BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040317
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1
Length = 393
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 87/149 (58%), Gaps = 24/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
+ IN ++ ++ V++ NSP TDGI +Q S+GVTI +S I TG+ V+
Sbjct: 173 IVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLW 232
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG E GVQNVTV + +F+ TQNG+RIK W RP G+ARNI
Sbjct: 233 IEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNIL 292
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
F++ M +++NPI+ID++YC N+GCP Q
Sbjct: 293 FQHATMVNVENPIVIDQHYCPDNKGCPGQ 321
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana
GN=At2g43860 PE=2 SV=1
Length = 405
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
+ I++ +++ I VK+ NSP TDGI ++SS V IT+S I TG+ ++
Sbjct: 179 IVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGSTNVF 238
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG E+GV NVTV++ F T NGVRIK W + N +ARNI
Sbjct: 239 IQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIV 298
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
F++I M ++NPIIID++YC ++ CP Q
Sbjct: 299 FQHINMKMVKNPIIIDQHYC-LHKPCPKQ 326
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1
Length = 407
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 24/139 (17%)
Query: 6 CSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN-------------- 51
C +I + +KI P SP TDGI M S GV I +S I TG+ ++
Sbjct: 180 CKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEIT 239
Query: 52 ----------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNII 101
LG NEE V+ + +++ + TNT NG RIK W G I F +I
Sbjct: 240 CGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDIT 299
Query: 102 MNDIQNPIIIDRNYCSYNR 120
MN++ +PI+ID+ YC +N+
Sbjct: 300 MNNVSSPILIDQQYCPWNK 318
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1
Length = 407
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 24/139 (17%)
Query: 6 CSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN-------------- 51
C +I + +KI P SP TDGI M S GV I +S I TG+ ++
Sbjct: 180 CKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEIT 239
Query: 52 ----------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNII 101
LG NEE V+ + +++ + TNT NG RIK W G I F +I
Sbjct: 240 CGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDIT 299
Query: 102 MNDIQNPIIIDRNYCSYNR 120
MN++ +PI+ID+ YC +N+
Sbjct: 300 MNNVSSPILIDQQYCPWNK 318
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2
PE=1 SV=1
Length = 377
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 25/145 (17%)
Query: 5 HCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN------------- 51
C DI ++V + P S TDGI + S GVTIT++ I TG+ ++
Sbjct: 158 ECEDITFQHVTVTAPGTSINTDGIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQV 217
Query: 52 -----------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNI 100
LG + NE+ V+ +TV +F+ T NGVR+K W G A ++ F+++
Sbjct: 218 NCGPGHGISIGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDL 277
Query: 101 IMNDIQNPIIIDRNYCSYNRGCPHQ 125
MN++QNP+I+D+ YC Y + C Q
Sbjct: 278 TMNNVQNPVILDQEYCPYGQ-CSRQ 301
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana
GN=At1g80170 PE=1 SV=1
Length = 444
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
+A+ C + I +K+I P SP TDGI + S G+ I ++++ TG+ ++
Sbjct: 203 IALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQIS 262
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG + E V+++TV ++ ++T NGVRIK W + +G I
Sbjct: 263 ISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTW-QGGSGLVSKII 321
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
FRNI MN++ NPIIID+ YC + C +Q
Sbjct: 322 FRNIKMNNVSNPIIIDQYYCDSRKPCANQ 350
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1
Length = 462
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
++ + C D++ N+ + P +SP TDGI + + + + +S I TG+ ++
