Query 040316
Match_columns 957
No_of_seqs 300 out of 1297
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 3.9E-81 1.3E-85 749.6 43.5 476 10-497 8-551 (621)
2 1w63_A Adapter-related protein 100.0 1.1E-75 3.6E-80 701.6 41.9 474 11-497 8-541 (618)
3 2vgl_B AP-2 complex subunit be 100.0 1.3E-64 4.5E-69 602.0 44.3 449 35-497 13-494 (591)
4 3tjz_B Coatomer subunit gamma; 100.0 2.4E-44 8.1E-49 403.1 9.8 297 36-340 27-354 (355)
5 1w63_A Adapter-related protein 99.3 3.4E-10 1.2E-14 135.4 27.3 416 80-533 115-593 (618)
6 4fdd_A Transportin-1; heat rep 99.3 6.6E-09 2.3E-13 127.8 36.4 394 81-498 22-473 (852)
7 1b3u_A Protein (protein phosph 99.2 7.2E-09 2.5E-13 120.1 32.3 335 37-373 12-391 (588)
8 2vgl_B AP-2 complex subunit be 99.2 2.8E-09 9.6E-14 126.7 25.5 377 37-428 88-506 (591)
9 2jdq_A Importin alpha-1 subuni 99.2 1.3E-08 4.5E-13 114.1 29.6 293 111-415 66-390 (450)
10 1b3u_A Protein (protein phosph 99.1 2.7E-08 9.3E-13 115.2 32.6 433 45-494 97-585 (588)
11 4b8j_A Importin subunit alpha- 99.1 1.5E-08 5E-13 117.6 28.0 332 72-415 74-443 (528)
12 1wa5_B Importin alpha subunit; 99.1 3.3E-08 1.1E-12 114.9 30.0 332 72-416 87-458 (530)
13 2jdq_A Importin alpha-1 subuni 99.1 1.6E-07 5.3E-12 105.4 33.7 325 37-375 22-391 (450)
14 4fdd_A Transportin-1; heat rep 99.1 2.4E-06 8.2E-11 105.1 46.6 404 84-491 333-819 (852)
15 1wa5_B Importin alpha subunit; 99.0 1.1E-07 3.6E-12 110.7 31.2 328 33-375 85-458 (530)
16 1oyz_A Hypothetical protein YI 99.0 2.7E-08 9.2E-13 105.8 21.2 240 110-397 24-263 (280)
17 4b8j_A Importin subunit alpha- 99.0 8.6E-07 2.9E-11 102.7 35.4 327 36-375 75-444 (528)
18 2bpt_A Importin beta-1 subunit 98.9 7.7E-07 2.6E-11 108.2 34.2 323 163-497 98-483 (861)
19 1ibr_B P95, importin beta-1 su 98.9 1.7E-07 6E-12 105.0 25.3 284 163-461 93-439 (462)
20 2z6g_A B-catenin; FULL-length, 98.9 8.3E-07 2.9E-11 109.0 32.0 372 73-456 116-556 (780)
21 1qgr_A Protein (importin beta 98.9 7.5E-07 2.6E-11 108.4 31.1 407 76-497 5-480 (876)
22 2z6h_A Catenin beta-1, beta-ca 98.8 2.4E-06 8.2E-11 102.1 33.9 317 121-456 69-420 (644)
23 3ul1_B Importin subunit alpha- 98.8 3.2E-06 1.1E-10 98.6 33.8 333 70-414 55-429 (510)
24 1u6g_C TIP120 protein, CAND1; 98.8 3.1E-06 1.1E-10 108.2 36.7 263 36-305 7-287 (1230)
25 1jdh_A Beta-catenin; beta-cate 98.8 3.9E-06 1.3E-10 96.2 33.4 360 74-456 19-423 (529)
26 2db0_A 253AA long hypothetical 98.8 5.8E-07 2E-11 91.1 21.1 206 161-373 33-245 (253)
27 3now_A UNC-45 protein, SD10334 98.8 6.7E-06 2.3E-10 101.1 34.9 337 32-374 244-694 (810)
28 2bpt_A Importin beta-1 subunit 98.7 3.3E-05 1.1E-09 93.8 39.8 337 70-418 132-532 (861)
29 1qgr_A Protein (importin beta 98.7 2.5E-05 8.7E-10 95.0 38.5 338 69-418 125-540 (876)
30 3ul1_B Importin subunit alpha- 98.7 3.9E-06 1.3E-10 97.8 29.3 325 162-497 59-431 (510)
31 2vgl_A Adaptor protein complex 98.7 7.4E-06 2.5E-10 98.3 32.1 353 88-457 59-472 (621)
32 3tpo_A Importin subunit alpha- 98.7 1.2E-05 4E-10 94.1 32.9 323 164-497 80-450 (529)
33 3tpo_A Importin subunit alpha- 98.7 1.4E-05 4.6E-10 93.5 32.3 293 71-375 75-407 (529)
34 1jdh_A Beta-catenin; beta-cate 98.7 9.8E-06 3.3E-10 92.9 29.8 431 34-494 16-528 (529)
35 4hxt_A De novo protein OR329; 98.6 4.3E-06 1.5E-10 85.9 23.4 212 162-375 4-242 (252)
36 2z6h_A Catenin beta-1, beta-ca 98.6 6.1E-05 2.1E-09 90.0 34.0 433 36-496 15-527 (644)
37 1oyz_A Hypothetical protein YI 98.5 7.2E-06 2.5E-10 86.9 21.8 249 75-369 26-277 (280)
38 4db8_A Armadillo-repeat protei 98.5 3.3E-06 1.1E-10 87.5 18.4 210 162-373 14-250 (252)
39 4hxt_A De novo protein OR329; 98.5 1.2E-05 4.3E-10 82.4 22.5 217 111-340 4-242 (252)
40 2z6g_A B-catenin; FULL-length, 98.5 1.1E-05 3.9E-10 99.0 25.4 361 111-496 117-518 (780)
41 1u6g_C TIP120 protein, CAND1; 98.4 0.00022 7.6E-09 91.2 36.7 452 36-498 87-681 (1230)
42 4db8_A Armadillo-repeat protei 98.4 2.2E-05 7.6E-10 81.3 20.5 218 111-339 14-251 (252)
43 3ltm_A Alpha-REP4; protein eng 98.3 2E-05 6.7E-10 80.0 17.8 183 111-374 21-203 (211)
44 3b2a_A TON_1937, putative unch 98.3 3.8E-06 1.3E-10 88.4 11.5 189 162-354 35-233 (265)
45 3ltm_A Alpha-REP4; protein eng 98.2 6.7E-05 2.3E-09 76.0 19.9 90 275-374 83-172 (211)
46 3ltj_A Alpharep-4; protein eng 98.2 8.6E-05 2.9E-09 74.6 20.2 182 161-372 15-196 (201)
47 4db6_A Armadillo repeat protei 98.2 9.7E-05 3.3E-09 74.4 19.8 175 162-338 14-208 (210)
48 3ltj_A Alpharep-4; protein eng 98.2 6.6E-05 2.3E-09 75.4 18.3 183 110-338 15-197 (201)
49 3now_A UNC-45 protein, SD10334 98.1 0.003 1E-07 77.8 35.0 334 37-374 332-737 (810)
50 1ibr_B P95, importin beta-1 su 98.0 0.00079 2.7E-08 75.2 25.2 213 161-374 129-395 (462)
51 4db6_A Armadillo repeat protei 97.8 0.0011 3.7E-08 66.6 19.8 174 198-373 13-208 (210)
52 1xm9_A Plakophilin 1; armadill 97.8 0.0061 2.1E-07 69.9 26.8 329 112-460 5-450 (457)
53 3l6x_A Catenin delta-1; cateni 97.6 0.024 8.1E-07 67.6 30.1 328 112-459 51-476 (584)
54 1xm9_A Plakophilin 1; armadill 97.6 0.011 3.8E-07 67.8 25.0 293 162-458 4-405 (457)
55 3tjz_B Coatomer subunit gamma; 97.5 0.00071 2.4E-08 75.9 13.6 238 238-494 107-351 (355)
56 3l6x_A Catenin delta-1; cateni 97.3 0.047 1.6E-06 65.0 27.3 294 162-458 50-431 (584)
57 1wa5_C Importin alpha RE-expor 97.2 0.12 4.2E-06 64.5 31.1 52 289-340 262-322 (960)
58 3nmz_A APC variant protein; pr 97.2 0.048 1.6E-06 63.1 24.2 294 161-458 71-449 (458)
59 3nmw_A APC variant protein; AR 97.1 0.012 4E-07 65.9 18.2 244 120-375 43-335 (354)
60 2qk2_A LP04448P; mini spindles 97.1 0.0083 2.8E-07 62.3 15.8 103 273-375 56-163 (242)
61 3opb_A SWI5-dependent HO expre 97.1 0.087 3E-06 64.4 26.3 449 34-494 131-681 (778)
62 3opb_A SWI5-dependent HO expre 97.1 0.12 4E-06 63.3 27.4 212 161-374 377-683 (778)
63 2qk2_A LP04448P; mini spindles 97.1 0.032 1.1E-06 57.8 19.6 104 270-375 95-206 (242)
64 2qk1_A Protein STU2; STU2P, XM 97.0 0.0057 1.9E-07 64.9 13.8 193 78-314 22-233 (249)
65 2x1g_F Cadmus; transport prote 97.0 0.23 7.8E-06 61.8 29.4 161 253-418 441-618 (971)
66 1wa5_C Importin alpha RE-expor 96.8 0.24 8.3E-06 61.8 28.1 207 83-303 416-671 (960)
67 2qk1_A Protein STU2; STU2P, XM 96.8 0.034 1.2E-06 58.8 17.4 181 114-337 21-218 (249)
68 2x19_B Importin-13; nuclear tr 96.8 0.16 5.6E-06 62.9 25.7 53 443-498 502-558 (963)
69 2db0_A 253AA long hypothetical 96.8 0.074 2.5E-06 54.4 18.1 193 123-334 46-241 (253)
70 1xqr_A HSPBP1 protein; armadil 96.7 0.057 2E-06 58.8 18.4 147 162-309 83-245 (296)
71 4ady_A RPN2, 26S proteasome re 96.5 2.6 8.8E-05 52.8 33.5 250 111-376 394-678 (963)
72 3nmz_A APC variant protein; pr 96.5 0.084 2.9E-06 61.1 19.3 203 172-375 212-451 (458)
73 2x1g_F Cadmus; transport prote 96.4 0.1 3.5E-06 65.0 20.6 52 443-498 519-574 (971)
74 3nmw_A APC variant protein; AR 96.4 0.13 4.4E-06 57.4 19.4 212 121-340 96-335 (354)
75 1xqr_A HSPBP1 protein; armadil 96.3 0.17 6E-06 55.0 19.4 141 199-340 83-239 (296)
76 1te4_A Conserved protein MTH18 96.1 0.0027 9.1E-08 60.0 3.2 105 274-399 13-117 (131)
77 3m1i_C Exportin-1; heat repeat 96.0 0.85 2.9E-05 57.5 26.5 55 444-499 513-572 (1049)
78 3ibv_A Exportin-T; karyopherin 96.0 3.1 0.00011 52.4 31.2 58 441-498 506-568 (980)
79 3b2a_A TON_1937, putative unch 95.9 0.27 9.3E-06 52.0 17.2 164 209-375 44-219 (265)
80 4ady_A RPN2, 26S proteasome re 95.8 1.6 5.3E-05 54.7 26.6 276 83-375 406-722 (963)
81 1te4_A Conserved protein MTH18 95.0 0.036 1.2E-06 52.1 6.6 86 275-370 44-129 (131)
82 1ho8_A Vacuolar ATP synthase s 95.0 7.2 0.00025 45.2 29.3 167 324-497 286-477 (480)
83 3u0r_A Apoptosis inhibitor 5; 94.5 0.77 2.6E-05 53.1 16.9 126 284-416 39-164 (507)
84 4ffb_C Protein STU2; tubulin f 94.4 0.2 6.8E-06 53.2 11.4 110 77-190 14-133 (278)
85 2of3_A ZYG-9; multifunctional 93.5 5.3 0.00018 42.8 20.2 170 165-337 51-234 (266)
86 2x19_B Importin-13; nuclear tr 93.3 20 0.00069 44.1 37.7 317 82-417 459-848 (963)
87 3u0r_A Apoptosis inhibitor 5; 93.2 16 0.00054 42.4 27.2 261 74-357 31-324 (507)
88 2of3_A ZYG-9; multifunctional 92.3 1.6 5.6E-05 46.8 14.2 148 281-434 54-218 (266)
89 4hat_C Exportin-1; heat repeat 92.2 9.4 0.00032 48.3 23.1 87 105-191 447-571 (1023)
90 4ffb_C Protein STU2; tubulin f 92.1 2.3 8E-05 44.8 15.2 64 274-337 140-210 (278)
91 3grl_A General vesicular trans 92.0 2 6.8E-05 51.5 15.6 111 311-422 123-248 (651)
92 3tt9_A Plakophilin-2; cell adh 91.1 3.4 0.00012 43.3 14.8 68 162-230 10-84 (233)
93 4hat_C Exportin-1; heat repeat 88.4 57 0.0019 41.3 25.4 149 156-305 447-621 (1023)
94 3gjx_A Exportin-1; transport, 88.1 40 0.0014 42.9 23.7 33 163-195 569-601 (1073)
95 3a6p_A Exportin-5; exportin-5, 88.0 61 0.0021 41.6 25.8 183 172-359 108-365 (1204)
96 3grl_A General vesicular trans 85.9 54 0.0019 39.4 21.7 102 274-375 123-242 (651)
97 3m1i_C Exportin-1; heat repeat 85.8 82 0.0028 39.5 30.9 89 252-340 775-879 (1049)
98 2iw3_A Elongation factor 3A; a 85.2 6.5 0.00022 49.5 14.1 240 110-370 55-320 (986)
99 3tt9_A Plakophilin-2; cell adh 80.3 11 0.00036 39.6 11.4 100 275-374 10-124 (233)
100 3ldz_A STAM-1, signal transduc 78.8 4.7 0.00016 38.9 7.6 57 248-308 21-77 (140)
101 1lsh_A Lipovitellin (LV-1N, LV 78.5 1.4E+02 0.0047 37.8 22.9 84 287-374 492-576 (1056)
102 3o2t_A Symplekin; heat repeat, 77.5 99 0.0034 34.8 20.7 128 50-188 40-182 (386)
103 1mhq_A ADP-ribosylation factor 74.8 8.2 0.00028 37.7 8.1 86 248-337 17-114 (148)
104 3gjx_A Exportin-1; transport, 73.8 2E+02 0.0069 36.6 34.2 52 449-501 545-600 (1073)
105 4gmo_A Putative uncharacterize 73.0 32 0.0011 41.3 14.4 69 112-191 38-107 (684)
106 3gs3_A Symplekin, LD45768P; he 72.5 1E+02 0.0035 32.6 21.5 144 34-188 14-172 (257)
107 3g2s_A C-terminal fragment of 71.9 9.9 0.00034 37.2 7.9 86 248-337 27-124 (149)
108 3dad_A FH1/FH2 domain-containi 71.6 31 0.0011 38.2 12.6 74 274-351 161-245 (339)
109 1x5b_A Signal transducing adap 71.5 6.3 0.00022 39.1 6.5 57 248-308 31-87 (163)
110 3l9t_A Putative uncharacterize 69.7 75 0.0026 33.5 14.4 72 346-419 140-211 (240)
111 3gs3_A Symplekin, LD45768P; he 68.8 1.1E+02 0.0037 32.4 15.8 98 271-369 14-114 (257)
112 1juq_A ADP-ribosylation factor 68.8 11 0.00037 37.7 7.5 86 248-337 29-126 (171)
113 3o2t_A Symplekin; heat repeat, 62.1 1.5E+02 0.005 33.4 15.9 82 288-369 40-124 (386)
114 1lrv_A LRV, leucine-rich repea 61.8 9 0.00031 40.4 5.7 67 278-369 175-241 (244)
115 2npp_B PP2A, B subunit, serine 55.3 2.8E+02 0.0095 31.8 16.9 191 161-356 163-376 (449)
116 1vsy_5 Proteasome activator BL 54.7 1.2E+02 0.0041 38.3 15.0 150 268-419 796-970 (997)
117 1elk_A Target of MYB1; superhe 54.1 25 0.00085 34.5 7.0 86 248-337 32-128 (157)
118 1upk_A MO25 protein; transfera 53.1 2.7E+02 0.0092 30.8 25.2 150 31-193 41-197 (341)
119 1dvp_A HRS, hepatocyte growth 53.0 23 0.00078 36.5 6.9 57 248-308 21-77 (220)
120 4gmo_A Putative uncharacterize 52.8 51 0.0017 39.5 10.9 64 277-341 38-107 (684)
121 3ibv_A Exportin-T; karyopherin 50.6 3.1E+02 0.011 34.4 17.8 92 105-207 490-584 (980)
122 1vsy_4 Proteasome activator BL 45.6 5.1E+02 0.017 31.8 21.5 186 169-357 348-570 (799)
123 3fga_B Serine/threonine-protei 45.5 3.8E+02 0.013 30.3 17.2 169 162-334 131-317 (403)
124 3fga_B Serine/threonine-protei 45.4 2.5E+02 0.0085 31.8 14.2 107 104-214 232-350 (403)
125 3zyq_A Hepatocyte growth facto 44.6 26 0.00089 36.4 5.7 55 248-306 24-78 (226)
126 2f31_A Diaphanous protein homo 43.0 67 0.0023 33.2 8.6 41 312-352 98-142 (233)
127 3l9t_A Putative uncharacterize 40.6 3.5E+02 0.012 28.4 14.7 139 237-392 73-218 (240)
128 1x5b_A Signal transducing adap 39.7 1.1E+02 0.0039 29.9 9.3 38 158-195 50-87 (163)
129 1ho8_A Vacuolar ATP synthase s 38.4 30 0.001 40.1 5.3 65 274-338 396-475 (480)
130 3oc3_A Helicase MOT1, MOT1; re 36.1 1.6E+02 0.0056 35.1 10.9 219 162-411 176-400 (800)
131 2npp_B PP2A, B subunit, serine 36.1 2.7E+02 0.0093 31.9 12.8 128 104-235 265-407 (449)
132 3rru_A TOM1L1 protein; structu 32.9 95 0.0033 30.3 7.3 88 248-339 32-130 (152)
133 2jak_A Serine/threonine-protei 31.4 4.1E+02 0.014 29.9 13.0 168 161-334 175-362 (392)
134 3s4w_B Protein FACD2, fanconi 29.4 1.1E+03 0.037 30.8 22.2 112 240-356 162-273 (1323)
135 2b6c_A Hypothetical protein EF 28.4 3.6E+02 0.012 27.3 11.2 59 315-374 129-187 (220)
136 1vdy_A Hypothetical protein (R 28.4 96 0.0033 30.0 6.3 47 306-353 45-91 (140)
137 2bnx_A Diaphanous protein homo 26.5 1.5E+02 0.0051 33.1 8.5 42 312-353 102-147 (386)
138 3eg5_B Protein diaphanous homo 26.5 1.7E+02 0.0056 32.7 8.8 42 312-353 164-209 (383)
139 1vdy_A Hypothetical protein (R 26.4 4.2E+02 0.015 25.4 10.5 72 271-342 47-133 (140)
140 3ldz_A STAM-1, signal transduc 24.0 4.6E+02 0.016 24.8 10.8 77 297-373 29-113 (140)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=3.9e-81 Score=749.55 Aligned_cols=476 Identities=24% Similarity=0.385 Sum_probs=432.0
Q ss_pred HhhhhHHHHHHHHhhcC--hHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCC
Q 040316 10 LFQRDLDDLIKGIRQQQ--IKESLFISKAIEEIRREIKS---TDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSP 84 (957)
Q Consensus 10 ~f~rsL~dfIr~IR~~k--~~E~~~I~~elaEIR~eL~S---~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~ 84 (957)
.=+|+|++||++||+|+ .+|+++|++|+++||++|++ .+.+.|+++|+|+||++|+ |||++|+||+|+++|+|+
T Consensus 8 ~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~-G~d~s~~~~~vvkl~~s~ 86 (621)
T 2vgl_A 8 EGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL-GHDIDFGHMEAVNLLSSN 86 (621)
T ss_dssp -CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHH-SCCCCSCHHHHHHGGGCS
T ss_pred CCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-CCCCchhHHHHHHHhcCC
Confidence 34599999999999997 57999999999999999995 3678999999999999886 999999999999999999
Q ss_pred CccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhh--hh--hhHH-
Q 040316 85 QFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLL--SS--NAVR- 159 (957)
Q Consensus 85 ~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL--~~--~AvR- 159 (957)
++..||+||||++++++.++|+++|+||+|+|||+|+||++||+|||+||+|++|++++++.++|.++| .| +.||
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK 166 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQ 166 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 66 2333
Q ss_pred --------------------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh-----cC----
Q 040316 160 --------------------VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD-----SK---- 210 (957)
Q Consensus 160 --------------------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~-----~~---- 210 (957)
.+++++.++|.|+|++|+.+|++++++|++.+|+.|.+++|.++++|.+ ..
T Consensus 167 ~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 246 (621)
T 2vgl_A 167 SAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQD 246 (621)
T ss_dssp HHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCST
T ss_pred HHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccc
Confidence 1356788899999999999999999999999999999999998887753 12
Q ss_pred -------ChHHHHHHHHHHHhhccC-ChHHHhHHHHHHHHHhhc-------------CCcchHHHHHHHHHHhhcCCcHH
Q 040316 211 -------NNWLLIKVLKIFAKLATL-EPRLAKRVVEPICEFMRR-------------TEAKSLLFECIRTVLSSLSEYES 269 (957)
Q Consensus 211 -------npWlqIkILkLL~~l~p~-ep~L~~kLl~~L~~lL~~-------------t~a~SVLyE~I~~Ii~~l~~~~~ 269 (957)
+||+|+++|++|+.|++. +|+..+.+.+.+..++++ |.++||+|||+++|+... ..++
T Consensus 247 ~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~ 325 (621)
T 2vgl_A 247 YTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPN 325 (621)
T ss_dssp TEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHH
Confidence 799999999999999986 588888888888777642 225699999999999864 4578
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh--HHHhhhhHhhccccc-CCCHHHHHHHHHHHhhhcCcccHHHH
Q 040316 270 AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL--WAVLENKDFVIKSLS-DGDYNIKLESLRLLMSMVSESNVAEI 346 (957)
Q Consensus 270 li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p--~~v~~h~~~Il~cL~-D~D~sIR~~ALeLL~~Lvne~Nv~~I 346 (957)
+++.|++.|++||.++++|+||+||.+|.+|+..+| .+|+.|+..|+.||+ |+|++||++||++|+.|+|++|+..|
T Consensus 326 ~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~I 405 (621)
T 2vgl_A 326 LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQI 405 (621)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHH
Confidence 889999999999999999999999999999999986 799999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHH
Q 040316 347 SRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVH 426 (957)
Q Consensus 347 V~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~ 426 (957)
++||++|+...|.+|+.+++.+|+.+|.+ | +++++||+++|++++...|+++.+++|.++++++.++|+.|.+++.
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~la~k--~--~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~ 481 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAILAEK--Y--AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAK 481 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHH--H--CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh--c--CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHH
Confidence 99999999999999999999999988875 3 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCC-----HHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 427 VCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRN-----PFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 427 ~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~-----p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
.+++.+.++. ....++++++||+||||+.+.+ |.++++.+. ++|..+++.||+++|+|++|+|.+
T Consensus 482 ~l~~~l~~~~-----~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~-~~~~~~~~~v~~~~Lta~~Kl~~~ 551 (621)
T 2vgl_A 482 TVFEALQAPA-----CHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLH-SKFHLCSVPTRALLLSTYIKFVNL 551 (621)
T ss_dssp HHHHHHTSSS-----CCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcc-----chHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHH
Confidence 9999887653 2346789999999999998765 568898765 479999999999999999999877
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.1e-75 Score=701.58 Aligned_cols=474 Identities=21% Similarity=0.370 Sum_probs=426.9
Q ss_pred hhhhHHHHHHHHhhcC--hHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccc
Q 040316 11 FQRDLDDLIKGIRQQQ--IKESLFISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFY 88 (957)
Q Consensus 11 f~rsL~dfIr~IR~~k--~~E~~~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~ 88 (957)
.+++|++||++||+|+ .+|+++|++|+++||++|++++.+.|+++|+||+|++|+ |||++|+||+|+++|+|+++..
T Consensus 8 ~~~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~-G~d~~~~~~~vik~~~s~~~~~ 86 (618)
T 1w63_A 8 APIRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHML-GYPAHFGQLECLKLIASQKFTD 86 (618)
T ss_dssp CCCCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHT-TCCCGGGHHHHHHHHHSSSHHH
T ss_pred CcccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHc-CCCCcchHHHHHHHHcCCchHH
Confidence 4589999999999997 478999999999999999999999999999999999885 9999999999999999999999
Q ss_pred hhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh--hHHH------
Q 040316 89 KKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN--AVRV------ 160 (957)
Q Consensus 89 KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~--AvR~------ 160 (957)
||+||||++.++++++|+++|+||+|+|||+|+||++|++||++||+|+++++++++.+.|.++|.|. .||.
T Consensus 87 Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al 166 (618)
T 1w63_A 87 KRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCA 166 (618)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999982 3331
Q ss_pred -------------HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCC---CccCchHHHHHHHhh--------------cC
Q 040316 161 -------------CFKRLVENLESSEPVILSAVVGVFCELCLKDPR---SYLPLAPEFYKILVD--------------SK 210 (957)
Q Consensus 161 -------------~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~---~~l~Lap~L~~iL~~--------------~~ 210 (957)
+++.+.++|.|+|++|+.+|+.++++++..+|+ .|.+++|.++++|.+ .+
T Consensus 167 ~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 167 VHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp HHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred HHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 223456678899999999999999999988875 578899999998875 46
Q ss_pred ChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhc-----CCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCC
Q 040316 211 NNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRR-----TEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDD 285 (957)
Q Consensus 211 npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~-----t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ss 285 (957)
+||+|++++++|+.|++.+|+..+++++.+..++.+ +.+.+|+|||+++++.. ...+.+...|++.|+.||.++
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l-~~~~~l~~~a~~~L~~~L~~~ 325 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI-KSESGLRVLAINILGRFLLNN 325 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCS
T ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999888888888888753 34679999999999985 445677778999999999999
Q ss_pred CchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHH
Q 040316 286 DPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQI 365 (957)
Q Consensus 286 DpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~el 365 (957)
|+|+||+||.+|..|+..+|.+|++|...|+.|++|+|.+||++||++|+.|++++|+..|+++|+.|+.+.|.+||.++
T Consensus 326 d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~ 405 (618)
T 1w63_A 326 DKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADC 405 (618)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHH
Q 040316 366 LGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHR 445 (957)
Q Consensus 366 I~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~ 445 (957)
+.+|+.+|.+ | .+++.||+++|++++...+.++..++|..+++++.++|+.+.+++..++.+|.++ .....
T Consensus 406 v~~I~~la~k--~--~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~-----~~~~~ 476 (618)
T 1w63_A 406 ASGIFLAAEK--Y--APSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGD-----YSQQP 476 (618)
T ss_dssp HHHHHHHHHS--S--CCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHC-----CSCSH
T ss_pred HHHHHHHHHH--h--CccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcc-----cccHH
Confidence 9999999885 3 5789999999999999999999999999999999999999999999999988642 12345
Q ss_pred HHHHHhhhhccCCCCCCC------------H---HHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 446 ILSAAAWVSGEYVEFSRN------------P---FELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 446 ~l~a~aWIlGEY~~~i~~------------p---~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
+.++++||+||||+.+.+ | .++++.+++ .| .+++.||+++|+|++|+|.+
T Consensus 477 ~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 477 LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLI-SN-MSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHH-ST-TCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHh-cc-CCCHHHHHHHHHHHHHHHHh
Confidence 667899999999976543 3 344555554 23 68999999999999999877
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=1.3e-64 Score=601.99 Aligned_cols=449 Identities=18% Similarity=0.269 Sum_probs=400.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHH
Q 040316 35 KAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQL 114 (957)
Q Consensus 35 ~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtL 114 (957)
.|+++||++|++++.++|+++++|++|++|+ |+|++|+||+++++|+|+++..||+||+|+..+++.++|+++|+||+|
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~-G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l 91 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTV-GKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSF 91 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHT-TCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHC-CCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHH
Confidence 5899999999999999999999999998875 999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh--hHH---------------------HHHHHHHhhhcC
Q 040316 115 RKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN--AVR---------------------VCFKRLVENLES 171 (957)
Q Consensus 115 kKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~--AvR---------------------~~~~kL~elL~D 171 (957)
+|||+|+||++|++||++||+|+++++++.+.+.|.+++.|. .|| .+++.+.++|.|
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d 171 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIAD 171 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred HHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999982 222 145788889999
Q ss_pred CChhHHHHHHHHHHHhhhcCCCC-ccCchHHHHHHHh---hcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcC
Q 040316 172 SEPVILSAVVGVFCELCLKDPRS-YLPLAPEFYKILV---DSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRT 247 (957)
Q Consensus 172 ~D~sVv~AAv~vL~EI~~~np~~-~l~Lap~L~~iL~---~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t 247 (957)
+|++|+.+|+.+|++++..+|+. +..+.+..+..|. ...+||+|+++|++|+.|+|.+++....+++.+..++++
T Consensus 172 ~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~- 250 (591)
T 2vgl_B 172 SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSH- 250 (591)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCS-
T ss_pred CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcC-
Confidence 99999999999999999999877 5666666444332 258999999999999999999998888999999888876
Q ss_pred CcchHHHHHHHHHHhhcC---CcHHHHHHHHHHHHH---hhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccC
Q 040316 248 EAKSLLFECIRTVLSSLS---EYESAVKLAVVKVRE---FLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSD 321 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~---~~~~li~l~v~~L~~---fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D 321 (957)
.+.+|+|||+++++.+.+ .+++.++.++.++.. +|.++++|+||+||.+|..|+..+|.++++|...|++.++|
T Consensus 251 ~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d 330 (591)
T 2vgl_B 251 ANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYND 330 (591)
T ss_dssp STTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTS
T ss_pred CChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCC
Confidence 668999999999998643 223444444444433 44578999999999999999999999999999998866677
Q ss_pred CCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcc
Q 040316 322 GDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQ 401 (957)
Q Consensus 322 ~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~ 401 (957)
+ .+||++||++|+.|++++|+..|+.+|+.|+.+.|.+||.+++.+|+.+|.+ | .++++||+++|++++...+++
T Consensus 331 ~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~--~--~~~~~~~v~~Ll~ll~~~~~~ 405 (591)
T 2vgl_B 331 P-IYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK--V--EQSAERCVSTLLDLIQTKVNY 405 (591)
T ss_dssp C-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHHHHTCCHH
T ss_pred h-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--C--hhHHHHHHHHHHHHHcccchH
Confidence 7 9999999999999999999999999999999999999999999999988875 3 467899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHHHHHHHHhcccccCCCH
Q 040316 402 KGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLP 481 (957)
Q Consensus 402 v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~~iL~~LL~~~~~~es~ 481 (957)
+..+++..++++++++|+.+++++..+++.+.+ ...+.++.+++|++||||+.+.+++++++.+++ +|..+++
T Consensus 406 v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~------~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~-~~~~~~~ 478 (591)
T 2vgl_B 406 VVQEAIVVIRDIFRKYPNKYESIIATLCENLDS------LDEPDARAAMIWIVGEYAERIDNADELLESFLE-GFHDEST 478 (591)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTT------CCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHST-TCSSSCH
T ss_pred HHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHh------ccCHHHHHHHHHHHHcccccccCHHHHHHHHHH-hhccCCH
Confidence 999999999999999999999999988877643 346788999999999999999999999999876 6889999
Q ss_pred HHHHHHHHHHHHHHHH
Q 040316 482 SIRAVYVQSVFKVLIF 497 (957)
Q Consensus 482 ~Vq~~iLtAl~Klf~~ 497 (957)
.||+++|+|++|+|.+
T Consensus 479 ~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 479 QVQLTLLTAIVKLFLK 494 (591)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999876
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=2.4e-44 Score=403.08 Aligned_cols=297 Identities=15% Similarity=0.197 Sum_probs=197.1
Q ss_pred HHHHHHHHhcCCChH-HH-HHHHHHHHHHHhcCCCC-----cchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHH
Q 040316 36 AIEEIRREIKSTDLP-TK-SAALRKLSYLSSLHGAD-----MSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVIL 108 (957)
Q Consensus 36 elaEIR~eL~S~d~~-~K-~~AL~KLIYL~ML~G~D-----mS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlll 108 (957)
.++|.| .|+++... .| +.+|+|+||+.|. |++ ++++||+|+++|+|+++.+||+||||+..+.... +.++
T Consensus 27 v~qe~r-~fn~~~~~~~kc~~~l~kll~l~~~-G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i 103 (355)
T 3tjz_B 27 VLQEAR-VFNETPINPRKCAHILTKILYLINQ-GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI 103 (355)
T ss_dssp HHHHGG-GTTSSSCCHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG
T ss_pred HHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHC-CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH
Confidence 667765 89887543 44 5699999998874 999 6899999999999999999999999999988874 4467
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh--hhHH-------------------HHHHHHHh
Q 040316 109 LITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS--NAVR-------------------VCFKRLVE 167 (957)
Q Consensus 109 LatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~--~AvR-------------------~~~~kL~e 167 (957)
|+||+|+||++|+||++||+|||+||+|++++|++++.+.|.++|.| +.|| .|+..+.+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ 183 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQE 183 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 2333 23456788
Q ss_pred hhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhh--cCChHHHHHHHHHHHhhccCC-hHHHhHHHHHHHHHh
Q 040316 168 NLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVD--SKNNWLLIKVLKIFAKLATLE-PRLAKRVVEPICEFM 244 (957)
Q Consensus 168 lL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~--~~npWlqIkILkLL~~l~p~e-p~L~~kLl~~L~~lL 244 (957)
+|.|+||+|+++|+.++++|+..++..+.++ +..|.. ..+||+|+.+|++++.|.+.+ |+...++++.+.+++
T Consensus 184 ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kL----v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L 259 (355)
T 3tjz_B 184 AASSDNIMVQYHALGLLYHVRKNDRLAVSKM----ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCL 259 (355)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCHHHHHHH----HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCC
T ss_pred HhcCCCccHHHHHHHHHHHHHhhchHHHHHH----HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 8999999999999999999998775433333 333433 358999999999999999988 888899999999999
Q ss_pred hcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCH
Q 040316 245 RRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDY 324 (957)
Q Consensus 245 ~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~ 324 (957)
++ .+.||+|||+++|+...+........+++.|+.||.++|+|+||+||+.|.+++..+|.+++.|...|..|++|+|.
T Consensus 260 ~~-~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 260 RN-KHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANR 338 (355)
T ss_dssp CC-SSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------
T ss_pred cC-CChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcH
Confidence 86 77999999999999853323455677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCc
Q 040316 325 NIKLESLRLLMSMVSE 340 (957)
Q Consensus 325 sIR~~ALeLL~~Lvne 340 (957)
+|+..|+..|.+..++
T Consensus 339 sI~t~Aittllktg~e 354 (355)
T 3tjz_B 339 SIATLAITTLLKTGSE 354 (355)
T ss_dssp ----------------
T ss_pred hHHHHHHHHhhhccCC
Confidence 9999999999887765
No 5
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.29 E-value=3.4e-10 Score=135.40 Aligned_cols=416 Identities=11% Similarity=0.080 Sum_probs=247.5
Q ss_pred hhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCC--chhhHhhhHHHHHHhhhhh-
Q 040316 80 VMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIG--NVDLARDLTPEVFTLLSSN- 156 (957)
Q Consensus 80 lmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~--tpeLa~~L~~~V~klL~~~- 156 (957)
-+.+++...+-++--+++... .++++--+...+++=|.|+||++|--|+.++.++. .|++++.+.+.+..+|.+.
T Consensus 115 DL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d 192 (618)
T 1w63_A 115 DLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKN 192 (618)
T ss_dssp HHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCC
T ss_pred hcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCC
Confidence 355666666655555555443 24444445556666666666666666666666553 4555555555555555541
Q ss_pred ------h-----------------HHHHHHHHHhhhc---------------CCChhHHHHHHHHHHHhhhcCCCCccCc
Q 040316 157 ------A-----------------VRVCFKRLVENLE---------------SSEPVILSAVVGVFCELCLKDPRSYLPL 198 (957)
Q Consensus 157 ------A-----------------vR~~~~kL~elL~---------------D~D~sVv~AAv~vL~EI~~~np~~~l~L 198 (957)
| ++.+.+.+...|. ..++-....++.++..++..+|..-..+
T Consensus 193 ~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~ 272 (618)
T 1w63_A 193 HGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAM 272 (618)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1 1111233333333 2478888888888888887776533333
Q ss_pred hHHHHHHHhh-----cCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHH
Q 040316 199 APEFYKILVD-----SKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKL 273 (957)
Q Consensus 199 ap~L~~iL~~-----~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l 273 (957)
.+.+.+++.. ..++......++.+..+.. ++.+.....+.+..++.+ ....|-|-++.++......++.+++.
T Consensus 273 ~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~~p~~~~~ 350 (618)
T 1w63_A 273 NDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRVLAINILGRFLLN-NDKNIRYVALTSLLKTVQTDHNAVQR 350 (618)
T ss_dssp HHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTC-SSTTTHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHHhhCHHHHHH
Confidence 4444555432 1345667777888877654 455555667777777765 34556666666555443334566665
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc--ccHHHHHHHHH
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE--SNVAEISRVLI 351 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne--~Nv~~IV~ELl 351 (957)
+...+-..+.+.|..+|-.+|..|..|+.... +..-...++..+.+.|..+|..++..+..+|.. .+....+..|+
T Consensus 351 ~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll 428 (618)
T 1w63_A 351 HRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIM 428 (618)
T ss_dssp GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 66677777889999999999999999986432 233345566666778899999999999999885 78899999999
Q ss_pred HHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCc------------
Q 040316 352 NYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKD------------ 419 (957)
Q Consensus 352 ~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~------------ 419 (957)
+.+...+..++.+++..|..+..+ .++ -.+..+..|.+++...... +.+...+..++..+.+
T Consensus 429 ~lL~~~~~~v~~~~~~~l~~ii~~-~p~---l~~~~v~~L~~~l~~~~~~--~~~~~~~~wilGEy~~~i~~~~~~~~~~ 502 (618)
T 1w63_A 429 RVLTTAGSYVRDDAVPNLIQLITN-SVE---MHAYTVQRLYKAILGDYSQ--QPLVQVAAWCIGEYGDLLVSGQCEEEEP 502 (618)
T ss_dssp HHHHHTGGGSCSSHHHHHHHHHHH-SCS---THHHHHHHHHHHHHHCCSC--SHHHHHHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHhccchhHHHHHHHHHHHHhc-Chh---HHHHHHHHHHHHHhccccc--HHHHHHHHHHHhhhHHHhcccccccccc
Confidence 999888777788888888877764 222 2244677777777642111 1111222333322211
Q ss_pred --ch-HHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHH
Q 040316 420 --VR-PALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLI 496 (957)
Q Consensus 420 --ir-~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~ 496 (957)
+. ..++..+..++... ...+.++..++|.++-++-..++-.+.+..++.......+++||.-... |.
T Consensus 503 ~~~~~~~~~~~l~~~l~~~-----~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdRA~~-----y~ 572 (618)
T 1w63_A 503 IQVTEDEVLDILESVLISN-----MSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVE-----YN 572 (618)
T ss_dssp CCCCHHHHHHHHHHHHHST-----TCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHHHHH-----HH
T ss_pred cCCCHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHHHHH-----HH
Confidence 11 12334444434221 1245667777777776655444333444444443334455666665432 22
Q ss_pred HhhhhhhhhhccccccccccccCCChhhHhhhccccc
Q 040316 497 FCAHSYLLHKENISSVNTDNLASEVPESVFARMSCEN 533 (957)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (957)
+ ++....+++..+|+.||..+
T Consensus 573 ~----------------ll~~~~~~~~~vl~~~P~~~ 593 (618)
T 1w63_A 573 A----------------LFKKYDHMRSALLERMPVME 593 (618)
T ss_dssp H----------------HHHTTTTHHHHHHSCCCCCC
T ss_pred H----------------HHcCcHHHHHHHhhcCCCCC
Confidence 2 11112346788999999655
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.25 E-value=6.6e-09 Score=127.80 Aligned_cols=394 Identities=14% Similarity=0.125 Sum_probs=246.3
Q ss_pred hcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHH
Q 040316 81 MSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRV 160 (957)
Q Consensus 81 msS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~ 160 (957)
..|++-..++-+.-.+.++ ..+++........+. .+.+.++.+|-+|.-.|-+.....- ..+.++... .
T Consensus 22 ~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~-~~~~~~~~vR~~a~~~Lkn~i~~~w-~~~~~~~~~--------~ 90 (852)
T 4fdd_A 22 SQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLT-KLKSEDEPTRSLSGLILKNNVKAHF-QNFPNGVTD--------F 90 (852)
T ss_dssp HTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHTTTSG-GGCCHHHHH--------H
T ss_pred HhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHcc-CCCCHHHHH--------H
Confidence 3456666666666666543 445554444444443 3355667777777665554433211 011122111 2
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhcC-CCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHH-------
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLKD-PRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRL------- 232 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n-p~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L------- 232 (957)
+-..+.+.|.|+++.|...+..++..|+... +..|..+.|.++..+.+ .++..+-..+..|..++..-+..
T Consensus 91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 2235666788999999999999999998875 45677888999888864 55555555665555554321211
Q ss_pred --HhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCc-HHH---HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH
Q 040316 233 --AKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEY-ESA---VKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW 306 (957)
Q Consensus 233 --~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~-~~l---i~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~ 306 (957)
...+++.+...++. .+..|-.+++.++...+... ..+ +...+..|..++.+.++.+|..++.+|..++..+|.
