 (957)
Q Consensus 229 ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~-~~~li~l~v~~L~~---fL~ssDpNlrYvaL~~L~~Iv~~~ 304 (957)
+......+++.+.+.+++ .+.||+|+|++++++..+. .++++..++.+++. +|.++++|+||++|+++..|++.+
T Consensus 250 ~~~e~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 250 DKESAETLLTRVLPRMSH-QNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred CcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHC
Confidence 888888899999999988 5689999999999986543 25677777777654 447889999999999999999999
Q ss_pred hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccch
Q 040316 305 LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDF 384 (957)
Q Consensus 305 p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~df 384 (957)
|.+|+.|.+.||++++|| .+||++||++|+.|||++|+..|++||.+|+.+.|.+|++++|++|+.+|.+ | ....
T Consensus 329 P~lf~~~~~~Ff~~~~Dp-~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k--~--~~~a 403 (746)
T PTZ00429 329 PNLLRTNLDSFYVRYSDP-PFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK--V--DSVA 403 (746)
T ss_pred HHHHHHHHHhhhcccCCc-HHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh--C--hHHH
Confidence 999999999999999999 6799999999999999999999999999999999999999999999988875 3 3467
Q ss_pred HHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCH
Q 040316 385 DWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNP 464 (957)
Q Consensus 385 eWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p 464 (957)
+|||++|++++.....++ .+++.++++|++++|+. +++..++..+. .+.+..++++.+++||+|||++.+++.
T Consensus 404 ~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~--~il~~L~~~~~----~~~i~e~~AKaaiiWILGEy~~~I~~a 476 (746)
T PTZ00429 404 PDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPEL--LMLDTLVTDYG----ADEVVEEEAKVSLLWMLGEYCDFIENG 476 (746)
T ss_pred HHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccH--HHHHHHHHhhc----ccccccHHHHHHHHHHHHhhHhhHhhH
Confidence 899999999998876665 47889999999999974 34555544321 234678899999999999999999999
Q ss_pred HHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHh
Q 040316 465 FELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFC 498 (957)
Q Consensus 465 ~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~ 498 (957)
+++++.++. +|..++++||+++|++++|+|+++
T Consensus 477 ~~~L~~~i~-~f~~E~~~VqlqlLta~vKlfl~~ 509 (746)
T PTZ00429 477 KDIIQRFID-TIMEHEQRVQLAILSAAVKMFLRD 509 (746)
T ss_pred HHHHHHHHh-hhccCCHHHHHHHHHHHHHHHhcC
Confidence 999998886 699999999999999999999883
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=6.5e-68 Score=621.21 Aligned_cols=452 Identities=30% Similarity=0.485 Sum_probs=405.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHH
Q 040316 29 ESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVIL 108 (957)
Q Consensus 29 E~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlll 108 (957)
|++++.+|++++++.++ .+.++|+++++||+|++|+ |+|++|++++|+++++|+++..||+||||++.+++.++|+++
T Consensus 1 ~~~~~~~el~~~~~~~~-~~~~~~~~~l~kli~~~~~-G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~ 78 (526)
T PF01602_consen 1 ERKRISQELAKILNSFK-IDISKKKEALKKLIYLMML-GYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI 78 (526)
T ss_dssp HHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHHHT-T---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred CcchHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHc-CCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH
Confidence 78999999999999998 6778999999999999885 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh--hHH-------------------H-HHHHHH
Q 040316 109 LITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN--AVR-------------------V-CFKRLV 166 (957)
Q Consensus 109 LatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~--AvR-------------------~-~~~kL~ 166 (957)
|+||+|+|||+|+||++||+||++||+++++++++.+.+.|.++++|+ .|| . +++.+.
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~ 158 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLK 158 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999992 222 2 367788
Q ss_pred hhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHh---hcCChHHHHHHHHHHHhhccCChHHH--hHHHHHHH
Q 040316 167 ENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILV---DSKNNWLLIKVLKIFAKLATLEPRLA--KRVVEPIC 241 (957)
Q Consensus 167 elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~---~~~npWlqIkILkLL~~l~p~ep~L~--~kLl~~L~ 241 (957)
.+|.|.|++|+.+|+.+++++ +.+++.|..++|.+++.|. ..++||+|++++++|..|++.++... ..+++.+.
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~ 237 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLL 237 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHH
Confidence 899999999999999999999 6666666688899999987 57999999999999999999999888 77999999
Q ss_pred HHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhccccc-
Q 040316 242 EFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLS- 320 (957)
Q Consensus 242 ~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~- 320 (957)
+++++ .+.+|+|||+++++.. ...+.+.+.+++.|.+||.++++|+||++|.+|..|+..+|..+. +...++.++.
T Consensus 238 ~~l~s-~~~~V~~e~~~~i~~l-~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~ 314 (526)
T PF01602_consen 238 NLLQS-SSPSVVYEAIRLIIKL-SPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLY 314 (526)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHC
T ss_pred HHhhc-cccHHHHHHHHHHHHh-hcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheecC
Confidence 99986 7799999999999985 445567889999999999999999999999999999999976666 4444444555
Q ss_pred CCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCC
Q 040316 321 DGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKS-DPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPH 399 (957)
Q Consensus 321 D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~s-D~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~ 399 (957)
|+|.+||++||++|+.|+|++|+..|+++|++|+.+. |.+|+++++.+|+.+|.++ .++++||++++++++...+
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~----~~~~~~~v~~l~~ll~~~~ 390 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF----PPDAEWYVDTLLKLLEISG 390 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH----GSSHHHHHHHHHHHHHCTG
T ss_pred CCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc----CchHHHHHHHHHHhhhhcc
Confidence 8889999999999999999999999999999999554 8999999999999999873 5789999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCC---HHHHHHHHhcccc
Q 040316 400 CQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRN---PFELMEALLQPRT 476 (957)
Q Consensus 400 ~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~---p~~iL~~LL~~~~ 476 (957)
.++..+++..+++++.++|+.+.+++..+++++.+ +..++++++++|++|||++.+++ +.++++.++. +|
T Consensus 391 ~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~------~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~-~~ 463 (526)
T PF01602_consen 391 DYVSNEIINVIRDLLSNNPELREKILKKLIELLED------ISSPEALAAAIWILGEYGELIENTESAPDILRSLIE-NF 463 (526)
T ss_dssp GGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS------SSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHH-HH
T ss_pred ccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH------hhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHH-hh
Confidence 99999999999999999999999999999988854 45678999999999999999998 8999998766 68
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 040316 477 NLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 477 ~~es~~Vq~~iLtAl~Klf~~ 497 (957)
..+++.||..+|++++|+|.+
T Consensus 464 ~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 464 IEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999977
No 6
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-53 Score=491.71 Aligned_cols=440 Identities=18% Similarity=0.235 Sum_probs=385.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHH
Q 040316 37 IEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRK 116 (957)
Q Consensus 37 laEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkK 116 (957)
-+++++.|.|+....|++||+++|.+.| +|.|+|-+|+.||++++|++.+.||++|+|+.+|+++++|+++|.||+|||
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA-~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk 115 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIA-KGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQK 115 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHh
Confidence 3679999999999999999999999765 899999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh--hHHH----HHH---------------HHHhhhcCCChh
Q 040316 117 DLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN--AVRV----CFK---------------RLVENLESSEPV 175 (957)
Q Consensus 117 DL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~--AvR~----~~~---------------kL~elL~D~D~s 175 (957)
+|.|+||.+||.|||+|++|+.|-+++.+.-.|.++..|. .||. +++ -+..+|.|.+|.
T Consensus 116 ~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~spl 195 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPL 195 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999998888888888883 2332 122 345678899999
Q ss_pred HHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh---cCChHHHHHHHHHHHhhccC---ChHH-----------------
Q 040316 176 ILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD---SKNNWLLIKVLKIFAKLATL---EPRL----------------- 232 (957)
Q Consensus 176 Vv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~---~~npWlqIkILkLL~~l~p~---ep~L----------------- 232 (957)
|+++|+.++.|+|+.+-+ |++..|+.|++ ..++|+|+.+|++|.+|++. +|..
T Consensus 196 VvgsAv~AF~evCPerld----LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~ 271 (968)
T KOG1060|consen 196 VVGSAVMAFEEVCPERLD----LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDK 271 (968)
T ss_pred chhHHHHHHHHhchhHHH----HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccccccc
Confidence 999999999999998865 56666777765 47999999999999999873 3311
Q ss_pred -------------HhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 040316 233 -------------AKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSI 299 (957)
Q Consensus 233 -------------~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~ 299 (957)
.+.+++...+++++ .+.||++.|++++.+.-+. .-+..+++.|.++|. +.+..||+.|+++..
T Consensus 272 ~~~~~~P~~~d~D~~lLL~stkpLl~S-~n~sVVmA~aql~y~lAP~--~~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 272 YNEIRTPYVNDPDLKLLLQSTKPLLQS-RNPSVVMAVAQLFYHLAPK--NQVTKIAKALVRLLR-SNREVQYVVLQNIAT 347 (968)
T ss_pred ccccCCCcccCccHHHHHHhccHHHhc-CCcHHHHHHHhHHHhhCCH--HHHHHHHHHHHHHHh-cCCcchhhhHHHHHH
Confidence 13456666777777 6789999999998875332 345667888888775 467999999999999
Q ss_pred HhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcc
Q 040316 300 IAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYE 379 (957)
Q Consensus 300 Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~ 379 (957)
|+...|.+|.+|.+.||.|-.|| .-|+..+|++|..|+|++|+..|++||..|+...|.+|....|++||. |....-+
T Consensus 348 ~s~~~~~lF~P~lKsFfv~ssDp-~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGr-CA~~~~s 425 (968)
T KOG1060|consen 348 ISIKRPTLFEPHLKSFFVRSSDP-TQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGR-CASRIGS 425 (968)
T ss_pred HHhcchhhhhhhhhceEeecCCH-HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHhhCc
Confidence 99999999999999999999999 899999999999999999999999999999999999999999999985 5554444
Q ss_pred cccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCC
Q 040316 380 VIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVE 459 (957)
Q Consensus 380 ~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~ 459 (957)
.. +-|++.|++|++.....+..+.+.+|+.++.+.|..+.+++.++..++ +++..+.+++.++|++|||++
T Consensus 426 v~---~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll------dti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 426 VT---DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL------DTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred hh---hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh------hhhhhhhhhceeeeeehhhhh
Confidence 33 359999999999988889999999999999999998888999988877 256678899999999999999
Q ss_pred CCCC-HHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 460 FSRN-PFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 460 ~i~~-p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
.++. +++++|.+.+ .|..|.++||.++|...+|+|..
T Consensus 497 ~vpri~PDVLR~lak-sFs~E~~evKlQILnL~aKLyl~ 534 (968)
T KOG1060|consen 497 IVPRIAPDVLRKLAK-SFSDEGDEVKLQILNLSAKLYLT 534 (968)
T ss_pred hcchhchHHHHHHHH-hhccccchhhHHHHHhhhhheEe
Confidence 9875 7899999887 69999999999999999999876
No 7
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-53 Score=492.95 Aligned_cols=452 Identities=20% Similarity=0.288 Sum_probs=400.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHH
Q 040316 34 SKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQ 113 (957)
Q Consensus 34 ~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNt 113 (957)
..|+.+.|+.|.+....+|++|++|+|. +|+.|.|||.+|++|+++|++.+.++||++|||++.|+...|+.+++++|+
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa-~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt 90 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIA-YMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNT 90 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHh-cCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhh
Confidence 4588899999977767788999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh--hHH----HH-----------------HHHHHhhhc
Q 040316 114 LRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN--AVR----VC-----------------FKRLVENLE 170 (957)
Q Consensus 114 LkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~--AvR----~~-----------------~~kL~elL~ 170 (957)
|.||+.++||.+|++|+|++++++.+.+.+.+...+.++++|+ .+| .| .+.|++++.
T Consensus 91 ~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 91 FLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS 170 (734)
T ss_pred hhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc
Confidence 9999999999999999999999999999999999999999993 122 11 356888899
Q ss_pred CCChhHHHHHHHHHHHhhhcCCC-CccCchHHHHHHH-h--hcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhc
Q 040316 171 SSEPVILSAVVGVFCELCLKDPR-SYLPLAPEFYKIL-V--DSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRR 246 (957)
Q Consensus 171 D~D~sVv~AAv~vL~EI~~~np~-~~l~Lap~L~~iL-~--~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~ 246 (957)
|+||.|+++|+.++.||...++. ....+.+.+.+.| . +.+++|+||-||+.++.|.|.+++.+..+++.+.+.+++
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh 250 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQH 250 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhcc
Confidence 99999999999999999999985 3444555554443 3 258999999999999999999998889999999999999
Q ss_pred CCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhh---cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCC
Q 040316 247 TEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFL---VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGD 323 (957)
Q Consensus 247 t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL---~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D 323 (957)
.+.+|++.+++.+++.+............++..-| .++.++++|++|++++.|++..|..+..++..||+.++||
T Consensus 251 -~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDP- 328 (734)
T KOG1061|consen 251 -ANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDP- 328 (734)
T ss_pred -CCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCc-
Confidence 66899999999999875544445556666665433 4667799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchH
Q 040316 324 YNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKG 403 (957)
Q Consensus 324 ~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~ 403 (957)
+|||..+|+++..+++..|+.+|+.||..|....|.+|.+++|++|+.++.+ ++ +.+-||++|++++.+..+|+.
T Consensus 329 iYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik--~e---~~~~cv~~lLell~~~~~yvv 403 (734)
T KOG1061|consen 329 IYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIK--AE---QSNDCVSILLELLETKVDYVV 403 (734)
T ss_pred hhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhh--hh---hhhhhHHHHHHHHhhccccee
Confidence 9999999999999999999999999999999999999999999999998875 21 213399999999999999999
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHHHHHHHHhcccccCCCHHH
Q 040316 404 EEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSI 483 (957)
Q Consensus 404 ~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~~iL~~LL~~~~~~es~~V 483 (957)
+|+..+++++++++|...+.++..++. .+++.+.++++.+++||+|||++.++|..++|+.++. .|.+++.+|
T Consensus 404 qE~~vvi~dilRkyP~~~~~vv~~l~~------~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~e-n~~dE~~~V 476 (734)
T KOG1061|consen 404 QEAIVVIRDILRKYPNKYESVVAILCE------NLDSLQEPEAKAALIWILGEYAERIENALELLESFLE-NFKDETAEV 476 (734)
T ss_pred eehhHHHHhhhhcCCCchhhhhhhhcc------cccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHh-hcccchHHH
Confidence 999999999999999988777766543 2456788999999999999999999999999999987 589999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 040316 484 RAVYVQSVFKVLIFCAH 500 (957)
Q Consensus 484 q~~iLtAl~Klf~~~~~ 500 (957)
|..+|+|++|+|.+.+.
T Consensus 477 ql~LLta~ik~Fl~~p~ 493 (734)
T KOG1061|consen 477 QLELLTAAIKLFLKKPT 493 (734)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 99999999999998553
No 8
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.4e-37 Score=365.71 Aligned_cols=455 Identities=18% Similarity=0.214 Sum_probs=361.3
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHH
Q 040316 36 AIEEIRRE-IKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQL 114 (957)
Q Consensus 36 elaEIR~e-L~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtL 114 (957)
++++.+.. +.+.+.+.|.+||+|+|. .|+.|+||+.+|++|++.+.+.+.+.||+.|+|+.+|...+|++++|++|++
T Consensus 19 ~~~~~~sg~l~s~n~~~kidAmK~iIa-~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti 97 (757)
T COG5096 19 SVAALSSGRLESSNDYKKIDAMKKIIA-QMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTI 97 (757)
T ss_pred HHhhhccccccccChHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 55666777 999999999999999998 6778999999999999998899999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh--hHH--------HHH-------------HHHHhhhcC
Q 040316 115 RKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN--AVR--------VCF-------------KRLVENLES 171 (957)
Q Consensus 115 kKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~--AvR--------~~~-------------~kL~elL~D 171 (957)
+||++|+||++||+|||+|+.++.+++...+.+.|+++++|. .|| .+| ..+..++.|
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D 177 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVAD 177 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999993 233 233 134566789
Q ss_pred CChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh----c---CChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHh
Q 040316 172 SEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD----S---KNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFM 244 (957)
Q Consensus 172 ~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~----~---~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL 244 (957)
.||-|+.+|+..+.+|.+.+...| ...++..+.+ + ..+|.++-++..|..+.+..|.....+.+.+....
T Consensus 178 ~dP~Vi~nAl~sl~~i~~e~a~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~ 254 (757)
T COG5096 178 SDPIVIANALASLAEIDPELAHGY---SLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPL 254 (757)
T ss_pred CCchHHHHHHHHHHHhchhhhhhH---HHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchh
Confidence 999999999999999988744433 2223333222 1 24999999999999998887776666667777777
Q ss_pred hcCCcchHHHHHHHHHHhhcCC--cHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCC
Q 040316 245 RRTEAKSLLFECIRTVLSSLSE--YESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDG 322 (957)
Q Consensus 245 ~~t~a~SVLyE~I~~Ii~~l~~--~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~ 322 (957)
++ .+..|+.-+++.++..... ........-.+|..++..+...+.|+.......+....+.++..-...|+...+||
T Consensus 255 ~~-~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~ 333 (757)
T COG5096 255 QH-NNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDD 333 (757)
T ss_pred hh-CcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccch
Confidence 77 5577788888888765321 11233334455556655445789999999999999999999888788877777776
Q ss_pred CHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhh--cChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhc---c
Q 040316 323 DYNIKLESLRLLMSMVSESNVAEISRVLINYALK--SDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVR---I 397 (957)
Q Consensus 323 D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~--sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~---~ 397 (957)
++++..++++++.+++.+|...++.|++.|+.. .+.++.++++++|+..+.+. .+.+.+ |++.+++++. .
T Consensus 334 -i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~-~s~~~~---~I~~~lel~~g~~~ 408 (757)
T COG5096 334 -IYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKA-ESSVND---CISELLELLEGVWI 408 (757)
T ss_pred -HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhh-hhhHHH---HHHHHHHhccchhh
Confidence 999999999999999999999999999999999 89999999999999998863 233445 9999999999 8
Q ss_pred CCcchHHHH-----HHHHH---HHHHhcCcc-hHHHHHHHHHHhcCCcccCCC-chHHHHHHH-----hhhhccCCCCCC
Q 040316 398 PHCQKGEEI-----EHQII---DIAMRVKDV-RPALVHVCRNLLIDPALLGNP-FLHRILSAA-----AWVSGEYVEFSR 462 (957)
Q Consensus 398 ~~~~v~~eI-----~~~L~---dIi~rvp~i-r~~av~~l~~lL~d~~~l~~~-~~~~~l~a~-----aWIlGEY~~~i~ 462 (957)
.+.|+..++ |.+++ ++++.+|+- ..-.++.++.+. + .++-. ..|.++.++ +|++|||++.+.
T Consensus 409 ~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~-e--~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~ 485 (757)
T COG5096 409 RGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALE-E--TLELQSREPRAKSVTDKYLGAWLLGEFSDIIP 485 (757)
T ss_pred ccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHH-H--HhhccccCcHHHHHHhhhhHHHhHHHHHHHHh
Confidence 888888777 66665 667766654 222223322211 1 11111 146677777 999999999887
Q ss_pred CH-HHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 040316 463 NP-FELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHSYLL 504 (957)
Q Consensus 463 ~p-~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~~~~~~~ 504 (957)
+- ++.++.++.. |..++.+||.+|+.+.+|++++++....+
T Consensus 486 r~~~~~l~~~~~~-~~~E~levq~~Il~~svkl~~~~~~~~~~ 527 (757)
T COG5096 486 RLEPELLRIAISN-FVDETLEVQYTILMSSVKLIANSIRKAKQ 527 (757)
T ss_pred hhhHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHhCcHhhhh
Confidence 64 4788877774 78899999999999999999998765433
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-37 Score=351.42 Aligned_cols=408 Identities=22% Similarity=0.309 Sum_probs=350.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHH-hhcCCCccchhhhHHHHHhhcCCCc-----hHHHHHH
Q 040316 38 EEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVE-VMSSPQFFYKKIGYHAVTQSFNDDT-----PVILLIT 111 (957)
Q Consensus 38 aEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVe-lmsS~~~~~KRlGYLaas~~~~~~~-----dlllLat 111 (957)
.+|++.|++.+.+.|.++|+|+|+ .|++|.+++.++++||+ +|.|.+.+.||+-|+|....=..+. +.++|++
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~-~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvc 101 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIA-LMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVC 101 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHH-HHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHH
Confidence 578999999999999999999999 57899999999999999 8999999999999999886433332 4799999
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh--hHH--------HHHH----------HHHh--hh
Q 040316 112 NQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN--AVR--------VCFK----------RLVE--NL 169 (957)
Q Consensus 112 NtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~--AvR--------~~~~----------kL~e--lL 169 (957)
|.+||||+|||+|+||..||+||.+..||+.+.+.|.|+.+|.|. .|| .+|+ .|.+ ++
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLL 181 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999992 333 2222 2322 34
Q ss_pred cCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHh--hcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcC
Q 040316 170 ESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILV--DSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRT 247 (957)
Q Consensus 170 ~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~--~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t 247 (957)
.+.||++.-+|+..|..+.+.+...|+ -.... .+.++-+|..|+.++..-+-..|.+..++++.+.++|+++
T Consensus 182 ~e~DpsCkRNAFi~L~~~D~ErAl~Yl------~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~st 255 (948)
T KOG1058|consen 182 TEQDPSCKRNAFLMLFTTDPERALNYL------LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSST 255 (948)
T ss_pred hccCchhHHHHHHHHHhcCHHHHHHHH------HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcC
Confidence 589999999999999999877665552 12222 2467889999999999999889999999999999999985
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHH
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFL-VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNI 326 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL-~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sI 326 (957)
+.+|.|||.-+++. +++.+.+++.+++++..++ ..+|.|++.+.|..|..+...|-.+++.....|+..|+.||..+
T Consensus 256 -ssaV~fEaa~tlv~-lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldv 333 (948)
T KOG1058|consen 256 -SSAVIFEAAGTLVT-LSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDV 333 (948)
T ss_pred -CchhhhhhcceEEE-ccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccH
Confidence 79999999998877 5777899999999998888 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHhhhc-------ChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCC
Q 040316 327 KLESLRLLMSMVSESNVAEISRVLINYALKS-------DPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPH 399 (957)
Q Consensus 327 R~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~s-------D~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~ 399 (957)
|+++|++.+.+++..|+.+||.-|.+-+.+. ...||..++++|- .|+.+.++.+.. .|.+|++++...+
T Consensus 334 r~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih-~cav~Fp~~aat---vV~~ll~fisD~N 409 (948)
T KOG1058|consen 334 RSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH-ACAVKFPEVAAT---VVSLLLDFISDSN 409 (948)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHH-HHhhcChHHHHH---HHHHHHHHhccCC
Confidence 9999999999999999999999999888764 2479999999995 666655555544 8999999999888
Q ss_pred cchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCH
Q 040316 400 CQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNP 464 (957)
Q Consensus 400 ~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p 464 (957)
...+..++..++.++.++|+.|..++.++.+-+. .+....+...++||+|||++-..+.
T Consensus 410 ~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~------~irS~ki~rgalwi~GeYce~~~~i 468 (948)
T KOG1058|consen 410 EAAASDVLMFVREAIEKFPNLRASIIEKLLETFP------QIRSSKICRGALWILGEYCEGLSEI 468 (948)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhh------hhcccccchhHHHHHHHHHhhhHHH
Confidence 8889999999999999999999999988765442 3456778899999999999855433
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-27 Score=276.54 Aligned_cols=443 Identities=17% Similarity=0.216 Sum_probs=362.8
Q ss_pred HHHHHHHHhcCCChH-HH-HHHHHHHHHHHhcCCCCc-----chhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHH
Q 040316 36 AIEEIRREIKSTDLP-TK-SAALRKLSYLSSLHGADM-----SFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVIL 108 (957)
Q Consensus 36 elaEIR~eL~S~d~~-~K-~~AL~KLIYL~ML~G~Dm-----S~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlll 108 (957)
-++|.| .|+++... .| +.++.||+||.- +|+.. ..+||.+.++++|++..+||++|+++... ..-+|-.+
T Consensus 23 vlqe~r-~fnespvn~r~c~~~lskllyll~-qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikel-s~isedvi 99 (865)
T KOG1078|consen 23 VLQEAR-TFNESPVNPRKCRHILSKLLYLLN-QGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKEL-SKISEDVI 99 (865)
T ss_pred HHHHHH-hhcCCCCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhc-cccchhhh
Confidence 456788 88877654 34 479999999865 69754 56899999999999999999999999854 45577789
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh---------------------hHHHHHHHHHh
Q 040316 109 LITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN---------------------AVRVCFKRLVE 167 (957)
Q Consensus 109 LatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~---------------------AvR~~~~kL~e 167 (957)
++|+++.||.+..++..|+.|||+|+.|....+...+...+.+.+.+. .++.|...+.+
T Consensus 100 ivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqe 179 (865)
T KOG1078|consen 100 IVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQE 179 (865)
T ss_pred hhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999888877777776661 22334456677
Q ss_pred hhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcC
Q 040316 168 NLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRT 247 (957)
Q Consensus 168 lL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t 247 (957)
...+.+..|++.|+.++..|-+++.-.-.+++..+.+ ....+++..+.++++-..+.-.++....-+.+.+..++++
T Consensus 180 a~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~--~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~- 256 (865)
T KOG1078|consen 180 AVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTR--GSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRH- 256 (865)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc--ccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhc-
Confidence 7888888999999999999977654322222222222 2246777777777777776655554444556667777765
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHH
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIK 327 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR 327 (957)
...+|.||+.+.|...-......+.-+++.|+.|+.+..+-+||.|++.|++++..||+++.-.-..+-...+|.+.+|.
T Consensus 257 K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIa 336 (865)
T KOG1078|consen 257 KSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIA 336 (865)
T ss_pred hhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchh
Confidence 67899999999998753334555566999999999999999999999999999999999999988888889999999999
Q ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcc-hHHHH
Q 040316 328 LESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQ-KGEEI 406 (957)
Q Consensus 328 ~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~-v~~eI 406 (957)
..|+..|++-.+++|+..+++.+-.++.+.+.+|+.-++.+|..+|.++ .....-+++.|..+++..|.+ ....+
T Consensus 337 t~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f----p~k~~~~m~FL~~~Lr~eGg~e~K~ai 412 (865)
T KOG1078|consen 337 TLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF----PRKHTVMMNFLSNMLREEGGFEFKRAI 412 (865)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc----cHHHHHHHHHHHHHHHhccCchHHHHH
Confidence 9999999999999999999999999999999999999999999999862 223445788888888877654 67788
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHHHHHHHHhcccccCCCHHHHHH
Q 040316 407 EHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAV 486 (957)
Q Consensus 407 ~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~~iL~~LL~~~~~~es~~Vq~~ 486 (957)
++.+.+++.-+|+.++.....+|+++.|+. ...+.--+..++|.-|....+|...++. +.++..++...||+.
T Consensus 413 vd~Ii~iie~~pdsKe~~L~~LCefIEDce------~~~i~~rILhlLG~EgP~a~~Pskyir~-iyNRviLEn~ivRaa 485 (865)
T KOG1078|consen 413 VDAIIDIIEENPDSKERGLEHLCEFIEDCE------FTQIAVRILHLLGKEGPKAPNPSKYIRF-IYNRVILENAIVRAA 485 (865)
T ss_pred HHHHHHHHHhCcchhhHHHHHHHHHHHhcc------chHHHHHHHHHHhccCCCCCCcchhhHH-HhhhhhhhhhhhHHH
Confidence 999999999999999999999999998753 3455666778999999999999999986 567999999999999
Q ss_pred HHHHHHHHH
Q 040316 487 YVQSVFKVL 495 (957)
Q Consensus 487 iLtAl~Klf 495 (957)
.++|++|+.
T Consensus 486 Av~alaKfg 494 (865)
T KOG1078|consen 486 AVSALAKFG 494 (865)
T ss_pred HHHHHHHHh
Confidence 999999996
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.95 E-value=4.8e-25 Score=248.47 Aligned_cols=446 Identities=16% Similarity=0.153 Sum_probs=354.9
Q ss_pred HHHHHHHhcCCChHHH--HHHHHHHHHHHhcCCCCc-----chhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHH
Q 040316 37 IEEIRREIKSTDLPTK--SAALRKLSYLSSLHGADM-----SFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILL 109 (957)
Q Consensus 37 laEIR~eL~S~d~~~K--~~AL~KLIYL~ML~G~Dm-----S~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllL 109 (957)
.+++++.|++.....| +.++-+|.||.. .|.-. .-+||.+.+++++++...|+.+|+++-.+- .=+|-.+|
T Consensus 24 ~qd~~~sfn~Spvs~r~~r~lls~l~yll~-tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS-~~tedvlm 101 (898)
T COG5240 24 LQDMNESFNKSPVSTRSARKLLSNLFYLLS-TGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELS-KLTEDVLM 101 (898)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-hcchhhhH
Confidence 4678889998766533 578999999866 48854 568999999999999999999999998654 34666889
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHhhccCCchhhHhhhHHHHHHhhhh--hhHH-------------------HHHHHHHh
Q 040316 110 ITNQLRKDLNSSNQ-FEVSLALECLSRIGNVDLARDLTPEVFTLLSS--NAVR-------------------VCFKRLVE 167 (957)
Q Consensus 110 atNtLkKDL~s~Np-~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~--~AvR-------------------~~~~kL~e 167 (957)
+||+|.||++...| .++..|+|+|-.+...+++.+....+....-+ .|++ .|.....+
T Consensus 102 ~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qe 181 (898)
T COG5240 102 GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQE 181 (898)
T ss_pred HHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHH
Confidence 99999999999888 89999999999999988876555444444333 1221 11111111
Q ss_pred hhc----------------CCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChH
Q 040316 168 NLE----------------SSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPR 231 (957)
Q Consensus 168 lL~----------------D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~ 231 (957)
... ..++.-...|+.+|..+-+.+.-..++++.+|..-+ +..|...-+.++|....+...+++
T Consensus 182 av~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q 260 (898)
T COG5240 182 AVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQ 260 (898)
T ss_pred HHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChH
Confidence 110 245667788888888887665443333333333222 234556667777777777777787
Q ss_pred HHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcC-C-cHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHh
Q 040316 232 LAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLS-E-YESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVL 309 (957)
Q Consensus 232 L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~-~-~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~ 309 (957)
+...+.+.|...++. ...+|.+|+.+.++..-. + .++.++.+++.|+.||.+...-+||.|++.|+.|+..+|+.+.
T Consensus 261 ~~~q~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 261 ALLQLRPFLNSWLSD-KFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 777777777777755 668999999999987421 1 4678889999999999999999999999999999999999998
Q ss_pred hhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHH
Q 040316 310 ENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYAS 389 (957)
Q Consensus 310 ~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvd 389 (957)
-+-..+-.+++|.+.+|..-|+..|.+-.|++|+..+++.+-.++.+..+.|+.-+|.+|-.+|-.+ ......|++
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F----p~k~~s~l~ 415 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF----PSKKLSYLD 415 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC----cHHHHHHHH
Confidence 8888888889999999999999999999999999999999999999999999999999998888652 344566999
Q ss_pred HHHHhhccCCcc-hHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHHHHH
Q 040316 390 LLGEMVRIPHCQ-KGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELM 468 (957)
Q Consensus 390 vLl~Ll~~~~~~-v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~~iL 468 (957)
.|...+...|++ +...+++.+.+++..+|+.++.++..+|.++.|+ ..+++..-+.-|+|+-|...++|...+
T Consensus 416 FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDc------ey~~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 416 FLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDC------EYHQITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhc------chhHHHHHHHHHhcccCCCCCCcchHH
Confidence 999877766654 7788899999999999999999999999999875 357788888889999999999999999
Q ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 469 EALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 469 ~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
+.+ .+|...+...||+..++|+.|+...
T Consensus 490 rhI-yNR~iLEN~ivRsaAv~aLskf~ln 517 (898)
T COG5240 490 RHI-YNRLILENNIVRSAAVQALSKFALN 517 (898)
T ss_pred HHH-HHHHHHhhhHHHHHHHHHHHHhccC
Confidence 975 4689999999999999999999654
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.23 E-value=2e-09 Score=127.22 Aligned_cols=389 Identities=18% Similarity=0.165 Sum_probs=278.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHH-HH
Q 040316 34 SKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMS-FAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILL-IT 111 (957)
Q Consensus 34 ~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS-~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllL-at 111 (957)
--.+.-+++.|.+++...+.-|+.-+..+. ..++- .....|.+++.+++...||-+.+++..++..+++..-- .+
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~ 154 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELI 154 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 336677999999999999999998777632 44543 45777778999999999999999999999888887655 58
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhccC-CchhhHhhhHHHHHHhhh----h--h-----hH----------------HHHHH
Q 040316 112 NQLRKDLNSSNQFEVSLALECLSRI-GNVDLARDLTPEVFTLLS----S--N-----AV----------------RVCFK 163 (957)
Q Consensus 112 NtLkKDL~s~Np~vr~LALr~Ls~I-~tpeLa~~L~~~V~klL~----~--~-----Av----------------R~~~~ 163 (957)
..+.+-|.++++.+++.|+..+..+ ..++....+.+.+.+.|. . + .+ ..+++
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~ 234 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIE 234 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHH
Confidence 9999999999999999999999999 777654455555544443 2 1 11 12455
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHH
Q 040316 164 RLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEF 243 (957)
Q Consensus 164 kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~l 243 (957)
.+..+|.+.+++|+..|+.++..+....+ .....++.+.++|. +.++=.+.-.|+.|..+....+..... .......
T Consensus 235 ~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~~-~~~~~~~ 311 (526)
T PF01602_consen 235 PLLNLLQSSSPSVVYEAIRLIIKLSPSPE-LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVFN-QSLILFF 311 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSHH-HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHGT-HHHHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhcchH-HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhhh-hhhhhhe
Confidence 66677788999999999999998876544 33345667777776 455547777788888887776333221 2233345
Q ss_pred hhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCC
Q 040316 244 MRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFL-VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDG 322 (957)
Q Consensus 244 L~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL-~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~ 322 (957)
+......+|-..++.++..... ++-+..+++.|..++ ...|+.++--++..+..++..++.....+.+.++..+...
T Consensus 312 l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~ 389 (526)
T PF01602_consen 312 LLYDDDPSIRKKALDLLYKLAN--ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS 389 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT
T ss_pred ecCCCChhHHHHHHHHHhhccc--ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc
Confidence 5545667888888887776433 345667889999999 5568899999999999999999988899999999999987
Q ss_pred CHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHhhh-cChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCC
Q 040316 323 DYNIKLESLRLLMSMVS--ESNVAEISRVLINYALK-SDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPH 399 (957)
Q Consensus 323 D~sIR~~ALeLL~~Lvn--e~Nv~~IV~ELl~yl~~-sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~ 399 (957)
+.++...++..+..++. ++.-..++..|.+++.+ .++.++..++--||..+... .. .....-++..+.+......
T Consensus 390 ~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~-~~-~~~~~~~~~~l~~~~~~~~ 467 (526)
T PF01602_consen 390 GDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELI-EN-TESAPDILRSLIENFIEES 467 (526)
T ss_dssp GGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH-TT-TTHHHHHHHHHHHHHTTSH
T ss_pred cccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcc-cc-cccHHHHHHHHHHhhcccc
Confidence 78888888888877753 45567799999999987 45677777777777665542 11 0001225555555544445
Q ss_pred cchHHHHHHHHHHHHHhcC--cchHHHHHHHHHHh
Q 040316 400 CQKGEEIEHQIIDIAMRVK--DVRPALVHVCRNLL 432 (957)
Q Consensus 400 ~~v~~eI~~~L~dIi~rvp--~ir~~av~~l~~lL 432 (957)
..+...+...+..+..+.| +.++.+...+..+.
T Consensus 468 ~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~ 502 (526)
T PF01602_consen 468 PEVKLQILTALAKLFKRNPENEVQNEILQFLLSLA 502 (526)
T ss_dssp HHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHh
Confidence 5567777888888888887 34445554444333
No 13
>PTZ00429 beta-adaptin; Provisional
Probab=98.81 E-value=3.9e-06 Score=103.49 Aligned_cols=369 Identities=11% Similarity=0.110 Sum_probs=221.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHH--HHHH
Q 040316 36 AIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMS-FAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVIL--LITN 112 (957)
Q Consensus 36 elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS-~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlll--LatN 112 (957)
.+.-+++.+.+++...|.-||+-|..+ ...++- .....+.+++..++...||-+-+++..+++.++++.. =.++
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~I---r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~ 182 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCI---RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKK 182 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHH
Confidence 356688888999999999999866652 233333 3445556689999999999999999999888877542 2346
Q ss_pred HHHHHhcCCCHHHHHHHHHhhccCCc--hhhHhhhHHHHHHhhhh-----h--------h-----------HHHHHHHHH
Q 040316 113 QLRKDLNSSNQFEVSLALECLSRIGN--VDLARDLTPEVFTLLSS-----N--------A-----------VRVCFKRLV 166 (957)
Q Consensus 113 tLkKDL~s~Np~vr~LALr~Ls~I~t--peLa~~L~~~V~klL~~-----~--------A-----------vR~~~~kL~ 166 (957)
.+++=|.++|+.+++.|+.+|..|.. |+......+.+.+++.. + . ...++..+.
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~ 262 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVL 262 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 67776789999999999999998863 22222223333333332 0 0 112445667
Q ss_pred hhhcCCChhHHHHHHHHHHHhhhcC-CCCc----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHH
Q 040316 167 ENLESSEPVILSAVVGVFCELCLKD-PRSY----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPIC 241 (957)
Q Consensus 167 elL~D~D~sVv~AAv~vL~EI~~~n-p~~~----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~ 241 (957)
.+|...+++|+.+|+.+++.+.... +... ..+.+.++.++ +.++=.|-.+|+-+..+....|.+...-++.+.
T Consensus 263 ~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~--ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff 340 (746)
T PTZ00429 263 PRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS--RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFY 340 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh--CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhh
Confidence 7788899999999999999887542 2211 11222233332 223334444444444443344544333222221
Q ss_pred HHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccC
Q 040316 242 EFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSD 321 (957)
Q Consensus 242 ~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D 321 (957)
-. .+...-|-.+.+.++..... ++-+..+++-|..++.+.|.+++--+++++..++.+.|.......+.++..+++
T Consensus 341 ~~--~~Dp~yIK~~KLeIL~~Lan--e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 341 VR--YSDPPFVKLEKLRLLLKLVT--PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDR 416 (746)
T ss_pred cc--cCCcHHHHHHHHHHHHHHcC--cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC
Confidence 11 11222344555554444322 233455778888888888899999999999999998998888888888888876
Q ss_pred CCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHh--hh-cChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccC
Q 040316 322 GDYNIKLESLRLLMSMVSESNVAEISRVLINYA--LK-SDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIP 398 (957)
Q Consensus 322 ~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl--~~-sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~ 398 (957)
... +...++..+..+....--..++..|..++ .. .+++-+.-+|--||..|.. +++..-++..+++=....
T Consensus 417 ~~~-~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~-----I~~a~~~L~~~i~~f~~E 490 (746)
T PTZ00429 417 RPE-LLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF-----IENGKDIIQRFIDTIMEH 490 (746)
T ss_pred Cch-hHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhh-----HhhHHHHHHHHHhhhccC
Confidence 533 34466777666644332234666666654 12 3456666667777776653 223222332222211223
Q ss_pred CcchHHHHHHHHHHHHHhcCc
Q 040316 399 HCQKGEEIEHQIIDIAMRVKD 419 (957)
Q Consensus 399 ~~~v~~eI~~~L~dIi~rvp~ 419 (957)
+..+.-.++.....+..+.|.
T Consensus 491 ~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 491 EQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred CHHHHHHHHHHHHHHHhcCcH
Confidence 333445555666666666663
No 14
>PRK09687 putative lyase; Provisional
Probab=98.44 E-value=2.8e-05 Score=86.08 Aligned_cols=240 Identities=14% Similarity=0.135 Sum_probs=160.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 040316 109 LITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELC 188 (957)
Q Consensus 109 LatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~ 188 (957)
+.++.|.+=|.|+|..+|-.|+..|..+..++... .+..++.|.|+.|-.+|+.+|.++.
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~--------------------~l~~ll~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFR--------------------LAIELCSSKNPIERDIGADILSQLG 82 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHH--------------------HHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 34456666678888888888888888888755543 3445566778888888888888875
Q ss_pred hcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcH
Q 040316 189 LKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYE 268 (957)
Q Consensus 189 ~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~ 268 (957)
..... -....|.|..++.+..++...-..+..|+.++...+.....+++.+...+.. .+.-|-+.++..+-. +.+ +
T Consensus 83 ~~~~~-~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D-~~~~VR~~a~~aLg~-~~~-~ 158 (280)
T PRK09687 83 MAKRC-QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD-KSTNVRFAVAFALSV-IND-E 158 (280)
T ss_pred CCccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC-CCHHHHHHHHHHHhc-cCC-H
Confidence 42210 0123455555555566777777777777777654332222334444444443 345677777776543 222 2
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHH
Q 040316 269 SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISR 348 (957)
Q Consensus 269 ~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ 348 (957)
.++..|..+|.++++.+|+-+..+|..+....|.++ ..++..|+|+|..||..|+.-|-.+-++ ..+.
T Consensus 159 ----~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~----~~L~~~L~D~~~~VR~~A~~aLg~~~~~----~av~ 226 (280)
T PRK09687 159 ----AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIR----EAFVAMLQDKNEEIRIEAIIGLALRKDK----RVLS 226 (280)
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHH----HHHHHHhcCCChHHHHHHHHHHHccCCh----hHHH
Confidence 367788888899999999999999999954566554 3466778999999999999999887664 5666
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhc
Q 040316 349 VLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVR 396 (957)
Q Consensus 349 ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~ 396 (957)
-|++++.+.+ ++..++.+++.+... -.+..|..++.
T Consensus 227 ~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~ 262 (280)
T PRK09687 227 VLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHh
Confidence 6777766544 677788888765431 26666766665
No 15
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00011 Score=88.73 Aligned_cols=280 Identities=16% Similarity=0.197 Sum_probs=169.4
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHH
Q 040316 164 RLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEF 243 (957)
Q Consensus 164 kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~l 243 (957)
-|+.=|...+.-||+.|+++++.|+. |+....++|..-++|.. .+|+..=|.+-...++.+..|.+.+.++.....+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s--~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~l 187 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICS--PEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKL 187 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCC--HHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 45566778899999999999999984 55666778888888876 8999988888888888888999999888888888
Q ss_pred hhcCCcchHHHHHHHHHHhhcCCc-------HHHHHHHHHHHHHhhcC-----------CCchHHHHHHHHHHHHhhhCh
Q 040316 244 MRRTEAKSLLFECIRTVLSSLSEY-------ESAVKLAVVKVREFLVD-----------DDPNLKYLGLQALSIIAPKHL 305 (957)
Q Consensus 244 L~~t~a~SVLyE~I~~Ii~~l~~~-------~~li~l~v~~L~~fL~s-----------sDpNlrYvaL~~L~~Iv~~~p 305 (957)
|.. ....|+..++..+......+ ..+....|.+|+.+..+ +||=++.-.|+.|..+.+.++
T Consensus 188 L~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 188 LCE-KHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred Hhh-cCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 865 44666666666555432221 12334455555554421 455566666666555555433
Q ss_pred H-------------------------HHhhhhHhhccc-----------------ccCCCHHHHHHHHHHHhhhcCccc-
Q 040316 306 W-------------------------AVLENKDFVIKS-----------------LSDGDYNIKLESLRLLMSMVSESN- 342 (957)
Q Consensus 306 ~-------------------------~v~~h~~~Il~c-----------------L~D~D~sIR~~ALeLL~~Lvne~N- 342 (957)
+ ++-+.+.+|++. |..+|..||.-||+.|...++.+-
T Consensus 267 daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~ 346 (866)
T KOG1062|consen 267 DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT 346 (866)
T ss_pred cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH
Confidence 1 223334444432 334455555555555555554431
Q ss_pred -HHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhc-Ccc
Q 040316 343 -VAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRV-KDV 420 (957)
Q Consensus 343 -v~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rv-p~i 420 (957)
++.==..+++.+.+.|..+++++..-...+.- ..+-.-.++-|++++.....++..++...+..++.++ |+-
T Consensus 347 avqrHr~tIleCL~DpD~SIkrralELs~~lvn------~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k 420 (866)
T KOG1062|consen 347 AVQRHRSTILECLKDPDVSIKRRALELSYALVN------ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDK 420 (866)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc
Confidence 11122345566677788888877654443321 2233446677777777777777778888888877765 443
Q ss_pred hHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccC
Q 040316 421 RPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEY 457 (957)
Q Consensus 421 r~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY 457 (957)
|=+ +..+.+.+.. .++.....+....+-++++=
T Consensus 421 ~W~-idtml~Vl~~---aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 421 RWH-IDTMLKVLKT---AGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred hhH-HHHHHHHHHh---cccccchhhHHHHHHHHhcC
Confidence 333 3344444421 12223344555555555543
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.38 E-value=9.1e-05 Score=94.23 Aligned_cols=273 Identities=15% Similarity=0.078 Sum_probs=187.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhh
Q 040316 110 ITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCL 189 (957)
Q Consensus 110 atNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~ 189 (957)
.++.|..-|.|+++.+|-.|+..|+.+..++.. +.|...|.|+|+.|-.+|+..|.++..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~--------------------~~L~~aL~D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFG--------------------PALVAALGDGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHH--------------------HHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 346677778888888888888888888765533 346667789999999999999988854
Q ss_pred cCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHH
Q 040316 190 KDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYES 269 (957)
Q Consensus 190 ~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~ 269 (957)
.-+ -.+.+...|. ..+++.....++.|..+...++. .+...+.. ....|-.+++..+... ...
T Consensus 682 ~~~-----~~~~L~~~L~-~~d~~VR~~A~~aL~~~~~~~~~-------~l~~~L~D-~d~~VR~~Av~aL~~~-~~~-- 744 (897)
T PRK13800 682 VLP-----PAPALRDHLG-SPDPVVRAAALDVLRALRAGDAA-------LFAAALGD-PDHRVRIEAVRALVSV-DDV-- 744 (897)
T ss_pred ccC-----chHHHHHHhc-CCCHHHHHHHHHHHHhhccCCHH-------HHHHHhcC-CCHHHHHHHHHHHhcc-cCc--
Confidence 322 1345556665 48889999999988876544332 22334443 5567888888876652 221
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHH
Q 040316 270 AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRV 349 (957)
Q Consensus 270 li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~E 349 (957)
..|..++.+.++.+|..+...|..+....+.. ...+..+++|+|+.||..|+..|-.+.++.. ++..
T Consensus 745 ------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~---~~~~ 811 (897)
T PRK13800 745 ------ESVAGAATDENREVRIAVAKGLATLGAGGAPA----GDAVRALTGDPDPLVRAAALAALAELGCPPD---DVAA 811 (897)
T ss_pred ------HHHHHHhcCCCHHHHHHHHHHHHHhccccchh----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcch---hHHH
Confidence 23456788999999999999999887655433 2345577899999999999999988876643 3345
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 040316 350 LINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCR 429 (957)
Q Consensus 350 Ll~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~ 429 (957)
|+..+.+.|..+|..++.+++.+.. +. .+..|+.++......+..+.+..|..+ + ..+.++..+.
T Consensus 812 l~~aL~d~d~~VR~~Aa~aL~~l~~-------~~---a~~~L~~~L~D~~~~VR~~A~~aL~~~----~-~~~~a~~~L~ 876 (897)
T PRK13800 812 ATAALRASAWQVRQGAARALAGAAA-------DV---AVPALVEALTDPHLDVRKAAVLALTRW----P-GDPAARDALT 876 (897)
T ss_pred HHHHhcCCChHHHHHHHHHHHhccc-------cc---hHHHHHHHhcCCCHHHHHHHHHHHhcc----C-CCHHHHHHHH
Confidence 7777888888899999998876532 12 678888888877766776666666553 1 1223444454
Q ss_pred HHhcCCcccCCCchHHHHHHHhhhh
Q 040316 430 NLLIDPALLGNPFLHRILSAAAWVS 454 (957)
Q Consensus 430 ~lL~d~~~l~~~~~~~~l~a~aWIl 454 (957)
..+.|. ...+.+.++.-+
T Consensus 877 ~al~D~-------d~~Vr~~A~~aL 894 (897)
T PRK13800 877 TALTDS-------DADVRAYARRAL 894 (897)
T ss_pred HHHhCC-------CHHHHHHHHHHH
Confidence 555542 345666655544
No 17
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00033 Score=83.71 Aligned_cols=331 Identities=15% Similarity=0.070 Sum_probs=227.7
Q ss_pred HHhhhhHHHHHHHHhhcChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccc
Q 040316 9 TLFQRDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFY 88 (957)
Q Consensus 9 ~~f~rsL~dfIr~IR~~k~~E~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~ 88 (957)
..|.||+++-..+.++ ....++..+.+|+++...+......++.....+| .+. ++..+|..++|+..+.......
T Consensus 17 ~dlikgir~~~~~e~~---fis~~l~e~r~E~k~~d~~~k~~a~~kl~yl~ml-g~d-~swa~f~iveVmsssk~~~kri 91 (877)
T KOG1059|consen 17 KDLIKGIRSHKEDEEK---FISQCLEEIRQELKSDDLNVKSNAVLKLTYLEML-GVD-MSWAAFHIVEVMSSSKFQQKRI 91 (877)
T ss_pred HHHHHHHHHhcccHHH---HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH-cch-HHHHhhhhhhhhhhhhhHHHHH
Confidence 4577888888888875 7889999999999999998877766655555555 677 8999999999999999999999
Q ss_pred hhhhHHHHHhhcCCCchHHHHHHHHHH--------------------------------HHhcCCCHHHHHHHHHhhccC
Q 040316 89 KKIGYHAVTQSFNDDTPVILLITNQLR--------------------------------KDLNSSNQFEVSLALECLSRI 136 (957)
Q Consensus 89 KRlGYLaas~~~~~~~dlllLatNtLk--------------------------------KDL~s~Np~vr~LALr~Ls~I 136 (957)
.+++|...-+.+.....+++..+|-.. .=|+|+-||+|--|+-.|=.+
T Consensus 92 gylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykv 171 (877)
T KOG1059|consen 92 GYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKV 171 (877)
T ss_pred hHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 999999887777765555544444333 334578899999888888775
Q ss_pred C--chhhHhhhHHHHHHhhhhh-------hHHH--------------HHHHHHhhhc-CCChhHHHHHHHHHHHhhhcCC
Q 040316 137 G--NVDLARDLTPEVFTLLSSN-------AVRV--------------CFKRLVENLE-SSEPVILSAVVGVFCELCLKDP 192 (957)
Q Consensus 137 ~--tpeLa~~L~~~V~klL~~~-------AvR~--------------~~~kL~elL~-D~D~sVv~AAv~vL~EI~~~np 192 (957)
. =|+-.+.-.|-+...|.++ ||-. ..|-+..+|- ..|-=|+.-.+.+|..+.+-.|
T Consensus 172 FLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 172 FLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred HHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCc
Confidence 4 4888888889988888872 3321 1356777765 4667788888999999998888
Q ss_pred CCccCchHHHHHHHhhcCChHHHHHHHHHHHhh-----ccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCc
Q 040316 193 RSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKL-----ATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEY 267 (957)
Q Consensus 193 ~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l-----~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~ 267 (957)
.+=.+++|.+..++.....-=+.-.+++..-.- .+.......-....|..++.. +..-+-|=...++-..+..+
T Consensus 252 RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fied-sDqNLKYlgLlam~KI~ktH 330 (877)
T KOG1059|consen 252 RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIED-SDQNLKYLGLLAMSKILKTH 330 (877)
T ss_pred hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhc-CCccHHHHHHHHHHHHhhhC
Confidence 877788888877775422111111111111111 011122222333444444433 22334444444444445667
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC--hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHH
Q 040316 268 ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKH--LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAE 345 (957)
Q Consensus 268 ~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~--p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~ 345 (957)
+..++.--+.+.+.|.+.|++||.=||..+.-|+... ..+|+.-..++. ...+...|-.-|.-+..||..+|.+.
T Consensus 331 p~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~---~ae~t~yrdell~~II~iCS~snY~~ 407 (877)
T KOG1059|consen 331 PKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVE---KAEGTNYRDELLTRIISICSQSNYQY 407 (877)
T ss_pred HHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHhhhhhhhh
Confidence 7777666666777889999999999999999998754 244444333332 22235789999999999999999988
Q ss_pred HHH
Q 040316 346 ISR 348 (957)
Q Consensus 346 IV~ 348 (957)
|.+
T Consensus 408 Itd 410 (877)
T KOG1059|consen 408 ITD 410 (877)
T ss_pred hhh
Confidence 864
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.17 E-value=0.016 Score=78.00 Aligned_cols=321 Identities=10% Similarity=0.050 Sum_probs=205.1
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhhcCCCCcc-----CchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh----
Q 040316 164 RLVENLESSEPVILSAVVGVFCELCLKDPRSYL-----PLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK---- 234 (957)
Q Consensus 164 kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l-----~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~---- 234 (957)
-|..+|...+..+...++..|..++..+.+.+. ..+|.|+++|.. .++=.|...+..|+.++..+++...