Sbjct: 232 LSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVI 291
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LGD +E V V V + +T NG+RIK W + +G A+NI
Sbjct: 292 ATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTW-QGGSGSAKNIK 350
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
F+NI+M+++ NPIIID+ YC CP Q
Sbjct: 351 FQNIVMHNVTNPIIIDQYYCDSKDPCPEQ 379
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1
Length = 396
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 24/142 (16%)
Query: 3 INHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPF------------- 49
+N C ++ + P NSP TDGI + S+ V IT S+ TG+
Sbjct: 169 VNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYIT 228
Query: 50 -----------VNRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFR 98
V LG + +E+ V V V + +FTNT NGVRIK W G ++ F
Sbjct: 229 RVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFE 288
Query: 99 NIIMNDIQNPIIIDRNYCSYNR 120
+II+ ++ NP++ID+ YC +N+
Sbjct: 289 DIIVQNVSNPVVIDQVYCPFNK 310
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2
Length = 439
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
+ C ++ N+ + P +SP TDGI + + + I S + TG+ ++
Sbjct: 219 LTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVR 278
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG+ +E V NV V ++ T NGVRIK W + +G A+NI
Sbjct: 279 ATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTW-QGGHGMAKNII 337
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
F++IIM ++ NPIII+++YC CP Q
Sbjct: 338 FQDIIMKNVTNPIIINQDYCDRVEACPEQ 366
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1
Length = 460
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 26/148 (17%)
Query: 3 INHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN----------- 51
+C ++ + + P +SP TDGI + ++ +TI+SS I TG+ ++
Sbjct: 248 FQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQAT 307
Query: 52 -------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFR 98
LG+ +E+ V V V + + T NG+RIK W + +G A NI F+
Sbjct: 308 DITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTW-KGGSGSATNIVFQ 366
Query: 99 NIIMNDIQNPIIIDRNYCSYN-RGCPHQ 125
N+ MND+ NPIIID+NYC + + C Q
Sbjct: 367 NVQMNDVTNPIIIDQNYCDHKTKDCKQQ 394
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3
PE=2 SV=1
Length = 422
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 24/131 (18%)
Query: 11 IRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN------------------- 51
I+N+K+ P SP TDGI + ++ V+I S+I TG+ V+
Sbjct: 205 IQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGH 264
Query: 52 -----RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQ 106
LG + NEE V + V + + T NG+RIK W A +I F NIIM ++
Sbjct: 265 GLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVK 324
Query: 107 NPIIIDRNYCS 117
NPIIID+NY S
Sbjct: 325 NPIIIDQNYGS 335
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
Length = 467
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
++ ++C ++ N+ + P NSP TDGI + + + I+S I TG+ ++
Sbjct: 237 VSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVR 296
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG +E V +V V + T NGVRIK W + +G A NI
Sbjct: 297 VNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTW-QGGSGSASNIK 355
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
F+N+ M++++NPIIID+NYC ++ C Q
Sbjct: 356 FQNVEMHNVENPIIIDQNYCDQDKPCQEQ 384
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1
Length = 431
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 26/149 (17%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
++I C+ + + NV+I P +SP TDGI + ++ + +++S I TG+ ++
Sbjct: 218 ISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQ 277
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LGD ++ V + V + F+ + NGVRIK + + +G A+NI
Sbjct: 278 IFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTY-QGGSGTAKNIK 336
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