T Consensus 170 ~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp SCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 23355555555554 55778888888876654322 222 234666677777889999999999999999999999
Q ss_pred HHhhhhHhhc----ccccCCCHHHHHHHHHHHhhhcCcc--------cHHHHHHHHHHHhh-----------h-------
Q 040316 307 AVLENKDFVI----KSLSDGDYNIKLESLRLLMSMVSES--------NVAEISRVLINYAL-----------K------- 356 (957)
Q Consensus 307 ~v~~h~~~Il----~cL~D~D~sIR~~ALeLL~~Lvne~--------Nv~~IV~ELl~yl~-----------~------- 356 (957)
.+.+|...++ .++.|+|..+|..|++.+..++... .+..++..|+..+. +
T Consensus 249 ~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 249 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 9888866554 5678999999999999999998743 34466777777662 2
Q ss_pred ----cChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcC----cchHHHHHHH
Q 040316 357 ----SDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVK----DVRPALVHVC 428 (957)
Q Consensus 357 ----sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp----~ir~~av~~l 428 (957)
.+...|..+...+..++... .. .-..-.+..+.+++......+....+..+-.++...+ ..-+.++..+
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~-~~--~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l 405 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVY-RD--ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHH-GG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhc-cH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 01124666777777666532 11 1112345555555555544455555555555543221 1224455666
Q ss_pred HHHhcCCcccCCCchHHHHHHHhhhhccCCCCCC------CHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHh
Q 040316 429 RNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSR------NPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFC 498 (957)
Q Consensus 429 ~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~------~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~ 498 (957)
...+.|+ .+.+..+++|.+|.|+..+. .-..++..|+. ......+.||.....++..+.-.+
T Consensus 406 ~~~l~d~-------~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~-~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 406 IQCLSDK-------KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK-RILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHTTCS-------SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCC-------CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHh
Confidence 6666542 47889999999999987432 13456666554 344567899999998888876543
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.22 E-value=7.2e-09 Score=120.07 Aligned_cols=335 Identities=11% Similarity=0.093 Sum_probs=162.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcch-hHHHHHHhhcCCCccchhhhHHHHHhhcCC--CchHHHHHHHH
Q 040316 37 IEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSF-AAFHAVEVMSSPQFFYKKIGYHAVTQSFND--DTPVILLITNQ 113 (957)
Q Consensus 37 laEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~-~~f~VVelmsS~~~~~KRlGYLaas~~~~~--~~dlllLatNt 113 (957)
+..+-..+++++...|..|++.+--+....|.+-.| .....+.....++...++..--.+..+... .++..-.....
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~ 91 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPP 91 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 445556666666666666555443321111432111 011111111234444444433333332211 11111112233
Q ss_pred HHHHhcCCCHHHHHHHHHhhccCCc---h-hhHhhhHHHHHHhhhhh--hHH--------------------HHHHHHHh
Q 040316 114 LRKDLNSSNQFEVSLALECLSRIGN---V-DLARDLTPEVFTLLSSN--AVR--------------------VCFKRLVE 167 (957)
Q Consensus 114 LkKDL~s~Np~vr~LALr~Ls~I~t---p-eLa~~L~~~V~klL~~~--AvR--------------------~~~~kL~e 167 (957)
|.+-+.++++.+|..|..+|+.+.. + .+...+.|-+..+..++ .+| .+++.+..
T Consensus 92 L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 171 (588)
T 1b3u_A 92 LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRN 171 (588)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333456777788777777776543 2 22334455554444431 111 23445556
Q ss_pred hhcCCChhHHHHHHHHHHHhhhcCCC-Cc-cCchHHHHHHHhhcCChHHHHHHHHHHHhhccC-Ch-HHHhHHHHHHHHH
Q 040316 168 NLESSEPVILSAVVGVFCELCLKDPR-SY-LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL-EP-RLAKRVVEPICEF 243 (957)
Q Consensus 168 lL~D~D~sVv~AAv~vL~EI~~~np~-~~-l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~-ep-~L~~kLl~~L~~l 243 (957)
++.|+++.|..+|+..+..++...+. .+ ..+.|.+..++.+ .++......++.|..+... .+ .....+++.+..+
T Consensus 172 l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 250 (588)
T 1b3u_A 172 LCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA 250 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTC-SCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 67888888888888888888765443 12 2455666655543 4444444445555544432 11 2233455555555
Q ss_pred hhcCCcchHHHHHHHHHHhhcC--CcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH------HHhhhhHhh
Q 040316 244 MRRTEAKSLLFECIRTVLSSLS--EYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW------AVLENKDFV 315 (957)
Q Consensus 244 L~~t~a~SVLyE~I~~Ii~~l~--~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~------~v~~h~~~I 315 (957)
+.. .+..|-..++.++-.... ..+.....++..+..++.+.++++|-.+..+|..++...+. .+..-...+
T Consensus 251 ~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 329 (588)
T 1b3u_A 251 AED-KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI 329 (588)
T ss_dssp HTC-SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred ccC-CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence 543 334444444444332211 01112234555666666677777777777777777654321 122223334
Q ss_pred cccccCCCHHHHHHHHHHHhhhcC---cc-cHHHHHHHHHHHhhhcChHHHHHHHHHHHHHH
Q 040316 316 IKSLSDGDYNIKLESLRLLMSMVS---ES-NVAEISRVLINYALKSDPEFCNQILGSILSTC 373 (957)
Q Consensus 316 l~cL~D~D~sIR~~ALeLL~~Lvn---e~-Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic 373 (957)
...++|++..+|..++..|..++. +. -...++.-|...+.+.+.+.|..++.++..++
T Consensus 330 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp HHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 445566666666666666555542 11 12334445555555555555555555444443
No 8
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.16 E-value=2.8e-09 Score=126.66 Aligned_cols=377 Identities=13% Similarity=0.155 Sum_probs=254.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcch-hHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHH--HHHHH
Q 040316 37 IEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMSF-AAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVIL--LITNQ 113 (957)
Q Consensus 37 laEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS~-~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlll--LatNt 113 (957)
+..+++.+.+++...|..|+.-|.. +.+.++.. ....+.+++.+++...|+-+.+++...+..+++.+- -.++.
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~---i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGC---IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHT---CCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHH
Confidence 4556777888888888888755543 22344443 455577889999999999999999988887787655 36789
Q ss_pred HHHHhcCCCHHHHHHHHHhhccCCchh-------hHhhhHHHHHHhhhhh---------------------hHHHHHHHH
Q 040316 114 LRKDLNSSNQFEVSLALECLSRIGNVD-------LARDLTPEVFTLLSSN---------------------AVRVCFKRL 165 (957)
Q Consensus 114 LkKDL~s~Np~vr~LALr~Ls~I~tpe-------La~~L~~~V~klL~~~---------------------AvR~~~~kL 165 (957)
+++=|.|+|+.+++.|+.+|+.|+..+ +.....+.+.+.+.+. ....+++.+
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l 244 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERV 244 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999999987532 2223334444444431 112345666
Q ss_pred HhhhcCCChhHHHHHHHHHHHhhh---cCCCCcc----CchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHH
Q 040316 166 VENLESSEPVILSAVVGVFCELCL---KDPRSYL----PLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVE 238 (957)
Q Consensus 166 ~elL~D~D~sVv~AAv~vL~EI~~---~np~~~l----~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~ 238 (957)
..+|.+.++.|+..|+.+++.+.. .++.... .+++.|+.++ + .++-.+...|+.+..+....|......+.
T Consensus 245 ~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~ 322 (591)
T 2vgl_B 245 TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S-GEPEVQYVALRNINLIVQKRPEILKQEIK 322 (591)
T ss_dssp TTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHCCSTTTTCTT
T ss_pred HHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 777889999999999999999975 3444332 3445555443 2 67777777777777766544443222111
Q ss_pred HHHHHhhc-CCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcc
Q 040316 239 PICEFMRR-TEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIK 317 (957)
Q Consensus 239 ~L~~lL~~-t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~ 317 (957)
.+ +.. +...+|-.+++.++...... +-+...+..|..++.+.|..+|-.++.++..++..+|.....+.+.++.
T Consensus 323 ~~---~~~~~d~~~Ir~~al~~L~~l~~~--~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ 397 (591)
T 2vgl_B 323 VF---FVKYNDPIYVKLEKLDIMIRLASQ--ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLD 397 (591)
T ss_dssp TT---SCCTTSCHHHHHHHHHHHHHTCCS--STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hh---eeccCChHHHHHHHHHHHHHHCCh--hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 11 111 23367778888877664333 2245677888899988899999999999999999999888999999999
Q ss_pred cccCCCHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHh
Q 040316 318 SLSDGDYNIKLESLRLLMSMVS--ESNVAEISRVLINYALKS-DPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEM 394 (957)
Q Consensus 318 cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~IV~ELl~yl~~s-D~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~L 394 (957)
.+.+.+.+++..++..+..++. ++-...++..|..++.+. ++..+..++-.||..|.. .++..-++..+++-
T Consensus 398 ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~-----~~~~~~~l~~l~~~ 472 (591)
T 2vgl_B 398 LIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAER-----IDNADELLESFLEG 472 (591)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT-----CTTHHHHHHHHSTT
T ss_pred HHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHccccc-----ccCHHHHHHHHHHh
Confidence 9999999999998887777642 333455777888887654 456666666666654432 22333355555443
Q ss_pred hccCCcchHHHHHHHHHHHHHhcCcchHHHHHHH
Q 040316 395 VRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVC 428 (957)
Q Consensus 395 l~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l 428 (957)
+......+...++..+..+..+.|+.....+..+
T Consensus 473 ~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~l 506 (591)
T 2vgl_B 473 FHDESTQVQLTLLTAIVKLFLKKPSETQELVQQV 506 (591)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 3333344555666667777766666543333333
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.16 E-value=1.3e-08 Score=114.14 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=200.1
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHhhccCCc--hhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHh
Q 040316 111 TNQLRKDLNSS-NQFEVSLALECLSRIGN--VDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCEL 187 (957)
Q Consensus 111 tNtLkKDL~s~-Np~vr~LALr~Ls~I~t--peLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI 187 (957)
+..|.+=|.+. ++.++..|+.+|+++.. ++....+ +.. .+++.|.++|.++++.|...|+.+|..+
T Consensus 66 i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-------~~~----~~i~~L~~lL~~~~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIV-------IQA----GAVPIFIELLSSEFEDVQEQAVWALGNI 134 (450)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHH-------HHT----THHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH-------HhC----CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34445555666 88899999999888765 3322111 111 2467788899999999999999999999
Q ss_pred hhcCCCC---c--cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCC-h----HHHhHHHHHHHHHhhcCCcchHHHHHH
Q 040316 188 CLKDPRS---Y--LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLE-P----RLAKRVVEPICEFMRRTEAKSLLFECI 257 (957)
Q Consensus 188 ~~~np~~---~--l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~e-p----~L~~kLl~~L~~lL~~t~a~SVLyE~I 257 (957)
+...+.. . ...+|.|.++|.+..++-.+...+..|..++... | .....+++.+..++.. ....+...++
T Consensus 135 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~ 213 (450)
T 2jdq_A 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV-SDTDVLADAC 213 (450)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC-CCHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc-CCHHHHHHHH
Confidence 9866431 1 2467888888876567777888888888887532 2 2335577888888875 4567777777
Q ss_pred HHHHhhcCCcHHHH-----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHh-----hhhHhhcccccCCCHHHH
Q 040316 258 RTVLSSLSEYESAV-----KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVL-----ENKDFVIKSLSDGDYNIK 327 (957)
Q Consensus 258 ~~Ii~~l~~~~~li-----~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~-----~h~~~Il~cL~D~D~sIR 327 (957)
.++.......+... ..++..|..+|.+.++.++..++.+|..|+...+...+ .-...++.+|.+++..+|
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr 293 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIK 293 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHH
Confidence 77766433322222 13677788888889999999999999999987664322 245667788999999999
Q ss_pred HHHHHHHhhhcC--cccHH-----HHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccc--hHHHHHHHHHhhccC
Q 040316 328 LESLRLLMSMVS--ESNVA-----EISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVD--FDWYASLLGEMVRIP 398 (957)
Q Consensus 328 ~~ALeLL~~Lvn--e~Nv~-----~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~d--feWyvdvLl~Ll~~~ 398 (957)
..|+..|..|+. +.+.. .++..|+..+.+.++..+..++.+|+.+|....++.... ..-.+..|++++...
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 373 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM 373 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 999999999984 34443 456678888888899999999999998876421111100 011445566666554
Q ss_pred CcchHHHHHHHHHHHHH
Q 040316 399 HCQKGEEIEHQIIDIAM 415 (957)
Q Consensus 399 ~~~v~~eI~~~L~dIi~ 415 (957)
...+...+...|.+++.
T Consensus 374 ~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 374 DSKIVQVALNGLENILR 390 (450)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.15 E-value=2.7e-08 Score=115.20 Aligned_cols=433 Identities=10% Similarity=0.075 Sum_probs=259.5
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCC-cchhHHHHH-HhhcCCCccchhhhHHHHHhhcCCCch-HHHHHHHHHHHHhcCC
Q 040316 45 KSTDLPTKSAALRKLSYLSSLHGAD-MSFAAFHAV-EVMSSPQFFYKKIGYHAVTQSFNDDTP-VILLITNQLRKDLNSS 121 (957)
Q Consensus 45 ~S~d~~~K~~AL~KLIYL~ML~G~D-mS~~~f~VV-elmsS~~~~~KRlGYLaas~~~~~~~d-lllLatNtLkKDL~s~ 121 (957)
.+.+...|..|+.-|..+.-..+.+ +...++.++ ++..++++..|..+...+..++..-++ ..--+...+.+-+.++
T Consensus 97 ~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~ 176 (588)
T 1b3u_A 97 TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDD 176 (588)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCS
T ss_pred hCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCC
Confidence 4445556655554444321111111 111233444 455677777777666655555443322 2223456666677899
Q ss_pred CHHHHHHHHHhhccCC----chhhHhhhHHHHHHhhhhh--hHH---------------------HHHHHHHhhhcCCCh
Q 040316 122 NQFEVSLALECLSRIG----NVDLARDLTPEVFTLLSSN--AVR---------------------VCFKRLVENLESSEP 174 (957)
Q Consensus 122 Np~vr~LALr~Ls~I~----tpeLa~~L~~~V~klL~~~--AvR---------------------~~~~kL~elL~D~D~ 174 (957)
++.+|..|+.+|+.+. .......+.|.+..++.++ .+| .++|.+..++.|++.
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~ 256 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSH
T ss_pred CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCH
Confidence 9999999999998874 2345577888888888772 222 123445667789999
Q ss_pred hHHHHHHHHHHHhhhcCC-CCc-cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCC-h-----HHHhHHHHHHHHHhhc
Q 040316 175 VILSAVVGVFCELCLKDP-RSY-LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLE-P-----RLAKRVVEPICEFMRR 246 (957)
Q Consensus 175 sVv~AAv~vL~EI~~~np-~~~-l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~e-p-----~L~~kLl~~L~~lL~~ 246 (957)
.|-.+|+.++..++..-+ ..+ ..++|.+.+++.+ .++.......+.|..+...- + .....+++.+..+++.
T Consensus 257 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d 335 (588)
T 1b3u_A 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD 335 (588)
T ss_dssp HHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC
Confidence 999999998888876432 111 2356777777754 56666666666666655421 1 2234566666666654
Q ss_pred CCcchHHHHHHHHHHhh---cCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh--HHHhhhhHhhcccccC
Q 040316 247 TEAKSLLFECIRTVLSS---LSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL--WAVLENKDFVIKSLSD 321 (957)
Q Consensus 247 t~a~SVLyE~I~~Ii~~---l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p--~~v~~h~~~Il~cL~D 321 (957)
.+..|-..++.++... +.. ......++..+..++.+.++++|..++.++..++...+ .........+..+++|
T Consensus 336 -~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 336 -ANQHVKSALASVIMGLSPILGK-DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413 (588)
T ss_dssp -SCHHHHHHHHTTGGGGHHHHCH-HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 3344444444333221 111 11223345556677788889999999999998886542 2234445666677899
Q ss_pred CCHHHHHHHHHHHhhhcCc----ccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhh--
Q 040316 322 GDYNIKLESLRLLMSMVSE----SNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMV-- 395 (957)
Q Consensus 322 ~D~sIR~~ALeLL~~Lvne----~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll-- 395 (957)
++..+|..+++.+..++.. .....++.-|+..+.+.+...|..++.+++.++... ..+|+++.++..+
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~------~~~~~~~~llp~l~~ 487 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF------GKEWAHATIIPKVLA 487 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHTHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh------CchhHHHHHHHHHHH
Confidence 9999999999999887642 122467888888888888999999999998887642 1256766555433
Q ss_pred --ccCCcchHHHHHHHHHHHHHhcCc--chHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCH---HHHH
Q 040316 396 --RIPHCQKGEEIEHQIIDIAMRVKD--VRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNP---FELM 468 (957)
Q Consensus 396 --~~~~~~v~~eI~~~L~dIi~rvp~--ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p---~~iL 468 (957)
......+....+..+..++..... ....++..+...+.|+ .++++..++|.+|+++..+... ..++
T Consensus 488 ~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~-------~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 560 (588)
T 1b3u_A 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP-------VANVRFNVAKSLQKIGPILDNSTLQSEVK 560 (588)
T ss_dssp TTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS-------CHHHHHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence 222222333333444444332111 1223444444445442 4678999999999998765431 2233
Q ss_pred HHHhcccccCCCHHHHHHHHHHHHHH
Q 040316 469 EALLQPRTNLLLPSIRAVYVQSVFKV 494 (957)
Q Consensus 469 ~~LL~~~~~~es~~Vq~~iLtAl~Kl 494 (957)
..| ..-..+.++.||.....|+..+
T Consensus 561 p~l-~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 561 PIL-EKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHH-HHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHH-HHHcCCCchhHHHHHHHHHHHh
Confidence 322 2234567888888887776654
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.11 E-value=1.5e-08 Score=117.57 Aligned_cols=332 Identities=10% Similarity=0.064 Sum_probs=226.1
Q ss_pred hhHHHHHHhhcCCCccchhhhHHHHHhhcCCC--chHHHH----HHHHHHHHhcCCC-HHHHHHHHHhhccCCc--hhhH
Q 040316 72 FAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDD--TPVILL----ITNQLRKDLNSSN-QFEVSLALECLSRIGN--VDLA 142 (957)
Q Consensus 72 ~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~--~dlllL----atNtLkKDL~s~N-p~vr~LALr~Ls~I~t--peLa 142 (957)
+....+++.+.+++...+.-+-.++..++... +....+ ++..|.+=|.+++ +.++..|+.+|++|.. ++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 44677888888888877776666665553322 221111 3456666677776 8899899999888765 2222
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC---c--cCchHHHHHHHhhcCChHHHHH
Q 040316 143 RDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRS---Y--LPLAPEFYKILVDSKNNWLLIK 217 (957)
Q Consensus 143 ~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~---~--l~Lap~L~~iL~~~~npWlqIk 217 (957)
..+ +.. .+++.|..+|.+.++.|...|+.+|..|+...+.. . ...+|.|+++|....++-.+..
T Consensus 154 ~~~-------~~~----g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~ 222 (528)
T 4b8j_A 154 KVV-------IDH----GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRN 222 (528)
T ss_dssp HHH-------HHT----THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHH
T ss_pred HHH-------HhC----CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHH
Confidence 111 111 24577888999999999999999999998765531 1 2467888888866567777777
Q ss_pred HHHHHHhhccCCh----HHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhhcCCCch
Q 040316 218 VLKIFAKLATLEP----RLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVK-----LAVVKVREFLVDDDPN 288 (957)
Q Consensus 218 ILkLL~~l~p~ep----~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL~ssDpN 288 (957)
.+..|..++...| .....+++.|..++.+ ....|...++.++.......+...+ .++..|..+|.+.++.
T Consensus 223 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~ 301 (528)
T 4b8j_A 223 ATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301 (528)
T ss_dssp HHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChh
Confidence 8888888776532 2334567888888876 5577888888887765444333322 2567888888888999
Q ss_pred HHHHHHHHHHHHhhhChHHHhh-----hhHhhcccccCC-CHHHHHHHHHHHhhhcC--cccHHH-----HHHHHHHHhh
Q 040316 289 LKYLGLQALSIIAPKHLWAVLE-----NKDFVIKSLSDG-DYNIKLESLRLLMSMVS--ESNVAE-----ISRVLINYAL 355 (957)
Q Consensus 289 lrYvaL~~L~~Iv~~~p~~v~~-----h~~~Il~cL~D~-D~sIR~~ALeLL~~Lvn--e~Nv~~-----IV~ELl~yl~ 355 (957)
++.-++.+|..|+...+...+. -...++.+|.++ +..||..|+..|..|+. ...+.. ++..|+..+.
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 9999999999999866543322 246677788888 99999999999999984 333333 3467888888
Q ss_pred hcChHHHHHHHHHHHHHHhhhhcccccch--HHHHHHHHHhhccCCcchHHHHHHHHHHHHH
Q 040316 356 KSDPEFCNQILGSILSTCCRNLYEVIVDF--DWYASLLGEMVRIPHCQKGEEIEHQIIDIAM 415 (957)
Q Consensus 356 ~sD~~~r~elI~aI~~ic~~~~y~~~~df--eWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~ 415 (957)
..+..++..++.+|+.+|.....+..... .-.+..|++++......+...+...|.+++.
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999988764211111000 1245667777776655555555556666554
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.09 E-value=3.3e-08 Score=114.95 Aligned_cols=332 Identities=10% Similarity=0.049 Sum_probs=224.1
Q ss_pred hhHHHHHHhhcCCCccchhhhHHHHHhhcCC--CchHHH----HHHHHHHHHhcCC-CHHHHHHHHHhhccCCc--hhhH
Q 040316 72 FAAFHAVEVMSSPQFFYKKIGYHAVTQSFND--DTPVIL----LITNQLRKDLNSS-NQFEVSLALECLSRIGN--VDLA 142 (957)
Q Consensus 72 ~~~f~VVelmsS~~~~~KRlGYLaas~~~~~--~~dlll----LatNtLkKDL~s~-Np~vr~LALr~Ls~I~t--peLa 142 (957)
.....+++.+.+.+...++.+-.++..++.. ++..-. -++..|.+=|.++ ++.++..|+.+|+++.. ++..
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4466777778888877777777766665543 222111 1356677777886 89999999999998876 3322
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC-----ccCchHHHHHHHhhcCChHHHHH
Q 040316 143 RDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRS-----YLPLAPEFYKILVDSKNNWLLIK 217 (957)
Q Consensus 143 ~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~-----~l~Lap~L~~iL~~~~npWlqIk 217 (957)
..+ +.. .+++.|..+|.+.++.|...|+.+|..++...+.. -...+|.|+++|.+ .++-.+..
T Consensus 167 ~~~-------~~~----g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~ 234 (530)
T 1wa5_B 167 KVV-------VDA----DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRT 234 (530)
T ss_dssp HHH-------HHT----TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHH
T ss_pred HHH-------HHC----CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHH
Confidence 111 111 13466777788889999999999999998765431 12467888888876 56666677
Q ss_pred HHHHHHhhccCC-h----HHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhhcCCCc
Q 040316 218 VLKIFAKLATLE-P----RLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVK-----LAVVKVREFLVDDDP 287 (957)
Q Consensus 218 ILkLL~~l~p~e-p----~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL~ssDp 287 (957)
.+..|..++... | .....+++.|..++.+ ....|...++.++.......+.... .++..|..+|.+.++
T Consensus 235 a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~ 313 (530)
T 1wa5_B 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313 (530)
T ss_dssp HHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh
Confidence 777888777532 2 2334567788888876 4567777777777665433333222 356778888888899
Q ss_pred hHHHHHHHHHHHHhhhChHHHh-----hhhHhhcccccCCCHHHHHHHHHHHhhhcC--cccHHH-----HHHHHHHHhh
Q 040316 288 NLKYLGLQALSIIAPKHLWAVL-----ENKDFVIKSLSDGDYNIKLESLRLLMSMVS--ESNVAE-----ISRVLINYAL 355 (957)
Q Consensus 288 NlrYvaL~~L~~Iv~~~p~~v~-----~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~-----IV~ELl~yl~ 355 (957)
.++..++.+|..|+...+...+ .-...++.+|.+++..+|..|+..|..++. ..++.. ++..|+..+.
T Consensus 314 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 9999999999999976654322 245677888999999999999999999984 344443 4568888888
Q ss_pred hcChHHHHHHHHHHHHHHhhhhc--ccccc--hHHHHHHHHHhhccCCcchHHHHHHHHHHHHHh
Q 040316 356 KSDPEFCNQILGSILSTCCRNLY--EVIVD--FDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMR 416 (957)
Q Consensus 356 ~sD~~~r~elI~aI~~ic~~~~y--~~~~d--feWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~r 416 (957)
..+..++..++.+|+.+|....+ +.... ..-.+..|++++......+...+...|.+++..
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999988764211 11000 011456667777665555555555556555543
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.08 E-value=1.6e-07 Score=105.41 Aligned_cols=325 Identities=12% Similarity=0.067 Sum_probs=220.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC--c-----c-hhHHHHHHhhcCC-CccchhhhHHHHHhhcCCCchHH
Q 040316 37 IEEIRREIKSTDLPTKSAALRKLSYLSSLHGAD--M-----S-FAAFHAVEVMSSP-QFFYKKIGYHAVTQSFNDDTPVI 107 (957)
Q Consensus 37 laEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~D--m-----S-~~~f~VVelmsS~-~~~~KRlGYLaas~~~~~~~dll 107 (957)
+..+-+.+++.+...+..|+..|-.+.. .+.+ + . -+....++++.+. +...+.-+.-++..+...+++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~-~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLS-KEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHH-SSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc-CCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3444455555555555555544443211 0111 1 1 2345556677766 66666666666665555443321
Q ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHhhccCCch--hhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcC-CChhHHHH
Q 040316 108 L-----LITNQLRKDLNSSNQFEVSLALECLSRIGNV--DLARDLTPEVFTLLSSNAVRVCFKRLVENLES-SEPVILSA 179 (957)
Q Consensus 108 l-----LatNtLkKDL~s~Np~vr~LALr~Ls~I~tp--eLa~~L~~~V~klL~~~AvR~~~~kL~elL~D-~D~sVv~A 179 (957)
. -++..|.+=|.++++.+|..|+.+|+++... +.... ++.. .+++.|..+|.+ .++.|..+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~-------~~~~----~~i~~L~~~l~~~~~~~v~~~ 169 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY-------VLDC----NILPPLLQLFSKQNRLTMTRN 169 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHT----TCHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH-------HHHC----CCHHHHHHHhcCCCCHHHHHH
Confidence 1 2567777778899999999999999988652 21111 0111 134567777874 78999999
Q ss_pred HHHHHHHhhhcC-CC----CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-----HHHHHHHHHhhcCCc
Q 040316 180 VVGVFCELCLKD-PR----SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-----RVVEPICEFMRRTEA 249 (957)
Q Consensus 180 Av~vL~EI~~~n-p~----~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-----kLl~~L~~lL~~t~a 249 (957)
|+.++..++... |. .....+|.+.++|.. .++..+...+..|..++...+.... .+++.+..++.+ ..
T Consensus 170 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~ 247 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH-ND 247 (450)
T ss_dssp HHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-SC
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-Cc
Confidence 999999999754 43 134577888888864 6788888889999998876543222 356777777865 55
Q ss_pred chHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHh-----hhhHhhcccc
Q 040316 250 KSLLFECIRTVLSSLSEYESAVK-----LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVL-----ENKDFVIKSL 319 (957)
Q Consensus 250 ~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~-----~h~~~Il~cL 319 (957)
..+...++.++.......+...+ .++..|..+|.+.++.+|.-++.+|..|+...+...+ .-...++.+|
T Consensus 248 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l 327 (450)
T 2jdq_A 248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 67888888877665444333222 3677888888888999999999999999975554332 3446677888
Q ss_pred cCCCHHHHHHHHHHHhhhcCc---ccHHH-----HHHHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 320 SDGDYNIKLESLRLLMSMVSE---SNVAE-----ISRVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 320 ~D~D~sIR~~ALeLL~~Lvne---~Nv~~-----IV~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
.++|..+|..|...|..++.. +++.. ++..|...+...+..++..++.+|..++..
T Consensus 328 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999743 44443 567788888888999999999988877754
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.07 E-value=2.4e-06 Score=105.10 Aligned_cols=404 Identities=15% Similarity=0.117 Sum_probs=242.4
Q ss_pred CCccchhhhHHHHHhhcCCC-chHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCc--h----hhHhhhHHHHHHhhhhh
Q 040316 84 PQFFYKKIGYHAVTQSFNDD-TPVILLITNQLRKDLNSSNQFEVSLALECLSRIGN--V----DLARDLTPEVFTLLSSN 156 (957)
Q Consensus 84 ~~~~~KRlGYLaas~~~~~~-~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~t--p----eLa~~L~~~V~klL~~~ 156 (957)
.++..++.+.-++..+.... .++.--+...+..=+.++++.+|-.|+.+|++|.. + .....+.|.+.+++.|+
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~ 412 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK 412 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS
T ss_pred ccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 34556765555554433322 23444566777777889999999999999999865 1 24466777888888772
Q ss_pred --hHH------------------------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhc-
Q 040316 157 --AVR------------------------VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDS- 209 (957)
Q Consensus 157 --AvR------------------------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~- 209 (957)
.|| .+++.|.+.|.|.++.|..+|+.++..++..-+....+..|.++..|...
T Consensus 413 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l 492 (852)
T 4fdd_A 413 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 492 (852)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH
Confidence 222 12345667788999999999999888887654443444445554444321
Q ss_pred --CChHHHHHHHHHHHhhcc------CChHHHhHHHHHHHHHhhcC--Ccc--hHHHHHHHHHHhhcCC-----cHHHHH
Q 040316 210 --KNNWLLIKVLKIFAKLAT------LEPRLAKRVVEPICEFMRRT--EAK--SLLFECIRTVLSSLSE-----YESAVK 272 (957)
Q Consensus 210 --~npWlqIkILkLL~~l~p------~ep~L~~kLl~~L~~lL~~t--~a~--SVLyE~I~~Ii~~l~~-----~~~li~ 272 (957)
...-....++..++.+.. ..+.....+++.+...+..- ... .-+++|+..+...+.. .+.++.
T Consensus 493 ~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~ 572 (852)
T 4fdd_A 493 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572 (852)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 222222234444444432 23455566777666544321 112 2367888777764322 234455
Q ss_pred HHHHHHHHhh-------------cCCCchHHHHHHHHHHHHhhhChHHHh------hhhHhhcccccCCCHHHHHHHHHH
Q 040316 273 LAVVKVREFL-------------VDDDPNLKYLGLQALSIIAPKHLWAVL------ENKDFVIKSLSDGDYNIKLESLRL 333 (957)
Q Consensus 273 l~v~~L~~fL-------------~ssDpNlrYvaL~~L~~Iv~~~p~~v~------~h~~~Il~cL~D~D~sIR~~ALeL 333 (957)
.+++.|...+ ...|.+++-.++..+..|+..-..-+. .....++.|+.|++..+|..+..+
T Consensus 573 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~ 652 (852)
T 4fdd_A 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL 652 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHH
Confidence 5666666543 123677888889999988875433333 346778889999999999999999
Q ss_pred HhhhcC--ccc----HHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCc--chHHH
Q 040316 334 LMSMVS--ESN----VAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHC--QKGEE 405 (957)
Q Consensus 334 L~~Lvn--e~N----v~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~--~v~~e 405 (957)
+-.++. ... +..++.-|.+++...+.+.+..++.+|+.+|......+.+-..-.+..|+.++..... .+.+.
T Consensus 653 l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~ 732 (852)
T 4fdd_A 653 LGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLEN 732 (852)
T ss_dssp HHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHH
Confidence 988873 233 3556666777776677889999999999988753222222223355566666654422 35556
Q ss_pred HHHHHHHHHHhcCcc-h---HHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCC-CHHHHHHHHhcccccCCC
Q 040316 406 IEHQIIDIAMRVKDV-R---PALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSR-NPFELMEALLQPRTNLLL 480 (957)
Q Consensus 406 I~~~L~dIi~rvp~i-r---~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~-~p~~iL~~LL~~~~~~es 480 (957)
++..+-.++.++|+. . ..++...+..|.+ .-++.....+....+-++..|...+. +-..+++.+. ++...+
T Consensus 733 a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~--~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~--~~~~~~ 808 (852)
T 4fdd_A 733 TAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN--IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVA--SWINPK 808 (852)
T ss_dssp HHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT--SCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH--TCSSCC
T ss_pred HHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH--hcCCCC
Confidence 666777777776642 1 2344455555532 11122234466666667766655322 2234445433 245557
Q ss_pred HHHHHHHHHHH
Q 040316 481 PSIRAVYVQSV 491 (957)
Q Consensus 481 ~~Vq~~iLtAl 491 (957)
++.+..+.+.+
T Consensus 809 ~~l~~~~~~~l 819 (852)
T 4fdd_A 809 DDLRDMFCKIL 819 (852)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766655544
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.04 E-value=1.1e-07 Score=110.67 Aligned_cols=328 Identities=13% Similarity=0.128 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC-Cc-------chhHHHHHHhhcCC-CccchhhhHHHHHhhcCCC
Q 040316 33 ISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGA-DM-------SFAAFHAVEVMSSP-QFFYKKIGYHAVTQSFNDD 103 (957)
Q Consensus 33 I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~-Dm-------S~~~f~VVelmsS~-~~~~KRlGYLaas~~~~~~ 103 (957)
+...+..+-+.|++.+...+..|+..|..+. .+. +- .-+....++++.++ +...+..+.-++..+...+
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll--~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQIL--SREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHT--CCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh--CCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3345677777888888888888887777642 222 21 23466677788876 7777877777777766655
Q ss_pred chHHHH-----HHHHHHHHhcCCCHHHHHHHHHhhccCCch--hhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhH
Q 040316 104 TPVILL-----ITNQLRKDLNSSNQFEVSLALECLSRIGNV--DLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVI 176 (957)
Q Consensus 104 ~dlllL-----atNtLkKDL~s~Np~vr~LALr~Ls~I~tp--eLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sV 176 (957)
++..-. ++..|.+=|.++++.++..|+.+|++|... +.... ++.. .+++.|..+|.+.++.|
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~-------~~~~----~~l~~L~~ll~~~~~~v 231 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY-------VLQC----NAMEPILGLFNSNKPSL 231 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHT----TCHHHHHHGGGSCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH-------HHHc----CcHHHHHHHhccCCHHH
Confidence 432221 256666667778999999999999998642 22111 0111 23567888888899999
Q ss_pred HHHHHHHHHHhhhcC-CCC----ccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-----HHHHHHHHHhhc
Q 040316 177 LSAVVGVFCELCLKD-PRS----YLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-----RVVEPICEFMRR 246 (957)
Q Consensus 177 v~AAv~vL~EI~~~n-p~~----~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-----kLl~~L~~lL~~ 246 (957)
..+|+.+|..++... +.. ...++|.|.++|.. .++..+...+..|..++...+.... .+++.+..++.+
T Consensus 232 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC
Confidence 999999999999765 331 13567888888764 6788888899999998876554333 345677777775
Q ss_pred CCcchHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHh-----hhhHhhc
Q 040316 247 TEAKSLLFECIRTVLSSLSEYESAVK-----LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVL-----ENKDFVI 316 (957)
Q Consensus 247 t~a~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~-----~h~~~Il 316 (957)
....|...|+.++.......+...+ .++..|..+|.+.++.+|..++.+|..|+...+..++ .-...++
T Consensus 311 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 389 (530)
T 1wa5_B 311 -ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389 (530)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred -CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 5577888888887775444333222 3566788888888999999999999999976654433 2345677
Q ss_pred ccccCCCHHHHHHHHHHHhhhcCc-----ccHHH-----HHHHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 317 KSLSDGDYNIKLESLRLLMSMVSE-----SNVAE-----ISRVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 317 ~cL~D~D~sIR~~ALeLL~~Lvne-----~Nv~~-----IV~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
.+|.+++..+|..|+..|..|+.. .++.. ++..|...+...++.++..++.++..++..
T Consensus 390 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999754 34333 556788888888889998888888777653
No 16
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.98 E-value=2.7e-08 Score=105.77 Aligned_cols=240 Identities=10% Similarity=0.059 Sum_probs=174.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhh
Q 040316 110 ITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCL 189 (957)
Q Consensus 110 atNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~ 189 (957)
+++.|.+.|.++|+.+|..|+.+|+.+..++. ++.|.++|.|+++.|...|+.+|..+..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~--------------------~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDA--------------------VRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHH--------------------HHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchH--------------------HHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 46788889999999999999999999986543 3346677888999999999999988763
Q ss_pred cCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHH
Q 040316 190 KDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYES 269 (957)
Q Consensus 190 ~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~ 269 (957)
.. .....+++.+.+.+.+..+++.....+..|+.+...++.....+++.+...++. .+..|-+.++.++..... +
T Consensus 84 ~~-~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d-~~~~vR~~a~~aL~~~~~--~- 158 (280)
T 1oyz_A 84 CK-KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD-KSTNVRRATAFAISVIND--K- 158 (280)
T ss_dssp CT-TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC-SCHHHHHHHHHHHHTC------
T ss_pred cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC-CCHHHHHHHHHHHHhcCC--H-
Confidence 21 122223333443445568889999999999998765555555677788777766 667888888888765322 1
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHH
Q 040316 270 AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRV 349 (957)
Q Consensus 270 li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~E 349 (957)
.++..|..++.+.++.+|+.++.+|..+....+.++ ..++.+++|+|..+|..|+..|..+.++.-+..++.
T Consensus 159 ---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~- 230 (280)
T 1oyz_A 159 ---ATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR----DCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCD- 230 (280)
T ss_dssp ---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHH----HHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHH-
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHH----HHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHH-
Confidence 245667778889999999999999999865555554 456677899999999999999999998765555544
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhcc
Q 040316 350 LINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRI 397 (957)
Q Consensus 350 Ll~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~ 397 (957)
.+.+ ++++..++.+++.+.. +. ++..|.+++..
T Consensus 231 ---~l~d--~~vr~~a~~aL~~i~~-------~~---~~~~L~~~l~~ 263 (280)
T 1oyz_A 231 ---ELKK--NTVYDDIIEAAGELGD-------KT---LLPVLDTMLYK 263 (280)
T ss_dssp ---HHTS--SSCCHHHHHHHHHHCC-------GG---GHHHHHHHHTT
T ss_pred ---HhcC--ccHHHHHHHHHHhcCc-------hh---hhHHHHHHHhc
Confidence 4443 3488888888876532 12 56667776654
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.98 E-value=8.6e-07 Score=102.72 Aligned_cols=327 Identities=14% Similarity=0.126 Sum_probs=233.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC---c-----chhHHHHHHhhcCCC-ccchhhhHHHHHhhcCCCchH
Q 040316 36 AIEEIRREIKSTDLPTKSAALRKLSYLSSLHGAD---M-----SFAAFHAVEVMSSPQ-FFYKKIGYHAVTQSFNDDTPV 106 (957)
Q Consensus 36 elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~D---m-----S~~~f~VVelmsS~~-~~~KRlGYLaas~~~~~~~dl 106 (957)
.+..+-+.|.+.+...+..|++.|..+. .|.+ . .-+....++++.+++ ...+..+.-++..+...+++.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~--s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLL--SIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHH--TCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHh--cCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3677788888888888888888777642 2443 1 124566778888876 777777777777766655543
Q ss_pred HHH-----HHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhh-cCCChhHHHHH
Q 040316 107 ILL-----ITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENL-ESSEPVILSAV 180 (957)
Q Consensus 107 llL-----atNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL-~D~D~sVv~AA 180 (957)
... ++..|.+=|.++++.++..|+.+|++|.... +.....+... .+++.|..+| .+.++.|...|
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~------~~~~~~i~~~---g~l~~Ll~lL~~~~~~~v~~~a 223 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS------PKCRDLVLAN---GALLPLLAQLNEHTKLSMLRNA 223 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC------HHHHHHHHHT---TCHHHHHHTCCTTCCHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC------hhhHHHHHHC---CcHHHHHHHHhcCCCHHHHHHH
Confidence 222 5677888889999999999999999985311 1111111110 1356677888 67899999999
Q ss_pred HHHHHHhhhcCCCC----ccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-----HHHHHHHHHhhcCCcch
Q 040316 181 VGVFCELCLKDPRS----YLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-----RVVEPICEFMRRTEAKS 251 (957)
Q Consensus 181 v~vL~EI~~~np~~----~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-----kLl~~L~~lL~~t~a~S 251 (957)
+.+|..++...|.. ....+|.|.++|.. .++..+...+..|..++...+.... .+++.+..++.+ ....
T Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~ 301 (528)
T 4b8j_A 224 TWTLSNFCRGKPQPSFEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-PSPS 301 (528)
T ss_dssp HHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-SCHH
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-CChh
Confidence 99999999876442 13467788888754 6788889999999998876554332 245677888876 4578
Q ss_pred HHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhhcCC-CchHHHHHHHHHHHHhhhChHHHhh-----hhHhhccccc
Q 040316 252 LLFECIRTVLSSLSEYESAVK-----LAVVKVREFLVDD-DPNLKYLGLQALSIIAPKHLWAVLE-----NKDFVIKSLS 320 (957)
Q Consensus 252 VLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL~ss-DpNlrYvaL~~L~~Iv~~~p~~v~~-----h~~~Il~cL~ 320 (957)
|...|+.++.......+...+ .++..|..+|.+. ++.++.-++.+|..|+...+..++. -...++.+|.
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 888888888765443333322 2567788888887 9999999999999998766543332 2456777888
Q ss_pred CCCHHHHHHHHHHHhhhcCc---ccHHH-----HHHHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 321 DGDYNIKLESLRLLMSMVSE---SNVAE-----ISRVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 321 D~D~sIR~~ALeLL~~Lvne---~Nv~~-----IV~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
+.|..+|..|+..|..++.. .+... ++..|...+...|+.++..++.+|..++..
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999998865 44443 456788888888899988888888877653
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.93 E-value=7.7e-07 Score=108.15 Aligned_cols=323 Identities=11% Similarity=0.079 Sum_probs=199.1
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcC-CC-CccCchHHHHHHHhhcCChHHHHHHHHHHHhhccC---C----hHHH
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKD-PR-SYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL---E----PRLA 233 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~n-p~-~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~---e----p~L~ 233 (957)
..+.+.|.++++.|...+..++..|+... |. .|..++|.++..+.+..++-..-..+++|..++.. + ....
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 45666778888888888888888887764 53 67667788887776532444444445555444321 1 2234
Q ss_pred hHHHHHHHHHhhcC-CcchHHHHHHHHHHhhcCCc------HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH
Q 040316 234 KRVVEPICEFMRRT-EAKSLLFECIRTVLSSLSEY------ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW 306 (957)
Q Consensus 234 ~kLl~~L~~lL~~t-~a~SVLyE~I~~Ii~~l~~~------~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~ 306 (957)
..+++.+...+... .+..|-..+++++...+.-. .......+..|..++.+.++.+|-.++.+|..|+..+|.