T Consensus 408 ~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 408 VLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-SSEQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466677777789999999999999977655432 357889999986 4666677777778777765554322
Q ss_pred -HHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHH---HHH--HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC-hHH
Q 040316 235 -RVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYES---AVK--LAVVKVREFLVDDDPNLKYLGLQALSIIAPKH-LWA 307 (957)
Q Consensus 235 -kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~---li~--l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~-p~~ 307 (957)
..+++|.++|++ ....+.-+|+-++.+.....+. .+. -++..|..+|.+.++..|-.++.+|..++... +..
T Consensus 487 aGaIP~LV~LL~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 487 AGGIPPLVQLLET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred CCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence 356889999976 5578888888877764332222 231 36778888999999999999999999997643 333
Q ss_pred HhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHH----------HHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhh
Q 040316 308 VLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVA----------EISRVLINYALKSDPEFCNQILGSILSTCCRNL 377 (957)
Q Consensus 308 v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~----------~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~ 377 (957)
+ ..+...|..+|..++..+|+.|-.+++-.... ..+..|.+.+...+...++++...|..+|.-+
T Consensus 566 I----~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~- 640 (2102)
T PLN03200 566 I----SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR- 640 (2102)
T ss_pred H----HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-
Confidence 3 33445567777889999999887665422221 35677888888888999999999998887632
Q ss_pred ccccc--chHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCc------chHHHHHHHHHHhcCCcccCCCchHHHHHH
Q 040316 378 YEVIV--DFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKD------VRPALVHVCRNLLIDPALLGNPFLHRILSA 449 (957)
Q Consensus 378 y~~~~--dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~------ir~~av~~l~~lL~d~~~l~~~~~~~~l~a 449 (957)
..... -..=-+.-|+.++...+..+..+....|.++...... ++..++..++++|.+.. ......++.+
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d---~~v~e~Al~A 717 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS---IEVAEQAVCA 717 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC---hHHHHHHHHH
Confidence 11100 0112356678888888777888888888888752221 22335566777775421 1112333444
Q ss_pred HhhhhccCCCCC-----CCHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhh
Q 040316 450 AAWVSGEYVEFS-----RNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCA 499 (957)
Q Consensus 450 ~aWIlGEY~~~i-----~~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~~ 499 (957)
.+-++. .++.. .+....+-.+++ .-++.+|-....|+..+....+
T Consensus 718 LanLl~-~~e~~~ei~~~~~I~~Lv~lLr----~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 718 LANLLS-DPEVAAEALAEDIILPLTRVLR----EGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHc-CchHHHHHHhcCcHHHHHHHHH----hCChHHHHHHHHHHHHHHhCCC
Confidence 333332 22211 111122222333 3467788888888777765543
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.02 E-value=0.0012 Score=84.26 Aligned_cols=274 Identities=12% Similarity=0.065 Sum_probs=172.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHH
Q 040316 36 AIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLR 115 (957)
Q Consensus 36 elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLk 115 (957)
.+..+...|.+++...|..|+.-|-.+ |.+ .....+++++..++...|+..--++..+....+.. ..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~----~~~--~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-----~~L~ 690 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTET----TPP--GFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-----PALR 690 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhh----cch--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-----HHHH
Confidence 456677778888888888877655542 221 13445566777777666664433444332211111 1222
Q ss_pred HHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc
Q 040316 116 KDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY 195 (957)
Q Consensus 116 KDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~ 195 (957)
.=|.++++.+|..|+..|+.+...+. ..|...|.|+|+.|-.+|+..|-.+..
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~~~~---------------------~~l~~~L~D~d~~VR~~Av~aL~~~~~------ 743 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRAGDA---------------------ALFAAALGDPDHRVRIEAVRALVSVDD------ 743 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhccCCH---------------------HHHHHHhcCCCHHHHHHHHHHHhcccC------
Confidence 33456788888888888887653221 123456788899998888888877621
Q ss_pred cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHH
Q 040316 196 LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAV 275 (957)
Q Consensus 196 l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v 275 (957)
.+.+...| +..+++......+.|..+...++.. .+.|..+++. ....|-..++..+-.... .+. ++
T Consensus 744 ---~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D-~d~~VR~aA~~aLg~~g~-~~~----~~ 809 (897)
T PRK13800 744 ---VESVAGAA-TDENREVRIAVAKGLATLGAGGAPA----GDAVRALTGD-PDPLVRAAALAALAELGC-PPD----DV 809 (897)
T ss_pred ---cHHHHHHh-cCCCHHHHHHHHHHHHHhccccchh----HHHHHHHhcC-CCHHHHHHHHHHHHhcCC-cch----hH
Confidence 12233333 4478888888888887776543321 3344455544 446666667666554322 122 22
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhh
Q 040316 276 VKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYAL 355 (957)
Q Consensus 276 ~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~ 355 (957)
..|...|.+.++.+|+.++.+|..+.. +.. ...++.+|+|+|..||+.|+..|-.+-... ..+..|..-+.
T Consensus 810 ~~l~~aL~d~d~~VR~~Aa~aL~~l~~--~~a----~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~---~a~~~L~~al~ 880 (897)
T PRK13800 810 AAATAALRASAWQVRQGAARALAGAAA--DVA----VPALVEALTDPHLDVRKAAVLALTRWPGDP---AARDALTTALT 880 (897)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccc--cch----HHHHHHHhcCCCHHHHHHHHHHHhccCCCH---HHHHHHHHHHh
Confidence 446677788899999999999988753 222 366778899999999999999998863222 34455556666
Q ss_pred hcChHHHHHHHHHHH
Q 040316 356 KSDPEFCNQILGSIL 370 (957)
Q Consensus 356 ~sD~~~r~elI~aI~ 370 (957)
+.|.++|.+++.++.
T Consensus 881 D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 881 DSDADVRAYARRALA 895 (897)
T ss_pred CCCHHHHHHHHHHHh
Confidence 788899998888774
No 20
>PRK09687 putative lyase; Provisional
Probab=97.96 E-value=0.0017 Score=72.09 Aligned_cols=254 Identities=14% Similarity=0.043 Sum_probs=168.5
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHH
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICE 242 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~ 242 (957)
+.|.+.|.|.|..|-.+|+..|.++.. +. ..+.+.. |.++.++....-.+..|+.+...... ....++.|..
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~--~~----~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~ 97 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG--QD----VFRLAIE-LCSSKNPIERDIGADILSQLGMAKRC-QDNVFNILNN 97 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc--ch----HHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHH
Confidence 457888999999999999999987753 22 2334444 45567888888888888887653211 2345666666
Q ss_pred HhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCC
Q 040316 243 FMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDG 322 (957)
Q Consensus 243 lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~ 322 (957)
++.+.....|-.+++..+-+...........++..+...+.++++.+|+.+..+|..+- ++. -+..++.+|+|+
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~~----ai~~L~~~L~d~ 171 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DEA----AIPLLINLLKDP 171 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CHH----HHHHHHHHhcCC
Confidence 65554556677788777644322111112345667777788889999999999997764 333 346778889999
Q ss_pred CHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcch
Q 040316 323 DYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQK 402 (957)
Q Consensus 323 D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v 402 (957)
|..||..|..-|-.+. ..-..++..|+.-+.+.+.++|..++.+++.+-. .-.+..|++.+.... +
T Consensus 172 ~~~VR~~A~~aLg~~~--~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~ 237 (280)
T PRK09687 172 NGDVRNWAAFALNSNK--YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--V 237 (280)
T ss_pred CHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--h
Confidence 9999999999998883 2234677888888889999999999999875421 126778888777533 3
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhcc
Q 040316 403 GEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGE 456 (957)
Q Consensus 403 ~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGE 456 (957)
..+++..+-++ .+ +.++..+..++.. .....+...+.|.|-+
T Consensus 238 ~~~a~~ALg~i----g~--~~a~p~L~~l~~~------~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 238 GDLIIEAAGEL----GD--KTLLPVLDTLLYK------FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHHhc----CC--HhHHHHHHHHHhh------CCChhHHHHHHHHHhc
Confidence 33333333322 22 2455555555531 1245667777776643
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.95 E-value=0.0073 Score=72.38 Aligned_cols=315 Identities=16% Similarity=0.215 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhcCCCCcchh-HHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHH-----HHHHHHHHHhcCCCHHHH
Q 040316 53 SAALRKLSYLSSLHGADMSFA-AFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVIL-----LITNQLRKDLNSSNQFEV 126 (957)
Q Consensus 53 ~~AL~KLIYL~ML~G~DmS~~-~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlll-----LatNtLkKDL~s~Np~vr 126 (957)
+..+.+++- .. .|.++... ...+...+.+++...|+++.-.+..+.+.+...+- -+...+..=+.+++..+.
T Consensus 59 ~~iL~~~l~-~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va 136 (503)
T PF10508_consen 59 CDILKRLLS-AL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVA 136 (503)
T ss_pred HHHHHHHHh-cc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHH
Confidence 344444443 22 45564433 34444567777777777776666655543322111 112334444567777777
Q ss_pred HHHHHhhccCCc-hhhHhhh-----HHHHHHhhhh-h-hHH------------------------HHHHHHHhhhcCCCh
Q 040316 127 SLALECLSRIGN-VDLARDL-----TPEVFTLLSS-N-AVR------------------------VCFKRLVENLESSEP 174 (957)
Q Consensus 127 ~LALr~Ls~I~t-peLa~~L-----~~~V~klL~~-~-AvR------------------------~~~~kL~elL~D~D~ 174 (957)
..|.+.|.++.. +.-.+.+ ...+..++.. + .+| -+++.+...|.++|.
T Consensus 137 ~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDi 216 (503)
T PF10508_consen 137 KAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDI 216 (503)
T ss_pred HHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccH
Confidence 777777777753 2222333 4555555554 1 121 035677778899999
Q ss_pred hHHHHHHHHHHHhhhcCCCC--c---cCchHHHHHHHhhc-C----ChHHHHHHHHHHHhhccCChHHH----hHHHHHH
Q 040316 175 VILSAVVGVFCELCLKDPRS--Y---LPLAPEFYKILVDS-K----NNWLLIKVLKIFAKLATLEPRLA----KRVVEPI 240 (957)
Q Consensus 175 sVv~AAv~vL~EI~~~np~~--~---l~Lap~L~~iL~~~-~----npWlqIkILkLL~~l~p~ep~L~----~kLl~~L 240 (957)
-|..+|+-++.+++. .+.. | ..+++.++.++.+. . +..+..-++++|+.+....|... ..+++.+
T Consensus 217 Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l 295 (503)
T PF10508_consen 217 LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERL 295 (503)
T ss_pred HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 999999999999998 4332 3 24667788888652 2 34456667788888777554432 2344445
Q ss_pred HHHhhcCC--cchHHHHHHHHHHhh------c-CCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH-----
Q 040316 241 CEFMRRTE--AKSLLFECIRTVLSS------L-SEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW----- 306 (957)
Q Consensus 241 ~~lL~~t~--a~SVLyE~I~~Ii~~------l-~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~----- 306 (957)
.+.+.++. -..+.++++-.|..- + ......+..+++.++..+.+...++|--+|.++..|....+.
T Consensus 296 ~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~ 375 (503)
T PF10508_consen 296 FSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND 375 (503)
T ss_pred HHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH
Confidence 55554422 124556666555431 1 111233455677777788888899999999999999543321
Q ss_pred H---Hhh--------hhH-hhcccccCCCHHHHHHHHHHHhhhcCcccHHHHH---HHHHHHhhhcCh-------HHHHH
Q 040316 307 A---VLE--------NKD-FVIKSLSDGDYNIKLESLRLLMSMVSESNVAEIS---RVLINYALKSDP-------EFCNQ 364 (957)
Q Consensus 307 ~---v~~--------h~~-~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV---~ELl~yl~~sD~-------~~r~e 364 (957)
+ ... -.. .|+..++-|=+-||.-++.+|.+||...-...-+ ..+++|+.+... +.|-+
T Consensus 376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ 455 (503)
T PF10508_consen 376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYD 455 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHH
Confidence 1 111 112 6777788887899999999999999987544433 467788865321 34556
Q ss_pred HHHHHH
Q 040316 365 ILGSIL 370 (957)
Q Consensus 365 lI~aI~ 370 (957)
+|++|.
T Consensus 456 ii~~l~ 461 (503)
T PF10508_consen 456 IIKALA 461 (503)
T ss_pred HHHHHH
Confidence 666664
No 22
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.83 E-value=0.042 Score=66.46 Aligned_cols=204 Identities=20% Similarity=0.257 Sum_probs=116.6
Q ss_pred HhhhhHHHHHHHHhhcChH------------------H--HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC
Q 040316 10 LFQRDLDDLIKGIRQQQIK------------------E--SLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGAD 69 (957)
Q Consensus 10 ~f~rsL~dfIr~IR~~k~~------------------E--~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~D 69 (957)
.|+--|.-|=+|||.|.+. | .-|-.+.+--+.++|.++|..-|+..++-+--+.-.-|.+
T Consensus 591 ~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 591 QFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC
Confidence 4556666777777776421 1 2333344677889999999887766554333333356888
Q ss_pred cchhHHHHHHh---------hcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHH----HHHhhccC
Q 040316 70 MSFAAFHAVEV---------MSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSL----ALECLSRI 136 (957)
Q Consensus 70 mS~~~f~VVel---------msS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~L----ALr~Ls~I 136 (957)
-.|..++++-. |+...-..|+++|++.+....-..+ =.++-+-.|+.|.++..|-+ +=+.++++
T Consensus 671 ~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~---~~v~R~v~~lkde~e~yrkm~~etv~ri~~~l 747 (1172)
T KOG0213|consen 671 PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD---PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRL 747 (1172)
T ss_pred HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch---HHHHHHhhhhccccHHHHHHHHHHHHHHHhcc
Confidence 77777776653 7888888999999988765443332 34566777999988855544 44555555
Q ss_pred CchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccC-chHHHHHHHhhcCChHHH
Q 040316 137 GNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLP-LAPEFYKILVDSKNNWLL 215 (957)
Q Consensus 137 ~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~-Lap~L~~iL~~~~npWlq 215 (957)
...++-+.+...++..+-. + +.+ .+..-+|+...+.+++.-.-.+-+.|++ ++......|.+ .++=..
T Consensus 748 g~~diderleE~lidgil~-----A---fqe--qtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn-ksa~vR 816 (1172)
T KOG0213|consen 748 GAADIDERLEERLIDGILY-----A---FQE--QTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN-KSAKVR 816 (1172)
T ss_pred ccccccHHHHHHHHHHHHH-----H---HHh--cccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC-CChhHH
Confidence 5555544333332221110 0 000 1334457766666665554455555542 22223333333 455555
Q ss_pred HHHHHHHHhhcc
Q 040316 216 IKVLKIFAKLAT 227 (957)
Q Consensus 216 IkILkLL~~l~p 227 (957)
+.-.++++.+++
T Consensus 817 qqaadlis~la~ 828 (1172)
T KOG0213|consen 817 QQAADLISSLAK 828 (1172)
T ss_pred HHHHHHHHHHHH
Confidence 555666655554
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.048 Score=69.00 Aligned_cols=403 Identities=14% Similarity=0.111 Sum_probs=225.6
Q ss_pred HHHhhcCCCccchhhhHHHHHhhc---CC-CchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhH--HHHH
Q 040316 77 AVEVMSSPQFFYKKIGYHAVTQSF---ND-DTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLT--PEVF 150 (957)
Q Consensus 77 VVelmsS~~~~~KRlGYLaas~~~---~~-~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~--~~V~ 150 (957)
++....|++...+-++.+-++.+. .. ...-+--..+.|.+=++++.-.+|..|+|+++.+.- .+. +...
T Consensus 123 L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~-----~~~~~~~~~ 197 (1075)
T KOG2171|consen 123 LFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAE-----YLENNKSEV 197 (1075)
T ss_pred HHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH-----HhccchHHH
Confidence 334568999999999988666433 22 233455677889999999877799999999987532 111 1111
Q ss_pred HhhhhhhHHHHHHH----HHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHh-----hcCChHHHHHHHHH
Q 040316 151 TLLSSNAVRVCFKR----LVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILV-----DSKNNWLLIKVLKI 221 (957)
Q Consensus 151 klL~~~AvR~~~~k----L~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~-----~~~npWlqIkILkL 221 (957)
...+..+|. +.+.+.+.|..+...++.+|.|+....|+.+.+..-.++.... +..++=..+..|.+
T Consensus 198 -----~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ 272 (1075)
T KOG2171|consen 198 -----DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEF 272 (1075)
T ss_pred -----HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 112233333 3456678888888999999999999888865433333333221 13444444455555
Q ss_pred HHhhccCChH-------HHhHHHHHHHHHhh------------------cCCcchHHHHHHHHHHhhcCCcHHHHHHHHH
Q 040316 222 FAKLATLEPR-------LAKRVVEPICEFMR------------------RTEAKSLLFECIRTVLSSLSEYESAVKLAVV 276 (957)
Q Consensus 222 L~~l~p~ep~-------L~~kLl~~L~~lL~------------------~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~ 276 (957)
+..+...-|. +...++..+...+. .+....+.-+++-.+...++. ..+......
T Consensus 273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g-~~v~p~~~~ 351 (1075)
T KOG2171|consen 273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG-KQVLPPLFE 351 (1075)
T ss_pred HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-hhehHHHHH
Confidence 5544433222 22233333322221 112345555666554444443 345566788
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhh----cccccCCCHHHHHHHHHHHhhhcCc------ccHHHH
Q 040316 277 KVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFV----IKSLSDGDYNIKLESLRLLMSMVSE------SNVAEI 346 (957)
Q Consensus 277 ~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~I----l~cL~D~D~sIR~~ALeLL~~Lvne------~Nv~~I 346 (957)
.+..+|.|.+.--|..+|.+|+.++.-.++.+..+.+.| +..|+||.+-+|.-|+..+-.|.+. +-..+.
T Consensus 352 ~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~ 431 (1075)
T KOG2171|consen 352 ALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER 431 (1075)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence 888999999999999999999999998887777776655 5578999999999999999888653 112222
Q ss_pred HHHHHHHhhhc--ChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHH-hh----ccCCcchHHHHHHHHHHHHHhcC-
Q 040316 347 SRVLINYALKS--DPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGE-MV----RIPHCQKGEEIEHQIIDIAMRVK- 418 (957)
Q Consensus 347 V~ELl~yl~~s--D~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~-Ll----~~~~~~v~~eI~~~L~dIi~rvp- 418 (957)
+-.++-+..++ .+.....+..++....+...++. .+-|++-|++ ++ .....++.+.++..|-.++.--.
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~---l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI---LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH---HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 22222222222 23445555555554433322322 3448888877 33 23344566666666665553211
Q ss_pred cc---hHHHHHHHHHHhcCCcccCC----CchHHHHHHHhhhhccCCCCCCCHHHHHHHHhcc--cccCCCHHHHHHHHH
Q 040316 419 DV---RPALVHVCRNLLIDPALLGN----PFLHRILSAAAWVSGEYVEFSRNPFELMEALLQP--RTNLLLPSIRAVYVQ 489 (957)
Q Consensus 419 ~i---r~~av~~l~~lL~d~~~l~~----~~~~~~l~a~aWIlGEY~~~i~~p~~iL~~LL~~--~~~~es~~Vq~~iLt 489 (957)
.. .+.++..+.++|....--+. ...-+=+..++.-+|.- .+.+...++++.+... .-.......+...++
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke-~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE-KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh-hhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 11 22333444444433210000 00112234455556621 2334566677655432 123344445555555
Q ss_pred HHHHH
Q 040316 490 SVFKV 494 (957)
Q Consensus 490 Al~Kl 494 (957)
+.+.+
T Consensus 588 ~warm 592 (1075)
T KOG2171|consen 588 FWARM 592 (1075)
T ss_pred HHHHH
Confidence 54443
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.82 E-value=0.074 Score=72.01 Aligned_cols=366 Identities=11% Similarity=0.071 Sum_probs=231.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCCC-c------chhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHH-----HHHHHH
Q 040316 48 DLPTKSAALRKLSYLSSLHGAD-M------SFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILL-----ITNQLR 115 (957)
Q Consensus 48 d~~~K~~AL~KLIYL~ML~G~D-m------S~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllL-----atNtLk 115 (957)
+...+.++++-|-||. .|.+ . .-+....++++.+.+...++.+.-.+..+...+.+.... ++..|-
T Consensus 417 ~~evQ~~Av~aL~~L~--~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV 494 (2102)
T PLN03200 417 TADVQEELIRALSSLC--CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV 494 (2102)
T ss_pred CHHHHHHHHHHHHHHh--CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 3677888999988864 2422 1 125677888999999889988887776666555443322 245566
Q ss_pred HHhcCCCHHHHHHHHHhhccCCc--hh---hH--hhhHHHHHHhhhhh-------hHHH-----------HHHHHHhhhc
Q 040316 116 KDLNSSNQFEVSLALECLSRIGN--VD---LA--RDLTPEVFTLLSSN-------AVRV-----------CFKRLVENLE 170 (957)
Q Consensus 116 KDL~s~Np~vr~LALr~Ls~I~t--pe---La--~~L~~~V~klL~~~-------AvR~-----------~~~kL~elL~ 170 (957)
+=|.++++.++--|..+|+|+.. ++ ++ ...+|.+..+|.+. ++.. .++.+.++|.
T Consensus 495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 66778899999999999998874 22 22 13566777777762 2111 1355777788
Q ss_pred CCChhHHHHHHHHHHHhhh---cCC-----CCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHH-----hHHH
Q 040316 171 SSEPVILSAVVGVFCELCL---KDP-----RSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLA-----KRVV 237 (957)
Q Consensus 171 D~D~sVv~AAv~vL~EI~~---~np-----~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~-----~kLl 237 (957)
.+++.+...++.++-.|.. .+. .....-+|.|.++|.. .++=.+-.-..++..|+...+... ...+
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaI 653 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS-SKEETQEKAASVLADIFSSRQDLCESLATDEII 653 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCH
Confidence 8888887777776644433 211 0011346788888875 466666666677777776655432 3456
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHhhcC--CcH---HHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH---HH
Q 040316 238 EPICEFMRRTEAKSLLFECIRTVLSSLS--EYE---SAVK-LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW---AV 308 (957)
Q Consensus 238 ~~L~~lL~~t~a~SVLyE~I~~Ii~~l~--~~~---~li~-l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~---~v 308 (957)
+++..++++ ....+..|+..++.+... ... .+++ -++..|..+|.++|..++-.++.+|..|+..... +.
T Consensus 654 pPLV~LLss-~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 654 NPCIKLLTN-NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHHHHhc-CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 788888876 556788888887666432 111 1232 3788899999999999999999999999874422 22
Q ss_pred -hhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHH----------HHHHHHHHhhhcChHHHH--HHHHHHHHHHhh
Q 040316 309 -LENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAE----------ISRVLINYALKSDPEFCN--QILGSILSTCCR 375 (957)
Q Consensus 309 -~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~----------IV~ELl~yl~~sD~~~r~--elI~aI~~ic~~ 375 (957)
..-+..++..|.+.....|..|.-.|..||...-+.+ ++.-|+.++...|.+... +++..+..++..
T Consensus 733 ~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 733 AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 2235666777888878899999999999997766555 346677777777665443 456655555432
Q ss_pred hhcc-cccchHHHH--------HHHHHhhccCCcchHHHHHHHHHHHHHhcC
Q 040316 376 NLYE-VIVDFDWYA--------SLLGEMVRIPHCQKGEEIEHQIIDIAMRVK 418 (957)
Q Consensus 376 ~~y~-~~~dfeWyv--------dvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp 418 (957)
++. ......||+ +-|+..+......+.+..++.+-.+++-.|
T Consensus 813 -~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 813 -KGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred -cccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 111 011235775 334444444444455555555544444434
No 25
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0045 Score=73.81 Aligned_cols=315 Identities=17% Similarity=0.173 Sum_probs=196.1
Q ss_pred HHHHHHHhcCCCCcchh-HHHHHHhhcCCCccchhhhHHHHHhhcCCCch----HHHHHHHHHHHHhcCCCHHHHHHHHH
Q 040316 57 RKLSYLSSLHGADMSFA-AFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTP----VILLITNQLRKDLNSSNQFEVSLALE 131 (957)
Q Consensus 57 ~KLIYL~ML~G~DmS~~-~f~VVelmsS~~~~~KRlGYLaas~~~~~~~d----lllLatNtLkKDL~s~Np~vr~LALr 131 (957)
.-++. .. .|.++=.. ++..=+.+.+.....|--|-||+.-.++..-+ -+-..+-.+..=|.|.-|.+|+.+-=
T Consensus 379 LDVLa-nv-f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCW 456 (885)
T KOG2023|consen 379 LDVLA-NV-FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCW 456 (885)
T ss_pred HHHHH-Hh-hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeee
Confidence 34443 34 37775444 44444477888888888888876655443211 11134556666778888888887777
Q ss_pred hhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCC
Q 040316 132 CLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKN 211 (957)
Q Consensus 132 ~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~n 211 (957)
||+.....-..+.- +..+......|..++.|.+--|.-||++++.-+-..-.. .|+|.+=.+|.+
T Consensus 457 TLsRys~wv~~~~~---------~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~---eLVp~l~~IL~~--- 521 (885)
T KOG2023|consen 457 TLSRYSKWVVQDSR---------DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE---ELVPYLEYILDQ--- 521 (885)
T ss_pred eHhhhhhhHhcCCh---------HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHH---
Confidence 77776654443321 111222233466678899999999999999888665443 578877777765
Q ss_pred hHHHHHHHHHHHhhccC---------------------ChHHHhHHHHHHHHHhh--cCCcc--hHHHHHHHHHHhh---
Q 040316 212 NWLLIKVLKIFAKLATL---------------------EPRLAKRVVEPICEFMR--RTEAK--SLLFECIRTVLSS--- 263 (957)
Q Consensus 212 pWlqIkILkLL~~l~p~---------------------ep~L~~kLl~~L~~lL~--~t~a~--SVLyE~I~~Ii~~--- 263 (957)
+.+.|++|... +|+..+.+++|+.+--+ +.... -=++||..+|.+.
T Consensus 522 ------l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 522 ------LVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGV 595 (885)
T ss_pred ------HHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhc
Confidence 55556666542 34555566666654332 11222 3479999988875
Q ss_pred --cCCcHHHHHHHHHHHHHhh------------cCCCchHHHHHHHHHHHHhhhC-----hHHHhh-hhHhhcccccCCC
Q 040316 264 --LSEYESAVKLAVVKVREFL------------VDDDPNLKYLGLQALSIIAPKH-----LWAVLE-NKDFVIKSLSDGD 323 (957)
Q Consensus 264 --l~~~~~li~l~v~~L~~fL------------~ssDpNlrYvaL~~L~~Iv~~~-----p~~v~~-h~~~Il~cL~D~D 323 (957)
+|-.+...+.|++.|+.-+ ...|.+.-.++|..++-+++-- |-+.+. -.+.++.|+.|+-
T Consensus 596 gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~ 675 (885)
T KOG2023|consen 596 GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEV 675 (885)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCC
Confidence 3445677788888887432 2245667778999999888732 223333 3566788999999
Q ss_pred HHHHHHHHHHHhhhcCc------ccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhcc
Q 040316 324 YNIKLESLRLLMSMVSE------SNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRI 397 (957)
Q Consensus 324 ~sIR~~ALeLL~~Lvne------~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~ 397 (957)
+.+|.-+.-||--|+-. -|+...+.-|...+.....+....++-+||.+|.+.... ...|.-.++.+|+.+
T Consensus 676 peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~---~~~~v~~vl~~L~~i 752 (885)
T KOG2023|consen 676 PEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK---MKQYVSPVLEDLITI 752 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh---hhhHHHHHHHHHHHH
Confidence 99999999999877654 233333333333333334567788999999999874221 123343455555544
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.07 Score=67.62 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=108.7
Q ss_pred hcCCChhHHHHHHHHHHHhhhcCC-CCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccC----ChHHHhHHHHHHHHH
Q 040316 169 LESSEPVILSAVVGVFCELCLKDP-RSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL----EPRLAKRVVEPICEF 243 (957)
Q Consensus 169 L~D~D~sVv~AAv~vL~EI~~~np-~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~----ep~L~~kLl~~L~~l 243 (957)
+.+..++|--+.+-++-||++..- ..|-.+.+-+|+.... .++=.+=-.+.+|..+... ..-....+...+..-
T Consensus 89 ~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~ 167 (1075)
T KOG2171|consen 89 QSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQT 167 (1075)
T ss_pred HhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHh
Confidence 457788888888889999988763 3466666666666654 4444333334444443321 111223344444555
Q ss_pred hhcCCcchHHHHHHHHHHhh---cCCcHHH-------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhH
Q 040316 244 MRRTEAKSLLFECIRTVLSS---LSEYESA-------VKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKD 313 (957)
Q Consensus 244 L~~t~a~SVLyE~I~~Ii~~---l~~~~~l-------i~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~ 313 (957)
|...+.. |-..+++++... ++++.+. +-..++.+..++...|...---+|..|..++...|.++.+|..
T Consensus 168 ~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~ 246 (1075)
T KOG2171|consen 168 MTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS 246 (1075)
T ss_pred ccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 5443334 777777776654 3222222 2335556666666666666678999999999999999999999
Q ss_pred hhccc-c-----cCCCHHHHHHHHHHHhhhc
Q 040316 314 FVIKS-L-----SDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 314 ~Il~c-L-----~D~D~sIR~~ALeLL~~Lv 338 (957)
.|+.. | ++-|.++|..||++|..++
T Consensus 247 ~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~ 277 (1075)
T KOG2171|consen 247 QIIQFSLEIAKNKELENSIRHLALEFLVSLS 277 (1075)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 88763 2 3778899999999998764
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.76 E-value=0.014 Score=69.98 Aligned_cols=230 Identities=17% Similarity=0.224 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhhccCCc-hhh----H--hhhHHHHHHhhhhh-------h---HHH---------
Q 040316 107 ILLITNQLRKDLNSSNQFEVSLALECLSRIGN-VDL----A--RDLTPEVFTLLSSN-------A---VRV--------- 160 (957)
Q Consensus 107 llLatNtLkKDL~s~Np~vr~LALr~Ls~I~t-peL----a--~~L~~~V~klL~~~-------A---vR~--------- 160 (957)
.-=....|++=|.++++.+|.+|++.|+++.. .+. + ..+.+.|..++.++ | +..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 33445677888999999999999999988644 221 1 55677888888872 1 111
Q ss_pred -H-----HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCcc-----CchHHHHHHHhhcCChHHHHHHHHHHHhhccCC
Q 040316 161 -C-----FKRLVENLESSEPVILSAVVGVFCELCLKDPRSYL-----PLAPEFYKILVDSKNNWLLIKVLKIFAKLATLE 229 (957)
Q Consensus 161 -~-----~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l-----~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~e 229 (957)
. ...|..++...+..|..-++.++++++...+..+. .+.+.+++.|.+ .+.-.|...+.+|..++...
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcCh
Confidence 1 23344555555778888899999999988776432 255666666666 88889999999999988743
Q ss_pred hHH----HhHHHHHHHHHhhcC---C-cch-HHHHHHHHHHhhcC-CcHHH---HHHHHHHHHHhhcCCCchHHHHHHHH
Q 040316 230 PRL----AKRVVEPICEFMRRT---E-AKS-LLFECIRTVLSSLS-EYESA---VKLAVVKVREFLVDDDPNLKYLGLQA 296 (957)
Q Consensus 230 p~L----~~kLl~~L~~lL~~t---~-a~S-VLyE~I~~Ii~~l~-~~~~l---i~l~v~~L~~fL~ssDpNlrYvaL~~ 296 (957)
.-. ...+++.|.+++... + ..+ ++...++.+.+... ....+ ....+..|-.++.+.|++.+-+|+.+
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dt 313 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDT 313 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 221 123556666666443 2 112 33333333322211 11222 24566677777889999999999999
Q ss_pred HHHHhhhC----------hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhh
Q 040316 297 LSIIAPKH----------LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSM 337 (957)
Q Consensus 297 L~~Iv~~~----------p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~L 337 (957)
+..|+.+. +..+......+..........||.++|+-+..+
T Consensus 314 lg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 314 LGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 99887532 223334456666666666678999999998888
No 28
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.033 Score=67.88 Aligned_cols=384 Identities=15% Similarity=0.171 Sum_probs=249.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHH-hhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHH
Q 040316 38 EEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVE-VMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRK 116 (957)
Q Consensus 38 aEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVe-lmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkK 116 (957)
..+++-........|..|+.+|+|+ + --.|-+++-..++ .+.+++....-..-+-...++..+.++..==.|-++-
T Consensus 103 sslmkD~t~~~d~yr~~AiR~L~~I--~-d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqe 179 (865)
T KOG1078|consen 103 SSLMKDMTGKEDLYRAAAIRALCSI--I-DGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQE 179 (865)
T ss_pred HHHHhhccCCCcchhHHHHHHHHhh--c-CcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhh
Confidence 4456554444556789999999995 3 4455566666665 4566777666666666666777778888888899999
Q ss_pred HhcCCCHHHHHHHHHhhccCCc-hhhHh-hhHHHHH-Hhhhhh-h----HH--------------HHHHHHHhhhcCCCh
Q 040316 117 DLNSSNQFEVSLALECLSRIGN-VDLAR-DLTPEVF-TLLSSN-A----VR--------------VCFKRLVENLESSEP 174 (957)
Q Consensus 117 DL~s~Np~vr~LALr~Ls~I~t-peLa~-~L~~~V~-klL~~~-A----vR--------------~~~~kL~elL~D~D~ 174 (957)
-.++.|.+++.-||-.|-.|+- ..+|- .+..... ..+.+. | +| ..++.+-.+|..+.-
T Consensus 180 a~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~e 259 (865)
T KOG1078|consen 180 AVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSE 259 (865)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhH
Confidence 9999999999999999999854 33331 1111100 111110 0 11 235566678888999
Q ss_pred hHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHH
Q 040316 175 VILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLF 254 (957)
Q Consensus 175 sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLy 254 (957)
+|+.-|..+++.+...++..+-+ +-...+++.+++..-++-.-++.|...+-.-|....-...-+.+++.- .+.++.-
T Consensus 260 mV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd-~NrsIat 337 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITD-SNRSIAT 337 (865)
T ss_pred HHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcc-cccchhH
Confidence 99999999999988777765544 333456777777777777777777666554443222111222333332 3344554
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHH---HhhhhHhhcccccCCCHHHHHHHH
Q 040316 255 ECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWA---VLENKDFVIKSLSDGDYNIKLESL 331 (957)
Q Consensus 255 E~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~---v~~h~~~Il~cL~D~D~sIR~~AL 331 (957)
=+|-+.+.- ..++-+...++.+..|..+=+-+.|.++.+++..++..+|.. .-.+...+++- +.-..-|+-..
T Consensus 338 ~AITtLLKT--G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~--eGg~e~K~aiv 413 (865)
T KOG1078|consen 338 LAITTLLKT--GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE--EGGFEFKRAIV 413 (865)
T ss_pred HHHHHHHHh--cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh--ccCchHHHHHH
Confidence 555555542 223445566777777876667788999999999999988843 33344444432 33355566677
Q ss_pred HHHhhhc--CcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHH
Q 040316 332 RLLMSMV--SESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQ 409 (957)
Q Consensus 332 eLL~~Lv--ne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~ 409 (957)
+.+..++ +.+-=...+..|..|+.++. |....+ .|+++..+..| .+++...|+..+...+-+.+..+....+..
T Consensus 414 d~Ii~iie~~pdsKe~~L~~LCefIEDce--~~~i~~-rILhlLG~EgP-~a~~Pskyir~iyNRviLEn~ivRaaAv~a 489 (865)
T KOG1078|consen 414 DAIIDIIEENPDSKERGLEHLCEFIEDCE--FTQIAV-RILHLLGKEGP-KAPNPSKYIRFIYNRVILENAIVRAAAVSA 489 (865)
T ss_pred HHHHHHHHhCcchhhHHHHHHHHHHHhcc--chHHHH-HHHHHHhccCC-CCCCcchhhHHHhhhhhhhhhhhHHHHHHH
Confidence 7777665 45666778899999998764 333333 34445444444 345566799988888888888888888888
Q ss_pred HHHHHHhcCcchHHHHHHHHHHhcC
Q 040316 410 IIDIAMRVKDVRPALVHVCRNLLID 434 (957)
Q Consensus 410 L~dIi~rvp~ir~~av~~l~~lL~d 434 (957)
+.++....+..++.+...+...+.|
T Consensus 490 laKfg~~~~~l~~sI~vllkRc~~D 514 (865)
T KOG1078|consen 490 LAKFGAQDVVLLPSILVLLKRCLND 514 (865)
T ss_pred HHHHhcCCCCccccHHHHHHHHhcC
Confidence 8888877888888777666666655
No 29
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.012 Score=71.37 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=55.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcc---hhHHHHHH-hhcCCCccchhhhHHHHHhhcCCCchHHHHHHHH
Q 040316 38 EEIRREIKSTDLPTKSAALRKLSYLSSLHGADMS---FAAFHAVE-VMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQ 113 (957)
Q Consensus 38 aEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS---~~~f~VVe-lmsS~~~~~KRlGYLaas~~~~~~~dlllLatNt 113 (957)
.-..+.|+.++.-.|+-|+.-|-- .-|+ ...+..|+ +......-.|+.+-+|+..++.-+++.--...-.
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSs------IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~ 184 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSS------IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEV 184 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHh------cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHH
Confidence 334445555555566666654332 2222 22333333 6667777777777777777776665544455566
Q ss_pred HHHHhcCCCHHHHHHHHHhhccCC
Q 040316 114 LRKDLNSSNQFEVSLALECLSRIG 137 (957)
Q Consensus 114 LkKDL~s~Np~vr~LALr~Ls~I~ 137 (957)
|++=|.|..|.+.|.|+-+.-.++
T Consensus 185 I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 185 IKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred HHHHhcCCCCcchhHHHHHHHHhc
Confidence 677777777777777766655443
No 30
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0046 Score=74.63 Aligned_cols=319 Identities=14% Similarity=0.135 Sum_probs=201.4
Q ss_pred CCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccC-----CchhhHhhhHHHHHHhhhh---------------------
Q 040316 102 DDTPVILLITNQLRKDLNSSNQFEVSLALECLSRI-----GNVDLARDLTPEVFTLLSS--------------------- 155 (957)
Q Consensus 102 ~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I-----~tpeLa~~L~~~V~klL~~--------------------- 155 (957)
+.|+.-.+..+.|+++|.+.+....--|+..+-.. ..|+|...++..|+..=+|
T Consensus 13 ~~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgk 92 (948)
T KOG1058|consen 13 NSPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGK 92 (948)
T ss_pred cCCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcc
Confidence 34577778889999999998888877777655432 2355554444433332222
Q ss_pred ---------hh-----------HH-----------------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCc
Q 040316 156 ---------NA-----------VR-----------------VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPL 198 (957)
Q Consensus 156 ---------~A-----------vR-----------------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~L 198 (957)
++ +| ..+|-+..+|+.+++-|--+|+.++.+|.+..-.+| +=
T Consensus 93 l~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~-pD 171 (948)
T KOG1058|consen 93 LLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLI-PD 171 (948)
T ss_pred cHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhc-CC
Confidence 01 11 124556677778888888888888888876633333 33
Q ss_pred hHHH-HHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhc-C-CcchHHHHHHHHHHhhcCCcHHHHHHHH
Q 040316 199 APEF-YKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRR-T-EAKSLLFECIRTVLSSLSEYESAVKLAV 275 (957)
Q Consensus 199 ap~L-~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~-t-~a~SVLyE~I~~Ii~~l~~~~~li~l~v 275 (957)
+|.+ ++.|.+..+|-..=. .|-.+...+|+.+.+.+.....-+.+ + .--.|+.|-|+-++. .+++....-+
T Consensus 172 apeLi~~fL~~e~DpsCkRN---AFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~---~~p~~~~~~i 245 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRN---AFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL---ANPAEKARYI 245 (948)
T ss_pred hHHHHHHHHHhccCchhHHH---HHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh---cCHHHhhHHH
Confidence 4554 344544333322111 12222223454443332221111111 0 113577777777665 3456666778
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccc-cCCCHHHHHHHHHHHhhhc--CcccHHHHHHHHHH
Q 040316 276 VKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSL-SDGDYNIKLESLRLLMSMV--SESNVAEISRVLIN 352 (957)
Q Consensus 276 ~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL-~D~D~sIR~~ALeLL~~Lv--ne~Nv~~IV~ELl~ 352 (957)
..+-.+|.++++.++|=+--++..+. ..|.++..--+.++.|+ +.+|-.+|.--|+.|+.+. +++-+++++-.++.
T Consensus 246 ~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLr 324 (948)
T KOG1058|consen 246 RCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLR 324 (948)
T ss_pred HHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88889998889999998877766665 57888888888888875 4688899999999999886 33345556666667
Q ss_pred HhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHH-hhccCCc------chHHHHHHHHHHHHHhcCcchHHHH
Q 040316 353 YALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGE-MVRIPHC------QKGEEIEHQIIDIAMRVKDVRPALV 425 (957)
Q Consensus 353 yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~-Ll~~~~~------~v~~eI~~~L~dIi~rvp~ir~~av 425 (957)
.+...|.++|++.+.-++.+.+. -+++-.+++|-+ +....+. ......+..+....+++|++-..+|
T Consensus 325 vLss~dldvr~Ktldi~ldLvss------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV 398 (948)
T KOG1058|consen 325 VLSSPDLDVRSKTLDIALDLVSS------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVV 398 (948)
T ss_pred HcCcccccHHHHHHHHHHhhhhh------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 77778999999999877777553 234446666654 4433322 2345677777778889999988888
Q ss_pred HHHHHHhcC
Q 040316 426 HVCRNLLID 434 (957)
Q Consensus 426 ~~l~~lL~d 434 (957)
..+.+.|.|
T Consensus 399 ~~ll~fisD 407 (948)
T KOG1058|consen 399 SLLLDFISD 407 (948)
T ss_pred HHHHHHhcc
Confidence 888877765
No 31
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.56 E-value=0.04 Score=64.59 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCC-chHHHHHHHhhhhccCCCCCCCH---H-------HHHHHHhcc-
Q 040316 407 EHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNP-FLHRILSAAAWVSGEYVEFSRNP---F-------ELMEALLQP- 474 (957)
Q Consensus 407 ~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~-~~~~~l~a~aWIlGEY~~~i~~p---~-------~iL~~LL~~- 474 (957)
..++..+..++|++--..-+.+.+.+... .++ ...++....+|++|||+.-.-+. . +.++.++..
T Consensus 289 ss~ll~lfk~~PsLvv~l~~~ilef~g~~---~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~ 365 (459)
T PF14764_consen 289 SSQLLALFKRHPSLVVELSKEILEFLGSA---SNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEV 365 (459)
T ss_pred HHHHHHHHHhCcHHHHHhHHHHHHHhccc---ccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHH
Confidence 34455555566654333333333333221 122 35677889999999998754442 2 334433321
Q ss_pred ---------cccCCCHHHHHHHHHHHHHHHHHhh
Q 040316 475 ---------RTNLLLPSIRAVYVQSVFKVLIFCA 499 (957)
Q Consensus 475 ---------~~~~es~~Vq~~iLtAl~Klf~~~~ 499 (957)
.....++.+-.+++|+++|+..+|.
T Consensus 366 ~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~ 399 (459)
T PF14764_consen 366 TQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQ 399 (459)
T ss_pred hhccccccccCCCCchhHHHHHHHHHHHHHHhCH
Confidence 1235667788899999999999964
No 32
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.51 E-value=0.0023 Score=66.15 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=77.6
Q ss_pred CchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccH---HHHHHHHHHHhhhcChHHH
Q 040316 286 DPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNV---AEISRVLINYALKSDPEFC 362 (957)
Q Consensus 286 DpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv---~~IV~ELl~yl~~sD~~~r 362 (957)
+|.+|--++.++..++.++|.++.+|...++.||.|+|+.+|+.||-+|..|..++-+ ..++.+++..+.+.|+++|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 5788999999999999999999999999999999999999999999999999887553 3355788888888899998
Q ss_pred HHHHHHHHHHHhh
Q 040316 363 NQILGSILSTCCR 375 (957)
Q Consensus 363 ~elI~aI~~ic~~ 375 (957)
..+...+..+..+
T Consensus 81 ~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 81 SLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHh
Confidence 8888777666554
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.18 Score=59.94 Aligned_cols=251 Identities=13% Similarity=0.099 Sum_probs=148.1
Q ss_pred HHHHhhhcCCChhHHHHHH---HHHHHhhhcCCCCccCchHHHHHHHhh---cCChHHHHHHHHHHHhhccCChH-HH--
Q 040316 163 KRLVENLESSEPVILSAVV---GVFCELCLKDPRSYLPLAPEFYKILVD---SKNNWLLIKVLKIFAKLATLEPR-LA-- 233 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv---~vL~EI~~~np~~~l~Lap~L~~iL~~---~~npWlqIkILkLL~~l~p~ep~-L~-- 233 (957)
.-+..+-.|.|..|-.+|= .++.+|.......|. .+.|+.+|.. ..+|...+.+++-+..+...-+. ..
T Consensus 128 dvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFs--L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~y 205 (675)
T KOG0212|consen 128 DVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFS--LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISY 205 (675)
T ss_pred HHHHHHhcCCccccccHHHHHHHHHHHhccccccccC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhc
Confidence 3344455699999988873 355666555544442 3444444432 35777777777777665432221 11
Q ss_pred -hHHHHHHHHHhhcCCcchHHHHHHHHHH---hhcCCcHHH--HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHH
Q 040316 234 -KRVVEPICEFMRRTEAKSLLFECIRTVL---SSLSEYESA--VKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWA 307 (957)
Q Consensus 234 -~kLl~~L~~lL~~t~a~SVLyE~I~~Ii---~~l~~~~~l--i~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~ 307 (957)
..+++.+.+.+.- ++..|---|=.++- +.+...++. ....++.|..-+.++++.++-.||..+..+++..|..
T Consensus 206 l~~~ldGLf~~LsD-~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~ 284 (675)
T KOG0212|consen 206 LPSLLDGLFNMLSD-SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284 (675)
T ss_pred chHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence 1233334444432 22333322222111 111112222 2335566666678899999999999999999999876
Q ss_pred Hhhhh----HhhcccccCCCH-HHHHHHHH---HHhhhcCcccHH------HHHHHHHHHhhhcChHHHHHHHHHHHHHH
Q 040316 308 VLENK----DFVIKSLSDGDY-NIKLESLR---LLMSMVSESNVA------EISRVLINYALKSDPEFCNQILGSILSTC 373 (957)
Q Consensus 308 v~~h~----~~Il~cL~D~D~-sIR~~ALe---LL~~Lvne~Nv~------~IV~ELl~yl~~sD~~~r~elI~aI~~ic 373 (957)
+-.+. ..++.|+.|.+. +|+-.|-. ++..++.+.-.. .|++-|.+|+.+...+-|..++.=|..+-
T Consensus 285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~ 364 (675)
T KOG0212|consen 285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLY 364 (675)
T ss_pred hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 65554 457889998777 57665543 456676665444 89999999999998899999888887664
Q ss_pred hhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHh
Q 040316 374 CRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMR 416 (957)
Q Consensus 374 ~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~r 416 (957)
.+..-+...-.+-...+|++-+....+.+.......+..|+..
T Consensus 365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 4311111111122455666655555555666666666666653
No 34
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.33 E-value=0.038 Score=68.48 Aligned_cols=283 Identities=15% Similarity=0.187 Sum_probs=160.5
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCC----CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChH---H-H
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPR----SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPR---L-A 233 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~----~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~---L-~ 233 (957)
+++|..+|..++..++-.|+.+|+.++-...- .-..++|.|..+|.+ .++.. ..+++|..++..+.. + .
T Consensus 333 V~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~-val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 333 VEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD--PNFRE-VALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--CchHH-HHHHHHHHhccCHhhHHHHhh
Confidence 56677777777888888888888888754311 123577888888864 23333 356777666654321 1 1
Q ss_pred hHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHH--HHHHhh----cCCCchHHHHHHHHHHHHhhhCh--
Q 040316 234 KRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVV--KVREFL----VDDDPNLKYLGLQALSIIAPKHL-- 305 (957)
Q Consensus 234 ~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~--~L~~fL----~ssDpNlrYvaL~~L~~Iv~~~p-- 305 (957)
...++.+..++-.++...+-.|.+.++++. ..++...+..+. .|..++ ...|| +.+..+..|.+..+
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL-a~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINL-ALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPL 484 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHH-hcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchH
Confidence 123455555554444455555555554442 222222222221 233332 34443 33445555555442
Q ss_pred -HHHhhhhHhhcccccC-CCHHHHHHHHHHHhhhcCcc-cHHHHHHH--HHHHhhh------cChHHHHHHHHHHHHHHh
Q 040316 306 -WAVLENKDFVIKSLSD-GDYNIKLESLRLLMSMVSES-NVAEISRV--LINYALK------SDPEFCNQILGSILSTCC 374 (957)
Q Consensus 306 -~~v~~h~~~Il~cL~D-~D~sIR~~ALeLL~~Lvne~-Nv~~IV~E--Ll~yl~~------sD~~~r~elI~aI~~ic~ 374 (957)
..|..++..+..++.. .+......+|-+|..|...+ ++..++++ |+.|+.+ ++++..-++|.-++.+|.
T Consensus 485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 3566677776666653 36788888999999887543 78888864 5666654 466788888888887765
Q ss_pred hhhcccccc--hHHHHHHHHHhhccCC--cchHHHHHHHHHHHHHhcCcchHHHHH------HHHHHhcCCcccCCCchH
Q 040316 375 RNLYEVIVD--FDWYASLLGEMVRIPH--CQKGEEIEHQIIDIAMRVKDVRPALVH------VCRNLLIDPALLGNPFLH 444 (957)
Q Consensus 375 ~~~y~~~~d--feWyvdvLl~Ll~~~~--~~v~~eI~~~L~dIi~rvp~ir~~av~------~l~~lL~d~~~l~~~~~~ 444 (957)
.. ..+.- ..-.+..|++++.... +.+.-.++.++.+++. ++..|+.+++ .++.++.|. |....
T Consensus 565 d~--~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~-h~~tr~~ll~~~~~~~ylidL~~d~----N~~ir 637 (708)
T PF05804_consen 565 DP--ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF-HEETREVLLKETEIPAYLIDLMHDK----NAEIR 637 (708)
T ss_pred CH--HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc-ChHHHHHHHhccchHHHHHHHhcCC----CHHHH
Confidence 32 11110 0125778888886543 3344455555555554 4666665543 444555442 33334
Q ss_pred HHHHHHhhhhccCCC
Q 040316 445 RILSAAAWVSGEYVE 459 (957)
Q Consensus 445 ~~l~a~aWIlGEY~~ 459 (957)
.+.-.|.=|++||-.
T Consensus 638 ~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 638 KVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHHHHHHHhCH
Confidence 445566777778753
No 35
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.2 Score=59.46 Aligned_cols=338 Identities=19% Similarity=0.189 Sum_probs=187.0
Q ss_pred hhhhHHhhhh------HHHHHHHHhhcChHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhcCCCCcc----hh
Q 040316 5 SIMETLFQRD------LDDLIKGIRQQQIKESLFISKAIEEIRREIK-STDLPTKSAALRKLSYLSSLHGADMS----FA 73 (957)
Q Consensus 5 ~~~~~~f~rs------L~dfIr~IR~~k~~E~~~I~~elaEIR~eL~-S~d~~~K~~AL~KLIYL~ML~G~DmS----~~ 73 (957)
++-|..|||. |..++|++-+ .++-..|.+.++++-.++- +++...++-++--+.......|.+-. ..
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~--~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVN--NNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 3445556653 3334443322 2344555666665444443 44444444444444443222477743 34
Q ss_pred HHHHHHhhcCCCccchhhhHHHHHhhcC-CCchHHH---HHHHHHHHHhcCCCHHHHHHH---HHhhccCCchhhHhhhH
Q 040316 74 AFHAVEVMSSPQFFYKKIGYHAVTQSFN-DDTPVIL---LITNQLRKDLNSSNQFEVSLA---LECLSRIGNVDLARDLT 146 (957)
Q Consensus 74 ~f~VVelmsS~~~~~KRlGYLaas~~~~-~~~dlll---LatNtLkKDL~s~Np~vr~LA---Lr~Ls~I~tpeLa~~L~ 146 (957)
.+.|+.+++.++...+--++-.+-.... ...++.. .+--.+.|=..++++.+++.| =|.+--|.+++-+.-=.
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCH
Confidence 4556667777766655444332221111 0111110 112234444455666666544 34445555554432223
Q ss_pred HHHHHhhhh------hhHH-----------------------HHHHHHHhhhcCCChhHHHHHH----HHHHHhhhcCCC
Q 040316 147 PEVFTLLSS------NAVR-----------------------VCFKRLVENLESSEPVILSAVV----GVFCELCLKDPR 193 (957)
Q Consensus 147 ~~V~klL~~------~AvR-----------------------~~~~kL~elL~D~D~sVv~AAv----~vL~EI~~~np~ 193 (957)
+.++.+|+. ...| .+++-|..+|.|+.+.|..-+= .++.||. ..|.