F+NI M +++NPIIID++YC ++ C Q
Sbjct: 337 FQNIRMENVKNPIIIDQDYCDKDK-CEDQ 364
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1
Length = 362
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 24/139 (17%)
Query: 6 CSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPF---------------- 49
C ++ KI S TDGI + S GV I ++ I TG+
Sbjct: 138 CKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCISLGDGSKNINITNIT 197
Query: 50 --------VNRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNII 101
V LG + NEE V + V + + T +QNGVRIK W + G A + F++I
Sbjct: 198 CGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTWPKSEPGEASEMHFQDIT 257
Query: 102 MNDIQNPIIIDRNYCSYNR 120
MN + PI+ID+ YC YN+
Sbjct: 258 MNSVGTPILIDQGYCPYNQ 276
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana
GN=At3g07850 PE=1 SV=2
Length = 444
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 27/152 (17%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
M I +C +I + ++ I P S TDGI + S GV + + I TG+ V+
Sbjct: 215 MNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLI 274
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG + NE+ V+ VTV NT NGVRIK W G A NI
Sbjct: 275 VENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNIL 334
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNR---GCPHQ 125
F +I M+++ P++ID+ YC Y G P Q
Sbjct: 335 FEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQ 366
>sp|Q40312|PGLR_MEDSA Polygalacturonase OS=Medicago sativa PE=2 SV=1
Length = 421
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 6 CSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN-------------- 51
C +I I P +SP TDGI M ST V I +++I TG+ V+
Sbjct: 178 CKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVN 237
Query: 52 ----------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWA-RPRNGYARNIAFRNI 100
LG EE V+ +TV + + T T NGVRIK W P +I F +I
Sbjct: 238 CGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDI 297
Query: 101 IMNDIQNPIIIDRNYCSYNR 120
M +++NP+IID+ Y +N+
Sbjct: 298 TMTNVKNPVIIDQEYYPWNQ 317
>sp|P35337|PGLR_BRANA Polygalacturonase OS=Brassica napus PE=2 SV=1
Length = 397
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 13 NVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEP------------------------ 48
N+KII P SP TDGI + GV I ++ I TG+
Sbjct: 176 NIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGI 235
Query: 49 FVNRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPR-NGYARNIAFRNIIMNDIQN 107
V LG + E+ V ++TV + + T NG+RIK W A I F +II+N + N
Sbjct: 236 SVGSLGRYGWEQDVTDITVKNCTLEGTSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSN 295
Query: 108 PIIIDRNYCSYNR 120
PI+ID+ YC +N+
Sbjct: 296 PILIDQEYCPWNQ 308
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1
Length = 410
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
M + C D+LI++V + P +SP TDGI M S+GVTIT++ I G+ ++
Sbjct: 187 MNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVN 246
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGY-ARNI 95
LG + +E+ V ++ V + T NGVRIK + + A I
Sbjct: 247 ITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAASVLTASKI 306
Query: 96 AFRNIIMNDIQNPIIIDRNYCSYNRGC 122
+ NI M D PIIID YC N+ C
Sbjct: 307 HYENIKMEDSGYPIIIDMKYCP-NKLC 332
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1
Length = 457
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
+ C++++ N+ I SP TDG+ + ++ + I+ + I TG+ ++
Sbjct: 224 IKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSQNVQ 283
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG +E V NVTV + +NGVRIK W + +G A NI
Sbjct: 284 ATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTW-QGGSGQASNIK 342
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
F N+ M D++ PIIID+NYC C Q
Sbjct: 343 FLNVEMQDVKYPIIIDQNYCDRVEPCIQQ 371
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana
GN=At3g15720 PE=1 SV=1
Length = 456
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 25/137 (18%)