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55667776666653 14667777777765532111 111234566677777888999999999999999999888
Q ss_pred HHhhhhH-hh----cccccCCCHHHHHHHHHHHhhhcCcc-----------------------cHHHHHHHHHHHhhhc-
Q 040316 307 AVLENKD-FV----IKSLSDGDYNIKLESLRLLMSMVSES-----------------------NVAEISRVLINYALKS- 357 (957)
Q Consensus 307 ~v~~h~~-~I----l~cL~D~D~sIR~~ALeLL~~Lvne~-----------------------Nv~~IV~ELl~yl~~s- 357 (957)
.+.+|.. .| +.++.|.|..+|..+++.+..++... .+..|+..|+..+.+.
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7777766 44 44678999999999999998887642 2356777777777653
Q ss_pred ------ChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcC-c-ch---HHHHH
Q 040316 358 ------DPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVK-D-VR---PALVH 426 (957)
Q Consensus 358 ------D~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp-~-ir---~~av~ 426 (957)
+...|..+...+..++..... .-..-.+..+.+++......+.......+-.++.... . +. +.++.
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~ 414 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALP 414 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 235777777777777654211 1122344555555544333333344444444442211 1 11 12333
Q ss_pred HHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCC-------CHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 427 VCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSR-------NPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 427 ~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~-------~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
.+...+.| ..+.+..+++|++|.|+..+. .-..++..++. .+.. ++.||.....++..+.-.
T Consensus 415 ~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~-~l~~-~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 415 SILNLMND-------QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI-GLQD-HPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHGGGC-------SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH-HHTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-------CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH-Hhcc-ChHHHHHHHHHHHHHHHh
Confidence 44444433 246788899999999876532 23456665554 2333 378888777777766544
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.91 E-value=1.7e-07 Score=105.01 Aligned_cols=284 Identities=14% Similarity=0.147 Sum_probs=182.4
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcC-CC-CccCchHHHHHHHhhcC-ChHHHHHHHHHHHhhccC-C----hHHHh
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKD-PR-SYLPLAPEFYKILVDSK-NNWLLIKVLKIFAKLATL-E----PRLAK 234 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~n-p~-~~l~Lap~L~~iL~~~~-npWlqIkILkLL~~l~p~-e----p~L~~ 234 (957)
..|.+.|.+.++.| ..+..++.+|+... |. .|..++|.++..+.+.. ++=..-..+.+|..++.. . .....
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 171 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN 171 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH
Confidence 34667788888888 88888888888764 43 67788899998887532 443444555555554431 1 12234
Q ss_pred HHHHHHHHHhhcCC-cchHHHHHHHHHHhhcCCcH------HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHH
Q 040316 235 RVVEPICEFMRRTE-AKSLLFECIRTVLSSLSEYE------SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWA 307 (957)
Q Consensus 235 kLl~~L~~lL~~t~-a~SVLyE~I~~Ii~~l~~~~------~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~ 307 (957)
.+++.+...+.... +..|-.++++++...+.... .....++..|...+.+.++.+|-.++.+|..++..+|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777776642 56788888888766432111 112334666667778889999999999999999999887
Q ss_pred HhhhhH-hh----cccccCCCHHHHHHHHHHHhhhcCcc---------------------------cHHHHHHHHHHHhh
Q 040316 308 VLENKD-FV----IKSLSDGDYNIKLESLRLLMSMVSES---------------------------NVAEISRVLINYAL 355 (957)
Q Consensus 308 v~~h~~-~I----l~cL~D~D~sIR~~ALeLL~~Lvne~---------------------------Nv~~IV~ELl~yl~ 355 (957)
+.+|.. .+ +.++.|.+..+|..+++.+..++... .+..++..|+.++.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 331 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH
Confidence 776665 43 44667999999999999998887642 13567777777775
Q ss_pred hc-------ChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhh----ccCCcchHHHHHHHHHHHHHhcC-c----
Q 040316 356 KS-------DPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMV----RIPHCQKGEEIEHQIIDIAMRVK-D---- 419 (957)
Q Consensus 356 ~s-------D~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll----~~~~~~v~~eI~~~L~dIi~rvp-~---- 419 (957)
+. +...|..+...+..+|... + ++++..++.++ ....-.+....+..+-.++.... +
T Consensus 332 ~~d~d~~~~~~~~r~~a~~~L~~l~~~~-----~--~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 332 KQDENDDDDDWNPCKAAGVCLMLLATCC-----E--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp CCCSSCCTTCCSHHHHHHHHHHHHHHHT-----T--TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred hcccccccccchHHHHHHHHHHHHHHhc-----c--HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 43 2356777777777666531 1 24555555433 33333344445555555543221 1
Q ss_pred chHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCC
Q 040316 420 VRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFS 461 (957)
Q Consensus 420 ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i 461 (957)
.-+.++..+...|.|+ .+.+..+++|.+|.|+...
T Consensus 405 ~l~~~~~~l~~~l~d~-------~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDP-------SVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp TTTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHhc
Confidence 1134556666666542 4678899999999987643
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.88 E-value=8.3e-07 Score=109.03 Aligned_cols=372 Identities=14% Similarity=0.115 Sum_probs=221.0
Q ss_pred hHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchh-----h--Hhhh
Q 040316 73 AAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVD-----L--ARDL 145 (957)
Q Consensus 73 ~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpe-----L--a~~L 145 (957)
+...+++.+.+++...++.. +.+..+. .+.++..=++..|.+=|.+.++.+|..|+.+|++|...+ + ...+
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a-~~~l~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAV-VNLINYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ----------CCSCHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred cHHHHHHHhcCccHHHHHHH-HHHHHhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 44667777777765554421 1111111 123444455667777777889999999999999886522 1 1245
Q ss_pred HHHHHHhhhh---h-----h---HHH---------------HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC---c-
Q 040316 146 TPEVFTLLSS---N-----A---VRV---------------CFKRLVENLESSEPVILSAVVGVFCELCLKDPRS---Y- 195 (957)
Q Consensus 146 ~~~V~klL~~---~-----A---vR~---------------~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~---~- 195 (957)
++.+.+.|.+ . | ++. +++.|.++|.+.++.|...|+.+|..|+...+.. +
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 6666666653 1 1 111 2567888999999999999999999999875442 1
Q ss_pred -cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-----HHHHHHHHHhhcCCcchHHHHHHHHHHhh--cCCc
Q 040316 196 -LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-----RVVEPICEFMRRTEAKSLLFECIRTVLSS--LSEY 267 (957)
Q Consensus 196 -l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-----kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~--l~~~ 267 (957)
...+|.|+++|.. .+.-.+-..+..|..++...+.... ..++.+..+++......+...+..++... .+..
T Consensus 274 ~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 274 LAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred HcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 2457888888875 3333344455566655544433222 23566777776644333333344433322 1111
Q ss_pred -HHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH--HHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcc--
Q 040316 268 -ESAVK-LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW--AVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES-- 341 (957)
Q Consensus 268 -~~li~-l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~--~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~-- 341 (957)
..++. -++..|..+|.+.++.++.-++.+|..|+...+. .+..-...++..|+++|..+|..|+..|..|+...
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 22222 3567888888888889999999999999865432 23445667777889999999999999999998753
Q ss_pred cHHH-----HHHHHHHHhhhc-C-hHHHHHHHHHHHHHHhhhhccc-----ccchHHHHHHHHHhhccCCc-chHHHHHH
Q 040316 342 NVAE-----ISRVLINYALKS-D-PEFCNQILGSILSTCCRNLYEV-----IVDFDWYASLLGEMVRIPHC-QKGEEIEH 408 (957)
Q Consensus 342 Nv~~-----IV~ELl~yl~~s-D-~~~r~elI~aI~~ic~~~~y~~-----~~dfeWyvdvLl~Ll~~~~~-~v~~eI~~ 408 (957)
|... .+..|+..+... + ...+..++.+|+.+|... .+. .-.....+..|++++..... .+..++..
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~-~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH-QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 3332 456777777763 3 388999999998887532 110 00012346788888887654 66777777
Q ss_pred HHHHHHHhcCcchH-----HHHHHHHHHhcCCcccCCCchHHHHHHHhhhhcc
Q 040316 409 QIIDIAMRVKDVRP-----ALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGE 456 (957)
Q Consensus 409 ~L~dIi~rvp~ir~-----~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGE 456 (957)
.|.++... +..+. .++..++.+|.+ ....+.+.++|.+|.
T Consensus 512 aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~aa~al~n 556 (780)
T 2z6g_A 512 LIRNLALC-PANHAPLREQGAIPRLVQLLVR-------AHQDTQRRTSMGGTQ 556 (780)
T ss_dssp HHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH-------HHHHHHHTTC-----
T ss_pred HHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh-------cchhHHHHHhhcccc
Confidence 88888752 22222 244555555532 134566677777765
No 21
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.87 E-value=7.5e-07 Score=108.44 Aligned_cols=407 Identities=13% Similarity=0.119 Sum_probs=232.0
Q ss_pred HHHHhhcCCCccchhhhHHHHHhhcCCC-chHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchh-h-HhhhHHHHHHh
Q 040316 76 HAVEVMSSPQFFYKKIGYHAVTQSFNDD-TPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVD-L-ARDLTPEVFTL 152 (957)
Q Consensus 76 ~VVelmsS~~~~~KRlGYLaas~~~~~~-~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpe-L-a~~L~~~V~kl 152 (957)
++++...|++-..|+-+--++.++...+ ++......+.+.. .+.++.+|..|.-.|.+..... - .....+.--..
T Consensus 5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhC--CCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 4455555666666666655554433211 3333333344432 1245777777777766643210 0 00000000011
Q ss_pred hhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcC-C-CCccCchHHHHHHHhhcC-ChHHHHHHHHHHHhhccC-
Q 040316 153 LSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKD-P-RSYLPLAPEFYKILVDSK-NNWLLIKVLKIFAKLATL- 228 (957)
Q Consensus 153 L~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n-p-~~~l~Lap~L~~iL~~~~-npWlqIkILkLL~~l~p~- 228 (957)
+..+....+-..+.+.|.+.++.+ ..++.++.+|+... | ..|..+.|.++..+.+.. ++=..-..++.|..++..
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 111111122334667788888888 88888888887754 3 457778898988886532 554555566666665542
Q ss_pred ChH----HHhHHHHHHHHHhhcCC-cchHHHHHHHHHHhhcCCc------HHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 040316 229 EPR----LAKRVVEPICEFMRRTE-AKSLLFECIRTVLSSLSEY------ESAVKLAVVKVREFLVDDDPNLKYLGLQAL 297 (957)
Q Consensus 229 ep~----L~~kLl~~L~~lL~~t~-a~SVLyE~I~~Ii~~l~~~------~~li~l~v~~L~~fL~ssDpNlrYvaL~~L 297 (957)
.+. ....+++.+...+.... +..+-..+++++..+.... ......++..+...+.+.++.+|..++.+|
T Consensus 162 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l 241 (876)
T 1qgr_A 162 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241 (876)
T ss_dssp CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 222 23345566666665531 4566677777665432111 111123566666677788899999999999
Q ss_pred HHHhhhChHHHhhhhH-hhc----ccccCCCHHHHHHHHHHHhhhcCcc---------------------------cHHH
Q 040316 298 SIIAPKHLWAVLENKD-FVI----KSLSDGDYNIKLESLRLLMSMVSES---------------------------NVAE 345 (957)
Q Consensus 298 ~~Iv~~~p~~v~~h~~-~Il----~cL~D~D~sIR~~ALeLL~~Lvne~---------------------------Nv~~ 345 (957)
..++..+|..+.+|.. .++ .++.|+|..+|..+++.+..++... .+..
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (876)
T 1qgr_A 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (876)
T ss_dssp HHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHH
Confidence 9999999887777665 443 4567888999999999998887532 2355
Q ss_pred HHHHHHHHhhhc-------ChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcC
Q 040316 346 ISRVLINYALKS-------DPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVK 418 (957)
Q Consensus 346 IV~ELl~yl~~s-------D~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp 418 (957)
++..++..+... +...|..+...+..++.... + .-....+..+...+......+.......+..++...+
T Consensus 322 ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~--~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 398 (876)
T 1qgr_A 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D--DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (876)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-G--GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-H--hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC
Confidence 666666666532 33567777777766655321 1 1122344444444444333344444445544443222
Q ss_pred -c-ch---HHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCC-------CHHHHHHHHhcccccCCCHHHHHH
Q 040316 419 -D-VR---PALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSR-------NPFELMEALLQPRTNLLLPSIRAV 486 (957)
Q Consensus 419 -~-ir---~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~-------~p~~iL~~LL~~~~~~es~~Vq~~ 486 (957)
+ +. ..++..+...+.| ..+.+...++|.+|.|+.... .-..++..++. .+.. ++.||..
T Consensus 399 ~~~~~~~~~~~l~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~-~l~~-~~~v~~~ 469 (876)
T 1qgr_A 399 PSQLKPLVIQAMPTLIELMKD-------PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE-GLSA-EPRVASN 469 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHH-HTTS-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHH-HHcC-CHHHHHH
Confidence 1 11 2234444445544 246788999999999876532 23456666554 2333 4888888
Q ss_pred HHHHHHHHHHH
Q 040316 487 YVQSVFKVLIF 497 (957)
Q Consensus 487 iLtAl~Klf~~ 497 (957)
.+.++..+...
T Consensus 470 a~~al~~l~~~ 480 (876)
T 1qgr_A 470 VCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.85 E-value=2.4e-06 Score=102.11 Aligned_cols=317 Identities=12% Similarity=0.063 Sum_probs=198.9
Q ss_pred CCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----
Q 040316 121 SNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY----- 195 (957)
Q Consensus 121 ~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~----- 195 (957)
.++.++..|+.+|.++.... +....+... -+++.|.++|.+.++.|...|+.+|..++...+...
T Consensus 69 ~~~~~~~~A~~~L~~Ls~~~-------~~~~~i~~~---g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~ 138 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSHHR-------EGLLAIFKS---GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 138 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSH-------HHHHHHHTT---THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCh-------hhHHHHHHc---CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence 36777777777777654421 111111110 246778899999999999999999999998754321
Q ss_pred cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-----HHHHHHHHHhhcCCcchHHHHHHHHHHhhcC--Cc-
Q 040316 196 LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-----RVVEPICEFMRRTEAKSLLFECIRTVLSSLS--EY- 267 (957)
Q Consensus 196 l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-----kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~--~~- 267 (957)
...+|.|+++|.. .++-.+...+..|..++..++.... ..++.+..+++......+...++.++..... ..
T Consensus 139 ~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~ 217 (644)
T 2z6h_A 139 AGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 217 (644)
T ss_dssp TTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHH
T ss_pred CCChHHHHHHHCc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccH
Confidence 3467888888875 3444455556677777754444322 3456777888765545566667766554321 11
Q ss_pred HHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH--HHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc--cc
Q 040316 268 ESAVK-LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW--AVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE--SN 342 (957)
Q Consensus 268 ~~li~-l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~--~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne--~N 342 (957)
..++. -++..|..++.+.++.++..++..|..++...+. .+......++..|.+.|..+|..|...|..|+.. .|
T Consensus 218 ~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~ 297 (644)
T 2z6h_A 218 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297 (644)
T ss_dssp HHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 12222 3577888888888999999999999999875432 3345567778888999999999999999999875 34
Q ss_pred HHH-----HHHHHHHHhhhcC--hHHHHHHHHHHHHHHhhhhcc-ccc---chHHHHHHHHHhhccCCc-chHHHHHHHH
Q 040316 343 VAE-----ISRVLINYALKSD--PEFCNQILGSILSTCCRNLYE-VIV---DFDWYASLLGEMVRIPHC-QKGEEIEHQI 410 (957)
Q Consensus 343 v~~-----IV~ELl~yl~~sD--~~~r~elI~aI~~ic~~~~y~-~~~---dfeWyvdvLl~Ll~~~~~-~v~~eI~~~L 410 (957)
... .+..|+..+...+ ...+..++.+|+.++...... ... -..-.+..|++++..... .+..++...+
T Consensus 298 ~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 377 (644)
T 2z6h_A 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 377 (644)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHH
Confidence 433 4577888887643 689999999999887531100 000 001257788888876643 5666777777
Q ss_pred HHHHHhcCcchH-----HHHHHHHHHhcCCcccCCCchHHHHHHHhhhhcc
Q 040316 411 IDIAMRVKDVRP-----ALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGE 456 (957)
Q Consensus 411 ~dIi~rvp~ir~-----~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGE 456 (957)
.++... +..+. .++..++.+|.+ ....+.+.++|.++.
T Consensus 378 ~nLa~~-~~~~~~i~~~~~i~~Lv~lL~~-------~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 378 RNLALC-PANHAPLREQGAIPRLVQLLVR-------AHQDTQRRTSMGGTQ 420 (644)
T ss_dssp HHHTTS-GGGHHHHHHTTHHHHHHHHHHH-------HHHHHTTC-------
T ss_pred HHHccC-HHHHHHHHHcCCHHHHHHHHhc-------cchhhhhHhhhcccc
Confidence 777643 22222 234455555532 234566677787775
No 23
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.84 E-value=3.2e-06 Score=98.56 Aligned_cols=333 Identities=11% Similarity=0.055 Sum_probs=214.2
Q ss_pred cchhHHHHHHhhcCCCccchhhhHHHHHhhc--CCCchHHHH----HHHHHHHHhc-CCCHHHHHHHHHhhccCC--chh
Q 040316 70 MSFAAFHAVEVMSSPQFFYKKIGYHAVTQSF--NDDTPVILL----ITNQLRKDLN-SSNQFEVSLALECLSRIG--NVD 140 (957)
Q Consensus 70 mS~~~f~VVelmsS~~~~~KRlGYLaas~~~--~~~~dlllL----atNtLkKDL~-s~Np~vr~LALr~Ls~I~--tpe 140 (957)
..|..-++|+.+.|++...+.-+--++-.++ +.+|.+-.+ ++..|-+=|. +.++.++..|..+|++|. +++
T Consensus 55 ~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 3456778888888888777766655554333 234432111 2455556665 456777777777777764 343
Q ss_pred hHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC-----ccCchHHHHHHHhhc----CC
Q 040316 141 LARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRS-----YLPLAPEFYKILVDS----KN 211 (957)
Q Consensus 141 La~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~-----~l~Lap~L~~iL~~~----~n 211 (957)
....+. .. -++|.|..+|.++++.|...|+.+|..|+...+.. -...++.+..+|... ..
T Consensus 135 ~~~~vv-------~~----GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~ 203 (510)
T 3ul1_B 135 QTKAVV-------DG----GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203 (510)
T ss_dssp HHHHHH-------HT----THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred HHHHHH-------HC----CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh
Confidence 332111 11 24678889999999999999999999999876541 123567788887642 22
Q ss_pred hHHHHHHHHHHHhhccCC-----hHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHh
Q 040316 212 NWLLIKVLKIFAKLATLE-----PRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVK-----LAVVKVREF 281 (957)
Q Consensus 212 pWlqIkILkLL~~l~p~e-----p~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~f 281 (957)
...+-.+...+..++... -.....+++.|..++.+ ...-|...++.++.......+...+ -++..|..+
T Consensus 204 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence 233334445555555432 12335678888888876 5567777888777665443333322 256778889
Q ss_pred hcCCCchHHHHHHHHHHHHhhhChHH----Hh-hhhHhhcccccCCCHHHHHHHHHHHhhhcC--cccHHH-----HHHH
Q 040316 282 LVDDDPNLKYLGLQALSIIAPKHLWA----VL-ENKDFVIKSLSDGDYNIKLESLRLLMSMVS--ESNVAE-----ISRV 349 (957)
Q Consensus 282 L~ssDpNlrYvaL~~L~~Iv~~~p~~----v~-~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~-----IV~E 349 (957)
|.+.++.++.-++.+|..|+...+.. +. .-...+..+|.+++..||..|.-.|..|+. +.+... ++..
T Consensus 283 L~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~ 362 (510)
T 3ul1_B 283 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 362 (510)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred hcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHH
Confidence 99999999999999999998765432 21 134567778899999999999999999974 333333 4567
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHHhhhhcccccc--hHHHHHHHHHhhccCCcchHHHHHHHHHHHH
Q 040316 350 LINYALKSDPEFCNQILGSILSTCCRNLYEVIVD--FDWYASLLGEMVRIPHCQKGEEIEHQIIDIA 414 (957)
Q Consensus 350 Ll~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~d--feWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi 414 (957)
|...+...+.+.+.+++.+|..+|.....+.... -.=++..|++|+......+...+...|.+|+
T Consensus 363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 363 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8888888999999999999998876422110000 0113566777776655544444444444444
No 24
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.84 E-value=3.1e-06 Score=108.21 Aligned_cols=263 Identities=11% Similarity=0.132 Sum_probs=148.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC----C---cchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCch-HH
Q 040316 36 AIEEIRREIKSTDLPTKSAALRKLSYLSSLHGA----D---MSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTP-VI 107 (957)
Q Consensus 36 elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~----D---mS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~d-ll 107 (957)
.+..+-..+.++|...|..|+..|.- .. ... + .......+++.+.+++...|+.+..++..++..-++ ..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~-~l-~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMT-EL-QKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHH-HT-SSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHH-HH-cccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45566677888888888888777664 22 111 1 224556677788889999999999988887754433 34
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHH-HhhhhhhHHHHHHHHHhhhcC-CChhHHHHHHHHHH
Q 040316 108 LLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVF-TLLSSNAVRVCFKRLVENLES-SEPVILSAVVGVFC 185 (957)
Q Consensus 108 lLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~-klL~~~AvR~~~~kL~elL~D-~D~sVv~AAv~vL~ 185 (957)
--+.+.+.+-|.++++.+|..|..+|+.|.. .+.+.-. ..........++|.|.+.+.| +++.+...|+.++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~-----~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIG-----ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHH-----HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-----hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 4566777888899999999888888876542 1111100 000001123445666677774 77888888888888
Q ss_pred HhhhcCCCCccCchHHHHHHHhh---cCChHHHHHHHHHHHhhccCCh-HHHhHHHHHHHHHhhcCC---cchHHHHHHH
Q 040316 186 ELCLKDPRSYLPLAPEFYKILVD---SKNNWLLIKVLKIFAKLATLEP-RLAKRVVEPICEFMRRTE---AKSLLFECIR 258 (957)
Q Consensus 186 EI~~~np~~~l~Lap~L~~iL~~---~~npWlqIkILkLL~~l~p~ep-~L~~kLl~~L~~lL~~t~---a~SVLyE~I~ 258 (957)
+++...+..+.+..+.++..|.. ..+++.+...++.|+.+...-+ .....+++.+.+.+.... ...-.++|+.
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 88877665544444555544432 3667888888888777765422 222234444444443321 1122355555
Q ss_pred HHHhhcCCc-HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh
Q 040316 259 TVLSSLSEY-ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL 305 (957)
Q Consensus 259 ~Ii~~l~~~-~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p 305 (957)
.+....+.. ...+..++..+...+.+.++.+|-.++.++..++...+
T Consensus 240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 444432110 00011233333333344455555555555555554443
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.83 E-value=3.9e-06 Score=96.19 Aligned_cols=360 Identities=11% Similarity=0.061 Sum_probs=217.3
Q ss_pred HHHHHHhhcCCCccchhhhHHHHHhhcCCCchH-HHH----HHHHHHHHhcC-CCHHHHHHHHHhhccCCchhhHhhhHH
Q 040316 74 AFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPV-ILL----ITNQLRKDLNS-SNQFEVSLALECLSRIGNVDLARDLTP 147 (957)
Q Consensus 74 ~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dl-llL----atNtLkKDL~s-~Np~vr~LALr~Ls~I~tpeLa~~L~~ 147 (957)
....++++.+++...+.-+-.++..+...++.. .++ ++..|.+-|.+ +++.++-.|+.+|.++...+
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~------- 91 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR------- 91 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-------
Confidence 445566777777776666666665555433221 111 23444444433 36666767777666644321
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHH
Q 040316 148 EVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIF 222 (957)
Q Consensus 148 ~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL 222 (957)
+....+... ..++.|.++|.++|+.|...|+.+|..++..++..- ...+|.|.++|.. .++-.+......|
T Consensus 92 ~~~~~i~~~---g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L 167 (529)
T 1jdh_A 92 EGLLAIFKS---GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHT---THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHH
T ss_pred hhHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 111111110 246778899999999999999999999998754321 2456888888865 4444555556677
Q ss_pred HhhccCChHHHh-----HHHHHHHHHhhcCCcchHHHHHHHHHHhhcC--Cc-HHHH-HHHHHHHHHhhcCCCchHHHHH
Q 040316 223 AKLATLEPRLAK-----RVVEPICEFMRRTEAKSLLFECIRTVLSSLS--EY-ESAV-KLAVVKVREFLVDDDPNLKYLG 293 (957)
Q Consensus 223 ~~l~p~ep~L~~-----kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~--~~-~~li-~l~v~~L~~fL~ssDpNlrYva 293 (957)
..++..++.... ..++.+..+++......+...+..++..... .. ..++ ..++..|..++.+.++.++.-+
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a 247 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHH
Confidence 777665544332 2356677777765545555556665444321 11 1222 2367788888888899999999
Q ss_pred HHHHHHHhhhCh--HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCc--ccHHH-----HHHHHHHHhhhc--ChHHH
Q 040316 294 LQALSIIAPKHL--WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSE--SNVAE-----ISRVLINYALKS--DPEFC 362 (957)
Q Consensus 294 L~~L~~Iv~~~p--~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne--~Nv~~-----IV~ELl~yl~~s--D~~~r 362 (957)
+..|..++...+ ..+......++..+.++|..+|..|...|..|+.. +|... .+..|+..+... +...+
T Consensus 248 ~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 248 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 999999986543 23345567778888999999999999999999874 34443 356677777653 36888
Q ss_pred HHHHHHHHHHHhhhhcccccchH--------HHHHHHHHhhccCCc-chHHHHHHHHHHHHHhcCcchH-----HHHHHH
Q 040316 363 NQILGSILSTCCRNLYEVIVDFD--------WYASLLGEMVRIPHC-QKGEEIEHQIIDIAMRVKDVRP-----ALVHVC 428 (957)
Q Consensus 363 ~elI~aI~~ic~~~~y~~~~dfe--------WyvdvLl~Ll~~~~~-~v~~eI~~~L~dIi~rvp~ir~-----~av~~l 428 (957)
..++.+++.++..+ ++ +.. -.+..|++++..... .+..++...+.++... +..+. .++..+
T Consensus 328 ~~a~~~L~nl~~~~-~~---~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L 402 (529)
T 1jdh_A 328 EPAICALRHLTSRH-QE---AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRL 402 (529)
T ss_dssp HHHHHHHHHHTSSS-TT---HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHcCC-ch---HHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHH
Confidence 99999998886531 11 101 136677888876653 5666777777777753 32232 234455
Q ss_pred HHHhcCCcccCCCchHHHHHHHhhhhcc
Q 040316 429 RNLLIDPALLGNPFLHRILSAAAWVSGE 456 (957)
Q Consensus 429 ~~lL~d~~~l~~~~~~~~l~a~aWIlGE 456 (957)
+.+|.+ ....+...++|.++.
T Consensus 403 ~~ll~~-------~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 403 VQLLVR-------AHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHH-------HHHHHC---------
T ss_pred HHHHHH-------HhHHHHHHHhcccCc
Confidence 555532 245677889998886
No 26
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.78 E-value=5.8e-07 Score=91.13 Aligned_cols=206 Identities=15% Similarity=0.186 Sum_probs=168.1
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHH
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPI 240 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L 240 (957)
+.+.+...|+|+--.|..+|+.++..+....|+.|.++...|+-++..+-.=-+.-.|=+-|+.++...|++.+.+++.+
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~l 112 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVL 112 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHH
Confidence 45678888999999999999999999999999999999999999988765555556777888888888999888888777
Q ss_pred HHHhhcC-----CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhh
Q 040316 241 CEFMRRT-----EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFV 315 (957)
Q Consensus 241 ~~lL~~t-----~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~I 315 (957)
..=.+-. .+++-++|-|- ..+++++..++.-+..+++|+|..-|.++|.-+..|...++..+.++...+
T Consensus 113 fanyrigd~kikIn~~yaLeeIa------ranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL 186 (253)
T 2db0_A 113 FANYRIGDEKTKINVSYALEEIA------KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRI 186 (253)
T ss_dssp HHHSCCCSHHHHHHHHHHHHHHH------HHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHH
T ss_pred HHHHhcCCccceecHHHHHHHHH------HhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHH
Confidence 6443221 23444444322 235888999999999999999999999999999999999999999999999
Q ss_pred cccccCCCHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHH
Q 040316 316 IKSLSDGDYNIKLESLRLLMSMVS--ESNVAEISRVLINYALKSDPEFCNQILGSILSTC 373 (957)
Q Consensus 316 l~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic 373 (957)
+.+|+|.|.-+|.-|.+.|..++. +. +..|+..-++-+.+.......++..+++.+.
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864 44 7888888888888777777776666665554
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.78 E-value=6.7e-06 Score=101.12 Aligned_cols=337 Identities=12% Similarity=0.111 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC-c-------chhHHHHHHhhcCCCccchhhhHHHHHhhcCCC
Q 040316 32 FISKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGAD-M-------SFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDD 103 (957)
Q Consensus 32 ~I~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~D-m-------S~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~ 103 (957)
|-..+-.-|+..|...+...+..|++-+..+. .|-. + .-+...++.+++|++...++.++.++......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~--~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~- 320 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALL--NGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK- 320 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH--SSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHh--cCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-
Confidence 33334455888899999999999999888753 4652 2 12345667789999999999999888875543
Q ss_pred chHHH----HHHHHHHHHhcCCCHHHHHHHHHhhccCCc--------hhh----HhhhHHHHHHhhhhh---------hH
Q 040316 104 TPVIL----LITNQLRKDLNSSNQFEVSLALECLSRIGN--------VDL----ARDLTPEVFTLLSSN---------AV 158 (957)
Q Consensus 104 ~dlll----LatNtLkKDL~s~Np~vr~LALr~Ls~I~t--------peL----a~~L~~~V~klL~~~---------Av 158 (957)
++..- .-+..|.+=+.+.++.++..|+-+||++.+ +.+ .+.+++.+.++|.++ |+
T Consensus 321 ~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Av 400 (810)
T 3now_A 321 KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAA 400 (810)
T ss_dssp HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 43222 234667777778889999999999999852 222 245677777777762 11
Q ss_pred ------------H-------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC-----------cc------------
Q 040316 159 ------------R-------VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRS-----------YL------------ 196 (957)
Q Consensus 159 ------------R-------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~-----------~l------------ 196 (957)
| -++|+|.++|...|+.++..|+.+|..|+...... |.
T Consensus 401 eaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 401 DGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 1 14688999999999999999999999999843210 10
Q ss_pred --------------CchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH-----HHHHHHHHhhcCCcchHHHHHH
Q 040316 197 --------------PLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR-----VVEPICEFMRRTEAKSLLFECI 257 (957)
Q Consensus 197 --------------~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k-----Ll~~L~~lL~~t~a~SVLyE~I 257 (957)
..+|.|+++|.. .++=.|-.....|..++. ++..... .+++|..++++. ...+...++
T Consensus 481 ~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa 557 (810)
T 3now_A 481 VDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG-TEKGKRHAT 557 (810)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHH
Confidence 235777777764 778888888889988875 4443333 457888888763 345566666
Q ss_pred HHHHhhc-CCcHHH------HHHHHHHHHHhhcCC-CchHHHHHHHHHHHHhhhChH----HHhh-hhHhhcccccCCCH
Q 040316 258 RTVLSSL-SEYESA------VKLAVVKVREFLVDD-DPNLKYLGLQALSIIAPKHLW----AVLE-NKDFVIKSLSDGDY 324 (957)
Q Consensus 258 ~~Ii~~l-~~~~~l------i~l~v~~L~~fL~ss-DpNlrYvaL~~L~~Iv~~~p~----~v~~-h~~~Il~cL~D~D~ 324 (957)
.++.... ..+++. ..-++..|..+|.+. +...++-|+.+|..|+...+. ++.. ....++.++.+++.
T Consensus 558 ~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~ 637 (810)
T 3now_A 558 QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL 637 (810)
T ss_dssp HHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCT
T ss_pred HHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCH
Confidence 6665431 112222 123678888888644 334568899999999876432 2322 46778888888899
Q ss_pred HHHHHHHHHHhhhcCcccH-HH------HHHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 325 NIKLESLRLLMSMVSESNV-AE------ISRVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 325 sIR~~ALeLL~~Lvne~Nv-~~------IV~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
.|++.|+++|..|+..... .. .+.-|..++...+...+.+++.+|..++.
T Consensus 638 ~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 638 YLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp THHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999875332 22 44567777888889999999999988876
No 28
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.75 E-value=3.3e-05 Score=93.80 Aligned_cols=337 Identities=9% Similarity=0.040 Sum_probs=199.5
Q ss_pred cchhHHHHHHhhcCC-CccchhhhHHHHHhhcC---CC----chHHHHHHHHHHHHhcCC--CHHHHHHHHHhhccCCch
Q 040316 70 MSFAAFHAVEVMSSP-QFFYKKIGYHAVTQSFN---DD----TPVILLITNQLRKDLNSS--NQFEVSLALECLSRIGNV 139 (957)
Q Consensus 70 mS~~~f~VVelmsS~-~~~~KRlGYLaas~~~~---~~----~dlllLatNtLkKDL~s~--Np~vr~LALr~Ls~I~tp 139 (957)
...+...+++++.++ +...|..+...+..++. +. ....--+...+.+=+.++ ++.+|..|+++++.+..-
T Consensus 132 w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 132 WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334667777888887 76666655444443332 11 112223344555556776 889999999999875310
Q ss_pred hhHhhhHHHHHHhhhhh-hHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchH-HHHHHHh---hcCChHH
Q 040316 140 DLARDLTPEVFTLLSSN-AVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAP-EFYKILV---DSKNNWL 214 (957)
Q Consensus 140 eLa~~L~~~V~klL~~~-AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap-~L~~iL~---~~~npWl 214 (957)
+. . .+... ....+++.+.+.+.+.++.|..+|+.++..++...|..+.+..+ .++.++. ...++=.
T Consensus 212 --~~---~----~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 282 (861)
T 2bpt_A 212 --IK---N----NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKV 282 (861)
T ss_dssp --CH---H----HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHH
T ss_pred --HH---H----HccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 00 0 00000 01123444556778899999999999999999888765544333 4444332 2344445
Q ss_pred HHHHHHHHHhhccCC-----------------hHH----HhHHHHHHHHHhhcC------CcchHHHHHHHHHHh---hc
Q 040316 215 LIKVLKIFAKLATLE-----------------PRL----AKRVVEPICEFMRRT------EAKSLLFECIRTVLS---SL 264 (957)
Q Consensus 215 qIkILkLL~~l~p~e-----------------p~L----~~kLl~~L~~lL~~t------~a~SVLyE~I~~Ii~---~l 264 (957)
....++++..++... +.. ...+++.+...|... ....+-..+..++.. .+
T Consensus 283 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~ 362 (861)
T 2bpt_A 283 ASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc
Confidence 555555555544321 111 133444454445431 113444444443322 11
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhC-hHHHhhhh----HhhcccccCCCHHHHHHHHHHHhhhcC
Q 040316 265 SEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKH-LWAVLENK----DFVIKSLSDGDYNIKLESLRLLMSMVS 339 (957)
Q Consensus 265 ~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~-p~~v~~h~----~~Il~cL~D~D~sIR~~ALeLL~~Lvn 339 (957)
. +..+..++..+...+.+.+...|..++.++..|+... +..+.+|. ..++.+++|+++.+|..++..+..++.
T Consensus 363 ~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 363 G--NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp G--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred c--HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 2 2334456666777777888999999999999998654 45555554 445667889999999999888776662
Q ss_pred --------cccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhh----cccccchHHHHHHHHHhhccCC--cchHHH
Q 040316 340 --------ESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNL----YEVIVDFDWYASLLGEMVRIPH--CQKGEE 405 (957)
Q Consensus 340 --------e~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~----y~~~~dfeWyvdvLl~Ll~~~~--~~v~~e 405 (957)
...+..++..|+..+.+. +..+..++.++..+|.... ....+-+.-.+..|+.++.... ..+...
T Consensus 441 ~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~ 519 (861)
T 2bpt_A 441 SVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS 519 (861)
T ss_dssp HHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHH
Confidence 456889999999998764 7888888888877776421 1111212223455555554322 345555
Q ss_pred HHHHHHHHHHhcC
Q 040316 406 IEHQIIDIAMRVK 418 (957)
Q Consensus 406 I~~~L~dIi~rvp 418 (957)
+...+..++...+
T Consensus 520 a~~al~~l~~~~~ 532 (861)
T 2bpt_A 520 AFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcc
Confidence 6666666666554
No 29
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.74 E-value=2.5e-05 Score=94.98 Aligned_cols=338 Identities=10% Similarity=0.080 Sum_probs=198.8
Q ss_pred CcchhHHHHHHhhcCC--CccchhhhHHHHHhhcCCC-c----hHHHHHHHHHHHHhcCC--CHHHHHHHHHhhccCCch
Q 040316 69 DMSFAAFHAVEVMSSP--QFFYKKIGYHAVTQSFNDD-T----PVILLITNQLRKDLNSS--NQFEVSLALECLSRIGNV 139 (957)
Q Consensus 69 DmS~~~f~VVelmsS~--~~~~KRlGYLaas~~~~~~-~----dlllLatNtLkKDL~s~--Np~vr~LALr~Ls~I~tp 139 (957)
....+...++.++.++ +...|+.+...+..++..- + ...-.+...+.+=+.++ ++.+|..|+++++.+..-
T Consensus 125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445667777788777 6666666655555443321 1 12223344455556665 678888899888876431
Q ss_pred hhHhhhHHHHHHhhhhhhHH-HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchH-HHHHHHhh---cCChHH
Q 040316 140 DLARDLTPEVFTLLSSNAVR-VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAP-EFYKILVD---SKNNWL 214 (957)
Q Consensus 140 eLa~~L~~~V~klL~~~AvR-~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap-~L~~iL~~---~~npWl 214 (957)
+.+. +.....+ .+++.+.+.+.+.+..|..+|+.++..++...++.+.+.++ .++..+.. ..++=.
T Consensus 205 -----~~~~----~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 275 (876)
T 1qgr_A 205 -----TKAN----FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV 275 (876)
T ss_dssp -----CHHH----HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHH
T ss_pred -----HHHH----HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 1111 0011111 13445566778889999999999999999988775433333 34433321 234444
Q ss_pred HHHHHHHHHhhccCC---------------------hH----HHhHHHHHHHHHhhcC------CcchHHHH---HHHHH
Q 040316 215 LIKVLKIFAKLATLE---------------------PR----LAKRVVEPICEFMRRT------EAKSLLFE---CIRTV 260 (957)
Q Consensus 215 qIkILkLL~~l~p~e---------------------p~----L~~kLl~~L~~lL~~t------~a~SVLyE---~I~~I 260 (957)
....+.++..++... .. ....+++.+...+... ....+-.. |+..+
T Consensus 276 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 444454444443211 01 1134555555555421 12233333 33333
Q ss_pred HhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh-HHHhhh----hHhhcccccCCCHHHHHHHHHHHh
Q 040316 261 LSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL-WAVLEN----KDFVIKSLSDGDYNIKLESLRLLM 335 (957)
Q Consensus 261 i~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p-~~v~~h----~~~Il~cL~D~D~sIR~~ALeLL~ 335 (957)
..... +..+..++..+...+.+.++.+|+.++.++..|+...+ ..+.+| ...++.+++|++..+|..|+..|.
T Consensus 356 ~~~~~--~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 356 ATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp HHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHCc--HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33222 23345566677777788899999999999999987543 544444 455667789999999999999998
Q ss_pred hhcC--------cccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhh--------------cccccchHHHHHHHHH
Q 040316 336 SMVS--------ESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNL--------------YEVIVDFDWYASLLGE 393 (957)
Q Consensus 336 ~Lvn--------e~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~--------------y~~~~dfeWyvdvLl~ 393 (957)
.++. ...+..++..|+..+.+ ++.++..++.++..+|.... ..+.+-+.-.+..|+.
T Consensus 434 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~ 512 (876)
T 1qgr_A 434 RICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512 (876)
T ss_dssp HHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHH
T ss_pred HHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHH
Confidence 8774 36788999999998877 47888888888888876421 0122222334445555
Q ss_pred hhccCC---cchHHHHHHHHHHHHHhcC
Q 040316 394 MVRIPH---CQKGEEIEHQIIDIAMRVK 418 (957)
Q Consensus 394 Ll~~~~---~~v~~eI~~~L~dIi~rvp 418 (957)
++.... ..+...+...+..++...+
T Consensus 513 ~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 513 TTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp HTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred HHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 554321 2344455666666666554
No 30
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.72 E-value=3.9e-06 Score=97.77 Aligned_cols=325 Identities=12% Similarity=0.083 Sum_probs=209.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC-c-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRS-Y-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR 235 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~-~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k 235 (957)
++.+++.|.+.|+.+...|+..+-.+..+.... . ...+|.|+++|....++-.|......|+.++..+++..+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456777777888888888888777765433221 0 1358999999987778888988999999988766654443
Q ss_pred -----HHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHH-----HHHHHHHhhcCCCch-----HHHHHHHHHHHH
Q 040316 236 -----VVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKL-----AVVKVREFLVDDDPN-----LKYLGLQALSII 300 (957)
Q Consensus 236 -----Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l-----~v~~L~~fL~ssDpN-----lrYvaL~~L~~I 300 (957)
.++.|..+|++ ....|...|+.++.....+.+..... ++..|..+|.+.+.+ +...+..++..+
T Consensus 139 vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 139 VVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 45678888876 56778888888777654444443322 456777787655433 344556666666
Q ss_pred hhhC-h----HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCccc--HHH-----HHHHHHHHhhhcChHHHHHHHHH
Q 040316 301 APKH-L----WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESN--VAE-----ISRVLINYALKSDPEFCNQILGS 368 (957)
Q Consensus 301 v~~~-p----~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~N--v~~-----IV~ELl~yl~~sD~~~r~elI~a 368 (957)
.... + ..+..-...+..+|.++|..++..|+..|..|+...+ ... ++..|..++...+...+..++.+
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 5432 1 2344556677888999999999999999999986543 222 35778889998999999999999
Q ss_pred HHHHHhhhhcccccc--hHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHH-----HHHHHHHHhcCCcccCCC
Q 040316 369 ILSTCCRNLYEVIVD--FDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPA-----LVHVCRNLLIDPALLGNP 441 (957)
Q Consensus 369 I~~ic~~~~y~~~~d--feWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~-----av~~l~~lL~d~~~l~~~ 441 (957)
|+.++..+.. .... ..-.+..|+.++......+..+..-.+.++....++.+.. ++..++.++.+
T Consensus 298 L~nl~~~~~~-~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~------- 369 (510)
T 3ul1_B 298 IGNIVTGTDE-QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK------- 369 (510)
T ss_dssp HHHHTTSCHH-HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-------
T ss_pred HHHhhcCCHH-HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-------
Confidence 9988753211 0000 0012334555666555666777777888887655443332 34455555543
Q ss_pred chHHHHHHHhhhhccCCCCCCCHHH--------HHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 442 FLHRILSAAAWVSGEYVEFSRNPFE--------LMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 442 ~~~~~l~a~aWIlGEY~~~i~~p~~--------iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
....+.+.++|.++-.+... ++.. .+..|+. -....++.++..+|.++.+++-.