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~-s~P~ 244 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR-SSPS 244 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-cCcc
Confidence 334444443 1111 1245567789999999874333 4555655 3444
Q ss_pred --CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHH----HhHHHHHHHHHhhcCCcchHHHHHHHH----HHhh
Q 040316 194 --SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRL----AKRVVEPICEFMRRTEAKSLLFECIRT----VLSS 263 (957)
Q Consensus 194 --~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L----~~kLl~~L~~lL~~t~a~SVLyE~I~~----Ii~~ 263 (957)
.|...++.++.-+- ++.|..|.+.|.-+.-+.+.-++- ..+++..+.+++..+..++ .+++... ++..
T Consensus 245 s~d~~~~i~vlv~~l~-ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~-i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQ-SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMS-IKEYAQMVNGLLLKL 322 (675)
T ss_pred ccCcccchhhcccccc-CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcccc-HHHHHHHHHHHHHHH
Confidence 35555554444333 589999999998888877754431 1233444445555544432 2333221 1121
Q ss_pred cCCc----HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhc----ccccCCCHHHHHHHHHHHh
Q 040316 264 LSEY----ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVI----KSLSDGDYNIKLESLRLLM 335 (957)
Q Consensus 264 l~~~----~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il----~cL~D~D~sIR~~ALeLL~ 335 (957)
.+.. +-.....++.|.+.+.++.-+.|..+|..+..+..++|.-+..|.+.|| ..|.|++--+-.++|+++.
T Consensus 323 ~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla 402 (675)
T KOG0212|consen 323 VSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLA 402 (675)
T ss_pred HhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 1110 1113467888999999889999999999999999999976666665554 4678999999999999999
Q ss_pred hhcCcccHHHHH
Q 040316 336 SMVSESNVAEIS 347 (957)
Q Consensus 336 ~Lvne~Nv~~IV 347 (957)
.+|+..|-...+
T Consensus 403 ~i~~s~~~~~~~ 414 (675)
T KOG0212|consen 403 SICSSSNSPNLR 414 (675)
T ss_pred HHhcCcccccHH
Confidence 999988764433
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.21 E-value=0.18 Score=59.28 Aligned_cols=333 Identities=18% Similarity=0.199 Sum_probs=178.2
Q ss_pred HHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHH
Q 040316 123 QFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEF 202 (957)
Q Consensus 123 p~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L 202 (957)
+..+-+=++.++.+..++.++++..-+-.++..+ -+.+..|.+....++..|. .|
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~---------------------~~~~~~f~~~~~~~~~~~~----~f 106 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED---------------------DTRVKLFHDDALLKKKTWE----PF 106 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---------------------hHHHHHHHHHhhccccchH----HH
Confidence 3344444556666666666665555444444431 1223344444434455443 24
Q ss_pred HHHHhhcCChHHHHHHHHHHHhhccCCh-----HHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcC--CcHHHH--HH
Q 040316 203 YKILVDSKNNWLLIKVLKIFAKLATLEP-----RLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLS--EYESAV--KL 273 (957)
Q Consensus 203 ~~iL~~~~npWlqIkILkLL~~l~p~ep-----~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~--~~~~li--~l 273 (957)
+++|.. .+.+.+.+..++++.+....+ .....+.+.+.+.++........+-|+.++...+. ....+. ..
T Consensus 107 l~lL~~-~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 107 FNLLNR-QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHcC-CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 455543 566677777777777654321 11223445555566543334455555555433222 221111 12
Q ss_pred HHHHHHHhhcC--CCchHHHHHHHHHHHHhhhCh--------HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcc--
Q 040316 274 AVVKVREFLVD--DDPNLKYLGLQALSIIAPKHL--------WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES-- 341 (957)
Q Consensus 274 ~v~~L~~fL~s--sDpNlrYvaL~~L~~Iv~~~p--------~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~-- 341 (957)
.+..|...|.. .+..+.|=+|.++=.+.-... .++......+=.+.+ .-|-|-++-++..+++..
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~K---EKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTK---EKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhh---HHHHHHHHHHHHHHhhcccc
Confidence 45566666632 356888888888776654322 122222222222222 235556777778887743
Q ss_pred ------cHHHHHH-HHHHHhhh------cChHHHHHHHH--HHHHHHhhhhcccccchHHHHHHHH-HhhccCCcchHHH
Q 040316 342 ------NVAEISR-VLINYALK------SDPEFCNQILG--SILSTCCRNLYEVIVDFDWYASLLG-EMVRIPHCQKGEE 405 (957)
Q Consensus 342 ------Nv~~IV~-ELl~yl~~------sD~~~r~elI~--aI~~ic~~~~y~~~~dfeWyvdvLl-~Ll~~~~~~v~~e 405 (957)
....+|. .+...+.. +|+++..++-. .++.- .+...+.|+-|..=+. ..+.-+..+..+.
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~----~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKN----SVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH----HHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 1233333 34443332 57777765442 33222 2233567888876443 3555444444555
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHHHHHHHH-----hcccccCCC
Q 040316 406 IEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEAL-----LQPRTNLLL 480 (957)
Q Consensus 406 I~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~~iL~~L-----L~~~~~~es 480 (957)
-|..= +.|..+-.-.+++.++++|.. ...+..+++++.=+|||+.+.+....+++.+ +..-.....
T Consensus 339 FW~EN---~~kf~~~~~~llk~L~~iL~~------s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d 409 (429)
T cd00256 339 FWREN---ADRLNEKNYELLKILIHLLET------SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED 409 (429)
T ss_pred HHHHH---HHHHHhcchHHHHHHHHHHhc------CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC
Confidence 56542 222223335677888888832 1346678999999999999887765555421 111234579
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040316 481 PSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 481 ~~Vq~~iLtAl~Klf~~ 497 (957)
++||-..|.|+-|+.++
T Consensus 410 ~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 410 PNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999765
No 37
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.14 E-value=0.1 Score=64.88 Aligned_cols=325 Identities=15% Similarity=0.190 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcc------hhHHHHHHhhcCCCccchhhhH-----HHHHh
Q 040316 30 SLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMS------FAAFHAVEVMSSPQFFYKKIGY-----HAVTQ 98 (957)
Q Consensus 30 ~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS------~~~f~VVelmsS~~~~~KRlGY-----Laas~ 98 (957)
...++.-+.||-..+...|...-..++.-|.++ |. ++..+ ...-.++.++.|+-++---+.- .|++.
T Consensus 688 ~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl-~~-~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~ 765 (1233)
T KOG1824|consen 688 AELLEAVLVELPPLISESDLHVTQLAVAFLTTL-AI-IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVI 765 (1233)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-Hh-cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHh
Confidence 344555677888888888888778888888885 43 77643 3566788888888877554322 24443
Q ss_pred hcCCCchHHHHHHHHHHHHhcCCC------H-----HHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHH-------
Q 040316 99 SFNDDTPVILLITNQLRKDLNSSN------Q-----FEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRV------- 160 (957)
Q Consensus 99 ~~~~~~dlllLatNtLkKDL~s~N------p-----~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~------- 160 (957)
.-.++-| -+.....+.+=.-+.+ + .-++.||.+.+.=.++.++-.+..++..-=++.+++.
T Consensus 766 t~~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 766 TKEPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred cCCCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhh
Confidence 3333333 2222233333222211 1 1123345555544455666666655553111223321
Q ss_pred -------------HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhc-
Q 040316 161 -------------CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLA- 226 (957)
Q Consensus 161 -------------~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~- 226 (957)
.+.-+.+.+..++-.|.+||..++-.++--+-..|+++ +...+. ..|.-|--+|.-|....
T Consensus 845 Elgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpf---il~qi~--sqpk~QyLLLhSlkevi~ 919 (1233)
T KOG1824|consen 845 ELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPF---ILEQIE--SQPKRQYLLLHSLKEVIV 919 (1233)
T ss_pred hhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHH---HHHHHh--cchHhHHHHHHHHHHHHH
Confidence 23356788899999999999999999988776667544 333333 33444444444333322
Q ss_pred cCCh----HHHhHHHHHHHHHhhcC--CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 040316 227 TLEP----RLAKRVVEPICEFMRRT--EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSII 300 (957)
Q Consensus 227 p~ep----~L~~kLl~~L~~lL~~t--~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~I 300 (957)
.... ..+.++...+..-.... ....|+-||.--.+-. +.++ ..-+|...+.+.++|.|-.++.++...
T Consensus 920 ~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~--epes----LlpkL~~~~~S~a~~~rs~vvsavKfs 993 (1233)
T KOG1824|consen 920 SASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLI--EPES----LLPKLKLLLRSEASNTRSSVVSAVKFS 993 (1233)
T ss_pred HhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhC--ChHH----HHHHHHHHhcCCCcchhhhhhheeeee
Confidence 1111 12344444443333211 1257899998765542 2233 346788888999999999999999888
Q ss_pred hhhChH----HHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc--ccHHHHHHHHHHHhhhcChHHHHHHHHHH
Q 040316 301 APKHLW----AVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE--SNVAEISRVLINYALKSDPEFCNQILGSI 369 (957)
Q Consensus 301 v~~~p~----~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne--~Nv~~IV~ELl~yl~~sD~~~r~elI~aI 369 (957)
+..+|. ++++++..|+..+.|||..+|+.||-.+-.-+.. +=+.+++.+|+..+-+ ...++.++|+.+
T Consensus 994 isd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~-eTkvrkelIreV 1067 (1233)
T KOG1824|consen 994 ISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYS-ETKVRKELIREV 1067 (1233)
T ss_pred ecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHH-hhhhhHhhhhhh
Confidence 877764 5677788999999999999999999998876532 3366777787776643 345666666643
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.22 Score=59.30 Aligned_cols=212 Identities=14% Similarity=0.172 Sum_probs=144.4
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCC--Cc---cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCC-h----H
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPR--SY---LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLE-P----R 231 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~--~~---l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~e-p----~ 231 (957)
.|.|..+|.+++..|.--|+-+|-.|+.+.|. .| ...++.|.+++.....-=+.-.+.=.|..+|+.. | .
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~ 233 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFD 233 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHH
Confidence 56788899999999999999999988887764 12 1344556666654222012222333455566532 2 4
Q ss_pred HHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC--
Q 040316 232 LAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVK-----LAVVKVREFLVDDDPNLKYLGLQALSIIAPKH-- 304 (957)
Q Consensus 232 L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~-- 304 (957)
....+++.|..+++++. .-|+-.+.-++.+..+..++.++ -++.+|..+|.+.+++++--||+++..|+.-.
T Consensus 234 ~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 234 VVAPILPALLRLLHSTD-EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence 56678899999998854 45555555544443333333332 36678889999999999999999999987532
Q ss_pred -hHHHhh--hhHhhccccc-CCCHHHHHHHHHHHhhhcCcccH---H-----HHHHHHHHHhhhcChHHHHHHHHHHHHH
Q 040316 305 -LWAVLE--NKDFVIKSLS-DGDYNIKLESLRLLMSMVSESNV---A-----EISRVLINYALKSDPEFCNQILGSILST 372 (957)
Q Consensus 305 -p~~v~~--h~~~Il~cL~-D~D~sIR~~ALeLL~~Lvne~Nv---~-----~IV~ELl~yl~~sD~~~r~elI~aI~~i 372 (957)
...+.. -...+..++. .+-.+||+.|.=++..++- .|. + .++..|+.-+..+|...|.|+.-+|..+
T Consensus 313 QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ 391 (514)
T KOG0166|consen 313 QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNL 391 (514)
T ss_pred HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhh
Confidence 222222 3466666776 6666799999999999875 443 2 3457888888899999999999999988
Q ss_pred Hhh
Q 040316 373 CCR 375 (957)
Q Consensus 373 c~~ 375 (957)
|+.
T Consensus 392 ts~ 394 (514)
T KOG0166|consen 392 TSS 394 (514)
T ss_pred ccc
Confidence 764
No 39
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.21 Score=60.21 Aligned_cols=161 Identities=16% Similarity=0.233 Sum_probs=106.0
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHH
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPI 240 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L 240 (957)
..|.|.++|+.+|....-.|+.++..||...++.+-.=+ + +-+-+.+.=+.|++|.. ..|..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~------~-~rpl~~mipkfl~f~~h---~spki-------- 190 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDV------L-TRPLNIMIPKFLQFFKH---PSPKI-------- 190 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhc------c-cCchHHhHHHHHHHHhC---CChhH--------
Confidence 467788999999999999999999999987765321100 0 11112222222222211 12211
Q ss_pred HHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHH---hhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcc
Q 040316 241 CEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVRE---FLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIK 317 (957)
Q Consensus 241 ~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~---fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~ 317 (957)
.+....|+|.++-. ...+++..+-+.|.. +-++.+|++|--++.+|..+...+|+-+.+|...|++
T Consensus 191 ---------Rs~A~~cvNq~i~~--~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Ive 259 (885)
T KOG2023|consen 191 ---------RSHAVGCVNQFIII--QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVE 259 (885)
T ss_pred ---------HHHHHhhhhheeec--CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHH
Confidence 24456788877653 223443322222322 2267899999999999999999999999999887765
Q ss_pred ----cccCCCHHHHHHHHHHHhhhcCcccHHHHHHHH
Q 040316 318 ----SLSDGDYNIKLESLRLLMSMVSESNVAEISRVL 350 (957)
Q Consensus 318 ----cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~EL 350 (957)
.-.|+|..|...|-|...++|...-...++...
T Consensus 260 yML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 260 YMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 456999999999999999999987666655433
No 40
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.81 E-value=0.37 Score=57.79 Aligned_cols=262 Identities=17% Similarity=0.247 Sum_probs=150.7
Q ss_pred HHHhhccC--ChHHHhHHHHHHHHHhhcC-CcchHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 040316 221 IFAKLATL--EPRLAKRVVEPICEFMRRT-EAKSLLFECIRTVLSSLSE-YESAVKLAVVKVREFLVDDDPNLKYLGLQA 296 (957)
Q Consensus 221 LL~~l~p~--ep~L~~kLl~~L~~lL~~t-~a~SVLyE~I~~Ii~~l~~-~~~li~l~v~~L~~fL~ssDpNlrYvaL~~ 296 (957)
+|.++... +.++.+.+++.+..-++.. +..++++-|..+++..+.- .......++..+...|.++.|++|--|+..
T Consensus 548 i~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl 627 (975)
T COG5181 548 IFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADL 627 (975)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 44455443 5677788888888777653 4467888887776543211 112234577777788899999999999998
Q ss_pred HHHHhhhC-----hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc---c----cHHHHHHHHHHHhhhcChHHHHH
Q 040316 297 LSIIAPKH-----LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE---S----NVAEISRVLINYALKSDPEFCNQ 364 (957)
Q Consensus 297 L~~Iv~~~-----p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne---~----Nv~~IV~ELl~yl~~sD~~~r~e 364 (957)
+..|+..- ...+...-..+++.|...++.+---.|.-++.+++- + -+..|+..|.-.+++-...+...
T Consensus 628 ~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~n 707 (975)
T COG5181 628 MGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVAN 707 (975)
T ss_pred HHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhh
Confidence 88776532 244555556667788877777655555555555443 3 35567777777777666666666
Q ss_pred HHHHHHHHHhhhhcccccchHHHHHHHHHhhcc---CCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCC
Q 040316 365 ILGSILSTCCRNLYEVIVDFDWYASLLGEMVRI---PHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNP 441 (957)
Q Consensus 365 lI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~---~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~ 441 (957)
-|.-++.||.. .+++++-.+|- .+.++|+.+ -+..+.......+=-|.+ .+-+. ..+. .|.+. ++..
T Consensus 708 ti~lvg~I~~~-~peyi~~rEWM-RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~---aiGPq--dvL~-~Llnn--Lkvq 777 (975)
T COG5181 708 TIALVGTICMN-SPEYIGVREWM-RICFELVDSLKSWNKEIRRNATETFGCISR---AIGPQ--DVLD-ILLNN--LKVQ 777 (975)
T ss_pred HHHHHHHHHhc-CcccCCHHHHH-HHHHHHHHHHHHhhHHHHHhhhhhhhhHHh---hcCHH--HHHH-HHHhc--chHH
Confidence 77777777764 57778777884 333333322 111111000000000000 01000 0011 11110 0000
Q ss_pred -chHHH-HHHHhhhhccCCCCCCCHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 442 -FLHRI-LSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 442 -~~~~~-l~a~aWIlGEY~~~i~~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
....+ -..++-|+|||+. |-.++-.|+. -+..-...||.-+|-|.+-+|-+
T Consensus 778 eRq~RvctsvaI~iVae~cg----pfsVlP~lm~-dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 778 ERQQRVCTSVAISIVAEYCG----PFSVLPTLMS-DYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred HHHhhhhhhhhhhhhHhhcC----chhhHHHHHh-cccCchhHHHHhHHHHHHHHHHH
Confidence 01122 2456678999986 5566666655 46666778999999988877755
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=2 Score=51.50 Aligned_cols=281 Identities=15% Similarity=0.156 Sum_probs=127.8
Q ss_pred hhHHHHHHhhc-CCCccchhhhHHHHHhhcCCCchHHH-----HHHHHHHHHhcCCCHHHHHHHHHhhccCCchh-hHhh
Q 040316 72 FAAFHAVEVMS-SPQFFYKKIGYHAVTQSFNDDTPVIL-----LITNQLRKDLNSSNQFEVSLALECLSRIGNVD-LARD 144 (957)
Q Consensus 72 ~~~f~VVelms-S~~~~~KRlGYLaas~~~~~~~dlll-----LatNtLkKDL~s~Np~vr~LALr~Ls~I~tpe-La~~ 144 (957)
+.....|+++. ..+...+.-.=-+++..+...++..- -++-.|.+=|.|+++.++.-|.-+|+||.-.. .+++
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 34555566664 33344444444455555554433221 22334666778888888888888888876421 1121
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHhhhcCCCh-hHHHHHHHHHHHhhhc-CCCC-c---cCchHHHHHHHhhcCChHHHHHH
Q 040316 145 LTPEVFTLLSSNAVRVCFKRLVENLESSEP-VILSAVVGVFCELCLK-DPRS-Y---LPLAPEFYKILVDSKNNWLLIKV 218 (957)
Q Consensus 145 L~~~V~klL~~~AvR~~~~kL~elL~D~D~-sVv~AAv~vL~EI~~~-np~~-~---l~Lap~L~~iL~~~~npWlqIkI 218 (957)
++ +.+ .+.+.|..++...++ +.+-.+.=+|..+|+. +|.. | .++.|.|.++|.. .++=.+.-.
T Consensus 189 ~v------l~~----g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~-~D~~Vl~Da 257 (514)
T KOG0166|consen 189 YV------LSC----GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS-TDEEVLTDA 257 (514)
T ss_pred HH------Hhh----cchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 11 000 011223333332222 2333333333333332 1321 1 2233333333321 111111111
Q ss_pred HHHHHhhccCChH-----HHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHH----H-HHHHHHHHHhhc-CCCc
Q 040316 219 LKIFAKLATLEPR-----LAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESA----V-KLAVVKVREFLV-DDDP 287 (957)
Q Consensus 219 LkLL~~l~p~ep~-----L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~l----i-~l~v~~L~~fL~-ssDp 287 (957)
.=.+..++-..++ ......+.+..+|.+ ....|+--|+++|.+.....+.. + ..++..|..++. +...
T Consensus 258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~ 336 (514)
T KOG0166|consen 258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKE 336 (514)
T ss_pred HHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcch
Confidence 1111111111000 011233444445544 22334444555544432222111 1 235566777775 3344
Q ss_pred hHHHHHHHHHHHHhhhChHH-----HhhhhHhhcccccCCCHHHHHHHHHHHhhhcCccc---HH-----HHHHHHHHHh
Q 040316 288 NLKYLGLQALSIIAPKHLWA-----VLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESN---VA-----EISRVLINYA 354 (957)
Q Consensus 288 NlrYvaL~~L~~Iv~~~p~~-----v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~N---v~-----~IV~ELl~yl 354 (957)
.+|=-|+..++.|+.-.+.- -..-...++.+|...|..+|+.|.=.+..++...+ +. .|++.|..++
T Consensus 337 ~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL 416 (514)
T KOG0166|consen 337 SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL 416 (514)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc
Confidence 47777777777776544421 12245666777777777777777777777665544 22 2556677777
Q ss_pred hhcChHHHHH
Q 040316 355 LKSDPEFCNQ 364 (957)
Q Consensus 355 ~~sD~~~r~e 364 (957)
.-.|......
T Consensus 417 ~~~D~~ii~v 426 (514)
T KOG0166|consen 417 TCPDVKIILV 426 (514)
T ss_pred cCCChHHHHH
Confidence 5556554433
No 42
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.23 Score=59.09 Aligned_cols=264 Identities=11% Similarity=0.146 Sum_probs=136.6
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCc----hhhHhhhHHHHHHhhhhh-------hHHH--
Q 040316 94 HAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGN----VDLARDLTPEVFTLLSSN-------AVRV-- 160 (957)
Q Consensus 94 Laas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~t----peLa~~L~~~V~klL~~~-------AvR~-- 160 (957)
-|.+..+.++++...-..-.|--=|++.-+.+.--|-|.++.+.+ +++....+..+...|++. |+|.
T Consensus 249 r~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln 328 (898)
T COG5240 249 RATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILN 328 (898)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 355556666777666555555555556556655555555555443 344444444444444441 3331
Q ss_pred ------------HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHH----hhcCChHHHHHHHHHHHh
Q 040316 161 ------------CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKIL----VDSKNNWLLIKVLKIFAK 224 (957)
Q Consensus 161 ------------~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL----~~~~npWlqIkILkLL~~ 224 (957)
|=+.+-.++.|.+-.+..=|+..|..-... + -+.+|++.+ .+..++|- |-++..++.
T Consensus 329 ~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~--e----~idrLv~~I~sfvhD~SD~FK-iI~ida~rs 401 (898)
T COG5240 329 QLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTE--E----TIDRLVNLIPSFVHDMSDGFK-IIAIDALRS 401 (898)
T ss_pred HHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCch--h----hHHHHHHHHHHHHHhhccCce-EEeHHHHHH
Confidence 122344455555555544444444332211 1 112222222 22234443 334455555
Q ss_pred hccCChHHHhHHHHHHHHHhhcCCcc---hHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHh
Q 040316 225 LATLEPRLAKRVVEPICEFMRRTEAK---SLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIA 301 (957)
Q Consensus 225 l~p~ep~L~~kLl~~L~~lL~~t~a~---SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv 301 (957)
++-.=|+-..-+++.|.+.|-.-.+. --..++|.-++.. .++....+...|+.|+++. +.--++++.|..+.
T Consensus 402 Lsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~---~p~skEraLe~LC~fIEDc--ey~~I~vrIL~iLG 476 (898)
T COG5240 402 LSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN---DPDSKERALEVLCTFIEDC--EYHQITVRILGILG 476 (898)
T ss_pred HHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHhhc--chhHHHHHHHHHhc
Confidence 55555555555667776665332221 1233444444443 3455667888899998754 33346666777776
Q ss_pred hhChHHH--hhhhHhhcccccCCCHHHHHHHHHHHhh----hcCcccHHHHHHHHHHHhhhcChHHHHHHHHHH
Q 040316 302 PKHLWAV--LENKDFVIKSLSDGDYNIKLESLRLLMS----MVSESNVAEISRVLINYALKSDPEFCNQILGSI 369 (957)
Q Consensus 302 ~~~p~~v--~~h~~~Il~cL~D~D~sIR~~ALeLL~~----Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI 369 (957)
..-|.+= ..|...|+..+-=.+.-||.-|+..|.. .-+.---+.|..-|...+.+.|.+.|..+...+
T Consensus 477 ~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 477 REGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred ccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 6544322 2244445544332346788889988843 334444556666677777888888887665544
No 43
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.26 E-value=4.5 Score=50.92 Aligned_cols=179 Identities=14% Similarity=0.165 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 040316 109 LITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELC 188 (957)
Q Consensus 109 LatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~ 188 (957)
.+.|.+.+ +.-|+++.-|+|+++..+.+.....+.|-|+..|.+ +..+....|.....-+||.++
T Consensus 494 ~~v~~l~~---~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~q------------las~~s~evl~llmE~Ls~vv 558 (1005)
T KOG2274|consen 494 ATVNALTM---DVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQ------------LASKSSDEVLVLLMEALSSVV 558 (1005)
T ss_pred HHHHhhcc---CCCCchhHHHHHHHHhccCceeccccchHHHHHHHH------------HcccccHHHHHHHHHHHHHHh
Confidence 34444444 446789999999999999999999999988888876 222333344444455555555
Q ss_pred hcCCCCc----cCchHHHHHHHhh-cCChHHHHHHHHHHHhhccCCh---HHHhHHHHHHHHHhhcCC--c----chHHH
Q 040316 189 LKDPRSY----LPLAPEFYKILVD-SKNNWLLIKVLKIFAKLATLEP---RLAKRVVEPICEFMRRTE--A----KSLLF 254 (957)
Q Consensus 189 ~~np~~~----l~Lap~L~~iL~~-~~npWlqIkILkLL~~l~p~ep---~L~~kLl~~L~~lL~~t~--a----~SVLy 254 (957)
+-+|+-- -++.|.++.++.. +.+|........+|..+..... ....++++.+.++|+.+. + -++..
T Consensus 559 ~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~ai 638 (1005)
T KOG2274|consen 559 KLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAI 638 (1005)
T ss_pred ccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHH
Confidence 5555411 2344555554332 3445433333344444332111 123445566666665432 1 24444
Q ss_pred HHHHHHHhhcCC--cHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHhh
Q 040316 255 ECIRTVLSSLSE--YESAVKLAVVKVREFL-VDDDPNLKYLGLQALSIIAP 302 (957)
Q Consensus 255 E~I~~Ii~~l~~--~~~li~l~v~~L~~fL-~ssDpNlrYvaL~~L~~Iv~ 302 (957)
+.+.|++...+. ...++..|...+.+.. .+.|...--.|=.+|..++.
T Consensus 639 dvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 639 DVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 555555544322 1233344444433332 34444444444444444443
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.18 E-value=0.026 Score=52.49 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=74.6
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH----HHh-hhhHhhcccccCCCHHHHHHHHHHHhhhcCcccH--H--
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW----AVL-ENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNV--A-- 344 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~----~v~-~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv--~-- 344 (957)
++..|..++.+.++.++..++.+|..++...|. ++. .-...++.+++|+|+.++..++..|..|+..... .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 566777788777889999999999998876443 233 3456777888899999999999999999876521 1
Q ss_pred ---HHHHHHHHHhhhcChHHHHHHHHHHHHHH
Q 040316 345 ---EISRVLINYALKSDPEFCNQILGSILSTC 373 (957)
Q Consensus 345 ---~IV~ELl~yl~~sD~~~r~elI~aI~~ic 373 (957)
.++..|.+++.+.+..++..++..+..+|
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 14567777777777778877777776665
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.08 E-value=0.054 Score=56.05 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhh-HhhcccccCCCHHHHHHHHHHHhhhcCc---cc
Q 040316 267 YESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENK-DFVIKSLSDGDYNIKLESLRLLMSMVSE---SN 342 (957)
Q Consensus 267 ~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~-~~Il~cL~D~D~sIR~~ALeLL~~Lvne---~N 342 (957)
++.++...+..+...|.+.++.+|..+|..|..++..+.--+..+. ..|+.|+.|+|+.||..|...+..+..+ +.
T Consensus 19 ~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 19 YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH
Confidence 4567777788888899999999999999999999998877777776 8888999999999999999999988776 44
Q ss_pred HHHHHHHHHHHhhhc
Q 040316 343 VAEISRVLINYALKS 357 (957)
Q Consensus 343 v~~IV~ELl~yl~~s 357 (957)
+..++.+++.++...
T Consensus 99 i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 99 IYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHhCc
Confidence 666777777776653
No 46
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=2.5 Score=51.15 Aligned_cols=332 Identities=14% Similarity=0.112 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhcCCChHHHH---HHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCc---hHH
Q 040316 34 SKAIEEIRREIKSTDLPTKS---AALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDT---PVI 107 (957)
Q Consensus 34 ~~elaEIR~eL~S~d~~~K~---~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~---dll 107 (957)
..-++-+-+++..+..+.+. +++.-+.. +..|.+.+...-...+++.+.++..++-+=-++.-+++... +.=
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~ 172 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVV--LSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE 172 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHH--HhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh
Confidence 33344444555555544332 23333332 34688888889999999999998876544333333444331 111
Q ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHH
Q 040316 108 LLITNQLRKDLNSSNQF----EVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGV 183 (957)
Q Consensus 108 lLatNtLkKDL~s~Np~----vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~v 183 (957)
...+-.+.+-..+.+.+ ..++|..+.+..-.+... +.++..+|.+..+..|..+-|--||..+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~E-------------Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFE-------------PYIVPILPSILTNFGDKINKVREAAVEA 239 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCC-------------chHHhhHHHHHHHhhccchhhhHHHHHH
Confidence 22223344444443332 233333333322221111 1233445566667777777787777776
Q ss_pred HHHhhhcCCC-CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHh
Q 040316 184 FCELCLKDPR-SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLS 262 (957)
Q Consensus 184 L~EI~~~np~-~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~ 262 (957)
.-.+...-+. .-..+.|.+..-|... -|- ......|.+.++..
T Consensus 240 ~kai~~~~~~~aVK~llpsll~~l~~~--kWr----------------------------------tK~aslellg~m~~ 283 (569)
T KOG1242|consen 240 AKAIMRCLSAYAVKLLLPSLLGSLLEA--KWR----------------------------------TKMASLELLGAMAD 283 (569)
T ss_pred HHHHHHhcCcchhhHhhhhhHHHHHHH--hhh----------------------------------hHHHHHHHHHHHHH
Confidence 6666543221 1112233332222211 221 11222222232222
Q ss_pred hcCCc-HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhh--hChHHHhhhhHhhcccccCCCHHHHHHHHHHHhh---
Q 040316 263 SLSEY-ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAP--KHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMS--- 336 (957)
Q Consensus 263 ~l~~~-~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~--~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~--- 336 (957)
.-+.. ...+..++..|..-+.++.|++|=.|..+|.++.. .+|. ++.+...++.|+.||.-+... +++.|..
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF 361 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPE-CLDSLGATTF 361 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHH-HHHhhcceee
Confidence 11110 11234456666677788899999999999988875 3455 899999999999999523332 3444443
Q ss_pred --hcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHH
Q 040316 337 --MVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIA 414 (957)
Q Consensus 337 --Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi 414 (957)
-+++..+.-|+.-|..=+...+.+.++..+.-|..+|.. ++|..|....|-+|+-- +-..+.+.
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L-----veDp~~lapfl~~Llp~--------lk~~~~d~- 427 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL-----VEDPKDLAPFLPSLLPG--------LKENLDDA- 427 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh-----hcCHHHHhhhHHHHhhH--------HHHHhcCC-
Confidence 367788888888888888888999999999999988864 55777777666555431 11222222
Q ss_pred HhcCcchHHHHHHHHHHhcC
Q 040316 415 MRVKDVRPALVHVCRNLLID 434 (957)
Q Consensus 415 ~rvp~ir~~av~~l~~lL~d 434 (957)
+|++|..+.+.+..++.+
T Consensus 428 --~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 428 --VPEVRAVAARALGALLER 445 (569)
T ss_pred --ChhHHHHHHHHHHHHHHH
Confidence 577887777776666643
No 47
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.83 E-value=0.57 Score=51.61 Aligned_cols=138 Identities=14% Similarity=0.249 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhc--CCChhHHHHHHHHHHHhh
Q 040316 111 TNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLE--SSEPVILSAVVGVFCELC 188 (957)
Q Consensus 111 tNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~--D~D~sVv~AAv~vL~EI~ 188 (957)
+..+.+=|.++++.++--||.+|.++....=-. ..+..+++++.+.+. .-|..|..+++.+|..+.
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~------------~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVNDENQ------------EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT 123 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH------------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC
Confidence 456666688899999999999999886532111 122334445555333 247889999999999997
Q ss_pred hcCCC--CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHH-----HHHHHHHhhcCCcchHHHHHHHHHH
Q 040316 189 LKDPR--SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRV-----VEPICEFMRRTEAKSLLFECIRTVL 261 (957)
Q Consensus 189 ~~np~--~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kL-----l~~L~~lL~~t~a~SVLyE~I~~Ii 261 (957)
-.+.. .....+|.|+++|.. .+.=.+..+||+|..++- +|...+.+ ...+..++++..+..++++++..+-
T Consensus 124 v~~~~~~~l~~~i~~ll~LL~~-G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 124 VTNDYHHMLANYIPDLLSLLSS-GSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred CCcchhhhHHhhHHHHHHHHHc-CChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 65432 223457888888876 577788999999999875 44444433 3556677777667777777766544
Q ss_pred h
Q 040316 262 S 262 (957)
Q Consensus 262 ~ 262 (957)
.
T Consensus 202 n 202 (254)
T PF04826_consen 202 N 202 (254)
T ss_pred H
Confidence 3
No 48
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.80 E-value=7.4 Score=48.17 Aligned_cols=263 Identities=14% Similarity=0.163 Sum_probs=157.3
Q ss_pred HHHHhhccC--ChHHHhHHHHHHHHHhhc-CCcchHHHHHHHHHHhhcCC-cHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q 040316 220 KIFAKLATL--EPRLAKRVVEPICEFMRR-TEAKSLLFECIRTVLSSLSE-YESAVKLAVVKVREFLVDDDPNLKYLGLQ 295 (957)
Q Consensus 220 kLL~~l~p~--ep~L~~kLl~~L~~lL~~-t~a~SVLyE~I~~Ii~~l~~-~~~li~l~v~~L~~fL~ssDpNlrYvaL~ 295 (957)
|+++++... +.++.+.+++.+..-++. +...+|.+-+.-++...+.. ......+++..+...|.++.+++|--|+.
T Consensus 742 ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaad 821 (1172)
T KOG0213|consen 742 RIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAAD 821 (1172)
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHH
Confidence 556666554 567777888887777754 34567888888887765432 11223345555556679999999999999
Q ss_pred HHHHHhhhCh----HHHhhhhH-hhcccccCCCHHHHHHHHHHHhhhcCcc-------cHHHHHHHHHHHhhhcChHHHH
Q 040316 296 ALSIIAPKHL----WAVLENKD-FVIKSLSDGDYNIKLESLRLLMSMVSES-------NVAEISRVLINYALKSDPEFCN 363 (957)
Q Consensus 296 ~L~~Iv~~~p----~~v~~h~~-~Il~cL~D~D~sIR~~ALeLL~~Lvne~-------Nv~~IV~ELl~yl~~sD~~~r~ 363 (957)
.+..|+..-. .-.-.|.. .+++.|...++.+---.|.-+..++|-- =+..|+..|.-.+.+-...++.
T Consensus 822 lis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqe 901 (1172)
T KOG0213|consen 822 LISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQE 901 (1172)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHH
Confidence 9998876422 22344554 4566788877877666666666666543 4677888888888777777888
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHHHhhcc---CCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCC
Q 040316 364 QILGSILSTCCRNLYEVIVDFDWYASLLGEMVRI---PHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGN 440 (957)
Q Consensus 364 elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~---~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~ 440 (957)
..|.-++.||.+ .+++++-.+|- .+.++|+.+ -...+.....+.+=-|.. .+-+. ..+..+| +. ++.
T Consensus 902 n~IdLvg~Iadr-gpE~v~aREWM-RIcfeLlelLkahkK~iRRaa~nTfG~Iak---aIGPq--dVLatLl-nn--Lkv 971 (1172)
T KOG0213|consen 902 NCIDLVGTIADR-GPEYVSAREWM-RICFELLELLKAHKKEIRRAAVNTFGYIAK---AIGPQ--DVLATLL-NN--LKV 971 (1172)
T ss_pred HHHHHHHHHHhc-CcccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---hcCHH--HHHHHHH-hc--chH
Confidence 888888888876 56778777884 333333332 111111111111111111 11111 0112122 10 100
Q ss_pred C-chHHHH-HHHhhhhccCCCCCCCHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 441 P-FLHRIL-SAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 441 ~-~~~~~l-~a~aWIlGEY~~~i~~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
. ....+. ..++-|+||||. |-.++-.|+. -+..-...||.-+|-|+.-+|-+
T Consensus 972 qeRq~RvcTtvaIaIVaE~c~----pFtVLPalmn-eYrtPe~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen 972 QERQNRVCTTVAIAIVAETCG----PFTVLPALMN-EYRTPEANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred HHHHhchhhhhhhhhhhhhcC----chhhhHHHHh-hccCchhHHHHhHHHHHHHHHHH
Confidence 0 011222 356678999987 5566666665 36666778999999888877755
No 49
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=7.6 Score=47.88 Aligned_cols=316 Identities=16% Similarity=0.097 Sum_probs=168.8
Q ss_pred hhhHHHHHhhcCCCchH-HHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh-h------hHH--
Q 040316 90 KIGYHAVTQSFNDDTPV-ILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS-N------AVR-- 159 (957)
Q Consensus 90 RlGYLaas~~~~~~~dl-llLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~-~------AvR-- 159 (957)
++.|+|+.- .+=|. .|=++|.|.-- ..+.-.+--+++.+|-+=. .++..-+...|++=|.+ + |+.
T Consensus 61 KLlyI~llg---~dIdFGhmEaV~LLss~-kysEKqIGYl~is~L~n~n-~dl~klvin~iknDL~srn~~fv~LAL~~I 135 (938)
T KOG1077|consen 61 KLLYIYLLG---YDIDFGHMEAVNLLSSN-KYSEKQIGYLFISLLLNEN-SDLMKLVINSIKNDLSSRNPTFVCLALHCI 135 (938)
T ss_pred HHHHHHHhc---CccccchHHHHHHhhcC-CccHHHHhHHHHHHHHhcc-hHHHHHHHHHHHhhhhcCCcHHHHHHHHHH
Confidence 456666652 12221 34455554321 1122344445666555432 55666666666654444 1 221
Q ss_pred ----------HHHHHHHhhhcCC--ChhHHHHHHHHHHHhhhcCCCCccC--chHHHHHHHhhcCC--hHHHHHHHHHHH
Q 040316 160 ----------VCFKRLVENLESS--EPVILSAVVGVFCELCLKDPRSYLP--LAPEFYKILVDSKN--NWLLIKVLKIFA 223 (957)
Q Consensus 160 ----------~~~~kL~elL~D~--D~sVv~AAv~vL~EI~~~np~~~l~--Lap~L~~iL~~~~n--pWlqIkILkLL~ 223 (957)
...+.+..+|... -..|--.|.-.|..+.++.|+...+ ++.++.++|.+.-- --..+.+|.++.
T Consensus 136 ~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lv 215 (938)
T KOG1077|consen 136 ANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALV 215 (938)
T ss_pred HhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHH
Confidence 1134566667643 4456555555666788888876532 45666777754210 112345555555
Q ss_pred hhccCChHH-----HhHHHHHHHH----Hhhc----CCcchHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHhhcCCC--
Q 040316 224 KLATLEPRL-----AKRVVEPICE----FMRR----TEAKSLLFECIRTVLSSLS--EYESAVKLAVVKVREFLVDDD-- 286 (957)
Q Consensus 224 ~l~p~ep~L-----~~kLl~~L~~----lL~~----t~a~SVLyE~I~~Ii~~l~--~~~~li~l~v~~L~~fL~ssD-- 286 (957)
++.|.+-.. ..++...+.. +... -+++=+....++.. +.++ ..+.......+.|.+.|+-.+
T Consensus 216 k~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlL-q~~p~~~D~~~r~~l~evl~~iLnk~~~~ 294 (938)
T KOG1077|consen 216 KKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLL-QIYPTPEDPSTRARLNEVLERILNKAQEP 294 (938)
T ss_pred HcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHH-HhCCCCCCchHHHHHHHHHHHHHhccccC
Confidence 555432110 0111111110 0000 02233333333332 2222 122333334455555542111
Q ss_pred --------chHHHHHH-HHHHHHhh--hChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhh
Q 040316 287 --------PNLKYLGL-QALSIIAP--KHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYAL 355 (957)
Q Consensus 287 --------pNlrYvaL-~~L~~Iv~--~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~ 355 (957)
.|.+-.+| .+++.+.. ..|+++.+....+=..|.+..+.||..|||-+..||+.+-..+.|+.=.+.+.
T Consensus 295 ~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii 374 (938)
T KOG1077|consen 295 PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTII 374 (938)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 23333333 33333333 44788888888888889998899999999999999999888888765444443
Q ss_pred -----hcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhc
Q 040316 356 -----KSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRV 417 (957)
Q Consensus 356 -----~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rv 417 (957)
+.|.++|+.++.-+..+|-.. +..-.|+-|++.+..+...+.++++.-+.=+..++
T Consensus 375 ~sLkterDvSirrravDLLY~mcD~~------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 375 NSLKTERDVSIRRRAVDLLYAMCDVS------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred HHhccccchHHHHHHHHHHHHHhchh------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 358899999999888888652 33448888888777766666666655544444443
No 50
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.61 E-value=1.1 Score=55.89 Aligned_cols=123 Identities=15% Similarity=0.044 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHH
Q 040316 250 KSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLE 329 (957)
Q Consensus 250 ~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ 329 (957)
...-.++++.|+..+...+.+-.++... .+++.+.|.++|=+.-..+...++.+|+..---...|..=+.||+++||-.
T Consensus 33 ~~~kidAmK~iIa~M~~G~dmssLf~dV-iK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~ 111 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGEDMSSLFPDV-IKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGF 111 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCChHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 4557778887777655444443444444 455558888988888888888888889877777788888888999999999
Q ss_pred HHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHH
Q 040316 330 SLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTC 373 (957)
Q Consensus 330 ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic 373 (957)
||..+..|=.++=+..++.-+.+.+.+..+..|+.++.+|+.+-
T Consensus 112 AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 112 ALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 99999888777777778888888888888888888888887653
No 51
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.47 E-value=11 Score=47.91 Aligned_cols=399 Identities=12% Similarity=0.124 Sum_probs=216.2
Q ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcCCCC----cchhHHHHHHhh---cCCCccchhhhHHHHHhhcCCC---
Q 040316 35 KAIEEIRREIKST-DLPTKSAALRKLSYLSSLHGAD----MSFAAFHAVEVM---SSPQFFYKKIGYHAVTQSFNDD--- 103 (957)
Q Consensus 35 ~elaEIR~eL~S~-d~~~K~~AL~KLIYL~ML~G~D----mS~~~f~VVelm---sS~~~~~KRlGYLaas~~~~~~--- 103 (957)
+-++++-+.|..+ .+..-+++++-|-.+.--.|+. .++..+-++... ...+=+.+.-..-++..++...
T Consensus 212 ~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 212 ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 3344555555544 3334444444443322113554 344444444444 4455455544444444444322
Q ss_pred -----chHHHHHHHHHHHHhcCC---------------------CH---------HHHHHHHHhhccCCc------hhhH
Q 040316 104 -----TPVILLITNQLRKDLNSS---------------------NQ---------FEVSLALECLSRIGN------VDLA 142 (957)
Q Consensus 104 -----~dlllLatNtLkKDL~s~---------------------Np---------~vr~LALr~Ls~I~t------peLa 142 (957)
+++.-|+++-|.-|=+.. ++ -+|--|..|+..+.+ |++.
T Consensus 292 i~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~ 371 (1233)
T KOG1824|consen 292 ILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFY 371 (1233)
T ss_pred hcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 556667777776654410 11 357777777777654 4455
Q ss_pred hhhHHHHHHhhhh--hhHHH--------------------------------------------HHHHHHhhhcCCChhH
Q 040316 143 RDLTPEVFTLLSS--NAVRV--------------------------------------------CFKRLVENLESSEPVI 176 (957)
Q Consensus 143 ~~L~~~V~klL~~--~AvR~--------------------------------------------~~~kL~elL~D~D~sV 176 (957)
+.+.|.|+..++. +.|+. +.+-|...|.++..-.
T Consensus 372 q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt 451 (1233)
T KOG1824|consen 372 QTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKT 451 (1233)
T ss_pred HHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccc
Confidence 6666777776666 22211 0111222233333333
Q ss_pred HHHHHHHHHHhhhcCCCC----ccCchHHHHHHHhh--cCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcC---
Q 040316 177 LSAVVGVFCELCLKDPRS----YLPLAPEFYKILVD--SKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRT--- 247 (957)
Q Consensus 177 v~AAv~vL~EI~~~np~~----~l~Lap~L~~iL~~--~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t--- 247 (957)
...++.++.|+...-|.. .-.++|.+...|.+ +.++--.-.+..+...++-..|....-++.++.+++...
T Consensus 452 ~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d 531 (1233)
T KOG1824|consen 452 RQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGD 531 (1233)
T ss_pred hhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcC
Confidence 445677788887777653 23467777777765 222322222223333344455665555555555555331
Q ss_pred CcchHHHHHHHHHHhhc------------CCcHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHhhhChHHHhhhhH-
Q 040316 248 EAKSLLFECIRTVLSSL------------SEYESAVKLAVVKVREFL-VDDDPNLKYLGLQALSIIAPKHLWAVLENKD- 313 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l------------~~~~~li~l~v~~L~~fL-~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~- 313 (957)
+-+=|.+|+..+..+.. ...+..-.+..-.+.+|- .+.|+++|--++.+|..++....+.......
T Consensus 532 ~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~ 611 (1233)
T KOG1824|consen 532 PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPR 611 (1233)
T ss_pred chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 33456666666554431 112233333444455554 5789999999999999999877666555443
Q ss_pred ---hhccccc-CCCHHHHHHHHHHHhhhcC----cccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchH
Q 040316 314 ---FVIKSLS-DGDYNIKLESLRLLMSMVS----ESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFD 385 (957)
Q Consensus 314 ---~Il~cL~-D~D~sIR~~ALeLL~~Lvn----e~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfe 385 (957)
.+...|. ++-....-+||.++..-.. ..|...|+.+|..|+.+.....|.....++..+.. +|.-.-..+
T Consensus 612 ~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~--~~~~~~~~~ 689 (1233)
T KOG1824|consen 612 TLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVK--NYSDSIPAE 689 (1233)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccccHH
Confidence 3444444 4433445566666654322 56788999999999999888888887777766644 343222223
Q ss_pred HHHHHHHHh---hccCCcchHHHHHHHHHHHHHhcCc----chHHHHHHHHHHhcCC
Q 040316 386 WYASLLGEM---VRIPHCQKGEEIEHQIIDIAMRVKD----VRPALVHVCRNLLIDP 435 (957)
Q Consensus 386 WyvdvLl~L---l~~~~~~v~~eI~~~L~dIi~rvp~----ir~~av~~l~~lL~d~ 435 (957)
-+=.+|.++ +....-++.+..+..+..++...|. ++.-++..++.++..|
T Consensus 690 ~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 690 LLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 333444443 3333445566666677777776664 3444555566666544
No 52
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.46 E-value=1.3 Score=57.00 Aligned_cols=255 Identities=19% Similarity=0.134 Sum_probs=149.7
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcC-------CCCcc-CchHHHHHHHhhcCChHHHHHHHHHHHhhccCC
Q 040316 158 VRVCFKRLVENLESSEPVILSAVVGVFCELCLKD-------PRSYL-PLAPEFYKILVDSKNNWLLIKVLKIFAKLATLE 229 (957)
Q Consensus 158 vR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n-------p~~~l-~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~e 229 (957)
+-.+.|-+..+++|+++.|.++|+-.++++...- ...|. -+.|.|-+++.++.++-..+..-.-|+.++.
T Consensus 460 LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~-- 537 (1431)
T KOG1240|consen 460 LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK-- 537 (1431)
T ss_pred HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHH--
Confidence 4456788899999999999999999999997631 11232 1457777777665555444444444443332
Q ss_pred hHHHhHHHHHHHHHhhcCC-cchHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC--
Q 040316 230 PRLAKRVVEPICEFMRRTE-AKSLLFECIRTVLSSL--SEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKH-- 304 (957)
Q Consensus 230 p~L~~kLl~~L~~lL~~t~-a~SVLyE~I~~Ii~~l--~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~-- 304 (957)
.+-++++.-.. ++.+. -+.---| +..... .+...++..+-+....||.+++|++|-.-|.+|..|+.-+
T Consensus 538 --tA~rFle~~q~-~~~~g~~n~~nse---t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 538 --TAYRFLELTQE-LRQAGMLNDPNSE---TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred --HHHHHHHHHHH-HHhcccccCcccc---cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 11222221111 11100 0000000 000000 1112445555666678888899999999999988887533
Q ss_pred ---hHHHhhhhHhhcccccCCCHHHHHHHHHHHhh---hcCcccHHHHHHHHHH-HhhhcChHHHHHHHHHHHHHHhhhh
Q 040316 305 ---LWAVLENKDFVIKSLSDGDYNIKLESLRLLMS---MVSESNVAEISRVLIN-YALKSDPEFCNQILGSILSTCCRNL 377 (957)
Q Consensus 305 ---p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~---Lvne~Nv~~IV~ELl~-yl~~sD~~~r~elI~aI~~ic~~~~ 377 (957)
-+++-.|.-+| |+|.|...|--=.|-+.+ .+-...+.+++-=|+. -+.+.++.....++.++-.+|....
T Consensus 612 ~ksND~iLshLiTf---LNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 612 EKSNDVILSHLITF---LNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred cccccchHHHHHHH---hcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 34555565554 799999999888888874 4566767775554444 4555555666777777776776432
Q ss_pred cccccchHHHH---HHHHHhhccCCcchHHHHHHHHHHHHHh----------cCcchHHHHHH
Q 040316 378 YEVIVDFDWYA---SLLGEMVRIPHCQKGEEIEHQIIDIAMR----------VKDVRPALVHV 427 (957)
Q Consensus 378 y~~~~dfeWyv---dvLl~Ll~~~~~~v~~eI~~~L~dIi~r----------vp~ir~~av~~ 427 (957)
. +..-++ +...-|+..++..+...++..|..+.++ .|-+|+++-+-
T Consensus 689 ---l-~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~ 747 (1431)
T KOG1240|consen 689 ---L-RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERP 747 (1431)
T ss_pred ---c-chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhcc
Confidence 1 112233 3344566777777877777777766654 25566665443
No 53
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.82 Score=56.31 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=75.8
Q ss_pred chhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHH--HHHHHHHHHhcCCCHHHHHHHHHhhccCCchh-------h
Q 040316 71 SFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVIL--LITNQLRKDLNSSNQFEVSLALECLSRIGNVD-------L 141 (957)
Q Consensus 71 S~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlll--LatNtLkKDL~s~Np~vr~LALr~Ls~I~tpe-------L 141 (957)
..++..+.++....+...++.+-+.+..+++-+.+... =.++.|+-=+.|.||.+++.|+++|..|...+ +
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 34566677777777777777666666666665544222 22344444455799999999999999886433 3
Q ss_pred HhhhHHHHHHhhhhhh------H---------------HHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCC
Q 040316 142 ARDLTPEVFTLLSSNA------V---------------RVCFKRLVENLESSEPVILSAVVGVFCELCLKDPR 193 (957)
Q Consensus 142 a~~L~~~V~klL~~~A------v---------------R~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~ 193 (957)
...++...+..++.+. + ..+..++...|...++.|+.+++.++......-+.
T Consensus 200 ~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 200 NPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 3444444444444320 0 01233455566678888888888888877665443
No 54
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.19 E-value=8.8 Score=46.80 Aligned_cols=261 Identities=17% Similarity=0.166 Sum_probs=140.1
Q ss_pred hHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCc--hhhHhhhHHHHH
Q 040316 73 AAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGN--VDLARDLTPEVF 150 (957)
Q Consensus 73 ~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~t--peLa~~L~~~V~ 150 (957)
.|-.|+.... .+...||++=-.+..||..-|++.--++|++..=+.+.+.-||--|++.|..++- ++.+.-++
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva---- 98 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA---- 98 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH----
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH----
Confidence 3444455444 3578999999999999999999999999999998899999999999999999884 45544333
Q ss_pred HhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHh--hcCChHHHHHHHHHHHh-hcc
Q 040316 151 TLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILV--DSKNNWLLIKVLKIFAK-LAT 227 (957)
Q Consensus 151 klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~--~~~npWlqIkILkLL~~-l~p 227 (957)
+-|.++|..+|+..+.++=++|.++...+|+.. ...+|..+. ...++-.--++|+++.. +.+
T Consensus 99 ------------DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t---L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 99 ------------DVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT---LTGLFSQIESSKSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp ------------HHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHH---HS-HHHHHHHHHHHHHHGGG
T ss_pred ------------HHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcccCchHHHHHHHHHHHHHHhh
Confidence 335667777888888888888888888888743 233454443 23566677778887743 333
Q ss_pred CC-------hHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCC-----cHHHHHHHHHHHHHh------hcCCCchH
Q 040316 228 LE-------PRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSE-----YESAVKLAVVKVREF------LVDDDPNL 289 (957)
Q Consensus 228 ~e-------p~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~-----~~~li~l~v~~L~~f------L~ssDpNl 289 (957)
.. .+..+-+.+.+..+|+- -.+.-|+-+-.++..+.- ..+-.+..++.+... +..+|+..
T Consensus 164 l~~~~~~p~~E~e~~i~~~ikkvL~D--VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~ 241 (556)
T PF05918_consen 164 LKPELLTPQKEMEEFIVDEIKKVLQD--VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPES 241 (556)
T ss_dssp S-TTTS---HHHHHHHHHHHHHHCTT----HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHH
T ss_pred CcHHHhhchHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHH
Confidence 21 12223344445555543 123444433334433221 222223333333321 12233331
Q ss_pred --HHHHHHHHH--HHhh--hChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcc-------cHHHHHHHHHHHhh
Q 040316 290 --KYLGLQALS--IIAP--KHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES-------NVAEISRVLINYAL 355 (957)
Q Consensus 290 --rYvaL~~L~--~Iv~--~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~-------Nv~~IV~ELl~yl~ 355 (957)
|++.+.... .... ....+|.-....|+..+++-+...|..-|.++.-|+.-. .+..|+.-|+.|+.