Query: 3 INHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPF------------- 49
I+ C+ + I +++I P +SP TDGI + +S+ V I I TG+
Sbjct: 166 ISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHIS 225
Query: 50 -----------VNRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFR 98
+ LG V+NV V + +F T NG RIK W + +GYAR I F
Sbjct: 226 GIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTW-QGGSGYARMITFN 284
Query: 99 NIIMNDIQNPIIIDRNY 115
I +++++NPIIID+ Y
Sbjct: 285 GITLDNVENPIIIDQFY 301
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1
Length = 410
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 26/147 (17%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
M + C D+LI++V + P +SP TDGI M S+G+TIT++ I G+ ++
Sbjct: 187 MNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVN 246
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYA-RNI 95
LG + +E+ V ++ V + T GVRIK + + I
Sbjct: 247 ITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKI 306
Query: 96 AFRNIIMNDIQNPIIIDRNYCSYNRGC 122
+ NI M D NPI ID YC N+ C
Sbjct: 307 HYENIKMEDSANPIFIDMKYCP-NKLC 332
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2
Length = 433
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 25/144 (17%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
++I CS++ + NV + P +SP TDGI + ++ + ++ S I TG+ ++
Sbjct: 218 ISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQ 277
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LGD ++ V VTV + + T NGVRIK + + +G A NI
Sbjct: 278 INDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTY-QGGSGTASNII 336
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNR 120
F+NI M++++NPIIID++YC ++
Sbjct: 337 FQNIQMDNVKNPIIIDQDYCDKSK 360
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFV---------- 50
+ C + I+ +KI P +SP TDGI + +S I +I TG+ V
Sbjct: 210 LVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTGSSNIT 269
Query: 51 --------------NRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG + V V + + F +TQNG+RIK W + +G A +I
Sbjct: 270 IKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTW-QGGSGLASHIT 328
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
+ N+ M + +NPI+I++ YC+ C +Q
Sbjct: 329 YENVEMINAENPILINQFYCTSAAACKNQ 357
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1
Length = 410
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 26/147 (17%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
M + C ++LI++V + P +SP TDGI M S+G+TIT++ I G+ ++
Sbjct: 187 MNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVN 246
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYA-RNI 95
LG + +E+ V ++ V + T GVRIK + + I
Sbjct: 247 ITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKI 306
Query: 96 AFRNIIMNDIQNPIIIDRNYCSYNRGC 122
+ NI M D NPI ID YC N+ C
Sbjct: 307 HYENIKMEDSANPIFIDMKYCP-NKLC 332
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPF----------- 49
+ C + I+ +KI P +SP TDGI + +S I I TG+
Sbjct: 209 LVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNIT 268
Query: 50 -------------VNRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
+ LG + V +V V + F +TQNG+RIK W + +G A I
Sbjct: 269 IKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTW-QGGSGLASYIT 327
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
+ N+ M + +NPI+I++ YC+ C +Q
Sbjct: 328 YENVEMINSENPILINQFYCTSASACQNQ 356
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFV---------- 50
+ +C + I + I P +SP TDGI + +S + ++I TG+ V
Sbjct: 209 LVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIV 268
Query: 51 --------------NRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG + V V V + F +TQNG+RIK W + +G A +I
Sbjct: 269 IEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTW-QGGSGMASHII 327
Query: 97 FRNIIMNDIQNPIIIDRNYCSYNRGCPHQ 125
+ N+ M + +NPI+I++ YC+ C +Q
Sbjct: 328 YENVEMINSENPILINQFYCTSASACQNQ 356
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100