T Consensus 370 ~~~~v~~~Aa~aL~Nl~~~~-~~~~~~~L~~~g~i~~L~~-LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 370 ADFKTQKEAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMN-LLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHTTCHHHHHH-GGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccC-CHHHHHHHHHCCCHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH
Confidence 24678899999998764321 1111 1222222 12345788888899888888644
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.72 E-value=7.4e-06 Score=98.26 Aligned_cols=353 Identities=12% Similarity=0.062 Sum_probs=231.5
Q ss_pred chhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCC--chhhHhhhHHHHHHhhhhh-------hH
Q 040316 88 YKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIG--NVDLARDLTPEVFTLLSSN-------AV 158 (957)
Q Consensus 88 ~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~--tpeLa~~L~~~V~klL~~~-------Av 158 (957)
.+|+.|+.+.- .+-+...+-+ ++ =+.++|...+=++--+++.+. .++++.-+.+.+.+-|+|+ |+
T Consensus 59 l~Kli~l~~~G--~d~s~~~~~v---vk-l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lAL 132 (621)
T 2vgl_A 59 VCKLLFIFLLG--HDIDFGHMEA---VN-LLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLAL 132 (621)
T ss_dssp HHHHHHHHHHS--CCCCSCHHHH---HH-GGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHcC--CCCchhHHHH---HH-HhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 56788876542 2223333333 33 467888877655555555443 3677777778888878772 34
Q ss_pred HH------------HHHHHHhhh--cCCChhHHHHHHHHHHHhhhcCCCCcc--CchHHHHHHHhhcCChHHHHHHHHHH
Q 040316 159 RV------------CFKRLVENL--ESSEPVILSAVVGVFCELCLKDPRSYL--PLAPEFYKILVDSKNNWLLIKVLKIF 222 (957)
Q Consensus 159 R~------------~~~kL~elL--~D~D~sVv~AAv~vL~EI~~~np~~~l--~Lap~L~~iL~~~~npWlqIkILkLL 222 (957)
|. ..+.+..+| .|.+|.|--+|+.++..+...+|+... .+.+.+.++|. ..++-.+...+.+|
T Consensus 133 r~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~-d~d~~V~~~a~~~l 211 (621)
T 2vgl_A 133 HCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN-DQHLGVVTAATSLI 211 (621)
T ss_dssp HHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT-CSCHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC-CCCccHHHHHHHHH
Confidence 32 235677889 899999999999999999999998776 78888988885 58888888888888
Q ss_pred HhhccCChHH----HhHHHHHHHHHhhcC-C-----------cchHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHhhcC-
Q 040316 223 AKLATLEPRL----AKRVVEPICEFMRRT-E-----------AKSLLFECIRTVLSSLS-EYESAVKLAVVKVREFLVD- 284 (957)
Q Consensus 223 ~~l~p~ep~L----~~kLl~~L~~lL~~t-~-----------a~SVLyE~I~~Ii~~l~-~~~~li~l~v~~L~~fL~s- 284 (957)
..+++.+|.. ..++++.+..++..+ . ++=.....++++..+.+ +.++......+.|..++..
T Consensus 212 ~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~ 291 (621)
T 2vgl_A 212 TTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 291 (621)
T ss_dssp HHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 8888877763 334445555555331 1 23344555555444333 2345555555555555421
Q ss_pred --C-----------CchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCccc----HHHHH
Q 040316 285 --D-----------DPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESN----VAEIS 347 (957)
Q Consensus 285 --s-----------DpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~N----v~~IV 347 (957)
. .+-+-|-+..++..+. ..+.++..-...+...|.++|..||..+|+.|..++.... +....
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~ 370 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHI 370 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTH
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 1 1144555555555554 3566666666667677888999999999999999987653 33334
Q ss_pred HHHHHHhh-hcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHHH
Q 040316 348 RVLINYAL-KSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVH 426 (957)
Q Consensus 348 ~ELl~yl~-~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~ 426 (957)
..++..+. +.|..+|...+.-+..+|... +.+-.+..|.+.+......+..+++..+..++.+++......+.
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~------Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~ 444 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCDRS------NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVD 444 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHH
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcChh------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 45555566 788899999888888777542 23346777777777666677888888888899998877777788
Q ss_pred HHHHHhcCCcccCCCchHHHHHHHhhhhccC
Q 040316 427 VCRNLLIDPALLGNPFLHRILSAAAWVSGEY 457 (957)
Q Consensus 427 ~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY 457 (957)
.+.+++.+.. +....++...+.-++...
T Consensus 445 ~Ll~ll~~~~---~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 445 TILNLIRIAG---DYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp HHHHHHHHHG---GGSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhhc---ccchHHHHHHHHHHHhCC
Confidence 8877775321 112334555555555544
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.71 E-value=1.2e-05 Score=94.06 Aligned_cols=323 Identities=12% Similarity=0.077 Sum_probs=202.9
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhhcCCCC-c-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH--
Q 040316 164 RLVENLESSEPVILSAVVGVFCELCLKDPRS-Y-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR-- 235 (957)
Q Consensus 164 kL~elL~D~D~sVv~AAv~vL~EI~~~np~~-~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k-- 235 (957)
.+.+.|.+.|+.+...|+..+..+..+.... . ...+|.|+++|....++-.|......|+.++..++.....
T Consensus 80 ~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 80 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555666777666766666654332221 1 2357888998887777888888888888887766554332
Q ss_pred ---HHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHH-----HHHHHHHhhcCCCch-----HHHHHHHHHHHHhh
Q 040316 236 ---VVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKL-----AVVKVREFLVDDDPN-----LKYLGLQALSIIAP 302 (957)
Q Consensus 236 ---Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l-----~v~~L~~fL~ssDpN-----lrYvaL~~L~~Iv~ 302 (957)
.++.|..++.+ ....|...|+.++.....+++..... ++..|..+|...+.. +.-.+..++..++.
T Consensus 160 ~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 45677777766 55677777877776653333443322 456677777554432 33345556666654
Q ss_pred hC-h----HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCccc--HHH-----HHHHHHHHhhhcChHHHHHHHHHHH
Q 040316 303 KH-L----WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESN--VAE-----ISRVLINYALKSDPEFCNQILGSIL 370 (957)
Q Consensus 303 ~~-p----~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~N--v~~-----IV~ELl~yl~~sD~~~r~elI~aI~ 370 (957)
.. | ..+..-...+..+|.++|..++..|+..|..++...+ ... ++..|..++...+...+..++.+|+
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 32 1 2344556677788899999999999999988886543 232 3467888888889999999999998
Q ss_pred HHHhhhhcccccc--hHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHH-----HHHHHHHHhcCCcccCCCch
Q 040316 371 STCCRNLYEVIVD--FDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPA-----LVHVCRNLLIDPALLGNPFL 443 (957)
Q Consensus 371 ~ic~~~~y~~~~d--feWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~-----av~~l~~lL~d~~~l~~~~~ 443 (957)
.++..+.. .... ..-.+..|+.++......+..+..-.|.++....+..+.. ++..++.+|.+ ..
T Consensus 319 nl~~~~~~-~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-------~~ 390 (529)
T 3tpo_A 319 NIVTGTDE-QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-------AD 390 (529)
T ss_dssp HHTTSCHH-HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS-------SC
T ss_pred HHHccchH-HHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC-------CC
Confidence 88653211 0000 0113456778888777777777888888887655443322 34445555543 24
Q ss_pred HHHHHHHhhhhccCCCCCCCHH---H-----HHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 444 HRILSAAAWVSGEYVEFSRNPF---E-----LMEALLQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 444 ~~~l~a~aWIlGEY~~~i~~p~---~-----iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
..+...++|.++-.+... ++. . .+..|+. -....++.++..+|.++..|+-.
T Consensus 391 ~~v~~~A~~aL~nl~~~~-~~~~~~~l~~~g~i~~L~~-LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMN-LLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHH-GGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHCcCHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH
Confidence 678899999998765321 121 1 1222322 23345788888888888887643
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.68 E-value=1.4e-05 Score=93.48 Aligned_cols=293 Identities=10% Similarity=0.057 Sum_probs=194.9
Q ss_pred chhHHHHHHhhcCCCccchhhhHHHHHhhc--CCCchHHHH----HHHHHHHHhc-CCCHHHHHHHHHhhccCCc--hhh
Q 040316 71 SFAAFHAVEVMSSPQFFYKKIGYHAVTQSF--NDDTPVILL----ITNQLRKDLN-SSNQFEVSLALECLSRIGN--VDL 141 (957)
Q Consensus 71 S~~~f~VVelmsS~~~~~KRlGYLaas~~~--~~~~dlllL----atNtLkKDL~-s~Np~vr~LALr~Ls~I~t--peL 141 (957)
.+...++++.+.|++...+.-+.-++-.++ ..++.+-.+ ++..|-+=|. +.++.++..|..+|++|.. ++-
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 345678888888888877665555554333 333322111 2344455553 4567777777777777643 222
Q ss_pred HhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhc----CCh
Q 040316 142 ARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDS----KNN 212 (957)
Q Consensus 142 a~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~----~np 212 (957)
... .+.. -++|.|..+|.++++.|...|+.+|..|+..++..- ...++.|..+|... ...
T Consensus 155 ~~~-------vv~~----Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~ 223 (529)
T 3tpo_A 155 TKA-------VVDG----GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 223 (529)
T ss_dssp HHH-------HHHT----THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCH
T ss_pred HHH-------HHHC----CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHH
Confidence 211 1111 246778899999999999999999999998766421 23467777777542 223
Q ss_pred HHHHHHHHHHHhhccCC-----hHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhh
Q 040316 213 WLLIKVLKIFAKLATLE-----PRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVK-----LAVVKVREFL 282 (957)
Q Consensus 213 WlqIkILkLL~~l~p~e-----p~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL 282 (957)
..+-.+...+..++... ......+++.|..++.+ ....|...++.++.......+...+ -++..|..+|
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL 302 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh
Confidence 34444555566655432 12345678888888877 4567777777776665443333322 2567788889
Q ss_pred cCCCchHHHHHHHHHHHHhhhChHHH----h-hhhHhhcccccCCCHHHHHHHHHHHhhhcC--cccHHH-----HHHHH
Q 040316 283 VDDDPNLKYLGLQALSIIAPKHLWAV----L-ENKDFVIKSLSDGDYNIKLESLRLLMSMVS--ESNVAE-----ISRVL 350 (957)
Q Consensus 283 ~ssDpNlrYvaL~~L~~Iv~~~p~~v----~-~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~-----IV~EL 350 (957)
.+.++.++.-++.+|..|+..++... . .-...++.+|.+++..||..|.-.|..|+. +.+... ++.-|
T Consensus 303 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L 382 (529)
T 3tpo_A 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 382 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH
Confidence 99999999999999999987654321 1 134566778899999999999999999874 333333 45678
Q ss_pred HHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 351 INYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 351 l~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
...+...+.+.+.+++.+|+.+|..
T Consensus 383 v~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 383 VGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 8888889999999999999988764
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.66 E-value=9.8e-06 Score=92.91 Aligned_cols=431 Identities=13% Similarity=0.063 Sum_probs=252.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCc-------chhHHHHHHhhc-CCCccchhhhHHHHHhhcCCCch
Q 040316 34 SKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADM-------SFAAFHAVEVMS-SPQFFYKKIGYHAVTQSFNDDTP 105 (957)
Q Consensus 34 ~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~Dm-------S~~~f~VVelms-S~~~~~KRlGYLaas~~~~~~~d 105 (957)
...+..+-+.+++.+...+..|+.-|..+. .+.+. .-+...+++++. +++...++.+--++..+... ++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~--~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~ 92 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE 92 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHH--TSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHH--cCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-ch
Confidence 334566667777777777777766555432 12211 124555666665 34666666555555543332 22
Q ss_pred HHHH-----HHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHH
Q 040316 106 VILL-----ITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAV 180 (957)
Q Consensus 106 lllL-----atNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AA 180 (957)
.... ++..|.+=|.++++.++..|+.+|.++...+- .....+.. ..+++.|.++|.+.++.+...+
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~------~~~~~i~~---~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE------GAKMAVRL---AGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT------THHHHHHH---HTHHHHHHHGGGCCCHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc------chHHHHHH---cCCHHHHHHHHhcCCHHHHHHH
Confidence 1111 34466666788888888888888888765310 00011100 1246778889999999999999
Q ss_pred HHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHH-----hHHHHHHHHHhhcCCcc
Q 040316 181 VGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLA-----KRVVEPICEFMRRTEAK 250 (957)
Q Consensus 181 v~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~-----~kLl~~L~~lL~~t~a~ 250 (957)
+.++..++..++..- ...+|.|+++|.+...+-.+....++|..++.. +... ...++.+..++.. ...
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~-~~~ 241 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD-PSQ 241 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTS-SCH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhC-CCh
Confidence 889888887554311 134678888887755554555555666655542 2222 2345667777765 356
Q ss_pred hHHHHHHHHHHhhcCCc--HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHH---Hhh--hhHhhcccccC--
Q 040316 251 SLLFECIRTVLSSLSEY--ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWA---VLE--NKDFVIKSLSD-- 321 (957)
Q Consensus 251 SVLyE~I~~Ii~~l~~~--~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~---v~~--h~~~Il~cL~D-- 321 (957)
.+...++.++....... ......++..|..+|.+.++.++..++.+|..|+...+.. +.. -...++..|.+
T Consensus 242 ~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 77777777665532111 1122457788888888999999999999999998765522 221 23555666654
Q ss_pred CCHHHHHHHHHHHhhhcCcc--c---HHH-----HHHHHHHHhhhcC-hHHHHHHHHHHHHHHhhhhcccccchHH----
Q 040316 322 GDYNIKLESLRLLMSMVSES--N---VAE-----ISRVLINYALKSD-PEFCNQILGSILSTCCRNLYEVIVDFDW---- 386 (957)
Q Consensus 322 ~D~sIR~~ALeLL~~Lvne~--N---v~~-----IV~ELl~yl~~sD-~~~r~elI~aI~~ic~~~~y~~~~dfeW---- 386 (957)
.+..++..|+..|..|+... + ... .+..|...+...+ ...+..++..|..++... ... ..|
T Consensus 322 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~--~~~--~~~~~~~ 397 (529)
T 1jdh_A 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP--ANH--APLREQG 397 (529)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG--GGH--HHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh--hhh--HHHHHcC
Confidence 33789999999999998642 1 112 3466777777665 588999998888877531 111 111
Q ss_pred HHHHHHHhhccCCcchH----------------------HHHHHHHHHHHHhcCcchHH-----HHHHHHHHhcCCcccC
Q 040316 387 YASLLGEMVRIPHCQKG----------------------EEIEHQIIDIAMRVKDVRPA-----LVHVCRNLLIDPALLG 439 (957)
Q Consensus 387 yvdvLl~Ll~~~~~~v~----------------------~eI~~~L~dIi~rvp~ir~~-----av~~l~~lL~d~~~l~ 439 (957)
.+..|++++......+. ..+...+.++.. .++.+.. ++..++.++.+
T Consensus 398 ~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~----- 471 (529)
T 1jdh_A 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS----- 471 (529)
T ss_dssp HHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGC-----
T ss_pred CHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcC-----
Confidence 34556666543211111 122223333322 2222222 23445555543
Q ss_pred CCchHHHHHHHhhhhccCCCCCC--------CHHHHHHHHhcccccCCCHHHHHHHHHHHHHH
Q 040316 440 NPFLHRILSAAAWVSGEYVEFSR--------NPFELMEALLQPRTNLLLPSIRAVYVQSVFKV 494 (957)
Q Consensus 440 ~~~~~~~l~a~aWIlGEY~~~i~--------~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Kl 494 (957)
..++++..++|.+++.+..-. +..+.+..++ ...+++|+.....++.++
T Consensus 472 --~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~----~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 472 --PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL----HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp --SCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG----GCSSHHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHh----cCCCHHHHHHHHHHHHhc
Confidence 246788999999988764211 1223344443 346788888888777664
No 35
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.64 E-value=4.3e-06 Score=85.86 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=164.1
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh--
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-- 234 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-- 234 (957)
++.|.++|.+.++.+...|+.+|..++...+... ...+|.|+++|.+ .++-.+...+..|..++...+....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5678899999999999999999999998776321 2357788888865 5678888999999999887565443
Q ss_pred ---HHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHH-----HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH
Q 040316 235 ---RVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVK-----LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW 306 (957)
Q Consensus 235 ---kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~-----l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~ 306 (957)
..++.+..++++ .+..+...|+.++.......+.... .++..|..+|.+.++.++.-++.+|..|+...+.
T Consensus 83 ~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 356778888876 5577888888877775434443322 3677888889999999999999999999986654
Q ss_pred HHh-----hhhHhhcccccCCCHHHHHHHHHHHhhhcC--cccHHH-----HHHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 307 AVL-----ENKDFVIKSLSDGDYNIKLESLRLLMSMVS--ESNVAE-----ISRVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 307 ~v~-----~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~-----IV~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
... .-...++.++.++|..+|..|+..|..++. +.+... ++..|.+.+...++..+..++.++..++.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 321 245677888999999999999999999985 333433 45788889988999999999999999887
Q ss_pred h
Q 040316 375 R 375 (957)
Q Consensus 375 ~ 375 (957)
.
T Consensus 242 ~ 242 (252)
T 4hxt_A 242 G 242 (252)
T ss_dssp T
T ss_pred C
Confidence 5
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.56 E-value=6.1e-05 Score=89.95 Aligned_cols=433 Identities=13% Similarity=0.058 Sum_probs=253.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCc-------chhHHHHHHhhcCC-CccchhhhHHHHHhhcCCCchHH
Q 040316 36 AIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADM-------SFAAFHAVEVMSSP-QFFYKKIGYHAVTQSFNDDTPVI 107 (957)
Q Consensus 36 elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~Dm-------S~~~f~VVelmsS~-~~~~KRlGYLaas~~~~~~~dll 107 (957)
.+..+.+.+++.+...|..|+.-|-.+.. +.+. .-+...+++++.+. +...++-+--++..+.. +.+..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~--~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~ 91 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSK--KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGL 91 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHT--STTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHC--CChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhH
Confidence 45566677777788888877777766532 2221 12355566777654 66666655444443332 22211
Q ss_pred HH-----HHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHH
Q 040316 108 LL-----ITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVG 182 (957)
Q Consensus 108 lL-----atNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~ 182 (957)
.. ++..|.+=|.++++.++..|+.+|.++.... + .....+.. .-+++.|.++|.+.++.+..+++.
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~--~----~~~~~v~~---~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ--E----GAKMAVRL---AGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--T----THHHHHHH---TTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc--c----hhHHHHHH---CCChHHHHHHHCcCCHHHHHHHHH
Confidence 11 3456666678888999989998888876431 0 00000100 124677888999889999999988
Q ss_pred HHHHhhhcCCCC-----ccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-----HHHHHHHHHhhcCCcchH
Q 040316 183 VFCELCLKDPRS-----YLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-----RVVEPICEFMRRTEAKSL 252 (957)
Q Consensus 183 vL~EI~~~np~~-----~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-----kLl~~L~~lL~~t~a~SV 252 (957)
+|..++..++.. -...+|.|.++|.+...+-.+-..+++|..++. .+.... ..++.+..++.. ....+
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~-~~~~~ 240 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTD-PSQRL 240 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTC-SCHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhc-CCHHH
Confidence 998888654431 123468888888765444333334444444443 222222 245666666765 35667
Q ss_pred HHHHHHHHHhhcCC--cHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHH---Hhh--hhHhhcccccC-CC-
Q 040316 253 LFECIRTVLSSLSE--YESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWA---VLE--NKDFVIKSLSD-GD- 323 (957)
Q Consensus 253 LyE~I~~Ii~~l~~--~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~---v~~--h~~~Il~cL~D-~D- 323 (957)
...++.++...... .......++..|..+|.+.+++++..+..+|..|+...+.. +.. -...++.++.+ ++
T Consensus 241 ~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~ 320 (644)
T 2z6h_A 241 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320 (644)
T ss_dssp HHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCc
Confidence 77777766553211 11123457788888898999999999999999998765432 211 24556666665 33
Q ss_pred HHHHHHHHHHHhhhcCccc----HH------HHHHHHHHHhhhcC-hHHHHHHHHHHHHHHhhhhcccccc--hHHHHHH
Q 040316 324 YNIKLESLRLLMSMVSESN----VA------EISRVLINYALKSD-PEFCNQILGSILSTCCRNLYEVIVD--FDWYASL 390 (957)
Q Consensus 324 ~sIR~~ALeLL~~Lvne~N----v~------~IV~ELl~yl~~sD-~~~r~elI~aI~~ic~~~~y~~~~d--feWyvdv 390 (957)
..++..|+..|..|+.... .+ ..+..|.+.+...+ ..++.+++..|..++.-.. .... ..-.+..
T Consensus 321 ~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~--~~~~i~~~~~i~~ 398 (644)
T 2z6h_A 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--NHAPLREQGAIPR 398 (644)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG--GHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH--HHHHHHHcCCHHH
Confidence 7899999999999986321 11 35667777777664 6899999988887764211 0000 0114555
Q ss_pred HHHhhccCCc----------------------chHHHHHHHHHHHHHhcCcchHH-----HHHHHHHHhcCCcccCCCch
Q 040316 391 LGEMVRIPHC----------------------QKGEEIEHQIIDIAMRVKDVRPA-----LVHVCRNLLIDPALLGNPFL 443 (957)
Q Consensus 391 Ll~Ll~~~~~----------------------~v~~eI~~~L~dIi~rvp~ir~~-----av~~l~~lL~d~~~l~~~~~ 443 (957)
|++++..... .+...+...|.++.. .+..+.. ++..++.+|.+ ..
T Consensus 399 Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~-------~~ 470 (644)
T 2z6h_A 399 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS-------PI 470 (644)
T ss_dssp HHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTC-------SC
T ss_pred HHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcC-------CC
Confidence 6666543210 112223333333332 2222222 24455666643 24
Q ss_pred HHHHHHHhhhhccCCCCCC--------CHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHH
Q 040316 444 HRILSAAAWVSGEYVEFSR--------NPFELMEALLQPRTNLLLPSIRAVYVQSVFKVLI 496 (957)
Q Consensus 444 ~~~l~a~aWIlGEY~~~i~--------~p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~ 496 (957)
+.++..++|.++..+..-+ ...+.|..++ ...+++||.....++.++..
T Consensus 471 ~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll----~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 471 ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL----HSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHT----TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHH----cCCCHHHHHHHHHHHHHHhc
Confidence 6788899999887654200 1223344443 34688899888888877654
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.52 E-value=7.2e-06 Score=86.93 Aligned_cols=249 Identities=8% Similarity=0.028 Sum_probs=164.1
Q ss_pred HHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCch-hhHhhhHHHHHHhh
Q 040316 75 FHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNV-DLARDLTPEVFTLL 153 (957)
Q Consensus 75 f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tp-eLa~~L~~~V~klL 153 (957)
...++.+.+++...++-+.-++.... +++ ++..|.+-|.++++.+|..|..+|+.+... .... .
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~--~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~----~----- 90 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG--GQD----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED----N----- 90 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC--CHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH----H-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC--Cch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch----H-----
Confidence 44455556666655555554444432 222 445666777888999999999999888743 2211 1
Q ss_pred hhhhHHHHHHHHH-hhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHH
Q 040316 154 SSNAVRVCFKRLV-ENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRL 232 (957)
Q Consensus 154 ~~~AvR~~~~kL~-elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L 232 (957)
+++.|. .++.|+++.|..+|+.+|..++..++......+|.+...|. ..+++.....+..|+.+...
T Consensus 91 -------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-d~~~~vR~~a~~aL~~~~~~---- 158 (280)
T 1oyz_A 91 -------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-DKSTNVRRATAFAISVINDK---- 158 (280)
T ss_dssp -------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-CSCHHHHHHHHHHHHTC-------
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-CCCHHHHHHHHHHHHhcCCH----
Confidence 122233 24568889999999999988887665433334566666665 47888888888888876542
Q ss_pred HhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhh
Q 040316 233 AKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENK 312 (957)
Q Consensus 233 ~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~ 312 (957)
..++.+..++.. ....|-..++..+.......+ .++..|..++.+.++.+|..++.+|..+. .+.. .
T Consensus 159 --~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--~~~~----~ 225 (280)
T 1oyz_A 159 --ATIPLLINLLKD-PNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYRK--DKRV----L 225 (280)
T ss_dssp --CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHTT--CGGG----H
T ss_pred --HHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CHhh----H
Confidence 135566666655 556677777777655422233 34566777888899999999999999886 3333 3
Q ss_pred HhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhh-cChHHHHHHHHHH
Q 040316 313 DFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALK-SDPEFCNQILGSI 369 (957)
Q Consensus 313 ~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~-sD~~~r~elI~aI 369 (957)
..++.++.|+| +|..|+..|..+.++ .++..|...+.+ .+.+++.+++..+
T Consensus 226 ~~L~~~l~d~~--vr~~a~~aL~~i~~~----~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 226 SVLCDELKKNT--VYDDIIEAAGELGDK----TLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHTSSS--CCHHHHHHHHHHCCG----GGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHhcCcc--HHHHHHHHHHhcCch----hhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 45566778876 899999999998875 345556666654 4677888777765
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.51 E-value=3.3e-06 Score=87.52 Aligned_cols=210 Identities=13% Similarity=0.126 Sum_probs=156.2
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH-
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR- 235 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k- 235 (957)
|+.+.++|.+.|+.+...|+..|..+...+.... ...+|.|+++|.. .++..+...+..|..++..++.....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6788899999999999999998866554322211 2356888888875 56888999999999998866654433
Q ss_pred ----HHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHH----HHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH
Q 040316 236 ----VVEPICEFMRRTEAKSLLFECIRTVLSSLSEYES----AVK-LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW 306 (957)
Q Consensus 236 ----Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~----li~-l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~ 306 (957)
.++.+..++++ .+..+...|+.++.......+. ++. .++..|..+|.+.++.++.-++.+|..|+...+.
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 56777888877 5678888888887765433322 122 3778888999999999999999999999986654
Q ss_pred HH-----hhhhHhhcccccCCCHHHHHHHHHHHhhhcC--cccHHH-----HHHHHHHHhhhcChHHHHHHHHHHHHHH
Q 040316 307 AV-----LENKDFVIKSLSDGDYNIKLESLRLLMSMVS--ESNVAE-----ISRVLINYALKSDPEFCNQILGSILSTC 373 (957)
Q Consensus 307 ~v-----~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~-----IV~ELl~yl~~sD~~~r~elI~aI~~ic 373 (957)
.. ..-...++.+++++|..+|..|+..|..|+. +.+... ++..|...+...++..+..++.+|..+|
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 32 2246778889999999999999999999983 344443 4455777777788888888888886654
No 39
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.51 E-value=1.2e-05 Score=82.39 Aligned_cols=217 Identities=17% Similarity=0.156 Sum_probs=161.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCchh--hHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 040316 111 TNQLRKDLNSSNQFEVSLALECLSRIGNVD--LARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELC 188 (957)
Q Consensus 111 tNtLkKDL~s~Np~vr~LALr~Ls~I~tpe--La~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~ 188 (957)
+..|.+-|.++++.++..|+.+|+++.... .... ++.. .+++.|.++|.+.++.|...|+.+|..++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~~~~----g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 72 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-------IVDA----GGVEVLVKLLTSTDSEVQKEAARALANIA 72 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-------HHHT----THHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-------HHHC----CCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456677788889999999999998875422 2211 1111 24577888999999999999999999999
Q ss_pred hcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-----HHHHHHHHHhhcCCcchHHHHHHH
Q 040316 189 LKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-----RVVEPICEFMRRTEAKSLLFECIR 258 (957)
Q Consensus 189 ~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-----kLl~~L~~lL~~t~a~SVLyE~I~ 258 (957)
..++... ...+|.+.++|.+ .++..+...+..|..++...+.... ..++.+..++.+ ....+...++.
T Consensus 73 ~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~ 150 (252)
T 4hxt_A 73 SGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAAR 150 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHH
T ss_pred cCChHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHH
Confidence 8755421 1356778888874 7888999999999999976665443 346777788876 45778888888
Q ss_pred HHHhhcCCcHHHH-----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh-----hhHhhcccccCCCHHHHH
Q 040316 259 TVLSSLSEYESAV-----KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE-----NKDFVIKSLSDGDYNIKL 328 (957)
Q Consensus 259 ~Ii~~l~~~~~li-----~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~-----h~~~Il~cL~D~D~sIR~ 328 (957)
++.......+... ..++..|..+|.+.++.++..++.+|..|+..++...+. -...++..+.++|..+|.
T Consensus 151 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 151 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHH
Confidence 8877644333322 236788888999999999999999999999866654322 346777888999999999
Q ss_pred HHHHHHhhhcCc
Q 040316 329 ESLRLLMSMVSE 340 (957)
Q Consensus 329 ~ALeLL~~Lvne 340 (957)
.|+..|..|+..
T Consensus 231 ~a~~~L~~l~~~ 242 (252)
T 4hxt_A 231 EAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999999887643
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.49 E-value=1.1e-05 Score=99.02 Aligned_cols=361 Identities=9% Similarity=0.054 Sum_probs=224.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc
Q 040316 111 TNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLK 190 (957)
Q Consensus 111 tNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~ 190 (957)
+..+.++|.++++.++..|++.+..+.... +. ..+++.|..+|.+.|+.|...|+.+|..|+..
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~------------i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~ 180 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAE------------LA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK 180 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHH------------HH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHH------------HH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC
Confidence 567888899999999888888876321111 11 23567788888899999999999999999875
Q ss_pred CCCC-----ccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChH---H-HhHHHHHHHHHhhcCCcchHHHHHHHHHH
Q 040316 191 DPRS-----YLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPR---L-AKRVVEPICEFMRRTEAKSLLFECIRTVL 261 (957)
Q Consensus 191 np~~-----~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~---L-~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii 261 (957)
.... ....++.|++.|.+..++-.+...+..|..++..... . ....++.|..++++ ....+.++|+.++.
T Consensus 181 ~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS-PVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 3210 1135788888888766777888888888877654221 1 12356778888877 45789999998877
Q ss_pred hhcC---CcHHHH--HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHH----Hh-hhhHhhcccccCCCH-HHHHHH
Q 040316 262 SSLS---EYESAV--KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWA----VL-ENKDFVIKSLSDGDY-NIKLES 330 (957)
Q Consensus 262 ~~l~---~~~~li--~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~----v~-~h~~~Il~cL~D~D~-sIR~~A 330 (957)
.... +....+ .-++..|..+|.+.+..++..++.+|..++..++.. +. .-...++.++.+.+. .++..+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a 339 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 6532 222222 246778889998888899999999998887655422 11 123445556665543 444456
Q ss_pred HHHHhhhcCc-ccHHHH-----HHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHH
Q 040316 331 LRLLMSMVSE-SNVAEI-----SRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGE 404 (957)
Q Consensus 331 LeLL~~Lvne-~Nv~~I-----V~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~ 404 (957)
+.+|..++.. .|...+ +..|+..+.+.+...++.++..+..+|..... .....-.+..|++++......+..
T Consensus 340 ~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~ 417 (780)
T 2z6g_A 340 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVT 417 (780)
T ss_dssp HHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh--hhhhhhHHHHHHHHHcCCCHHHHH
Confidence 7777776653 444444 47788888888889999999999888764311 112244788899998876666666
Q ss_pred HHHHHHHHHHHhcCcchH-----HHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCCHH----H-----HHHH
Q 040316 405 EIEHQIIDIAMRVKDVRP-----ALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRNPF----E-----LMEA 470 (957)
Q Consensus 405 eI~~~L~dIi~rvp~ir~-----~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~p~----~-----iL~~ 470 (957)
.+...|.++....+..+. .++..++.+|.+.. ....+...++|++|.-+....+.. . .+..
T Consensus 418 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~ 492 (780)
T 2z6g_A 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-----DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPV 492 (780)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHH
Confidence 666777776654333222 24555666664310 123688899999998765433211 0 1222
Q ss_pred HhcccccC-CCHHHHHHHHHHHHHHHH
Q 040316 471 LLQPRTNL-LLPSIRAVYVQSVFKVLI 496 (957)
Q Consensus 471 LL~~~~~~-es~~Vq~~iLtAl~Klf~ 496 (957)
|+. -+.. ..+.++.....++..+..
T Consensus 493 L~~-lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 493 VVK-LLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHH-TTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHH-HhcCCChHHHHHHHHHHHHHHhc
Confidence 222 1111 234777777777776653
No 41
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.44 E-value=0.00022 Score=91.16 Aligned_cols=452 Identities=10% Similarity=0.021 Sum_probs=239.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC----------cchhHHHHHHhhc-CCCccchhhhHHHHHhhcC---
Q 040316 36 AIEEIRREIKSTDLPTKSAALRKLSYLSSLHGAD----------MSFAAFHAVEVMS-SPQFFYKKIGYHAVTQSFN--- 101 (957)
Q Consensus 36 elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~D----------mS~~~f~VVelms-S~~~~~KRlGYLaas~~~~--- 101 (957)
-+..+-..+.+.+...|..+..-|-.+....|.+ ........++.+. +++...+.-+..++...+.
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 3444555566666655543333222221112443 2334555556776 5666666655555554442
Q ss_pred CC-chHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCc---hhhHhhhHHHHHHhhhhh--------hHH----------
Q 040316 102 DD-TPVILLITNQLRKDLNSSNQFEVSLALECLSRIGN---VDLARDLTPEVFTLLSSN--------AVR---------- 159 (957)
Q Consensus 102 ~~-~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~t---peLa~~L~~~V~klL~~~--------AvR---------- 159 (957)
.. ....--+...|.+-|.++++.+|..|+++|+.+.. ..+...+.+.+...|.+. ++.
T Consensus 167 ~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~ 246 (1230)
T 1u6g_C 167 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG 246 (1230)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH
Confidence 11 11223455677778899999999999998888764 344555667776666541 111
Q ss_pred --------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcC---------------------
Q 040316 160 --------VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSK--------------------- 210 (957)
Q Consensus 160 --------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~--------------------- 210 (957)
.+++.+...+.|.++.|-.+|+.++..++...+..+.+..|.++..|....
T Consensus 247 ~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~ 326 (1230)
T 1u6g_C 247 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 326 (1230)
T ss_dssp GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccc
Confidence 134566677789999999888888888887766655444454444432210
Q ss_pred ------------------ChHH-HHHHHHHHHhhccCChHH----HhHHHHHHHHHhhcCCcchHHHHHHHHH---Hhhc
Q 040316 211 ------------------NNWL-LIKVLKIFAKLATLEPRL----AKRVVEPICEFMRRTEAKSLLFECIRTV---LSSL 264 (957)
Q Consensus 211 ------------------npWl-qIkILkLL~~l~p~ep~L----~~kLl~~L~~lL~~t~a~SVLyE~I~~I---i~~l 264 (957)
..|- ....++.|..+...-+.. ..++++.+...+.. ....|-.+++.++ +...
T Consensus 327 ~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~ 405 (1230)
T 1u6g_C 327 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE-REENVKADVFHAYLSLLKQT 405 (1230)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC-SSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHh
Confidence 1243 222334444443322221 11222222222211 2234443444433 2211
Q ss_pred CC----------------c----HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhh----Hhhccccc
Q 040316 265 SE----------------Y----ESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENK----DFVIKSLS 320 (957)
Q Consensus 265 ~~----------------~----~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~----~~Il~cL~ 320 (957)
.. . ...+..++..+...+.+.++.+|..++..+..++...+..+.+|. ..++..|.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~ 485 (1230)
T 1u6g_C 406 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLN 485 (1230)
T ss_dssp CCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTT
T ss_pred ccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHc
Confidence 11 0 112233445555557788889999999999999887765555544 55566788
Q ss_pred CCC--HHHHHHHHHHHhhhcC---ccc----HHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhc---ccccchHHHH
Q 040316 321 DGD--YNIKLESLRLLMSMVS---ESN----VAEISRVLINYALKSDPEFCNQILGSILSTCCRNLY---EVIVDFDWYA 388 (957)
Q Consensus 321 D~D--~sIR~~ALeLL~~Lvn---e~N----v~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y---~~~~dfeWyv 388 (957)
|+. ..+|..++..+..++. ++. +..++..|+..+.+....++.+++..+..++..... ....++.=|+
T Consensus 486 d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 565 (1230)
T 1u6g_C 486 DKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 565 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 875 4899988888887743 332 344666677777766677777888888777643211 0011233355
Q ss_pred HHHHH----hhc--cCCcchHHHHHHHHHHHHHhcCc-ch---HHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCC
Q 040316 389 SLLGE----MVR--IPHCQKGEEIEHQIIDIAMRVKD-VR---PALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYV 458 (957)
Q Consensus 389 dvLl~----Ll~--~~~~~v~~eI~~~L~dIi~rvp~-ir---~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~ 458 (957)
+.++. .+. .....+...+...+-.++....+ +. +.++..+...+.+ ......+++.+|+-+
T Consensus 566 ~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~---------e~~r~~~~~al~~i~ 636 (1230)
T 1u6g_C 566 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN---------EITRLTTVKALTLIA 636 (1230)
T ss_dssp HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS---------SSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc---------chhHHHHHHHHHHHH
Confidence 54444 332 11223444444555555544322 22 2333333333321 112333444444322
Q ss_pred CCCC--C----HHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHh
Q 040316 459 EFSR--N----PFELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFC 498 (957)
Q Consensus 459 ~~i~--~----p~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~ 498 (957)
.... + -.+++..+.. ........+|..++.++.++...+
T Consensus 637 ~~~~~~~~~~~~~~i~~~L~~-~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 637 GSPLKIDLRPVLGEGVPILAS-FLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp TCSSCCCCHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred hCccccchHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhcc
Confidence 2110 1 1344554443 355677889999999998888765
No 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.37 E-value=2.2e-05 Score=81.26 Aligned_cols=218 Identities=17% Similarity=0.143 Sum_probs=158.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc
Q 040316 111 TNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLK 190 (957)
Q Consensus 111 tNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~ 190 (957)
-+.+.+.|.|+++.++..|+.+|.++.+.. . +....++.. .+++.|.++|.+.++.|...|+.+|..++..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~--~---~~~~~~~~~----g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG--N---EQIQAVIDA----GALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHH--H---HHHHHHHHT----THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--C---chHHHHHHc----CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 356778888888888888888887654421 0 111111111 2467888999999999999999999999986
Q ss_pred CCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHH-----HhHHHHHHHHHhhcCCcchHHHHHHHHH
Q 040316 191 DPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRL-----AKRVVEPICEFMRRTEAKSLLFECIRTV 260 (957)
Q Consensus 191 np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L-----~~kLl~~L~~lL~~t~a~SVLyE~I~~I 260 (957)
++... ...+|.++++|.+ .++-.+...+..|..++...+.- ....++.+..+++. ....+..+++.++
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L 162 (252)
T 4db8_A 85 GNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 162 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 55421 2357888888876 67888889999999988765532 12356788888876 5677888888888
Q ss_pred HhhcCCcHHHH-----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh-----hhHhhcccccCCCHHHHHHH
Q 040316 261 LSSLSEYESAV-----KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE-----NKDFVIKSLSDGDYNIKLES 330 (957)
Q Consensus 261 i~~l~~~~~li-----~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~-----h~~~Il~cL~D~D~sIR~~A 330 (957)
.......+... ..++..|..+|.+.++.++..++.+|..|+..++..... -...++.++.++|..+|..|
T Consensus 163 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 163 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 77644333332 235778888998899999999999999999766643322 34667888999999999999
Q ss_pred HHHHhhhcC
Q 040316 331 LRLLMSMVS 339 (957)
Q Consensus 331 LeLL~~Lvn 339 (957)
+..|..|+.
T Consensus 243 ~~~L~~l~~ 251 (252)
T 4db8_A 243 QEALEKLQS 251 (252)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999998874
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.30 E-value=2e-05 Score=79.97 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=106.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc
Q 040316 111 TNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLK 190 (957)
Q Consensus 111 tNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~ 190 (957)
+..|.+-|.++++.+|..|+..|+.+..++.. +.|.++|.|+|+.|...|+.+|..+...
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~--------------------~~L~~~l~~~~~~vr~~a~~aL~~~~~~ 80 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAV--------------------EPLIKALKDEDAWVRRAAADALGQIGDE 80 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH--------------------HHHHHHTTCSCHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHH--------------------HHHHHHHcCCCHHHHHHHHHHHHhhCCH
Confidence 34555667778888888888888877764332 2355566677777777777777766421
Q ss_pred CCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHH
Q 040316 191 DPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESA 270 (957)
Q Consensus 191 np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~l 270 (957)
..+|.+.+.|.+ .+++.....+..|..+.. +
T Consensus 81 ------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------------------------------------~-- 111 (211)
T 3ltm_A 81 ------RAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------------------------------------E-- 111 (211)
T ss_dssp ------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------------------------------------G--
T ss_pred ------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------------------------------------H--
Confidence 123444444432 444444444444433321 1
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHH
Q 040316 271 VKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVL 350 (957)
Q Consensus 271 i~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~EL 350 (957)
.++..|..+|.+.++.+|..++.+|..+.. +. ....+..+++|+|..+|..|+..|..+.+ ..++..|
T Consensus 112 --~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L 179 (211)
T 3ltm_A 112 --RAVEPLIKALKDEDWFVRIAAAFALGEIGD--ER----AVEPLIKALKDEDGWVRQSAADALGEIGG----ERVRAAM 179 (211)
T ss_dssp --GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCS----HHHHHHH
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----hhHHHHH
Confidence 123445555566667777777777766642 21 23445556677777777777777777754 3455556
Q ss_pred HHHhhhcChHHHHHHHHHHHHHHh
Q 040316 351 INYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 351 l~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
...+.+.++.+|..++.++..+..
T Consensus 180 ~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 180 EKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCC
Confidence 666666777777777777665543
No 44
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.27 E-value=3.8e-06 Score=88.35 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=146.0
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC-----ccCchHHHHHHHhhcCChHHHHHHHHHHHhhc---cCChHHH
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRS-----YLPLAPEFYKILVDSKNNWLLIKVLKIFAKLA---TLEPRLA 233 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~-----~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~---p~ep~L~ 233 (957)
+.-|.++|.|+|+-|+.+|+.++-++.+..|+. +..+.|.+++++. +.|+=..++-+|++.++- |..+...