T Consensus 242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 242 IDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 121111111 1111 123567667788888888877777777777766665432 23344455555555
No 55
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.06 E-value=1.6 Score=54.53 Aligned_cols=309 Identities=16% Similarity=0.167 Sum_probs=169.3
Q ss_pred CChhHHHHHHHHHHHhhhcCCC----CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChH----HHhHHHHHHHHH
Q 040316 172 SEPVILSAVVGVFCELCLKDPR----SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPR----LAKRVVEPICEF 243 (957)
Q Consensus 172 ~D~sVv~AAv~vL~EI~~~np~----~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~----L~~kLl~~L~~l 243 (957)
+.-.++..++.+|..++....- .-..+++.|+++|.. .+.=+++..+.+|.+++-.... ....+++.|..+
T Consensus 261 kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 261 KQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR-ENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 3445666788889888874321 113467888888865 4666888888999998865322 223467888888
Q ss_pred hhcCCcchHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh--HHHh--hhhHh
Q 040316 244 MRRTEAKSLLFECIRTVLSSLSEYESAVK-----LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL--WAVL--ENKDF 314 (957)
Q Consensus 244 L~~t~a~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p--~~v~--~h~~~ 314 (957)
+.+ .+.-++-.+++++++ ++..+.+.. -++.+|..+|. +++.+.+++..|+.|..... ..|. .....
T Consensus 340 l~s-~~~~l~~~aLrlL~N-LSfd~~~R~~mV~~GlIPkLv~LL~--d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 340 LPS-ENEDLVNVALRLLFN-LSFDPELRSQMVSLGLIPKLVELLK--DPNFREVALKILYNLSMDDEARSMFAYTDCIPQ 415 (708)
T ss_pred hcC-CCHHHHHHHHHHHHH-hCcCHHHHHHHHHCCCcHHHHHHhC--CCchHHHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence 876 445677778887776 454444432 25678888885 57889999999999987432 2222 23444
Q ss_pred hccc-ccCCCHHHHHHHHHHHhhhc-CcccHHHHHH-----HHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHH
Q 040316 315 VIKS-LSDGDYNIKLESLRLLMSMV-SESNVAEISR-----VLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWY 387 (957)
Q Consensus 315 Il~c-L~D~D~sIR~~ALeLL~~Lv-ne~Nv~~IV~-----ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWy 387 (957)
++.+ +..++.-+....+-++..++ ++.|++.|++ .|++.+.+.-...--++|+.| +++.+..-..|.=|
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNi----S~h~~~~k~~f~~~ 491 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNI----SQHDGPLKELFVDF 491 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHH----HhcCchHHHHHHHH
Confidence 4444 33455667777777777765 5677776664 233333322222222333333 33322222233335
Q ss_pred HHHHHHhhccC-CcchHHHHHHHHHHHHHhcCcchH-----HHHHHHHHHhcCCcccCCCchHHH-HHHHhhhhccCCCC
Q 040316 388 ASLLGEMVRIP-HCQKGEEIEHQIIDIAMRVKDVRP-----ALVHVCRNLLIDPALLGNPFLHRI-LSAAAWVSGEYVEF 460 (957)
Q Consensus 388 vdvLl~Ll~~~-~~~v~~eI~~~L~dIi~rvp~ir~-----~av~~l~~lL~d~~~l~~~~~~~~-l~a~aWIlGEY~~~ 460 (957)
|.-|+.++... +....-|++-.+.++....-+... .++..+..+|.. ....+++ +.+++ ++|--+..
T Consensus 492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~-----g~~~dDl~LE~Vi-~~gtla~d 565 (708)
T PF05804_consen 492 IGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP-----GASEDDLLLEVVI-LLGTLASD 565 (708)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC-----CCCChHHHHHHHH-HHHHHHCC
Confidence 55555555443 223344444444444332111111 223334444432 1223344 45554 46654321
Q ss_pred ------CC--CHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 461 ------SR--NPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 461 ------i~--~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
+. .-...+-.|+. -..++.+.-.|++-++-++..+
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~--~kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLN--AKQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHH--hhCchHHHHHHHHHHHHHHHcC
Confidence 11 11222223444 3467888888888887777655
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=7.5 Score=48.28 Aligned_cols=295 Identities=14% Similarity=0.165 Sum_probs=151.3
Q ss_pred HHhhhcCCChhHHHHHHHHHHHhhhcC-CC-CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccC-ChH-HHhHHHHHH
Q 040316 165 LVENLESSEPVILSAVVGVFCELCLKD-PR-SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL-EPR-LAKRVVEPI 240 (957)
Q Consensus 165 L~elL~D~D~sVv~AAv~vL~EI~~~n-p~-~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~-ep~-L~~kLl~~L 240 (957)
+...|....|.+-++|-.++-.|+.-. |. .|..+++.+.+...+....-+.--.|..++..|.. +|+ +..+..+.+
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL 174 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL 174 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence 334566666666666655555554422 33 23223333333333333334445566777777653 554 333444555
Q ss_pred HHHhh---cC-CcchHHHHHHHHHHhhcC------CcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh
Q 040316 241 CEFMR---RT-EAKSLLFECIRTVLSSLS------EYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE 310 (957)
Q Consensus 241 ~~lL~---~t-~a~SVLyE~I~~Ii~~l~------~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~ 310 (957)
+.+++ ++ ++..|-+.+.++....+- +++.-+.-+.+....--.++|..++-.|+.+|.+|+..+.+++.+
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~ 254 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP 254 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65553 21 345677777776654321 111111111111222225789999999999999999988877777
Q ss_pred hhHh-hc----ccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhc----ChHHHHHHH----HHHHHHHhhhh
Q 040316 311 NKDF-VI----KSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKS----DPEFCNQIL----GSILSTCCRNL 377 (957)
Q Consensus 311 h~~~-Il----~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~s----D~~~r~elI----~aI~~ic~~~~ 377 (957)
|... +| ...++++..|+.+++|-=..+|.+++ +|.-|.-+..... ...|.+.++ --++.+-.+..
T Consensus 255 yM~~alfaitl~amks~~deValQaiEFWsticeEEi--D~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI--DLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 6654 22 23457778999999999999999885 3333333333221 123444322 23333323311
Q ss_pred cccccchHHHHH----HHHHhh-ccCCcchHHHHHHHHHHHHHhcCcchH--HHHHHHHHHhcCCcc--cC---------
Q 040316 378 YEVIVDFDWYAS----LLGEMV-RIPHCQKGEEIEHQIIDIAMRVKDVRP--ALVHVCRNLLIDPAL--LG--------- 439 (957)
Q Consensus 378 y~~~~dfeWyvd----vLl~Ll-~~~~~~v~~eI~~~L~dIi~rvp~ir~--~av~~l~~lL~d~~~--l~--------- 439 (957)
+...+-+|-.. +.+.|. ...++.+..-++-.+.+-+ +.|+.|. .++-..-.++..+.- +.
T Consensus 333 -e~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i-~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ 410 (859)
T KOG1241|consen 333 -EDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENI-QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS 410 (859)
T ss_pred -CCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhc-CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence 12234457552 233322 3345555555555555433 2354432 222222222221110 00
Q ss_pred -----CCchHHHHHHHhhhhccCCCCCCC
Q 040316 440 -----NPFLHRILSAAAWVSGEYVEFSRN 463 (957)
Q Consensus 440 -----~~~~~~~l~a~aWIlGEY~~~i~~ 463 (957)
+...--++..++|.+|--++.++.
T Consensus 411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 411 IINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred HHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 001122567899999998887664
No 57
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.83 E-value=8.7 Score=50.93 Aligned_cols=143 Identities=14% Similarity=0.159 Sum_probs=115.6
Q ss_pred cchHHHHHHHHHHhhcCCcHH---HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh--hhHhhcccccCCC
Q 040316 249 AKSLLFECIRTVLSSLSEYES---AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE--NKDFVIKSLSDGD 323 (957)
Q Consensus 249 a~SVLyE~I~~Ii~~l~~~~~---li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~--h~~~Il~cL~D~D 323 (957)
..-+.|+.+..|..++..+.+ ...-+++.|..+|..+.+++|--||.+++.|+..+|.++.. -+..|-..+.|.-
T Consensus 789 s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dss 868 (1692)
T KOG1020|consen 789 SRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSS 868 (1692)
T ss_pred CccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccch
Confidence 345667777776665433223 23557777778888889999999999999999999987654 4566777888988
Q ss_pred HHHHHHHHHHHh--hhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhc
Q 040316 324 YNIKLESLRLLM--SMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVR 396 (957)
Q Consensus 324 ~sIR~~ALeLL~--~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~ 396 (957)
+++|-.||||+- -|+.++-+..+...+.+-+.+.....|..+|+-+..+|.. .+||.-.++++.++++
T Consensus 869 asVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e-----~pdf~~i~~~cakmlr 938 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEE-----TPDFSKIVDMCAKMLR 938 (1692)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh-----CCChhhHHHHHHHHHH
Confidence 999999999986 5778898999999999999988899999999999999986 2688888998888875
No 58
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.75 E-value=0.33 Score=53.44 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=75.8
Q ss_pred HHHHHHHhhc-CCCchHHHHHHHHHHHHhhh--ChHHHhh--hhHhhcccccCCCHHHHHHHHHHHhhhcCc-ccHHHH-
Q 040316 274 AVVKVREFLV-DDDPNLKYLGLQALSIIAPK--HLWAVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMVSE-SNVAEI- 346 (957)
Q Consensus 274 ~v~~L~~fL~-ssDpNlrYvaL~~L~~Iv~~--~p~~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne-~Nv~~I- 346 (957)
-.++|..+|. +.||-++..++-++...+.. ..+++.. -...|...|++|++.+|.+||..|..|+.. +|...|
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 3466777774 67999999999999997642 1234433 246677789999999999999999988654 454333
Q ss_pred --HHHHHHHhhh--cChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCc
Q 040316 347 --SRVLINYALK--SDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHC 400 (957)
Q Consensus 347 --V~ELl~yl~~--sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~ 400 (957)
+.++.+-+.. .|...+...++.+..++..+.|... ..-|+..++.|+..+..
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~--l~~~i~~ll~LL~~G~~ 148 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM--LANYIPDLLSLLSSGSE 148 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh--HHhhHHHHHHHHHcCCh
Confidence 2222222222 2445666666666666544333221 12255555555554433
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.46 E-value=0.18 Score=47.45 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcc----cccCCCHHHHHHHHHHHh
Q 040316 269 SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIK----SLSDGDYNIKLESLRLLM 335 (957)
Q Consensus 269 ~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~----cL~D~D~sIR~~ALeLL~ 335 (957)
..+..++..+...+.++|+.+||.++.+|..|++..+..+-+|...||. .+.|+|.+||.-| ++|-
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld 92 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLD 92 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHH
Confidence 3455666777777799999999999999999999887777777766664 5679999999877 5543
No 60
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=18 Score=44.50 Aligned_cols=260 Identities=13% Similarity=0.125 Sum_probs=146.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc------cCchHHHHHHHhhc--CChHH-HHHHHHHHHhhccCCh
Q 040316 160 VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY------LPLAPEFYKILVDS--KNNWL-LIKVLKIFAKLATLEP 230 (957)
Q Consensus 160 ~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~------l~Lap~L~~iL~~~--~npWl-qIkILkLL~~l~p~ep 230 (957)
.||.+.++.|.|.+..|-.||+.++.-.....|..- ..+.-..|..++.. .-.|. -+..-|+|+.+.....
T Consensus 234 ~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 234 ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 367888888889999999999888888877775311 22333334333321 12332 1333344444433222
Q ss_pred HHHhHHHHHHHH-Hhh-----cCC--cchHHHHHHHHHHh---hcCCc--H-------HHH-HHHHHHHHHhhcCCCchH
Q 040316 231 RLAKRVVEPICE-FMR-----RTE--AKSLLFECIRTVLS---SLSEY--E-------SAV-KLAVVKVREFLVDDDPNL 289 (957)
Q Consensus 231 ~L~~kLl~~L~~-lL~-----~t~--a~SVLyE~I~~Ii~---~l~~~--~-------~li-~l~v~~L~~fL~ssDpNl 289 (957)
.+ +.+.|.. +|+ ++. .+.-+|..-- ... |..+. + +++ .-++..+..=|++.--++
T Consensus 314 e~---i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge-wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EV 389 (823)
T KOG2259|consen 314 EI---IQQTLDKKLMSRLRRKRTAHKRPKALYSSGE-WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEV 389 (823)
T ss_pred HH---HHHHHHHHHhhhhhhhhhcccchHHHHhcCC-cccCccccccCchhhccccccccccccccceeeeechHHHHHH
Confidence 22 1122221 121 110 1111221100 000 00000 0 111 112222222235555789
Q ss_pred HHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccH-HHHHHHHHHHhhhcChHHHHHHHHH
Q 040316 290 KYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNV-AEISRVLINYALKSDPEFCNQILGS 368 (957)
Q Consensus 290 rYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv-~~IV~ELl~yl~~sD~~~r~elI~a 368 (957)
|-.|..+|..++.+.|.+-..-.+.++..++|.+.-+|.+|+.-|..+.+.--+ ++.++.+++-+.+...+.|..+-.
T Consensus 390 R~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~e- 468 (823)
T KOG2259|consen 390 RRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRE- 468 (823)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999988766333 346777778888888887766544
Q ss_pred HHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHH
Q 040316 369 ILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVC 428 (957)
Q Consensus 369 I~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l 428 (957)
++..| .++-..=++-|+.-|++-+.. -..-.++|+.-+..|..+++..-...+..+
T Consensus 469 lL~~~---~~~d~~~i~m~v~~lL~~L~k-yPqDrd~i~~cm~~iGqnH~~lv~s~m~rf 524 (823)
T KOG2259|consen 469 LLKNA---RVSDLECIDMCVAHLLKNLGK-YPQDRDEILRCMGRIGQNHRRLVLSNMGRF 524 (823)
T ss_pred HHHhc---CCCcHHHHHHHHHHHHHHhhh-CCCCcHHHHHHHHHHhccChhhHHHHHHHH
Confidence 43332 232222223344444333221 122467899999999988876544444433
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.20 E-value=3.6 Score=48.49 Aligned_cols=198 Identities=16% Similarity=0.066 Sum_probs=126.3
Q ss_pred chHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHH
Q 040316 250 KSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLE 329 (957)
Q Consensus 250 ~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ 329 (957)
..|--+++...-. +.. ..+...|..+|.+.+|.+|+.++..+..... .| ...+...|+|+|+++|..
T Consensus 100 ~~vr~aaa~ALg~-i~~-----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~------~~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 100 EGLCAGIQAALGW-LGG-----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DP------GPALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHHHHHHHhc-CCc-----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-Ch------HHHHHHHhcCCCHHHHHH
Confidence 4466666665433 222 2356778888899999999999977665321 11 124556688999999999
Q ss_pred HHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHH
Q 040316 330 SLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQ 409 (957)
Q Consensus 330 ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~ 409 (957)
|+..|-.+....-+. .|...+.+.++.+|..++.+.+.+... . -+..+..+....|.+........
T Consensus 167 A~raLG~l~~~~a~~----~L~~al~d~~~~VR~aA~~al~~lG~~-------~---A~~~l~~~~~~~g~~~~~~l~~~ 232 (410)
T TIGR02270 167 ALRALGELPRRLSES----TLRLYLRDSDPEVRFAALEAGLLAGSR-------L---AWGVCRRFQVLEGGPHRQRLLVL 232 (410)
T ss_pred HHHHHHhhccccchH----HHHHHHcCCCHHHHHHHHHHHHHcCCH-------h---HHHHHHHHHhccCccHHHHHHHH
Confidence 999999887765444 455668889999999999888655321 1 34566665665665554433332
Q ss_pred HHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHHHHHHHHhcccccCCCHHHHHHHHH
Q 040316 410 IIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQ 489 (957)
Q Consensus 410 L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~~iL~~LL~~~~~~es~~Vq~~iLt 489 (957)
+... + .+.++..+..++.+ +.+...++|.+|..++- ..+..|+. ... .+.++-..-.
T Consensus 233 lal~----~--~~~a~~~L~~ll~d---------~~vr~~a~~AlG~lg~p-----~av~~L~~-~l~--d~~~aR~A~e 289 (410)
T TIGR02270 233 LAVA----G--GPDAQAWLRELLQA---------AATRREALRAVGLVGDV-----EAAPWCLE-AMR--EPPWARLAGE 289 (410)
T ss_pred HHhC----C--chhHHHHHHHHhcC---------hhhHHHHHHHHHHcCCc-----chHHHHHH-Hhc--CcHHHHHHHH
Confidence 2211 1 22556666666654 23788999999987752 22222322 111 2238888888
Q ss_pred HHHHHHHH
Q 040316 490 SVFKVLIF 497 (957)
Q Consensus 490 Al~Klf~~ 497 (957)
++.||..-
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 88888653
No 62
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.96 E-value=16 Score=42.78 Aligned_cols=342 Identities=18% Similarity=0.139 Sum_probs=177.1
Q ss_pred CHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhh--H-----------HHHHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 040316 122 NQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNA--V-----------RVCFKRLVENLESSEPVILSAVVGVFCELC 188 (957)
Q Consensus 122 Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~A--v-----------R~~~~kL~elL~D~D~sVv~AAv~vL~EI~ 188 (957)
|+-....-++.|+.+..++.++++..-+-.+|..+- + |..|..+..+|.+.|...+.-+..++..++
T Consensus 63 ~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 63 NAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred cHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 345555666777777777777776666666666521 1 122556677888888888775555554443
Q ss_pred hcCCCCcc----CchHH-HHHHHhhcCChHHHHHHHHHHHhhccCCh-HHHh---HHHHHHHHHh-hcCCcchHHHHHHH
Q 040316 189 LKDPRSYL----PLAPE-FYKILVDSKNNWLLIKVLKIFAKLATLEP-RLAK---RVVEPICEFM-RRTEAKSLLFECIR 258 (957)
Q Consensus 189 ~~np~~~l----~Lap~-L~~iL~~~~npWlqIkILkLL~~l~p~ep-~L~~---kLl~~L~~lL-~~t~a~SVLyE~I~ 258 (957)
.--+.... .+.-. +-.+|.++.++=...-.+++|+.+.+.++ |.+. .=...+..++ ++-.+.=+.|+.+-
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 32111100 00111 11223333444333344555655554322 2110 0012233333 33356678899888
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh--HHHhhhhHhhcccccC-CCHHHHHHH-HHHH
Q 040316 259 TVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL--WAVLENKDFVIKSLSD-GDYNIKLES-LRLL 334 (957)
Q Consensus 259 ~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p--~~v~~h~~~Il~cL~D-~D~sIR~~A-LeLL 334 (957)
||... .-++.+++.+ .++. .+..|..|++... +++.-....|..|++- ||.+.|+.+ +.++
T Consensus 223 ciWlL-tFn~~~ae~~-~~~~-------------li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv 287 (442)
T KOG2759|consen 223 CIWLL-TFNPHAAEKL-KRFD-------------LIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV 287 (442)
T ss_pred HHHHh-hcCHHHHHHH-hhcc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 87663 3334433221 1111 1122333333221 2333344555566654 356665532 2222
Q ss_pred hhhcCcccHHHHHHHHHHHhhhcChHHHHHHHH--HHHHHHhhhhcccccchHHHHHH-HHHhhccCCcchHHHHHHHHH
Q 040316 335 MSMVSESNVAEISRVLINYALKSDPEFCNQILG--SILSTCCRNLYEVIVDFDWYASL-LGEMVRIPHCQKGEEIEHQII 411 (957)
Q Consensus 335 ~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~--aI~~ic~~~~y~~~~dfeWyvdv-Ll~Ll~~~~~~v~~eI~~~L~ 411 (957)
. .++-..++-|.+. ..+|.+++.++-. ..+. +.+.-.+.|+-|..= ....+.-+..+....-|.+=.
T Consensus 288 ~-----~~v~k~l~~L~~r-kysDEDL~~di~~L~e~L~----~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa 357 (442)
T KOG2759|consen 288 L-----CKVLKTLQSLEER-KYSDEDLVDDIEFLTEKLK----NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENA 357 (442)
T ss_pred h-----cCchHHHHHHHhc-CCCcHHHHHHHHHHHHHHH----HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhH
Confidence 1 1233333333322 3356666655432 2211 122223456555553 344565556666666776533
Q ss_pred HHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHHHHHHHH-----hcccccCCCHHHHHH
Q 040316 412 DIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEAL-----LQPRTNLLLPSIRAV 486 (957)
Q Consensus 412 dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~~iL~~L-----L~~~~~~es~~Vq~~ 486 (957)
+ +..+-+-++++.+.++|.- ...+.++++++.=+|||..+.+....+++.+ +-.....+.|+||.-
T Consensus 358 ~---rlnennyellkiL~~lLe~------s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ 428 (442)
T KOG2759|consen 358 D---RLNENNYELLKILIKLLET------SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYH 428 (442)
T ss_pred H---HHhhccHHHHHHHHHHHhc------CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHH
Confidence 3 3334455678888888853 2256789999999999998887755544321 112345689999999
Q ss_pred HHHHHHHHHHH
Q 040316 487 YVQSVFKVLIF 497 (957)
Q Consensus 487 iLtAl~Klf~~ 497 (957)
.|.|+=|+..+
T Consensus 429 ALlavQ~lm~~ 439 (442)
T KOG2759|consen 429 ALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.57 E-value=0.85 Score=48.41 Aligned_cols=34 Identities=6% Similarity=0.168 Sum_probs=21.5
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCcc
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKDPRSYL 196 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l 196 (957)
..+...+.|....|+..|+.++..++..-...|.
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~ 89 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE 89 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 4466677788889999999999988876554443
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.56 E-value=2.9 Score=46.80 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=73.3
Q ss_pred hhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChH
Q 040316 281 FLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPE 360 (957)
Q Consensus 281 fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~ 360 (957)
-+.+.++.+|-.|+.+|...+-.+.+...+|...|+.++...+..||..||..++
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~------------------------- 89 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALF------------------------- 89 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------------
Confidence 3355555666666666666555555555556655555554335555555555543
Q ss_pred HHHHHHHHHHHHHhhhhccccc---------chHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcch-HHHHHHHHH
Q 040316 361 FCNQILGSILSTCCRNLYEVIV---------DFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVR-PALVHVCRN 430 (957)
Q Consensus 361 ~r~elI~aI~~ic~~~~y~~~~---------dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir-~~av~~l~~ 430 (957)
++...+.+.... +..-.++++.+.+......+..-+++-+..++....-.- +.++..+.-
T Consensus 90 ----------Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll 159 (298)
T PF12719_consen 90 ----------DLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLL 159 (298)
T ss_pred ----------HHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 333221111111 112256666666665544455555555555554332222 455555544
Q ss_pred HhcCCcccCCCchHHHHHHHhhhhccCCCCC
Q 040316 431 LLIDPALLGNPFLHRILSAAAWVSGEYVEFS 461 (957)
Q Consensus 431 lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i 461 (957)
+..+|.. ...+.+.+...+.+=-|+...
T Consensus 160 ~yF~p~t---~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 160 LYFNPST---EDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred HHcCccc---CCcHHHHHHHHHHHHHHHcCC
Confidence 4444432 224567777777777776643
No 65
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.44 E-value=0.77 Score=42.56 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=72.2
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHH----HHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHH---
Q 040316 236 VVEPICEFMRRTEAKSLLFECIRTVLSSLSEYES----AVK-LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWA--- 307 (957)
Q Consensus 236 Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~----li~-l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~--- 307 (957)
+++.+.+++.+ .+..+...++.++.......+. .++ .++..|..+|.++++.++..++.+|..|+...+..
T Consensus 8 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 45556666655 3356777777766654322122 222 46677778888889999999999999999876532
Q ss_pred Hhh--hhHhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 308 VLE--NKDFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 308 v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
+.. -...++.++++.|..++..++.+|..+|
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222 3677888899999999999999998876
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.42 E-value=0.52 Score=41.99 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=52.4
Q ss_pred HHHHHHh-cCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc
Q 040316 112 NQLRKDL-NSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLK 190 (957)
Q Consensus 112 NtLkKDL-~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~ 190 (957)
..|.+-| +++|+.+|..|+++|+.+..++.. +.|.++|.|+|+.|..+|+..+..+...
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~--------------------~~L~~~l~d~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAI--------------------PALIELLKDEDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHH--------------------HHHHHHHTSSSHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHH--------------------HHHHHHHcCCCHHHHHHHHHHHHHhCCH
Confidence 3566667 789999999999999988877543 3456667788888888888888877532
Q ss_pred CCCCccCchHHHHHHHhhc
Q 040316 191 DPRSYLPLAPEFYKILVDS 209 (957)
Q Consensus 191 np~~~l~Lap~L~~iL~~~ 209 (957)
..++.|.+++.+.
T Consensus 62 ------~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 62 ------EAIPALIKLLQDD 74 (88)
T ss_dssp ------HTHHHHHHHHTC-
T ss_pred ------HHHHHHHHHHcCC
Confidence 2456666666653
No 67
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.28 E-value=5.6 Score=44.78 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=55.0
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHH
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINY 353 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~y 353 (957)
....|..++.+.+..+|.-+..++..+...... -...|+..+.|++..+|.+++..|-.+-.+..... |..+
T Consensus 181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~----~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~----l~~~ 252 (335)
T COG1413 181 AIPLLIELLEDEDADVRRAAASALGQLGSENVE----AADLLVKALSDESLEVRKAALLALGEIGDEEAVDA----LAKA 252 (335)
T ss_pred hhHHHHHHHhCchHHHHHHHHHHHHHhhcchhh----HHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHH----HHHH
Confidence 456677788888889999999999988765411 22556677889999999999999877765554443 4444
Q ss_pred hhhcCh
Q 040316 354 ALKSDP 359 (957)
Q Consensus 354 l~~sD~ 359 (957)
+...+.
T Consensus 253 l~~~~~ 258 (335)
T COG1413 253 LEDEDV 258 (335)
T ss_pred Hhccch
Confidence 444443
No 68
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.18 E-value=1.8 Score=56.74 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=75.8
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHH-----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCC
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAV-----KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDG 322 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li-----~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~ 322 (957)
++.+|=--|++|+-......+.++ +.+| -++| .++..-+|=.||..+.+.+..+|+.+.+|++.|...+.|+
T Consensus 828 ~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V--h~R~-~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDt 904 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEADPSVLSRPDVQEAV--HGRL-NDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDT 904 (1692)
T ss_pred chHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH--HHhh-ccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCC
Confidence 456666667776655433333332 2222 3444 4667889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCccc-HHHHHHHHHHHh
Q 040316 323 DYNIKLESLRLLMSMVSESN-VAEISRVLINYA 354 (957)
Q Consensus 323 D~sIR~~ALeLL~~Lvne~N-v~~IV~ELl~yl 354 (957)
-+++|+|++.++-.||.+.+ +..|+.-..+-+
T Consensus 905 gvsVRKRvIKIlrdic~e~pdf~~i~~~cakml 937 (1692)
T KOG1020|consen 905 GVSVRKRVIKILRDICEETPDFSKIVDMCAKML 937 (1692)
T ss_pred chhHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 99999999999999998754 444443333333
No 69
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=44 Score=44.91 Aligned_cols=237 Identities=16% Similarity=0.228 Sum_probs=129.1
Q ss_pred HhhcCCCccchhhhHH---HHHhhcCCCchHHHHHH---HHHHHHhcCCCHHHHHHHHHhhcc---CCchhhHhhhHHHH
Q 040316 79 EVMSSPQFFYKKIGYH---AVTQSFNDDTPVILLIT---NQLRKDLNSSNQFEVSLALECLSR---IGNVDLARDLTPEV 149 (957)
Q Consensus 79 elmsS~~~~~KRlGYL---aas~~~~~~~dlllLat---NtLkKDL~s~Np~vr~LALr~Ls~---I~tpeLa~~L~~~V 149 (957)
..+.|++.+.|+-|.+ .+.+|+...+++.++.- -.|..=|.+.+++++-.|=++|+- |+...+=.+|+..+
T Consensus 825 ~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL 904 (1702)
T KOG0915|consen 825 TLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSL 904 (1702)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHH
Confidence 3678999999998765 66677776666443221 344456778899999999999985 45555555555555
Q ss_pred HHhhhh---------------------------------------------------------hh---------------
Q 040316 150 FTLLSS---------------------------------------------------------NA--------------- 157 (957)
Q Consensus 150 ~klL~~---------------------------------------------------------~A--------------- 157 (957)
+.-|.. +|
T Consensus 905 ~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i 984 (1702)
T KOG0915|consen 905 VNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAI 984 (1702)
T ss_pred HHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHH
Confidence 554443 00
Q ss_pred -------HH----HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCch-HHHHHHHhh-cCChHH-----HHHHH
Q 040316 158 -------VR----VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLA-PEFYKILVD-SKNNWL-----LIKVL 219 (957)
Q Consensus 158 -------vR----~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~La-p~L~~iL~~-~~npWl-----qIkIL 219 (957)
++ ..+|||+..=-|+|+.|..|-...-..+.......--... ..+=++|++ ...+|- ...+.
T Consensus 985 ~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~ 1064 (1702)
T KOG0915|consen 985 AKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALA 1064 (1702)
T ss_pred HHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 00 1123333333488888877766665555543222100000 111122333 356773 33444
Q ss_pred HHHHhhccCChHHHhHHHHHHHHHhhc-------C------CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhh----
Q 040316 220 KIFAKLATLEPRLAKRVVEPICEFMRR-------T------EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFL---- 282 (957)
Q Consensus 220 kLL~~l~p~ep~L~~kLl~~L~~lL~~-------t------~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL---- 282 (957)
++++. +......+++-+....+++. . .+.++--=|++.+ . ..+..-.+.++..+..||
T Consensus 1065 dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~-d--~~~~~~~~~~l~~iLPfLl~~g 1139 (1702)
T KOG0915|consen 1065 DLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC-D--VTNGAKGKEALDIILPFLLDEG 1139 (1702)
T ss_pred HHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c--cCCcccHHHHHHHHHHHHhccC
Confidence 55544 22222333333222222211 0 0112222222211 1 122222344555555665
Q ss_pred -cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhccccc
Q 040316 283 -VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLS 320 (957)
Q Consensus 283 -~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~ 320 (957)
.++=+++|-+++..+..|++..+..+.+|...++.||-
T Consensus 1140 ims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll 1178 (1702)
T KOG0915|consen 1140 IMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLL 1178 (1702)
T ss_pred cccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHH
Confidence 46778999999999999999999999999988776654
No 70
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.05 E-value=27 Score=42.58 Aligned_cols=261 Identities=13% Similarity=0.164 Sum_probs=139.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC----cchhHHHHHH-hhcCCCccchh----hhHHHHHhhcCCC--
Q 040316 35 KAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGAD----MSFAAFHAVE-VMSSPQFFYKK----IGYHAVTQSFNDD-- 103 (957)
Q Consensus 35 ~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~D----mS~~~f~VVe-lmsS~~~~~KR----lGYLaas~~~~~~-- 103 (957)
+.+.++-+.+.+.+...++.|-..+-++. .|+- -.|.|+..+. .+...+....| +++.++...+...
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v--~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~E 211 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLV--NGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFE 211 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHH--cCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCC
Confidence 34445556666777777888888888864 4764 3567777665 44555544444 4555555555544
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHH---HHHhhccCCchhhHhhhHHHHHHhhhhh---------------------hHH
Q 040316 104 TPVILLITNQLRKDLNSSNQFEVSL---ALECLSRIGNVDLARDLTPEVFTLLSSN---------------------AVR 159 (957)
Q Consensus 104 ~dlllLatNtLkKDL~s~Np~vr~L---ALr~Ls~I~tpeLa~~L~~~V~klL~~~---------------------AvR 159 (957)
|-++-+. +.+-.-..|..+.+|-- |.+.+-+.-++.-+..+.|.++..+... .+-
T Consensus 212 Pyiv~~l-p~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 212 PYIVPIL-PSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred chHHhhH-HHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH
Confidence 3333333 44444455666666543 3444444333333333344333333321 111
Q ss_pred ----HHHHHHHhhhcCCChhHHHHHHHHHHHhhh--cCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhcc----CC
Q 040316 160 ----VCFKRLVENLESSEPVILSAVVGVFCELCL--KDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLAT----LE 229 (957)
Q Consensus 160 ----~~~~kL~elL~D~D~sVv~AAv~vL~EI~~--~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p----~e 229 (957)
.+.|.+.+-|.|..+.|.-++...+..++. +||. ..+++|.+.+.|.+. + --.+..++.|..-+- ..
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp-~-~~~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADP-S-CYTPECLDSLGATTFVAEVDA 367 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCc-c-cchHHHHHhhcceeeeeeecc
Confidence 235677788899999999999998888876 4555 456677777777541 1 023344444433111 13
Q ss_pred hHHHhHHHHHHHHHhhcCCcchHHHHHHHHHH---hhcCCcHH---HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh
Q 040316 230 PRLAKRVVEPICEFMRRTEAKSLLFECIRTVL---SSLSEYES---AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK 303 (957)
Q Consensus 230 p~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii---~~l~~~~~---li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~ 303 (957)
|.++ .|++.+..-+.. .+.+.-..++..+- ....+... .+......|..-+.+.+|++|+++.+++..+...
T Consensus 368 psLa-lmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 368 PSLA-LMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred hhHH-HHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 4433 234444333321 11222222222111 11222111 2334455555555666899999999999888764
No 71
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.04 E-value=0.43 Score=42.55 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHhh-cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHh
Q 040316 276 VKVREFL-VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYA 354 (957)
Q Consensus 276 ~~L~~fL-~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl 354 (957)
..|...| .+.++.+|..++..|..+- ++.+ ...++..++|+|+.||..|+.-|-.+-+ ...+..|.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~~L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--DPEA----IPALIELLKDEDPMVRRAAARALGRIGD----PEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--HHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--CHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHHH
Confidence 3455556 7778888888888777543 2333 3455556688888888888888887743 44555666666
Q ss_pred hhcChH-HHHHHHHHH
Q 040316 355 LKSDPE-FCNQILGSI 369 (957)
Q Consensus 355 ~~sD~~-~r~elI~aI 369 (957)
.+.+.. .|..++.++
T Consensus 72 ~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 72 QDDDDEVVREAAAEAL 87 (88)
T ss_dssp TC-SSHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhhc
Confidence 655433 466666655
No 72
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.97 E-value=14 Score=43.39 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=29.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhccc
Q 040316 283 VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKS 318 (957)
Q Consensus 283 ~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~c 318 (957)
...|+++++.+|.++..++...|.++.+|...++..
T Consensus 375 ~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~ 410 (415)
T PF12460_consen 375 SLPDADVLLSSLETLKMILEEAPELISEHLSSLIPR 410 (415)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 567788889999999888888888888888887654
No 73
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=92.91 E-value=16 Score=41.13 Aligned_cols=246 Identities=15% Similarity=0.103 Sum_probs=133.3
Q ss_pred hHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHh
Q 040316 73 AAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTL 152 (957)
Q Consensus 73 ~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~kl 152 (957)
..-.+++++.+.++..|.-+..++...- ..-++..+.+-|.+.++.+|..|..+|+.+.+++.++.+...+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG------SEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 4555666777777777766665544321 124556777888888889999999999998888776544433222
Q ss_pred hhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcC----------ChH-HHHHHHHH
Q 040316 153 LSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSK----------NNW-LLIKVLKI 221 (957)
Q Consensus 153 L~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~----------npW-lqIkILkL 221 (957)
|.+..|..+|..+|..+...+. +..++..+.+.. ..| .....+..
T Consensus 117 ------------------d~~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 117 ------------------DENEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred ------------------CCcHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 4444555555555544443322 223333333211 112 12223333
Q ss_pred HHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHh
Q 040316 222 FAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIA 301 (957)
Q Consensus 222 L~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv 301 (957)
+..+. +++ ..+.+.+.+.... .-|-..++..+....... ...+..+..++.+.+.++|+-++..+..+-
T Consensus 173 l~~~~--~~~----~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 173 LGELG--DPE----AIPLLIELLEDED-ADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred HHHcC--Chh----hhHHHHHHHhCch-HHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 33322 222 2333344444322 244555555554432221 234566777888899999999999988876
Q ss_pred hhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHH
Q 040316 302 PKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSIL 370 (957)
Q Consensus 302 ~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~ 370 (957)
. .++...+...+.+.|...+..+-..+- ..........+...+.+.+...+.....++.
T Consensus 242 ~------~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 300 (335)
T COG1413 242 D------EEAVDALAKALEDEDVILALLAAAALG----ALDLAEAALPLLLLLIDEANAVRLEAALALG 300 (335)
T ss_pred c------chhHHHHHHHHhccchHHHHHHHHHhc----ccCchhhHHHHHHHhhcchhhHHHHHHHHHH
Confidence 4 334445555666666666666555443 2223333444445555555555555554444
No 74
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.77 E-value=2 Score=44.06 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHH
Q 040316 157 AVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRV 236 (957)
Q Consensus 157 AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kL 236 (957)
++..+..++..+|.++++.-.-+++.++..++..++ +++|.....+|+.. ++++|.. +..+...+..
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~----------~e~l~~~~~~W~~~-Ll~~L~~--~~~~~~~~~a 88 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS----------WEILLSHGSQWLRA-LLSILEK--PDPPSVLEAA 88 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHH-HHHHHcC--CCCHHHHHHH
Confidence 455677788888999888888888888888877653 34555556778765 5566655 2223333333
Q ss_pred HHHHHHHhhcCCc-chHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhh
Q 040316 237 VEPICEFMRRTEA-KSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFV 315 (957)
Q Consensus 237 l~~L~~lL~~t~a-~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~I 315 (957)
+..+..++..... +.+..|. .. +.-+.+++.++ .++.. ....-.+|..|..++..||..|.+|...|
T Consensus 89 i~~L~~l~~~~~~~p~l~Rei----~t--p~l~~~i~~ll----~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki 156 (165)
T PF08167_consen 89 IITLTRLFDLIRGKPTLTREI----AT--PNLPKFIQSLL----QLLQD--SSCPETALDALATLLPHHPTTFRPFANKI 156 (165)
T ss_pred HHHHHHHHHHhcCCCchHHHH----hh--ccHHHHHHHHH----HHHhc--cccHHHHHHHHHHHHHHCCccccchHHHH
Confidence 4444444433211 1222221 11 11122222222 33222 56677899999999999999999888776
Q ss_pred c
Q 040316 316 I 316 (957)
Q Consensus 316 l 316 (957)
-
T Consensus 157 ~ 157 (165)
T PF08167_consen 157 E 157 (165)
T ss_pred H
Confidence 4
No 75
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=37 Score=42.59 Aligned_cols=443 Identities=15% Similarity=0.176 Sum_probs=220.0
Q ss_pred chhhhhHHhhhhHHHHHHHHhhcChHHH------HHHHHHHHHHHHHhcC-----------------CChHHHHHHHHHH
Q 040316 3 GTSIMETLFQRDLDDLIKGIRQQQIKES------LFISKAIEEIRREIKS-----------------TDLPTKSAALRKL 59 (957)
Q Consensus 3 ~~~~~~~~f~rsL~dfIr~IR~~k~~E~------~~I~~elaEIR~eL~S-----------------~d~~~K~~AL~KL 59 (957)
.|..+..+...-|..+|.|.|.....-+ .-+-.++.=.+.-|.. +|...+..|+..|
T Consensus 162 ~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Cl 241 (859)
T KOG1241|consen 162 DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCL 241 (859)
T ss_pred CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHH
Confidence 3556778888889999999987742211 2233344445544443 3455666677666
Q ss_pred HHHHhcCCCC-----cchhHH-HHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q 040316 60 SYLSSLHGAD-----MSFAAF-HAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECL 133 (957)
Q Consensus 60 IYL~ML~G~D-----mS~~~f-~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~L 133 (957)
.-+.|| -|+ |-.+.| --+.-|-|++-+.+--|--|.+..+++.-|+++=.--...+++--.+.+. |
T Consensus 242 vkIm~L-yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~f---a---- 313 (859)
T KOG1241|consen 242 VKIMSL-YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYF---A---- 313 (859)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH---H----
Confidence 665554 343 233333 33456777777777777777776666666666665555555555111111 1
Q ss_pred ccCCchhhHhhhHHHHHHhhhh-------------hh----------------HHHHHHHHHhhhcCCChhHHHHHHHHH
Q 040316 134 SRIGNVDLARDLTPEVFTLLSS-------------NA----------------VRVCFKRLVENLESSEPVILSAVVGVF 184 (957)
Q Consensus 134 s~I~tpeLa~~L~~~V~klL~~-------------~A----------------vR~~~~kL~elL~D~D~sVv~AAv~vL 184 (957)
..-+.++.|.++.+|.+ .| ++..+|-+.+.+..+|---.-+|+.++
T Consensus 314 -----~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAF 388 (859)
T KOG1241|consen 314 -----RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAF 388 (859)
T ss_pred -----HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHH
Confidence 22235666777777765 01 223345556677777766666666555
Q ss_pred HHhhh-cCCCCccCc----hHHHHHHHhh------cCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHH
Q 040316 185 CELCL-KDPRSYLPL----APEFYKILVD------SKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLL 253 (957)
Q Consensus 185 ~EI~~-~np~~~l~L----ap~L~~iL~~------~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVL 253 (957)
-.+.. .++....++ .|.+.+++.+ ....|..-+|.+.+..-+-.+..+..+ +..+..-|+ ..+=|.
T Consensus 389 GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~-l~~l~~gL~--DePrva 465 (859)
T KOG1241|consen 389 GSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK-LSALLEGLN--DEPRVA 465 (859)
T ss_pred HhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH-HHHHHHHhh--hCchHH
Confidence 54443 223222233 3555565553 357888888888776332222222221 222222221 112222
Q ss_pred HHHHHHHHhh-------cC------CcHHHHHHHHHHHHHhh---cCCCchHHHHHHHHHHHHhhhChHHHhh----hhH
Q 040316 254 FECIRTVLSS-------LS------EYESAVKLAVVKVREFL---VDDDPNLKYLGLQALSIIAPKHLWAVLE----NKD 313 (957)
Q Consensus 254 yE~I~~Ii~~-------l~------~~~~li~l~v~~L~~fL---~ssDpNlrYvaL~~L~~Iv~~~p~~v~~----h~~ 313 (957)
-.|...++.. .+ ........+++.|..-- ..++.|+|-.+..+|..|+...|+.+.+ ...
T Consensus 466 ~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l 545 (859)
T KOG1241|consen 466 SNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL 545 (859)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 2222222221 00 01123344444444332 2267899999999999999887765433 333
Q ss_pred hhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHH-
Q 040316 314 FVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLG- 392 (957)
Q Consensus 314 ~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl- 392 (957)
.++..|+.. |...+ .+..+..++.++=.-|..++. .+..+ . .+|+.-+.|.++
T Consensus 546 ~il~kl~q~---i~~~~----l~~~dr~q~~eLQs~Lc~~Lq---------------~i~rk-~---~~~~~~~~d~iM~ 599 (859)
T KOG1241|consen 546 VILEKLDQT---ISSQI----LSLADRAQLNELQSLLCNTLQ---------------SIIRK-V---GSDIREVSDQIMG 599 (859)
T ss_pred HHHHHHHHH---HHHHh----ccHhhHHHHHHHHHHHHHHHH---------------HHHHH-c---cccchhHHHHHHH
Confidence 333333221 22111 122333333333333333322 22111 1 123333444444
Q ss_pred ---HhhccCCcc-hHHHHHHHHHHHHHh--------cCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCC
Q 040316 393 ---EMVRIPHCQ-KGEEIEHQIIDIAMR--------VKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEF 460 (957)
Q Consensus 393 ---~Ll~~~~~~-v~~eI~~~L~dIi~r--------vp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~ 460 (957)
.++....+. +-++..-.+-.++.. .|.+.+|...- +.|...-.+..+++=++|.-+.-
T Consensus 600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~g----------L~n~~e~qVc~~aVglVgdl~ra 669 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMG----------LSNFQEYQVCAAAVGLVGDLARA 669 (859)
T ss_pred HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH----------hhcchHHHHHHHHHHHHHHHHHH
Confidence 444442222 222322222222211 12233332222 22444566777777788877654
Q ss_pred CCC-----HHHHHHHHhcc-cccCCCHHHHHHHHHHHHHHHHH
Q 040316 461 SRN-----PFELMEALLQP-RTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 461 i~~-----p~~iL~~LL~~-~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
+++ ..+++..|++. .-....-.||-+||..+.-|.+.
T Consensus 670 L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 670 LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 432 45666666542 12334566888889888888765
No 76
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.20 E-value=3.7 Score=49.95 Aligned_cols=124 Identities=16% Similarity=0.102 Sum_probs=73.6
Q ss_pred CCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHhhhcChHHH
Q 040316 285 DDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMV--SESNVAEISRVLINYALKSDPEFC 362 (957)
Q Consensus 285 sDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lv--ne~Nv~~IV~ELl~yl~~sD~~~r 362 (957)
.+...|-++-..+.+..+.+|++-..-++..+.+..|.|..||..|+.=|..+| |++.+..|+.-|...+...|+.-.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~ 113 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVEL 113 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHH
Confidence 456666667677777777778877777777888889999999999999999999 457899999999998886665433
Q ss_pred HHHHHHHHHHHhhhhcccccchHHHHHHHHHhhc---cCCcchHHHHHHHHHHHHH
Q 040316 363 NQILGSILSTCCRNLYEVIVDFDWYASLLGEMVR---IPHCQKGEEIEHQIIDIAM 415 (957)
Q Consensus 363 ~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~---~~~~~v~~eI~~~L~dIi~ 415 (957)
..+=.++..+-.. |..-.+..|++.+. ...+.+.+.++..|..-+.
T Consensus 114 ~~v~~sL~~ll~~-------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 114 DAVKNSLMSLLKQ-------DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 3333333333222 22235556665444 2333344455555544443
No 77
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.95 E-value=10 Score=43.32 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=110.2
Q ss_pred HHHHHHhhhc-CCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhc------CChHHHHHHHHHHHhhccC
Q 040316 161 CFKRLVENLE-SSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDS------KNNWLLIKVLKIFAKLATL 228 (957)
Q Consensus 161 ~~~kL~elL~-D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~------~npWlqIkILkLL~~l~p~ 228 (957)
|.||+++.+. ........-|.=++..|+.-..... ..-+|.|+++|.+. -.-|. |+..+-.
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWA-------LGNiAGD 187 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWA-------LGNIAGD 187 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHH-------hccccCC
Confidence 4567777774 3333444455556666665332221 13468888888642 22343 4444433
Q ss_pred ChHHHh-----HHHHHHHHHhhcCC-cchHHHHHHHHHHhhc-----CCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 040316 229 EPRLAK-----RVVEPICEFMRRTE-AKSLLFECIRTVLSSL-----SEYESAVKLAVVKVREFLVDDDPNLKYLGLQAL 297 (957)
Q Consensus 229 ep~L~~-----kLl~~L~~lL~~t~-a~SVLyE~I~~Ii~~l-----~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L 297 (957)
.+.... -.++++..++.++. ..+++..+.=++.... +..-+.+..++..|.+++.+-|+++--=|+-++
T Consensus 188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi 267 (526)
T COG5064 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI 267 (526)
T ss_pred chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 333222 24577888887632 2377777766654431 123456788999999999999999999999999
Q ss_pred HHHhhhChHHHhh-----hhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHH
Q 040316 298 SIIAPKHLWAVLE-----NKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAE 345 (957)
Q Consensus 298 ~~Iv~~~p~~v~~-----h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~ 345 (957)
+.|..--.+.++. .-..+++.|..++.-|..-||..+-.+|+.+..+.
T Consensus 268 SYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QT 320 (526)
T COG5064 268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQT 320 (526)
T ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccce
Confidence 8887543333222 22346677888888888888888888887765543
No 78
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.89 E-value=58 Score=43.62 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHH-----HHHHHHHHHHhhcCCCchH
Q 040316 215 LIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESA-----VKLAVVKVREFLVDDDPNL 289 (957)
Q Consensus 215 qIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~l-----i~l~v~~L~~fL~ssDpNl 289 (957)
++++-+++-.+....|.+---+++.|..-|.+ ....+-.+++.++-..+...... -.+-...|++| .+.+.++
T Consensus 239 ~~~~he~i~~L~~~~p~ll~~vip~l~~eL~s-e~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~-~D~~~~v 316 (1266)
T KOG1525|consen 239 KIKYHELILELWRIAPQLLLAVIPQLEFELLS-EQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF-NDISVEV 316 (1266)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh-ccCChhh
Confidence 45555666666666666666666666666655 45677888888765543322111 11222345555 5778999
Q ss_pred HHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHhh----hcChHHHHH
Q 040316 290 KYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE-SNVAEISRVLINYAL----KSDPEFCNQ 364 (957)
Q Consensus 290 rYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne-~Nv~~IV~ELl~yl~----~sD~~~r~e 364 (957)
|...+.....+...+|.....-......+..|.|.-+|.+..-++....=. -+...+.. |++.+. +--..+|.+
T Consensus 317 R~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~ 395 (1266)
T KOG1525|consen 317 RMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQ 395 (1266)
T ss_pred hhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHH
Confidence 999999999999999987766555555566677777777765554433222 22233333 555544 345677888
Q ss_pred HHHHHHHHHhh--------hhcccccchHHHHHHHHHhhccCCc
Q 040316 365 ILGSILSTCCR--------NLYEVIVDFDWYASLLGEMVRIPHC 400 (957)
Q Consensus 365 lI~aI~~ic~~--------~~y~~~~dfeWyvdvLl~Ll~~~~~ 400 (957)
++..+..+-.. .++ ..+.|.|.-+-|+.++...+.
T Consensus 396 Am~~LaqlYk~~~~~~~~~~k~-~t~~~swIp~kLL~~~y~~~~ 438 (1266)
T KOG1525|consen 396 AMNGLAQLYKNVYCLRSAGGKE-ITPPFSWIPDKLLHLYYENDL 438 (1266)
T ss_pred HHHHHHHHHHHHHHhhccCccc-ccccccccchhHHhhHhhccc
Confidence 77665443221 111 346889999999998877643
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=91.82 E-value=31 Score=40.85 Aligned_cols=206 Identities=14% Similarity=0.057 Sum_probs=120.2
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHH
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICE 242 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~ 242 (957)
..+.+.|.|.+++|-.++...|-++... ...+.|...|. ..+|+..--++..+..... +| .+.+..
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~------~a~~~L~~~L~-~~~p~vR~aal~al~~r~~-~~------~~~L~~ 154 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGR------QAEPWLEPLLA-ASEPPGRAIGLAALGAHRH-DP------GPALEA 154 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCch------HHHHHHHHHhc-CCChHHHHHHHHHHHhhcc-Ch------HHHHHH
Confidence 3455666666777766666666554321 12344444553 3566666556555554221 11 234555
Q ss_pred HhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCC
Q 040316 243 FMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDG 322 (957)
Q Consensus 243 lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~ 322 (957)
+++. .++.|--++++++-.. .. . .++..|...+.+.++++|..++..+..+.. +..+. .+...+.++
T Consensus 155 ~L~d-~d~~Vra~A~raLG~l-~~-~----~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~----~l~~~~~~~ 221 (410)
T TIGR02270 155 ALTH-EDALVRAAALRALGEL-PR-R----LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWG----VCRRFQVLE 221 (410)
T ss_pred HhcC-CCHHHHHHHHHHHHhh-cc-c----cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHH----HHHHHHhcc
Confidence 5654 6688888898887553 22 1 244456677899999999999999988854 44432 222234566
Q ss_pred CHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcch
Q 040316 323 DYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQK 402 (957)
Q Consensus 323 D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v 402 (957)
+...+.++..++-.+-++ .++.-|...+.+.. .+..++.+++.+.. +. .+..|++.+... ++
T Consensus 222 g~~~~~~l~~~lal~~~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~---av~~L~~~l~d~--~~ 283 (410)
T TIGR02270 222 GGPHRQRLLVLLAVAGGP----DAQAWLRELLQAAA--TRREALRAVGLVGD-------VE---AAPWCLEAMREP--PW 283 (410)
T ss_pred CccHHHHHHHHHHhCCch----hHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cc---hHHHHHHHhcCc--HH
Confidence 666665555544333222 67777777766543 78888888886532 23 666777666543 24
Q ss_pred HHHHHHHHHHH
Q 040316 403 GEEIEHQIIDI 413 (957)
Q Consensus 403 ~~eI~~~L~dI 413 (957)
.......+..|
T Consensus 284 aR~A~eA~~~I 294 (410)
T TIGR02270 284 ARLAGEAFSLI 294 (410)
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.74 E-value=4.3 Score=43.06 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=81.5
Q ss_pred cCCCHHHHHHHHHHHhhhcCcc----cHHHHHHHHH-------HHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHH
Q 040316 320 SDGDYNIKLESLRLLMSMVSES----NVAEISRVLI-------NYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYA 388 (957)
Q Consensus 320 ~D~D~sIR~~ALeLL~~Lvne~----Nv~~IV~ELl-------~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyv 388 (957)
++.|=..|..||+-|.+++... +...++..|. ..+.+........++..|..++......+.+-.++++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4666777777777777776544 3333333332 1222222334455555555554443333334456677
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHH-HHHHHHHhcCCcccCCCchHHHH----HHHhhhhccCC---CC
Q 040316 389 SLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPAL-VHVCRNLLIDPALLGNPFLHRIL----SAAAWVSGEYV---EF 460 (957)
Q Consensus 389 dvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~a-v~~l~~lL~d~~~l~~~~~~~~l----~a~aWIlGEY~---~~ 460 (957)
..|++.+......+.......+..++..++ ....+ ...+...+.+ ..+.+. ..+.-++..++ ..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~-------Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKS-------KNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT--------S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHccchHhh
Confidence 777777766666677777777777777665 11222 2333222221 223332 22333355555 22
Q ss_pred CCCH---HHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 461 SRNP---FELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 461 i~~p---~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
+... ..+... +.....+-.++||...-.++..++..