PE=2 SV=1
Length = 475
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 1 MAINHCSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN--------- 51
M + C +LI ++I P SP TDGI + ++ V I +S + G+ ++
Sbjct: 236 MKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVD 295
Query: 52 ---------------RLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIA 96
LG H ++ V N+TV ++ ++ NG+R+K W + G N+
Sbjct: 296 IQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTW-QGGTGSVSNLL 354
Query: 97 FRNIIMNDIQNPIIIDRNYC 116
F NI M ++ N II+D+ YC
Sbjct: 355 FENIQMENVLNCIIVDQYYC 374
>sp|A1DAX2|PGXB_NEOFI Probable exopolygalacturonase B OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pgxB
PE=3 SV=1
Length = 453
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 27/122 (22%)
Query: 25 TDGIQMQSSTGVTITSSSIMTGEP-----------FVNRL---GDHLNEEG--------- 61
TDG + G+T+T++ + G+ FV L G H G
Sbjct: 233 TDGFDTLNVDGLTVTNTRVDIGDDCLSPKPNTTNVFVQNLWCNGTHGTSMGSIGQYPGVL 292
Query: 62 --VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNYCS 117
++NV + + + N +NG R+K WA P GY R N+ ++NI + + NPI++D+ Y +
Sbjct: 293 DIIENVWIENVTLLNGENGARLKAWAGPNVGYGRINNVTYKNIHVENTDNPIVLDQCYFN 352
Query: 118 YN 119
N
Sbjct: 353 IN 354
>sp|Q4WBK6|PGXB_ASPFU Probable exopolygalacturonase B OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pgxB
PE=3 SV=2
Length = 453
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 27/122 (22%)
Query: 25 TDGIQMQSSTGVTITSSSIMTGEP-----------FVNRL---GDHLNEEG--------- 61
TDG + G+T+T++ + G+ FV L G H G
Sbjct: 233 TDGFDTLNVDGLTVTNTRVDIGDDCLSPKPNTTNVFVKNLWCNGTHGASMGSIGQYPGVL 292
Query: 62 --VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNYCS 117
++NV + + + N +NG R+K WA P GY R N+ ++NI + + NPI++D+ Y +
Sbjct: 293 DIIENVWIENVTLLNGENGARLKAWAGPDVGYGRINNVTYKNIHVENTDNPIVLDQCYFN 352
Query: 118 YN 119
N
Sbjct: 353 IN 354
>sp|B0YAA4|PGXB_ASPFC Probable exopolygalacturonase B OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=pgxB PE=3 SV=2
Length = 453
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 27/122 (22%)
Query: 25 TDGIQMQSSTGVTITSSSIMTGEP-----------FVNRL---GDHLNEEG--------- 61
TDG + G+T+T++ + G+ FV L G H G
Sbjct: 233 TDGFDTLNVDGLTVTNTRVDIGDDCLSPKPNTTNVFVKNLWCNGTHGASMGSIGQYPGVL 292
Query: 62 --VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNYCS 117
++NV + + + N +NG R+K WA P GY R N+ ++NI + + NPI++D+ Y +
Sbjct: 293 DIIENVWIENVTLLNGENGARLKAWAGPDVGYGRINNVTYKNIHVENTDNPIVLDQCYFN 352
Query: 118 YN 119
N
Sbjct: 353 IN 354
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1
Length = 312
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 34/144 (23%)
Query: 6 CSDILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPFVN-RLG--------DH 56
C D+ II P +SP TDG +S V I+ G+ + + G DH
Sbjct: 53 CEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDH 112
Query: 57 LNEE-------------------------GVQNVTVTSSSFTNTQNGVRIKLWARPRNGY 91
L E GV +VTV T G+R+K AR G
Sbjct: 113 LAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGM 172
Query: 92 ARNIAFRNIIMNDIQNPIIIDRNY 115
NI R ++++ +Q + + +Y
Sbjct: 173 VGNITMRRVLLDGVQTALSANAHY 196
>sp|Q27UB1|PGXB_ASPNG Exopolygalacturonase B OS=Aspergillus niger GN=pgxB PE=3 SV=1
Length = 438
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNYCSYN 119
++NV + + + N QNG R+K WA GY R N+ ++NI + + PI++D+ Y N
Sbjct: 295 IENVYIENVTLLNGQNGARLKAWAGQDVGYGRINNVTYKNIQIQNTDAPIVLDQCYFDIN 354
>sp|A2QHG0|PGXB_ASPNC Probable exopolygalacturonase B OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=pgxB PE=3 SV=1
Length = 438
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNYCSYN 119
++NV + + + N QNG R+K WA GY R N+ ++NI + + PI++D+ Y N
Sbjct: 295 IENVYIENVTLLNGQNGARLKAWAGQDVGYGRINNVTYKNIQIQNTDAPIVLDQCYFDIN 354
>sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium carotovorum subsp.
carotovorum GN=peh PE=3 SV=1
Length = 402
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 16 IIDPTNSPTTDGIQMQSSTGVTITSSSIMTGE----------------------PFVNRL 53