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 445778999999999999999999999986652 3344555555553 588999999999888874 5567888
Q ss_pred hHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh--ChHHHhhh
Q 040316 234 KRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK--HLWAVLEN 311 (957)
Q Consensus 234 ~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~--~p~~v~~h 311 (957)
.++.+.+.+++.+ .+..+..|++-..-. ++. -.....+++.|-.++.|.|+.+|-.||..+..|+.. +|..+..-
T Consensus 114 ~Kl~~aL~dlik~-~~~il~~eaae~Lgk-lkv-~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I 190 (265)
T 3b2a_A 114 LKAAKTLVSLLES-PDDMMRIETIDVLSK-LQP-LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLI 190 (265)
T ss_dssp HHHHHHHHHHTTS-CCHHHHHHHHHHHHH-CCB-SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGT
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHhCc-CCc-ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 8999999999986 556666777665433 321 123456778888888999999999999999999874 46777777
Q ss_pred hHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHh
Q 040316 312 KDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYA 354 (957)
Q Consensus 312 ~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl 354 (957)
.+.|-..|+..|++|+.+||+++..|.+..=.+.++.++..-+
T Consensus 191 ~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~ 233 (265)
T 3b2a_A 191 LDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKIS 233 (265)
T ss_dssp TTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHH
Confidence 7777778898999999999999999998765555555555443
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.23 E-value=6.7e-05 Score=75.99 Aligned_cols=90 Identities=19% Similarity=0.119 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHh
Q 040316 275 VVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYA 354 (957)
Q Consensus 275 v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl 354 (957)
+..|..+|.+.++.+|..++.+|..+.. +. ....++.+++|+|..+|..|+..|..+.++. .+..|...+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l 152 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--ER----AVEPLIKALKDEDWFVRIAAAFALGEIGDER----AVEPLIKAL 152 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG----GHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--HH----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHH
Confidence 4556667788899999999999988864 22 3456667889999999999999999997754 456677778
Q ss_pred hhcChHHHHHHHHHHHHHHh
Q 040316 355 LKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 355 ~~sD~~~r~elI~aI~~ic~ 374 (957)
.+.++..|..++.+++.+..
T Consensus 153 ~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHHHHHHhCc
Confidence 88889999999988887643
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.22 E-value=8.6e-05 Score=74.63 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=140.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHH
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPI 240 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L 240 (957)
.++.+.++|.|+|+.|...|+..|..+... ..++.+.+.|. ..++|.....++.|..+.. + ..++.+
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~------~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~--~----~~~~~L 81 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE------RAVEPLIKALK-DEDAWVRRAAADALGQIGD--E----RAVEPL 81 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCG------GGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC--G----GGHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC--H----HHHHHH
Confidence 356788999999999999999999988642 34788888885 4789999999999988763 2 234555
Q ss_pred HHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhccccc
Q 040316 241 CEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLS 320 (957)
Q Consensus 241 ~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~ 320 (957)
...+.. ....|-..++.++..... + .++..|..+|.+.++.+|..++.+|..+.. + .....+..+++
T Consensus 82 ~~~l~d-~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~ 148 (201)
T 3ltj_A 82 IKALKD-EDGWVRQSAAVALGQIGD--E----RAVEPLIKALKDEDWFVRIAAAFALGEIGD--E----RAVEPLIKALK 148 (201)
T ss_dssp HHHTTC-SSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--G----GGHHHHHHHTT
T ss_pred HHHHcC-CCHHHHHHHHHHHHHhCc--H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--H----HHHHHHHHHHc
Confidence 666665 567788888888766422 1 245667778888999999999999999863 2 23456677889
Q ss_pred CCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHH
Q 040316 321 DGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILST 372 (957)
Q Consensus 321 D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~i 372 (957)
|+|..+|..|+..|..+.++ ..+..|...+.+.++.+|..++.++..+
T Consensus 149 d~~~~vr~~A~~aL~~~~~~----~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 149 DEDGWVRQSAADALGEIGGE----RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCSH----HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCch----hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999999999999999653 4666777777888889999888887643
No 47
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.18 E-value=9.7e-05 Score=74.35 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=103.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH-
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR- 235 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k- 235 (957)
++.|..+|.++|+.|...|+.+|..++..++... ...+|.++++|.. .++-.+...+..|..++..++.....
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 5678899999999999999999999987665421 1345667766654 46666777777777776555443322
Q ss_pred ----HHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHH-----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH
Q 040316 236 ----VVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAV-----KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW 306 (957)
Q Consensus 236 ----Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li-----~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~ 306 (957)
.++.+..++++ .+..+..+++.++.......+... ..++..|..+|.+.++.++..++.+|..++...+.
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 23455555554 345555666655555432222221 12455555566556666666666666666654332
Q ss_pred HHh-----hhhHhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 307 AVL-----ENKDFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 307 ~v~-----~h~~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
... .-...++.++.++|..+|..|+..|..|+
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 211 12344555555666666666666665554
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.18 E-value=6.6e-05 Score=75.45 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhh
Q 040316 110 ITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCL 189 (957)
Q Consensus 110 atNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~ 189 (957)
.+..+.+.|.++++.+|..|+..|+.+..++.+ +.|.++|.|+|+.|...|+.++..+..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~--------------------~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV--------------------EPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH--------------------HHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHH--------------------HHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 346677788888888898888888887764332 335566677888888888888877753
Q ss_pred cCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHH
Q 040316 190 KDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYES 269 (957)
Q Consensus 190 ~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~ 269 (957)
. ..+|.+...|.+ .+++.....++.|..+.. +. .++.+...+.. .+..|-..++.++-.... +
T Consensus 75 ~------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--~~----~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--~- 137 (201)
T 3ltj_A 75 E------RAVEPLIKALKD-EDGWVRQSAAVALGQIGD--ER----AVEPLIKALKD-EDWFVRIAAAFALGEIGD--E- 137 (201)
T ss_dssp G------GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTC-SSHHHHHHHHHHHHHHTC--G-
T ss_pred H------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc--HH----HHHHHHHHHcC-CCHHHHHHHHHHHHHhCC--H-
Confidence 2 245677776654 788888888888877653 22 34455555644 556777778777665422 1
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 270 AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 270 li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
.++..|..++.+.++.+|..++.+|..+.. +. ....+..+++|+|..+|..|.+.|..+-
T Consensus 138 ---~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~~----~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 ---RAVEPLIKALKDEDGWVRQSAADALGEIGG--ER----VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--HH----HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--hh----HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 245667778888889999999999988842 33 2344555678899999999998887653
No 49
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.13 E-value=0.003 Score=77.83 Aligned_cols=334 Identities=15% Similarity=0.113 Sum_probs=213.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC-----cc-----hhHHHHHHhhcCC--CccchhhhHHHHHhhcCCCc
Q 040316 37 IEEIRREIKSTDLPTKSAALRKLSYLSSLHGAD-----MS-----FAAFHAVEVMSSP--QFFYKKIGYHAVTQSFNDDT 104 (957)
Q Consensus 37 laEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~D-----mS-----~~~f~VVelmsS~--~~~~KRlGYLaas~~~~~~~ 104 (957)
+.-+...+++.+...+..|+.-|.-+--..|.| +. .+....++++.++ +...++-+--++. |+..++
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLa-yLS~~~ 410 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDA 410 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHH-HHTTSH
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHhCCc
Confidence 455666677777666666665555543211212 11 1233355677777 7777776555554 233333
Q ss_pred hHHHH------HHHHHHHHhcCCCHHHHHHHHHhhccCCc-hh----------hHhhhHHHH--HHhhhh-hhHH-----
Q 040316 105 PVILL------ITNQLRKDLNSSNQFEVSLALECLSRIGN-VD----------LARDLTPEV--FTLLSS-NAVR----- 159 (957)
Q Consensus 105 dlllL------atNtLkKDL~s~Np~vr~LALr~Ls~I~t-pe----------La~~L~~~V--~klL~~-~AvR----- 159 (957)
++-.- ++-.|-.=|.+.++.++--|+++|+||.+ .+ ++......+ ...+.+ +.++
T Consensus 411 ~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~ 490 (810)
T 3now_A 411 ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490 (810)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence 32111 22233334456788899999999999987 21 111100000 000000 1111
Q ss_pred ----HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhcc-CC
Q 040316 160 ----VCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLAT-LE 229 (957)
Q Consensus 160 ----~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p-~e 229 (957)
-+.|.|..+|...++.|...|+.+|..|+.. +..- ...+|.|+++|.. .++-.+......|.+++. .+
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s-~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALE-GTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCCC
Confidence 1468899999999999999999999999853 3210 2356888888865 455566667777777654 34
Q ss_pred hHHH------hHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHH----H-HHHHHHHHhhcCCCchHHHHHHHHHH
Q 040316 230 PRLA------KRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAV----K-LAVVKVREFLVDDDPNLKYLGLQALS 298 (957)
Q Consensus 230 p~L~------~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li----~-l~v~~L~~fL~ssDpNlrYvaL~~L~ 298 (957)
|... ...+++|..+|++....-..+++..++.+.....++.. + .++.+|..+|.+.++.++--++.++.
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~ 648 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLC 648 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5431 23678888888753333345788887776544333322 1 36778888998999999999999999
Q ss_pred HHhhhChHHHhh------hhHhhcccccCCCHHHHHHHHHHHhhhcC--cccHHHHHH------HHHHHhhhcChHHHHH
Q 040316 299 IIAPKHLWAVLE------NKDFVIKSLSDGDYNIKLESLRLLMSMVS--ESNVAEISR------VLINYALKSDPEFCNQ 364 (957)
Q Consensus 299 ~Iv~~~p~~v~~------h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~IV~------ELl~yl~~sD~~~r~e 364 (957)
.|+. ++..... -...++.+++.+|..+|+.|.-.|..++. +.+++.|+. .|...+...|.+++..
T Consensus 649 NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~ 727 (810)
T 3now_A 649 NLVM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHR 727 (810)
T ss_dssp HHTT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHH
T ss_pred HHhC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHH
Confidence 9986 3333222 23456677888999999999999999986 667777765 7778888889999999
Q ss_pred HHHHHHHHHh
Q 040316 365 ILGSILSTCC 374 (957)
Q Consensus 365 lI~aI~~ic~ 374 (957)
++.+|..++.
T Consensus 728 A~~aL~NL~~ 737 (810)
T 3now_A 728 GIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 50
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.03 E-value=0.00079 Score=75.19 Aligned_cols=213 Identities=11% Similarity=0.135 Sum_probs=124.5
Q ss_pred HHHHHHhhhcCC--ChhHHHHHHHHHHHhhhcC-CCCccCch----HHHHHHHhhcC-ChHHHHHHHHHHHhhccC-C--
Q 040316 161 CFKRLVENLESS--EPVILSAVVGVFCELCLKD-PRSYLPLA----PEFYKILVDSK-NNWLLIKVLKIFAKLATL-E-- 229 (957)
Q Consensus 161 ~~~kL~elL~D~--D~sVv~AAv~vL~EI~~~n-p~~~l~La----p~L~~iL~~~~-npWlqIkILkLL~~l~p~-e-- 229 (957)
+++.|.+.+.+. |+.+..+|+.++..++... +..+.+.. +.+...|.+.. ++=.+...++.|..+... +
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777 8999999999999998865 44333333 44444444432 444566677777664332 1
Q ss_pred --hH-HHhHHHHHHHHHhhcCCcchHH---HHHHHHHHhhcCCc-HHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHh
Q 040316 230 --PR-LAKRVVEPICEFMRRTEAKSLL---FECIRTVLSSLSEY-ESAVK-LAVVKVREFLVDDDPNLKYLGLQALSIIA 301 (957)
Q Consensus 230 --p~-L~~kLl~~L~~lL~~t~a~SVL---yE~I~~Ii~~l~~~-~~li~-l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv 301 (957)
.. ....+++.+...+.. ....|. ++|+..++...+.. ...+. .++..+...+.+.++++|..++..+..++
T Consensus 209 ~~~~~~~~~l~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 209 FDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 11 112245555555433 333443 33433333221110 00111 23333444456788999999999888887
Q ss_pred hhC---------------------hHHHhhhh----Hhhccccc-------CCCHHHHHHHHHHHhhhcC---cccHHHH
Q 040316 302 PKH---------------------LWAVLENK----DFVIKSLS-------DGDYNIKLESLRLLMSMVS---ESNVAEI 346 (957)
Q Consensus 302 ~~~---------------------p~~v~~h~----~~Il~cL~-------D~D~sIR~~ALeLL~~Lvn---e~Nv~~I 346 (957)
... ..++..|. ..++.++. |.+.++|..|.+.|..++. +.-+..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~ 367 (462)
T 1ibr_B 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHV 367 (462)
T ss_dssp HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHH
Confidence 542 11333333 33334442 3446899988888877765 3445566
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 347 SRVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 347 V~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
+..+..++.+.+...|..++.+|+.++.
T Consensus 368 ~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 368 LPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 7777777777888899999999988875
No 51
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.83 E-value=0.0011 Score=66.57 Aligned_cols=174 Identities=14% Similarity=0.111 Sum_probs=131.0
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-----HHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHH
Q 040316 198 LAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK-----RVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVK 272 (957)
Q Consensus 198 Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~-----kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~ 272 (957)
..|.|..+|. +.++..+...+..|..++..++.... ..++.+..+|++ .+..+...++.++.......+....
T Consensus 13 ~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 13 ELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3456666665 57889999999999999876665433 356778888876 4678888888887775433333322
Q ss_pred -----HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHh-----hhhHhhcccccCCCHHHHHHHHHHHhhhcCc--
Q 040316 273 -----LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVL-----ENKDFVIKSLSDGDYNIKLESLRLLMSMVSE-- 340 (957)
Q Consensus 273 -----l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~-----~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne-- 340 (957)
-++..|..+|.+.++.++.-++.+|..|+...+.... .-...++.+++++|..+|..|+..|..++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 2567888899999999999999999999976654322 2457788889999999999999999999875
Q ss_pred ccHH-----HHHHHHHHHhhhcChHHHHHHHHHHHHHH
Q 040316 341 SNVA-----EISRVLINYALKSDPEFCNQILGSILSTC 373 (957)
Q Consensus 341 ~Nv~-----~IV~ELl~yl~~sD~~~r~elI~aI~~ic 373 (957)
.+.. ..+..|...+...+...+..+..++..+|
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2222 24577888888888999999998887765
No 52
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.75 E-value=0.0061 Score=69.93 Aligned_cols=329 Identities=7% Similarity=0.002 Sum_probs=193.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhccCCc--hhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhh
Q 040316 112 NQLRKDLNSSNQFEVSLALECLSRIGN--VDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCL 189 (957)
Q Consensus 112 NtLkKDL~s~Np~vr~LALr~Ls~I~t--peLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~ 189 (957)
..+-+-|.++++.++..|..+|.++.. +..-.. | ... -.+|.|.++|.++++.+...|+.+|..|+.
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~----i---~~~----g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQ----V---YQL----GGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHH----H---HHT----THHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHH----H---HHc----CCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 344555667788888888877777653 111110 0 011 246788899999999999999999999987
Q ss_pred cCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCCh---HHHhHHHHHHHHHhh--------cC------
Q 040316 190 KDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEP---RLAKRVVEPICEFMR--------RT------ 247 (957)
Q Consensus 190 ~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep---~L~~kLl~~L~~lL~--------~t------ 247 (957)
.++..- ..-+|.|+++|..+.++=.+-.....|..++..+. ......+++|..++. +.
T Consensus 74 ~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcc
Confidence 655421 24578899999855677777777777777765421 122256677777772 11
Q ss_pred -CcchHHHHHHHHHHhhcCCcHHHHH------HHHHHHHHhhcC------CCchHHHHHHHHHHHHhhhC----------
Q 040316 248 -EAKSLLFECIRTVLSSLSEYESAVK------LAVVKVREFLVD------DDPNLKYLGLQALSIIAPKH---------- 304 (957)
Q Consensus 248 -~a~SVLyE~I~~Ii~~l~~~~~li~------l~v~~L~~fL~s------sDpNlrYvaL~~L~~Iv~~~---------- 304 (957)
....|+..++.++.+.... ++... -++..|..+|.+ .+..+.=-++..|..++...
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~ 232 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHH
T ss_pred cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhh
Confidence 2345666777766654332 33222 355666666643 23333222222233322100
Q ss_pred --------------hHHHh-------------------------------hhhHhhccccc-CCCHHHHHHHHHHHhhhc
Q 040316 305 --------------LWAVL-------------------------------ENKDFVIKSLS-DGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 305 --------------p~~v~-------------------------------~h~~~Il~cL~-D~D~sIR~~ALeLL~~Lv 338 (957)
+..|. .-...++.+|. ..++.++..|.-.|..+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~ 312 (457)
T 1xm9_A 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312 (457)
T ss_dssp HHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Confidence 00000 00111223333 345788999999999998
Q ss_pred Cccc-----H-H------HHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhccccc-chHHHHHHHHHhhccCCc-----
Q 040316 339 SESN-----V-A------EISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIV-DFDWYASLLGEMVRIPHC----- 400 (957)
Q Consensus 339 ne~N-----v-~------~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~-dfeWyvdvLl~Ll~~~~~----- 400 (957)
..++ + + .++.-|.+.+...+...+.+++.+|..++.-. +... =....+..|++++.....
T Consensus 313 ~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp TCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTH
T ss_pred cCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCc
Confidence 6432 1 2 23457888888889999999999998776421 1110 013577788888876533
Q ss_pred -chHHHHHHHHHHHHHhcCcch-----HHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCC
Q 040316 401 -QKGEEIEHQIIDIAMRVKDVR-----PALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEF 460 (957)
Q Consensus 401 -~v~~eI~~~L~dIi~rvp~ir-----~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~ 460 (957)
.+...++..+.+++...++.. ...+..+..++... ....+.+.++|++..|..+
T Consensus 391 ~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~------~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS------ASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC------CcHHHHHHHHHHHHHHHcc
Confidence 133345556666665555422 23455666666421 1467999999999988754
No 53
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.64 E-value=0.024 Score=67.56 Aligned_cols=328 Identities=12% Similarity=0.023 Sum_probs=189.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhccCCc--hhhHhhhHHHHHHhhhhhhHH--HHHHHHHhhhcCCChhHHHHHHHHHHHh
Q 040316 112 NQLRKDLNSSNQFEVSLALECLSRIGN--VDLARDLTPEVFTLLSSNAVR--VCFKRLVENLESSEPVILSAVVGVFCEL 187 (957)
Q Consensus 112 NtLkKDL~s~Np~vr~LALr~Ls~I~t--peLa~~L~~~V~klL~~~AvR--~~~~kL~elL~D~D~sVv~AAv~vL~EI 187 (957)
-.|.+-|.++++.++..|..+|.++.. .+.- .+|. -.+|.|+++|.+.++.|...|+.+|..|
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k-------------~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVK-------------TDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH-------------HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHH-------------HHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 344445677788777777777666542 1111 0122 2468899999999999999999999999
Q ss_pred hhc-CCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCCh---HHHhHHHHHHHHHhh-------------
Q 040316 188 CLK-DPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEP---RLAKRVVEPICEFMR------------- 245 (957)
Q Consensus 188 ~~~-np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep---~L~~kLl~~L~~lL~------------- 245 (957)
+.. ++..- ..-+|.|+++|....+.-.+-.....|..++..+. ...+.-+++|..++.
T Consensus 118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC------
T ss_pred HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccc
Confidence 974 33321 23578899999875565556665556666654321 122333566666541
Q ss_pred ----cCCcchHHHHHHHHHHhhcCCcHHHHHH------HHHHHHHhhcC------CCchHHHHHHHHHHHHhhhC----h
Q 040316 246 ----RTEAKSLLFECIRTVLSSLSEYESAVKL------AVVKVREFLVD------DDPNLKYLGLQALSIIAPKH----L 305 (957)
Q Consensus 246 ----~t~a~SVLyE~I~~Ii~~l~~~~~li~l------~v~~L~~fL~s------sDpNlrYvaL~~L~~Iv~~~----p 305 (957)
+.....|+..|+.++...-..++...+. ++..|..+|.+ .+..+.--++.+|..|.... |
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 1112467777777766643333332221 23455555532 23334444555554444221 0
Q ss_pred ---------------------HHH----hh-hhHhhccccc-CCCHHHHHHHHHHHhhhcCcc-----cHH------HHH
Q 040316 306 ---------------------WAV----LE-NKDFVIKSLS-DGDYNIKLESLRLLMSMVSES-----NVA------EIS 347 (957)
Q Consensus 306 ---------------------~~v----~~-h~~~Il~cL~-D~D~sIR~~ALeLL~~Lvne~-----Nv~------~IV 347 (957)
.-+ +. -+..++..|. ..+..++..|...|..||..+ .++ ..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~gl 357 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357 (584)
T ss_dssp TCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHH
T ss_pred chhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcH
Confidence 000 00 0122233443 345889999999999997543 222 346
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHHhhhh-cccccchHHHHHHHHHhhccCCc--------chHHHHHHHHHHHHHhcC
Q 040316 348 RVLINYALKSDPEFCNQILGSILSTCCRNL-YEVIVDFDWYASLLGEMVRIPHC--------QKGEEIEHQIIDIAMRVK 418 (957)
Q Consensus 348 ~ELl~yl~~sD~~~r~elI~aI~~ic~~~~-y~~~~dfeWyvdvLl~Ll~~~~~--------~v~~eI~~~L~dIi~rvp 418 (957)
.-|.+.+...+...+..++.+|..+|.-.. -..+ ....+.-|+.++..... .+...+...+.+++...+
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I--~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAVDARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH--HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH
Confidence 778888888899999999999988764211 0111 23466777787776521 223345556666666555
Q ss_pred cchHH-----HHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCC
Q 040316 419 DVRPA-----LVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVE 459 (957)
Q Consensus 419 ~ir~~-----av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~ 459 (957)
+.+.. ++..+..++.+. ...+.+.++++|++.....
T Consensus 436 ~~~~~I~~~g~I~~Lv~LL~s~-----~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 436 EAAKKLRETQGIEKLVLINKSG-----NRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHTCS-----SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCChHHHHHHHhCC-----CCChHHHHHHHHHHHHHHc
Confidence 43333 345566666431 1246788888888887654
No 54
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.55 E-value=0.011 Score=67.80 Aligned_cols=293 Identities=11% Similarity=0.062 Sum_probs=183.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHH
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRV 236 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kL 236 (957)
++.+..+|...|+.+...|+.+|..++..++... ...+|.|+++|.. .++-.|......|+.++..++.....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4678889999999999999999999997776432 2457889998874 778888888888888887656554444
Q ss_pred -----HHHHHHHhhcCCcchHHHHHHHHHHhhc--CCcH-HHHHHHHHHHHHhhc--------C--------CCchHHHH
Q 040316 237 -----VEPICEFMRRTEAKSLLFECIRTVLSSL--SEYE-SAVKLAVVKVREFLV--------D--------DDPNLKYL 292 (957)
Q Consensus 237 -----l~~L~~lL~~t~a~SVLyE~I~~Ii~~l--~~~~-~li~l~v~~L~~fL~--------s--------sDpNlrYv 292 (957)
++++..+|+.+....+..+++.++...- +... .++.-++..|..+|. + .++++..-
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 5788899985466788888887776542 2222 244567778888882 2 35677778
Q ss_pred HHHHHHHHhhhChHH---Hhh---hhHhhcccccC------CCHHHHHHHHHHHhhhcCc--------------------
Q 040316 293 GLQALSIIAPKHLWA---VLE---NKDFVIKSLSD------GDYNIKLESLRLLMSMVSE-------------------- 340 (957)
Q Consensus 293 aL~~L~~Iv~~~p~~---v~~---h~~~Il~cL~D------~D~sIR~~ALeLL~~Lvne-------------------- 340 (957)
++.+|..|+.. |.. +.+ -...++..|.+ +|..++..++-+|..++..
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 99999888864 432 221 12333334432 4444555566555554310
Q ss_pred --------------------------------ccH-----HHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHhhhhc-c-c
Q 040316 341 --------------------------------SNV-----AEISRVLINYALKS-DPEFCNQILGSILSTCCRNLY-E-V 380 (957)
Q Consensus 341 --------------------------------~Nv-----~~IV~ELl~yl~~s-D~~~r~elI~aI~~ic~~~~y-~-~ 380 (957)
..+ ..+++.|...+... ++..+..++.+|..+|..+.. . .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 000 23455566666654 577888888999988863211 0 0
Q ss_pred c----cchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcch----HHHHHHHHHHhcCCcccCCCchHHHHHHHhh
Q 040316 381 I----VDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVR----PALVHVCRNLLIDPALLGNPFLHRILSAAAW 452 (957)
Q Consensus 381 ~----~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir----~~av~~l~~lL~d~~~l~~~~~~~~l~a~aW 452 (957)
. -...-.+..|++|+......+..+..-.|.++.. .+..+ ..++..++.+|..... ......+++.+++|
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~-~~~~~~~i~~~~i~~Lv~lL~~~~~-~~~~~~~v~~~~l~ 399 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLLTSHTG-NTSNSEDILSSACY 399 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHHHHTHHHHHHTTTSCCS-CSTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc-CHHHHHHHHHhhhHHHHHhccCCCC-CCCCcHHHHHHHHH
Confidence 0 0001235678888888777777777777777764 33333 3445556666643211 00123467778888
Q ss_pred hhccCC
Q 040316 453 VSGEYV 458 (957)
Q Consensus 453 IlGEY~ 458 (957)
.+|...
T Consensus 400 ~l~ni~ 405 (457)
T 1xm9_A 400 TVRNLM 405 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777643
No 55
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.50 E-value=0.00071 Score=75.89 Aligned_cols=238 Identities=11% Similarity=0.004 Sum_probs=121.2
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcc
Q 040316 238 EPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIK 317 (957)
Q Consensus 238 ~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~ 317 (957)
+.+..=+++ ++.-+---++++++.... +++++.....+...|.+.+|-+|=.|+.+..++....|+++......+-.
T Consensus 107 Nsl~kDl~~-~N~~iR~lALRtL~~I~~--~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ 183 (355)
T 3tjz_B 107 SSLTKDMTG-KEDSYRGPAVRALCQITD--STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQE 183 (355)
T ss_dssp HHHHHHHHS-SCHHHHHHHHHHHHHHCC--TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHH
T ss_pred HHHHhhcCC-CcHhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 334344444 455666667787777543 36677788888899999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhc---ChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHh
Q 040316 318 SLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKS---DPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEM 394 (957)
Q Consensus 318 cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~s---D~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~L 394 (957)
++.|.++.+...|+-+|+.++..+ ...+..|...+... ++--.-.+++.+..+|..+.. ...+.+++++..+
T Consensus 184 ll~d~n~~V~~~Al~lL~ei~~~d--~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~ 258 (355)
T 3tjz_B 184 AASSDNIMVQYHALGLLYHVRKND--RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESC 258 (355)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CC
T ss_pred HhcCCCccHHHHHHHHHHHHHhhc--hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHH
Confidence 999999999999999999998654 33455566655543 233334455544333322101 1245799999999
Q ss_pred hccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCcccCCCchHHHHHHHhhhhccCCCCCCC----HHHHHHH
Q 040316 395 VRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPALLGNPFLHRILSAAAWVSGEYVEFSRN----PFELMEA 470 (957)
Q Consensus 395 l~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~~i~~----p~~iL~~ 470 (957)
++..+..+.-|.+..|..+-.-.+.....++..+..+|.. ..+++..+++=.+......-++ ....++.
T Consensus 259 L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss-------~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~ 331 (355)
T 3tjz_B 259 LRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSS-------PKAALRYAAVRTLNKVAMKHPSAVTACNLDLEN 331 (355)
T ss_dssp CCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHS-------SSSSSHHHHHHCC--------------------
T ss_pred HcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcC-------CCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 9888887777777777665331122222233333333322 1234455555555554433222 2222333
Q ss_pred HhcccccCCCHHHHHHHHHHHHHH
Q 040316 471 LLQPRTNLLLPSIRAVYVQSVFKV 494 (957)
Q Consensus 471 LL~~~~~~es~~Vq~~iLtAl~Kl 494 (957)
++. +..-.+....+|++.|-
T Consensus 332 li~----d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 332 LVT----DANRSIATLAITTLLKT 351 (355)
T ss_dssp ------------------------
T ss_pred Hcc----CCcHhHHHHHHHHhhhc
Confidence 333 33445566667777764
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.34 E-value=0.047 Score=65.02 Aligned_cols=294 Identities=12% Similarity=0.087 Sum_probs=187.4
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccC-ChHHHhH
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL-EPRLAKR 235 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~-ep~L~~k 235 (957)
++.|+++|...|+.+...|+..|..++..+...- ..-+|.|+++|.. .++-.|......|..++-. ++.-...
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 5778899999999999999999999997654421 2457899998864 7888999999999998874 3433222
Q ss_pred -----HHHHHHHHhhcCCcchHHHHHHHHHHhhcCCc----HHHHHHHHHHHHHhh------------------cCCCch
Q 040316 236 -----VVEPICEFMRRTEAKSLLFECIRTVLSSLSEY----ESAVKLAVVKVREFL------------------VDDDPN 288 (957)
Q Consensus 236 -----Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~----~~li~l~v~~L~~fL------------------~ssDpN 288 (957)
-+++|..+|+++....+.-.++.++... +.+ ..++..++..|..+| ...+++
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL-S~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH-TTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 4678888888744455666666665553 222 233444556665554 123679
Q ss_pred HHHHHHHHHHHHhhhChH---HHhhh---hHhhcccc------cCCCHHHHHHHHHHHhhhcCcc---------------
Q 040316 289 LKYLGLQALSIIAPKHLW---AVLEN---KDFVIKSL------SDGDYNIKLESLRLLMSMVSES--------------- 341 (957)
Q Consensus 289 lrYvaL~~L~~Iv~~~p~---~v~~h---~~~Il~cL------~D~D~sIR~~ALeLL~~Lvne~--------------- 341 (957)
+++-+..+|..|+..+++ .+..+ ++.++..+ .++|..+...|+-.|..|+..-
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 999999999999876543 22222 12222222 2456667777777776655331
Q ss_pred ------------cH-----HHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHhhhhc-c-c---ccchHHHHHHHHHhhccC
Q 040316 342 ------------NV-----AEISRVLINYALKS-DPEFCNQILGSILSTCCRNLY-E-V---IVDFDWYASLLGEMVRIP 398 (957)
Q Consensus 342 ------------Nv-----~~IV~ELl~yl~~s-D~~~r~elI~aI~~ic~~~~y-~-~---~~dfeWyvdvLl~Ll~~~ 398 (957)
.+ ..+|+-|+..+..+ ++..++.++.+|..+|.-..+ . . +-..+-.+..|++|+...
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 11 13456677777543 678888999999888742111 0 0 111134588899999988
Q ss_pred CcchHHHHHHHHHHHHHhcCcch----HHHHHHHHHHhcCCccc-CCCchHHHHHHHhhhhccCC
Q 040316 399 HCQKGEEIEHQIIDIAMRVKDVR----PALVHVCRNLLIDPALL-GNPFLHRILSAAAWVSGEYV 458 (957)
Q Consensus 399 ~~~v~~eI~~~L~dIi~rvp~ir----~~av~~l~~lL~d~~~l-~~~~~~~~l~a~aWIlGEY~ 458 (957)
...+....+..|.++.. .+..+ ..++..++.+|.....- ......+++..++|.+|+-.
T Consensus 368 ~~~v~~~A~~aL~nLs~-~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~ 431 (584)
T 3l6x_A 368 HERVVKAASGALRNLAV-DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431 (584)
T ss_dssp CHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhC-ChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
Confidence 77777788888888875 44444 34555666666432100 00013577889999998764
No 57
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.24 E-value=0.12 Score=64.48 Aligned_cols=52 Identities=10% Similarity=-0.079 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhhChHHHhhhhHhhcccc----c-----CCCHHHHHHHHHHHhhhcCc
Q 040316 289 LKYLGLQALSIIAPKHLWAVLENKDFVIKSL----S-----DGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 289 lrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL----~-----D~D~sIR~~ALeLL~~Lvne 340 (957)
+|--++.+|..++..++..|.+|...|+.+. . ..+..++..+++.+..++..
T Consensus 262 vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~ 322 (960)
T 1wa5_C 262 VKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI 322 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc
Confidence 5667788999999999988888877765532 1 34578899999999988754
No 58
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.16 E-value=0.048 Score=63.09 Aligned_cols=294 Identities=10% Similarity=0.046 Sum_probs=177.5
Q ss_pred HHHHHHhhhcCC------------ChhHHHHHHHHHHHhhhcCCCCccC-----ch----------HHHHHHHhhcC---
Q 040316 161 CFKRLVENLESS------------EPVILSAVVGVFCELCLKDPRSYLP-----LA----------PEFYKILVDSK--- 210 (957)
Q Consensus 161 ~~~kL~elL~D~------------D~sVv~AAv~vL~EI~~~np~~~l~-----La----------p~L~~iL~~~~--- 210 (957)
|+|.|+++|... ++.+..-|..++..|+..+|+.... .+ +.+++.|...+
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM 150 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 688899998753 3688999999999999998875421 11 22333332211
Q ss_pred C----h------HHHHHHHHHHHhhccCChHHHhH-----HHHHHHHHhhc----------CCcchHHHHHHHHHHhhcC
Q 040316 211 N----N------WLLIKVLKIFAKLATLEPRLAKR-----VVEPICEFMRR----------TEAKSLLFECIRTVLSSLS 265 (957)
Q Consensus 211 n----p------WlqIkILkLL~~l~p~ep~L~~k-----Ll~~L~~lL~~----------t~a~SVLyE~I~~Ii~~l~ 265 (957)
+ + =.++..+..|.+++- +++.... .+++|..+|.. ..+..+..+++.++.....
T Consensus 151 ~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~ 229 (458)
T 3nmz_A 151 DQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229 (458)
T ss_dssp CCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 0 0 012345556666643 3443332 35677777742 1235678888877766432
Q ss_pred CcH---HHH---HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh-Ch---HHHhh--hhHhhccc-ccCCCHHHHHHHHH
Q 040316 266 EYE---SAV---KLAVVKVREFLVDDDPNLKYLGLQALSIIAPK-HL---WAVLE--NKDFVIKS-LSDGDYNIKLESLR 332 (957)
Q Consensus 266 ~~~---~li---~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~-~p---~~v~~--h~~~Il~c-L~D~D~sIR~~ALe 332 (957)
..+ ..+ .-++..|..+|.+.+++++..+..+|..|+.. ++ ..+.. =+..++.+ +...+..++..|+.
T Consensus 230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~ 309 (458)
T 3nmz_A 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 309 (458)
T ss_dssp TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 222 222 23578888999999999999999999999863 33 33333 24556665 45678899999999
Q ss_pred HHhhhcC--cccHHHHH------HHHHHHhhhcCh----HHHHHHHHHHHHHHhh--hhcccccc--hHHHHHHHHHhhc
Q 040316 333 LLMSMVS--ESNVAEIS------RVLINYALKSDP----EFCNQILGSILSTCCR--NLYEVIVD--FDWYASLLGEMVR 396 (957)
Q Consensus 333 LL~~Lvn--e~Nv~~IV------~ELl~yl~~sD~----~~r~elI~aI~~ic~~--~~y~~~~d--feWyvdvLl~Ll~ 396 (957)
.|..|++ .+|-..|+ .-|...+...+. +++.+++.+|..++.. ...+...- ..=.+..|++++.
T Consensus 310 aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~ 389 (458)
T 3nmz_A 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389 (458)
T ss_dssp HHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS
T ss_pred HHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc
Confidence 9999986 35655554 445556554433 4788888777766641 01111000 0114677888887
Q ss_pred cCCcchHHHHHHHHHHHHHhcCcchHHHHHH-HHHHhcCCcccCCCchHHHHHHHhhhhccCC
Q 040316 397 IPHCQKGEEIEHQIIDIAMRVKDVRPALVHV-CRNLLIDPALLGNPFLHRILSAAAWVSGEYV 458 (957)
Q Consensus 397 ~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~-l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~ 458 (957)
.....+..+..-.|.++....++.+..+++. ++..|.+ ++.. ....+...++|.+....
T Consensus 390 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~--LL~s-~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN--LIHS-KHKMIAMGSAAALRNLM 449 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHT--TTTC-SSHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH--HHhC-CCHHHHHHHHHHHHHHH
Confidence 7666677777778888876556555544432 1222222 2211 34567788888876544
No 59
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.14 E-value=0.012 Score=65.88 Aligned_cols=244 Identities=11% Similarity=0.053 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh-hhHHHHHHHHHhhhc-----------CCChhHHHHHHHHHHHh
Q 040316 120 SSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS-NAVRVCFKRLVENLE-----------SSEPVILSAVVGVFCEL 187 (957)
Q Consensus 120 s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~-~AvR~~~~kL~elL~-----------D~D~sVv~AAv~vL~EI 187 (957)
.+++...+.|+.+|.+|...+-.+ +.+.. .++ +.|..+|. ..++.+...|+.+|..+
T Consensus 43 ~~~~~~~~~A~~aL~nls~d~e~R-------~~i~~~G~l----~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nL 111 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSFDEEHR-------HAMNELGGL----QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 111 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHTSHHHH-------HHHHHTTHH----HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHH-------HHHHHcCCH----HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHH
Confidence 455577888999999886533222 22221 122 23333331 13467888999999999
Q ss_pred hhcCCCC---c---cCchHHHHHHHhhcCChHHHHHHHHHHHhhccC-ChHHHh-----HHHHHHHHHhhcCCcchHHHH
Q 040316 188 CLKDPRS---Y---LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL-EPRLAK-----RVVEPICEFMRRTEAKSLLFE 255 (957)
Q Consensus 188 ~~~np~~---~---l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~-ep~L~~-----kLl~~L~~lL~~t~a~SVLyE 255 (957)
+..+... + ...+|.|+++|. +.++=.+......|..++-. ++.-.. ..+++|..+|.++....+...
T Consensus 112 a~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~ 190 (354)
T 3nmw_A 112 TFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 190 (354)
T ss_dssp TSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHH
Confidence 8765421 1 234788888886 46777777777777777653 343222 245777787655455667777
Q ss_pred HHHHHHhhcCCcH----HHH--HHHHHHHHHhhcCCCc----hHHHHHHHHHHHHhh---hChH---HHhh--hhHhhcc
Q 040316 256 CIRTVLSSLSEYE----SAV--KLAVVKVREFLVDDDP----NLKYLGLQALSIIAP---KHLW---AVLE--NKDFVIK 317 (957)
Q Consensus 256 ~I~~Ii~~l~~~~----~li--~l~v~~L~~fL~ssDp----NlrYvaL~~L~~Iv~---~~p~---~v~~--h~~~Il~ 317 (957)
++.++...-...+ .+. .-++..|..+|.+.++ +++.-+..+|..|+. ..+. .+.. -...++.
T Consensus 191 A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~ 270 (354)
T 3nmw_A 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 270 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHH
Confidence 7777665422122 222 2367778888865544 477777777766664 3443 2322 2566778
Q ss_pred cccCCCHHHHHHHHHHHhhhc--CcccHHHHH-----HHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 318 SLSDGDYNIKLESLRLLMSMV--SESNVAEIS-----RVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 318 cL~D~D~sIR~~ALeLL~~Lv--ne~Nv~~IV-----~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
.|.+++..++..|.-.|..++ +++|...|+ .-|.+.+...+...+..+..++..++..
T Consensus 271 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 271 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 889999999999999999998 466776664 5677777777888999999999888764
No 60
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.11 E-value=0.0083 Score=62.29 Aligned_cols=103 Identities=9% Similarity=0.097 Sum_probs=85.2
Q ss_pred HHHHHHHHhhc-CCCchHHHHHHHHHHHHhhhChHHHhh----hhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHH
Q 040316 273 LAVVKVREFLV-DDDPNLKYLGLQALSIIAPKHLWAVLE----NKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEIS 347 (957)
Q Consensus 273 l~v~~L~~fL~-ssDpNlrYvaL~~L~~Iv~~~p~~v~~----h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV 347 (957)
.++..|...|. +++++++..|+.++..|+..-...|.+ ....++.++.|+...||..|...|..++...++..++
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll 135 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQ 135 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34566777774 888999999999999998654333444 4466777899999999999999999999999999999
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 348 RVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 348 ~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
..|..++...++..|..++..|..+...
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 9999999998999999999998876543
No 61
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.087 Score=64.42 Aligned_cols=449 Identities=10% Similarity=0.062 Sum_probs=215.4
Q ss_pred HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhcCCCCcch--hHHHHHH-hhcCCCccchhhhHHHHHhhcCCCchHH-H
Q 040316 34 SKAIEEIRREIK-STDLPTKSAALRKLSYLSSLHGADMSF--AAFHAVE-VMSSPQFFYKKIGYHAVTQSFNDDTPVI-L 108 (957)
Q Consensus 34 ~~elaEIR~eL~-S~d~~~K~~AL~KLIYL~ML~G~DmS~--~~f~VVe-lmsS~~~~~KRlGYLaas~~~~~~~dll-l 108 (957)
..-+.|||..+. ..|. ...++..++| +++..|.+.| ..|-+-. +.-+..-..|.++-+...++....++.. -
T Consensus 131 ~~ll~~~~~~~~~~~~~--~~~~~l~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 131 IALLNELQIRIHYGEDT--HVTYLLSIIL-QLLNKFKYNFKEVRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHHTCSS--CHHHHHHHHH-HHHHHSCCCSTTTTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCc--chhHHHHHHH-HHHHHcCccccchhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 334455555544 2222 3445555554 4443333333 2233323 2356666677777777776655433211 1
Q ss_pred HHHHHHH-----HHhc-CCCHHHHHHHHHhhccCCchhhHhhh------HHHHHHhhhh--------------------h
Q 040316 109 LITNQLR-----KDLN-SSNQFEVSLALECLSRIGNVDLARDL------TPEVFTLLSS--------------------N 156 (957)
Q Consensus 109 LatNtLk-----KDL~-s~Np~vr~LALr~Ls~I~tpeLa~~L------~~~V~klL~~--------------------~ 156 (957)
..++.+. -|-. ..++++.+...-+..-=..|+++..+ .+.+.+.+.+ +
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 2222222 1111 45677765555444444556655332 3444444422 1
Q ss_pred hHHH-----HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCC---CccCchHHHHHHHhhcC-ChHHHHHHHHHHHhhcc
Q 040316 157 AVRV-----CFKRLVENLESSEPVILSAVVGVFCELCLKDPR---SYLPLAPEFYKILVDSK-NNWLLIKVLKIFAKLAT 227 (957)
Q Consensus 157 AvR~-----~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~---~~l~Lap~L~~iL~~~~-npWlqIkILkLL~~l~p 227 (957)
..|. |.+-|.+.+.+ ..+..-|..+||-+...... ....+++.+.+.|.+.. ++ +-..++.|+.++-
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~--~~~AvEgLaYLSl 363 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPK--VEMSVEALAYLSL 363 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHhC
Confidence 2232 23445566654 35666677778887653321 12345666666666532 22 4445666666553
Q ss_pred CChHHH------hHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHH--HHHHHHHHHhhcCCCchHHH--HHHHHH
Q 040316 228 LEPRLA------KRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAV--KLAVVKVREFLVDDDPNLKY--LGLQAL 297 (957)
Q Consensus 228 ~ep~L~------~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li--~l~v~~L~~fL~ssDpNlrY--vaL~~L 297 (957)
+|... ..+++.|..++..+...++.|.+..++.+.....+... +.-+..|..|...+.|+..- ..+..=
T Consensus 364 -~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~ 442 (778)
T 3opb_A 364 -KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAK 442 (778)
T ss_dssp -SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHH
T ss_pred -CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccch
Confidence 33322 23456666777655667999999998887643211100 11345566665332221110 001100
Q ss_pred HHHhhhChHHHhh--hhHhhcccccCCCHHHHHHHHHHHhhhcCc-ccHHHHH-----HHHHHHhhhcChH---HHHHHH
Q 040316 298 SIIAPKHLWAVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMVSE-SNVAEIS-----RVLINYALKSDPE---FCNQIL 366 (957)
Q Consensus 298 ~~Iv~~~p~~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne-~Nv~~IV-----~ELl~yl~~sD~~---~r~elI 366 (957)
..+...+-..+.. -...+..+++.++..+|..|..+|+.|+.. +|...++ +-|+.++...... .+..+.