T Consensus 169 l~~~~~~~~l~~~-l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 169 LQKSAFLKQLVKA-LVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp G--HHHHHHHHHH-HHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 3322 234443 44457788999999998888888766
No 81
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.64 E-value=2.3 Score=54.65 Aligned_cols=177 Identities=12% Similarity=0.117 Sum_probs=114.8
Q ss_pred HHHHHHHhhhcCC-CC-ccCchHHHHHHHhh---cCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHH
Q 040316 180 VVGVFCELCLKDP-RS-YLPLAPEFYKILVD---SKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLF 254 (957)
Q Consensus 180 Av~vL~EI~~~np-~~-~l~Lap~L~~iL~~---~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLy 254 (957)
++..+||----.+ +. .-.++|.+.++..+ ..+|=+|...-=.|.++.+...+....-++.+.++|.+++++-|=-
T Consensus 900 ~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRs 979 (1251)
T KOG0414|consen 900 LISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRS 979 (1251)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeee
Confidence 4555555433334 22 23466777666654 3567777766667778888777777777788888888655432222
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHH
Q 040316 255 ECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLL 334 (957)
Q Consensus 255 E~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL 334 (957)
.|+-......--.+.++..-..-|=+.|.+.++.+|-.++..|..+.-.+.--|+-+....-.||.||+.-|+-.|=...
T Consensus 980 N~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred cchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 22211111100123445555566666778889999999999999999888777888888888999999999999998555
Q ss_pred hhhcCccc-HHHHHHHHHHHhhh
Q 040316 335 MSMVSESN-VAEISRVLINYALK 356 (957)
Q Consensus 335 ~~Lvne~N-v~~IV~ELl~yl~~ 356 (957)
--+.++.| +-.++.+++.++.+
T Consensus 1060 ~Els~k~n~iynlLPdil~~Ls~ 1082 (1251)
T KOG0414|consen 1060 KELSSKGNTIYNLLPDILSRLSN 1082 (1251)
T ss_pred HHhhhcccchhhhchHHHHhhcc
Confidence 55555555 23344555555544
No 82
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.48 E-value=6.6 Score=46.45 Aligned_cols=141 Identities=15% Similarity=0.074 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC-----hHHHhhhhHhhcccccC-CCHHHHHHHHHHHhhhcCcc----
Q 040316 272 KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKH-----LWAVLENKDFVIKSLSD-GDYNIKLESLRLLMSMVSES---- 341 (957)
Q Consensus 272 ~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~-----p~~v~~h~~~Il~cL~D-~D~sIR~~ALeLL~~Lvne~---- 341 (957)
.++.+.|..+=.+....-+=-||..|..+.... -+.|.+-...+++.|+| .|.+||..||.+|..||+.+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 344444444422223344556777777777655 23455555567778888 89999999999999999863
Q ss_pred --cHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcC
Q 040316 342 --NVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVK 418 (957)
Q Consensus 342 --Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp 418 (957)
..+..+..+++-..+..+...+.+...-..+.+.. +..-||.++..++-......+-.++..+..++.+++
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~------~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH------LPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLS 438 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh------CchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC
Confidence 45566677777777777766665555433333321 234588888887776666666666666666666554
No 83
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=2.5 Score=48.37 Aligned_cols=294 Identities=15% Similarity=0.159 Sum_probs=173.3
Q ss_pred HhhcCCCccchhhhHHHHHhhcCC--Cch--HHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchh-----hHhhh-HHH
Q 040316 79 EVMSSPQFFYKKIGYHAVTQSFND--DTP--VILLITNQLRKDLNSSNQFEVSLALECLSRIGNVD-----LARDL-TPE 148 (957)
Q Consensus 79 elmsS~~~~~KRlGYLaas~~~~~--~~d--lllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpe-----La~~L-~~~ 148 (957)
-+++|.+....+.|--++..++-. +.- +.++-.-.|...+..++-.+++.|..||.++.|-+ +|+.= ...
T Consensus 92 ~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p 171 (550)
T KOG4224|consen 92 ALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEP 171 (550)
T ss_pred HHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhh
Confidence 356777777777776666643321 111 22233334555666777888999999999998864 33221 112
Q ss_pred HHHhhhhhhHH--------------------H-----HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCC--CC----ccC
Q 040316 149 VFTLLSSNAVR--------------------V-----CFKRLVENLESSEPVILSAVVGVFCELCLKDP--RS----YLP 197 (957)
Q Consensus 149 V~klL~~~AvR--------------------~-----~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np--~~----~l~ 197 (957)
+.++.+++-+| . .+|-|+++|...|+.|..-++.++-.|+-... +. =.+
T Consensus 172 ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~ 251 (550)
T KOG4224|consen 172 LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPK 251 (550)
T ss_pred hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccc
Confidence 23333332111 1 14668889999999999988888877764321 11 124
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH-----HHHHHHHHhhcCCcchHHHHHHHHH--HhhcCCcHHH
Q 040316 198 LAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR-----VVEPICEFMRRTEAKSLLFECIRTV--LSSLSEYESA 270 (957)
Q Consensus 198 Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k-----Ll~~L~~lL~~t~a~SVLyE~I~~I--i~~l~~~~~l 270 (957)
++|.|+.++.+ +++-.++..=-.|+.++..+. .... -++.+..++++ +.--.+.+.+-|| +..-+-++.+
T Consensus 252 lv~~Lv~Lmd~-~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs-~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 252 LVPALVDLMDD-GSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQS-PMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred hHHHHHHHHhC-CChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhC-cchhHHHHHHHHHhhcccccCcccc
Confidence 67778777765 555554444344444443321 1111 23556677766 3334556666555 3322333333
Q ss_pred H--HHHHHHHHHhhcCCCch-HHHHHHHHHHHHhhhCh---HHHhh--hhHhhcccccCCCHHHHHHHHHHHhhhcCccc
Q 040316 271 V--KLAVVKVREFLVDDDPN-LKYLGLQALSIIAPKHL---WAVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMVSESN 342 (957)
Q Consensus 271 i--~l~v~~L~~fL~ssDpN-lrYvaL~~L~~Iv~~~p---~~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~N 342 (957)
+ .-....|.++|.-+|.+ ++.-|...|..++..+- ..|.. -+....+.+-|...+++.+.--.+..++=.+|
T Consensus 329 I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 3 23566788888777776 99999999999987432 22211 23444455556558888876666666666666
Q ss_pred HHH------HHHHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 343 VAE------ISRVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 343 v~~------IV~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
-+. |+.-|+.+..+...+.+.....+++.+|+.
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 554 344556666666778888888888877764
No 84
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=12 Score=47.20 Aligned_cols=172 Identities=20% Similarity=0.153 Sum_probs=85.8
Q ss_pred HHHHHHhcCC-CHHHHHHHHHhhccC---Cchh-----hHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHH
Q 040316 112 NQLRKDLNSS-NQFEVSLALECLSRI---GNVD-----LARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVG 182 (957)
Q Consensus 112 NtLkKDL~s~-Np~vr~LALr~Ls~I---~tpe-----La~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~ 182 (957)
+.|..-|+.. +|+.+--||.-||-+ .+.+ .+..++|-+..+|+| ..++.++..|+-
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~---------------E~n~DIMl~AcR 234 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH---------------EHNFDIMLLACR 234 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc---------------cccHHHHHHHHH
Confidence 3344445544 777777788777753 3332 234444444444444 345667777766
Q ss_pred HHHHhhhcCCCC---c--cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHH---------hHHHHHHHHHhhcCC
Q 040316 183 VFCELCLKDPRS---Y--LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLA---------KRVVEPICEFMRRTE 248 (957)
Q Consensus 183 vL~EI~~~np~~---~--l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~---------~kLl~~L~~lL~~t~ 248 (957)
++..+|.--|.. - ...+|.|...|.+.--==..=..|..|.++.+..|+-. -.+++.+.--.++ .
T Consensus 235 altyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR-~ 313 (1051)
T KOG0168|consen 235 ALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQR-V 313 (1051)
T ss_pred HHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHH-H
Confidence 666666555542 1 12578888777652111112234555666666555421 1233444444444 2
Q ss_pred cchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 040316 249 AKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAP 302 (957)
Q Consensus 249 a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~ 302 (957)
+-|++- |++-++-++....+--++-.|..+|...|.-.---++.++.+|+.
T Consensus 314 Alaiaa---N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 314 ALAIAA---NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHHH---HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 333333 333332333334455577777777754443333334444555554
No 85
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.34 E-value=29 Score=40.37 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhcCCCchH-HHHHHHHHHHHhhh----ChHHHhhhhHhhcccccCCCHHHHHHHHHH
Q 040316 269 SAVKLAVVKVREFLVDDDPNL-KYLGLQALSIIAPK----HLWAVLENKDFVIKSLSDGDYNIKLESLRL 333 (957)
Q Consensus 269 ~li~l~v~~L~~fL~ssDpNl-rYvaL~~L~~Iv~~----~p~~v~~h~~~Il~cL~D~D~sIR~~ALeL 333 (957)
.+++..+++|..++.+++... ---....+..++.. +-..+.+-...+-.|++++|+.+|..|+.-
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 677888889999987633222 22233344444432 235667777778889999999999998864
No 86
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=90.26 E-value=35 Score=42.78 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=110.3
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh-cCChHHHHHHHHHHH--hhccCChHHHhHHHHH
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD-SKNNWLLIKVLKIFA--KLATLEPRLAKRVVEP 239 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~-~~npWlqIkILkLL~--~l~p~ep~L~~kLl~~ 239 (957)
..++..|.|++.-+.+.|..+|..|..++|.+=.-.+-.+-+++.. ..+.-.+-..+-+|. .+...+..++.+|+.+
T Consensus 344 ~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~i 423 (988)
T KOG2038|consen 344 VLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISI 423 (988)
T ss_pred HHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHH
Confidence 3466778899999999999999999999997533333334444322 111111111111221 2333444455555554
Q ss_pred HHHHhhc--------C------------Cc----------------chHHHHHHHHHHhh-cC---CcHHHHHHHHHHHH
Q 040316 240 ICEFMRR--------T------------EA----------------KSLLFECIRTVLSS-LS---EYESAVKLAVVKVR 279 (957)
Q Consensus 240 L~~lL~~--------t------------~a----------------~SVLyE~I~~Ii~~-l~---~~~~li~l~v~~L~ 279 (957)
...++.+ + ++ .|=++.++.+=++- +| ..+..+..-+..|=
T Consensus 424 YF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLF 503 (988)
T KOG2038|consen 424 YFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLF 503 (988)
T ss_pred HHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHH
Confidence 4333210 0 00 12233333221111 11 12334444556666
Q ss_pred HhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhh-cC
Q 040316 280 EFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALK-SD 358 (957)
Q Consensus 280 ~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~-sD 358 (957)
.+..+..-|+-.-+|..|.++...+--+=.+|+..++..|=|| ++||.+-....++-|.+-+.. ..
T Consensus 504 kl~HssNFNTsVQaLmLlfQvs~~~~~vSDRyY~aLY~kLLdP-------------~l~~sSKq~m~LnLlykslK~D~n 570 (988)
T KOG2038|consen 504 KLTHSSNFNTSVQALMLLFQVSKKNDYVSDRYYRALYRKLLDP-------------RLMNSSKQAMFLNLLYKSLKEDIN 570 (988)
T ss_pred HHHhhcccchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCc-------------ccCchHHHHHHHHHHHHHHHhhhh
Confidence 6667778888888888888887766666667888888877777 233433333333333333321 22
Q ss_pred hHHHHHHHHHHHHHHhhhhcccc
Q 040316 359 PEFCNQILGSILSTCCRNLYEVI 381 (957)
Q Consensus 359 ~~~r~elI~aI~~ic~~~~y~~~ 381 (957)
..-++..|++|++.+....|.++
T Consensus 571 i~RV~AFvKRlLQVa~~q~P~~i 593 (988)
T KOG2038|consen 571 IQRVRAFVKRLLQVAVQQQPPFI 593 (988)
T ss_pred HHHHHHHHHHHHHHHHhcCCchh
Confidence 33345667788888776555443
No 87
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.98 E-value=1 Score=42.39 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHhhhChHHHhhhh----HhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 288 NLKYLGLQALSIIAPKHLWAVLENK----DFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 288 NlrYvaL~~L~~Iv~~~p~~v~~h~----~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
|-|+-||-.|..++..-+.-+.+|. .-++.|++|+|..||.-|.+-|+.++
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~ 55 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNIS 55 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5688888888888765554455554 45577999999999999999999885
No 88
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.81 E-value=0.65 Score=43.38 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhccCCchhh-HhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc
Q 040316 112 NQLRKDLNSSNQFEVSLALECLSRIGNVDL-ARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLK 190 (957)
Q Consensus 112 NtLkKDL~s~Np~vr~LALr~Ls~I~tpeL-a~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~ 190 (957)
+...++|+|+.+.+||-||..|.++....- ...- +..++.-+.+.|.|+|+-|=.+|+..++.++..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~------------~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVID------------IPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhh------------HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 566789999999999999999998654322 1111 112233456789999999999999999999998
Q ss_pred CCC
Q 040316 191 DPR 193 (957)
Q Consensus 191 np~ 193 (957)
.|.
T Consensus 74 ~p~ 76 (92)
T PF10363_consen 74 HPD 76 (92)
T ss_pred ChH
Confidence 887
No 89
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.39 E-value=85 Score=41.33 Aligned_cols=128 Identities=12% Similarity=0.115 Sum_probs=84.2
Q ss_pred cCChHHHHHHHHHHHhhccCChH-HHhHHHHHHHHHhhcCCcchHH---HHHHHHHHhhcCCcH----HHHHHHHHHHHH
Q 040316 209 SKNNWLLIKVLKIFAKLATLEPR-LAKRVVEPICEFMRRTEAKSLL---FECIRTVLSSLSEYE----SAVKLAVVKVRE 280 (957)
Q Consensus 209 ~~npWlqIkILkLL~~l~p~ep~-L~~kLl~~L~~lL~~t~a~SVL---yE~I~~Ii~~l~~~~----~li~l~v~~L~~ 280 (957)
+...+.++.+|.++..+.+..+. -..++. .+.+...++.+..+- |..+..++.. +... ..+..+.+.|..
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~d 704 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLD 704 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHH
Confidence 35678888889888888875432 222333 233333332333332 2222223322 1111 223445566666
Q ss_pred hhcCCCchHHHHHHHHHHHHhhhCh----HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 281 FLVDDDPNLKYLGLQALSIIAPKHL----WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 281 fL~ssDpNlrYvaL~~L~~Iv~~~p----~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
-+.+.+.-.++-.|.++..|.+-++ .++..-+..++.++++-|..-|+-|.++|+-|+
T Consensus 705 s~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 705 SFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHH
Confidence 6677788899999999999999888 677777777788889999999999999999998
No 90
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.36 E-value=42 Score=38.69 Aligned_cols=248 Identities=15% Similarity=0.237 Sum_probs=120.3
Q ss_pred hhHHHHHHHHhhcC-------h----HHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHhcCCCCcchhHHHHHHh
Q 040316 13 RDLDDLIKGIRQQQ-------I----KESLFISKAIEEIRREIKSTDL-PTKSAALRKLSYLSSLHGADMSFAAFHAVEV 80 (957)
Q Consensus 13 rsL~dfIr~IR~~k-------~----~E~~~I~~elaEIR~eL~S~d~-~~K~~AL~KLIYL~ML~G~DmS~~~f~VVel 80 (957)
|+=.+++|.+|.+- . .-.+-+.+.+..+|.-|-..+. ....+++..|.. ++. -.| .+..++..
T Consensus 10 KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~-Ei~-~~d---ll~~Li~~ 84 (335)
T PF08569_consen 10 KTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQ-EIY-RSD---LLYLLIRN 84 (335)
T ss_dssp --HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHH-HHH-HHT---HHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHH-HhC---HHHHHHHH
Confidence 45556666665441 1 1134556666777777766532 223333333333 332 111 34445555
Q ss_pred hcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCC-HHHHHHH------HH-hhccCCchhhHhhhHHHHHHh
Q 040316 81 MSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSN-QFEVSLA------LE-CLSRIGNVDLARDLTPEVFTL 152 (957)
Q Consensus 81 msS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~N-p~vr~LA------Lr-~Ls~I~tpeLa~~L~~~V~kl 152 (957)
+..=+|+.|| |+..+..|.++....+.. |.+--+. |. .+.....|++|-....-++.+
T Consensus 85 L~~L~fEsrK--------------dv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 85 LPKLDFESRK--------------DVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp GGGS-HHHHH--------------HHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred hhhCCCcccc--------------cHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 5555555444 455555566666655544 3221111 11 123344677777767777778
Q ss_pred hhhhhHHH------HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 040316 153 LSSNAVRV------CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLA 226 (957)
Q Consensus 153 L~~~AvR~------~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~ 226 (957)
+.++++.. +|.++.+....++-.|.+.|...+-++..++++. +..++ ..-. .|.--.+-+++..
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~----~a~fl---~~n~-d~ff~~~~~Ll~s-- 220 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKL----VAEFL---SNNY-DRFFQKYNKLLES-- 220 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHH----HHHHH---HHTH-HHHHHHHHHHCT---
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHH----HHHHH---HHHH-HHHHHHHHHHccC--
Confidence 88865432 3445667778899999999999999998877642 22221 0000 0110111112111
Q ss_pred cCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 040316 227 TLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAP 302 (957)
Q Consensus 227 p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~ 302 (957)
.+-=..+.-+..|.++|-.-.+..| ...++++ ++-++ .+..+|.++..|++|-|...+...+.
T Consensus 221 -~NYvtkrqslkLL~ellldr~n~~v-------m~~yi~~-~~nLk----l~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 221 -SNYVTKRQSLKLLGELLLDRSNFNV-------MTRYISS-PENLK----LMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHH-------HHHHTT--HHHHH----HHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred -CCeEeehhhHHHHHHHHHchhHHHH-------HHHHHCC-HHHHH----HHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 1111223344455555532122211 2223333 33333 35566788999999999988877665
No 91
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=89.31 E-value=0.11 Score=52.83 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=6.1
Q ss_pred CccchhhHHHHHhh---cCccccccccccCCcCCCC-----CCCCCCCCCCCCchHH
Q 040316 735 SHESTSLLAEHRKR---HGLYYLASEKSEGASNDYP-----PANDPMSQDKLNDDAE 783 (957)
Q Consensus 735 ~~e~~~~~~e~rk~---~~~~yl~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 783 (957)
+.|+....||.|+. ||||||++.+.......+. -+++|+.++.+.++++
T Consensus 2 ~eEEl~rrReaR~~Eq~NNP~YLK~~~~~~~~~~~~~~~~~~e~ipv~~idl~vpL~ 58 (154)
T PF06375_consen 2 DEEELERRREARKAEQENNPHYLKGSPKSSKSYQSSNQYENVEDIPVAEIDLSVPLK 58 (154)
T ss_dssp ------------------------------------------TTS-EEE---SS---
T ss_pred CHHHHHHHHHHHHHHHHcCCceecCCCCCCCCCCCcccCcccccCcccccccCCCee
Confidence 56777888999998 9999999987775443332 5566888888877665
No 92
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.30 E-value=29 Score=43.91 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=105.4
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhc---CCCCcc-----CchHHHHHHHhh---cCChHHHHHHHHHHHhhccCCh
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLK---DPRSYL-----PLAPEFYKILVD---SKNNWLLIKVLKIFAKLATLEP 230 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~---np~~~l-----~Lap~L~~iL~~---~~npWlqIkILkLL~~l~p~ep 230 (957)
.|-|..+|.-.|-.++-.++..++.++.. .|..+. .|+....++|.. ..++=+-+-++++|...+-.-|
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~p 416 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSP 416 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCCh
Confidence 45667777777777777777777777643 333221 233333344432 2344556677788877776656
Q ss_pred HHHh-----HHHHHHHHHhhcC-------------CcchHHHHHHHHHHhhcCCcHHHHHHHHHH---------------
Q 040316 231 RLAK-----RVVEPICEFMRRT-------------EAKSLLFECIRTVLSSLSEYESAVKLAVVK--------------- 277 (957)
Q Consensus 231 ~L~~-----kLl~~L~~lL~~t-------------~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~--------------- 277 (957)
-+++ .|.+.+..+|+.. ..++=+||.+..|+..++..+.-.-.|+..
T Consensus 417 l~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~ 496 (1051)
T KOG0168|consen 417 LLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLW 496 (1051)
T ss_pred HHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccc
Confidence 5443 3445666676532 125668898888887654221100011111
Q ss_pred ---------------HHHhhc--CCCc-----hHHHHHHHHHHHHhhhChHHHhhhhHhhccc----cc-CCCHHHHHHH
Q 040316 278 ---------------VREFLV--DDDP-----NLKYLGLQALSIIAPKHLWAVLENKDFVIKS----LS-DGDYNIKLES 330 (957)
Q Consensus 278 ---------------L~~fL~--ssDp-----NlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~c----L~-D~D~sIR~~A 330 (957)
..+.+. +.|+ .-+-+....=..++...|++++.+...++.. +. ..+++||.+.
T Consensus 497 ~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kc 576 (1051)
T KOG0168|consen 497 QWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKC 576 (1051)
T ss_pred cCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Confidence 111111 0000 0111112333345567788888776655443 33 5788999999
Q ss_pred HHHHhhhcCcccHHHHHHHHH
Q 040316 331 LRLLMSMVSESNVAEISRVLI 351 (957)
Q Consensus 331 LeLL~~Lvne~Nv~~IV~ELl 351 (957)
|..|.+|+-=.|.+.|..-|.
T Consensus 577 L~Ailrlvy~s~seli~slLk 597 (1051)
T KOG0168|consen 577 LSAILRLVYFSNSELIGSLLK 597 (1051)
T ss_pred HHHHHHHHhhCCHHHHHHHHh
Confidence 999999988888665544433
No 93
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=74 Score=40.42 Aligned_cols=304 Identities=18% Similarity=0.219 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC--cchhH-HHHHHhhc------CCCccchh-hhHHHHH
Q 040316 28 KESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGAD--MSFAA-FHAVEVMS------SPQFFYKK-IGYHAVT 97 (957)
Q Consensus 28 ~E~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~D--mS~~~-f~VVelms------S~~~~~KR-lGYLaas 97 (957)
+|.-|=..-++-||+.++..|...|+++..-|+- ....-++ |...+ -++=.+|. |.+...|- ..||..+
T Consensus 354 DeElFED~pleYiRRDlEGsDvdTRRR~a~dlvr-gL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~ta 432 (960)
T KOG1992|consen 354 DEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVR-GLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTA 432 (960)
T ss_pred hHHHhccCHHHHHHHhcccCCcchhHHHHHHHHH-HHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHH
Confidence 3444433467889999999999887776655554 2222222 33333 33334565 55555553 4455433
Q ss_pred hhcC------------CCchHHHHHHHHHHHHhcCC----CHHHHHHHHHhhccCCc---hhhHhhhHHHHHHhhhhhhH
Q 040316 98 QSFN------------DDTPVILLITNQLRKDLNSS----NQFEVSLALECLSRIGN---VDLARDLTPEVFTLLSSNAV 158 (957)
Q Consensus 98 ~~~~------------~~~dlllLatNtLkKDL~s~----Np~vr~LALr~Ls~I~t---peLa~~L~~~V~klL~~~Av 158 (957)
.-.. +--++.-..+|.+.-||.++ +|..++-||..+-..++ ++.+..+.|.+.+
T Consensus 433 laik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~------- 505 (960)
T KOG1992|consen 433 LAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIR------- 505 (960)
T ss_pred HHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHH-------
Confidence 2222 11356667888999999984 46778888888776664 4444444444444
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc----CCCCcc--CchHHHHHHHhh----------cCChHHHHHHHHHH
Q 040316 159 RVCFKRLVENLESSEPVILSAVVGVFCELCLK----DPRSYL--PLAPEFYKILVD----------SKNNWLLIKVLKIF 222 (957)
Q Consensus 159 R~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~----np~~~l--~Lap~L~~iL~~----------~~npWlqIkILkLL 222 (957)
.|..+...|-+=|...+..+..- +...|. .++|....+|.+ .-|+++.=-|+|+|
T Consensus 506 ---------~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii 576 (960)
T KOG1992|consen 506 ---------FLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRII 576 (960)
T ss_pred ---------hccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 44444444433333333333221 122332 234433222221 35788877777877
Q ss_pred Hhhc----cCChHHHhHHHHHHHHHhhcCCc----chHHHHHHHHHHhhcCC-cHHHHHHHHHHHH----HhhcCCCchH
Q 040316 223 AKLA----TLEPRLAKRVVEPICEFMRRTEA----KSLLFECIRTVLSSLSE-YESAVKLAVVKVR----EFLVDDDPNL 289 (957)
Q Consensus 223 ~~l~----p~ep~L~~kLl~~L~~lL~~t~a----~SVLyE~I~~Ii~~l~~-~~~li~l~v~~L~----~fL~ssDpNl 289 (957)
.... |.-|.+...+.+.+... .+|++ +.-+||+|-+++..... +++++......|- ..|...=.++
T Consensus 577 ~i~~~~i~p~~~~~l~~Lteiv~~v-~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~Ef 655 (960)
T KOG1992|consen 577 SILQSAIIPHAPELLRQLTEIVEEV-SKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEF 655 (960)
T ss_pred HhCHHhhhhhhhHHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7643 33344444444444332 33433 47799999888875432 2344433333332 2333222344
Q ss_pred HHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHH
Q 040316 290 KYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEF 361 (957)
Q Consensus 290 rYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~ 361 (957)
-=-++..+..++..+-.-+-+...-++.+|-.| ..- -...|+..+|+-|..++......+
T Consensus 656 iPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp-~lW-----------~r~gNipalvrLl~aflk~g~~~~ 715 (960)
T KOG1992|consen 656 IPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSP-NLW-----------KRSGNIPALVRLLQAFLKTGSQIV 715 (960)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCH-HHH-----------hhcCCcHHHHHHHHHHHhcCchhh
Confidence 344666666666654333333344444444444 111 234677777777777776654433
No 94
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=26 Score=40.56 Aligned_cols=208 Identities=15% Similarity=0.124 Sum_probs=101.5
Q ss_pred HHhcCCCHHHHHHHHHhhccCCchhhHh--------hhHHHHHHhhhhh----------hHHH---------------HH
Q 040316 116 KDLNSSNQFEVSLALECLSRIGNVDLAR--------DLTPEVFTLLSSN----------AVRV---------------CF 162 (957)
Q Consensus 116 KDL~s~Np~vr~LALr~Ls~I~tpeLa~--------~L~~~V~klL~~~----------AvR~---------------~~ 162 (957)
-=+.+.|+-++-.+-+++++|....-++ .++|.+..++.+. |+|. .+
T Consensus 215 sll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~l 294 (550)
T KOG4224|consen 215 SLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSL 294 (550)
T ss_pred hhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCc
Confidence 3456678878878888888887755442 2455555555551 2321 14
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHh--hhcCCCCc--cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH---
Q 040316 163 KRLVENLESSEPVILSAVVGVFCEL--CLKDPRSY--LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR--- 235 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI--~~~np~~~--l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k--- 235 (957)
|.+.++|.++-.-.+.+.+..+-.| .+-|.... -.+...|+++|.-..|+=.|+.....|..++-...+-.+.
T Consensus 295 P~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e 374 (550)
T KOG4224|consen 295 PLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE 374 (550)
T ss_pred hHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh
Confidence 6677777666555566666666333 33333221 1123446777766666767777777777665521111111
Q ss_pred --HHHHHHHHhhcCCcchHHHHHHHHHHhh-cCCc-HH-HH-HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHh
Q 040316 236 --VVEPICEFMRRTEAKSLLFECIRTVLSS-LSEY-ES-AV-KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVL 309 (957)
Q Consensus 236 --Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~-l~~~-~~-li-~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~ 309 (957)
-++.+.+++.- ..-+|--|..-+|... +.+. .+ +. .-.+..|..++.+...+++=-+-.+|..+... +
T Consensus 375 sgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~-----v 448 (550)
T KOG4224|consen 375 SGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD-----V 448 (550)
T ss_pred cCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh-----h
Confidence 12333344332 1122222221111111 1111 11 11 11233344444444555555444444444432 4
Q ss_pred hhhHhhcccccCCCHHHHHH
Q 040316 310 ENKDFVIKSLSDGDYNIKLE 329 (957)
Q Consensus 310 ~h~~~Il~cL~D~D~sIR~~ 329 (957)
+|+..|++|.+.|...|+-+
T Consensus 449 ~~YarviEawd~P~~gi~g~ 468 (550)
T KOG4224|consen 449 EHYARVIEAWDHPVQGIQGR 468 (550)
T ss_pred HHHHHHHHHhcCcchhHHHH
Confidence 56677777777775555444
No 95
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.60 E-value=13 Score=41.55 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=70.4
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcc
Q 040316 238 EPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIK 317 (957)
Q Consensus 238 ~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~ 317 (957)
..+.+-+++ ....|--.+++|+--+.--+.+.....+..+...+...+..+|-++|.++..++..|..- ++.
T Consensus 30 ~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~-------~~~ 101 (298)
T PF12719_consen 30 SLILPAVQS-SDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID-------IFD 101 (298)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch-------hcc
Confidence 344455555 334555555554432211113444445555666666679999999999999998877521 222
Q ss_pred cccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 318 SLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 318 cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
...+++ .......+++-|.+++...+++.+..++..++.+.-
T Consensus 102 ~~~~~~---------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 102 SESDND---------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred chhccC---------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 222322 555566777888888888888888888877766543
No 96
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.38 E-value=54 Score=37.78 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=58.9
Q ss_pred CchHHHHHHHHHHHHhhhChHHHhh-----hhHhhcccccC-CCHHH---HHHHHHHHhhhcCcccHHH-HHH-----HH
Q 040316 286 DPNLKYLGLQALSIIAPKHLWAVLE-----NKDFVIKSLSD-GDYNI---KLESLRLLMSMVSESNVAE-ISR-----VL 350 (957)
Q Consensus 286 DpNlrYvaL~~L~~Iv~~~p~~v~~-----h~~~Il~cL~D-~D~sI---R~~ALeLL~~Lvne~Nv~~-IV~-----EL 350 (957)
||++---.+.+|..|+-++ ++.+. -.+.++.|++| .+... -+.+|.+|.+++-.+.++. ||+ .+
T Consensus 255 dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKI 333 (461)
T ss_pred CccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHH
Confidence 5787777777777777544 22222 46788899987 34444 4788999999987776655 442 22
Q ss_pred HHHhh--hcChHHHHHHHHHHHHHHhh
Q 040316 351 INYAL--KSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 351 l~yl~--~sD~~~r~elI~aI~~ic~~ 375 (957)
..-+. ..|+.+..++...|..+|-+
T Consensus 334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 334 ITLALRHSDDPLVIQEVMAIISILCLR 360 (461)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhc
Confidence 22222 24677888888888888877
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.34 E-value=40 Score=39.32 Aligned_cols=219 Identities=16% Similarity=0.165 Sum_probs=129.3
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh---HHHhhhhHhhcc-ccc-CC-CHHHHHHHHHHHhhhcCccc-H-
Q 040316 272 KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL---WAVLENKDFVIK-SLS-DG-DYNIKLESLRLLMSMVSESN-V- 343 (957)
Q Consensus 272 ~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p---~~v~~h~~~Il~-cL~-D~-D~sIR~~ALeLL~~Lvne~N-v- 343 (957)
......++.++.++++.+|-.|++.+..++.... .+++-|.+.|+. ||+ |. ...=|.+||.++-.+.+-.+ .
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 4455566655555559999999998877765332 334446555543 555 32 22348899999988876632 3
Q ss_pred ---HHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccc---cchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhc
Q 040316 344 ---AEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVI---VDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRV 417 (957)
Q Consensus 344 ---~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~---~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rv 417 (957)
..|++-+..-+...++.++.-++..++++|-.+ |+.+ .-+.|-++.+++ +...+.+.+...+..++ ..
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG~~~L~~~l~d----~~~~~~~~l~~~lL~lL-d~ 177 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGGIRVLLRALID----GSFSISESLLDTLLYLL-DS 177 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCCHHHHHHHHHh----ccHhHHHHHHHHHHHHh-CC
Confidence 678888999888899999999999999998873 5432 233444444433 21124555555555554 45
Q ss_pred CcchHHHH-----HHHHHHhcCCcc---cCCC---chHHHHHHHhhhhccCCCCCC---CHHHHHHHHhcccccCCCHHH
Q 040316 418 KDVRPALV-----HVCRNLLIDPAL---LGNP---FLHRILSAAAWVSGEYVEFSR---NPFELMEALLQPRTNLLLPSI 483 (957)
Q Consensus 418 p~ir~~av-----~~l~~lL~d~~~---l~~~---~~~~~l~a~aWIlGEY~~~i~---~p~~iL~~LL~~~~~~es~~V 483 (957)
|..|.++. ..+..-+.|... .++. .......+++-++--+..++. +...-++.|+. .+....+++
T Consensus 178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~-~L~~p~~~i 256 (371)
T PF14664_consen 178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVD-SLRLPNPEI 256 (371)
T ss_pred cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHH-HHcCCCHHH
Confidence 66665432 233333333210 0110 112233445555555544431 22245555555 345567889
Q ss_pred HHHHHHHHHHHHHH
Q 040316 484 RAVYVQSVFKVLIF 497 (957)
Q Consensus 484 q~~iLtAl~Klf~~ 497 (957)
|-.+|..+..+|--
T Consensus 257 r~~Ildll~dllri 270 (371)
T PF14664_consen 257 RKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999888754
No 98
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=88.16 E-value=73 Score=39.01 Aligned_cols=126 Identities=11% Similarity=0.145 Sum_probs=75.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhc-----ccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhc
Q 040316 283 VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVI-----KSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKS 357 (957)
Q Consensus 283 ~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il-----~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~s 357 (957)
.++|-+++..+.-+|.+|+.-+.++++.+...-+ ...+.++..|+..|+|.-..+|-++|=..... +|+...
T Consensus 231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~---~~~pe~ 307 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMED---KYLPEV 307 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHH---hhcccC
Confidence 5778899999999999999888777776655433 23457778899999999989998887554432 344433
Q ss_pred ---ChHHHHH----HHHHHHHHHhhhhcccccchHHHHHH----HHHhh-ccCCcchHHHHHHHHHH
Q 040316 358 ---DPEFCNQ----ILGSILSTCCRNLYEVIVDFDWYASL----LGEMV-RIPHCQKGEEIEHQIID 412 (957)
Q Consensus 358 ---D~~~r~e----lI~aI~~ic~~~~y~~~~dfeWyvdv----Ll~Ll-~~~~~~v~~eI~~~L~d 412 (957)
+..|.+. ++--|+.+-++.... ..+.+|-+.. .++|. ...|+.+..-+|..+-+
T Consensus 308 p~qn~~fa~aav~dvlP~lL~LL~~q~ed-~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEq 373 (858)
T COG5215 308 PAQNHGFARAAVADVLPELLSLLEKQGED-YYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQ 373 (858)
T ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCC-ccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence 2234443 344555544442221 2233676532 33322 34455544444444433
No 99
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.04 E-value=43 Score=37.18 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=76.8
Q ss_pred CCCchHHHHHHHHHHHHhhhChHHHhh----hhHhhccccc-CCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHh----
Q 040316 284 DDDPNLKYLGLQALSIIAPKHLWAVLE----NKDFVIKSLS-DGDYNIKLESLRLLMSMVSESNVAEISRVLINYA---- 354 (957)
Q Consensus 284 ssDpNlrYvaL~~L~~Iv~~~p~~v~~----h~~~Il~cL~-D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl---- 354 (957)
+--+..||.++..|..++..+...++. +...|+.+.+ +.|+--=+.+.+|+..+...-.+...+++|.+-+
T Consensus 93 ~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYF 172 (262)
T PF14500_consen 93 SLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYF 172 (262)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhhee
Confidence 345678999999999998888765543 4444555554 6677766777777776665555455555554433
Q ss_pred hh------cCh-H-HHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcC
Q 040316 355 LK------SDP-E-FCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVK 418 (957)
Q Consensus 355 ~~------sD~-~-~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp 418 (957)
.- .|+ . -+.++..++ .-|-.-.+.++ .|++..|++=+..+...+..++...+..-+.+++
T Consensus 173 PI~F~pp~~dp~~IT~edLk~~L-~~cl~s~~~fa---~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 173 PITFRPPPNDPYGITREDLKRAL-RNCLSSTPLFA---PFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred eeeeeCCCCCCCCCCHHHHHHHH-HHHhcCcHhhH---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 21 122 1 223333333 23332122222 4688888877766655566677777776666655
No 100
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=87.67 E-value=28 Score=40.55 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=47.4
Q ss_pred HHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhc
Q 040316 299 IIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKS 357 (957)
Q Consensus 299 ~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~s 357 (957)
+.-+..|.+-..-++--+.|.+|.|..||++|+.=|-.+|..+++..|..+|.+-+.++
T Consensus 50 ~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~ 108 (460)
T KOG2213|consen 50 RFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKA 108 (460)
T ss_pred HHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHH
Confidence 33345666666666666788899999999999999999999999999888887777653
No 101
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.57 E-value=1e+02 Score=39.98 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhccCCchhhHhhhHHHHH-HhhhhhhH---HHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcC
Q 040316 123 QFEVSLALECLSRIGNVDLARDLTPEVF-TLLSSNAV---RVCFKRLVENLESSEPVILSAVVGVFCELCLKD 191 (957)
Q Consensus 123 p~vr~LALr~Ls~I~tpeLa~~L~~~V~-klL~~~Av---R~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n 191 (957)
+++|..-|-++... |++.|.....++ .+++++.- ...++++...|...+..++..|+.++.++++..
T Consensus 88 ~~irenIl~~iv~~--p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 88 AVIRENILETIVQV--PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred HHHHHHHHHHHHhC--chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 46777777777664 888877776666 44555332 345678888999999999999999999999854
No 102
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.44 E-value=1 Score=44.02 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=49.2
Q ss_pred HHHHHHHhh-cCCCchHHHHHHHHHHHHhhhChH---HHhh--hhHhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 274 AVVKVREFL-VDDDPNLKYLGLQALSIIAPKHLW---AVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 274 ~v~~L~~fL-~ssDpNlrYvaL~~L~~Iv~~~p~---~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
.+.+|..+| .+.|+..--||+.-|..++..+|. ++.. -+..|+.+++++|+.||..||..+..|+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 556677777 556888888888888888888884 4433 4678899999999999999998887664
No 103
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.18 E-value=1.3e+02 Score=40.67 Aligned_cols=162 Identities=11% Similarity=0.058 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhhh--cCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhcc---C
Q 040316 324 YNIKLESLRLLMSM--VSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRI---P 398 (957)
Q Consensus 324 ~sIR~~ALeLL~~L--vne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~---~ 398 (957)
.+++..--++++.+ +.++=+-.|+.+|..-+...+.++|.+++.-+|.+-....-. -++-|-++...++.- .
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~---l~~~~~~~~~~fl~r~~D~ 312 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQ---LSETYDDLWSAFLGRFNDI 312 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhh---hcccchHHHHHHHHHhccC
Confidence 34555556666654 566667788899999999999999999999998876643211 123344554444421 1
Q ss_pred CcchHHHHHHHHHHHHHhcCcchHHHHHHHHH--HhcCCcccCCCchHHHHHHHhhhhccCCCC-CC-CHHHHHHHHhcc
Q 040316 399 HCQKGEEIEHQIIDIAMRVKDVRPALVHVCRN--LLIDPALLGNPFLHRILSAAAWVSGEYVEF-SR-NPFELMEALLQP 474 (957)
Q Consensus 399 ~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~--lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~-i~-~p~~iL~~LL~~ 474 (957)
...+.-+++....+++..+|+........+.. ...|. ...+...++...-+.... +. .|. ++..+. .
T Consensus 313 ~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~-------~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~-e 383 (1266)
T KOG1525|consen 313 SVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDE-------DVRVRTQVVIVACDVMKFKLVYIPL-LLKLVA-E 383 (1266)
T ss_pred ChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCCh-------hhhheeeEEEEEeehhHhhhhhhHH-HHHHHH-H
Confidence 22355677888888888888765544333221 12221 111122222222222211 11 244 666443 3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHH
Q 040316 475 RTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 475 ~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
|..+=-..||-+.+..++++|-+
T Consensus 384 R~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 384 RLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Confidence 66777889999999999999996
No 104
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=86.46 E-value=11 Score=39.57 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=75.3
Q ss_pred hhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh---HHHHHHHHH
Q 040316 167 ENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK---RVVEPICEF 243 (957)
Q Consensus 167 elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~---kLl~~L~~l 243 (957)
-.+.|+++.|-.+|+.++..+...- +.|+ ..-.+...++. .|++....++. .+...|...
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L-------~~Ae~~~~~~~---------sFtslS~tLa~~i~~lH~~Ll~~ 109 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEGS-KPFL-------AQAEESKGPSG---------SFTSLSSTLASMIMELHRGLLLA 109 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHcc-HHHH-------HHHHhcCCCCC---------CcccHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999997652 2221 11111010110 11121222222 233444555
Q ss_pred hhcCCcchHHHHHHHHHHhhc---CC---cHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh
Q 040316 244 MRRTEAKSLLFECIRTVLSSL---SE---YESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL 305 (957)
Q Consensus 244 L~~t~a~SVLyE~I~~Ii~~l---~~---~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p 305 (957)
+++-.+.+++-++++++.... |. ...++..+++.++.++.+.|+|++-.+|.+|..++...+
T Consensus 110 L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 110 LQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 555555666666666554432 21 246788899999999999999999999999999886543
No 105
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.98 E-value=38 Score=36.79 Aligned_cols=85 Identities=13% Similarity=0.017 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhhChHHHhhhhHhhcccc-cCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHH
Q 040316 289 LKYLGLQALSIIAPKHLWAVLENKDFVIKSL-SDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILG 367 (957)
Q Consensus 289 lrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL-~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~ 367 (957)
..|..-.++.-++...|+--.+-...|..|| .+.+..++..+|+.|..+| +.-+.++..-..--..+-+.+.+..+++
T Consensus 100 ~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc-~~~vvd~~s~w~vl~~~l~~~~rp~v~~ 178 (234)
T PF12530_consen 100 CLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLC-EAEVVDFYSAWKVLQKKLSLDYRPLVLK 178 (234)
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHhcCCccchHHHH
Confidence 3343344556666666665455555666677 6777888999999998888 3333333333322222224455556666
Q ss_pred HHHHHHh
Q 040316 368 SILSTCC 374 (957)
Q Consensus 368 aI~~ic~ 374 (957)
.++.+|.
T Consensus 179 ~l~~l~~ 185 (234)
T PF12530_consen 179 SLCSLFA 185 (234)
T ss_pred HHHHHHH
Confidence 5554443
No 106
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=85.24 E-value=74 Score=36.17 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=108.6
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhhcCCC-C-----ccCchHHHHHHHhhcCChHHHHHHHHHHHhhccC------ChH
Q 040316 164 RLVENLESSEPVILSAVVGVFCELCLKDPR-S-----YLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL------EPR 231 (957)
Q Consensus 164 kL~elL~D~D~sVv~AAv~vL~EI~~~np~-~-----~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~------ep~ 231 (957)
...+.|.++....-.+|+..|+.+...+.. . +..+...+.+.++.... =-+...+++++.++-. ...
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHH
Confidence 344566778888889999999999876643 1 12345555666655332 2344455555554332 245
Q ss_pred HHhHHHHHHHHHhhcCCcchHH-HHHHHH--HHhhc-CCcHHHHHHHHHHHHH-----hhc-C---------CCchHHHH
Q 040316 232 LAKRVVEPICEFMRRTEAKSLL-FECIRT--VLSSL-SEYESAVKLAVVKVRE-----FLV-D---------DDPNLKYL 292 (957)
Q Consensus 232 L~~kLl~~L~~lL~~t~a~SVL-yE~I~~--Ii~~l-~~~~~li~l~v~~L~~-----fL~-s---------sDpNlrYv 292 (957)
+.+.+.++|..++.-.....-+ -.|+.+ ++.++ ....+.+..+++.+.. .+. + .++.+.-.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 6667777787777643322112 233322 11211 2223334433344431 111 1 13568889
Q ss_pred HHHHHHHHhhhCh-----HHHhhhhHhhcccccCCCHHHHHHH---HHHHhhhcCc-------ccHHHHHHHHHHHhhh
Q 040316 293 GLQALSIIAPKHL-----WAVLENKDFVIKSLSDGDYNIKLES---LRLLMSMVSE-------SNVAEISRVLINYALK 356 (957)
Q Consensus 293 aL~~L~~Iv~~~p-----~~v~~h~~~Il~cL~D~D~sIR~~A---LeLL~~Lvne-------~Nv~~IV~ELl~yl~~ 356 (957)
||.+-..|+..-| ..+..+...|..+|+.+|..||.-| |-+||-+... .|...++..|.....+
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~d 284 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATD 284 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHh
Confidence 9999888876544 3466788889999999999999954 5555555442 3444444444444443
No 107
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.82 E-value=21 Score=43.46 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh----ChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhh
Q 040316 269 SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK----HLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSM 337 (957)
Q Consensus 269 ~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~----~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~L 337 (957)
++++..+..+.+++.++|.++||-.|+.+..++.. +-.++.--...+...+-|....+|+.|+-.|...
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45566666666777888999999999888888753 2345555566666666787788888888887655
No 108
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=84.12 E-value=49 Score=38.08 Aligned_cols=207 Identities=12% Similarity=0.128 Sum_probs=122.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCC--Ccc---CchHHHHHHHhhcCChHHHHHHHH----HHHhhccC----
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPR--SYL---PLAPEFYKILVDSKNNWLLIKVLK----IFAKLATL---- 228 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~--~~l---~Lap~L~~iL~~~~npWlqIkILk----LL~~l~p~---- 228 (957)
.|.+..+|.+.+-.|.--|+=+|-.|+-..+. .|. .....+..+|..+ -..+++|+ .|..+++.
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss---~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS---AIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc---cchHHHHHHhHHHHHHhhCCCCCC
Confidence 57788888888888888888888777765443 110 1112233333321 11223333 34455542
Q ss_pred -ChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHH-----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 040316 229 -EPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAV-----KLAVVKVREFLVDDDPNLKYLGLQALSIIAP 302 (957)
Q Consensus 229 -ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li-----~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~ 302 (957)
+-....+.++.|..++.+ ...-|+..+.=.|.+..+...+-+ .-+..+|..+|++.+.+++--+|+++..|+.
T Consensus 236 P~w~~isqalpiL~KLiys-~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 236 PDWSNISQALPILAKLIYS-RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 122344566777777655 345555555554433222122222 1255678888889999999999999998875
Q ss_pred hC---hHHHhh--hhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHH---H-----HHHHHHhhhcChHHHHHHHHHH
Q 040316 303 KH---LWAVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEI---S-----RVLINYALKSDPEFCNQILGSI 369 (957)
Q Consensus 303 ~~---p~~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~I---V-----~ELl~yl~~sD~~~r~elI~aI 369 (957)
-. ..++.. ....|...|+.|-..||+.|.=.+..++ ..|.+.| + .-|.+-+..++...+.|++-+|
T Consensus 315 G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 315 GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred cCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222222 2344445578888899999988888874 4444332 2 3455666666777888888888
Q ss_pred HHHH
Q 040316 370 LSTC 373 (957)
Q Consensus 370 ~~ic 373 (957)
....
T Consensus 394 sNat 397 (526)
T COG5064 394 SNAT 397 (526)
T ss_pred Hhhh
Confidence 7553
No 109
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.99 E-value=1.8e+02 Score=39.60 Aligned_cols=169 Identities=12% Similarity=0.186 Sum_probs=101.7
Q ss_pred CCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHH-----------HhHHHHH
Q 040316 171 SSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRL-----------AKRVVEP 239 (957)
Q Consensus 171 D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L-----------~~kLl~~ 239 (957)
..-+.|-..+++++..+.+..++...+.+|.|+-.|.+ .|.+.||.. ...-++.
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~---------------~~s~lE~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLN---------------AYSELEPQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHH---------------HccccchHHHHHHHHhhhhhHHHHHHH
Confidence 44556777789999999999888777777777655543 233333321 0111222
Q ss_pred HHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHhhhChHHH----hhhhHh
Q 040316 240 ICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVD-DDPNLKYLGLQALSIIAPKHLWAV----LENKDF 314 (957)
Q Consensus 240 L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~s-sDpNlrYvaL~~L~~Iv~~~p~~v----~~h~~~ 314 (957)
+.--. .-.|=++|+|+-++.+++ .+.+...+.++..++.+ =.-+.|--+-.-+..|+.+.+.=. -.....
T Consensus 1207 ~R~s~---aksspmmeTi~~ci~~iD--~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~a 1281 (1702)
T KOG0915|consen 1207 LRASA---AKSSPMMETINKCINYID--ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRA 1281 (1702)
T ss_pred HHHhh---hcCCcHHHHHHHHHHhhh--HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHH
Confidence 21111 224568999998888654 35556667777776632 233444433344444444444323 334445
Q ss_pred hcccccCCCHHHHHH---HHHHHhhhcCcccHHHHHHHHHH-HhhhcCh
Q 040316 315 VIKSLSDGDYNIKLE---SLRLLMSMVSESNVAEISRVLIN-YALKSDP 359 (957)
Q Consensus 315 Il~cL~D~D~sIR~~---ALeLL~~Lvne~Nv~~IV~ELl~-yl~~sD~ 359 (957)
.+.-+.|.+.+||+. |.-.|.+...++-.+..+.+++. |+.+.+.
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC
Confidence 555678999999884 77788888888888888888775 4444443
No 110
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.01 E-value=4.2 Score=41.08 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=59.3
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh------hhHhhcccccC
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE------NKDFVIKSLSD 321 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~Il~cL~D 321 (957)
.+-++.++.+-.|=. .+...+.|+..|++=|.+.+||+.+.||..|-.+++.....|.. +.+.+...+++
T Consensus 16 ~dw~~il~icD~I~~----~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 16 ENWGLILDVCDKVKS----DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred cCHHHHHHHHHHHhc----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc
Confidence 455677776665432 12334668888888888999999999999999999876544432 33444455555
Q ss_pred -CCHHHHHHHHHHHhhh
Q 040316 322 -GDYNIKLESLRLLMSM 337 (957)
Q Consensus 322 -~D~sIR~~ALeLL~~L 337 (957)
.+..||.+.|+++...
T Consensus 92 ~~~~~Vk~kil~li~~W 108 (144)
T cd03568 92 RVHPTVKEKLREVVKQW 108 (144)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 6678888888877554
No 111
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.94 E-value=23 Score=43.97 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHHh
Q 040316 601 VELALGPLSRSHDVEIQERARNVLGFTDLIEQEI 634 (957)
Q Consensus 601 i~~~l~~~~~s~~~EVQERA~~~~~l~~l~~~~~ 634 (957)
+..-+-|-+.|.++-+.|-+..-+++..|...++
T Consensus 540 ~~sLi~pavrs~~l~iRelglKOGglccLln~dl 573 (892)
T KOG2025|consen 540 ANSLIFPAVRSLVLSIRELGLLCLGLCCLLNGDL 573 (892)
T ss_pred HHHHHHHHHHhcCccHHhhhhhhhhhhhhcchhh
Confidence 3344567788889999999999998888875544
No 112
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.63 E-value=4.8 Score=39.84 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=56.1
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh------hhHhhcccccC
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE------NKDFVIKSLSD 321 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~Il~cL~D 321 (957)
.+.++.+|.+..|=. .+...+.|+..|++-|.+++|++++.||..+-.++......|.. +...++..+..
T Consensus 16 ~D~~~il~icd~I~~----~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 16 PDWALNLELCDLINL----KPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred ccHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCC
Confidence 345666666655422 12334668888888888999999999999999999876543322 23334444433
Q ss_pred ---CCHHHHHHHHHHHhhh
Q 040316 322 ---GDYNIKLESLRLLMSM 337 (957)
Q Consensus 322 ---~D~sIR~~ALeLL~~L 337 (957)
.+..||.++|+++...