I P+ + TDGI SS +TI S+I TG+ F
Sbjct: 218 IKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIKAYKGRSETRNISILHNEFGTGH 277
Query: 54 GDHLNEE--GVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQNPIII 111
G + E GV NVTV T T NG+RIK + G + + N++M ++ PI+I
Sbjct: 278 GMSIGSETMGVYNVTVDDLIMTGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVI 336
Query: 112 DRNY 115
D Y
Sbjct: 337 DTVY 340
>sp|P26509|PGLR2_PECSS Endo-polygalacturonase OS=Pectobacterium sp. (strain SCC3193)
GN=pehA PE=1 SV=1
Length = 402
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 25/124 (20%)
Query: 16 IIDPTNSPTTDGIQMQSSTGVTITSSSIMTGE----------------------PFVNRL 53
I P+ + TDGI SS +TI S+I TG+ F
Sbjct: 218 IKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGH 277
Query: 54 GDHLNEE--GVQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQNPIII 111
G + E GV NVTV T NG+RIK + G + + N++M ++ PI+I
Sbjct: 278 GMSIGSETMGVYNVTVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVI 336
Query: 112 DRNY 115
D Y
Sbjct: 337 DTVY 340
>sp|Q0C7H7|PGXB_ASPTN Probable exopolygalacturonase B OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=pgxB PE=3 SV=1
Length = 435
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNY 115
+++ + + + N QNG R+K WA GY R NI ++NI + + P+++D+ Y
Sbjct: 294 IEHAYIENVTLLNGQNGARLKAWAGENVGYGRINNITYKNIRIENTDKPVVLDQCY 349
>sp|Q2TW03|PGXB_ASPOR Probable exopolygalacturonase B OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=pgxB PE=3 SV=2
Length = 435
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNY 115
+++ + + + N QNG R+K WA GY R NI ++NI + + P+++D+ Y
Sbjct: 294 IEHAYIENVTLLNGQNGARLKAWAGQDVGYGRINNITYKNIRIENTDAPVVLDQCY 349
>sp|B8NX60|PGXB_ASPFN Probable exopolygalacturonase B OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=pgxB PE=3 SV=1
Length = 435
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNY 115
+++ + + + N QNG R+K WA GY R NI ++NI + + P+++D+ Y
Sbjct: 294 IEHAYIENVTLLNGQNGARLKAWAGQDVGYGRINNITYKNIRIENTDAPVVLDQCY 349
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 36/145 (24%)
Query: 8 DILIRNVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGE-------------------- 47
+ILI+ + I+ P SP TDGI S T I I++G+
Sbjct: 232 NILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPT 291
Query: 48 ------------PF--VNRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR 93
P+ V LG ++ G+Q+V N+++G+RIK R GY +
Sbjct: 292 KQLVIRRLTCISPYSAVIALGSEMS-GGIQDVRAEDIVAINSESGIRIKT-GIGRGGYVK 349
Query: 94 NIAFRNIIMNDIQNPIIIDRNYCSY 118
+I R + M ++ + NY S+
Sbjct: 350 DIYVRGMTMKTMKWAFWMTGNYGSH 374
>sp|Q873X6|PGXB_EMENI Probable exopolygalacturonase B OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pgxB
PE=2 SV=1
Length = 440
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYAR--NIAFRNIIMNDIQNPIIIDRNY 115
+++ + + + N +NG R+K WA GY R NI ++NI + + PI++D+ Y
Sbjct: 300 IEHAYIENVTLLNGENGARLKAWAGEDVGYGRINNITYKNIHVENTDYPIVLDQCY 355
>sp|Q1HAY5|PGLRB_ASPKA Probable endopolygalacturonase B OS=Aspergillus kawachii GN=pgaB
PE=3 SV=1
Length = 362
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
V +VT+++S N+QNGVRIK + G N+ F +I ++DI I+++++Y
Sbjct: 236 VNDVTISNSKVVNSQNGVRIKT-IYGKTGTVENVKFEDITLSDISKYGIVVEQDY 289
>sp|Q9P4W3|PGLRB_ASPNG Endopolygalacturonase B OS=Aspergillus niger GN=pgaB PE=1 SV=1
Length = 362
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
V +VT+++S N+QNGVRIK + G N+ F +I ++DI I+++++Y
Sbjct: 236 VNDVTISNSKVLNSQNGVRIKT-IYGKTGTVENVKFEDITLSDISKYGIVVEQDY 289
>sp|A2QCV8|PGLRB_ASPNC Probable endopolygalacturonase B OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=pgaB PE=3 SV=1
Length = 362
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
V +VT+++S N+QNGVRIK + G N+ F +I ++DI I+++++Y
Sbjct: 236 VNDVTISNSKVLNSQNGVRIKT-IYGKTGTVENVKFEDITLSDISKYGIVVEQDY 289
>sp|A1D145|PGLR_NEOFI Probable endopolygalacturonase NFIA_008150 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=NFIA_008150 PE=3 SV=1