T Consensus 443 ~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 443 EDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHH
Confidence 1111101111111 123345667788899999999999999855 4444443 6688888776433 688888
Q ss_pred HHHHHHHhhhhcccc-c--chHHHHHHHHHhhcc-CCcc-------------hHHHHHHHHHHHHHhc----CcchHHHH
Q 040316 367 GSILSTCCRNLYEVI-V--DFDWYASLLGEMVRI-PHCQ-------------KGEEIEHQIIDIAMRV----KDVRPALV 425 (957)
Q Consensus 367 ~aI~~ic~~~~y~~~-~--dfeWyvdvLl~Ll~~-~~~~-------------v~~eI~~~L~dIi~rv----p~ir~~av 425 (957)
.++..++.-.+|..+ + ..--.+.-|++|+.. .+.. ...+..-.|.+++... .++|..++
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 888877643333221 0 001267888998873 2211 1446677788887643 13455444
Q ss_pred HH--HHHHhcCCcccCCCchHHHHHHHhhhhccCCC--------CC--CCHHH--HHHHHhcccccCCCHHHHHHHHHHH
Q 040316 426 HV--CRNLLIDPALLGNPFLHRILSAAAWVSGEYVE--------FS--RNPFE--LMEALLQPRTNLLLPSIRAVYVQSV 491 (957)
Q Consensus 426 ~~--l~~lL~d~~~l~~~~~~~~l~a~aWIlGEY~~--------~i--~~p~~--iL~~LL~~~~~~es~~Vq~~iLtAl 491 (957)
+. .+..|.+ ++.. ....+.++++|++.-... +. .+|.. -+..|+. -......++|....-|+
T Consensus 603 ~~~ga~~~L~~--LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~-Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 603 STKVYWSTIEN--LMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVK-LLQLSDVESQRAVAAIF 678 (778)
T ss_dssp HSHHHHHHHHH--GGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHH-GGGCSCHHHHHHHHHHH
T ss_pred HhcCHHHHHHH--HHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 42 3333322 1111 234677778887653321 11 12321 1333322 12346777777666555
Q ss_pred HHH
Q 040316 492 FKV 494 (957)
Q Consensus 492 ~Kl 494 (957)
+=+
T Consensus 679 AnL 681 (778)
T 3opb_A 679 ANI 681 (778)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 62
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.12 Score=63.31 Aligned_cols=212 Identities=15% Similarity=0.131 Sum_probs=136.2
Q ss_pred HHHHHHhhhcC-CChhHHHHHHHHHHHhhhcCCCC------------cc-------------------------------
Q 040316 161 CFKRLVENLES-SEPVILSAVVGVFCELCLKDPRS------------YL------------------------------- 196 (957)
Q Consensus 161 ~~~kL~elL~D-~D~sVv~AAv~vL~EI~~~np~~------------~l------------------------------- 196 (957)
++++|.++|.+ .|.+++..++.+|..++...+.. |-
T Consensus 377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea 456 (778)
T 3opb_A 377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT 456 (778)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence 46778888885 78899999999999998855421 10
Q ss_pred CchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhH-----HHHHHHHHhhcCCcc--hHHHHHHHHHHhhc-CCcH
Q 040316 197 PLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKR-----VVEPICEFMRRTEAK--SLLFECIRTVLSSL-SEYE 268 (957)
Q Consensus 197 ~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~k-----Ll~~L~~lL~~t~a~--SVLyE~I~~Ii~~l-~~~~ 268 (957)
..+|.|..++. +.++=.+-.++++|..++.. +..... .+++|..++.+.... .+-..|+.++.... ..++
T Consensus 457 GvIp~Lv~Ll~-S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 457 ELISFLKREMH-NLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp THHHHHHHHGG-GSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred cCHHHHHHHHc-CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 01222332222 35666677777888777643 332222 345666666553322 14445555555432 2233
Q ss_pred HHH------HHHHHHHHHhhcC-CC------------chH-HHHHHHHHHHHhhhC--------hHHHhh--hhHhhccc
Q 040316 269 SAV------KLAVVKVREFLVD-DD------------PNL-KYLGLQALSIIAPKH--------LWAVLE--NKDFVIKS 318 (957)
Q Consensus 269 ~li------~l~v~~L~~fL~s-sD------------pNl-rYvaL~~L~~Iv~~~--------p~~v~~--h~~~Il~c 318 (957)
..+ .-++..|..+|.. .. +++ +|-||.+|..|+... ..++.. ....|..+
T Consensus 535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 332 1477888888862 11 112 999999999998764 224442 57888888
Q ss_pred ccCCCHHHHHHHHHHHhhhcCcc-cH-HHH-----------HHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 319 LSDGDYNIKLESLRLLMSMVSES-NV-AEI-----------SRVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 319 L~D~D~sIR~~ALeLL~~Lvne~-Nv-~~I-----------V~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
+.+.+..||+.|.+++..|+... .+ +.+ ++-|..++...|.+.|+.+..++..+++
T Consensus 615 L~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 615 MLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 88888999999999999998544 22 122 5568888888899999999988876654
No 63
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.06 E-value=0.032 Score=57.82 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcc--------
Q 040316 270 AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES-------- 341 (957)
Q Consensus 270 li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~-------- 341 (957)
.+..++..|...+.++.+.+|..+..++..++...+ +......++..+++.++.+|..++.+|..++...
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 344556666666677777788888888887776433 3444566677788888888888888888864321
Q ss_pred cHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhh
Q 040316 342 NVAEISRVLINYALKSDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 342 Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~ 375 (957)
-+..++..|...+.+.+.+.|..++.+|+.++..
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2456777788888778888888888888777643
No 64
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0057 Score=64.86 Aligned_cols=193 Identities=12% Similarity=0.185 Sum_probs=113.4
Q ss_pred HHhhcCCCccchhhhHHHHHh-hcCCC-------chHHHHHHHHHHHHh-cCCCHHHHHHHHHhhccCCchhhH-hhhH-
Q 040316 78 VEVMSSPQFFYKKIGYHAVTQ-SFNDD-------TPVILLITNQLRKDL-NSSNQFEVSLALECLSRIGNVDLA-RDLT- 146 (957)
Q Consensus 78 VelmsS~~~~~KRlGYLaas~-~~~~~-------~dlllLatNtLkKDL-~s~Np~vr~LALr~Ls~I~tpeLa-~~L~- 146 (957)
-+.++|++...|+-++..+.. ++... .+.. -++..|++-+ +++|..+|..|+++|+.+. ..+. ..+.
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la-~~l~~~~f~~ 99 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELIC-DKLKTPGFSK 99 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHH-HHHCTTTSCH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HhcccccccH
Confidence 345689999999999988887 66432 2222 2367888888 7999999999999999876 2222 2222
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcC-CCCc---c-CchHHHHHHHhhcCChHHHHHHHHH
Q 040316 147 PEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKD-PRSY---L-PLAPEFYKILVDSKNNWLLIKVLKI 221 (957)
Q Consensus 147 ~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n-p~~~---l-~Lap~L~~iL~~~~npWlqIkILkL 221 (957)
+ ....++|.+.+++.|..+.|..++..++..++..- |... + .+.+.++..|.+ . +|
T Consensus 100 ~---------y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-k-~~-------- 160 (249)
T 2qk1_A 100 D---------YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-K-TP-------- 160 (249)
T ss_dssp H---------HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-S-SH--------
T ss_pred H---------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-C-Ch--------
Confidence 2 23456778999999999999888888777777643 2110 1 122333333322 1 22
Q ss_pred HHhhccCChHHHhHHHHHHHHHhhcCCcc-hHHHHHHHHHHhhcCCcHHHH-HHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 040316 222 FAKLATLEPRLAKRVVEPICEFMRRTEAK-SLLFECIRTVLSSLSEYESAV-KLAVVKVREFLVDDDPNLKYLGLQALSI 299 (957)
Q Consensus 222 L~~l~p~ep~L~~kLl~~L~~lL~~t~a~-SVLyE~I~~Ii~~l~~~~~li-~l~v~~L~~fL~ssDpNlrYvaL~~L~~ 299 (957)
......+..|..++..+... .- + ...+ ..++..|..++.++++.+|=.|..+|..
T Consensus 161 ---------~vk~~al~~l~~~~~~~~~~~~~-------l-------~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 161 ---------QIRMECTQLFNASMKEEKDGYST-------L-------QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp ---------HHHHHHHHHHHHHHHHCCSCSHH-------H-------HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHcCCcchh-------H-------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 11112222222222211100 00 0 0123 3455667777788888888888888888
Q ss_pred HhhhCh-HHHhhhhHh
Q 040316 300 IAPKHL-WAVLENKDF 314 (957)
Q Consensus 300 Iv~~~p-~~v~~h~~~ 314 (957)
|+..-. ..+.+|...
T Consensus 218 i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 218 LIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHCSGGGHHHHHH
T ss_pred HHHHhCHHHHHHHHHH
Confidence 875433 235555554
No 65
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.95 E-value=0.23 Score=61.84 Aligned_cols=161 Identities=7% Similarity=0.005 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-----CCchHHHHHHHHHHHHhhhChHHHhhhhHhhc---cccc--CC
Q 040316 253 LFECIRTVLSSLSEYESAVKLAVVKVREFLVD-----DDPNLKYLGLQALSIIAPKHLWAVLENKDFVI---KSLS--DG 322 (957)
Q Consensus 253 LyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~s-----sDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il---~cL~--D~ 322 (957)
..+++..+..... ..++..+...+...|.+ .+...+-.+|.+|..|+..-+.....+...++ ..+. |+
T Consensus 441 ~~~~l~~~~~~~~--~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~ 518 (971)
T 2x1g_F 441 ISDTFMYCYDVLN--DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKL 518 (971)
T ss_dssp HHHHHHHHHTTCT--THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTS
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCcccc
Confidence 3445554444333 34555566666666643 45667888999998887643322223333333 2233 66
Q ss_pred CHHHHHHHHHHHhhhcC-----cccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhcc
Q 040316 323 DYNIKLESLRLLMSMVS-----ESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRI 397 (957)
Q Consensus 323 D~sIR~~ALeLL~~Lvn-----e~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~ 397 (957)
++.||..++.++..+++ .+.+..++..|+..+ + +.++..+..++..+|..-.....+-.+-.++.|.+++..
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 89999999999998764 467888888888888 3 667888888888887542222222112233333344443
Q ss_pred C--CcchHHHHHHHHHHHHHhcC
Q 040316 398 P--HCQKGEEIEHQIIDIAMRVK 418 (957)
Q Consensus 398 ~--~~~v~~eI~~~L~dIi~rvp 418 (957)
. .......+...+..++...|
T Consensus 596 ~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 596 GRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSC
T ss_pred CCCChHHHHHHHHHHHHHHHhCC
Confidence 2 12334455556666655443
No 66
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.82 E-value=0.24 Score=61.80 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=115.0
Q ss_pred CCCccchhhhHHHHHhhcCC--------Cc-----hHHHHHHHHHHHHhcCC---CHHHHHHHHHhhccCCchhhHhhhH
Q 040316 83 SPQFFYKKIGYHAVTQSFND--------DT-----PVILLITNQLRKDLNSS---NQFEVSLALECLSRIGNVDLARDLT 146 (957)
Q Consensus 83 S~~~~~KRlGYLaas~~~~~--------~~-----dlllLatNtLkKDL~s~---Np~vr~LALr~Ls~I~tpeLa~~L~ 146 (957)
+++...|.-+++++...+.. .. ++.-+.++.+..+|+++ +|++|+-|+.+++.+++. + .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-~----~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-L----T 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-S----C
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-C----C
Confidence 67788888899877665421 11 56666677788888888 999999999999998763 1 1
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc-C----------CCCccCchHHH----HHHHhhcC-
Q 040316 147 PEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLK-D----------PRSYLPLAPEF----YKILVDSK- 210 (957)
Q Consensus 147 ~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~-n----------p~~~l~Lap~L----~~iL~~~~- 210 (957)
+ +.+..+++.+...|.|+++-|..+|+.+|..++.. + .....+.++.+ +.++....
T Consensus 491 ~--------~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~ 562 (960)
T 1wa5_C 491 K--------AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGS 562 (960)
T ss_dssp H--------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCC
T ss_pred H--------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccC
Confidence 1 12344556677778888999999999999998863 2 12233444444 44444420
Q ss_pred ------ChHHHHHHH-HHHHhhccC-ChHHHhHHHHHHHHHhhc----CCcc---hHHHHHHHHHHhhcCC--cHHHHHH
Q 040316 211 ------NNWLLIKVL-KIFAKLATL-EPRLAKRVVEPICEFMRR----TEAK---SLLFECIRTVLSSLSE--YESAVKL 273 (957)
Q Consensus 211 ------npWlqIkIL-kLL~~l~p~-ep~L~~kLl~~L~~lL~~----t~a~---SVLyE~I~~Ii~~l~~--~~~li~l 273 (957)
.....+..| .++..+... .| ....+++.+..++.. ..+. .-++||+.+++..... ...+...
T Consensus 563 ~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~ 641 (960)
T 1wa5_C 563 SPEKLAENEFLMRSIFRVLQTSEDSIQP-LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDS 641 (960)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred CCCcccccHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 233333333 333333211 12 223344444444432 1121 3468888887764221 1233445
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhh
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPK 303 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~ 303 (957)
++..+...|........=-++..+..++..
T Consensus 642 ~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 642 MMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 555555556443333322255555555544
No 67
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.034 Score=58.84 Aligned_cols=181 Identities=10% Similarity=0.096 Sum_probs=112.5
Q ss_pred HHHHhcCCCHHHHHHHHHhhcc-CC--chhhHh--hhHHHHHHhhhhhhHHHHHHHHHhhh-cCCChhHHHHHHHHHHHh
Q 040316 114 LRKDLNSSNQFEVSLALECLSR-IG--NVDLAR--DLTPEVFTLLSSNAVRVCFKRLVENL-ESSEPVILSAVVGVFCEL 187 (957)
Q Consensus 114 LkKDL~s~Np~vr~LALr~Ls~-I~--tpeLa~--~L~~~V~klL~~~AvR~~~~kL~elL-~D~D~sVv~AAv~vL~EI 187 (957)
|..-+.|++...|--||..|+. +. .+++.. .=... .+.-|...| .|.|+.|+.+|+.++..+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~------------~~~~L~~~l~~D~n~~v~~~A~~al~~l 88 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN------------LLGIYGHIIQKDANIQAVALAAQSVELI 88 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH------------HHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHH------------HHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 5556789999999999988888 64 334431 00011 133355567 699999999999999999
Q ss_pred hhcCC-CCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCC
Q 040316 188 CLKDP-RSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSE 266 (957)
Q Consensus 188 ~~~np-~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~ 266 (957)
+..-. ..|.. ++....+-.+|.++.-..+..... ..+|+..++...+.
T Consensus 89 a~~l~~~~f~~--------------~y~~~llp~ll~~l~dkk~~V~~a-----------------a~~al~~i~~~~~~ 137 (249)
T 2qk1_A 89 CDKLKTPGFSK--------------DYVSLVFTPLLDRTKEKKPSVIEA-----------------IRKALLTICKYYDP 137 (249)
T ss_dssp HHHHCTTTSCH--------------HHHHHHHHHHHHGGGCCCHHHHHH-----------------HHHHHHHHHHHSCT
T ss_pred HHhcccccccH--------------HHHHHHHHHHHHHHcCCCHHHHHH-----------------HHHHHHHHHHHccc
Confidence 85432 22220 222222333454544333333222 22333444443311
Q ss_pred cHH--HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh---HHHhhh-----hHhhcccccCCCHHHHHHHHHHHhh
Q 040316 267 YES--AVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL---WAVLEN-----KDFVIKSLSDGDYNIKLESLRLLMS 336 (957)
Q Consensus 267 ~~~--li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p---~~v~~h-----~~~Il~cL~D~D~sIR~~ALeLL~~ 336 (957)
... ....++..|...|.++.+.+|.-+|..|..++...+ ..+..| ...+..+++|++..+|..|.+.+..
T Consensus 138 ~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 138 LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 000 033466777788888889999999999999987765 444444 4555678899999999999888776
Q ss_pred h
Q 040316 337 M 337 (957)
Q Consensus 337 L 337 (957)
+
T Consensus 218 i 218 (249)
T 2qk1_A 218 L 218 (249)
T ss_dssp H
T ss_pred H
Confidence 5
No 68
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.75 E-value=0.16 Score=62.88 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=35.1
Q ss_pred hHHHHHHHhhhhccCCCCCC-CHH---HHHHHHhcccccCCCHHHHHHHHHHHHHHHHHh
Q 040316 443 LHRILSAAAWVSGEYVEFSR-NPF---ELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFC 498 (957)
Q Consensus 443 ~~~~l~a~aWIlGEY~~~i~-~p~---~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~ 498 (957)
.+.+...++|++|.|++.+. ++. .++..++. .+. .+.|+.....|+.++.-.|
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~-~l~--~~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLH-ALG--NPELSVSSVSTLKKICREC 558 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHH-HTT--CGGGHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH-HhC--CchHHHHHHHHHHHHHHHH
Confidence 45688999999999988654 332 23344433 222 2678888888888876544
No 69
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.074 Score=54.39 Aligned_cols=193 Identities=14% Similarity=0.144 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhccCCc--hhhHhhhHHHHHHhhhh-hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCch
Q 040316 123 QFEVSLALECLSRIGN--VDLARDLTPEVFTLLSS-NAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLA 199 (957)
Q Consensus 123 p~vr~LALr~Ls~I~t--peLa~~L~~~V~klL~~-~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~La 199 (957)
=.++..||+.++.|.- |++.+.+...++-++.- +++ -........|-.++.-+|+...+.+
T Consensus 46 wtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaI----------------pltqeIa~a~G~la~i~Pe~v~~vV 109 (253)
T 2db0_A 46 WTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAI----------------PLTQEIAKAFGQMAKEKPELVKSMI 109 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSH----------------HHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccC----------------chHHHHHHHHhHHHHhCHHHHHhhH
Confidence 4688999999998753 67777666665555443 233 2233334445555666777666777
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 040316 200 PEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVR 279 (957)
Q Consensus 200 p~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~ 279 (957)
|.+|.-+.- .+|=..|.+=-.|....+-+|++...+.+-+..++.+ .+..=-..+.+.|-....++...+.-...+|.
T Consensus 110 p~lfanyri-gd~kikIn~~yaLeeIaranP~l~~~v~rdi~smlts-kd~~Dkl~aLnFi~alGen~~~yv~PfLprL~ 187 (253)
T 2db0_A 110 PVLFANYRI-GDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSS-KNREDKLTALNFIEAMGENSFKYVNPFLPRII 187 (253)
T ss_dssp HHHHHHSCC-CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHH
T ss_pred HHHHHHHhc-CCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhccCccccCcchHHHH
Confidence 777766543 4777777777788888888888877777777666654 44444445555544434455666666788899
Q ss_pred HhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHH
Q 040316 280 EFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLL 334 (957)
Q Consensus 280 ~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL 334 (957)
.+|.+.|--+|--+..+|..++..+|. +.+-+...+.-++|+..-+....-+-|
T Consensus 188 aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 188 NLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred HHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999998 777788888889998666655443333
No 70
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.67 E-value=0.057 Score=58.81 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=102.9
Q ss_pred HHHHHh-hhcCCChhHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHh-
Q 040316 162 FKRLVE-NLESSEPVILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAK- 234 (957)
Q Consensus 162 ~~kL~e-lL~D~D~sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~- 234 (957)
++.|.. +|.++++.|...|+.+|..++..+|..- ...+|.|+++|...+++=.+.+.+..|..+++..+....
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 567888 9999999999999999999998887521 245688888887655666677777788887766543222
Q ss_pred ----HHHHHHHHHhhcCCcchHHHHHHHHHHhhcC---CcH-HHH-HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh
Q 040316 235 ----RVVEPICEFMRRTEAKSLLFECIRTVLSSLS---EYE-SAV-KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL 305 (957)
Q Consensus 235 ----kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~---~~~-~li-~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p 305 (957)
..+++|..++++ ....|..+++.++.+... +.. .++ .-++..|..+|.+.++.++..++.+|..|+...+
T Consensus 163 ~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 345677777765 456677777766654321 111 222 2377778888888888888888888888887655
Q ss_pred HHHh
Q 040316 306 WAVL 309 (957)
Q Consensus 306 ~~v~ 309 (957)
..+.
T Consensus 242 ~~~~ 245 (296)
T 1xqr_A 242 QGVR 245 (296)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5443
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.53 E-value=2.6 Score=52.78 Aligned_cols=250 Identities=12% Similarity=0.031 Sum_probs=142.6
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHhhccCCch---hhHhhhHHHHHHhhh------hhhHH-----------------HH
Q 040316 111 TNQLRKDLN---SSNQFEVSLALECLSRIGNV---DLARDLTPEVFTLLS------SNAVR-----------------VC 161 (957)
Q Consensus 111 tNtLkKDL~---s~Np~vr~LALr~Ls~I~tp---eLa~~L~~~V~klL~------~~AvR-----------------~~ 161 (957)
...|.+-|- +.++++++=||-+|+-|..- +....|.+.|..-=. ++.+| .+
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev 473 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEV 473 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHH
Confidence 455666665 67899999999888876543 233334443322100 11122 13
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHH--hhhcCCCCccCchHHHHHHHhh-cCChHHHHHHHHHHHhhccCChHHHhHHHH
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCE--LCLKDPRSYLPLAPEFYKILVD-SKNNWLLIKVLKIFAKLATLEPRLAKRVVE 238 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~E--I~~~np~~~l~Lap~L~~iL~~-~~npWlqIkILkLL~~l~p~ep~L~~kLl~ 238 (957)
+..|...|.|++..+-..|.-.+-- +..-|.+ .+..+++.+.+ ..+.|...-.+ -|+.+...+++....+++
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~----ai~~LL~~~~e~~~e~vrR~aal-gLGll~~g~~e~~~~li~ 548 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE----AIHDMFTYSQETQHGNITRGLAV-GLALINYGRQELADDLIT 548 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH----HHHHHHHHHHHCSCHHHHHHHHH-HHHHHTTTCGGGGHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH----HHHHHHHHHhccCcHHHHHHHHH-HHHhhhCCChHHHHHHHH
Confidence 5667777877776333222222222 2222322 23344444433 34455443222 234334445554444444
Q ss_pred HHHHHhhcCCcchHHHHHHHHHH--hhcCCcHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHhhhChHHHhhhhHhh
Q 040316 239 PICEFMRRTEAKSLLFECIRTVL--SSLSEYESAVKLAVVKVREFL-VDDDPNLKYLGLQALSIIAPKHLWAVLENKDFV 315 (957)
Q Consensus 239 ~L~~lL~~t~a~SVLyE~I~~Ii--~~l~~~~~li~l~v~~L~~fL-~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~I 315 (957)
.+. ...++.+=|.++-++. .....+. .+++.|...+ .+.+.++|-.|..+|..|....|+.+.+....
T Consensus 549 ~L~----~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~- 619 (963)
T 4ady_A 549 KML----ASDESLLRYGGAFTIALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL- 619 (963)
T ss_dssp HHH----HCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT-
T ss_pred HHH----hCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH-
Confidence 433 3233445555443321 1122222 3555444444 56778899999999999988787665544433
Q ss_pred cccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHhhh
Q 040316 316 IKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCCRN 376 (957)
Q Consensus 316 l~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~ 376 (957)
...+.|+.||+.+---|-.++-.+.-..++.-|..+..+.|...|..++.+++.+....
T Consensus 620 --L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 620 --LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp --GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred --HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 33567899998876666555554555788888888888999999999999998876653
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.51 E-value=0.084 Score=61.06 Aligned_cols=203 Identities=11% Similarity=0.025 Sum_probs=138.5
Q ss_pred CChhHHHHHHHHHHHhhhcCCCC---c---cCchHHHHHHHhhcCChHHHHHHHHHHHhhccC-ChHHHhH-----HHHH
Q 040316 172 SEPVILSAVVGVFCELCLKDPRS---Y---LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATL-EPRLAKR-----VVEP 239 (957)
Q Consensus 172 ~D~sVv~AAv~vL~EI~~~np~~---~---l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~-ep~L~~k-----Ll~~ 239 (957)
.++.+...|..+|..++..++.. + ...+|.|+++|. +.++=.+......|..++-. ++.-... .+++
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~ 290 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHH
Confidence 35678889999999998765421 1 234788888887 46777888888888887764 4433222 4567
Q ss_pred HHHHhhcCCcchHHHHHHHHHHhhcC---Cc-HHHH--HHHHHHHHHhhcCCCc----hHHHHHHHHHHHHhh---hChH
Q 040316 240 ICEFMRRTEAKSLLFECIRTVLSSLS---EY-ESAV--KLAVVKVREFLVDDDP----NLKYLGLQALSIIAP---KHLW 306 (957)
Q Consensus 240 L~~lL~~t~a~SVLyE~I~~Ii~~l~---~~-~~li--~l~v~~L~~fL~ssDp----NlrYvaL~~L~~Iv~---~~p~ 306 (957)
|..+|.++....+.-.++.++...-. ++ ..+. .-++..|..+|.+.++ +++.-+..+|..|+. ..+.
T Consensus 291 LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 370 (458)
T 3nmz_A 291 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 370 (458)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH
Confidence 77776554556677777776655321 11 1222 2367778888865544 377777777777764 3443
Q ss_pred ---HHhh--hhHhhcccccCCCHHHHHHHHHHHhhhc--CcccHHHHH-----HHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 307 ---AVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMV--SESNVAEIS-----RVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 307 ---~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lv--ne~Nv~~IV-----~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
.+.. -...++..|.+++..++..|.-.|..++ +++|...|+ .-|.+.+...+...+..+..+|..++.
T Consensus 371 ~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 371 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 2222 2466778889999999999999999998 567777765 456667777788899999999988876
Q ss_pred h
Q 040316 375 R 375 (957)
Q Consensus 375 ~ 375 (957)
.
T Consensus 451 ~ 451 (458)
T 3nmz_A 451 N 451 (458)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.40 E-value=0.1 Score=64.96 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=32.9
Q ss_pred hHHHHHHHhhhhccCCCCCCC-H---HHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHh
Q 040316 443 LHRILSAAAWVSGEYVEFSRN-P---FELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFC 498 (957)
Q Consensus 443 ~~~~l~a~aWIlGEY~~~i~~-p---~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~ 498 (957)
.+.+...++|++|.|++.+.. + ..++..++. .+ . +.|+...-.|+.++.-.|
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~-~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVR-GL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHH-HH-H--SSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-Hh-C--hHHHHHHHHHHHHHHHHH
Confidence 467889999999999887653 2 344554443 22 2 556776677777666433
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.40 E-value=0.13 Score=57.43 Aligned_cols=212 Identities=12% Similarity=0.089 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc-CCCC---c-
Q 040316 121 SNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLK-DPRS---Y- 195 (957)
Q Consensus 121 ~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~-np~~---~- 195 (957)
.++.++-.|..+|.++...+- .....+. ...-++|.|..+|.+.++.|...|+.+|..++.. ++.. .
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~------~~k~~i~--~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~ 167 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDV------ANKATLC--SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR 167 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCH------HHHHHHH--HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCH------HHHHHHH--HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 345666667667666653211 0000010 0113478899999999999999999999999874 3321 1
Q ss_pred -cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHH------hHHHHHHHHHhhcCCcc---hHHHHHHHHHHhhcC
Q 040316 196 -LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLA------KRVVEPICEFMRRTEAK---SLLFECIRTVLSSLS 265 (957)
Q Consensus 196 -l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~------~kLl~~L~~lL~~t~a~---SVLyE~I~~Ii~~l~ 265 (957)
...+|.|+++|....++=.+-..+..|..++...+... ...+++|..++++.... .+..+++.++.....
T Consensus 168 ~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~ 247 (354)
T 3nmw_A 168 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247 (354)
T ss_dssp HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh
Confidence 24578999987765666666677777777776333221 23567888888763322 466666665544211
Q ss_pred ---CcHHHHH-----HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH---HHhhh--hHhhcccccCCCHHHHHHHHH
Q 040316 266 ---EYESAVK-----LAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW---AVLEN--KDFVIKSLSDGDYNIKLESLR 332 (957)
Q Consensus 266 ---~~~~li~-----l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~---~v~~h--~~~Il~cL~D~D~sIR~~ALe 332 (957)
..++..+ -++..|..+|.+.+..++--+..+|..|+..++. .+.+. +..+..+|.+.+..||..|..
T Consensus 248 ~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~ 327 (354)
T 3nmw_A 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327 (354)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred hccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 2233222 2577888888888999999999999999865543 33332 567778888999999999999
Q ss_pred HHhhhcCc
Q 040316 333 LLMSMVSE 340 (957)
Q Consensus 333 LL~~Lvne 340 (957)
.|..|+..
T Consensus 328 aL~nL~~~ 335 (354)
T 3nmw_A 328 ALRNLMAN 335 (354)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99888754
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.32 E-value=0.17 Score=54.95 Aligned_cols=141 Identities=9% Similarity=0.063 Sum_probs=106.0
Q ss_pred hHHHHH-HHhhcCChHHHHHHHHHHHhhccCChHHHhH-----HHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHH-
Q 040316 199 APEFYK-ILVDSKNNWLLIKVLKIFAKLATLEPRLAKR-----VVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAV- 271 (957)
Q Consensus 199 ap~L~~-iL~~~~npWlqIkILkLL~~l~p~ep~L~~k-----Ll~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li- 271 (957)
+|.|+. +|. ++++=.+...+..++.++..+|..... .+++|..++++.....+.-+|+.++......++...
T Consensus 83 l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 83 MHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 567777 664 578888888999999998888765443 457888888765556788888777766543333322
Q ss_pred ----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHH---Hhh--hhHhhcccccCCCHHHHHHHHHHHhhhcCc
Q 040316 272 ----KLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWA---VLE--NKDFVIKSLSDGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 272 ----~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~---v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne 340 (957)
.-++..|..+|.+.++.++--++.+|..|+..++.. +.+ -...++.+|.++|..++..++..|..|++.
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 136678888888899999999999999998766532 222 456677889999999999999999999876
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.10 E-value=0.0027 Score=59.99 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=73.4
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHH
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINY 353 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~y 353 (957)
....|..+|.+.++.+|+.++..|..+... . ...++.+|+|+|..+|..|+..|..+.++ ..+..|...
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~----~a~~~L~~~ 81 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDE--A-----FEPLLESLSNEDWRIRGAAAWIIGNFQDE----RAVEPLIKL 81 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSST--T-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----HHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCH----HHHHHHHHH
Confidence 456677788889999999999888766432 1 35667788999999999999999988764 346667777
Q ss_pred hhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCC
Q 040316 354 ALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPH 399 (957)
Q Consensus 354 l~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~ 399 (957)
+.+.++.+|..++.+++.++.. . .+..|.+++....
T Consensus 82 L~d~~~~VR~~A~~aL~~~~~~-------~---a~~~L~~~l~d~~ 117 (131)
T 1te4_A 82 LEDDSGFVRSGAARSLEQIGGE-------R---VRAAMEKLAETGT 117 (131)
T ss_dssp HHHCCTHHHHHHHHHHHHHCSH-------H---HHHHHHHHTTSCC
T ss_pred HcCCCHHHHHHHHHHHHHhCcH-------H---HHHHHHHHHhCCC
Confidence 7788999999999998876421 1 5666777665433
No 77
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.04 E-value=0.85 Score=57.51 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=38.7
Q ss_pred HHHHH-HHhhhhccCCCCCC-CH---HHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhh
Q 040316 444 HRILS-AAAWVSGEYVEFSR-NP---FELMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCA 499 (957)
Q Consensus 444 ~~~l~-a~aWIlGEY~~~i~-~p---~~iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~~ 499 (957)
..+++ .++|++|.|+..+. ++ ..++..++. .+...++.||...-.|+.++.-.|.
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~-~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFE-FMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34454 68999999998654 33 234555554 3555578999999999999887754
No 78
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.01 E-value=3.1 Score=52.42 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=39.8
Q ss_pred CchHHHHHHHhhhhccCCCCCCC----HHHHHHHHhccc-ccCCCHHHHHHHHHHHHHHHHHh
Q 040316 441 PFLHRILSAAAWVSGEYVEFSRN----PFELMEALLQPR-TNLLLPSIRAVYVQSVFKVLIFC 498 (957)
Q Consensus 441 ~~~~~~l~a~aWIlGEY~~~i~~----p~~iL~~LL~~~-~~~es~~Vq~~iLtAl~Klf~~~ 498 (957)
...+.+...++|++|.|+..+.. -+.++..++.++ +....+.||...-.++.++.-.|
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 34677889999999999998753 345666666532 33344568887777777766554
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.87 E-value=0.27 Score=52.01 Aligned_cols=164 Identities=9% Similarity=0.129 Sum_probs=119.3
Q ss_pred cCChHHHHHHHHHHHhhccC-----ChHHHhHHHHHHHHHhhcCCcchHH---HHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 040316 209 SKNNWLLIKVLKIFAKLATL-----EPRLAKRVVEPICEFMRRTEAKSLL---FECIRTVLSSLSEYESAVKLAVVKVRE 280 (957)
Q Consensus 209 ~~npWlqIkILkLL~~l~p~-----ep~L~~kLl~~L~~lL~~t~a~SVL---yE~I~~Ii~~l~~~~~li~l~v~~L~~ 280 (957)
..|+-.+...|-++..+... ..+..+++++.+..++.+ .+.-|. ..|+++++.+.+-++..+..++..|..
T Consensus 44 dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~d 122 (265)
T 3b2a_A 44 EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVS 122 (265)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 46667777777666655432 223345566666666544 444343 567777777777677777778899999
Q ss_pred hhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcc----cHHHHHHHHHHHhhh
Q 040316 281 FLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES----NVAEISRVLINYALK 356 (957)
Q Consensus 281 fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~----Nv~~IV~ELl~yl~~ 356 (957)
.+.+.++-++.-+...+..+-... ....-.+.++..+..+|..+|.-+|.++..|++.+ ++..|++|+-..+..
T Consensus 123 lik~~~~il~~eaae~Lgklkv~~--~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~ 200 (265)
T 3b2a_A 123 LLESPDDMMRIETIDVLSKLQPLE--DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQN 200 (265)
T ss_dssp HTTSCCHHHHHHHHHHHHHCCBSC--CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTC
T ss_pred HhcCCCchHHHHHHHHhCcCCccc--chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcC
Confidence 998888888888888888882222 12233455666678999999999999999998765 499999999999999
Q ss_pred cChHHHHHHHHHHHHHHhh
Q 040316 357 SDPEFCNQILGSILSTCCR 375 (957)
Q Consensus 357 sD~~~r~elI~aI~~ic~~ 375 (957)
.|+.++..++..+..+...
T Consensus 201 eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 201 DNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 9999999999888777654
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.83 E-value=1.6 Score=54.69 Aligned_cols=276 Identities=12% Similarity=0.071 Sum_probs=149.4
Q ss_pred CCCccchhhhHHHHHhhcCCC-chHHHHHHHHHHHHhc-CC---CHHHHHHHHHhhccC----CchhhHhhhHHHHHHhh
Q 040316 83 SPQFFYKKIGYHAVTQSFNDD-TPVILLITNQLRKDLN-SS---NQFEVSLALECLSRI----GNVDLARDLTPEVFTLL 153 (957)
Q Consensus 83 S~~~~~KRlGYLaas~~~~~~-~dlllLatNtLkKDL~-s~---Np~vr~LALr~Ls~I----~tpeLa~~L~~~V~klL 153 (957)
|++...|-=+.+++....... .+..-+..+.|..+-. .. ++.+|.-|.-+|+-+ ..+++.+.|. .+|
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~----~~L 481 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALK----EVL 481 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH----HHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHH----HHH
Confidence 444455665666666544333 2444455566655421 01 255554444466654 3455555444 444
Q ss_pred hhh-h-HH--------H---------HHHHHHhh-hcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChH
Q 040316 154 SSN-A-VR--------V---------CFKRLVEN-LESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNW 213 (957)
Q Consensus 154 ~~~-A-vR--------~---------~~~kL~el-L~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npW 213 (957)
.++ + ++ . +...|... .++.+-.|..+++..|--+.-.++. .++.+++.|..+.+|+
T Consensus 482 ~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e----~~~~li~~L~~~~dp~ 557 (963)
T 4ady_A 482 YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE----LADDLITKMLASDESL 557 (963)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG----GGHHHHHHHHHCSCHH
T ss_pred hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH----HHHHHHHHHHhCCCHH
Confidence 431 1 11 1 12333333 3455666777766666666665654 4788899998877777
Q ss_pred HHHHHHHHHH--hhccCChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHH
Q 040316 214 LLIKVLKIFA--KLATLEPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKY 291 (957)
Q Consensus 214 lqIkILkLL~--~l~p~ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrY 291 (957)
..--..-.++ .....++.-.++|+..+.+ . ...-|-..++-.+-......++ .+...+..+..+.++++||
T Consensus 558 vRygaa~alglAyaGTGn~~aIq~LL~~~~~---d-~~d~VRraAViaLGlI~~g~~e---~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 558 LRYGGAFTIALAYAGTGNNSAVKRLLHVAVS---D-SNDDVRRAAVIALGFVLLRDYT---TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH---C-SCHHHHHHHHHHHHHHTSSSCS---SHHHHTTTGGGCSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc---C-CcHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHhcCCHHHHH
Confidence 6544333332 2233455544445544432 1 2222333333222211111122 2333334455788999999
Q ss_pred HHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhc---Ccc---cHHHHHHHHHHHhhh--cCh--HH
Q 040316 292 LGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMV---SES---NVAEISRVLINYALK--SDP--EF 361 (957)
Q Consensus 292 vaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lv---ne~---Nv~~IV~ELl~yl~~--sD~--~~ 361 (957)
-+-.+|..+..-.|. ..-++.+....+|+|..+|..|+.-|-.+. |+. .+..+.+.|..|+.+ .|. -|
T Consensus 631 gAalALGli~aGn~~--~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 631 GTAFALGIACAGKGL--QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHHHHTSSSCC--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHHhccCCCc--HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999999876653 112235555678999999998776665444 333 488889999999875 233 34
Q ss_pred HHHHHHHHHHHHhh
Q 040316 362 CNQILGSILSTCCR 375 (957)
Q Consensus 362 r~elI~aI~~ic~~ 375 (957)
...+...|+.+..+
T Consensus 709 ga~iAqGll~aG~~ 722 (963)
T 4ady_A 709 GACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHTTGGG
T ss_pred HHHHHHHHHhcCCC
Confidence 44455555544433
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.99 E-value=0.036 Score=52.08 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHh
Q 040316 275 VVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYA 354 (957)
Q Consensus 275 v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl 354 (957)
+..|..+|.+.++.+|+.++.+|..+.. +. ....++.+|+|+|..+|..|+..|-.+.++ ..+..|...+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~----a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~----~a~~~L~~~l 113 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--ER----AVEPLIKLLEDDSGFVRSGAARSLEQIGGE----RVRAAMEKLA 113 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH----HHHHHHHHHHHCCTHHHHHHHHHHHHHCSH----HHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH----HHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----HHHHHHHHHH
Confidence 3667778888899999999998887753 22 245566677899999999999999888753 4566677777
Q ss_pred hhcChHHHHHHHHHHH
Q 040316 355 LKSDPEFCNQILGSIL 370 (957)
Q Consensus 355 ~~sD~~~r~elI~aI~ 370 (957)
.+.|..+|..++.++.