T Consensus 92 ~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 92 SPKYDPKVREKALELILAW 110 (133)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4567777777776543
No 113
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.47 E-value=1.5e+02 Score=37.68 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=30.8
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC-----ccCchHHHHHHHhh
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKDPRS-----YLPLAPEFYKILVD 208 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~-----~l~Lap~L~~iL~~ 208 (957)
.++..+|.|.---+--.|+-+|+|+.+.++.. |....-+||.++.+
T Consensus 169 S~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 169 SKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred HHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777777888888888888763 33334455666654
No 114
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.41 E-value=56 Score=40.22 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh
Q 040316 111 TNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS 155 (957)
Q Consensus 111 tNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~ 155 (957)
+.+++-|+.+.++|+|-..=|+.+.+...-=++.+.|.+..+..+
T Consensus 283 vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~S 327 (975)
T COG5181 283 VSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGS 327 (975)
T ss_pred eeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcC
Confidence 346778999999999988777777655544445555665554444
No 115
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.49 E-value=59 Score=34.04 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhh---hChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc
Q 040316 269 SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAP---KHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 269 ~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~---~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne 340 (957)
.+++.-.+.+..+..+++..+|+.|++.+..++. .||.- ....++.+..||+..||.+|..++..+..+
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~---cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ---CVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH---HHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3445555555556667788888888888877765 46643 345666667788888888888888777544
No 116
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=81.41 E-value=38 Score=42.23 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhhccCC-hH-HHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhc-CCCch
Q 040316 212 NWLLIKVLKIFAKLATLE-PR-LAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLV-DDDPN 288 (957)
Q Consensus 212 pWlqIkILkLL~~l~p~e-p~-L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~-ssDpN 288 (957)
|=-+-..++-|....|.= ++ +..|+++.+...+..+..-.++.-++..|-++.+. .+......-.|...++ ...-.
T Consensus 287 n~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~-~~~~~~~~p~l~pi~~~~~~~~ 365 (700)
T KOG2137|consen 287 NSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQ-NEFGPKMLPALKPIYSASDPKQ 365 (700)
T ss_pred cHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccch-hhhhhhhhHHHHHHhccCCccc
Confidence 333444455555544432 22 45677888777775544456666677666654332 2333344555555554 44456
Q ss_pred HHHHHHHHHHHHhhh-Ch-HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHH
Q 040316 289 LKYLGLQALSIIAPK-HL-WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQIL 366 (957)
Q Consensus 289 lrYvaL~~L~~Iv~~-~p-~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI 366 (957)
+..+.++.+..|..+ ++ ++.+.-...++.|++|.|+.|..++|.++-.. .|.+.| ...++.++
T Consensus 366 ~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv----------~e~iD~-----~~vk~~il 430 (700)
T KOG2137|consen 366 ALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTV----------AESIDV-----PFVKQAIL 430 (700)
T ss_pred chhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH----------HHhccH-----HHHHHHHH
Confidence 677778888777764 34 45555678899999999999999999887543 222221 23455566
Q ss_pred HHHHHHHhh
Q 040316 367 GSILSTCCR 375 (957)
Q Consensus 367 ~aI~~ic~~ 375 (957)
-+|-.+|-+
T Consensus 431 P~l~~l~~~ 439 (700)
T KOG2137|consen 431 PRLKNLAFK 439 (700)
T ss_pred HHhhcchhc
Confidence 677666544
No 117
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.55 E-value=7.7 Score=36.29 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=38.4
Q ss_pred HhhcccccCCCHHHHHHHHHHHhhhcCccc-----HHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 313 DFVIKSLSDGDYNIKLESLRLLMSMVSESN-----VAEISRVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 313 ~~Il~cL~D~D~sIR~~ALeLL~~Lvne~N-----v~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
..++.-+.||.+.||-.+|.+|..++...+ +..|+.-++.++.+.|+-+--.+|+.+..+|..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 344455666767777777777776665544 455566666666666655555666666666553
No 118
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=79.56 E-value=64 Score=38.10 Aligned_cols=192 Identities=13% Similarity=0.132 Sum_probs=105.6
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccC-----ChH
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL-----EPR 231 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~-----ep~ 231 (957)
.+.+|.+++..+|+.-......++..|..+.+... ..+...|++.+.+...+.+...+|++|+.+... .+.
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 45678888888888888888888888877665532 122334444455567888888999998887542 222
Q ss_pred HHhHHHHHHHHHhhcCCcc----hHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC-hH
Q 040316 232 LAKRVVEPICEFMRRTEAK----SLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKH-LW 306 (957)
Q Consensus 232 L~~kLl~~L~~lL~~t~a~----SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~-p~ 306 (957)
-..-+...+.++... ... .-+..|+..++. ..+++...++..|.++-=.+++--.-+-|.-+..|+..- |.
T Consensus 214 h~~fl~~vllPLh~~-~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKS-PHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp HHHHHHHTTGGGGGS-TGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHH
Confidence 222233444444433 221 234445554443 234455555555555443345555556666666666533 33
Q ss_pred HHh----hhhHhhcccccCCCHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHhhh
Q 040316 307 AVL----ENKDFVIKSLSDGDYNIKLESLRLLMSM----VSESNVAEISRVLINYALK 356 (957)
Q Consensus 307 ~v~----~h~~~Il~cL~D~D~sIR~~ALeLL~~L----vne~Nv~~IV~ELl~yl~~ 356 (957)
-+. +-...+-.|++.+...|..+||.+.-.= .=.+|...|+.-+...+..
T Consensus 290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYR 347 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHH
Confidence 333 3345556688999999999998875210 0024445555555554443
No 119
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=78.31 E-value=9.6 Score=48.44 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=87.3
Q ss_pred CCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHH---HHHHHHHHHhhhcChH
Q 040316 284 DDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVA---EISRVLINYALKSDPE 360 (957)
Q Consensus 284 ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~---~IV~ELl~yl~~sD~~ 360 (957)
+.+--+|--...+|..|+..+...+..|+..|-.||.||++-||+.++-+|..|...+-++ .+.=.++--+.++.++
T Consensus 980 ~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~ed 1059 (1529)
T KOG0413|consen 980 NTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANED 1059 (1529)
T ss_pred hhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHH
Confidence 3444455445556677777888899999999999999999999999999999998876543 3444455555667788
Q ss_pred HHHHHHHHHHHHHhhhhcccc-cchHHHHHHHHHhhccCC--cchHHHHHHHHHHHHHhcCcchHHH
Q 040316 361 FCNQILGSILSTCCRNLYEVI-VDFDWYASLLGEMVRIPH--CQKGEEIEHQIIDIAMRVKDVRPAL 424 (957)
Q Consensus 361 ~r~elI~aI~~ic~~~~y~~~-~dfeWyvdvLl~Ll~~~~--~~v~~eI~~~L~dIi~rvp~ir~~a 424 (957)
+|+..=.-|+.+-....|-+. ..|--|+-+|-+.-.+.| .+-.++-..++..|-.+.|-.|+.-
T Consensus 1060 Ir~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~~~h~g~~n~~qs~r~~~~fSi~G~d~~aR~~R 1126 (1529)
T KOG0413|consen 1060 IRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQARRHVGVGNHDQSDRGQVDFSIGGGDPLARPSR 1126 (1529)
T ss_pred HHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhCCCCCcccchhceeEeecCCCcccchhh
Confidence 887665555554443334322 232233333333222222 1233455566666666666555443
No 120
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.14 E-value=62 Score=33.21 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC-hHHHhhhhHhh----cccccCCC-HHHHHHHHHHHhhhcCcc
Q 040316 268 ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKH-LWAVLENKDFV----IKSLSDGD-YNIKLESLRLLMSMVSES 341 (957)
Q Consensus 268 ~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~-p~~v~~h~~~I----l~cL~D~D-~sIR~~ALeLL~~Lvne~ 341 (957)
...+...+.++..+|.++++.-|+.|+..+..++... ++.+.+|.... +..|..+| ..++..++..|.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~------ 93 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLT------ 93 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH------
Confidence 3456667888999999999999999999999999887 78886665544 34444322 455666666553
Q ss_pred cHHHHHHHHHHHhhhcChHHHHHHH-HHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCc-
Q 040316 342 NVAEISRVLINYALKSDPEFCNQIL-GSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKD- 419 (957)
Q Consensus 342 Nv~~IV~ELl~yl~~sD~~~r~elI-~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~- 419 (957)
.|+.++..- +++.+|+. ..+. . ++..+++++.- .+....+...+..++.++|.
T Consensus 94 -------~l~~~~~~~-p~l~Rei~tp~l~------------~---~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 94 -------RLFDLIRGK-PTLTREIATPNLP------------K---FIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred -------HHHHHhcCC-CchHHHHhhccHH------------H---HHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 344444433 34444433 2221 1 45555555553 45677888888889988885
Q ss_pred chHHH
Q 040316 420 VRPAL 424 (957)
Q Consensus 420 ir~~a 424 (957)
.|++.
T Consensus 149 ~rp~~ 153 (165)
T PF08167_consen 149 FRPFA 153 (165)
T ss_pred ccchH
Confidence 35553
No 121
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=76.71 E-value=8.7 Score=31.52 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhccCC--chhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHH
Q 040316 123 QFEVSLALECLSRIG--NVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCE 186 (957)
Q Consensus 123 p~vr~LALr~Ls~I~--tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~E 186 (957)
|.+|.-|+.+|+++. .++......+ .+++.|..+|.|+++.|..+|+.+|-.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~------------~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP------------ELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH------------HHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH------------HHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 467888999999864 2344433333 345667789999999999999887753
No 122
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=76.70 E-value=79 Score=41.77 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=49.3
Q ss_pred HhhcccccCCCHHHHHHHHHHHhhhc----CcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 313 DFVIKSLSDGDYNIKLESLRLLMSMV----SESNVAEISRVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 313 ~~Il~cL~D~D~sIR~~ALeLL~~Lv----ne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
..+..+|.|+++.+|+.-|+=|.-|| .+++=..|+..|+.|+.+.|..+|.....+|..+|.
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi 646 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSI 646 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEE
Confidence 44555688998888888777666665 566668899999999999999999999998876653
No 123
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.03 E-value=81 Score=35.54 Aligned_cols=103 Identities=12% Similarity=0.201 Sum_probs=60.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-c---CchHHHHHHHhhcCC---hHHHHHHHHHHHhhccCCh-H-
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-L---PLAPEFYKILVDSKN---NWLLIKVLKIFAKLATLEP-R- 231 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-l---~Lap~L~~iL~~~~n---pWlqIkILkLL~~l~p~ep-~- 231 (957)
.|..+...|..+|..+...|+.++..+....+... . ..++.+++.|.+..+ .=.+--.+++|+.+.+.++ +
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 45566668888899999999999999988776533 2 466788888875221 1112334456665554321 1
Q ss_pred --HHhHHHHHHHHHh------hcCCcchHHHHHHHHHHhh
Q 040316 232 --LAKRVVEPICEFM------RRTEAKSLLFECIRTVLSS 263 (957)
Q Consensus 232 --L~~kLl~~L~~lL------~~t~a~SVLyE~I~~Ii~~ 263 (957)
.....++.+.+++ .++.+.-+.|+++-|+...
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 1234566777777 3445677899999887653
No 124
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.99 E-value=10 Score=38.09 Aligned_cols=86 Identities=15% Similarity=0.035 Sum_probs=58.3
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh------hhHhhccccc-
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE------NKDFVIKSLS- 320 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~Il~cL~- 320 (957)
.+-+..++.+-.|=. - +...+.|+..|.+-|.+.+|++.+.||..|-.+++....-|.. +...++.+++
T Consensus 17 ~dw~~ileicD~In~-~---~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 17 EDWEAIQAFCEQINK-E---PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSP 92 (139)
T ss_pred CCHHHHHHHHHHHHc-C---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcc
Confidence 556777777665522 1 2334568888888888999999999999999999865433322 3334444443
Q ss_pred -----CCCHHHHHHHHHHHhhh
Q 040316 321 -----DGDYNIKLESLRLLMSM 337 (957)
Q Consensus 321 -----D~D~sIR~~ALeLL~~L 337 (957)
.++..||.+.|+++..-
T Consensus 93 k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 93 KYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred ccCCCCCCHHHHHHHHHHHHHH
Confidence 25678888888887654
No 125
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.79 E-value=1.1e+02 Score=34.44 Aligned_cols=169 Identities=17% Similarity=0.222 Sum_probs=82.2
Q ss_pred CCChhHHHHHHHHHHHhhhcCCCCc---cC--------chHHHHHHHhhcCChHHHHHHHHHHHhhccCChHH----HhH
Q 040316 171 SSEPVILSAVVGVFCELCLKDPRSY---LP--------LAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRL----AKR 235 (957)
Q Consensus 171 D~D~sVv~AAv~vL~EI~~~np~~~---l~--------Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L----~~k 235 (957)
..+..++..++.++.+++..+|... .. ....|++++. ..+.+.+.+..++|+.+....+.. ...
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 4555666666666666666665321 11 2344566444 469999999999999887654322 124
Q ss_pred HHHHHHHHhhcC---CcchHHHHHHHHHHhhcCCcHHHH-----HHHHHHHHHhh-------cCCCchHHHHHHHHHHHH
Q 040316 236 VVEPICEFMRRT---EAKSLLFECIRTVLSSLSEYESAV-----KLAVVKVREFL-------VDDDPNLKYLGLQALSII 300 (957)
Q Consensus 236 Ll~~L~~lL~~t---~a~SVLyE~I~~Ii~~l~~~~~li-----~l~v~~L~~fL-------~ssDpNlrYvaL~~L~~I 300 (957)
+++.+.+.+.+. ....+.+-|+.++...+.. ++.. ...+..|...| ......+.|-++.++-.+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 556655555432 1223445555555443322 2222 23445555555 234677899999888776
Q ss_pred hhhChHHHhh----h-hHhhccccc-CCCHHHHHHHHHHHhhhcCccc
Q 040316 301 APKHLWAVLE----N-KDFVIKSLS-DGDYNIKLESLRLLMSMVSESN 342 (957)
Q Consensus 301 v~~~p~~v~~----h-~~~Il~cL~-D~D~sIR~~ALeLL~~Lvne~N 342 (957)
.-. +..+.. + +..+...+. .+-.-|-|-++-++..+++...
T Consensus 226 SF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 226 SFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp TTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred hcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 542 222211 1 111111111 1223455566666776666544
No 126
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=74.55 E-value=13 Score=35.57 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=55.3
Q ss_pred cchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhh---Hhhccc-------
Q 040316 249 AKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENK---DFVIKS------- 318 (957)
Q Consensus 249 a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~---~~Il~c------- 318 (957)
+...+.+.+.++-. .+...+.++..|.+=|.+++++..|-+|..|-.+++....-|..+. .....+
T Consensus 17 ~~~~i~~i~d~~~~----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~ 92 (115)
T cd00197 17 DWPLIMEICDLINE----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSK 92 (115)
T ss_pred CHHHHHHHHHHHHC----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccc
Confidence 34555555554422 1233455777777777888999999999999999987654333322 111111
Q ss_pred --ccCCCHHHHHHHHHHHhhhc
Q 040316 319 --LSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 319 --L~D~D~sIR~~ALeLL~~Lv 338 (957)
-.+.+..||.++++++...+
T Consensus 93 ~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 93 LLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred cccCCCChHHHHHHHHHHHHHh
Confidence 13668899999999987654
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=73.35 E-value=6.2 Score=32.40 Aligned_cols=50 Identities=18% Similarity=0.099 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHhhhChHHHhhhhHhh----cccccCCCHHHHHHHHHHHhh
Q 040316 287 PNLKYLGLQALSIIAPKHLWAVLENKDFV----IKSLSDGDYNIKLESLRLLMS 336 (957)
Q Consensus 287 pNlrYvaL~~L~~Iv~~~p~~v~~h~~~I----l~cL~D~D~sIR~~ALeLL~~ 336 (957)
|.+|.-++.+|..++...+..+++|...+ +.+|+|++..+|..|..-|-.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 35778888888888877777777766554 456778888999988876643
No 128
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=73.33 E-value=2.9e+02 Score=35.85 Aligned_cols=189 Identities=14% Similarity=0.254 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHhcCC-CHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHH
Q 040316 105 PVILLITNQLRKDLNSS-NQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGV 183 (957)
Q Consensus 105 dlllLatNtLkKDL~s~-Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~v 183 (957)
+.+.-.|++++..+.+. .|...+-|+-+++....... +.+.+....- ..-+..+..|.-+.+-.+|+.+
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~---~~~~~~~~fl-------~~~v~~l~~~~~~~~ki~a~~~ 514 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV---INPQLLQHFL-------NATVNALTMDVPPPVKISAVRA 514 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc---cchhHHHHHH-------HHHHHhhccCCCCchhHHHHHH
Confidence 45555666777776653 35555556656553322111 1111111111 1112334568889999999999
Q ss_pred HHHhhhcCCCCccCchHHHHHHHhh---cCChHHHHHHHHHHHhhccCChHHH----hHHHHHHHHHhhcCCc-c---hH
Q 040316 184 FCELCLKDPRSYLPLAPEFYKILVD---SKNNWLLIKVLKIFAKLATLEPRLA----KRVVEPICEFMRRTEA-K---SL 252 (957)
Q Consensus 184 L~EI~~~np~~~l~Lap~L~~iL~~---~~npWlqIkILkLL~~l~p~ep~L~----~kLl~~L~~lL~~t~a-~---SV 252 (957)
+|..| .++...++-|.+.+.|.. ..+.=...-++..|..-+..+|+.. .++.+.+.+++.+.++ + +.
T Consensus 515 ~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~ 592 (1005)
T KOG2274|consen 515 FCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASL 592 (1005)
T ss_pred HHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHH
Confidence 99999 455566777888877764 2333345556666766666666543 3455555555544332 2 23
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCC----chHHHHHHHHHHHHhhhCh
Q 040316 253 LFECIRTVLSSLSEYESAVKLAVVKVREFLVDDD----PNLKYLGLQALSIIAPKHL 305 (957)
Q Consensus 253 LyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssD----pNlrYvaL~~L~~Iv~~~p 305 (957)
.-+|+.-+++.......+...++-.|...+..+. +.+..+|+..|..++...|
T Consensus 593 ~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 593 AQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 3344444444322223344556666666664444 7788888888888887654
No 129
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=71.93 E-value=3e+02 Score=35.40 Aligned_cols=276 Identities=16% Similarity=0.097 Sum_probs=140.8
Q ss_pred hcCCCchHHHHHHHHHHHHhcCCCHHHH---HHHHHhhccCCchhhHhh-hHHHHHHhhhhh------hH----------
Q 040316 99 SFNDDTPVILLITNQLRKDLNSSNQFEV---SLALECLSRIGNVDLARD-LTPEVFTLLSSN------AV---------- 158 (957)
Q Consensus 99 ~~~~~~dlllLatNtLkKDL~s~Np~vr---~LALr~Ls~I~tpeLa~~-L~~~V~klL~~~------Av---------- 158 (957)
+++.+.|+--..+.++.++..+++..++ +....-|+...+++.... +.+.+...++++ |+
T Consensus 306 l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 306 LLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred hcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 4444336777788888888888887544 444455555566655543 356666666662 11
Q ss_pred -H----------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC--ccCchHHHHHHHhh-----------------
Q 040316 159 -R----------VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRS--YLPLAPEFYKILVD----------------- 208 (957)
Q Consensus 159 -R----------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~--~l~Lap~L~~iL~~----------------- 208 (957)
+ .++|.+..+..|.+..|-.+...++..+.+.-|+. ...+.|.+...+.+
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 0 12466777888999999999888888887655431 12233333333321
Q ss_pred -----cCChHHHHHHHHHHHhhccC-ChHHHhHHHHHHHHHhhcCCcch----------------HHHHHHHHHHhhcC-
Q 040316 209 -----SKNNWLLIKVLKIFAKLATL-EPRLAKRVVEPICEFMRRTEAKS----------------LLFECIRTVLSSLS- 265 (957)
Q Consensus 209 -----~~npWlqIkILkLL~~l~p~-ep~L~~kLl~~L~~lL~~t~a~S----------------VLyE~I~~Ii~~l~- 265 (957)
..-.|.+=..|-.+..+.+. .-+....+++.+-.+... .... .+|+.-+.+...++
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q-~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ-LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh-hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 01122222233333333321 111122222222211111 0001 11111111111000
Q ss_pred -----CcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC--hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhh-
Q 040316 266 -----EYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKH--LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSM- 337 (957)
Q Consensus 266 -----~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~--p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~L- 337 (957)
...-.....+.++..+..++.-=.|...+.++..|+... +-..+.....|.....|+++.||..++..|..+
T Consensus 545 l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 545 LVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 000111111222222222222446778888888887755 344455567788888999999999888887765
Q ss_pred --cCcccHHHHHHHHHHHhhhc---ChHHHHHHHHHHHHHHhh
Q 040316 338 --VSESNVAEISRVLINYALKS---DPEFCNQILGSILSTCCR 375 (957)
Q Consensus 338 --vne~Nv~~IV~ELl~yl~~s---D~~~r~elI~aI~~ic~~ 375 (957)
...+-....|..++..+... |..|+.......+..|..
T Consensus 625 ~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 625 KLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRL 667 (759)
T ss_pred hhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHH
Confidence 35555666666666666553 344555555554455554
No 130
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=71.84 E-value=3.5 Score=32.89 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=31.2
Q ss_pred HHHHHhhhChHHHh--hhhHhhcccccCCCHHHHHHHHHHH
Q 040316 296 ALSIIAPKHLWAVL--ENKDFVIKSLSDGDYNIKLESLRLL 334 (957)
Q Consensus 296 ~L~~Iv~~~p~~v~--~h~~~Il~cL~D~D~sIR~~ALeLL 334 (957)
++..++..+|.++. .-+..|..++.|+++++|.-|+++|
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 46677777887765 4567788889999999999999985
No 131
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.83 E-value=1e+02 Score=38.00 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHHHhhc----cCChHHHhHHHH-HHHHHhhcC--CcchHHHHHHHHHHhhcC---C-cHHHHHHHHHHHH
Q 040316 211 NNWLLIKVLKIFAKLA----TLEPRLAKRVVE-PICEFMRRT--EAKSLLFECIRTVLSSLS---E-YESAVKLAVVKVR 279 (957)
Q Consensus 211 npWlqIkILkLL~~l~----p~ep~L~~kLl~-~L~~lL~~t--~a~SVLyE~I~~Ii~~l~---~-~~~li~l~v~~L~ 279 (957)
+|-.--+|++++.++. |.+|+- ..+.. .+.-+++-+ ..+-|-|-|...+.-..+ + .+.+......+|.
T Consensus 60 ~~si~dRil~fl~~f~~Y~~~~dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~ 138 (885)
T COG5218 60 NPSIPDRILSFLKRFFEYDMPDDPEG-EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLS 138 (885)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCChhh-hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444444555544432 334543 33333 334444432 457888888775543322 1 1345666677776
Q ss_pred HhhcCCCchHHHHHHHHHHHHhh--hChHHHhhhhHhhcc-cccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhh
Q 040316 280 EFLVDDDPNLKYLGLQALSIIAP--KHLWAVLENKDFVIK-SLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALK 356 (957)
Q Consensus 280 ~fL~ssDpNlrYvaL~~L~~Iv~--~~p~~v~~h~~~Il~-cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~ 356 (957)
.-+-+..+-+|.-|+.+|.+.-. -+++-.... .+.. .=+||...+|+.||-- -.++.+...-|++. .++
T Consensus 139 ~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n--~l~~~vqnDPS~EVRr~alln--i~vdnsT~p~IlER----arD 210 (885)
T COG5218 139 ERLFDREKAVRREAVKVLCYYQEMELNEENRIVN--LLKDIVQNDPSDEVRRLALLN--ISVDNSTYPCILER----ARD 210 (885)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhccCChHHHHHH--HHHHHHhcCcHHHHHHHHHHH--eeeCCCcchhHHHH----hhh
Confidence 66668889999988888887743 344433332 2222 2368877888877543 45677777777655 445
Q ss_pred cChHHHH----HHHHHHHHHHh
Q 040316 357 SDPEFCN----QILGSILSTCC 374 (957)
Q Consensus 357 sD~~~r~----elI~aI~~ic~ 374 (957)
.+..-|+ .++.+||..|.
T Consensus 211 v~~anRr~vY~r~Lp~iGd~~~ 232 (885)
T COG5218 211 VSGANRRMVYERCLPRIGDLKS 232 (885)
T ss_pred hhHHHHHHHHHHHhhhhcchhh
Confidence 5555444 45667777664
No 132
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=70.01 E-value=1e+02 Score=35.23 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhh--cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcC-cccHHH
Q 040316 269 SAVKLAVVKVREFL--VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVS-ESNVAE 345 (957)
Q Consensus 269 ~li~l~v~~L~~fL--~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn-e~Nv~~ 345 (957)
..+..+...|..+| .+++...+-.|...... ++++|...|+.+|+.....+..-+|.||..||. .. ..
T Consensus 20 ~~~~~~~~~L~~~l~~ls~~~~~~~~g~~l~~~-------iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~--g~ 90 (330)
T PF11707_consen 20 SLLSLVSSVLALLLKKLSSDLSFQSYGLELIRS-------ILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDG--GA 90 (330)
T ss_pred hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCC--HH
Confidence 34555556665555 34444455455555444 456778999999999888999999999999987 44 45
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhccc--c-----cchHHHHHHHHHhhccCCcchHHHHH
Q 040316 346 ISRVLINYALKSDPEFCNQILGSILSTCCRNLYEV--I-----VDFDWYASLLGEMVRIPHCQKGEEIE 407 (957)
Q Consensus 346 IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~--~-----~dfeWyvdvLl~Ll~~~~~~v~~eI~ 407 (957)
..+++..++. |.-..+.+++..-.+..... . .-...||+.++.++...+..+..+++
T Consensus 91 ~a~~v~~~fd-----~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL 154 (330)
T PF11707_consen 91 LAREVLRSFD-----FSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLL 154 (330)
T ss_pred HHHHHHHhcC-----CchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5666666653 33333333322110000000 0 11236888888888876554444443
No 133
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.85 E-value=16 Score=36.00 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=29.6
Q ss_pred HHhhcCCcHHHHHH--HHHHHHHhhcCCCchHHHHHHHHHHHHhhh
Q 040316 260 VLSSLSEYESAVKL--AVVKVREFLVDDDPNLKYLGLQALSIIAPK 303 (957)
Q Consensus 260 Ii~~l~~~~~li~l--~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~ 303 (957)
++...|....+++. +-.++..++.+.|+++||=||.++.+++..
T Consensus 71 ~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 71 FVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 33334554444422 445567788999999999999999998754
No 134
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.27 E-value=3.1e+02 Score=34.52 Aligned_cols=181 Identities=14% Similarity=0.078 Sum_probs=109.1
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH----------HHhhhhHhhcc
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW----------AVLENKDFVIK 317 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~----------~v~~h~~~Il~ 317 (957)
-...|=-.++..++.. .+.-.+-+.|.+...+.+.+.+..+|-.|++.+....+.+|- +...-...|=.
T Consensus 210 ~D~~Vrt~A~eglL~L-~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~ 288 (823)
T KOG2259|consen 210 QDFRVRTHAVEGLLAL-SEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCR 288 (823)
T ss_pred CCcchHHHHHHHHHhh-cccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHH
Confidence 3455666666666663 434445567888888888888999999999999999988851 11112223333
Q ss_pred cccCCCHHHHHHHHHHHhhhcCcc--cHHHHH-HHHHHHhhh-------------c------------------------
Q 040316 318 SLSDGDYNIKLESLRLLMSMVSES--NVAEIS-RVLINYALK-------------S------------------------ 357 (957)
Q Consensus 318 cL~D~D~sIR~~ALeLL~~Lvne~--Nv~~IV-~ELl~yl~~-------------s------------------------ 357 (957)
.+.|-...||-.|-.+|-.|.+-+ -+...+ ++++.-++. +
T Consensus 289 ~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~s 368 (823)
T KOG2259|consen 289 AVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEES 368 (823)
T ss_pred HHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccc
Confidence 477888899999999887774322 222222 344441110 0
Q ss_pred --------------C---hHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcc
Q 040316 358 --------------D---PEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDV 420 (957)
Q Consensus 358 --------------D---~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~i 420 (957)
+ .+.|+.+|.+++.++.. .|.|+. -+++.|+++++-.-..+.-..+..+.-|..+ -.+
T Consensus 369 iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~---~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i 443 (823)
T KOG2259|consen 369 IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAV---RALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAI 443 (823)
T ss_pred cccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHH---HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-hee
Confidence 0 25677888888877653 355544 4899999988765444444444444444433 334
Q ss_pred hHHHHHHHHHHhcC
Q 040316 421 RPALVHVCRNLLID 434 (957)
Q Consensus 421 r~~av~~l~~lL~d 434 (957)
|+..+..++..|.|
T Consensus 444 ~eeql~~il~~L~D 457 (823)
T KOG2259|consen 444 REEQLRQILESLED 457 (823)
T ss_pred cHHHHHHHHHHHHh
Confidence 44444444444433
No 135
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.32 E-value=21 Score=35.96 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh------hhHhhccccc-
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE------NKDFVIKSLS- 320 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~Il~cL~- 320 (957)
.+-++.+|.+..|=. -+ ...+.|+..|++=|.+++||+++.||..|-.+++....-|.. +.+.+..++.
T Consensus 20 ~dw~~ileicD~In~-~~---~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~ 95 (142)
T cd03569 20 PDLASILEICDMIRS-KD---VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT 95 (142)
T ss_pred cCHHHHHHHHHHHhC-CC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc
Confidence 445666666665422 11 234568888888888899999999999999999875332221 2233333333
Q ss_pred CCCHHHHHHHHHHHhhh
Q 040316 321 DGDYNIKLESLRLLMSM 337 (957)
Q Consensus 321 D~D~sIR~~ALeLL~~L 337 (957)
.++..||.+.|+++..-
T Consensus 96 ~~~~~Vk~kil~li~~W 112 (142)
T cd03569 96 TKNEEVRQKILELIQAW 112 (142)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 45567777777776544
No 136
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=66.93 E-value=5.4e+02 Score=36.42 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHHhhcc----CCh----HHHhHHHHHHHHHhhcCCcc---hHHHHHHHHHHhhcCCcHHHH---HHHHH
Q 040316 211 NNWLLIKVLKIFAKLAT----LEP----RLAKRVVEPICEFMRRTEAK---SLLFECIRTVLSSLSEYESAV---KLAVV 276 (957)
Q Consensus 211 npWlqIkILkLL~~l~p----~ep----~L~~kLl~~L~~lL~~t~a~---SVLyE~I~~Ii~~l~~~~~li---~l~v~ 276 (957)
+.-..+..++.|+.++- .+. +..++++.++..+|.++.+. -.+.+|+.-++.... ..+. +.+..
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nIkSGWktIF~ 1227 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNVKSGWKSMFM 1227 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhhhcCcHHHHH
Confidence 44555666666655443 222 45678899999989876543 345666664443211 1111 22333
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHhhhChH--------HHhhhhHhhccccc-CCCHHHHHHHHHHHhhh
Q 040316 277 KVREFLVDDDPNLKYLGLQALSIIAPKHLW--------AVLENKDFVIKSLS-DGDYNIKLESLRLLMSM 337 (957)
Q Consensus 277 ~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~--------~v~~h~~~Il~cL~-D~D~sIR~~ALeLL~~L 337 (957)
.|..-..+..+.+--+|..++..|+..+-. .|...+..+...-+ ..|..|-..|+++|-.+
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 333333456677777888888888765432 33333333222111 22233555777777633
No 137
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=66.75 E-value=2.5e+02 Score=32.50 Aligned_cols=217 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCC
Q 040316 114 LRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPR 193 (957)
Q Consensus 114 LkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~ 193 (957)
+|.-|..++..+..||+..+++| ..+.=..-...|....+. .+++.+..++...|-.|.-||+-.+-.|+.--..
T Consensus 87 LQrGLiaddasVKiLackqigci-lEdcDtnaVseillvvNa----eilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 87 LQRGLIADDASVKILACKQIGCI-LEDCDTNAVSEILLVVNA----EILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred HHhcccCCcchhhhhhHhhhhHH-HhcCchhhHHHHHHHhhh----hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Q ss_pred ---CccC--chHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH-----HHHHHHHHhhcCCcchHHHHHHHHHHhh
Q 040316 194 ---SYLP--LAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR-----VVEPICEFMRRTEAKSLLFECIRTVLSS 263 (957)
Q Consensus 194 ---~~l~--Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k-----Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~ 263 (957)
.|.+ +-|...+.|---+|....++++.++-.+....|..... +++.+..-|.-+...-|...||..+...
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Q ss_pred --------cCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHh
Q 040316 264 --------LSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLM 335 (957)
Q Consensus 264 --------l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~ 335 (957)
+-....+++++++.+.+- |.|++=+.++|-...
T Consensus 242 aeteHgreflaQeglIdlicnIIsGa---------------------------------------dsdPfekfralmgfg 282 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGA---------------------------------------DSDPFEKFRALMGFG 282 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCC---------------------------------------CCCcHHHHHHHHHHH
Q ss_pred hhcCcccHHH-----HHHHHHHHhhhc-------ChHHHHHHHHHHHHHHh
Q 040316 336 SMVSESNVAE-----ISRVLINYALKS-------DPEFCNQILGSILSTCC 374 (957)
Q Consensus 336 ~Lvne~Nv~~-----IV~ELl~yl~~s-------D~~~r~elI~aI~~ic~ 374 (957)
++-.+.|+.. |++.+.-++..+ |++....+|.+++.+.+
T Consensus 283 kffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 283 KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
No 138
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.21 E-value=3e+02 Score=33.33 Aligned_cols=147 Identities=13% Similarity=0.070 Sum_probs=76.9
Q ss_pred HHHhhhhHhhccccc-CCCHHHHHHHHHHHhhhc-CcccHHHHHHH--HHHHhhh------cChHHHHHHHHHHHHHHhh
Q 040316 306 WAVLENKDFVIKSLS-DGDYNIKLESLRLLMSMV-SESNVAEISRV--LINYALK------SDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 306 ~~v~~h~~~Il~cL~-D~D~sIR~~ALeLL~~Lv-ne~Nv~~IV~E--Ll~yl~~------sD~~~r~elI~aI~~ic~~ 375 (957)
..|-.++..+...++ |.+.+.-...|-+|..+. +.--|..|+++ |.-|+.. ...+++-++|..+|..+..
T Consensus 500 n~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d 579 (791)
T KOG1222|consen 500 NMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD 579 (791)
T ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence 345555555444332 555666666666666553 33446666653 3444443 2356777888877755432
Q ss_pred hhcc--cccchHHHHHHHHHhhccC--CcchHHHHHHHHHHHHHhcCcchHHHHH------HHHHHhcCCcccCCCchHH
Q 040316 376 NLYE--VIVDFDWYASLLGEMVRIP--HCQKGEEIEHQIIDIAMRVKDVRPALVH------VCRNLLIDPALLGNPFLHR 445 (957)
Q Consensus 376 ~~y~--~~~dfeWyvdvLl~Ll~~~--~~~v~~eI~~~L~dIi~rvp~ir~~av~------~l~~lL~d~~~l~~~~~~~ 445 (957)
..-. +++ .-.++.|++|+... .+.+.-.|+.++.+++.. ...|.+.++ .++.++.|. |...-.
T Consensus 580 ~~cA~Lla~--a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDk----N~eiRk 652 (791)
T KOG1222|consen 580 LDCARLLAP--AKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDK----NAEIRK 652 (791)
T ss_pred hHHHHHhCc--cccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcc----cHHHHH
Confidence 1100 111 23778888888643 344555667777777654 444555443 233344331 222233
Q ss_pred HHHHHhhhhccCCC
Q 040316 446 ILSAAAWVSGEYVE 459 (957)
Q Consensus 446 ~l~a~aWIlGEY~~ 459 (957)
+.--+.-|+|||..
T Consensus 653 VCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 653 VCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHHHHHHHhhH
Confidence 44455667777743
No 139
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=65.65 E-value=53 Score=40.63 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCcc----hHHHHHHHHHHhhcCCc-HHH-HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHH
Q 040316 235 RVVEPICEFMRRTEAK----SLLFECIRTVLSSLSEY-ESA-VKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAV 308 (957)
Q Consensus 235 kLl~~L~~lL~~t~a~----SVLyE~I~~Ii~~l~~~-~~l-i~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v 308 (957)
+.++++..++.. ++. +++-.-.|.++.+ ++. ... ....+++|..++.+.|+|+|-.++..|..++-..-+.+
T Consensus 419 dv~~plvqll~d-p~~~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 419 DVAQPLVQLLMD-PEIMIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred hhHHHHHHHhhC-cchhHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 345566666643 332 3333334455443 332 222 34588899999999999999999999999886543322
Q ss_pred -----hhhh-HhhcccccCCCHHHHHHHHHHHhhhcCc--ccHHHHHH
Q 040316 309 -----LENK-DFVIKSLSDGDYNIKLESLRLLMSMVSE--SNVAEISR 348 (957)
Q Consensus 309 -----~~h~-~~Il~cL~D~D~sIR~~ALeLL~~Lvne--~Nv~~IV~ 348 (957)
.... ..|.+..+|||.-|.-.++.+|-.++.. +.+.-+++
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 2222 3344456899999999999999999876 44444443
No 140
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.23 E-value=48 Score=41.25 Aligned_cols=134 Identities=12% Similarity=0.043 Sum_probs=97.4
Q ss_pred CCchHHHHHHHHHHHHhhhChHHHhhhhHhhccccc-CCCHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHhhhcChHH
Q 040316 285 DDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLS-DGDYNIKLESLRLLMSM--VSESNVAEISRVLINYALKSDPEF 361 (957)
Q Consensus 285 sDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~-D~D~sIR~~ALeLL~~L--vne~Nv~~IV~ELl~yl~~sD~~~ 361 (957)
+|+.++-.|-.+|.+++....+++.+|...++..+. .|++.||..|.==|-.| |=...+.++..-|..-+.+.|.+.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V 987 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADV 987 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHH
Confidence 799999999999999999999999999999999887 89999998765433222 233446667777777777788889
Q ss_pred HHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchH
Q 040316 362 CNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRP 422 (957)
Q Consensus 362 r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~ 422 (957)
++.+.-.|.-+...+. -...-++..+..++......+.+-.-..+.+++.+...+..
T Consensus 988 ~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~yn 1044 (1128)
T COG5098 988 RRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMYN 1044 (1128)
T ss_pred HHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchhh
Confidence 9988766644433221 11223677777777777767777777777777776665544
No 141
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=64.67 E-value=2.1e+02 Score=31.00 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcc-------cccCCCH------HHHHHHHHHHh
Q 040316 269 SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIK-------SLSDGDY------NIKLESLRLLM 335 (957)
Q Consensus 269 ~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~-------cL~D~D~------sIR~~ALeLL~ 335 (957)
.....+++.|..+...+....+|++++.+..+...++..+..-+..+.. ...+.+. +++.-.-++..
T Consensus 34 ~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~ 113 (234)
T PF12530_consen 34 VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICC 113 (234)
T ss_pred cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHH
Confidence 3445677777777776677778999999999988887666333322222 1122211 11212222222
Q ss_pred hhcCcccHHHHHHHHHHHh-hhcChHHHHHHHHHHHHHHhh
Q 040316 336 SMVSESNVAEISRVLINYA-LKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 336 ~Lvne~Nv~~IV~ELl~yl-~~sD~~~r~elI~aI~~ic~~ 375 (957)
..++...+++..|...+ ...++..+.-.+..|..+|..
T Consensus 114 --~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 114 --SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred --hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 24568888999999999 777888888888888888864
No 142
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=64.22 E-value=2.5e+02 Score=33.64 Aligned_cols=164 Identities=15% Similarity=0.218 Sum_probs=92.0
Q ss_pred hHHHHHHHhh---cCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHh---hcCCc----chHHHHHHHHHHhhcCC-c
Q 040316 199 APEFYKILVD---SKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFM---RRTEA----KSLLFECIRTVLSSLSE-Y 267 (957)
Q Consensus 199 ap~L~~iL~~---~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL---~~t~a----~SVLyE~I~~Ii~~l~~-~ 267 (957)
...||.++.. .-|++..--|+|++..+...-......+++.+..++ .+|++ +--+||++-+++..... .
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~ 107 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD 107 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence 3445555543 358888888888887765432222333444444443 34433 25689999999886542 3
Q ss_pred HHH----HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh-HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCccc
Q 040316 268 ESA----VKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL-WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESN 342 (957)
Q Consensus 268 ~~l----i~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p-~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~N 342 (957)
++. -..+...+...|..+=.+.-=-++..|..++..+| .-+.+.+..++.+|-.|..- -...|
T Consensus 108 ~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW------------e~~gn 175 (435)
T PF03378_consen 108 PEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW------------ERRGN 175 (435)
T ss_dssp HH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG------------GSTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh------------ccCCC
Confidence 442 24455555666655445555456888888888888 55555555566665555211 35679
Q ss_pred HHHHHHHHHHHhhhcChHHH-HHHHHHHHHHHh
Q 040316 343 VAEISRVLINYALKSDPEFC-NQILGSILSTCC 374 (957)
Q Consensus 343 v~~IV~ELl~yl~~sD~~~r-~elI~aI~~ic~ 374 (957)
+..+++=|..|+.+....+. ..-+..|+.++.
T Consensus 176 iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQ 208 (435)
T PF03378_consen 176 IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQ 208 (435)
T ss_dssp HHHHHHHHHHHHHHHGGG----S-CHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHH
Confidence 99999999999988766553 223334444443
No 143
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=63.64 E-value=1.9e+02 Score=33.94 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=87.1
Q ss_pred HHHHHhhhChH-----HHhhhhHhhcc-cccCCCHHHHHHHHHHH-hhhcCcccHHHHHHH-HHHHhhhc---C----h-
Q 040316 296 ALSIIAPKHLW-----AVLENKDFVIK-SLSDGDYNIKLESLRLL-MSMVSESNVAEISRV-LINYALKS---D----P- 359 (957)
Q Consensus 296 ~L~~Iv~~~p~-----~v~~h~~~Il~-cL~D~D~sIR~~ALeLL-~~Lvne~Nv~~IV~E-Ll~yl~~s---D----~- 359 (957)
.|..+.+.||. .+......|.. +|+|. ..||.-++.++ +.+.++++++.+++- +-.|+..+ + .
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~E 84 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVE 84 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence 44455555652 12333444443 56666 99999999999 777888877777652 22232221 1 1
Q ss_pred -HHHHHHHHHHHHH--HhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHhcC
Q 040316 360 -EFCNQILGSILST--CCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDV--RPALVHVCRNLLID 434 (957)
Q Consensus 360 -~~r~elI~aI~~i--c~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~i--r~~av~~l~~lL~d 434 (957)
+-.-++|++++.+ +.+ ..+ .-.+..++.+.....+....-+...+..++..+|++ +-..++.+...+.|
T Consensus 85 R~QALkliR~~l~~~~~~~----~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKGPK----EIP--RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHhcCCcc----cCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh
Confidence 2333455666554 211 111 235677777887777778888889999999998875 33345556666655
Q ss_pred CcccCCCchHHHHHHHhhhhc
Q 040316 435 PALLGNPFLHRILSAAAWVSG 455 (957)
Q Consensus 435 ~~~l~~~~~~~~l~a~aWIlG 455 (957)
.. .+ ..+.++.++.+++-
T Consensus 159 ~~-~~--~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 159 GS-FS--ISESLLDTLLYLLD 176 (371)
T ss_pred cc-Hh--HHHHHHHHHHHHhC
Confidence 21 11 23344555555554
No 144
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=63.55 E-value=2.5e+02 Score=31.31 Aligned_cols=75 Identities=23% Similarity=0.306 Sum_probs=46.9
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHhhhCh-HHHhh-----hhHhhcccccCCCHHHHHHHHHHHhhhcC-----cccHH
Q 040316 276 VKVREFLVDDDPNLKYLGLQALSIIAPKHL-WAVLE-----NKDFVIKSLSDGDYNIKLESLRLLMSMVS-----ESNVA 344 (957)
Q Consensus 276 ~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p-~~v~~-----h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn-----e~Nv~ 344 (957)
+.|+..|++.|+.+|--|+..|..++..-| ..+.. -...+..+|+|. ..+.-. |.-+..|++ .+.+.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhhHH
Confidence 457888999999999999999998887655 33332 334455577776 455332 444444443 33455
Q ss_pred HHHHHHHH
Q 040316 345 EISRVLIN 352 (957)
Q Consensus 345 ~IV~ELl~ 352 (957)
.|++.+.+
T Consensus 80 ~i~~~l~~ 87 (262)
T PF14500_consen 80 KILRSLFQ 87 (262)
T ss_pred HHHHHHHH
Confidence 55555554
No 145
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=63.25 E-value=22 Score=35.47 Aligned_cols=84 Identities=24% Similarity=0.220 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh------hhHhhcccccC-
Q 040316 249 AKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE------NKDFVIKSLSD- 321 (957)
Q Consensus 249 a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~Il~cL~D- 321 (957)
..+..++.+..|=. .+...+.++..|++=|.+.+|++++.+|..+-.+++....-|.. +.+.+..++.+
T Consensus 22 Dw~~~l~icD~i~~----~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 22 DWSLILEICDLINS----SPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp -HHHHHHHHHHHHT----STTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHc----CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence 34555555544322 13345668888888888899999999999999999877543332 22333333332
Q ss_pred -CCHH--HHHHHHHHHhh
Q 040316 322 -GDYN--IKLESLRLLMS 336 (957)
Q Consensus 322 -~D~s--IR~~ALeLL~~ 336 (957)
.+.. ||.+++++|..
T Consensus 98 ~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 98 KTDPETPVKEKILELLQE 115 (140)
T ss_dssp TTHHHSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHH
Confidence 1122 66666666543
No 146
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=63.23 E-value=3.1e+02 Score=32.33 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHhhhcChHHHHHHH-HHHHHHHhhhhcccccchHHHHHHHHHhh-ccCCcchHHHHHHHH----HHHHH
Q 040316 342 NVAEISRVLINYALKSDPEFCNQIL-GSILSTCCRNLYEVIVDFDWYASLLGEMV-RIPHCQKGEEIEHQI----IDIAM 415 (957)
Q Consensus 342 Nv~~IV~ELl~yl~~sD~~~r~elI-~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll-~~~~~~v~~eI~~~L----~dIi~ 415 (957)
+...+++.++..+...+..+.+... +.++.++ |+|......+-+++.+..-+ ...........+..+ +-++.
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv--NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~ 263 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLV--NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVM 263 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHH
Confidence 5667888888888776655554444 3333333 34422222333444443333 111111222222222 22233
Q ss_pred hcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCC-------H-------HHHHHHHhcccccCCCH
Q 040316 416 RVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRN-------P-------FELMEALLQPRTNLLLP 481 (957)
Q Consensus 416 rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~-------p-------~~iL~~LL~~~~~~es~ 481 (957)
|....-...+..+..+|.++. ....+-++.--+++++.+.... + ..++..|++ .|...+.
T Consensus 264 R~~~~~~~~~~~L~~lL~~~~-----~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~-~~~~~~~ 337 (415)
T PF12460_consen 264 RGHPLATELLDKLLELLSSPE-----LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLE-GFKEADD 337 (415)
T ss_pred cCCchHHHHHHHHHHHhCChh-----hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHH-HHhhcCh
Confidence 333233344566666665421 1344556666677775443321 1 123344444 4555666
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 040316 482 SIRAVYVQSVFKVLIFCA 499 (957)
Q Consensus 482 ~Vq~~iLtAl~Klf~~~~ 499 (957)
++|..||+|++-+..+++
T Consensus 338 ~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVP 355 (415)
T ss_pred hhHHHHHHHHHHHHhhCC
Confidence 688888888887776654
No 147
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=63.20 E-value=1.3e+02 Score=38.67 Aligned_cols=196 Identities=17% Similarity=0.160 Sum_probs=116.4
Q ss_pred hHHHHHHhhcCCCccchhhhHHHHHhhcCCCc-----hHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCch--hhHhhh
Q 040316 73 AAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDT-----PVILLITNQLRKDLNSSNQFEVSLALECLSRIGNV--DLARDL 145 (957)
Q Consensus 73 ~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~-----dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tp--eLa~~L 145 (957)
.-+++-.-|.|++...+.=|--.+...+.+.. ...-|..=.++.++.|.|-.+.++|+.+|..|... ..+.
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~-- 331 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR-- 331 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH--
Confidence 45666667888888888877776665554332 12223333677888899999999999988776541 1111
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhh
Q 040316 146 TPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKL 225 (957)
Q Consensus 146 ~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l 225 (957)
+.....++.|.+++.|.-+.++-+++.++..++...+- ..+... ++..|
T Consensus 332 ----------~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l---------~~~~~~------------I~e~l 380 (815)
T KOG1820|consen 332 ----------KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL---------SKMSEA------------ILEAL 380 (815)
T ss_pred ----------HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH---------HHHHHH------------HHHHh
Confidence 23445577788888888888888888888877763321 111111 11122
Q ss_pred ccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh
Q 040316 226 ATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL 305 (957)
Q Consensus 226 ~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p 305 (957)
.-.+|.....+...+...++......+-. ..+..++..+.....+.+.++|-.++.++..+...+-
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~--------------~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEK--------------ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcch--------------hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 22344443333333333333322122222 2334455556666678899999999999999888775
Q ss_pred -HHHhhhhHhh
Q 040316 306 -WAVLENKDFV 315 (957)
Q Consensus 306 -~~v~~h~~~I 315 (957)
..+..+...+
T Consensus 447 e~~~~k~L~~~ 457 (815)
T KOG1820|consen 447 EEVFKKLLKDL 457 (815)
T ss_pred HHHHHHHHHhh
Confidence 3444444443
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.16 E-value=12 Score=27.44 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=24.0
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhh
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCL 189 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~ 189 (957)
+|.+.++|.|+++.|-.+|+..+-.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999988875
No 149
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=63.09 E-value=2.9e+02 Score=31.96 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCCch-HHHHHHHHHHHHhhhChHH---Hhhh--hHhhcccccCCCHHHHHHHHHHHhhhcC
Q 040316 273 LAVVKVREFLVDDDPN-LKYLGLQALSIIAPKHLWA---VLEN--KDFVIKSLSDGDYNIKLESLRLLMSMVS 339 (957)
Q Consensus 273 l~v~~L~~fL~ssDpN-lrYvaL~~L~~Iv~~~p~~---v~~h--~~~Il~cL~D~D~sIR~~ALeLL~~Lvn 339 (957)
.++..|..+|.++.+| .-.+|+.-+..++...|+. +..+ +..||..++.+|.-||..||..++.+.+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 3677888889888888 6778999999999998853 4443 5779999999999999999998876543
No 150
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=60.29 E-value=49 Score=42.38 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=33.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccc----cCCC---HHHHHHHHHHHhhhcC
Q 040316 283 VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSL----SDGD---YNIKLESLRLLMSMVS 339 (957)
Q Consensus 283 ~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL----~D~D---~sIR~~ALeLL~~Lvn 339 (957)
.-.|+.+|--+|..+..++..++.+...|.++++..+ .|+| ..+|..||..|-.++.
T Consensus 919 s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 919 SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 4456666666666666666666666666666554421 2444 4566666666666554
No 151
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=60.11 E-value=67 Score=38.42 Aligned_cols=81 Identities=10% Similarity=0.100 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh-----HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHH
Q 040316 273 LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL-----WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEIS 347 (957)
Q Consensus 273 l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p-----~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV 347 (957)
+|+.-+...|.+.|-..--.++..+.+++..-+ .++......++..++.+..++|+.|+-.|..|++.=- .
T Consensus 406 ~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG----~ 481 (516)
T KOG2956|consen 406 QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG----M 481 (516)
T ss_pred hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh----H
Confidence 355556666655565666666777777776543 3445555666777788888888888888888753211 1
Q ss_pred HHHHHHhhhc
Q 040316 348 RVLINYALKS 357 (957)
Q Consensus 348 ~ELl~yl~~s 357 (957)
+++..|+..-
T Consensus 482 ~~mePhL~~L 491 (516)
T KOG2956|consen 482 EEMEPHLEQL 491 (516)
T ss_pred HhhhhHhhhc
Confidence 4566666543
No 152
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=59.87 E-value=34 Score=40.85 Aligned_cols=30 Identities=0% Similarity=0.116 Sum_probs=23.7
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhc
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLK 190 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~ 190 (957)
.+..++..+..+|+.|..+++.++--|...
T Consensus 151 ~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 151 VWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 455677888899999999999888777643
No 153
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=59.05 E-value=67 Score=32.82 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=21.8
Q ss_pred hHhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 312 KDFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 312 ~~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
...|..||..+++.+|..+++||..+|
T Consensus 160 v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 160 VNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 466778899999999999999999886
No 154
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=59.04 E-value=2.9e+02 Score=33.98 Aligned_cols=175 Identities=11% Similarity=0.195 Sum_probs=85.1
Q ss_pred HHhhhcCCChhHHHHHH-------HHHHHhhhcCCCCccCchHHHHHHHhh-cCChHHHHHHHHHHHhhccCChHHHhHH
Q 040316 165 LVENLESSEPVILSAVV-------GVFCELCLKDPRSYLPLAPEFYKILVD-SKNNWLLIKVLKIFAKLATLEPRLAKRV 236 (957)
Q Consensus 165 L~elL~D~D~sVv~AAv-------~vL~EI~~~np~~~l~Lap~L~~iL~~-~~npWlqIkILkLL~~l~p~ep~L~~kL 236 (957)
+.++|.+.--.++...+ .++..+....|+...+.+|.|.-+|.. .+...+.+.++-+|- ....++.-.+.
T Consensus 160 ~adLL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI--~Qk~~evL~~c 237 (851)
T KOG3723|consen 160 KADLLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLI--KQKQLEVLQKC 237 (851)
T ss_pred hhhhccCchHHHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHH--HhccHHHHHHH
Confidence 44556554444444433 355566667788777788887766654 123344444433332 12234444556
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhh--cCCCchHHHHHHHHHHHHhhhChHH--Hhhhh
Q 040316 237 VEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFL--VDDDPNLKYLGLQALSIIAPKHLWA--VLENK 312 (957)
Q Consensus 237 l~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL--~ssDpNlrYvaL~~L~~Iv~~~p~~--v~~h~ 312 (957)
++.|...+..+...++.....+-|..+.+-.-....-.++-++... ..++.-.-|.++.....+...+|-- +++|.