Length = 378
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 26 DGIQMQSSTGVTITSSSIMTGEPF-VNRLGDHLNEEGVQNVTVTSSSFTNTQNGVRIKLW 84
D + + S TG+T T G + +G ++ V+NV+ T+S T + NG+RIK
Sbjct: 216 DCVAVNSGTGITFTGGLCSGGHGLSIGSVGGR-SDNTVENVSFTNSQVTKSDNGLRIKA- 273
Query: 85 ARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
++ + G + I + I ++ I+ I+I++NY
Sbjct: 274 SKGKTGTIKGITYSGITLSSIRKYGILIEQNY 305
>sp|P26214|PGLR2_ASPNG Endopolygalacturonase II OS=Aspergillus niger GN=pgaII PE=1 SV=1
Length = 362
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 14 VKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPF-VNRLGDHLNEEGVQNVTVTSSSF 72
V II P D + + S + T + + G + +GD N V+NVT+ S+
Sbjct: 190 VNIIKPWVHNQDDCLAVNSGENIWFTGGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHSTV 248
Query: 73 TNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
+N++N VRIK G I + NI+M+ I + ++I ++Y
Sbjct: 249 SNSENAVRIKT-ISGATGSVSEITYSNIVMSGISDYGVVIQQDY 291
>sp|A2R5S4|PGLR2_ASPNC Probable endopolygalacturonase II OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=pgaII PE=3 SV=1
Length = 362
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 14 VKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPF-VNRLGDHLNEEGVQNVTVTSSSF 72
V II P D + + S + T + + G + +GD N V+NVT+ S+
Sbjct: 190 VNIIKPWVHNQDDCLAVNSGENIWFTGGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHSTV 248
Query: 73 TNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
+N++N VRIK G I + NI+M+ I + ++I ++Y
Sbjct: 249 SNSENAVRIKT-ISGATGSVSEITYSNIVMSGISDYGVVIQQDY 291
>sp|Q8NK98|PGLR2_ASPKW Probable endopolygalacturonase II OS=Aspergillus kawachii (strain
NBRC 4308) GN=pgaII PE=3 SV=2
Length = 362
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 13 NVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPF-VNRLGDHLNEEGVQNVTVTSSS 71
V II P D + + S + T + + G + +GD N V+NVT+ S+
Sbjct: 189 GVNIIKPWVHNQDDCLAINSGENIWFTGGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHST 247
Query: 72 FTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
+N++N VRIK G I + NI+M+ I + ++I ++Y
Sbjct: 248 VSNSENAVRIKT-ISGATGSVSEITYSNIVMSGISDYGVVIQQDY 291
>sp|Q9P359|PGLR2_ASPAW Endopolygalacturonase II OS=Aspergillus awamori GN=pgaII PE=1 SV=1
Length = 362
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 13 NVKIIDPTNSPTTDGIQMQSSTGVTITSSSIMTGEPF-VNRLGDHLNEEGVQNVTVTSSS 71
V II P D + + S + T + + G + +GD N V+NVT+ S+
Sbjct: 189 GVNIIKPWVHNQDDCLAINSGENIWFTGGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHST 247
Query: 72 FTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
+N++N VRIK G I + NI+M+ I + ++I ++Y
Sbjct: 248 VSNSENAVRIKT-ISGATGSVSEITYSNIVMSGISDYGVVIQQDY 291
>sp|Q9Y834|PGLR1_PENOL Polygalacturonase 1 OS=Penicillium olsonii GN=PG1 PE=3 SV=1
Length = 370
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 62 VQNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
V+NVT++ S+ +N+ NG+RIK + + G ++ F NI +++I I+I+++Y
Sbjct: 246 VKNVTISDSTVSNSDNGIRIKTIYKAK-GEVADVTFSNIELSNIAKYGIVIEQDY 299
>sp|O42824|PGLR_PENJA Polygalacturonase OS=Penicillium janthinellum PE=3 SV=1
Length = 371
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 24/114 (21%)
Query: 25 TDGIQMQSSTGVTITSSSI----------------MTGEPFVNRLGDHLNEEG------V 62
TDG + STGVTI ++ + TG G + G V
Sbjct: 188 TDGFDISESTGVTIRNAVVKNQDDCIAINSGQNIYFTGGTCSGGHGLSIGSVGGRDDNTV 247
Query: 63 QNVTVTSSSFTNTQNGVRIKLWARPRNGYARNIAFRNIIMNDIQN-PIIIDRNY 115
+NVT+T S+ T++ NGVRIK G ++ F +I ++ I + I+I+++Y
Sbjct: 248 KNVTITDSTVTDSANGVRIKT-VYDATGSVSDVTFSDITVSGITDYGIVIEQDY 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,090,314
Number of Sequences: 539616
Number of extensions: 1583886
Number of successful extensions: 4662
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 4483
Number of HSP's gapped (non-prelim): 189
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)