T Consensus 114 ~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 114 ETGTGFARKVAVNYLE 129 (131)
T ss_dssp TSCCTHHHHHHHHHGG
T ss_pred hCCCHHHHHHHHHHHH
Confidence 7778888877777664
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.97 E-value=7.2 Score=45.18 Aligned_cols=167 Identities=12% Similarity=0.096 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhhcCcc------cHHHHH--HHHHHHhh------hcChHHHHHHH--HHHHHHHhhhhcccccchHHH
Q 040316 324 YNIKLESLRLLMSMVSES------NVAEIS--RVLINYAL------KSDPEFCNQIL--GSILSTCCRNLYEVIVDFDWY 387 (957)
Q Consensus 324 ~sIR~~ALeLL~~Lvne~------Nv~~IV--~ELl~yl~------~sD~~~r~elI--~aI~~ic~~~~y~~~~dfeWy 387 (957)
.-|-|-++-++..+++.. ++.+++ ..++..+. -.|+++..++- ..++.-. +...+.|+-|
T Consensus 286 EKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~----~~~ltsfDeY 361 (480)
T 1ho8_A 286 EKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENE----YQELTSFDEY 361 (480)
T ss_dssp HHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHH----HHTCCHHHHH
T ss_pred chhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHH----HHhcccHHHH
Confidence 445566677777877765 223222 22233332 25788777644 2333222 2335678888
Q ss_pred HHHHH-HhhccCCcchHHHHHHHHHHHHHhcCcchHHHHHHHHHHhcCCc---ccCCCchHHHHHHHhhhhccCCCCCCC
Q 040316 388 ASLLG-EMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALVHVCRNLLIDPA---LLGNPFLHRILSAAAWVSGEYVEFSRN 463 (957)
Q Consensus 388 vdvLl-~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av~~l~~lL~d~~---~l~~~~~~~~l~a~aWIlGEY~~~i~~ 463 (957)
..=+. ..+.-+..+..+.-|.. -+.|..+-.-.+++.++++|.... .......+..+++++.=+|||+.+.++
T Consensus 362 ~~El~sG~L~WSP~H~se~FW~E---Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~ 438 (480)
T 1ho8_A 362 VAELDSKLLCWSPPHVDNGFWSD---NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE 438 (480)
T ss_dssp HHHHHHTCCCCCGGGGCHHHHHH---HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcCCcccCCCccchhHHHH---HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc
Confidence 86544 45555544545566654 335555656678899998885210 000123577899999999999999888
Q ss_pred HHHHHHHH-----hcccccCCCHHHHHHHHHHHHHHHHH
Q 040316 464 PFELMEAL-----LQPRTNLLLPSIRAVYVQSVFKVLIF 497 (957)
Q Consensus 464 p~~iL~~L-----L~~~~~~es~~Vq~~iLtAl~Klf~~ 497 (957)
...+++.+ +..-.....++||-..|.|+-|+..+
T Consensus 439 gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 439 SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 76665431 11124557899999999999998765
No 83
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.50 E-value=0.77 Score=53.10 Aligned_cols=126 Identities=13% Similarity=0.023 Sum_probs=88.6
Q ss_pred CCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHH
Q 040316 284 DDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCN 363 (957)
Q Consensus 284 ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~ 363 (957)
.+++..|-+|-..+.+..+.+|++-..-++..+.+..|.|..||..|+.=|..+|..+++..|+.-|.+.+...|+.=..
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~ 118 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFN 118 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHHHH
Confidence 45677777777777888888888888888888888899999999999999999999999999999999999876654333
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHh
Q 040316 364 QILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMR 416 (957)
Q Consensus 364 elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~r 416 (957)
.+-.++..+-.. |..-.+..|+..+..+...+.+.++..|..-+..
T Consensus 119 ~V~~sL~sllk~-------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 119 LVNNALLSIFKM-------DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp HHHHHHHHHHHH-------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhc-------ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence 333444443332 2222455555544444444555555555554443
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.2 Score=53.17 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=70.7
Q ss_pred HHHhhcCCCccchhhhHHHHHhhcCCCchH---------HHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHH
Q 040316 77 AVEVMSSPQFFYKKIGYHAVTQSFNDDTPV---------ILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTP 147 (957)
Q Consensus 77 VVelmsS~~~~~KRlGYLaas~~~~~~~dl---------llLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~ 147 (957)
.-+-+.|++...|.=||-.+...+...+.. ..-.+..++|-+.|+|..+...||.++..+...-......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~- 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK- 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC-
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc-
Confidence 346788999999999999887766543211 1123457889999999999999998887653311000000
Q ss_pred HHHHhhhhhhHHHHHHHHHhh-hcCCChhHHHHHHHHHHHhhhc
Q 040316 148 EVFTLLSSNAVRVCFKRLVEN-LESSEPVILSAVVGVFCELCLK 190 (957)
Q Consensus 148 ~V~klL~~~AvR~~~~kL~el-L~D~D~sVv~AAv~vL~EI~~~ 190 (957)
.......+..+++.|.++ |.|..+.+..+|+.++..++..
T Consensus 93 ---~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 93 ---NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred ---cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 000001223456777776 7899999999988888777653
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.47 E-value=5.3 Score=42.83 Aligned_cols=170 Identities=17% Similarity=0.129 Sum_probs=96.7
Q ss_pred HHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHh---hcCChHHHHHHHHHHHhh----ccC----ChHHH
Q 040316 165 LVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILV---DSKNNWLLIKVLKIFAKL----ATL----EPRLA 233 (957)
Q Consensus 165 L~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~---~~~npWlqIkILkLL~~l----~p~----ep~L~ 233 (957)
+..+|-+.|..--.+|+..|.+....++.......-.+++-++ -..|+=...+.|++|..+ ... .+..+
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 4455556666666667777777666655422111111232221 123444555666555443 222 23334
Q ss_pred hHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhh-
Q 040316 234 KRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENK- 312 (957)
Q Consensus 234 ~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~- 312 (957)
..+++.+.+-+.. +..-+.+.++.++..+... .-.......+..-+.++..-.|--.|..+..++..|.-......
T Consensus 131 ~~~lP~LveKlGd--~k~~vR~~~r~il~~l~~v-~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~ 207 (266)
T 2of3_A 131 SAFVPYLLLKTGE--AKDNMRTSVRDIVNVLSDV-VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS 207 (266)
T ss_dssp HHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGC
T ss_pred HHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 4556665554432 3344566665554432110 00122344444445777788888888888888887643345567
Q ss_pred --HhhcccccCCCHHHHHHHHHHHhhh
Q 040316 313 --DFVIKSLSDGDYNIKLESLRLLMSM 337 (957)
Q Consensus 313 --~~Il~cL~D~D~sIR~~ALeLL~~L 337 (957)
..|..+++|+|..||..|+..+..+
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999988644
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.34 E-value=20 Score=44.12 Aligned_cols=317 Identities=9% Similarity=0.069 Sum_probs=169.1
Q ss_pred cCCCccchhhhHHHHHhhcCCC----chHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhh
Q 040316 82 SSPQFFYKKIGYHAVTQSFNDD----TPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNA 157 (957)
Q Consensus 82 sS~~~~~KRlGYLaas~~~~~~----~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~A 157 (957)
++++...|..++.++....+.- .+.+.-+++.+ -.+.++++.+|.-|+.+++.+..- +... + +.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~-l~~~--~--------~~ 526 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEW-LADH--P--------VM 526 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHH-HHHC--H--------HH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHH-HHhC--H--------HH
Confidence 5667777877777766554321 22322233322 255667888999999999887631 1100 0 12
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHh----h-cCChHHHHHHHHHHHhhccCC-hH
Q 040316 158 VRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILV----D-SKNNWLLIKVLKIFAKLATLE-PR 231 (957)
Q Consensus 158 vR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~----~-~~npWlqIkILkLL~~l~p~e-p~ 231 (957)
+..+++.|...|.+ +.|..+|+.+|..++..-+..+.+.++.++..|. . ....=.+..+++.++.....- +.
T Consensus 527 l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 527 INSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 33345566666654 8899999999999988766666666666665543 2 134456677777777765322 12
Q ss_pred ----HHhHHHHHHHHHhhc---CC-c------chHHHHHHHHHHhhcCC---------------------c--HHHHHHH
Q 040316 232 ----LAKRVVEPICEFMRR---TE-A------KSLLFECIRTVLSSLSE---------------------Y--ESAVKLA 274 (957)
Q Consensus 232 ----L~~kLl~~L~~lL~~---t~-a------~SVLyE~I~~Ii~~l~~---------------------~--~~li~l~ 274 (957)
....+++++...+.. +. + ....++|+.+++..+.. . ..+.+.+
T Consensus 605 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (963)
T 2x19_B 605 EILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV 684 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH
Confidence 233455555444432 11 1 13467788777765431 1 1133445
Q ss_pred HHHHHHhhc--CCCchHHHHHHHHHHHHhhhChHHHhhhhHhhc----ccccC-CCHHHHHHHHHHHhhhcC----cc--
Q 040316 275 VVKVREFLV--DDDPNLKYLGLQALSIIAPKHLWAVLENKDFVI----KSLSD-GDYNIKLESLRLLMSMVS----ES-- 341 (957)
Q Consensus 275 v~~L~~fL~--ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il----~cL~D-~D~sIR~~ALeLL~~Lvn----e~-- 341 (957)
...+..++. ..++.+.-.++..+..++...+..+.++...++ ..+.. +.. ..|.++..++. ..
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~~~ 760 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEPAH 760 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCcch
Confidence 555555552 346677777777777776554433333333322 22221 211 24455555543 22
Q ss_pred --cHHHHHHHHHHHh----h---hcChHHHHHHHHHHHHHHhhhhcccc---cc-hHHHHHHHHHhhccCCcchHHHHHH
Q 040316 342 --NVAEISRVLINYA----L---KSDPEFCNQILGSILSTCCRNLYEVI---VD-FDWYASLLGEMVRIPHCQKGEEIEH 408 (957)
Q Consensus 342 --Nv~~IV~ELl~yl----~---~sD~~~r~elI~aI~~ic~~~~y~~~---~d-feWyvdvLl~Ll~~~~~~v~~eI~~ 408 (957)
.+..++..+...+ . ..+++.+.....-+..++.. .+... +. +.-.++.++..+......+...+..
T Consensus 761 ~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~-~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~ 839 (963)
T 2x19_B 761 FPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKR-KPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCG 839 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH-CGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHh-CcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2444444444432 1 13578888776655555433 22211 22 5556666666665544445555666
Q ss_pred HHHHHHHhc
Q 040316 409 QIIDIAMRV 417 (957)
Q Consensus 409 ~L~dIi~rv 417 (957)
.+.+++...
T Consensus 840 ~l~~l~~~~ 848 (963)
T 2x19_B 840 FFTELLPRC 848 (963)
T ss_dssp HHHHHGGGT
T ss_pred HHHHHHhcC
Confidence 666666543
No 87
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.17 E-value=16 Score=42.42 Aligned_cols=261 Identities=14% Similarity=0.122 Sum_probs=153.9
Q ss_pred HHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhh
Q 040316 74 AFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLL 153 (957)
Q Consensus 74 ~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL 153 (957)
|-.|+... ..+-..||++--.+..||..-|++.--++|++..=+.+.+.-+|.-|++.|..++..+.+
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i----------- 98 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENL----------- 98 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCH-----------
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhh-----------
Confidence 34444433 345889999999999999999999999999999888899999999999999999875332
Q ss_pred hhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhc-cCC---
Q 040316 154 SSNAVRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLA-TLE--- 229 (957)
Q Consensus 154 ~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~-p~e--- 229 (957)
..+.+-|.++|..+|+..+.++=++|.++.+.+|+.- .-.+|..+.+ .++-.--++|+++.... +..
T Consensus 99 -----~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~t---l~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~ 169 (507)
T 3u0r_A 99 -----PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGT---LGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEV 169 (507)
T ss_dssp -----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTT
T ss_pred -----hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHH---HHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhh
Confidence 2233446778888899999899999999999988742 2345555554 46778888898886533 322
Q ss_pred --hHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhc---CC---cHHHHHHHHHHHH--HhhcCCCchHHHHHHHHHHH
Q 040316 230 --PRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSL---SE---YESAVKLAVVKVR--EFLVDDDPNLKYLGLQALSI 299 (957)
Q Consensus 230 --p~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l---~~---~~~li~l~v~~L~--~fL~ssDpNlrYvaL~~L~~ 299 (957)
.+.-.-+.+.+..+|+-. .+.-|.-+-.++..+ .. ..+++..+.+... .-+..+|++.-==.+.++..
T Consensus 170 l~~E~E~~i~~~ikK~L~DV--T~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ 247 (507)
T 3u0r_A 170 LTKEVEELILTESKKVLEDV--TGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQ 247 (507)
T ss_dssp SCHHHHHHHHHHHHHHTTSC--CHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHH
Confidence 222233444444445321 222222222222221 11 1122222222210 01122333321111112222
Q ss_pred Hhh------hChHHHhhhhHhhcccccCCCHH-----HHHHHHHHHhhhc---C-----cccHHHHHHHHHHHhhhc
Q 040316 300 IAP------KHLWAVLENKDFVIKSLSDGDYN-----IKLESLRLLMSMV---S-----ESNVAEISRVLINYALKS 357 (957)
Q Consensus 300 Iv~------~~p~~v~~h~~~Il~cL~D~D~s-----IR~~ALeLL~~Lv---n-----e~Nv~~IV~ELl~yl~~s 357 (957)
-+. ....+|.-....|+..+++-+.. +|..-|.++.-|+ . ...+..|.+-|+.|+...
T Consensus 248 ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~ 324 (507)
T 3u0r_A 248 AVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLP 324 (507)
T ss_dssp HGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCC
Confidence 111 12356666667777777764343 6666666665554 3 224566667777777643
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.31 E-value=1.6 Score=46.81 Aligned_cols=148 Identities=12% Similarity=0.067 Sum_probs=101.1
Q ss_pred hhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcc----cccCCCHHHHHHHHHHHhhhcC----------cccHHHH
Q 040316 281 FLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIK----SLSDGDYNIKLESLRLLMSMVS----------ESNVAEI 346 (957)
Q Consensus 281 fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~----cL~D~D~sIR~~ALeLL~~Lvn----------e~Nv~~I 346 (957)
.+-++|..-+.-|+..|...+...|..+....+.++. .+.|.+..+-.++|++|..+++ +.-+..+
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3446677777888888888888888777777777655 2348889999999999988743 1114566
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCcchHHHH-
Q 040316 347 SRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKDVRPALV- 425 (957)
Q Consensus 347 V~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ir~~av- 425 (957)
+.-|+.=+.++...+|..+-..+-.+|.. | ...-.++.+++-+...+.....++...+..++.++--....++
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v--~----~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~ 207 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDV--V----GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS 207 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHH--H----CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHH--C----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 77777777777778877666555445442 3 1233666677767777777888888888888877643333345
Q ss_pred --HHHHHHhcC
Q 040316 426 --HVCRNLLID 434 (957)
Q Consensus 426 --~~l~~lL~d 434 (957)
..++.++.|
T Consensus 208 ~~~~ia~ll~D 218 (266)
T 2of3_A 208 VEKTVAPFVGD 218 (266)
T ss_dssp HHHHHGGGGGC
T ss_pred chHHHHHHHcC
Confidence 566666655
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.16 E-value=9.4 Score=48.34 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhcCC--CHHHH---HHHHHhhccCCchh----hHhhhHHHHHHhhhh-----h--hHH---------
Q 040316 105 PVILLITNQLRKDLNSS--NQFEV---SLALECLSRIGNVD----LARDLTPEVFTLLSS-----N--AVR--------- 159 (957)
Q Consensus 105 dlllLatNtLkKDL~s~--Np~vr---~LALr~Ls~I~tpe----La~~L~~~V~klL~~-----~--AvR--------- 159 (957)
++.-.+.+.+++-+.++ +-..+ ..|+.+++.-..++ ....+.+.+..++.+ + .+|
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 55555667777666653 33333 45666666545544 345566666666653 2 122
Q ss_pred -------------HHHHHHHhhhcCCChhHHHHHHHHHHHhhhcC
Q 040316 160 -------------VCFKRLVENLESSEPVILSAVVGVFCELCLKD 191 (957)
Q Consensus 160 -------------~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~n 191 (957)
..+..|.+.|.+++++|..+|+.+|..||.+-
T Consensus 527 y~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 527 YPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 11234556677889999999999999888753
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.13 E-value=2.3 Score=44.81 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhhC------hH-HHhhhhHhhcccccCCCHHHHHHHHHHHhhh
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPKH------LW-AVLENKDFVIKSLSDGDYNIKLESLRLLMSM 337 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~------p~-~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~L 337 (957)
++..|...+.++.|.++--++..|..++..+ +. .+......+..+|+|+|..||..|.+++..|
T Consensus 140 ~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 140 SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3455556667778888888888888777643 11 2233444555677888888888888876443
No 91
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=92.03 E-value=2 Score=51.54 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=78.5
Q ss_pred hhHhhcccccCCCHHHHHHHHHHHhhhcCcc---cHHHHH------HHHHHHhhhcChHHHHHHHHHHHHHHhhhhcc--
Q 040316 311 NKDFVIKSLSDGDYNIKLESLRLLMSMVSES---NVAEIS------RVLINYALKSDPEFCNQILGSILSTCCRNLYE-- 379 (957)
Q Consensus 311 h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~---Nv~~IV------~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~-- 379 (957)
.+..++.+|+..|.++|.-++.+|..++... +.+.|+ ..|+..+.+....+|.+.+.-|..++..+ .+
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n-~~iQ 201 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN-GAIQ 201 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC-HHHH
Confidence 4566788889999999999999999887432 444444 56777787777888999888888777543 21
Q ss_pred cccchHHHHHHHHHhhccCCc----chHHHHHHHHHHHHHhcCcchH
Q 040316 380 VIVDFDWYASLLGEMVRIPHC----QKGEEIEHQIIDIAMRVKDVRP 422 (957)
Q Consensus 380 ~~~dfeWyvdvLl~Ll~~~~~----~v~~eI~~~L~dIi~rvp~ir~ 422 (957)
...-|+=-++.|++++...|. .+.+++...+.++++.++..+.
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~ 248 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN 248 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHH
Confidence 112244457788888876554 5677778888888887765443
No 92
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=91.11 E-value=3.4 Score=43.32 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=46.7
Q ss_pred HHHHHhhhcCCCh--hHHHHHHHHHHHhhhcCCCCc-----cCchHHHHHHHhhcCChHHHHHHHHHHHhhccCCh
Q 040316 162 FKRLVENLESSEP--VILSAVVGVFCELCLKDPRSY-----LPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEP 230 (957)
Q Consensus 162 ~~kL~elL~D~D~--sVv~AAv~vL~EI~~~np~~~-----l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep 230 (957)
++.++++|...|+ .|...|...+..++..++..- ..-+|.|+++|.. .++-.|-.....|+.++-.++
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCH
Confidence 5778899988887 888888888888887665421 2346777777754 566666666666666655433
No 93
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.40 E-value=57 Score=41.28 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHhhhcC--CChhHHHHHHHHHHHhhhcCCC-CccCchHHHHHHHhhc------CChHHHHH--HHHHHHh
Q 040316 156 NAVRVCFKRLVENLES--SEPVILSAVVGVFCELCLKDPR-SYLPLAPEFYKILVDS------KNNWLLIK--VLKIFAK 224 (957)
Q Consensus 156 ~AvR~~~~kL~elL~D--~D~sVv~AAv~vL~EI~~~np~-~~l~Lap~L~~iL~~~------~npWlqIk--ILkLL~~ 224 (957)
+.+..+++++.+.+.. .+-...-|++-++-.|+..-.. .-.+++|.++..|.+. .++...++ ++-++++
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 3444566777776664 5788899999999888753211 1223445555444432 24777665 4578888
Q ss_pred hccC---ChHHHhHHHHHHHHHhhcCCcchHHHHHHHHHHhhcCCc-HH-----------HHHHHHHHHHHhhcCCCchH
Q 040316 225 LATL---EPRLAKRVVEPICEFMRRTEAKSLLFECIRTVLSSLSEY-ES-----------AVKLAVVKVREFLVDDDPNL 289 (957)
Q Consensus 225 l~p~---ep~L~~kLl~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~-~~-----------li~l~v~~L~~fL~ssDpNl 289 (957)
|+.. .|..-..+++.+..-|.. ..+.|.-.|+.++....... .. .+...++.+...+..-++.-
T Consensus 527 y~~wl~~~~~~L~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~ 605 (1023)
T 4hat_C 527 YPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQ 605 (1023)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHH
Confidence 7763 444433344444443422 22345555555544321110 00 12333333444434445666
Q ss_pred HHHHHHHHHHHhhhCh
Q 040316 290 KYLGLQALSIIAPKHL 305 (957)
Q Consensus 290 rYvaL~~L~~Iv~~~p 305 (957)
+.....++..++..-|
T Consensus 606 ~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 606 VHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 6677777777766544
No 94
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=88.12 E-value=40 Score=42.92 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=26.3
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc
Q 040316 163 KRLVENLESSEPVILSAVVGVFCELCLKDPRSY 195 (957)
Q Consensus 163 ~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~ 195 (957)
.+|.+.+.+.+++|..+|+.+|..||.+-...+
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~l 601 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQKCRRHF 601 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666789999999999999999988765543
No 95
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=88.03 E-value=61 Score=41.61 Aligned_cols=183 Identities=13% Similarity=0.180 Sum_probs=96.9
Q ss_pred CChhHHHHHHHHHHHhhhcC-CCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhcc-----C--Ch-H---HH------
Q 040316 172 SEPVILSAVVGVFCELCLKD-PRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLAT-----L--EP-R---LA------ 233 (957)
Q Consensus 172 ~D~sVv~AAv~vL~EI~~~n-p~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p-----~--ep-~---L~------ 233 (957)
..+.|...+..++.+|+... |..|..+++.++..+.. ++-..-..+.+|..++- . .. + +.
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~ 185 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN 185 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence 45667777777888887764 67788888888888764 33222223333333321 1 11 1 00
Q ss_pred -hHHHHHHHHHhhcC------------------CcchHHHHHHHHHHh---hcCCcHHHHH---HHHHHHHHhhcCCCch
Q 040316 234 -KRVVEPICEFMRRT------------------EAKSLLFECIRTVLS---SLSEYESAVK---LAVVKVREFLVDDDPN 288 (957)
Q Consensus 234 -~kLl~~L~~lL~~t------------------~a~SVLyE~I~~Ii~---~l~~~~~li~---l~v~~L~~fL~ssDpN 288 (957)
..++..+..+++.. .+..++-.+.+++.. |.+. .-+.. ..+..+..++. ++.
T Consensus 186 ~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~ 262 (1204)
T 3a6p_A 186 MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQE 262 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHH
Confidence 12333333444321 112344444444433 3221 11111 13333434443 688
Q ss_pred HHHHHHHHHHHHhhhC--hHH----Hhhh----hHhhcccc--------cCCCHHHHHHHHHHHhhhc------------
Q 040316 289 LKYLGLQALSIIAPKH--LWA----VLEN----KDFVIKSL--------SDGDYNIKLESLRLLMSMV------------ 338 (957)
Q Consensus 289 lrYvaL~~L~~Iv~~~--p~~----v~~h----~~~Il~cL--------~D~D~sIR~~ALeLL~~Lv------------ 338 (957)
+|-.|+.+|..|+..+ |.- +.-. ...++..+ +|.|..+.++--+++..++
T Consensus 263 lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~ 342 (1204)
T 3a6p_A 263 LQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSD 342 (1204)
T ss_dssp THHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999865 322 1111 11233322 4445666666666776665
Q ss_pred --CcccHHHHHHHHHHHhhhcCh
Q 040316 339 --SESNVAEISRVLINYALKSDP 359 (957)
Q Consensus 339 --ne~Nv~~IV~ELl~yl~~sD~ 359 (957)
...++..++.-++.+....+.
T Consensus 343 ~~~~~~l~~~l~~lL~~t~~~~~ 365 (1204)
T 3a6p_A 343 VETPSNFGKYLESFLAFTTHPSQ 365 (1204)
T ss_dssp CCCCTTHHHHHHHHHHHHTSSCH
T ss_pred ccChhHHHHHHHHHHHHHhCccH
Confidence 556778888888888766543
No 96
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=85.88 E-value=54 Score=39.35 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=75.1
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhh-------hHhhcccccCCCHHHHHHHHHHHhhhcCcc-cHHH
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLEN-------KDFVIKSLSDGDYNIKLESLRLLMSMVSES-NVAE 345 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h-------~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~-Nv~~ 345 (957)
.+..|..+|.+.|..+||-+++.|..|+..+|.-++++ ...++..|+|+..-||-.++-+|..++..+ +++.
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQk 202 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQK 202 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45567788899999999999999999999998755553 456888999998999999999999998654 4555
Q ss_pred HH------HHHHHHhhhcCh----HHHHHHHHHHHHHHhh
Q 040316 346 IS------RVLINYALKSDP----EFCNQILGSILSTCCR 375 (957)
Q Consensus 346 IV------~ELl~yl~~sD~----~~r~elI~aI~~ic~~ 375 (957)
|| +.|..-+..... ....++..-|..+...
T Consensus 203 lVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 203 IVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 54 344444444322 4556666666666543
No 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=85.80 E-value=82 Score=39.47 Aligned_cols=89 Identities=15% Similarity=0.270 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCC-cH----HHHHHHHHHHHHhhc---CCCchHHHHHHHHHHHHhhhChHHHhh--------hhHhh
Q 040316 252 LLFECIRTVLSSLSE-YE----SAVKLAVVKVREFLV---DDDPNLKYLGLQALSIIAPKHLWAVLE--------NKDFV 315 (957)
Q Consensus 252 VLyE~I~~Ii~~l~~-~~----~li~l~v~~L~~fL~---ssDpNlrYvaL~~L~~Iv~~~p~~v~~--------h~~~I 315 (957)
-++.++..++..+.. .. .++..+....-.++. +.+|+++--.+..+..++..+|..+.. -...+
T Consensus 775 ~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~ 854 (1049)
T 3m1i_C 775 EVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854 (1049)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHH
Confidence 366777777764432 12 233444444444553 467999988888899999888765532 22345
Q ss_pred cccccCCCHHHHHHHHHHHhhhcCc
Q 040316 316 IKSLSDGDYNIKLESLRLLMSMVSE 340 (957)
Q Consensus 316 l~cL~D~D~sIR~~ALeLL~~Lvne 340 (957)
+.++..+++.+.+.++..+..+.+.
T Consensus 855 ~~al~~~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 855 CWAFKHNNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHH
Confidence 5578889999999999998876653
No 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.17 E-value=6.5 Score=49.48 Aligned_cols=240 Identities=14% Similarity=0.203 Sum_probs=134.6
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhh
Q 040316 110 ITNQLRKDLNSSNQ-FEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVENLESSEPVILSAVVGVFCELC 188 (957)
Q Consensus 110 atNtLkKDL~s~Np-~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~ 188 (957)
+...++|-+.+.+. .-.++++..||.-.. ....+.|.++. +++.+.+.+.|++..|..||-.++..+.
T Consensus 55 ~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~--~~~~~e~~~~~---------~~~~~~~~~~dk~~~v~~aa~~~~~~~~ 123 (986)
T 2iw3_A 55 FFGELAKGIKDKKTAANAMQAVAHIANQSN--LSPSVEPYIVQ---------LVPAICTNAGNKDKEIQSVASETLISIV 123 (986)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHTCTTT--CCTTTHHHHHT---------THHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCCcccchHH---------HHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44566666666533 223345555553221 11122333332 3455778888999999999988888887
Q ss_pred hcC-CCCccCchHHHHHHHhhcCChH-HHHHHHHHHHhhccCChHHH----hHHHHHHHHHhhcCCc--chHHHHHHHHH
Q 040316 189 LKD-PRSYLPLAPEFYKILVDSKNNW-LLIKVLKIFAKLATLEPRLA----KRVVEPICEFMRRTEA--KSLLFECIRTV 260 (957)
Q Consensus 189 ~~n-p~~~l~Lap~L~~iL~~~~npW-lqIkILkLL~~l~p~ep~L~----~kLl~~L~~lL~~t~a--~SVLyE~I~~I 260 (957)
..- |.....+.|.++..|.+ ..-| ..+-.|+++..+...-|... ..+++.+++.|.-+.. ..-.++|..-+
T Consensus 124 ~~~~~~a~~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 124 NAVNPVAIKALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp HHSCGGGHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 653 43445567889988854 5579 46777888888775445432 3456666766643321 12334444444
Q ss_pred HhhcCCcH--HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh------ChHHHhhhhHhhcccccCCCHHHHHHHHH
Q 040316 261 LSSLSEYE--SAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK------HLWAVLENKDFVIKSLSDGDYNIKLESLR 332 (957)
Q Consensus 261 i~~l~~~~--~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~------~p~~v~~h~~~Il~cL~D~D~sIR~~ALe 332 (957)
+..+.+.+ ..+...++.+ .+.+ + +=.++..|..+ +.-.+.--...+...|+++...+++++.-
T Consensus 203 ~~~~~n~d~~~~~~~~~~~~----~~p~-~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~ 273 (986)
T 2iw3_A 203 TETVDNKDIERFIPSLIQCI----ADPT-E----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV 273 (986)
T ss_dssp GGGCCCTTTGGGHHHHHHHH----HCTT-H----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HhcCCCcchhhhHHHHHHHh----cChh-h----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEE
Confidence 44444321 1122222222 2221 1 22334444332 12223334455667889999999999877
Q ss_pred HHhhhc----CcccHHHHHHHHHHHhhh-----cChHHHHHHHHHHH
Q 040316 333 LLMSMV----SESNVAEISRVLINYALK-----SDPEFCNQILGSIL 370 (957)
Q Consensus 333 LL~~Lv----ne~Nv~~IV~ELl~yl~~-----sD~~~r~elI~aI~ 370 (957)
++-+|| |+.-+...+..|+--+.+ +||+.|.-+-+++-
T Consensus 274 ~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 274 IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALK 320 (986)
T ss_dssp HHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred EEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHH
Confidence 776665 445566666666665554 57887776655543
No 99
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=80.29 E-value=11 Score=39.58 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCc--hHHHHHHHHHHHHhhhChH---HHhh--hhHhhcccccCCCHHHHHHHHHHHhhhcC--cccHHH
Q 040316 275 VVKVREFLVDDDP--NLKYLGLQALSIIAPKHLW---AVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMVS--ESNVAE 345 (957)
Q Consensus 275 v~~L~~fL~ssDp--NlrYvaL~~L~~Iv~~~p~---~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~ 345 (957)
+..|..+|.++++ .++..+...+..++..++. .+.. -+..++.+|+.++..++..|...|..|+. ++|-..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556677777777 7777787888777765532 2222 35667778888888999999999988874 567666
Q ss_pred HH-----HHHHHHhhh-cChHHHHHHHHHHHHHHh
Q 040316 346 IS-----RVLINYALK-SDPEFCNQILGSILSTCC 374 (957)
Q Consensus 346 IV-----~ELl~yl~~-sD~~~r~elI~aI~~ic~ 374 (957)
|+ ..|.+.+.. .+.+.++.++.++..++.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 54 567777764 577888888777766653
No 100
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=78.83 E-value=4.7 Score=38.94 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHH
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAV 308 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v 308 (957)
.+.+..+|.+-.|-. .+...+.|+..|++-|.+++|+.++.||..|-.+++....-|
T Consensus 21 ~dw~~ileicD~I~~----~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f 77 (140)
T 3ldz_A 21 EDWGLILDICDKVGQ----SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIF 77 (140)
T ss_dssp CCHHHHHHHHHHHTT----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHHHHHC----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 445667776554322 223456688888888889999999999999999988764443
No 101
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=78.48 E-value=1.4e+02 Score=37.84 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhh-cChHHHHHH
Q 040316 287 PNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALK-SDPEFCNQI 365 (957)
Q Consensus 287 pNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~-sD~~~r~el 365 (957)
.-+|-.|+.+|.++...+|..+++-.-.|+.=- ..+..||..|+.+|+. ++++ ..++..+..++.. .+..++.-+
T Consensus 492 ~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~-~e~~EvRiaA~~~Lm~-t~P~--~~~l~~ia~~l~~E~~~QV~sfv 567 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNV-AIKSELRIRSCIVFFE-SKPS--VALVSMVAVRLRREPNLQVASFV 567 (1056)
T ss_dssp HHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHH-TCCC--HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCC-CCChHHHHHHHHHHHH-HCcC--HHHHHHHHHHHhhCchHHHHHHH
Confidence 346677888888888888887777655555333 3458999999999975 3444 4566666666665 455666666
Q ss_pred HHHHHHHHh
Q 040316 366 LGSILSTCC 374 (957)
Q Consensus 366 I~aI~~ic~ 374 (957)
...|-.++.
T Consensus 568 ~S~l~sla~ 576 (1056)
T 1lsh_A 568 YSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 666655543
No 102
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=77.46 E-value=99 Score=34.78 Aligned_cols=128 Identities=14% Similarity=0.157 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCc---chhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHHHHHHHHHhcCCCHHHH
Q 040316 50 PTKSAALRKLSYLSSLHGADM---SFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLITNQLRKDLNSSNQFEV 126 (957)
Q Consensus 50 ~~K~~AL~KLIYL~ML~G~Dm---S~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLatNtLkKDL~s~Np~vr 126 (957)
..|...++++-=|. + ..|- ...+.+++++...++...||-|-=++...+..+.+++.-++.+|..=|.+.++.+.
T Consensus 40 ~~Kl~~L~q~~EL~-l-~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 40 DSKITVLKQVQELI-I-NKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp THHHHHHHHHHHHH-H-TTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHH-h-ccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 47888777766542 2 3343 45688888999999999999888888877888888888888888888888888887
Q ss_pred HHHHHhhccCCchhhHhhhHHHHHHhhhhh-----hHHHHH-------HHHHhhhcCCChhHHHHHHHHHHHhh
Q 040316 127 SLALECLSRIGNVDLARDLTPEVFTLLSSN-----AVRVCF-------KRLVENLESSEPVILSAVVGVFCELC 188 (957)
Q Consensus 127 ~LALr~Ls~I~tpeLa~~L~~~V~klL~~~-----AvR~~~-------~kL~elL~D~D~sVv~AAv~vL~EI~ 188 (957)
=-|+.+.++ ++|-+++.+..+ .+..+| ..+..++...+.+|-.+|+..+..+.
T Consensus 118 K~~I~~~ts---------lYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 118 KKAILTMTQ---------LYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 777777766 345555544431 123333 34556677889999999998887765
No 103
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=74.82 E-value=8.2 Score=37.68 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=57.5
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh------hhHhhcccccC
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE------NKDFVIKSLSD 321 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~Il~cL~D 321 (957)
.+.+...+.+-.|=.. +...+.|+..|++-|.+.+|++++.||..|-.+++.....|.. +.+.+...+.+
T Consensus 17 ~dw~~~leicD~I~~~----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~ 92 (148)
T 1mhq_A 17 QDWSAIQNFCEQVNTD----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHS----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHcC----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHcc
Confidence 4556667766654331 2345667888888888999999999999999999876433322 33334444432
Q ss_pred ------CCHHHHHHHHHHHhhh
Q 040316 322 ------GDYNIKLESLRLLMSM 337 (957)
Q Consensus 322 ------~D~sIR~~ALeLL~~L 337 (957)
.+..||.+.|+++..-
T Consensus 93 k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 93 KYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp STTSCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHH
Confidence 4678888888887654
No 104
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=73.84 E-value=2e+02 Score=36.58 Aligned_cols=52 Identities=13% Similarity=0.342 Sum_probs=37.6
Q ss_pred HHhhhhccCCCCCCCHHH----HHHHHhcccccCCCHHHHHHHHHHHHHHHHHhhhh
Q 040316 449 AAAWVSGEYVEFSRNPFE----LMEALLQPRTNLLLPSIRAVYVQSVFKVLIFCAHS 501 (957)
Q Consensus 449 a~aWIlGEY~~~i~~p~~----iL~~LL~~~~~~es~~Vq~~iLtAl~Klf~~~~~~ 501 (957)
.+.|++|.|+..+..-++ ++..++. .+....+.||.+...|+.|+.-.|-..
T Consensus 545 ~i~~vlgrY~~wl~~h~~~L~~vl~~L~~-~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 545 NIMYIVGQYPRFLRAHWKFLKTVVNKLFE-FMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHH-HTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhhhHHHHHhCHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999988764333 4444554 345557899999999999998887543
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=73.01 E-value=32 Score=41.31 Aligned_cols=69 Identities=20% Similarity=0.150 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhh-hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhc
Q 040316 112 NQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSS-NAVRVCFKRLVENLESSEPVILSAVVGVFCELCLK 190 (957)
Q Consensus 112 NtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~-~AvR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~ 190 (957)
..++ .|+|+++-.|..|+.+|++|+.- +.-.+++-+ ..|+ +-|..+|.|++..|..+|..+|-.|+..
T Consensus 38 Pll~-~L~S~~~~~r~~A~~al~~l~~~-------~~~~~l~~~~~~v~---~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 38 PVLK-DLKSPDAKSRTTAAGAIANIVQD-------AKCRKLLLREQVVH---IVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHH-HHSSSCCSHHHHHHHHHHHHTTS-------HHHHHHHHHTTHHH---HHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCCCHHHHHHHHHHHHHHHcC-------cHHHHHHHHcCCHH---HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3444 49999999999999999998742 222222222 2222 2355689999999999999999888865
Q ss_pred C
Q 040316 191 D 191 (957)
Q Consensus 191 n 191 (957)
.
T Consensus 107 ~ 107 (684)
T 4gmo_A 107 E 107 (684)
T ss_dssp S
T ss_pred c
Confidence 4
No 106
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=72.53 E-value=1e+02 Score=32.63 Aligned_cols=144 Identities=9% Similarity=0.052 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHHH
Q 040316 34 SKAIEEIRREIKSTDLPTKSAALRKLSYLSSLHGADMS---FAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILLI 110 (957)
Q Consensus 34 ~~elaEIR~eL~S~d~~~K~~AL~KLIYL~ML~G~DmS---~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllLa 110 (957)
...+.++-++.+......|...++++-=+.| ++ |-+ ..+..++.+...++...||-+-=++...+..+++++.-+
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~-~~-dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~ 91 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVL-GS-CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHV 91 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TT-TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH-cc-CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666444789999999887655 34 433 234445556668889999988777777778889999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhh-----hHHHHH-------HHHHhhhcCCChhHHH
Q 040316 111 TNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSN-----AVRVCF-------KRLVENLESSEPVILS 178 (957)
Q Consensus 111 tNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~-----AvR~~~-------~kL~elL~D~D~sVv~ 178 (957)
+.+|..=|.+.++.+.=-|+.+.++ ++|-+++.+..+ ....+| .++..++...+.||-.
T Consensus 92 l~~L~~Ll~d~d~~V~K~~I~~~~~---------iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl 162 (257)
T 3gs3_A 92 INVVSMLLRDNSAQVIKRVIQACGS---------IYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRT 162 (257)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHH---------HHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH---------HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 9999888888888887777777655 445555544431 122333 3455667788999999
Q ss_pred HHHHHHHHhh
Q 040316 179 AVVGVFCELC 188 (957)
Q Consensus 179 AAv~vL~EI~ 188 (957)
+|+..+..+.
T Consensus 163 ~~iKF~e~vI 172 (257)
T 3gs3_A 163 NAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 107
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=71.94 E-value=9.9 Score=37.20 Aligned_cols=86 Identities=14% Similarity=-0.041 Sum_probs=54.9
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh------hhHhhccccc-
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE------NKDFVIKSLS- 320 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~Il~cL~- 320 (957)
.+.+..+|.+-.|=. .+...+.|+..|++-|.+.+|++.+.+|..|-.+++....-|.. +.+.+...+.
T Consensus 27 ~dw~~ileicD~I~~----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~ 102 (149)
T 3g2s_A 27 LDWASINGFCEQLNE----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSP 102 (149)
T ss_dssp CCHHHHHHHHHHGGG----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHC----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcc
Confidence 445666665554322 12334567788888888999999999999999999876443322 2233333333
Q ss_pred -----CCCHHHHHHHHHHHhhh
Q 040316 321 -----DGDYNIKLESLRLLMSM 337 (957)
Q Consensus 321 -----D~D~sIR~~ALeLL~~L 337 (957)
.++..+|.+.|+++..-
T Consensus 103 k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 103 KYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp TTTGGGSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHH
Confidence 24567777777777544
No 108
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=71.59 E-value=31 Score=38.16 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHhhh---------ChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcc--c
Q 040316 274 AVVKVREFLVDDDPNLKYLGLQALSIIAPK---------HLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES--N 342 (957)
Q Consensus 274 ~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~---------~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~--N 342 (957)
.+..|...+...+.|..--+|.+|..|+.. +|.++ ..++..++..+..|-+.||+||..+|.-+ |
T Consensus 161 GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI----~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~ 236 (339)
T 3dad_A 161 GLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTI----QWLYTLCASLSRLVVKTALKLLLVFVEYSENN 236 (339)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHH----HHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred cHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHH----HHHHHHHcCccHHHHHHHHHHHHHHHccCccc
Confidence 556677777788999999999999998763 34443 34455555788999999999999998655 8
Q ss_pred HHHHHHHHH
Q 040316 343 VAEISRVLI 351 (957)
Q Consensus 343 v~~IV~ELl 351 (957)
...+.++.-
T Consensus 237 ~~lv~~av~ 245 (339)
T 3dad_A 237 APLFIRAVN 245 (339)
T ss_dssp HHHHHHHHH
T ss_pred chHHHHHHH
Confidence 776665444
No 109
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.53 E-value=6.3 Score=39.09 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHH
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAV 308 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v 308 (957)
.+.+...|.+-.|=. -+ ...+.|+..|++-|.+.+|++++.||..|-.+++.....|
T Consensus 31 ~Dw~~~leicD~I~~-~~---~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 31 EDWSLIMDICDKVGS-TP---NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp CCHHHHHHHHHHHHH-SS---SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHHHhC-CC---ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 455667776655433 12 2345677888888888999999999999999998764433
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=69.73 E-value=75 Score=33.48 Aligned_cols=72 Identities=7% Similarity=-0.046 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhcCc
Q 040316 346 ISRVLINYALKSDPEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHCQKGEEIEHQIIDIAMRVKD 419 (957)
Q Consensus 346 IV~ELl~yl~~sD~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~~v~~eI~~~L~dIi~rvp~ 419 (957)
.+..+...+.+.+..+|+-++....--|.+ +.+..+.+-.+.+|-.+......|+...|+..|+|+...+|+
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 344455555555555555555443322322 222334444555555555555556677777777777766664
No 111
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=68.83 E-value=1.1e+02 Score=32.44 Aligned_cols=98 Identities=8% Similarity=0.045 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHH-hhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcC--cccHHHHH
Q 040316 271 VKLAVVKVREFLVDDDPNLKYLGLQALSII-APKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVS--ESNVAEIS 347 (957)
Q Consensus 271 i~l~v~~L~~fL~ssDpNlrYvaL~~L~~I-v~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvn--e~Nv~~IV 347 (957)
...++.-|..--..++ ..|.-.|.-...+ ...+|.++.+..+.|+..-.|++..+|+.-.+.+...|. .+-+..++
T Consensus 14 ~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l 92 (257)
T 3gs3_A 14 RAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVI 92 (257)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333445 5888888888874 456899999999999998889999999999999877664 45577788
Q ss_pred HHHHHHhhhcChHHHHHHHHHH
Q 040316 348 RVLINYALKSDPEFCNQILGSI 369 (957)
Q Consensus 348 ~ELl~yl~~sD~~~r~elI~aI 369 (957)
..|..++.+.|+...+.+|.+.
T Consensus 93 ~~L~~Ll~d~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 93 NVVSMLLRDNSAQVIKRVIQAC 114 (257)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 8888888877777666666544
No 112
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=68.78 E-value=11 Score=37.75 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=55.8
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhh------hhHhhccccc-
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLE------NKDFVIKSLS- 320 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~Il~cL~- 320 (957)
.+.+...|.+-.|=.. + ...+.|+..|++-|.+.++++++.+|..|-.+++.....|.. +.+.+..++.