T Consensus 238 iP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~~~~~~a~i~T~~g~~d~e~a~~~l~~l~~q~a 317 (851)
T KOG3723|consen 238 IPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGERFPYLTGQMARIYTAVGHVDEERARSCLTYLVSQLA 317 (851)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCccHHHHHHHHHhcccchhhhcchHHHHHHHHH
Confidence 6666655554444444444444333321110001111222222222 3345556666776666666666632 33443
Q ss_pred HhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHH
Q 040316 313 DFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISR 348 (957)
Q Consensus 313 ~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ 348 (957)
. +++.+.- | +-+|=+.+.++..|...+..
T Consensus 318 ~-~~~s~~~----~--l~~eriLA~~~~~Ns~l~~q 346 (851)
T KOG3723|consen 318 N-MEHSFHH----I--LLLERILAITDTFNSILGPQ 346 (851)
T ss_pred H-HHhcccH----H--HHHHHHHHHhCccccccchh
Confidence 3 3333321 1 34566666777777665543
No 155
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=58.11 E-value=4.4e+02 Score=32.45 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhh
Q 040316 286 DPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALK 356 (957)
Q Consensus 286 DpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~ 356 (957)
+..+|..|+.+|.+++..+|..+.+-.-.||.=-.+ |..||..|+.+|+. |+++ ..++..+..++..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e-~~EvRiaA~~~lm~-~~P~--~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTE-DPEVRIAAYLILMR-CNPS--PSVLQRIAQSLWN 603 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS--HHHHHHHHHHHHH-T-----HHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHh-cCCC--HHHHHHHHHHHhh
Confidence 567778888888888778887777666655544444 37799999888776 4454 4556666666643
No 156
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=57.91 E-value=4.9e+02 Score=32.97 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=116.2
Q ss_pred CChhHHHHHHHHHHHhhhcCCC--CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChH--HHhHHHHHHHHHhhcC
Q 040316 172 SEPVILSAVVGVFCELCLKDPR--SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPR--LAKRVVEPICEFMRRT 247 (957)
Q Consensus 172 ~D~sVv~AAv~vL~EI~~~np~--~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~--L~~kLl~~L~~lL~~t 247 (957)
.|+.=.+.-+..|-.+.+.-|. .|.++.|.|...|++ +=++-.++-++..+....+. ...++++.|..+++.+
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n---~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~ 361 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVN---TKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSAS 361 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcc---ccccccccchhhhhhhccchhhhhhhhhHHHHHHhccC
Confidence 4555555555555555555443 234455666655532 22222333333333333332 2557778888888742
Q ss_pred C---cchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh-H----HHhhhhHhhcccc
Q 040316 248 E---AKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL-W----AVLENKDFVIKSL 319 (957)
Q Consensus 248 ~---a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p-~----~v~~h~~~Il~cL 319 (957)
. ....++|=..++...++. +++.+.|+.-|.+-+++.+..++=.+|..+-..+..-. . .+-+-+..+ |+
T Consensus 362 ~~~~~~l~i~e~mdlL~~Kt~~-e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l--~~ 438 (700)
T KOG2137|consen 362 DPKQALLFILENMDLLKEKTPP-EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL--AF 438 (700)
T ss_pred CcccchhhHHhhHHHHHhhCCh-HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc--hh
Confidence 2 235567766677665443 56777788878777889999999999998888776432 2 222223333 67
Q ss_pred cCCCHHHHHHHHHHHhhhcC---cccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 320 SDGDYNIKLESLRLLMSMVS---ESNVAEISRVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 320 ~D~D~sIR~~ALeLL~~Lvn---e~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
...+.++|.-+|..+-+++. .-++.+++.-+++.....|+.+.-.+++....+..
T Consensus 439 ~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 439 KTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 77889999988888777763 33444444444444445577777666655443333
No 157
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=56.93 E-value=3.4e+02 Score=33.36 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=8.0
Q ss_pred CChHHHHHHHHHHHhhc
Q 040316 210 KNNWLLIKVLKIFAKLA 226 (957)
Q Consensus 210 ~npWlqIkILkLL~~l~ 226 (957)
.+.+-.+..||.|+.+.
T Consensus 502 ~~~~~~~~~LkaLgN~g 518 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLG 518 (618)
T ss_dssp T-HHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhhccC
Confidence 34455555555555443
No 158
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=56.61 E-value=1.6e+02 Score=30.77 Aligned_cols=135 Identities=11% Similarity=0.072 Sum_probs=80.8
Q ss_pred HHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhh
Q 040316 78 VEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNA 157 (957)
Q Consensus 78 VelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~A 157 (957)
-++..+..++.|-+|++.+...... -++......-..+..+.+.++++.+++.++.-+....
T Consensus 57 ~~L~~~~~~E~~~la~~il~~~~~~------------------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~ 118 (213)
T PF08713_consen 57 DELWESGYREERYLALLILDKRRKK------------------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH 118 (213)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCGGG--------------------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHHHhHHHhhh------------------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh
Confidence 3456666666666666655443221 1122445666677778888888888777765543211
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHh---hcCChHHHHHHHHHHHhhccCChHHHh
Q 040316 158 VRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILV---DSKNNWLLIKVLKIFAKLATLEPRLAK 234 (957)
Q Consensus 158 vR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~---~~~npWlqIkILkLL~~l~p~ep~L~~ 234 (957)
....+.+.+-+.++++-+.-+++..++....+ .-.+.++.++. .....+.|--+=-+|+.+...+|....
T Consensus 119 -~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 119 -PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp -GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred -HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 22345566677788888888888777666555 11234444443 346667777777778888777776655
Q ss_pred HHH
Q 040316 235 RVV 237 (957)
Q Consensus 235 kLl 237 (957)
.++
T Consensus 192 ~~l 194 (213)
T PF08713_consen 192 EFL 194 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 159
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=55.94 E-value=45 Score=41.96 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhh-cCCChhHHHHHHHHHHHhhhcCCCCccCchHH
Q 040316 123 QFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENL-ESSEPVILSAVVGVFCELCLKDPRSYLPLAPE 201 (957)
Q Consensus 123 p~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL-~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~ 201 (957)
+..|--||+.||.+.... -+.+.+++.+ ..|+.|..+| .|.++.|+.+|+.+|+-+.++-|....+..|.
T Consensus 82 ~~~Rl~~L~Ll~~~v~~q-----p~~l~~i~~t----~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~ 152 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQ-----PPWLYKILQT----PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPD 152 (668)
T ss_pred chhHHHHHHHHHHHHhcC-----CchHHHHhcC----hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 456777888887765421 1233333333 2344444444 49999999999999999999888754444555
Q ss_pred HHHHHh
Q 040316 202 FYKILV 207 (957)
Q Consensus 202 L~~iL~ 207 (957)
||.++.
T Consensus 153 Lf~If~ 158 (668)
T PF04388_consen 153 LFNIFG 158 (668)
T ss_pred HHHHHH
Confidence 555443
No 160
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.99 E-value=6.2e+02 Score=33.27 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhhcC-CCCccCchHHHHHHHhh-------cCChHHHHHHHHHHHhhc
Q 040316 176 ILSAVVGVFCELCLKD-PRSYLPLAPEFYKILVD-------SKNNWLLIKVLKIFAKLA 226 (957)
Q Consensus 176 Vv~AAv~vL~EI~~~n-p~~~l~Lap~L~~iL~~-------~~npWlqIkILkLL~~l~ 226 (957)
=..||..++..++.++ +..+-++.+-.+.+|+. ..++...=-.|++++.++
T Consensus 388 p~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~ 446 (1010)
T KOG1991|consen 388 PDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA 446 (1010)
T ss_pred CcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH
Confidence 3457888899999988 55676777777888873 123443334455555444
No 161
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=54.78 E-value=3.5e+02 Score=34.35 Aligned_cols=116 Identities=9% Similarity=0.118 Sum_probs=68.9
Q ss_pred HHHHHhhhcCcccHHHHHHHHH----HHhhhcChHHHHHHHHHHHHHHhhhhcccc-cchHHHHHHHHHhhccCCcchHH
Q 040316 330 SLRLLMSMVSESNVAEISRVLI----NYALKSDPEFCNQILGSILSTCCRNLYEVI-VDFDWYASLLGEMVRIPHCQKGE 404 (957)
Q Consensus 330 ALeLL~~Lvne~Nv~~IV~ELl----~yl~~sD~~~r~elI~aI~~ic~~~~y~~~-~dfeWyvdvLl~Ll~~~~~~v~~ 404 (957)
|..+....--+.+...++.+|. .+....+.---.-.+...+.++++ .|+.+ .-++-|-.++-++..-... -.-
T Consensus 503 ~~~l~~~~~~k~~~e~~~~iLk~~~~~~~~~~n~~~i~lfvq~~l~lGSK-SfSH~f~~lek~~~vfk~l~~~~e~-~q~ 580 (759)
T KOG1104|consen 503 AVQLIVAFREKATAEEIVNILKSEDESEIGSFNRLKIILFVQTLLDLGSK-SFSHAFSALEKYHTVFKKLCEDSET-KQI 580 (759)
T ss_pred HHHHHHHHhccCCHHHHHHHHhcCccccccCCcceehhhHHHHHHHhccc-hhhhHHHHHHHHHHHHHHHhcCCch-hHH
Confidence 7888888889999999999998 222222222233455777778877 34322 2235566666555543222 234
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccC
Q 040316 405 EIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEY 457 (957)
Q Consensus 405 eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY 457 (957)
.+++.+-..-..+|.+---++.++..+. ++ .-.+++-||.+|-
T Consensus 581 ~vl~~vft~Wk~n~Qm~~v~~Dkml~~~----ii------~~~aVv~WiF~~~ 623 (759)
T KOG1104|consen 581 IVLEAVFTFWKANPQMGFVLTDKMLKYQ----II------DCSAVVRWIFSEE 623 (759)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHhccc----cc------cHHHHHHHhcCHH
Confidence 5667777777777765544444443211 11 2356788999874
No 162
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=53.83 E-value=49 Score=32.80 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=39.7
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW 306 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~ 306 (957)
.+.+..++.+-.|=. .+...+.|+..|++=|.+++|++.+.+|..|-.++.....
T Consensus 16 ~dw~~~l~icD~i~~----~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~ 70 (133)
T smart00288 16 EDWELILEICDLINS----TPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGS 70 (133)
T ss_pred cCHHHHHHHHHHHhC----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH
Confidence 345666666555422 1233466888888888899999999999999999987543
No 163
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=53.44 E-value=3e+02 Score=36.10 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccC-C-CHHHHHHHHHHHhhhcCc----
Q 040316 268 ESAVKLAVVKVREFLV-DDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSD-G-DYNIKLESLRLLMSMVSE---- 340 (957)
Q Consensus 268 ~~li~l~v~~L~~fL~-ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D-~-D~sIR~~ALeLL~~Lvne---- 340 (957)
++.+....+....|+. +...+.|-++|..+.+++++..+...-.+..||..+.| | ....+. -|++|..++++
T Consensus 62 e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l~I~R~~FF~vI~~~p~~edL~~-rLe~L~~LTDnG~~I 140 (1697)
T KOG3687|consen 62 EHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERLGILRALFFKVIKDYPSNEDLHE-RLEVLKALTDNGRHI 140 (1697)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcchHHHHH-HHHHHHHHhhCCccc
Confidence 3455566666777774 45568899999999999988766655556666666653 2 122333 36777777765
Q ss_pred ccHHHHHHHHHH-Hhh--------------------hcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhcc--
Q 040316 341 SNVAEISRVLIN-YAL--------------------KSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRI-- 397 (957)
Q Consensus 341 ~Nv~~IV~ELl~-yl~--------------------~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~-- 397 (957)
.|+++=+..++- ++. ..|..+..-++..++.+|++..-+ .+ --|+.++.-.+..
T Consensus 141 t~~Ee~iG~f~l~W~~~~l~~~~L~~lvnl~kfn~~~lD~~i~~l~vq~~c~lc~~t~~~--i~-~~~l~~l~~v~~y~~ 217 (1697)
T KOG3687|consen 141 TYLEEELGDFVLQWMDVGLSSEFLLVLVNLVKFNSCYLDEYIARLMVQMICLLCVRTASS--VD-IEVLQVLDAVVCYNC 217 (1697)
T ss_pred cchHHHHHHHHHHHHHhhcccHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhccc--cc-hhhhhhhhhheeeee
Confidence 344443333321 111 125677778888888888874211 11 1133332211110
Q ss_pred -----------------CCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhc
Q 040316 398 -----------------PHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSG 455 (957)
Q Consensus 398 -----------------~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlG 455 (957)
......+..|..+++++..+ .--.++..+|.++.|.+.+++ ..+++.+++-+|
T Consensus 218 ~P~e~lpQ~I~tlcrt~nv~~~C~~~~k~m~nllgth--lg~~~~~~mc~~~~drA~~eD---a~llrgavf~~~ 287 (1697)
T KOG3687|consen 218 LPAESLPQFIVTLCRTINVKELCEPCWKLMRNLLGTH--LGHSAIYNMCHLMEDRAYMED---APLLRGAVFFVG 287 (1697)
T ss_pred cccchHHHHHHHHhcccchhhcCchHHHHHHhhhhcc--cchHHHHHHHhhhhhhhhhcc---chhhcchhhhcc
Confidence 01112334555566655432 223467788888887665543 345666666555
No 164
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=53.38 E-value=25 Score=34.70 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=36.9
Q ss_pred HHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCccc
Q 040316 296 ALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESN 342 (957)
Q Consensus 296 ~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~N 342 (957)
-|..+....+..+..-.+.++..|++.++.||.++|.+|-.+|...+
T Consensus 24 Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 24 EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 34555556677777788888899999999999999999887776653
No 165
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=51.74 E-value=1.4e+02 Score=35.95 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHhhcCCc--H----HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC
Q 040316 250 KSLLFECIRTVLSSLSEY--E----SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKH 304 (957)
Q Consensus 250 ~SVLyE~I~~Ii~~l~~~--~----~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~ 304 (957)
+-++-.|++|......+. + .++-..++.+..++.++|+|++.-+|..|..|+.+|
T Consensus 121 ~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 121 SQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred chhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 456666666655543321 1 234457788889999999999999999999998876
No 166
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=51.60 E-value=1.6e+02 Score=30.86 Aligned_cols=126 Identities=10% Similarity=0.107 Sum_probs=80.3
Q ss_pred HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc--ccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccc
Q 040316 306 WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE--SNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVD 383 (957)
Q Consensus 306 ~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne--~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~d 383 (957)
.++|+|.+.|+.+.-++|..+|..|++++..+... -|=...+..|+.-..+.++.++..+..-.-.++++. ++++.
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~-~s~v~- 81 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH-ESLVE- 81 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh-HHHHH-
Confidence 57899999999998889999999999998654333 122345666777666777888888777766677652 22221
Q ss_pred hHHHHHHH---HHhhc-cCCcc---h---HHHHHHHHHHHHHhcCcchHHHHHHHHHHhcC
Q 040316 384 FDWYASLL---GEMVR-IPHCQ---K---GEEIEHQIIDIAMRVKDVRPALVHVCRNLLID 434 (957)
Q Consensus 384 feWyvdvL---l~Ll~-~~~~~---v---~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d 434 (957)
.-|.+.+ .++-. ..++. . .......+-.++...+..|...++.+++.+.+
T Consensus 82 -~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~ 141 (187)
T PF12830_consen 82 -SRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDF 141 (187)
T ss_pred -HHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 1233322 11111 11111 1 45566677777776667788888888877754
No 167
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.10 E-value=2.5e+02 Score=32.64 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCCCch-HHHHHHHHHHHHhhhChHHHhhh-----hHhhcccccC--CCHHHHHHHHHHHhhhcCcccHH
Q 040316 274 AVVKVREFLVDDDPN-LKYLGLQALSIIAPKHLWAVLEN-----KDFVIKSLSD--GDYNIKLESLRLLMSMVSESNVA 344 (957)
Q Consensus 274 ~v~~L~~fL~ssDpN-lrYvaL~~L~~Iv~~~p~~v~~h-----~~~Il~cL~D--~D~sIR~~ALeLL~~Lvne~Nv~ 344 (957)
+..+|...|.+++++ .|--||-+++.++..++-....+ ...+..+|.+ .+.-.+++++.|+..++.+....
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 455666666655555 55889999999998887544433 3556667776 56777888999988887665443
No 168
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=51.01 E-value=1.6e+02 Score=30.15 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHhh-cCCCchHHHHHHHHHHHHhhhChHHHh
Q 040316 276 VKVREFL-VDDDPNLKYLGLQALSIIAPKHLWAVL 309 (957)
Q Consensus 276 ~~L~~fL-~ssDpNlrYvaL~~L~~Iv~~~p~~v~ 309 (957)
+.|.++| ++.++.+|--+++.|..|...+|...+
T Consensus 13 ~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 13 DILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 3444555 335689999999999999988887655
No 169
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=50.79 E-value=1.2e+02 Score=38.39 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=86.2
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHH
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICE 242 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~ 242 (957)
.+|..+|+..|.+|+--+-.++.+......+.|+ +..++.-..... -..++.+|... .+|. .+.+++.|.+
T Consensus 7 ~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~y~~~t~----s~~~~~il~~~--~~P~-~K~~~~~l~~ 77 (668)
T PF04388_consen 7 TELLSLLESNDLSVLEEIKALLQELLNSDREPWL--VNGLVDYYLSTN----SQRALEILVGV--QEPH-DKHLFDKLND 77 (668)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHhhccchHHH--HHHHHHHHhhcC----cHHHHHHHHhc--CCcc-HHHHHHHHHH
Confidence 4567788889999988888888877765544432 222222211111 12334444433 2332 2345666666
Q ss_pred HhhcCCcchHHHHHHHHHHhhcCC-cHHHH-----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhc
Q 040316 243 FMRRTEAKSLLFECIRTVLSSLSE-YESAV-----KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVI 316 (957)
Q Consensus 243 lL~~t~a~SVLyE~I~~Ii~~l~~-~~~li-----~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il 316 (957)
.+.+. .-=+.++.++.+.+.. .+.+. .+.-+.|..+..+.+..+-..||.+|..|+..-|..+.+|...+|
T Consensus 78 ~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf 154 (668)
T PF04388_consen 78 YFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLF 154 (668)
T ss_pred HHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 66542 2234444444443221 11121 122333333446788888889999999999988888888888887
Q ss_pred ccccCCCHHHHHHHHHH
Q 040316 317 KSLSDGDYNIKLESLRL 333 (957)
Q Consensus 317 ~cL~D~D~sIR~~ALeL 333 (957)
++++|...-+.
T Consensus 155 ------~If~Rl~~W~~ 165 (668)
T PF04388_consen 155 ------NIFGRLLSWER 165 (668)
T ss_pred ------HHHHHHHHccc
Confidence 35666654443
No 170
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.71 E-value=4.9e+02 Score=33.09 Aligned_cols=209 Identities=15% Similarity=0.184 Sum_probs=120.4
Q ss_pred hhHHHHHhhcCCCch--HHHHHHHHHHHHhcCCCHHHHHHHHHhhcc---CCchhhH-hhhHHHHHHhhhhhhHHHHHHH
Q 040316 91 IGYHAVTQSFNDDTP--VILLITNQLRKDLNSSNQFEVSLALECLSR---IGNVDLA-RDLTPEVFTLLSSNAVRVCFKR 164 (957)
Q Consensus 91 lGYLaas~~~~~~~d--lllLatNtLkKDL~s~Np~vr~LALr~Ls~---I~tpeLa-~~L~~~V~klL~~~AvR~~~~k 164 (957)
+||.+-..-.+..-| +..|.-..|-+-|+-+|-.+|+.|+..+-+ |+.|++- ++.-. -+..=|..
T Consensus 154 l~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~---------i~~kQf~~ 224 (1005)
T KOG1949|consen 154 LSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDS---------IIQKQFEE 224 (1005)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHH---------HHHHHHHH
Confidence 555544333555544 334777889999999999999999887765 3455542 11111 11122556
Q ss_pred HHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHh
Q 040316 165 LVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFM 244 (957)
Q Consensus 165 L~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL 244 (957)
+..+|.|+-|+|-+.|+-=+|.+... |+.++|.- ...+++..+.+-+
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~-----------------------------i~~~ll~kI~d~~ 271 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPT-----------------------------ILIDLLKKITDEL 271 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHH-----------------------------HHHHHHHHHHHHh
Confidence 78899999999999988777766432 22222221 1112222222222
Q ss_pred hcCCcchH---HHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh-HHHhh-hhHhhcccc
Q 040316 245 RRTEAKSL---LFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL-WAVLE-NKDFVIKSL 319 (957)
Q Consensus 245 ~~t~a~SV---LyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p-~~v~~-h~~~Il~cL 319 (957)
.+-+..+| +|+++.-++. .+.+..+.+.....|+-.|.++..-+|..+.+.|.+|-...- .++.- -.+.++..|
T Consensus 272 a~dt~s~VR~svf~gl~~~l~-np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L 350 (1005)
T KOG1949|consen 272 AFDTSSDVRCSVFKGLPMILD-NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRL 350 (1005)
T ss_pred hhccchheehhHhcCcHHHHc-CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHH
Confidence 22222233 4555554433 244445667777788888888888889888888887754321 11111 235555566
Q ss_pred cCCCHHHHHHHHHHHhhhcCccc
Q 040316 320 SDGDYNIKLESLRLLMSMVSESN 342 (957)
Q Consensus 320 ~D~D~sIR~~ALeLL~~Lvne~N 342 (957)
.-...-+.++-+.+++..+=+.|
T Consensus 351 ~~d~~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 351 ETDSRPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred hccccHHHHHHHHHHHHhhcCCC
Confidence 54445666666777776665544
No 171
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=50.60 E-value=53 Score=33.06 Aligned_cols=86 Identities=16% Similarity=0.069 Sum_probs=54.0
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHHhhhChHHHhh------hhHh-hcccc
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLV-DDDPNLKYLGLQALSIIAPKHLWAVLE------NKDF-VIKSL 319 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~-ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~-Il~cL 319 (957)
.+-++.+|.+-.|=. .+...+.|+..|++=|. +.++++.+.+|..+-.+++....-|.. +.+. +...+
T Consensus 17 ~dw~~ileicD~In~----~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i 92 (141)
T cd03565 17 EDWGLNMEICDIINE----TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLI 92 (141)
T ss_pred cCHHHHHHHHHHHhC----CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHH
Confidence 456777776665422 12234567777777665 568999999999999999876544432 3333 33333
Q ss_pred c---CCCHHHHHHHHHHHhhh
Q 040316 320 S---DGDYNIKLESLRLLMSM 337 (957)
Q Consensus 320 ~---D~D~sIR~~ALeLL~~L 337 (957)
+ +++..||.+.|+++...
T Consensus 93 ~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 93 NPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred cccCCCcHHHHHHHHHHHHHH
Confidence 3 23456777777777554
No 172
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=50.52 E-value=1.2e+02 Score=38.03 Aligned_cols=111 Identities=21% Similarity=0.160 Sum_probs=71.5
Q ss_pred ChHHHhHHHHHHHHHhhcCC---cchHHHHHHHHHHhhcCCcHHHH---HH----HHHHHHHhhcCCCchHHHHHHHHHH
Q 040316 229 EPRLAKRVVEPICEFMRRTE---AKSLLFECIRTVLSSLSEYESAV---KL----AVVKVREFLVDDDPNLKYLGLQALS 298 (957)
Q Consensus 229 ep~L~~kLl~~L~~lL~~t~---a~SVLyE~I~~Ii~~l~~~~~li---~l----~v~~L~~fL~ssDpNlrYvaL~~L~ 298 (957)
.|.+.-+-++.+..++.+.+ --+++=-|.|.+.+...+ ++.+ .+ .++.|..-+.+..|-.||-||..+.
T Consensus 293 ~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d-~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~ 371 (1128)
T COG5098 293 SPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKD-GQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLE 371 (1128)
T ss_pred CchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcc-hhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 34333333455556664421 136666777877765332 2222 22 3333333346788999999999999
Q ss_pred HHhhhChH---HHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc
Q 040316 299 IIAPKHLW---AVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 299 ~Iv~~~p~---~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne 340 (957)
+|...... --++....+..|+.|...-+|+.|+.|+.++...
T Consensus 372 kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 372 KIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred HHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 99875533 3344567778899999888999999999988654
No 173
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.25 E-value=6.5e+02 Score=32.11 Aligned_cols=170 Identities=16% Similarity=0.129 Sum_probs=97.9
Q ss_pred hhHHHHHHHHhhcChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC--CCcchhHHHHHH-hh----cCCC
Q 040316 13 RDLDDLIKGIRQQQIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHG--ADMSFAAFHAVE-VM----SSPQ 85 (957)
Q Consensus 13 rsL~dfIr~IR~~k~~E~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G--~DmS~~~f~VVe-lm----sS~~ 85 (957)
+=+..||..+-..+ .|..+++.-+..+-+-..+++...|.+.++ +|.+-| | ..++...|+-+. -| -..-
T Consensus 64 ~fla~fv~sl~q~d-~e~DlV~~~f~hlLRg~Eskdk~VRfrvlq-ila~l~--d~~~eidd~vfn~l~e~l~~Rl~Dre 139 (892)
T KOG2025|consen 64 SFLARFVESLPQLD-KEEDLVAGTFYHLLRGTESKDKKVRFRVLQ-ILALLS--DENAEIDDDVFNKLNEKLLIRLKDRE 139 (892)
T ss_pred HHHHHHHHhhhccC-chhhHHHHHHHHHHhcccCcchhHHHHHHH-HHHHHh--ccccccCHHHHHHHHHHHHHHHhccC
Confidence 34566777776443 344488888888877888888877777554 555433 6 345555555544 22 2333
Q ss_pred ccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhc-CCCHHHHHHHHHhhccCCch-----hhHhhhHHHHHHhhhh---h
Q 040316 86 FFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLN-SSNQFEVSLALECLSRIGNV-----DLARDLTPEVFTLLSS---N 156 (957)
Q Consensus 86 ~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~-s~Np~vr~LALr~Ls~I~tp-----eLa~~L~~~V~klL~~---~ 156 (957)
...|+=+-++++.+-...-|.-.=++|+++-=++ ||++-+|..||.+|+.=.+. +=++|+...+.++.-. +
T Consensus 140 p~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lp 219 (892)
T KOG2025|consen 140 PNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLP 219 (892)
T ss_pred chHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhh
Confidence 4456666777776553322333345565554443 58999999999998864331 2233333333333332 1
Q ss_pred hHHHHHH------H-HHhhhcCCChhHHHHHHHHHHH
Q 040316 157 AVRVCFK------R-LVENLESSEPVILSAVVGVFCE 186 (957)
Q Consensus 157 AvR~~~~------k-L~elL~D~D~sVv~AAv~vL~E 186 (957)
.++.++. . +..-|+|.+-+|-.|+.-.+..
T Consensus 220 kid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 220 KIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 1111111 1 2234779999999998877654
No 174
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=50.02 E-value=3.9e+02 Score=30.41 Aligned_cols=111 Identities=17% Similarity=0.281 Sum_probs=64.7
Q ss_pred CCccCchHHHHHHHhhcCC-hHHHHHHH---HHHHhhccCChHHHhHHHHHHHHHh-----hcC---------CcchHHH
Q 040316 193 RSYLPLAPEFYKILVDSKN-NWLLIKVL---KIFAKLATLEPRLAKRVVEPICEFM-----RRT---------EAKSLLF 254 (957)
Q Consensus 193 ~~~l~Lap~L~~iL~~~~n-pWlqIkIL---kLL~~l~p~ep~L~~kLl~~L~~lL-----~~t---------~a~SVLy 254 (957)
..|..+.|.|.+++.+... +=....++ -++..++-.++.....+++.+..+. ... ...+|+-
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 4566777888887776432 22223334 4444445556655553444444222 111 1235665
Q ss_pred HHHHH---HHhhcCC--cHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh
Q 040316 255 ECIRT---VLSSLSE--YESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK 303 (957)
Q Consensus 255 E~I~~---Ii~~l~~--~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~ 303 (957)
.++.. ++..++. -.......+.+|..+|.++|.++|..|=.+|..|...
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 55553 3333343 1234466888899999999999999999999888653
No 175
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=49.85 E-value=1.9e+02 Score=30.09 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhh
Q 040316 277 KVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALK 356 (957)
Q Consensus 277 ~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~ 356 (957)
-+..+..+.-.+.+|+|+..+...........-.....++...++- ..+-..+-.++..++... ......+..++.+
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~W-~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~s 131 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLTEEDLELLEKWLPDIDNW-ATCDSLCSKLLGPLLKKH--PEALELLEKWAKS 131 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG--HHHHHHHHHCCCCCCCH-HHHHHHTHHHHHHHHHHH--GGHHHHHHHHHHC
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhccCCcc-hhhhHHHHHHHHHHHHhh--HHHHHHHHHHHhC
Confidence 3444556677888888888876655433322233344444433332 111222233333322211 3344555566665
Q ss_pred cChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcc
Q 040316 357 SDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDV 420 (957)
Q Consensus 357 sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~i 420 (957)
.+.-.++-.+...+..+. ..+++.+++++..++.....++...++-.|+++..++|+.
T Consensus 132 ~~~w~rR~~~v~~~~~~~------~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 132 DNEWVRRAAIVMLLRYIR------KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp SSHHHHHHHHHCTTTHGG------GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred CcHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 555445544433322211 1445556666656666666667777778888887776654
No 176
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=49.66 E-value=2.4e+02 Score=29.35 Aligned_cols=85 Identities=20% Similarity=0.108 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhhhC--------hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccH-HHHH------HHHHH
Q 040316 288 NLKYLGLQALSIIAPKH--------LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNV-AEIS------RVLIN 352 (957)
Q Consensus 288 NlrYvaL~~L~~Iv~~~--------p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv-~~IV------~ELl~ 352 (957)
++--.+|.++..++... +.++++-...+- -.-.|.+|-.++|.+|-.||..+.- ...| ..|+.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn--~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVN--SSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHc--cccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHH
Confidence 44455777777776632 233333333322 2223789999999999999876654 3333 67889
Q ss_pred HhhhcChHHHHHHHHHHHHHHh
Q 040316 353 YALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 353 yl~~sD~~~r~elI~aI~~ic~ 374 (957)
|++..+.+++..++.-|-.+..
T Consensus 110 hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHh
Confidence 9999999888887766654443
No 177
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=47.84 E-value=5.7e+02 Score=30.71 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=53.9
Q ss_pred HHHHHHHHhh-cCCCchHHHHHHHHHHHHhhhCh---HHHhh--hhHhhcccccCCCHHHHHHHHHHHhhh
Q 040316 273 LAVVKVREFL-VDDDPNLKYLGLQALSIIAPKHL---WAVLE--NKDFVIKSLSDGDYNIKLESLRLLMSM 337 (957)
Q Consensus 273 l~v~~L~~fL-~ssDpNlrYvaL~~L~~Iv~~~p---~~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~L 337 (957)
..+++|..+| .++||.+--||+.=+..++..|| .++.. -+..||.+++++|+.||..||-.+..|
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3667788888 57899999999999999999998 34444 467899999999999999999887765
No 178
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=47.22 E-value=8.2e+02 Score=32.40 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHh---hhhHhhcccccCCCHHHHHHHHHHHhhhcCc
Q 040316 272 KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVL---ENKDFVIKSLSDGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 272 ~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~---~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne 340 (957)
.-....|+.++.+.-.-+|-.++.+|..+....|.+|+ .....+++.++|.+..+-.+|+.+|..+..+
T Consensus 615 e~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 615 EVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred hhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 33456677777777778899999999999999998773 3445667778999899999999988877766
No 179
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=46.45 E-value=6.2e+02 Score=30.95 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=55.7
Q ss_pred HHHHHHHhhc---CCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHH
Q 040316 274 AVVKVREFLV---DDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVL 350 (957)
Q Consensus 274 ~v~~L~~fL~---ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~EL 350 (957)
++..|..++. ..++.+|..|+.+|.+++..+|..+++..-.||.--. .|..||..|+.+|+.. +++ ..++..+
T Consensus 478 ~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~-e~~EvRiaA~~~lm~t-~P~--~~~l~~i 553 (574)
T smart00638 478 SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRA-EPPEVRMAAVLVLMET-KPS--VALLQRI 553 (574)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCC-CChHHHHHHHHHHHhc-CCC--HHHHHHH
Confidence 4455666664 2356799999999999999999998887777764433 4588999999998763 444 3444555
Q ss_pred HHHhhh
Q 040316 351 INYALK 356 (957)
Q Consensus 351 l~yl~~ 356 (957)
..++..
T Consensus 554 a~~l~~ 559 (574)
T smart00638 554 AELLNK 559 (574)
T ss_pred HHHHhh
Confidence 555544
No 180
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.33 E-value=9e+02 Score=32.59 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHh
Q 040316 236 VVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIA 301 (957)
Q Consensus 236 Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv 301 (957)
.++.+.++|.. ...+.+.|||..+..+..-.-.....++.++..++-++|++++=..+.+...+.
T Consensus 542 ~~~ii~~ll~s-~t~teV~E~Idfl~~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~ 606 (1251)
T KOG0414|consen 542 AIPIISQLLFS-KTTTEVKEAIDFLVRCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLY 606 (1251)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHh
Confidence 34555555544 557899999998765421111223567888888888889997666555554443
No 181
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=45.35 E-value=6.1e+02 Score=30.38 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=38.9
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHH-----HHHHHhhcC-----CCchHHHHHHHHHHHHhhhCh
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAV-----VKVREFLVD-----DDPNLKYLGLQALSIIAPKHL 305 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v-----~~L~~fL~s-----sDpNlrYvaL~~L~~Iv~~~p 305 (957)
....+..||.+|+++.+-.++...+.++ ..+...|.. .+.++.|+.++.|-.+....+
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~ 111 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP 111 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh
Confidence 4568899999999987665555544332 334444432 378999999998877766443
No 182
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=45.01 E-value=35 Score=25.01 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=12.8
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHh
Q 040316 278 VREFLVDDDPNLKYLGLQALSIIA 301 (957)
Q Consensus 278 L~~fL~ssDpNlrYvaL~~L~~Iv 301 (957)
+..++.+.++++|+.+..+|..|+
T Consensus 5 l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 5 LLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 344455555666666666555554
No 183
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.94 E-value=80 Score=38.07 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=42.9
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhh------hHhhccccc-C-CCHHHHHHHHHHHh
Q 040316 273 LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLEN------KDFVIKSLS-D-GDYNIKLESLRLLM 335 (957)
Q Consensus 273 l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h------~~~Il~cL~-D-~D~sIR~~ALeLL~ 335 (957)
-++..|.+-|.++.+.++|+||..|-.+++..-..|..+ ....+.+.+ . +|.-||.++|.||.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 566777777888889999999998888888765554432 233333433 2 56667777777653
No 184
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=44.35 E-value=4.4e+02 Score=32.04 Aligned_cols=162 Identities=15% Similarity=0.243 Sum_probs=90.3
Q ss_pred CCChhHHHHHHHHHHHhhhcCCCCcc--CchHHHHHHHh--h--------cCChHHHHHHHHHHHhhccCChHHHhHHHH
Q 040316 171 SSEPVILSAVVGVFCELCLKDPRSYL--PLAPEFYKILV--D--------SKNNWLLIKVLKIFAKLATLEPRLAKRVVE 238 (957)
Q Consensus 171 D~D~sVv~AAv~vL~EI~~~np~~~l--~Lap~L~~iL~--~--------~~npWlqIkILkLL~~l~p~ep~L~~kLl~ 238 (957)
|.+..|...|-..+-.+... |. .++-.||.+.. . -.++-.|.|||.+|.+=.. -......++.
T Consensus 248 d~~~~V~~~ae~~LKr~~~~----~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-Aa~~~~~~~~ 322 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS----LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-AATSFPNILQ 322 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC----CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-HHhCCccHHH
Confidence 66666666665555433322 32 35667777766 2 2567788888888876211 0111122334
Q ss_pred HHHHHhhcC-Cc---chHHHHHH---HHHHhhcCCcHHHHHHH----HHHHHHhhc--------CCCchHHHHHHHHHHH
Q 040316 239 PICEFMRRT-EA---KSLLFECI---RTVLSSLSEYESAVKLA----VVKVREFLV--------DDDPNLKYLGLQALSI 299 (957)
Q Consensus 239 ~L~~lL~~t-~a---~SVLyE~I---~~Ii~~l~~~~~li~l~----v~~L~~fL~--------ssDpNlrYvaL~~L~~ 299 (957)
.+..-+... .+ .+.-++-+ .-++...+ +..++.. .+.+...+. +.+.++|-.+..+|..
T Consensus 323 i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~--~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~ 400 (501)
T PF13001_consen 323 IVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS--PQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGL 400 (501)
T ss_pred HHhccccCCccccccchhcchhhhcchHHhhhcC--HHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHH
Confidence 444334332 11 12223333 22222111 2222222 222223332 3467899999999999
Q ss_pred HhhhChHHHhh---hhHhhcccccCCCHHHHHHHHHHHhhhcC
Q 040316 300 IAPKHLWAVLE---NKDFVIKSLSDGDYNIKLESLRLLMSMVS 339 (957)
Q Consensus 300 Iv~~~p~~v~~---h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn 339 (957)
|++++|.+|.. ....+|..|.+++..||.-.-+-|..|+.
T Consensus 401 L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 401 LAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999999855 45666778888888888877776666643
No 185
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=44.27 E-value=47 Score=39.12 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHhh---cCCcHHHHHH--HHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 040316 235 RVVEPICEFMRRTEAKSLLFECIRTVLSS---LSEYESAVKL--AVVKVREFLVDDDPNLKYLGLQALSIIAP 302 (957)
Q Consensus 235 kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~---l~~~~~li~l--~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~ 302 (957)
+++..|..++++++.+.++-=|.+=|.++ .|....++.. +-..+.+++++.|||+||=||.++.+++.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 45666777777655454443333333332 2332222221 33445567788888888888888777653
No 186
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=43.27 E-value=39 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=25.6
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELC 188 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~ 188 (957)
++|.|.++|.+.|+.|...|+.+|..|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999886
No 187
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=42.98 E-value=2.1e+02 Score=32.78 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhcCC---CchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHh
Q 040316 268 ESAVKLAVVKVREFLVDD---DPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLM 335 (957)
Q Consensus 268 ~~li~l~v~~L~~fL~ss---DpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~ 335 (957)
|..+..++..|+..+... ++.++|.++..+.-+--..|.++.++.-.+.. ..|++..| |.|-++.
T Consensus 153 P~~lr~i~~~l~~~v~~kFp~~~~~~~~~V~gfiFLRfi~PAIvsP~~f~l~~--~~p~~~~r-R~L~lIa 220 (315)
T cd05128 153 PTVMCDIFYQLRERVGERFPGDPDVQYLAVSSFLFLRFFAPAILSPKLFHLRP--HHADARTS-RTLLLLS 220 (315)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCccchHHHHHHHHHHHHHhHHhcChHhcCCCC--CCCCHHHH-HHHHHHH
Confidence 444455556666555332 23567777777776666778888877655542 33444444 3555543
No 188
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=42.87 E-value=6.7e+02 Score=30.11 Aligned_cols=142 Identities=13% Similarity=0.155 Sum_probs=78.3
Q ss_pred ChHHHhHHHHHHHHHhhcCCcchHHHHHHH---HHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh
Q 040316 229 EPRLAKRVVEPICEFMRRTEAKSLLFECIR---TVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL 305 (957)
Q Consensus 229 ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~---~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p 305 (957)
++.....+++.+..+-.+|+....+-.|+. +|+.+..-..+-+..|+..|.+..... ++.=.+.+.|..|+..|-
T Consensus 170 ~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~ 247 (464)
T PF11864_consen 170 DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL 247 (464)
T ss_pred CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc
Confidence 444445566666666455555555555544 333322222345666888888776443 666668888888887663
Q ss_pred -HHHhhhhHhhc--ccc-cCCCHHHHHHHHHHHhhhcCcc---cH-----HH--HHHHHHHHhhhcChHHHHHHHHHHHH
Q 040316 306 -WAVLENKDFVI--KSL-SDGDYNIKLESLRLLMSMVSES---NV-----AE--ISRVLINYALKSDPEFCNQILGSILS 371 (957)
Q Consensus 306 -~~v~~h~~~Il--~cL-~D~D~sIR~~ALeLL~~Lvne~---Nv-----~~--IV~ELl~yl~~sD~~~r~elI~aI~~ 371 (957)
...-...-.|+ ..- +..|..+-+=|+.++-.+.-.. .+ .. ++.-|..-+...+.-.--+++..|-.
T Consensus 248 g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ 327 (464)
T PF11864_consen 248 GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINR 327 (464)
T ss_pred HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHH
Confidence 33334444444 111 1345667777888887665444 22 22 66666666665555444455544433
Q ss_pred H
Q 040316 372 T 372 (957)
Q Consensus 372 i 372 (957)
+
T Consensus 328 l 328 (464)
T PF11864_consen 328 L 328 (464)
T ss_pred H
Confidence 3
No 189
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=42.64 E-value=1.2e+02 Score=37.95 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh-HHH-hhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHH
Q 040316 270 AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL-WAV-LENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEIS 347 (957)
Q Consensus 270 li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p-~~v-~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV 347 (957)
..+..+..|..++.+.|.-+|.+-|+.+-+.+..-+ +.+ .+-...+..-+.|.|..||..+|.-+.-++..=|-..+=
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 344566677778888899999988888887765432 222 233455666778888899988877766666555544444
Q ss_pred HHHHHHhhh
Q 040316 348 RVLINYALK 356 (957)
Q Consensus 348 ~ELl~yl~~ 356 (957)
.||++|+.+
T Consensus 407 ~Ellr~~ar 415 (690)
T KOG1243|consen 407 GELLRYLAR 415 (690)
T ss_pred HHHHHHHHh
Confidence 666666643
No 190
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=41.55 E-value=7.4e+02 Score=30.28 Aligned_cols=64 Identities=3% Similarity=-0.070 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCCccchhhhHH--HHHhhc-CCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCC
Q 040316 74 AFHAVEVMSSPQFFYKKIGYH--AVTQSF-NDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIG 137 (957)
Q Consensus 74 ~f~VVelmsS~~~~~KRlGYL--aas~~~-~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~ 137 (957)
+..+.+.+.+.+.......-+ ++.... +++.+++-.+-..++.+-..++++++.-|+-+++++.
T Consensus 359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 444445566666553222221 222222 3444444444444444444445555555555555443
No 191
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=41.21 E-value=5.9e+02 Score=29.04 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=26.8
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD 208 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~ 208 (957)
..++.+.+.+.-+.+..+.+....++..++-..|..+...+|++|..
T Consensus 100 i~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~ 146 (319)
T PF08767_consen 100 INKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRA 146 (319)
T ss_dssp HHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHH
Confidence 44555555555566666666666666666655555455556655543
No 192
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.89 E-value=1e+03 Score=31.41 Aligned_cols=69 Identities=17% Similarity=0.049 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHH---hhhChHH----HhhhhHhhcccccCCCHHHHHHHHHHHhhhcC
Q 040316 271 VKLAVVKVREFLVDDDPNLKYLGLQALSII---APKHLWA----VLENKDFVIKSLSDGDYNIKLESLRLLMSMVS 339 (957)
Q Consensus 271 i~l~v~~L~~fL~ssDpNlrYvaL~~L~~I---v~~~p~~----v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn 339 (957)
+..+..+-..||++.+.-+|.-+|..|... .+.+++. +.....-++.|+.+.|+.+-.+|+.++..|+.
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 344555556788999999999999998764 4566654 44456778899999999999999999987753
No 193
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=1.2e+02 Score=37.19 Aligned_cols=146 Identities=13% Similarity=0.185 Sum_probs=80.5
Q ss_pred HhhcccccCCCHHHHHH-HHHHHhhhcCcccHHHHHHHHHHH-hhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHH
Q 040316 313 DFVIKSLSDGDYNIKLE-SLRLLMSMVSESNVAEISRVLINY-ALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASL 390 (957)
Q Consensus 313 ~~Il~cL~D~D~sIR~~-ALeLL~~Lvne~Nv~~IV~ELl~y-l~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdv 390 (957)
+.|-..+.|.|+..|.- ++.+-.+-|--.|. .+|+.|+.| +.+.+++.|+.++.+|+-+|.++ |. -.+.
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~-~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-~~------~lv~- 589 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNL-GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-RD------LLVG- 589 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcc-hhHhhhheeecccCchHHHHHHHHheeeeEecC-cc------hhhH-
Confidence 44556778888888874 55666666777775 467899999 77789999999999999999874 32 2233
Q ss_pred HHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCC-CCCHHHHHH
Q 040316 391 LGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEF-SRNPFELME 469 (957)
Q Consensus 391 Ll~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~-i~~p~~iL~ 469 (957)
.++++.-+.+.+...-.....-|+..... -..++..+..+..|+. +..-+.+.-+.+.|+-..-+. .++...+.+
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag~G-~~~a~diL~~L~~D~~---dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k 665 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAGTG-DKVATDILEALMYDTN---DFVRQSAMIAVGMILMQCNPELNPNVKRIIK 665 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcCCc-cHHHHHHHHHHhhCcH---HHHHHHHHHHHHHHHhhcCcccChhHHHHHH
Confidence 34555444332221111222223222222 1223344444444431 112344555566666555433 234455555
Q ss_pred HH
Q 040316 470 AL 471 (957)
Q Consensus 470 ~L 471 (957)
.+
T Consensus 666 ~f 667 (926)
T COG5116 666 KF 667 (926)
T ss_pred HH
Confidence 44
No 194
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=37.41 E-value=1.2e+03 Score=33.03 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHH---HHhhhcCCChhHHHHHHHHHHHhhhcCCCCc
Q 040316 158 VRVCFKR---LVENLESSEPVILSAVVGVFCELCLKDPRSY 195 (957)
Q Consensus 158 vR~~~~k---L~elL~D~D~sVv~AAv~vL~EI~~~np~~~ 195 (957)
.+.|||- |.+...|.++.|-..|+.+|.++...+...|
T Consensus 1342 ~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1342 LYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 3567764 4455679999999999999999998877654
No 195
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=37.11 E-value=1.5e+02 Score=30.15 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhccCChHHHh------HHHHHHHHHhh-cCCcchHHHHHHHHHHhhcCCc---HHHHHHHHHHHHHhh-
Q 040316 214 LLIKVLKIFAKLATLEPRLAK------RVVEPICEFMR-RTEAKSLLFECIRTVLSSLSEY---ESAVKLAVVKVREFL- 282 (957)
Q Consensus 214 lqIkILkLL~~l~p~ep~L~~------kLl~~L~~lL~-~t~a~SVLyE~I~~Ii~~l~~~---~~li~l~v~~L~~fL- 282 (957)
..+.++..++.+-|.-|.... .+++.+.+.+. ......+...+..++...-.+. ..+.+.++..|...+
T Consensus 59 ~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 59 SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555554432 23344444444 2233334444444433321111 112345666666666
Q ss_pred cCCCch-HHHHHHHHHHH
Q 040316 283 VDDDPN-LKYLGLQALSI 299 (957)
Q Consensus 283 ~ssDpN-lrYvaL~~L~~ 299 (957)
.+++.. +|..|+..|.+
T Consensus 139 ~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 139 NSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp TCC-HH-CHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHhc
Confidence 333344 56666665554
No 196
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=36.87 E-value=7.8e+02 Score=29.14 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=44.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHH-----HHhhhcCCCCccCchHHHHHHHhh-cCChHH---HHHHHHHHHhhccCCh
Q 040316 160 VCFKRLVENLESSEPVILSAVVGVF-----CELCLKDPRSYLPLAPEFYKILVD-SKNNWL---LIKVLKIFAKLATLEP 230 (957)
Q Consensus 160 ~~~~kL~elL~D~D~sVv~AAv~vL-----~EI~~~np~~~l~Lap~L~~iL~~-~~npWl---qIkILkLL~~l~p~ep 230 (957)
..|.++..++.+.+..|.-.|+.++ ..+...+.. .+.|.+|.-|.. ..+-|- +-....++..+...+|
T Consensus 297 ~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~---~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 297 PLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSR---VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHH---HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 5678888999999999999987754 333333332 245666665544 456673 4444455555555666
Q ss_pred HHHhHH
Q 040316 231 RLAKRV 236 (957)
Q Consensus 231 ~L~~kL 236 (957)
.+..++
T Consensus 374 ~lf~~~ 379 (409)
T PF01603_consen 374 KLFDKC 379 (409)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 197
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=36.82 E-value=3.9e+02 Score=25.68 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhcC-CCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 040316 176 ILSAVVGVFCELCLKD-PRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLA 226 (957)
Q Consensus 176 Vv~AAv~vL~EI~~~n-p~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~ 226 (957)
|..-...++.+|+.+. |..|..+.+.++..+.. ++......|++|..+.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS--SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc--chhHHHHHHHHHHHHH
Confidence 3444556677777665 88888888888888765 4666666666666653
No 198
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=36.66 E-value=7e+02 Score=30.34 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCC--CHHHHHH
Q 040316 51 TKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSS--NQFEVSL 128 (957)
Q Consensus 51 ~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~--Np~vr~L 128 (957)
.-...+.+|..|++ |..+ ..+--.--.++.+..|-++||-=+..+....+- ++..+.-.|.++ |.-.+.+
T Consensus 269 ed~~~V~~L~~Ly~--G~~~---~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~---~~~i~~~~l~~~~~~~klk~~ 340 (501)
T PF13001_consen 269 EDPDLVDRLFDLYL--GKGI---PPENGRPPASPRLQEKILSLLSKSVIAATSFPN---ILQIVFDGLYSDNTNSKLKSL 340 (501)
T ss_pred CCHHHHHHHHHHHH--hcCC---chhcCCCCCCHHHHHHHHHHHHHhHHHHhCCcc---HHHHHhccccCCccccccchh
Confidence 44566778888763 6100 111111235778889999999776555433332 223344467777 6788889
Q ss_pred HHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHH----hhhcCCChhHHHHHHHHHHHhhhcCCCCc
Q 040316 129 ALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLV----ENLESSEPVILSAVVGVFCELCLKDPRSY 195 (957)
Q Consensus 129 ALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~----elL~D~D~sVv~AAv~vL~EI~~~np~~~ 195 (957)
|+.++. ..........+.+.+.+..--....||.+. +.....+....+-|.-+|-.++++.|..+
T Consensus 341 ~l~F~~--~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~ 409 (501)
T PF13001_consen 341 ALQFIR--GSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF 409 (501)
T ss_pred cchhhh--cchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc
Confidence 999984 222222222223222222200011122221 01123566778888889999999998865
No 199
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=36.39 E-value=4.9e+02 Score=29.84 Aligned_cols=65 Identities=5% Similarity=-0.051 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHh
Q 040316 268 ESAVKLAVVKVREFLVDDDP---NLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLM 335 (957)
Q Consensus 268 ~~li~l~v~~L~~fL~ssDp---NlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~ 335 (957)
|..+..++..|+.-+...-| .+.|.++..+.-+--..|.+++++.-.+.. ..|+...| |.|-++.
T Consensus 147 P~~lr~i~~~l~~~v~~kfp~~~~~~~~~Vg~FiFLRFicPAIvsP~~f~L~~--~~p~~~~r-R~L~lIa 214 (315)
T cd05391 147 PPTLRYIYGCLQKSVQAKWPTNTTMRTRVVSGFVFLRLICPAILNPRMFNIIS--DAPSPVAC-RTLMMVA 214 (315)
T ss_pred CHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHhccccCChhhcCCcc--CCCCHHHH-HHHHHHH
Confidence 33344455555555533222 244555555555555677777776655442 33545554 4555543
No 200
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=35.85 E-value=7e+02 Score=32.17 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh-ChHHHhhhhHhhccccc-CCCHHHHHHHHHHHhh
Q 040316 268 ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK-HLWAVLENKDFVIKSLS-DGDYNIKLESLRLLMS 336 (957)
Q Consensus 268 ~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~-~p~~v~~h~~~Il~cL~-D~D~sIR~~ALeLL~~ 336 (957)
+-..+.....+..+..+..+|+|+-++..|.++.+. ++......+..+..+|. |+|..+|.+|......
T Consensus 591 ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 591 EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 344466667777777788888888888888888764 45555555555555543 7778888877665443
No 201
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=35.74 E-value=42 Score=38.28 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=14.0
Q ss_pred hhhcccccccCccccccc
Q 040316 921 KEKRKSNHHRGKHKAHQR 938 (957)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~ 938 (957)
+.+.+|+-|.|+-|.|-|
T Consensus 338 R~~srsrSrsg~~~sr~r 355 (367)
T KOG0835|consen 338 RHRSRSRSRSGRDSSRSR 355 (367)
T ss_pred hccccCCCCCCCCccccc
Confidence 667778888888888777
No 202
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=35.35 E-value=2.3e+02 Score=28.75 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=38.4
Q ss_pred HHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 329 ESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 329 ~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
+.+.-+..=.++.|+..++.+|.+.....+++....++..|...|..