T Consensus 29 ~Dw~~ileicD~I~~~-~---~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~ 104 (171)
T 1juq_A 29 EDWEYIIGFCDQINKE-L---EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSP 104 (171)
T ss_dssp CCHHHHHHHHHHHHHS-T---THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHcC-C---ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhcc
Confidence 4556777766654331 2 234667888888888999999999999999999876443332 2233333332
Q ss_pred -----CCCHHHHHHHHHHHhhh
Q 040316 321 -----DGDYNIKLESLRLLMSM 337 (957)
Q Consensus 321 -----D~D~sIR~~ALeLL~~L 337 (957)
..+..||.++|+++..-
T Consensus 105 k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 105 KYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHH
Confidence 23567777777776543
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=62.13 E-value=1.5e+02 Score=33.41 Aligned_cols=82 Identities=9% Similarity=0.010 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHH-hhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHhhhcChHHHHH
Q 040316 288 NLKYLGLQALSII-APKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMV--SESNVAEISRVLINYALKSDPEFCNQ 364 (957)
Q Consensus 288 NlrYvaL~~L~~I-v~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lv--ne~Nv~~IV~ELl~yl~~sD~~~r~e 364 (957)
..|.-.|.-+..| ...+|.++.++++.|+..-.|++..||+-..+.|...| ..+.+..++.-|..++.+.|+...+.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~ 119 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKK 119 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4688888888886 45889999999999999999999999999999988665 45678888888888888778777666
Q ss_pred HHHHH
Q 040316 365 ILGSI 369 (957)
Q Consensus 365 lI~aI 369 (957)
+|.+.
T Consensus 120 ~I~~~ 124 (386)
T 3o2t_A 120 AILTM 124 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=61.76 E-value=9 Score=40.41 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=42.9
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhc
Q 040316 278 VREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKS 357 (957)
Q Consensus 278 L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~s 357 (957)
|..++.+.++.+|+.+...+ . ...+...++|+|..||..+..-+- . .++..+.+.
T Consensus 175 l~~ll~D~d~~VR~aaa~~l---~----------~~~L~~Ll~D~d~~VR~~aa~~l~-----------~-~~L~~L~D~ 229 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL---R----------GDDLLELLHDPDWTVRLAAVEHAS-----------L-EALRELDEP 229 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC---C----------GGGGGGGGGCSSHHHHHHHHHHSC-----------H-HHHHHCCCC
T ss_pred HHHHHcCCCHHHHHHHHHhC---C----------HHHHHHHHcCCCHHHHHHHHHcCC-----------H-HHHHHccCC
Confidence 44566788888888887763 1 135666788888888888777642 1 344445555
Q ss_pred ChHHHHHHHHHH
Q 040316 358 DPEFCNQILGSI 369 (957)
Q Consensus 358 D~~~r~elI~aI 369 (957)
+..+|..+..++
T Consensus 230 ~~~VR~aa~~~L 241 (244)
T 1lrv_A 230 DPEVRLAIAGRL 241 (244)
T ss_dssp CHHHHHHHHCCC
T ss_pred CHHHHHHHHHHh
Confidence 666666655443
No 115
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=55.31 E-value=2.8e+02 Score=31.81 Aligned_cols=191 Identities=14% Similarity=0.176 Sum_probs=100.1
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC--c--cCchHHHHHHHhhcCChHHHHHHHHHHHhhc-----cCChH
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLKDPRS--Y--LPLAPEFYKILVDSKNNWLLIKVLKIFAKLA-----TLEPR 231 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~--~--l~Lap~L~~iL~~~~npWlqIkILkLL~~l~-----p~ep~ 231 (957)
.+.+|.+++...||.-.-..-.++..|-.+-... | ..+...|++.+......-+...+|++|+.+. |..++
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 4456777777888877766666666665543221 1 1112223444434444455667777776654 33443
Q ss_pred HHhHHHHHHHHHhhcCCcch----HHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhh-hChH
Q 040316 232 LAKRVVEPICEFMRRTEAKS----LLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAP-KHLW 306 (957)
Q Consensus 232 L~~kLl~~L~~lL~~t~a~S----VLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~-~~p~ 306 (957)
-..-+...|.++... ...+ -+-.|+..++. ..+.+...++..|.++==-+++.-.-+-|.-+..|+. ..|.
T Consensus 243 hk~fl~~vLlPLhk~-~~l~~y~~qL~ycv~qf~e---KDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ 318 (449)
T 2npp_B 243 HKIFLLKVLLPLHKV-KSLSVYHPQLAYCVVQFLE---KDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPS 318 (449)
T ss_dssp HHHHHHHTTGGGGGS-SCGGGTHHHHHHHHHHHHH---HCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcc-chhHHhHHHHHHHHHHHHh---cCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHH
Confidence 222233444444432 2222 23345544443 3345555455555444322334444455556666654 3344
Q ss_pred HHh----hhhHhhcccccCCCHHHHHHHHHHHh-----hhcCcccHHHHHHHHHHHhhh
Q 040316 307 AVL----ENKDFVIKSLSDGDYNIKLESLRLLM-----SMVSESNVAEISRVLINYALK 356 (957)
Q Consensus 307 ~v~----~h~~~Il~cL~D~D~sIR~~ALeLL~-----~Lvne~Nv~~IV~ELl~yl~~ 356 (957)
-|+ +-...+-.|++.+...|..+||.+.- .++ .+|...|+.-+..-+..
T Consensus 319 ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li-~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 319 EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI-SDNAAKILPIMFPSLYR 376 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-HTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH-HhchhhhHHhhHHHHHH
Confidence 343 34455567999998999999987652 222 34666666666665543
No 116
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=54.70 E-value=1.2e+02 Score=38.30 Aligned_cols=150 Identities=12% Similarity=0.041 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHHhhhCh-----HHHhhhhHhhcccccCCC-HHHHHHHHHHHhhh--c
Q 040316 268 ESAVKLAVVKVREFLV-DDDPNLKYLGLQALSIIAPKHL-----WAVLENKDFVIKSLSDGD-YNIKLESLRLLMSM--V 338 (957)
Q Consensus 268 ~~li~l~v~~L~~fL~-ssDpNlrYvaL~~L~~Iv~~~p-----~~v~~h~~~Il~cL~D~D-~sIR~~ALeLL~~L--v 338 (957)
++.+..+++.|..... ++.- .|..+|..+..+.-.|- .-...-...++.+|.|+. ..||..|-..|.+| |
T Consensus 796 ~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 796 KNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp HHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 3444555555555444 3344 89999888877776543 222334567788999999 99999999999999 4
Q ss_pred C-c-ccHHHHHHHHHHHhhh--cC----------hHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhhccCCc--ch
Q 040316 339 S-E-SNVAEISRVLINYALK--SD----------PEFCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMVRIPHC--QK 402 (957)
Q Consensus 339 n-e-~Nv~~IV~ELl~yl~~--sD----------~~~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll~~~~~--~v 402 (957)
. . ..+..++..+.+-+.. .- ..-+.-.|.+++.+.....|.. |-..|.=++|..|....++ .+
T Consensus 875 ~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~v-P~P~w~P~~l~~La~~~~~~~~i 953 (997)
T 1vsy_5 875 WKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVF-PLPPWIPKNLSNLSSWARTSGMT 953 (997)
T ss_dssp CCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCS-SCCTHHHHHHHHHHTTSSSCSSH
T ss_pred CCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCC-CCCcccHHHHHHHHHHhCCCCch
Confidence 4 3 3344555555544322 00 0233345555555554445543 1135888999888866543 24
Q ss_pred HHHHHHHHHHHHHhcCc
Q 040316 403 GEEIEHQIIDIAMRVKD 419 (957)
Q Consensus 403 ~~eI~~~L~dIi~rvp~ 419 (957)
+..+-..+.+.-+-+.+
T Consensus 954 ~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 954 GNAAKNTISEFKKVRAD 970 (997)
T ss_dssp HHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHhccch
Confidence 44444444443333443
No 117
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=54.10 E-value=25 Score=34.50 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=55.9
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHHhhhChHHHhh------hhHh-hcccc
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLV-DDDPNLKYLGLQALSIIAPKHLWAVLE------NKDF-VIKSL 319 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~-ssDpNlrYvaL~~L~~Iv~~~p~~v~~------h~~~-Il~cL 319 (957)
.+.+...|.+-.|=. -+ ...+.|+..|++-|. +.++++++.||..|-.+++.....|.. +.+. ++..+
T Consensus 32 ~Dw~~~leicD~I~~-~~---~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~ 107 (157)
T 1elk_A 32 EDWALNMEICDIINE-TE---EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTI 107 (157)
T ss_dssp CCHHHHHHHHHHHHH-SS---SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHH
T ss_pred cCHHHHHHHHHHHhC-CC---ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHh
Confidence 456777776665432 12 234567788888886 578999999999999999876433332 2233 23333
Q ss_pred ---cCCCHHHHHHHHHHHhhh
Q 040316 320 ---SDGDYNIKLESLRLLMSM 337 (957)
Q Consensus 320 ---~D~D~sIR~~ALeLL~~L 337 (957)
.+++..||.++|+++..-
T Consensus 108 ~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 108 LPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp STTTCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHH
Confidence 245568888888887654
No 118
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=53.10 E-value=2.7e+02 Score=30.78 Aligned_cols=150 Identities=13% Similarity=0.047 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHhcCCCCcchhHHHHHHhhcCCCccchhhhHHHHHhhcCCCchHHHH
Q 040316 31 LFISKAIEEIRREIKSTDL-PTKSAALRKLSYLSSLHGADMSFAAFHAVEVMSSPQFFYKKIGYHAVTQSFNDDTPVILL 109 (957)
Q Consensus 31 ~~I~~elaEIR~eL~S~d~-~~K~~AL~KLIYL~ML~G~DmS~~~f~VVelmsS~~~~~KRlGYLaas~~~~~~~dlllL 109 (957)
+-+.+.+.++|.-|-.... .-..+++..|.- ++. -.| .....+..+..=+|+.||=+....+.+++...+--.-
T Consensus 41 ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~-ei~-~~d---ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p 115 (341)
T 1upk_A 41 EEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQ-ELY-NSG---LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTP 115 (341)
T ss_dssp HHHHHHHHHHHHHHC-------CHHHHHHHHH-HHH-HHS---HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHH-HhC---HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCc
Confidence 3455666777777764432 112222333332 221 111 3445556666666665554444333333322211111
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHH------HHHHHHhhhcCCChhHHHHHHHH
Q 040316 110 ITNQLRKDLNSSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRV------CFKRLVENLESSEPVILSAVVGV 183 (957)
Q Consensus 110 atNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~------~~~kL~elL~D~D~sVv~AAv~v 183 (957)
++.-+. .+|-+.-.-+++ ...+++|-....-++.|+.|+.+.. +|-++.+....++-.|.+-|...
T Consensus 116 ~v~Yl~-----~~peil~~L~~g---Ye~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~T 187 (341)
T 1upk_A 116 TVEYIC-----TQQNILFMLLKG---YESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFAT 187 (341)
T ss_dssp HHHHHH-----TCTHHHHHHHHG---GGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHH
T ss_pred hhHHHH-----cCHHHHHHHHHh---hccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHH
Confidence 111111 122222222222 2355666555555666777765432 23356666777888888889998
Q ss_pred HHHhhhcCCC
Q 040316 184 FCELCLKDPR 193 (957)
Q Consensus 184 L~EI~~~np~ 193 (957)
+-++..++..
T Consensus 188 fkelLt~Hk~ 197 (341)
T 1upk_A 188 FKDLLTRHKL 197 (341)
T ss_dssp HHHHHHSSHH
T ss_pred HHHHHhccHH
Confidence 8888776653
No 119
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.99 E-value=23 Score=36.49 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=38.9
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHH
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAV 308 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v 308 (957)
.+.+..+|..-.|=. -+. ..+.++..|++-|.+.++++++.||..|..+++.-...|
T Consensus 21 ~dw~~~leicd~i~~-~~~---~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f 77 (220)
T 1dvp_A 21 PDWPSILLICDEINQ-KDV---TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPV 77 (220)
T ss_dssp CCHHHHHHHHHHHHT-TSS---CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH
T ss_pred cCHHHHHHHHHhhcC-CCc---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHH
Confidence 455666665554422 122 234566777777788999999999999999998764433
No 120
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=52.81 E-value=51 Score=39.53 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHhhhChH---HHhh-h-h-HhhcccccCCCHHHHHHHHHHHhhhcCcc
Q 040316 277 KVREFLVDDDPNLKYLGLQALSIIAPKHLW---AVLE-N-K-DFVIKSLSDGDYNIKLESLRLLMSMVSES 341 (957)
Q Consensus 277 ~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~---~v~~-h-~-~~Il~cL~D~D~sIR~~ALeLL~~Lvne~ 341 (957)
.|...|.+.|++.|.-|+.+|..|+. ++. ++.. . + ..|..+|.|++..||..|...|-.|+-..
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 34445789999999999999999996 443 2222 2 1 23456799999999999999998887654
No 121
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=50.62 E-value=3.1e+02 Score=34.36 Aligned_cols=92 Identities=10% Similarity=0.063 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHhhccCCchhhHhhhHHHHHHhhhhhhHHHHHHHHHh--hhcCCChhHHHHHH
Q 040316 105 PVILLITNQLRKDLN-SSNQFEVSLALECLSRIGNVDLARDLTPEVFTLLSSNAVRVCFKRLVE--NLESSEPVILSAVV 181 (957)
Q Consensus 105 dlllLatNtLkKDL~-s~Np~vr~LALr~Ls~I~tpeLa~~L~~~V~klL~~~AvR~~~~kL~e--lL~D~D~sVv~AAv 181 (957)
.+.-++++.+.-+.. +++|.+|..++.+++....---.. .+.+..+++-+.. .+.++++.|..+|+
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-----------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~ 558 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-----------SAAIPALIEYFVGPRGIHNTNERVRPRAW 558 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-----------CTTHHHHHHHHTSTTTTTCCCTTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----------chhHHHHHHHHhccccccCCChhHHHHHH
Confidence 455566666554443 578999999999998875521110 0122233344555 66688899999999
Q ss_pred HHHHHhhhcCCCCccCchHHHHHHHh
Q 040316 182 GVFCELCLKDPRSYLPLAPEFYKILV 207 (957)
Q Consensus 182 ~vL~EI~~~np~~~l~Lap~L~~iL~ 207 (957)
.+|..+|+.-.....+.++.++..+.
T Consensus 559 ~af~~f~~~~~~~L~~~~~~il~~l~ 584 (980)
T 3ibv_A 559 YLFYRFVKSIKKQVVNYTESSLAMLG 584 (980)
T ss_dssp HHHHHHHHHTTTTCSSSHHHHHHHTT
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 99999988776644455555555543
No 122
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=45.61 E-value=5.1e+02 Score=31.80 Aligned_cols=186 Identities=12% Similarity=0.136 Sum_probs=100.1
Q ss_pred hcCCChhHHHHHHHHHHHhhhcCC---CCccC-chHHHHHHHhh--cCChHHHHHHHHHHHhhccC---ChHHHhHHHHH
Q 040316 169 LESSEPVILSAVVGVFCELCLKDP---RSYLP-LAPEFYKILVD--SKNNWLLIKVLKIFAKLATL---EPRLAKRVVEP 239 (957)
Q Consensus 169 L~D~D~sVv~AAv~vL~EI~~~np---~~~l~-Lap~L~~iL~~--~~npWlqIkILkLL~~l~p~---ep~L~~kLl~~ 239 (957)
+-.++..|...+..++-.++--+| +...+ +...+|.-|.+ ...+=-.+..|+.|..+++. .+.....+.+.
T Consensus 348 ~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~l 427 (799)
T 1vsy_4 348 SQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNV 427 (799)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHH
T ss_pred hCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 347888888888888888887676 75432 33455666666 66777778888888887752 33333344444
Q ss_pred HHHHhhcC--Cc---chHHHHHHHHHHhhcCCc------H---------HHHHHHHHHHHHh----hcCCCchHHHHHHH
Q 040316 240 ICEFMRRT--EA---KSLLFECIRTVLSSLSEY------E---------SAVKLAVVKVREF----LVDDDPNLKYLGLQ 295 (957)
Q Consensus 240 L~~lL~~t--~a---~SVLyE~I~~Ii~~l~~~------~---------~li~l~v~~L~~f----L~ssDpNlrYvaL~ 295 (957)
+.-.+..= +. .+..+..+..+++.++-. + ..++..+..|..= +..-|.+.- -.
T Consensus 428 L~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~---~~ 504 (799)
T 1vsy_4 428 LSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELL---NN 504 (799)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHH---HH
T ss_pred HHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHH---HH
Confidence 43333210 11 256667777666653311 0 1122222222110 000011111 11
Q ss_pred HHHHHhhhChHHHhhhhHhhccccc-CCCHHH---HHHHHHHHhhhcCcccHHHHHHHHHHHhhhc
Q 040316 296 ALSIIAPKHLWAVLENKDFVIKSLS-DGDYNI---KLESLRLLMSMVSESNVAEISRVLINYALKS 357 (957)
Q Consensus 296 ~L~~Iv~~~p~~v~~h~~~Il~cL~-D~D~sI---R~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~s 357 (957)
.+.......++.+..+.+.++.++. +++..+ =..++..|+.-++++=....++++.+|+.+.
T Consensus 505 ~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n 570 (799)
T 1vsy_4 505 AFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSN 570 (799)
T ss_dssp HHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 2222233456667777777776665 222222 1246677777777777777888887777664
No 123
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=45.47 E-value=3.8e+02 Score=30.27 Aligned_cols=169 Identities=12% Similarity=0.160 Sum_probs=84.6
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC--c--cCchHHHHHHHhhcCChHHHHHHHHHHHhhc-----cCChHH
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRS--Y--LPLAPEFYKILVDSKNNWLLIKVLKIFAKLA-----TLEPRL 232 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~--~--l~Lap~L~~iL~~~~npWlqIkILkLL~~l~-----p~ep~L 232 (957)
..+|.+++...||.-.-..-.++..|-.+-... | ..+...||+.+-.....-+...+|++|+.+. |..++-
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeeh 210 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 210 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHH
Confidence 455667777777776666666666654433210 0 0111223333333333345556777776654 233322
Q ss_pred HhHHHHHHHHHhhcCCcc----hHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh-ChHH
Q 040316 233 AKRVVEPICEFMRRTEAK----SLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPK-HLWA 307 (957)
Q Consensus 233 ~~kLl~~L~~lL~~t~a~----SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~-~p~~ 307 (957)
..-+...|.++... ... .-+-.|+..++. ..+++...++..|.++==.+++.-.-+-|.-+..|+.. .|.-
T Consensus 211 k~fl~~vLlPLHk~-~~~~~y~~qL~ycv~qf~e---KDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~ 286 (403)
T 3fga_B 211 KIFLLKVLLPLHKV-KSLSVYHPQLAYCVVQFLE---KDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE 286 (403)
T ss_dssp HHHHHHTTTGGGGS-TTGGGTHHHHHHHHHHHHH---HCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcC-CcchhhHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHH
Confidence 22233444444332 222 223445444443 33455554555554443223444444455556666543 3444
Q ss_pred Hhh----hhHhhcccccCCCHHHHHHHHHHH
Q 040316 308 VLE----NKDFVIKSLSDGDYNIKLESLRLL 334 (957)
Q Consensus 308 v~~----h~~~Il~cL~D~D~sIR~~ALeLL 334 (957)
|+. -...+-.|++++...|..+||.+.
T Consensus 287 f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 287 FVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 433 344555788999889999998775
No 124
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=45.41 E-value=2.5e+02 Score=31.76 Aligned_cols=107 Identities=14% Similarity=0.250 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhH--hhhHHHHHHhhhhhh----HHHHHHHHHhhhcCCChhHH
Q 040316 104 TPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDLA--RDLTPEVFTLLSSNA----VRVCFKRLVENLESSEPVIL 177 (957)
Q Consensus 104 ~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeLa--~~L~~~V~klL~~~A----vR~~~~kL~elL~D~D~sVv 177 (957)
+.++..++-.+.||-+-..+.++++ |+.=+.-.++.-+ -....+|+..+.... ...+|.++..++.+.+..|.
T Consensus 232 ~qL~ycv~qf~eKDp~L~~~vi~~L-Lk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVA 310 (403)
T 3fga_B 232 PQLAYCVVQFLEKDSTLTEPVVMAL-LKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVA 310 (403)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHH-HHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHH-HHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 5677788888888888777777777 6766666554322 222233333333322 23468889999999999999
Q ss_pred HHHHHHH-----HHhhhcCCCCccCchHHHHHHHh-hcCChHH
Q 040316 178 SAVVGVF-----CELCLKDPRSYLPLAPEFYKILV-DSKNNWL 214 (957)
Q Consensus 178 ~AAv~vL-----~EI~~~np~~~l~Lap~L~~iL~-~~~npWl 214 (957)
-.|+.+. ..+...+.. .+.|.+|--|. ...+-|-
T Consensus 311 ErAL~~wnNe~i~~li~~n~~---~IlPii~p~L~~~~~~HWn 350 (403)
T 3fga_B 311 ERALYYWNNEYIMSLISDNAA---KILPIMFPSLYRNSKTHWN 350 (403)
T ss_dssp HHHHGGGGCHHHHHHHHTTHH---HHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHhccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHccC
Confidence 9988764 444444443 23455554442 3456674
No 125
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.55 E-value=26 Score=36.38 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=39.3
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChH
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLW 306 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~ 306 (957)
.+.+..+|..-.|=. -+.. .+.++..|++-|.+.+||+++.||..|-.+++.-..
T Consensus 24 ~dw~~ileicD~I~~-~~~~---~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~ 78 (226)
T 3zyq_A 24 TDWESILQICDLIRQ-GDTQ---AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ 78 (226)
T ss_dssp CCHHHHHHHHHHHHT-TSSC---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHHhC-CCcc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch
Confidence 455777776665533 1222 355777777778899999999999999999886543
No 126
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=42.99 E-value=67 Score=33.17 Aligned_cols=41 Identities=7% Similarity=0.213 Sum_probs=31.5
Q ss_pred hHhhcccccCCCHHHHHHHHHHHhhhcCcc---c-HHHHHHHHHH
Q 040316 312 KDFVIKSLSDGDYNIKLESLRLLMSMVSES---N-VAEISRVLIN 352 (957)
Q Consensus 312 ~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~---N-v~~IV~ELl~ 352 (957)
...|..||+.+.+.+|..+++||..+|.-. . ...|++-|-.
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~ 142 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE 142 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 366778899999999999999999888643 4 5556555544
No 127
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=40.57 E-value=3.5e+02 Score=28.45 Aligned_cols=139 Identities=10% Similarity=0.009 Sum_probs=83.7
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHH-hhcCCCchHHHHHHHHHHHHhh-hChHHHhhhhHh
Q 040316 237 VEPICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVRE-FLVDDDPNLKYLGLQALSIIAP-KHLWAVLENKDF 314 (957)
Q Consensus 237 l~~L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~-fL~ssDpNlrYvaL~~L~~Iv~-~~p~~v~~h~~~ 314 (957)
+.....+.++ ...+|=+-++..+.+. ... ..+...|+. +..+..=-+||.+-..+..++. .+|+. -...
T Consensus 73 ~~la~~L~~~-~~deVR~~Av~lLg~~-~~~----~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l~~ 143 (240)
T 3l9t_A 73 KKLAFLAYQS-DVYQVRMYAVFLFGYL-SKD----KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---ALPI 143 (240)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHT-TTS----HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---THHH
T ss_pred HHHHHHHHhC-cchHHHHHHHHHHHhc-cCc----HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HHHH
Confidence 3334444444 5567777777765553 321 234555555 4344555699999999999886 78863 2345
Q ss_pred hcccccCCCHHHHHHHHHHHhh----hcCcccHHHHHHHHHHHhhhcChHHHHHHHH-HHHHHHhhhhcccccchHHHHH
Q 040316 315 VIKSLSDGDYNIKLESLRLLMS----MVSESNVAEISRVLINYALKSDPEFCNQILG-SILSTCCRNLYEVIVDFDWYAS 389 (957)
Q Consensus 315 Il~cL~D~D~sIR~~ALeLL~~----Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~-aI~~ic~~~~y~~~~dfeWyvd 389 (957)
+..-..|+|.-+|+.|++-+.. ..-+.|-..++.-|-.. ...+..|.++.|. .+-.+ ++ .+.+|..+
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L-~~D~s~yVrKSVan~LrD~-SK------~~Pd~V~~ 215 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADL-KEDVSEYVRKSVGNALRDI-SK------KFPDLVKI 215 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTT-TTCSCHHHHHHHHHHHHHH-HT------TCHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHh-cCChHHHHHHHHHHHHHHH-hh------hCHHHHHH
Confidence 6667889999999999998744 22235555555544444 4444566666664 44443 33 24567776
Q ss_pred HHH
Q 040316 390 LLG 392 (957)
Q Consensus 390 vLl 392 (957)
.+-
T Consensus 216 ~~~ 218 (240)
T 3l9t_A 216 ELK 218 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=39.73 E-value=1.1e+02 Score=29.93 Aligned_cols=38 Identities=8% Similarity=0.262 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCc
Q 040316 158 VRVCFKRLVENLESSEPVILSAVVGVFCELCLKDPRSY 195 (957)
Q Consensus 158 vR~~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~ 195 (957)
.+.+..-|..+|...++.|+.-|+.++..+.+.-...|
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 34455567778888999999999999988877655444
No 129
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=38.39 E-value=30 Score=40.11 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=52.0
Q ss_pred HHHHHHHhhc----------CCCchHHHHHHHHHHHHhhhChH---HHhh--hhHhhcccccCCCHHHHHHHHHHHhhhc
Q 040316 274 AVVKVREFLV----------DDDPNLKYLGLQALSIIAPKHLW---AVLE--NKDFVIKSLSDGDYNIKLESLRLLMSMV 338 (957)
Q Consensus 274 ~v~~L~~fL~----------ssDpNlrYvaL~~L~~Iv~~~p~---~v~~--h~~~Il~cL~D~D~sIR~~ALeLL~~Lv 338 (957)
.+++|..+|. ++||.+--||+.=+..++..||. ++.+ -+..||.+++++|+.||..||-.+..+.
T Consensus 396 llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 396 IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5566777774 35899999999999999999984 3443 3678899999999999999999887653
No 130
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=36.14 E-value=1.6e+02 Score=35.12 Aligned_cols=219 Identities=14% Similarity=0.025 Sum_probs=116.7
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCCccCchHHHHHHHhhcCChHHHHHHHHHHHhhccCChHHHhHHHHHHH
Q 040316 162 FKRLVENLESSEPVILSAVVGVFCELCLKDPRSYLPLAPEFYKILVDSKNNWLLIKVLKIFAKLATLEPRLAKRVVEPIC 241 (957)
Q Consensus 162 ~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~~l~Lap~L~~iL~~~~npWlqIkILkLL~~l~p~ep~L~~kLl~~L~ 241 (957)
+..|..-|-|+.-.+-..|...|.||.+..+.-.-.. ...|.=+.++++-+|+. .+. .
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~---------~~~N~DLAvRLLCVLAL-DRF------------G 233 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ---------IRVDSKLFSKIYEILVT-DKF------------N 233 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC---------CCCCTTHHHHHHHHHHH-BCC------------B
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee---------ccccHHHHHHHHHHHHh-ccc------------c
Confidence 3456666778999999999999999998775311000 01111223333333322 110 0
Q ss_pred HHhhcCCcchHHHHHHH----HHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcc
Q 040316 242 EFMRRTEAKSLLFECIR----TVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIK 317 (957)
Q Consensus 242 ~lL~~t~a~SVLyE~I~----~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~ 317 (957)
+..+- ..-|=+.|++- ++ ..++.. . .++..|...+....=++|+-||..|..+...-.. +..-...++.
T Consensus 234 DYVSD-qVVAPVRETaAQtLGaL-~hLp~e---~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~ 306 (800)
T 3oc3_A 234 DFVDD-RTVAPVRDAAAYLLSRI-YPLIGP---N-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVS 306 (800)
T ss_dssp BCSSS-SCBCHHHHHHHHHHHHH-TTTSCS---C-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHH
T ss_pred ccccC-eeeeehHHHHHHHHHHH-HhCChh---H-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 00000 11112222211 12 223332 1 1223333344667778999888877766211111 4445677788
Q ss_pred cccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcCh-H-HHHHHHHHHHHHHhhhhcccccchHHHHHHHHHhh
Q 040316 318 SLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDP-E-FCNQILGSILSTCCRNLYEVIVDFDWYASLLGEMV 395 (957)
Q Consensus 318 cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~-~-~r~elI~aI~~ic~~~~y~~~~dfeWyvdvLl~Ll 395 (957)
+|.|+|--||.-|-+.|.-++..+-+..++..|-.-+.+-|+ + -..-++.-+..+|+.. ..+....-.|-.|.-++
T Consensus 307 GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p--~~a~~dp~LVPRL~PFL 384 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYREN--PELSIPPERLKDIFPCF 384 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHC--TTCCCCSGGGGGTGGGG
T ss_pred hcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCC--cccccChHHHHHHHhhh
Confidence 999999999999999999999888899999999998887643 1 1222333333444432 11111112333344555
Q ss_pred ccCCcchHHHHHHHHH
Q 040316 396 RIPHCQKGEEIEHQII 411 (957)
Q Consensus 396 ~~~~~~v~~eI~~~L~ 411 (957)
+..-..|...++..+.
T Consensus 385 RHtITSVR~AVL~TL~ 400 (800)
T 3oc3_A 385 TSPVPEVRTSILNMVK 400 (800)
T ss_dssp TCSSHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHH
Confidence 5554445544444443
No 131
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=36.11 E-value=2.7e+02 Score=31.88 Aligned_cols=128 Identities=13% Similarity=0.209 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHhhccCCchhh--HhhhHHHHHHhhhhhh----HHHHHHHHHhhhcCCChhHH
Q 040316 104 TPVILLITNQLRKDLNSSNQFEVSLALECLSRIGNVDL--ARDLTPEVFTLLSSNA----VRVCFKRLVENLESSEPVIL 177 (957)
Q Consensus 104 ~dlllLatNtLkKDL~s~Np~vr~LALr~Ls~I~tpeL--a~~L~~~V~klL~~~A----vR~~~~kL~elL~D~D~sVv 177 (957)
+.++..++-.+.||-+-..+.++++ |+.=+.-.++.- .-....+|+..+.... ...+|.+|..++.+.+..|.
T Consensus 265 ~qL~ycv~qf~eKDp~L~~~vi~~L-Lk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVA 343 (449)
T 2npp_B 265 PQLAYCVVQFLEKDSTLTEPVVMAL-LKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVA 343 (449)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHH-HHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 5677788888888887777788777 677666665432 2222233333333322 23468889999999999999
Q ss_pred HHHHHHH-----HHhhhcCCCCccCchHHHHHHH-hhcCChHH---HHHHHHHHHhhccCChHHHhH
Q 040316 178 SAVVGVF-----CELCLKDPRSYLPLAPEFYKIL-VDSKNNWL---LIKVLKIFAKLATLEPRLAKR 235 (957)
Q Consensus 178 ~AAv~vL-----~EI~~~np~~~l~Lap~L~~iL-~~~~npWl---qIkILkLL~~l~p~ep~L~~k 235 (957)
-.|+.+. ..+...+.. .+.|.+|.-| ....+-|- +-....++..+...+|.+..+
T Consensus 344 ErAL~~w~N~~i~~li~~n~~---~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~ 407 (449)
T 2npp_B 344 ERALYYWNNEYIMSLISDNAA---KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDD 407 (449)
T ss_dssp HHHHGGGGCHHHHHHHHTTHH---HHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHhchh---hhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 9998754 344444433 2346666655 33456674 333444444455555555443
No 132
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=32.88 E-value=95 Score=30.29 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=54.8
Q ss_pred CcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHhhhChHHHhhhh------Hh-hcccc
Q 040316 248 EAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVD-DDPNLKYLGLQALSIIAPKHLWAVLENK------DF-VIKSL 319 (957)
Q Consensus 248 ~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~s-sDpNlrYvaL~~L~~Iv~~~p~~v~~h~------~~-Il~cL 319 (957)
.+.+..+|.+-.|=. -+ ...+.|+..|++-|.+ .+++..+.||..|-.+++.....|...+ .. +...+
T Consensus 32 ~Dw~~ileicD~In~-~~---~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~ 107 (152)
T 3rru_A 32 EDWGQFMHICDIINT-TQ---DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLL 107 (152)
T ss_dssp CCHHHHHHHHHHHHH-ST---THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGG
T ss_pred ccHHHHHHHHHHHhC-CC---ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHh
Confidence 445667776655433 12 2345677777777764 5788899999999999987654443322 22 33333
Q ss_pred cC---CCHHHHHHHHHHHhhhcC
Q 040316 320 SD---GDYNIKLESLRLLMSMVS 339 (957)
Q Consensus 320 ~D---~D~sIR~~ALeLL~~Lvn 339 (957)
++ .+..||.+.|+++..-+.
T Consensus 108 ~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 108 NPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCcHHHHHHHHHHHHHHHH
Confidence 43 234688888888876653
No 133
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=31.45 E-value=4.1e+02 Score=29.88 Aligned_cols=168 Identities=13% Similarity=0.180 Sum_probs=87.8
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhhcCCCC--c--cCchHHHHHHHhhcCChHHHHHHHHHHHhhc-----cCChH
Q 040316 161 CFKRLVENLESSEPVILSAVVGVFCELCLKDPRS--Y--LPLAPEFYKILVDSKNNWLLIKVLKIFAKLA-----TLEPR 231 (957)
Q Consensus 161 ~~~kL~elL~D~D~sVv~AAv~vL~EI~~~np~~--~--l~Lap~L~~iL~~~~npWlqIkILkLL~~l~-----p~ep~ 231 (957)
.+.+|.+++..+|+.-......++..|-.+.... | ..+...|++.+......-+...+|++|+.+. |..++
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKee 254 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 254 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 4567778888888877777777776665544321 1 1112234444444444455666777766543 33333
Q ss_pred HHhHHHHHHHHHhhcCCcc----hHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhh--cCCCchHHHHHHHHHHHHhhh-C
Q 040316 232 LAKRVVEPICEFMRRTEAK----SLLFECIRTVLSSLSEYESAVKLAVVKVREFL--VDDDPNLKYLGLQALSIIAPK-H 304 (957)
Q Consensus 232 L~~kLl~~L~~lL~~t~a~----SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL--~ssDpNlrYvaL~~L~~Iv~~-~ 304 (957)
-..-+...+.++... ... .-+-.|+..++. ..+++...++..|.++= .++..++-| |.-|..|+.. .
T Consensus 255 hk~Fl~~vLlPLhk~-~~l~~y~~qL~ycv~qf~e---KDp~L~~~vi~~LLk~WP~tns~KevlF--L~eleeiLe~~~ 328 (392)
T 2jak_A 255 HKIFLLKVLLPLHKV-KSLSVYHPQLAYCVVQFLE---KDSTLTEPVVMALLKYWPKTHSPKEVMF--LNELEEILDVIE 328 (392)
T ss_dssp HHHHHHHTTGGGGTS-GGGGGTHHHHHHHHHHHHH---HCGGGHHHHHHHHHHSSCSSCCTTHHHH--HHHHHHHHHTCC
T ss_pred HHHHHHHHhHhhccC-CcHHHhHHHHHHHHHHHHh---cCchhHHHHHHHHHHhCCCCCchHHHHH--HHHHHHHHHhCC
Confidence 222234444444432 222 223355554443 33455555555555543 333444444 4444555442 3
Q ss_pred hHHHh----hhhHhhcccccCCCHHHHHHHHHHH
Q 040316 305 LWAVL----ENKDFVIKSLSDGDYNIKLESLRLL 334 (957)
Q Consensus 305 p~~v~----~h~~~Il~cL~D~D~sIR~~ALeLL 334 (957)
|.-++ +-...+-.|++.+...|..+||.+.
T Consensus 329 ~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 329 PSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 33333 3345556788888888888887764
No 134
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=29.40 E-value=1.1e+03 Score=30.80 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHhhcCCcchHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhChHHHhhhhHhhcccc
Q 040316 240 ICEFMRRTEAKSLLFECIRTVLSSLSEYESAVKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHLWAVLENKDFVIKSL 319 (957)
Q Consensus 240 L~~lL~~t~a~SVLyE~I~~Ii~~l~~~~~li~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p~~v~~h~~~Il~cL 319 (957)
+.+++...+ ..+--+.|..+=..+.+.. ...++..|..+|.. ++.+.-.+|.+|..+- -.++...+-+..++.+|
T Consensus 162 i~~vl~vap-~~lQ~diI~sLPeIl~ds~--H~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~-Ls~~~l~~vr~~vl~~L 236 (1323)
T 3s4w_B 162 MMQLISVAP-VNLQHDFITSLPEILGDSQ--HANVGKELGELLVQ-NTSLTVPILDVFSSLR-LDPNFLSKIRQLVMGKL 236 (1323)
T ss_dssp HHHHHHHSC-TTTHHHHHHTHHHHSCGGG--HHHHHHHHHHHHHH-CSTTHHHHHHHHHHSC-CCHHHHHHHHHHHHHST
T ss_pred HHHHHHhCc-HHHHHHHHHHhHHHhcchh--hHHHHHHHHHHHhc-CcchHHHHHHHHHcCC-CCHHHHHHHHHHHHHHh
Confidence 334444322 3566666655444444322 23567778787754 6778888888888873 56777777777777777
Q ss_pred cCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhh
Q 040316 320 SDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALK 356 (957)
Q Consensus 320 ~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~ 356 (957)
.+-+...==-.+..|..-++.+|+.++|.+|.+.+.-
T Consensus 237 ~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~ 273 (1323)
T 3s4w_B 237 SSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNV 273 (1323)
T ss_dssp TSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHC
T ss_pred ccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCc
Confidence 7543333334566677778899999999999886643
No 135
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=28.44 E-value=3.6e+02 Score=27.30 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=32.7
Q ss_pred hcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 040316 315 VIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINYALKSDPEFCNQILGSILSTCC 374 (957)
Q Consensus 315 Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~yl~~sD~~~r~elI~aI~~ic~ 374 (957)
+.....|++..+|+-|+..++.-..+.+...+.. ++..+...+..|.+++|.=.+.-|.
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~-i~~~~~~d~~~yV~kavgW~Lr~~~ 187 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKK-AIIYDRTTEEFFIQKAIGWSLRQYS 187 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHH-HHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHhCCChHHHHHHHHHHHHHHHH
Confidence 4455667777777777776666556656544433 3332233444566665554444443
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.43 E-value=96 Score=30.01 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=33.7
Q ss_pred HHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcccHHHHHHHHHHH
Q 040316 306 WAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSESNVAEISRVLINY 353 (957)
Q Consensus 306 ~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~Nv~~IV~ELl~y 353 (957)
..+..-.+.++..|++.+..++.+||.||--+|...+ ..++.++..+
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~ 91 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRN 91 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHh
Confidence 5566777888889999999999999999877765543 3344444333
No 137
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=26.53 E-value=1.5e+02 Score=33.09 Aligned_cols=42 Identities=7% Similarity=0.194 Sum_probs=31.3
Q ss_pred hHhhcccccCCCHHHHHHHHHHHhhhcCcc---c-HHHHHHHHHHH
Q 040316 312 KDFVIKSLSDGDYNIKLESLRLLMSMVSES---N-VAEISRVLINY 353 (957)
Q Consensus 312 ~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~---N-v~~IV~ELl~y 353 (957)
...+..||+.+.+.+|..+++||..+|.-. . ...|+.-|-.|
T Consensus 102 i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~ 147 (386)
T 2bnx_A 102 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 147 (386)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 366777899888999999999999888743 2 55565555544
No 138
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=26.52 E-value=1.7e+02 Score=32.71 Aligned_cols=42 Identities=7% Similarity=0.192 Sum_probs=32.7
Q ss_pred hHhhcccccCCCHHHHHHHHHHHhhhcCc---cc-HHHHHHHHHHH
Q 040316 312 KDFVIKSLSDGDYNIKLESLRLLMSMVSE---SN-VAEISRVLINY 353 (957)
Q Consensus 312 ~~~Il~cL~D~D~sIR~~ALeLL~~Lvne---~N-v~~IV~ELl~y 353 (957)
...|..||+.+.+.+|..+++||..+|.- .| ...|++-|-.|
T Consensus 164 i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~ 209 (383)
T 3eg5_B 164 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 209 (383)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHH
Confidence 46777889999999999999999888753 45 66676666554
No 139
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=26.35 E-value=4.2e+02 Score=25.44 Aligned_cols=72 Identities=18% Similarity=0.067 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhCh-HHH---hhhhHhhccc-----ccCC------CHHHHHHHHHHHh
Q 040316 271 VKLAVVKVREFLVDDDPNLKYLGLQALSIIAPKHL-WAV---LENKDFVIKS-----LSDG------DYNIKLESLRLLM 335 (957)
Q Consensus 271 i~l~v~~L~~fL~ssDpNlrYvaL~~L~~Iv~~~p-~~v---~~h~~~Il~c-----L~D~------D~sIR~~ALeLL~ 335 (957)
...++..|-+=|.++++|++|=+|..|..++..-+ .++ +.|...|=.| ..|| -..||.+|=+|+-
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 34455666566678899999999999999987543 332 3344433223 2232 2677888888888
Q ss_pred hhcCccc
Q 040316 336 SMVSESN 342 (957)
Q Consensus 336 ~Lvne~N 342 (957)
.|-+.++
T Consensus 127 ll~d~~~ 133 (140)
T 1vdy_A 127 AIFSEEN 133 (140)
T ss_dssp HHTCCSS
T ss_pred HHhCcCC
Confidence 7776654
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=23.99 E-value=4.6e+02 Score=24.76 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHhhhChHHHhhhhHhhcccccCCCHHHHHHHHHHHhhhcCcc--cH------HHHHHHHHHHhhhcChHHHHHHHHH
Q 040316 297 LSIIAPKHLWAVLENKDFVIKSLSDGDYNIKLESLRLLMSMVSES--NV------AEISRVLINYALKSDPEFCNQILGS 368 (957)
Q Consensus 297 L~~Iv~~~p~~v~~h~~~Il~cL~D~D~sIR~~ALeLL~~Lvne~--Nv------~~IV~ELl~yl~~sD~~~r~elI~a 368 (957)
+..++...+.--+.-...|-..|...++.+..+||.||-.++..- -+ ...+++|.+-+...++..+.+++.-
T Consensus 29 icD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~l 108 (140)
T 3ldz_A 29 ICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKAL 108 (140)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 333333333322333334444566677889999999887765421 11 3344555555555666666666655
Q ss_pred HHHHH
Q 040316 369 ILSTC 373 (957)
Q Consensus 369 I~~ic 373 (957)
|...+
T Consensus 109 i~~W~ 113 (140)
T 3ldz_A 109 MVEWT 113 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
Done!