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~ 48 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVE 48 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhc
Confidence 34555555567999999999999998888889999999999877665
No 203
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=35.15 E-value=9.2e+02 Score=32.85 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=129.5
Q ss_pred HhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHH-HHHhhccCCchhhHhhhHHHHHHhhhh--
Q 040316 79 EVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSL-ALECLSRIGNVDLARDLTPEVFTLLSS-- 155 (957)
Q Consensus 79 elmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~L-ALr~Ls~I~tpeLa~~L~~~V~klL~~-- 155 (957)
+-++.+.+..|+.+| ++.+..-+++.++..+.-+.+....+.++ |...+.--..|+- +.|-|.+++.+
T Consensus 588 ~~~~~~~~~~~q~l~------~~ss~~~v~~~~~~~k~~~~~~~~~i~s~~a~~~~~~~~~pek---l~p~I~plm~tik 658 (1549)
T KOG0392|consen 588 EEYSENDFLEKQVLY------LDSSRQQVLMTIEILKNRCKLLEIRIKSLLASAVVTFETLPEK---LNPIIRPLMETIK 658 (1549)
T ss_pred hhhcccccCCchhee------ecchhhHHHhhHHHHHHHHhhcchhhhhchhhHHHHHhcCchh---hhhHHHHHHHHHH
Confidence 346777788888888 44556678888888888888766544433 2222222223332 23333333333
Q ss_pred ---hh-----HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcC----CCC---cc----CchHHH--HHHHhh------
Q 040316 156 ---NA-----VRVCFKRLVENLESSEPVILSAVVGVFCELCLKD----PRS---YL----PLAPEF--YKILVD------ 208 (957)
Q Consensus 156 ---~A-----vR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n----p~~---~l----~Lap~L--~~iL~~------ 208 (957)
++ -+.+.+++.....|..|.+..+.+.=+|+.--.. |.. +. .+.+.. +.....
T Consensus 659 ~e~n~~~q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p~~~p~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~g 738 (1549)
T KOG0392|consen 659 KEENAMLQPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDPSRAPGLGASIRSIHPMVDPLINDYTRMVASNLAPG 738 (1549)
T ss_pred hhhHhHhHHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCcccCCccccccccccccccccccchhhhhccccCcc
Confidence 12 2345566666666777665555555444443222 220 00 000000 000000
Q ss_pred ---c---------CChHHHHHHHHHHHh-hccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHH--HHH
Q 040316 209 ---S---------KNNWLLIKVLKIFAK-LATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESA--VKL 273 (957)
Q Consensus 209 ---~---------~npWlqIkILkLL~~-l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~l--i~l 273 (957)
. ..+...--+-+.|+. |...-|.+..-+..++.+.+..+....--++..+++...+. ..+ +-.
T Consensus 739 ~eea~~~~~~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~--s~l~~~~~ 816 (1549)
T KOG0392|consen 739 LEEAQALISFERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMH--SFLHPLGS 816 (1549)
T ss_pred hhhhhhhHHHHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhh--hhhhhhhh
Confidence 0 111111111122221 11122444444555565555543222333555555443221 111 112
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhhC-hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPKH-LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~-p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
-..+|-.|+.+..+++||.+.+++..+.+.- .+........|+..++|-|-..|+..-+.++.++
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l 882 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELL 882 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHH
Confidence 3445556668899999999999999887754 3556667788899999998888887766665543
No 204
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.14 E-value=1.5e+02 Score=37.47 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HhhcccccCCCHHHHHH-HHHHHhhhcCcccHHHHHHHHHHH-hhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHH
Q 040316 313 DFVIKSLSDGDYNIKLE-SLRLLMSMVSESNVAEISRVLINY-ALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASL 390 (957)
Q Consensus 313 ~~Il~cL~D~D~sIR~~-ALeLL~~Lvne~Nv~~IV~ELl~y-l~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdv 390 (957)
..|-..+.|.|+.+|.- .+.+...-|-..|-..| +.|++| +.+.+.+.|+.++.+||-+|.+ |.+.|+.+
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkai-r~lLh~aVsD~nDDVrRaAVialGFVl~~-------dp~~~~s~ 593 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAI-RRLLHVAVSDVNDDVRRAAVIALGFVLFR-------DPEQLPST 593 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhH-HHhhcccccccchHHHHHHHHHheeeEec-------ChhhchHH
Q ss_pred HHHhhccCCcch---------------HHHHHHHHHHHHHhcCc--chHHHHHHHHHHhcCCcccCCCchHHHHHHHhhh
Q 040316 391 LGEMVRIPHCQK---------------GEEIEHQIIDIAMRVKD--VRPALVHVCRNLLIDPALLGNPFLHRILSAAAWV 453 (957)
Q Consensus 391 Ll~Ll~~~~~~v---------------~~eI~~~L~dIi~rvp~--ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWI 453 (957)
+--|...-+.++ |......+.+=+...|. +|+.+.-.+.-++....-.-++....+.+-..=+
T Consensus 594 V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kv 673 (929)
T KOG2062|consen 594 VSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKV 673 (929)
T ss_pred HHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHH
Q ss_pred hcc
Q 040316 454 SGE 456 (957)
Q Consensus 454 lGE 456 (957)
+++
T Consensus 674 I~d 676 (929)
T KOG2062|consen 674 IND 676 (929)
T ss_pred hhh
No 205
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=33.73 E-value=2.2e+02 Score=31.82 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=19.6
Q ss_pred HhhcccccCCCHHHHHHHHHHHhhhcCcc
Q 040316 313 DFVIKSLSDGDYNIKLESLRLLMSMVSES 341 (957)
Q Consensus 313 ~~Il~cL~D~D~sIR~~ALeLL~~Lvne~ 341 (957)
..|+..+||.++.+|.+.+.+|..+...-
T Consensus 122 P~iL~llDD~~~~~K~~G~~lL~~ll~~~ 150 (282)
T PF10521_consen 122 PPILNLLDDYSPEIKIQGCQLLHHLLEKV 150 (282)
T ss_pred hhHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 34455667777777777777777776533
No 206
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=33.29 E-value=2.3e+02 Score=29.01 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=27.3
Q ss_pred CchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh
Q 040316 197 PLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK 234 (957)
Q Consensus 197 ~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~ 234 (957)
.|.+.|+++|.+..+.=+-...||+++.+...||--.+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 45666777787774433568889999999888886544
No 207
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=32.54 E-value=1.2e+03 Score=29.90 Aligned_cols=186 Identities=16% Similarity=0.183 Sum_probs=100.7
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhcc----CChHHHhHHHH-
Q 040316 164 RLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLAT----LEPRLAKRVVE- 238 (957)
Q Consensus 164 kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p----~ep~L~~kLl~- 238 (957)
.|...+-..+..=..-++.+++-++..+|..+ +..+..+|....++-..--++|+++.... .-+.+....++
T Consensus 185 ~Lc~~lL~~n~~r~~w~~rLL~lL~~~~Psi~---~~~~~~lL~~A~~~~~l~lli~L~~~~~~~~~~~~~~l~~~vle~ 261 (696)
T PF14838_consen 185 ELCKELLSLNRKRQQWAHRLLCLLSSQHPSIA---IEAISYLLTKAQNPEHLALLIRLYAGLSVVNFPSLPGLFPAVLEQ 261 (696)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCchH---HHHHHHHHHhcCCHHHHHHHHHHHhcccCCccccccchHHHHHHH
Confidence 34433333356666677888888887777654 23355667777777777777787777655 22222111111
Q ss_pred HHHHH----hhcCCcchHHHHHHHHHHhhcC--C-c--------HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh
Q 040316 239 PICEF----MRRTEAKSLLFECIRTVLSSLS--E-Y--------ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK 303 (957)
Q Consensus 239 ~L~~l----L~~t~a~SVLyE~I~~Ii~~l~--~-~--------~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~ 303 (957)
.+..+ +.. ....-++.=+..++++-. . . ...+..+...+..+|..+|+++--.+...|..+-..
T Consensus 262 ~l~~i~~~~lt~-~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~lL~~~~~~~~~~~v~lL~~l~~~ 340 (696)
T PF14838_consen 262 CLRQIHTNTLTP-TEATQLLQNLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQLLLHSDPEVAHAAVKLLDLLPLP 340 (696)
T ss_pred HHHHHhcCCCCc-HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCc
Confidence 11111 100 111222222333332210 0 0 012234555666777788888888887777766321
Q ss_pred -----Ch----HHHhhhhHhhcccccCCCHHHHH----HHHHHHhhhcCcc--cHHHHHHHHHHH
Q 040316 304 -----HL----WAVLENKDFVIKSLSDGDYNIKL----ESLRLLMSMVSES--NVAEISRVLINY 353 (957)
Q Consensus 304 -----~p----~~v~~h~~~Il~cL~D~D~sIR~----~ALeLL~~Lvne~--Nv~~IV~ELl~y 353 (957)
.| .+.+.-...||.||...|.+=+. ++-.+|..+|..+ -...++++|++-
T Consensus 341 ~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~vLr~LlE~ 405 (696)
T PF14838_consen 341 EKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKAVLRELLEG 405 (696)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 22 23466778899999987666555 4556666666553 334455666554
No 208
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=32.04 E-value=3.5e+02 Score=25.92 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhc-CCCchHHHHHHHHHHHHhhhC---hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcc-cHHHH
Q 040316 272 KLAVVKVREFLV-DDDPNLKYLGLQALSIIAPKH---LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES-NVAEI 346 (957)
Q Consensus 272 ~l~v~~L~~fL~-ssDpNlrYvaL~~L~~Iv~~~---p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~-Nv~~I 346 (957)
......+...|. ++.++.+.-++..+..++.+- ++++..-.+.+.......+. .+.+|-.|..++... +...+
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~l 82 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDSL 82 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcccccccC
Confidence 334455566665 778899888888888887654 57888888888777766544 678898888888777 66655
Q ss_pred HHHHHHHhhhcC
Q 040316 347 SRVLINYALKSD 358 (957)
Q Consensus 347 V~ELl~yl~~sD 358 (957)
=++..+++...+
T Consensus 83 p~~~~~~l~~~~ 94 (121)
T PF12397_consen 83 PRKVFKALLKLP 94 (121)
T ss_pred CHHHHHHHHcCc
Confidence 555555555443
No 209
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=31.56 E-value=8.3e+02 Score=27.87 Aligned_cols=124 Identities=11% Similarity=0.218 Sum_probs=70.6
Q ss_pred HHHHHHHhhccCC--h-HHHhHHHHHHHHH-h---hcCC---cchHHHHHHHHHHhhc-----CCcHHHHHHHHHHHHHh
Q 040316 217 KVLKIFAKLATLE--P-RLAKRVVEPICEF-M---RRTE---AKSLLFECIRTVLSSL-----SEYESAVKLAVVKVREF 281 (957)
Q Consensus 217 kILkLL~~l~p~e--p-~L~~kLl~~L~~l-L---~~t~---a~SVLyE~I~~Ii~~l-----~~~~~li~l~v~~L~~f 281 (957)
.||+++.+|...- + .....+++++.+. + +++. -.+-++.+..+++..+ +.-+.+...+......+
T Consensus 46 eIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~M 125 (319)
T PF08767_consen 46 EILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPM 125 (319)
T ss_dssp HHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4677777765432 2 2344455554432 2 2221 1244555555555432 22345566667777777
Q ss_pred hcC---CCchHHHHHHHHHHHHhhh--------ChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc
Q 040316 282 LVD---DDPNLKYLGLQALSIIAPK--------HLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 282 L~s---sDpNlrYvaL~~L~~Iv~~--------~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne 340 (957)
+.. .-|+.|---...|..+... .|..+....+.++-.+++++..|...+|++|..|.+.
T Consensus 126 I~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 126 INKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 743 3466654444444444443 4556666777777788999999999999998766543
No 210
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=31.41 E-value=82 Score=32.89 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhc
Q 040316 252 LLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVI 316 (957)
Q Consensus 252 VLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il 316 (957)
..|||+.+++......-.+.. ..+.+..=|.+ +..||.++...+.+++..+|..+..+.+.+.
T Consensus 46 ~ayE~lytlLd~~~~~~~~~~-~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~ 108 (169)
T PF08623_consen 46 AAYECLYTLLDTCLSRIDISE-FLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLV 108 (169)
T ss_dssp HHHHHHHHHHHSTCSSS-HHH-HHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTH
T ss_pred HHHHHHHHHHHHHHHhCCHHH-HHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 478888888764322212222 23444333344 8999999999999999999998887755444
No 211
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=31.17 E-value=5.2e+02 Score=26.11 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=59.0
Q ss_pred CchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcC-CChhHHHHHH
Q 040316 103 DTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLES-SEPVILSAVV 181 (957)
Q Consensus 103 ~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D-~D~sVv~AAv 181 (957)
+++-.--++..|+|=|+++||.+.-+||..|-.+. ..-...+..-+. =+.+...|..++.+ .++.|..-++
T Consensus 31 ~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~v-----kNCG~~fh~eva---sk~Fl~eL~kl~~~~~~~~Vk~kil 102 (144)
T cd03568 31 DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACA-----ENCGKRFHQEVA---SRDFTQELKKLINDRVHPTVKEKLR 102 (144)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHCCHHHHHHHh---hHHHHHHHHHHhcccCCHHHHHHHH
Confidence 33445577889999999999999988887664321 111111111111 12344556666666 6777887788
Q ss_pred HHHHHhhhcCCC-CccCchHHHHHHHhh
Q 040316 182 GVFCELCLKDPR-SYLPLAPEFYKILVD 208 (957)
Q Consensus 182 ~vL~EI~~~np~-~~l~Lap~L~~iL~~ 208 (957)
.++.+.....+. .-.+.+..+|+.|..
T Consensus 103 ~li~~W~~~f~~~~~l~~i~~~y~~L~~ 130 (144)
T cd03568 103 EVVKQWADEFKNDPSLSLMSDLYKKLKN 130 (144)
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 888777654432 223456777887765
No 212
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=31.02 E-value=7.7e+02 Score=27.35 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=10.2
Q ss_pred HHHHHHHhhcCChHHHHHHHH
Q 040316 200 PEFYKILVDSKNNWLLIKVLK 220 (957)
Q Consensus 200 p~L~~iL~~~~npWlqIkILk 220 (957)
+.++.++.+...+|..-++++
T Consensus 118 ~~~~~L~~d~~gn~Vvq~~l~ 138 (322)
T cd07920 118 GHVVELVKDQNGNHVIQKCIE 138 (322)
T ss_pred HCHHHHhhcccccHHHHHHHH
Confidence 444455554445555444444
No 213
>KOG4712 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.52 E-value=6.6e+02 Score=32.95 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=65.3
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccC----CCHHHHHHHHHHHhhhcCcccHHHHHHH
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSD----GDYNIKLESLRLLMSMVSESNVAEISRV 349 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D----~D~sIR~~ALeLL~~Lvne~Nv~~IV~E 349 (957)
....|-.+|.+ ++-+--.+|+.| .+...+|.++.+-++.++.|+.. .=++.- ..+.--++.-|+..|+.+
T Consensus 222 v~~~L~~~L~e-n~s~VvAVld~l-s~l~ld~~~~l~~I~lvISC~~~i~~eHlP~Li----~f~lh~~t~~NVR~~is~ 295 (1335)
T KOG4712|consen 222 VGKELSDLLIE-NTSLVVAVLDVL-SSLRLDPNFLLKVIQLVISCLSSIRLEHLPVLI----KFILHSVTAMNVREVISE 295 (1335)
T ss_pred HHHHHHHHHhc-CCceeeeHHhhh-hccccChHHHHHHHHHHHHHHHhhcccccHHHH----HHHHHhCCcccHHHHHHH
Confidence 34444444433 344444455533 33445677777777888888731 112222 222223899999999999
Q ss_pred HHHHhhh-cChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHH
Q 040316 350 LINYALK-SDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQII 411 (957)
Q Consensus 350 Ll~yl~~-sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~ 411 (957)
+-++.-. ....-+..+-.++-.-+. +| -+..+-.++++..-++..+. +.+|++.++.
T Consensus 296 ~r~q~~v~~~~~q~~~v~~kLkg~~s--~~--esEg~~iLdv~~s~ir~~N~-i~QE~ik~i~ 353 (1335)
T KOG4712|consen 296 LREQHCVLPSRLQASQVKLKLKGRAS--NQ--ESEGILLLDVIKSAIRYENT-ISQEWIKAIE 353 (1335)
T ss_pred HHHHHhcccccccHHHHHHHHhcccc--cc--ccchhHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence 9844332 211111222222222222 12 13344567777777776655 5566655554
No 214
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.39 E-value=5.4e+02 Score=31.23 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=24.9
Q ss_pred HHHHHh-hhcCCChhHHHHHHHHHHHhhhcCCCCcc
Q 040316 162 FKRLVE-NLESSEPVILSAVVGVFCELCLKDPRSYL 196 (957)
Q Consensus 162 ~~kL~e-lL~D~D~sVv~AAv~vL~EI~~~np~~~l 196 (957)
+.+|.+ +|.+...+++.++++++.++.+++...|.
T Consensus 120 v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknnsdy~ 155 (475)
T PF04499_consen 120 VEKLLDIMLNSQGGSSLVNGVSILIELIRKNNSDYD 155 (475)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcccccc
Confidence 334444 45545588889999999999988866654
No 215
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.80 E-value=1.5e+03 Score=29.69 Aligned_cols=171 Identities=15% Similarity=0.239 Sum_probs=97.0
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCcc----CchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHH
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKDPRSYL----PLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVE 238 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l----~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~ 238 (957)
.+-...+.|+-+-+.+.|+.-+-.+.+++.+.-+ .+...+...|. ..+++.-...++.+..++-..|+ ++++
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk-dedsyvyLnaI~gv~~Lcevy~e---~il~ 805 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK-DEDSYVYLNAIRGVVSLCEVYPE---DILP 805 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc-ccCceeeHHHHHHHHHHHHhcch---hhHH
Confidence 4445567788899999999999999886633111 11122223333 47889889999988888876553 4444
Q ss_pred HHHH-HhhcC-----CcchHHHHHHHHHHhhcCCcHHHHHHHH-HHHHHhh---cCCCchHHHHHHHHHHHHhhhChHHH
Q 040316 239 PICE-FMRRT-----EAKSLLFECIRTVLSSLSEYESAVKLAV-VKVREFL---VDDDPNLKYLGLQALSIIAPKHLWAV 308 (957)
Q Consensus 239 ~L~~-lL~~t-----~a~SVLyE~I~~Ii~~l~~~~~li~l~v-~~L~~fL---~ssDpNlrYvaL~~L~~Iv~~~p~~v 308 (957)
-+.+ ..+.+ .-.-.+-|+|-=++.... ++...-. ..+..|+ .++|...|.-++.++..+++..---+
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G---el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG---ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 4444 22221 122445566554444221 2211111 1122233 34556668888888888887654333
Q ss_pred hh----hhHhhccccc-CCCHHHHHHHHHHHhhhcCc
Q 040316 309 LE----NKDFVIKSLS-DGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 309 ~~----h~~~Il~cL~-D~D~sIR~~ALeLL~~Lvne 340 (957)
+. ....|+.... |.-.-+||-|..++..+-+.
T Consensus 883 sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 883 SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 33 2222322222 55578899999988776553
No 216
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=27.80 E-value=6.8e+02 Score=28.83 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhh
Q 040316 268 ESAVKLAVVKVREFLVD---DDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMS 336 (957)
Q Consensus 268 ~~li~l~v~~L~~fL~s---sDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~ 336 (957)
|..+..+...|+..... ++..++|.++..+.-+=-..|.+++++.-.+.. ..|+...| |.|-++.+
T Consensus 152 P~~lr~i~~~lr~~v~~rFp~~~~~~~~aVsgFlFLRF~cPAIlSP~lf~L~~--~~p~~~~~-RtLtLIaK 220 (313)
T cd05394 152 PTVMCDIFYSLRHMAVKRFPNDPHVQYSAVSSFVFLRFFAVAVVSPHTFHLRP--HHPDAQTS-RTLTLISK 220 (313)
T ss_pred cHHHHHHHHHHHHHHHHHCCChHhhHHHHHHHHHHHHHhhhhhcCcccccccC--CCCChhhh-HHHHHHHH
Confidence 44455555666655432 235578888888877777788888887766653 45555555 46666543
No 217
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.36 E-value=1.6e+03 Score=30.00 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=49.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhChHHHhh--hhHhhcccccCCCHHHHHHHHHHHhhhcCc
Q 040316 283 VDDDPNLKYLGLQALSIIAPKHLWAVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 283 ~ssDpNlrYvaL~~L~~Iv~~~p~~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne 340 (957)
.+-+|+||-+.+..|..=++.+|..|-. |.+.|==.|+|....||++.|..|-.+...
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999987754 667766679999999999999999888665
No 218
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=27.14 E-value=3.3e+02 Score=30.73 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHH-------------HHHHHHHhhhcCCChhH
Q 040316 110 ITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVR-------------VCFKRLVENLESSEPVI 176 (957)
Q Consensus 110 atNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR-------------~~~~kL~elL~D~D~sV 176 (957)
+||.|-.-|...+..+|--+=-+++.+.+|.-+..|..-+...-.|+-|| .|.+-|.+.+.|.++.|
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~~vL~e~~~D~~~vv 267 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDCVEVLKEYLGDEERVV 267 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHHHHHHHHcCCcHHHH
Confidence 34555666666666666666666666666665555554444443343333 24566778888888888
Q ss_pred HHHHHHHHHHhhhcCCCC
Q 040316 177 LSAVVGVFCELCLKDPRS 194 (957)
Q Consensus 177 v~AAv~vL~EI~~~np~~ 194 (957)
--++..+|--+-..|.+.
T Consensus 268 ~esc~valdm~eyens~~ 285 (289)
T KOG0567|consen 268 RESCEVALDMLEYENSKE 285 (289)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 777777665555555443
No 219
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=27.04 E-value=75 Score=36.37 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=13.2
Q ss_pred HHHHHhcCCCCCCCchhhhhhHHH
Q 040316 600 IVELALGPLSRSHDVEIQERARNV 623 (957)
Q Consensus 600 ~i~~~l~~~~~s~~~EVQERA~~~ 623 (957)
.|+.+|.-+-.-++..+-.+|-+|
T Consensus 144 lii~YLqtL~~~~~~~l~Q~~wNf 167 (367)
T KOG0835|consen 144 LIIMYLQTLQLPPNLKLLQAAWNF 167 (367)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHh
Confidence 345555555555555555556554
No 220
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=26.80 E-value=3e+02 Score=32.54 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHH
Q 040316 293 GLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILST 372 (957)
Q Consensus 293 aL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~i 372 (957)
.+.-++-.+..+|+.-+..++.|+..|+..|+-|-++||.|+-+++ .|+..++.. .+
T Consensus 28 ~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~--~NCg~~~r~---------------------EV 84 (462)
T KOG2199|consen 28 LILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACV--ANCGKRFRL---------------------EV 84 (462)
T ss_pred HHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHH--HhcchHHHH---------------------HH
Q ss_pred HhhhhcccccchHHHHHHHHHhhc-cCCcchHHHHHHHHHHHHHhcC-cchHHHHHHHHHHh
Q 040316 373 CCRNLYEVIVDFDWYASLLGEMVR-IPHCQKGEEIEHQIIDIAMRVK-DVRPALVHVCRNLL 432 (957)
Q Consensus 373 c~~~~y~~~~dfeWyvdvLl~Ll~-~~~~~v~~eI~~~L~dIi~rvp-~ir~~av~~l~~lL 432 (957)
|+++ |.+-|..|+. .....+...+...+.+..--++ +-.-.++..+++-|
T Consensus 85 sSr~----------F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~kl 136 (462)
T KOG2199|consen 85 SSRD----------FTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKL 136 (462)
T ss_pred hhhh----------HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
No 221
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=26.78 E-value=9.6e+02 Score=27.54 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhc---CCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhh
Q 040316 269 SAVKLAVVKVREFLV---DDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMS 336 (957)
Q Consensus 269 ~li~l~v~~L~~fL~---ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~ 336 (957)
..+..+...|+..+. ..+++.+|.++..+.-+=-..|.+++++.-.+... .|++..| |.|-|+.+
T Consensus 153 ~~l~~i~~~lr~~v~~rf~~~~~~~~~aVggFiFLRF~cPAIlsP~~f~L~~~--~p~~~~~-RtLtLIaK 220 (310)
T cd05134 153 TVMCDIFFSLRESAAKRFQVDPDVRYTAVSSFIFLRFFAPAILSPNLFQLTPH--HPDPQTS-RTLTLISK 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhccccCCchhcccccC--CCChhhh-HHHHHHHH
Confidence 334444555555442 45688999999998888778899998887666533 3545554 46666543
No 222
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=26.73 E-value=8.7e+02 Score=30.20 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCC
Q 040316 278 VREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDG 322 (957)
Q Consensus 278 L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~ 322 (957)
|..+|.+-+|.-+.+.-..+..|.+..|+.++.++..+...+.|.
T Consensus 204 l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds 248 (851)
T KOG3723|consen 204 LLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDS 248 (851)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Confidence 444555556555555445555566677777777777666555544
No 223
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=26.64 E-value=5.1e+02 Score=31.86 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=36.5
Q ss_pred HHHHhhhcCcccHHHHHHHHHHH-hhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHH
Q 040316 331 LRLLMSMVSESNVAEISRVLINY-ALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEH 408 (957)
Q Consensus 331 LeLL~~Lvne~Nv~~IV~ELl~y-l~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~ 408 (957)
+.=|..=+|.+|++.|+.+|+.- +...-.-|++.++.+= ++ .+.|-=....|+.++...-..+|+.++.
T Consensus 168 InglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq--~a-------sp~ft~vyaALvAviNskfP~IgElLlk 237 (739)
T KOG2140|consen 168 INGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQ--AA-------SPGFTPVYAALVAVINSKFPQIGELLLK 237 (739)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHH--hc-------CCCCcHHHHHHHHHHccCCchHHHHHHH
Confidence 44455567999999999998742 2222233334333321 11 1222224555666666655555554443
No 224
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.77 E-value=5.7e+02 Score=26.35 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccC---CCHHHHHHHHHHHhhhcCcc--cH
Q 040316 269 SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSD---GDYNIKLESLRLLMSMVSES--NV 343 (957)
Q Consensus 269 ~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D---~D~sIR~~ALeLL~~Lvne~--Nv 343 (957)
++++++.+++..- ++.+-..| .+.|..|+..+|..+.+|.+.+-..++. -...+...-+.-+.-++.-+ =-
T Consensus 55 ~Ile~l~~rI~~~--s~~~~~~~--idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s~~lr 130 (158)
T PF14676_consen 55 EILEQLLNRIVTK--SSSPSSQY--IDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFSPSLR 130 (158)
T ss_dssp HHHHHHHHHHHH----SS--HHH--HHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhc--CccchhHH--HHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 4455555554332 33344677 5888999999999999988877665552 22333333333333333322 22
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHHHH
Q 040316 344 AEISRVLINYALKSDPEFCNQILGSIL 370 (957)
Q Consensus 344 ~~IV~ELl~yl~~sD~~~r~elI~aI~ 370 (957)
..++--|.+-+-..+.+.|.-++..++
T Consensus 131 d~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 131 DSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 334455555555566677766666543
No 225
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.65 E-value=9e+02 Score=26.37 Aligned_cols=142 Identities=15% Similarity=0.238 Sum_probs=68.9
Q ss_pred hcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhh-hhhhHHHHH-------HHHHhhhcCCChhHHHHHHHHHHHhhh
Q 040316 118 LNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLL-SSNAVRVCF-------KRLVENLESSEPVILSAVVGVFCELCL 189 (957)
Q Consensus 118 L~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL-~~~AvR~~~-------~kL~elL~D~D~sVv~AAv~vL~EI~~ 189 (957)
|++.++.+.=-|+.+.++ +.+.+++.+ .+.....+| ..+..++.+.++||-.+|+..+..+.-
T Consensus 2 l~d~d~~v~K~~I~~~~~---------iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTS---------IYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp CT-SSHHHHHHHHHHHHH---------HHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH---------HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345566666566655544 455555555 332222222 356667888899999999998877753
Q ss_pred cC--CCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccC----C----hHHHhHHHHHHHHHhhcCC-cchHHHHHHH
Q 040316 190 KD--PRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL----E----PRLAKRVVEPICEFMRRTE-AKSLLFECIR 258 (957)
Q Consensus 190 ~n--p~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~----e----p~L~~kLl~~L~~lL~~t~-a~SVLyE~I~ 258 (957)
-. +...- .+. ....+.|- |....+. . ...+..+++.|...+.... ...++..|++
T Consensus 73 ~qs~~~~~~--~~~-----~~~~~d~S-------L~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~in 138 (239)
T PF11935_consen 73 VQSPGSSDS--PPR-----RGSPNDFS-------LSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIIN 138 (239)
T ss_dssp HTS---TTS----------GGGTTS---------GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHH
T ss_pred hcCCCCCCC--ccc-----cccccCCC-------HHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 21 10000 000 00011111 0000000 1 1245567777777776644 4566677777
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhh
Q 040316 259 TVLSSLSEYESAVKLAVVKVREFL 282 (957)
Q Consensus 259 ~Ii~~l~~~~~li~l~v~~L~~fL 282 (957)
++......-+..+..++..|..|-
T Consensus 139 sL~~Iak~RP~~~~~Il~~ll~~~ 162 (239)
T PF11935_consen 139 SLSNIAKQRPQFMSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcC
Confidence 655543333444555555555553
No 226
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.21 E-value=1.2e+03 Score=27.53 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=42.1
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCC---CchHHHHHHHHHHHHhhhC---hHHHhhhhHhh-ccccc
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDD---DPNLKYLGLQALSIIAPKH---LWAVLENKDFV-IKSLS 320 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ss---DpNlrYvaL~~L~~Iv~~~---p~~v~~h~~~I-l~cL~ 320 (957)
.+-..+++|+.-. ......++.+.|.+.|+.+-.+. +.-++--++..+..++.+| |.++++-.-.| +.||.
T Consensus 283 GGl~tl~~~i~d~--n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 283 GGLDTLLRCIDDS--NEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR 360 (461)
T ss_pred cCHHHHHHHHhhh--chhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc
Confidence 4556677765421 11223456778888887776332 2334555666666666544 66665543222 34677
Q ss_pred CCCHH
Q 040316 321 DGDYN 325 (957)
Q Consensus 321 D~D~s 325 (957)
.||.+
T Consensus 361 ~pdhs 365 (461)
T KOG4199|consen 361 SPDHS 365 (461)
T ss_pred CcchH
Confidence 77655
No 227
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.05 E-value=1.2e+03 Score=30.38 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcCC-ChhHHHHHHHHHHHhhhc---CCCCccCchHHHHHHH
Q 040316 160 VCFKRLVENLESS-EPVILSAVVGVFCELCLK---DPRSYLPLAPEFYKIL 206 (957)
Q Consensus 160 ~~~~kL~elL~D~-D~sVv~AAv~vL~EI~~~---np~~~l~Lap~L~~iL 206 (957)
.||..+..+|.|. |.-|..+|+..++-+..+ +++.|+++.|.+|..|
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l 576 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL 576 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence 4566677788887 888888988888877654 4567888777765443
No 228
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.04 E-value=1.1e+03 Score=27.25 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=67.1
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHh----hhhHhhcc----cccCCCHHHHHHHHHHHhhhc-CcccHHH
Q 040316 275 VVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVL----ENKDFVIK----SLSDGDYNIKLESLRLLMSMV-SESNVAE 345 (957)
Q Consensus 275 v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~----~h~~~Il~----cL~D~D~sIR~~ALeLL~~Lv-ne~Nv~~ 345 (957)
+..+-.++....-++.-=|+.++..+..+|+.+++ .|.+.|+. +|..++.-+|+++|.||-.+. +..|..-
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~v 245 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNV 245 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHH
Confidence 33344555667778888889999999888886544 45555554 566787888999999987553 5666543
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcc
Q 040316 346 ISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDV 420 (957)
Q Consensus 346 IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~i 420 (957)
+ ..|+.+ ++ ++.+++.|++.....+.-|..+++. +.+.+|.-
T Consensus 246 m----~~yi~~-------------------------~~---nLkl~M~lL~d~sk~Iq~eAFhvFK-vFVANp~K 287 (335)
T PF08569_consen 246 M----TRYISS-------------------------PE---NLKLMMNLLRDKSKNIQFEAFHVFK-VFVANPNK 287 (335)
T ss_dssp H----HHHTT--------------------------HH---HHHHHHHHTT-S-HHHHHHHHHHHH-HHHH-SS-
T ss_pred H----HHHHCC-------------------------HH---HHHHHHHHhcCcchhhhHHHHHHHH-HHHhCCCC
Confidence 2 233221 12 5666666666655555555555444 44445543
No 229
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.70 E-value=1.1e+03 Score=31.60 Aligned_cols=226 Identities=18% Similarity=0.179 Sum_probs=108.8
Q ss_pred CHHHHHHHHHhhccCCc-------hhhHhhhHHHHHHhhhhhh--HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCC
Q 040316 122 NQFEVSLALECLSRIGN-------VDLARDLTPEVFTLLSSNA--VRVCFKRLVENLESSEPVILSAVVGVFCELCLKDP 192 (957)
Q Consensus 122 Np~vr~LALr~Ls~I~t-------peLa~~L~~~V~klL~~~A--vR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np 192 (957)
.+..|--||..|+.+-. -.|.-=+.|.|+|+|.+.+ +|.++=-|-.++.--|+++.+ ++.+.+.
T Consensus 483 SQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~-------dLvKe~g 555 (1387)
T KOG1517|consen 483 SQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA-------DLVKENG 555 (1387)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH-------HHHhccC
Confidence 35667778888888643 2455567899999999964 343211111222223344442 3444443
Q ss_pred CCccCchHHHHHHHhh--cCC-h--HHHHHHHHHHHhhccC--ChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhh--
Q 040316 193 RSYLPLAPEFYKILVD--SKN-N--WLLIKVLKIFAKLATL--EPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSS-- 263 (957)
Q Consensus 193 ~~~l~Lap~L~~iL~~--~~n-p--WlqIkILkLL~~l~p~--ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~-- 263 (957)
..|- ++.|.. ..+ + =|...+|-.|..=-+. +.-+...++......|.... ..++..=+- |+-+
T Consensus 556 ~~YF------~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~-icLG~L 627 (1387)
T KOG1517|consen 556 YKYF------LQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLC-ICLGRL 627 (1387)
T ss_pred ceeE------EEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHH-HHHHHH
Confidence 3321 011110 000 0 1122222222211111 12223345555555554421 234433221 1211
Q ss_pred cCCcHHH-----HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhh---hHhhcccccCCCHHHHHHHHHHHh
Q 040316 264 LSEYESA-----VKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLEN---KDFVIKSLSDGDYNIKLESLRLLM 335 (957)
Q Consensus 264 l~~~~~l-----i~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h---~~~Il~cL~D~D~sIR~~ALeLL~ 335 (957)
-.+.++. ...+..+|..+|.++-|++|-.|+-+|..++.....-|.+. .+.++. |++.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~-l~~~------------- 693 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEID-LDDE------------- 693 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhc-chhh-------------
Confidence 1222222 24577888888888899999999988888876432212221 111121 1111
Q ss_pred hhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhh
Q 040316 336 SMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRN 376 (957)
Q Consensus 336 ~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~ 376 (957)
.+.-++++......|+.-+.+..+-||.+++-++.+....+
T Consensus 694 ~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 694 RTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 01112222222246666777778888988888877666543
No 230
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=24.67 E-value=2.8e+02 Score=32.93 Aligned_cols=133 Identities=13% Similarity=0.243 Sum_probs=79.6
Q ss_pred CchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCch--hhHhhhHHHHHHhhhhhh-HH---HHHHHHHhhhcCCChhH
Q 040316 103 DTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNV--DLARDLTPEVFTLLSSNA-VR---VCFKRLVENLESSEPVI 176 (957)
Q Consensus 103 ~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tp--eLa~~L~~~V~klL~~~A-vR---~~~~kL~elL~D~D~sV 176 (957)
.+.++.-+++.+.||-+=..+.+||+ |+.-....++ -|.-.-..+|+..+...- .+ .+|..|..++.++...|
T Consensus 279 h~QLaYcivQfveKd~kl~~~VIrgl-LK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQV 357 (457)
T KOG2085|consen 279 HKQLAYCIVQFVEKDPKLTETVIRGL-LKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQV 357 (457)
T ss_pred ccccceeeeeeeccCccccHHHHHHH-HHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHH
Confidence 35666677777777777777777776 4554444443 233333455555555422 22 35677888999999999
Q ss_pred HHHHHHHH-----HHhhhcCCCCccCch-HHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHH
Q 040316 177 LSAVVGVF-----CELCLKDPRSYLPLA-PEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRV 236 (957)
Q Consensus 177 v~AAv~vL-----~EI~~~np~~~l~La-p~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kL 236 (957)
+--|+.+. ..+..+|.+.++|++ |.||+.-..-.|.=.+-.+++.+..+.-.++++.++.
T Consensus 358 AEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec 423 (457)
T KOG2085|consen 358 AERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEEC 423 (457)
T ss_pred HHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 98887654 455667777665543 6666655432222234456666666666666654443
No 231
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=24.64 E-value=5.5e+02 Score=30.19 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=20.9
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc
Q 040316 164 RLVENLESSEPVILSAVVGVFCELCLKDPRSY 195 (957)
Q Consensus 164 kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~ 195 (957)
.+.+--.---++|.+.|+.++..+..+.|..|
T Consensus 113 ~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~ 144 (379)
T PF06025_consen 113 HILENPEVFGPSVFSLAINIVSDFIHNEPTSF 144 (379)
T ss_pred HHHhCccccchHHHHHHHHHHHHHHhcCCchh
Confidence 33333334456788888888888887777643
No 232
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.38 E-value=1.8e+02 Score=30.88 Aligned_cols=81 Identities=12% Similarity=0.209 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh---HHHhhhhHhhccccc---CCCHHHHHHHHHHHhhhcCcccHHH
Q 040316 272 KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL---WAVLENKDFVIKSLS---DGDYNIKLESLRLLMSMVSESNVAE 345 (957)
Q Consensus 272 ~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p---~~v~~h~~~Il~cL~---D~D~sIR~~ALeLL~~Lvne~Nv~~ 345 (957)
.+.+-.|++-|++.++.+.-.+|.+|..|+..++ .++.+|...++..++ +....+- -.++- -...|+.+
T Consensus 79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~g-d~i~y----~~~~~~~d 153 (183)
T PF10274_consen 79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLG-DGIDY----RKRKNLGD 153 (183)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCC-ccccc----ccccchhH
Confidence 4566778888899999999999999999976664 678888888877665 1100000 01111 46688888
Q ss_pred HHHHHHHHhhhc
Q 040316 346 ISRVLINYALKS 357 (957)
Q Consensus 346 IV~ELl~yl~~s 357 (957)
+|.+-++-++..
T Consensus 154 lI~etL~~lE~~ 165 (183)
T PF10274_consen 154 LIQETLELLERN 165 (183)
T ss_pred HHHHHHHHHHHh
Confidence 888888887764
No 233
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=24.20 E-value=1.1e+03 Score=26.80 Aligned_cols=220 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcC-CCCccCchHH
Q 040316 123 QFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKD-PRSYLPLAPE 201 (957)
Q Consensus 123 p~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n-p~~~l~Lap~ 201 (957)
+.-|.+..+.|+.+....++..+...+...+.. +.+..++.+++.+|+.-+..- ...=..++..
T Consensus 1 ad~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~K---------------E~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~ 65 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPSSSLSSKIVQGLSPLLSK---------------ESNEAALSALLSALFKHLFFLSSELPKKVVDA 65 (339)
T ss_pred CcHHHHHHHHHHhCCCcchHHHHHHHHHHHHHh---------------hcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHH
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhhc----cCChHHHhHHHHHHHHHh---hcCCcchHH---HHHHHHHHh----hcCCc
Q 040316 202 FYKILVDSKNNWLLIKVLKIFAKLA----TLEPRLAKRVVEPICEFM---RRTEAKSLL---FECIRTVLS----SLSEY 267 (957)
Q Consensus 202 L~~iL~~~~npWlqIkILkLL~~l~----p~ep~L~~kLl~~L~~lL---~~t~a~SVL---yE~I~~Ii~----~l~~~ 267 (957)
+.+-|.+...+--.+.++.+...+. .........+++.+.+.+ ..++..+.. ..|+-+++. ..+..
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~ 145 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKI 145 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhh
Q ss_pred HHHHHHHHHHHH-----------HhhcC-CCchHHHHHHHHHHHHhhhChHHH-----hhhhHhhcccccCC--CHHHHH
Q 040316 268 ESAVKLAVVKVR-----------EFLVD-DDPNLKYLGLQALSIIAPKHLWAV-----LENKDFVIKSLSDG--DYNIKL 328 (957)
Q Consensus 268 ~~li~l~v~~L~-----------~fL~s-sDpNlrYvaL~~L~~Iv~~~p~~v-----~~h~~~Il~cL~D~--D~sIR~ 328 (957)
+. -......+. ++++. .+.+-....++++..+...++... ...-..|+.++-.+ ...+|+
T Consensus 146 ~~-~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~ 224 (339)
T PF12074_consen 146 DS-KNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRR 224 (339)
T ss_pred hh-hhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q ss_pred HHHHHHhhhcCcccH---HHHHHHHHHHhhhcC
Q 040316 329 ESLRLLMSMVSESNV---AEISRVLINYALKSD 358 (957)
Q Consensus 329 ~ALeLL~~Lvne~Nv---~~IV~ELl~yl~~sD 358 (957)
.|++++..+....-- ..|+.+|-+++...+
T Consensus 225 ~A~~~l~~l~~~~~~~l~~~li~~l~~~l~~~~ 257 (339)
T PF12074_consen 225 AALSALKKLYASNPELLSKSLISGLWKWLSSSE 257 (339)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcc
No 234
>PF07778 CENP-I: Mis6 ; InterPro: IPR012485 Centromere protein Cenp-I (also known as Mis6) is an essential centromere connector protein acting during G1-S phase of the cell cycle. Mis6 is thought to be required for recruiting Cenp-A, the centromere- specific histone H3 variant; an important event for centromere function and chromosome segregation during mitosis [, ].
Probab=24.03 E-value=7.4e+02 Score=30.47 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHHHHhh--hChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHH-HHHHHHHHhh
Q 040316 285 DDPNLKYLGLQALSIIAP--KHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAE-ISRVLINYAL 355 (957)
Q Consensus 285 sDpNlrYvaL~~L~~Iv~--~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~-IV~ELl~yl~ 355 (957)
..++++-.-|+-|..+.. .++..+...+..+|..|++ .++|.-.-.||+-++..+|++. =|+.|++-..
T Consensus 148 ~s~~~Q~~llrWLi~v~~~id~~~~L~~~Y~vlF~~L~~--~~lrp~~chLL~llTrr~~VkpfRi~~Ll~L~~ 219 (511)
T PF07778_consen 148 PSPSTQALLLRWLIAVYDFIDDKDVLSKLYGVLFNLLDY--ESLRPYLCHLLYLLTRREHVKPFRIQKLLDLQN 219 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccccCchHHHHHHHHHHh
Confidence 345555555555554432 3467788888888888875 5888888899999988888765 3445544433
No 235
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=3.3e+02 Score=35.55 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=44.2
Q ss_pred hhHhhhHHHHHHhhhhhh----------------------------HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcC
Q 040316 140 DLARDLTPEVFTLLSSNA----------------------------VRVCFKRLVENLESSEPVILSAVVGVFCELCLKD 191 (957)
Q Consensus 140 eLa~~L~~~V~klL~~~A----------------------------vR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n 191 (957)
+|+.++.....++|+|+. +...||-+.+++.++||.++..|+.++..++...
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 478888888888888842 2234788999999999999999999999999876
Q ss_pred CC
Q 040316 192 PR 193 (957)
Q Consensus 192 p~ 193 (957)
.+
T Consensus 879 gD 880 (1014)
T KOG4524|consen 879 GD 880 (1014)
T ss_pred hh
Confidence 54
No 236
>PTZ00479 RAP Superfamily; Provisional
Probab=23.12 E-value=1.2e+03 Score=28.12 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=59.9
Q ss_pred CChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhc
Q 040316 172 SEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRR 246 (957)
Q Consensus 172 ~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~ 246 (957)
-|+.-++|+|.---.+-+++.++|..+.+.++.+..+ ..|.....|+=-|+++--.++.+..++.+.+...+.+
T Consensus 58 md~~~is~~vqkaat~rkhD~~Lw~~f~~Rilel~dt-L~Pqqig~Ilyg~gKsr~~~~efy~~~~~~v~~~L~~ 131 (435)
T PTZ00479 58 MDGWYLSACVQKAATLRKHDLELWHGFTNRLLELSDT-LTPQQIGYIFYGYGKSRFLNPEFYEKMLKFVQPLLPN 131 (435)
T ss_pred cCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 4778888888888888888888888888888877654 7888888999889888777888888888877776643
No 237
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=22.56 E-value=1.2e+03 Score=27.05 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC---hHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHH
Q 040316 273 LAVVKVREFLVDDDPNLKYLGLQALSIIAPKH---LWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRV 349 (957)
Q Consensus 273 l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~---p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~E 349 (957)
+-..++...+.+++...|-.+|..|..=...+ |.++.---+.+-..+++ |...-...+.++.+|....|+.-
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~l---- 252 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHL---- 252 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCch----
Confidence 34455555555566666777777654322222 33333222333334443 45666666777777776666521
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHHhhh-hcccc-cchHHHHHHHHHhhccCCcchHHHHHHHHHHHHH----hcCcchHH
Q 040316 350 LINYALKSDPEFCNQILGSILSTCCRN-LYEVI-VDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAM----RVKDVRPA 423 (957)
Q Consensus 350 Ll~yl~~sD~~~r~elI~aI~~ic~~~-~y~~~-~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~----rvp~ir~~ 423 (957)
.. |-..++..++..+... .-... .+..|.+.-. ....+..|+. .++.+++.
T Consensus 253 -e~--------Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~--------------AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 253 -EP--------YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDY--------------AARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred -HH--------hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHH--------------HHHHHHHHHHHcCCCCCcHHHH
Confidence 11 2233444443211111 00011 3457777633 2233333333 46778999
Q ss_pred HHHHHHHHhcCCc
Q 040316 424 LVHVCRNLLIDPA 436 (957)
Q Consensus 424 av~~l~~lL~d~~ 436 (957)
+++.+.+.+.|+.
T Consensus 310 i~~tl~k~l~d~~ 322 (343)
T cd08050 310 ITRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHHHcCCC
Confidence 9988888887753
No 238
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=22.47 E-value=1e+02 Score=22.92 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.9
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELC 188 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~ 188 (957)
+++.|.++|...++.++..|+.+|..|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4677888888889999999999998775
No 239
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=22.43 E-value=72 Score=32.60 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=24.1
Q ss_pred CCCCCccccccccccccccccCCCCCCchhhhhh
Q 040316 886 HVNTSSRRSKHRSHGKERRQKGQGKDGEEKEDNG 919 (957)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (957)
+-.++||+++-++||.|+.+++.+.-+.--|+++
T Consensus 61 ~K~assR~sk~k~~gQektk~treNnsKK~~e~k 94 (150)
T PF15442_consen 61 PKAASSRPSKTKGHGQEKTKRTRENNSKKAEERK 94 (150)
T ss_pred CcCCccCcccccccccccCCcCcccccccccccc
Confidence 5567899999999999998876443333334443
No 240
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=21.96 E-value=9.8e+02 Score=31.17 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=69.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhChHHHhhhhH----hhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcC
Q 040316 283 VDDDPNLKYLGLQALSIIAPKHLWAVLENKD----FVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSD 358 (957)
Q Consensus 283 ~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~----~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD 358 (957)
.+..-|+--+++..|..|+..-+..+..|.. .|+.++.|.-...|-.++..+-.+++...+..+.+.++.++..-.
T Consensus 305 kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~kn 384 (815)
T KOG1820|consen 305 KDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKN 384 (815)
T ss_pred cCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 3455566777888888898877766777664 456677777788888999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 040316 359 PEFCNQILGSI 369 (957)
Q Consensus 359 ~~~r~elI~aI 369 (957)
+.++.++..-.
T Consensus 385 p~~k~~~~~~l 395 (815)
T KOG1820|consen 385 PQIKGECLLLL 395 (815)
T ss_pred hhhHHHHHHHH
Confidence 98888866544
No 241
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.87 E-value=2.4e+02 Score=32.98 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred HHh--hhhHHHHHHHH---hhc--ChHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CCCCcchhHHHHHH-
Q 040316 9 TLF--QRDLDDLIKGI---RQQ--QIKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSL-HGADMSFAAFHAVE- 79 (957)
Q Consensus 9 ~~f--~rsL~dfIr~I---R~~--k~~E~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML-~G~DmS~~~f~VVe- 79 (957)
.+| +..|..+|.+| .-+ ..+|.-+=..-.+-||+.+...|...++.|-.-++.--+- .+..+...++..|.
T Consensus 177 ~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~ 256 (370)
T PF08506_consen 177 NLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQ 256 (370)
T ss_dssp TTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356 34677888875 112 2334444334456699999887776666555555541110 13334344444443
Q ss_pred hhc------CCCccchhhhHHHH--HhhcCCC------------chHHHHHHHHHHHHhc---CCCHHHHHHHHHhhccC
Q 040316 80 VMS------SPQFFYKKIGYHAV--TQSFNDD------------TPVILLITNQLRKDLN---SSNQFEVSLALECLSRI 136 (957)
Q Consensus 80 lms------S~~~~~KRlGYLaa--s~~~~~~------------~dlllLatNtLkKDL~---s~Np~vr~LALr~Ls~I 136 (957)
+++ +.+.. ++=|.+++ +...... -++.-...+.+.-||+ +..|..++-|++++..+
T Consensus 257 ~l~~y~~~~~~~w~-~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~F 335 (370)
T PF08506_consen 257 LLQQYASNPSNNWR-SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTF 335 (370)
T ss_dssp HHHHHHH-TTT-HH-HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHH
T ss_pred HHHHHhhCCcccHH-HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHH
Confidence 333 34444 33333333 3322221 1566677788888888 67799999999999987
Q ss_pred Cc---hhhHhhhHHHHHHhhhh
Q 040316 137 GN---VDLARDLTPEVFTLLSS 155 (957)
Q Consensus 137 ~t---peLa~~L~~~V~klL~~ 155 (957)
++ ++....+.|.+.++|.+
T Consensus 336 r~~l~~~~l~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 336 RNQLPKEQLLQIFPLLVNHLQS 357 (370)
T ss_dssp GGGS-HHHHHHHHHHHHHHTTS
T ss_pred HhhCCHHHHHHHHHHHHHHhCC
Confidence 76 44444455555554444
No 242
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=21.74 E-value=1.1e+02 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcC
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKD 191 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~n 191 (957)
++-|...|.|.++.|+.+|+.+|+|.|...
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 355778899999999999999999999876
No 243
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.10 E-value=1.4e+03 Score=26.84 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=45.3
Q ss_pred CCchHHHHHHHHHHHHhhhCh-------------HHHhhhhHhhccccc---CCCHHHHHHHHHHHhhhc---CcccHHH
Q 040316 285 DDPNLKYLGLQALSIIAPKHL-------------WAVLENKDFVIKSLS---DGDYNIKLESLRLLMSMV---SESNVAE 345 (957)
Q Consensus 285 sDpNlrYvaL~~L~~Iv~~~p-------------~~v~~h~~~Il~cL~---D~D~sIR~~ALeLL~~Lv---ne~Nv~~ 345 (957)
.+.--|-.||..+..|+.+.- ++.+=+...|+.-|. +.-+.+|.+|+..++..- +++.+..
T Consensus 267 ~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~ 346 (370)
T PF08506_consen 267 NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQ 346 (370)
T ss_dssp T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHH
Confidence 455678888988888876431 112222223332233 344678999999988654 4566777
Q ss_pred HHHHHHHHhhhcChH
Q 040316 346 ISRVLINYALKSDPE 360 (957)
Q Consensus 346 IV~ELl~yl~~sD~~ 360 (957)
++.-+..++...+.-
T Consensus 347 ~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYV 361 (370)
T ss_dssp HHHHHHHHTTSS-HH
T ss_pred HHHHHHHHhCCCCcc
Confidence 888888888866543
No 244
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.13 E-value=8.7e+02 Score=27.07 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH----------HHhhhhHhhccccc--------CCCHHHHHHHH
Q 040316 270 AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW----------AVLENKDFVIKSLS--------DGDYNIKLESL 331 (957)
Q Consensus 270 li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~----------~v~~h~~~Il~cL~--------D~D~sIR~~AL 331 (957)
...+++-.+-.++.+.++.+|..|+..+..++..-|. +++-..+.+..|+. +....+=..+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 3456677777788888999999999999998874432 23334555565655 33344444555
Q ss_pred HHHhhh
Q 040316 332 RLLMSM 337 (957)
Q Consensus 332 eLL~~L 337 (957)
..|..+
T Consensus 196 ~~L~~L 201 (282)
T PF10521_consen 196 PALLSL 201 (282)
T ss_pred HHHHHH
Confidence 555555
No 245
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.13 E-value=8.5e+02 Score=24.09 Aligned_cols=41 Identities=24% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhcc
Q 040316 95 AVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSR 135 (957)
Q Consensus 95 aas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~ 135 (957)
.++-..+.+++-.--+...|+|-|.++||.++-+||..|-.
T Consensus 28 ~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~ 68 (140)
T PF00790_consen 28 EICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDA 68 (140)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33444445566677888999999999999999999987643
Done!