Query 040318
Match_columns 366
No_of_seqs 162 out of 2243
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 7.1E-22 1.5E-26 205.4 16.2 224 4-258 91-319 (968)
2 PLN00113 leucine-rich repeat r 99.9 9.5E-22 2.1E-26 204.5 15.4 285 4-318 116-439 (968)
3 PLN03210 Resistant to P. syrin 99.9 6.1E-21 1.3E-25 199.6 16.8 285 5-325 610-911 (1153)
4 KOG4194 Membrane glycoprotein 99.9 1.3E-22 2.9E-27 185.5 3.7 282 6-318 125-427 (873)
5 KOG4658 Apoptotic ATPase [Sign 99.9 9.3E-22 2E-26 196.7 8.7 336 1-358 540-883 (889)
6 PLN03210 Resistant to P. syrin 99.8 1.1E-19 2.3E-24 190.3 15.7 286 4-330 556-892 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 3.4E-21 7.3E-26 177.9 1.2 303 4-340 76-394 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 3.2E-21 6.9E-26 178.0 -4.4 301 4-340 53-370 (1255)
9 KOG4194 Membrane glycoprotein 99.8 3E-20 6.5E-25 170.3 1.0 107 6-117 78-185 (873)
10 KOG0472 Leucine-rich repeat pr 99.6 8.9E-18 1.9E-22 147.9 -4.2 301 5-318 205-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.6 6.4E-18 1.4E-22 148.8 -8.9 234 3-258 65-308 (565)
12 PRK15387 E3 ubiquitin-protein 99.6 3E-14 6.6E-19 140.4 13.1 240 8-318 203-456 (788)
13 PRK15387 E3 ubiquitin-protein 99.5 5.7E-14 1.2E-18 138.5 12.7 240 30-345 201-458 (788)
14 KOG0618 Serine/threonine phosp 99.5 2.9E-16 6.2E-21 151.3 -4.5 107 6-120 219-325 (1081)
15 PRK15370 E3 ubiquitin-protein 99.5 8.9E-14 1.9E-18 137.7 10.1 244 7-318 179-426 (754)
16 KOG0618 Serine/threonine phosp 99.5 4.7E-16 1E-20 149.9 -5.9 246 5-295 240-488 (1081)
17 KOG0617 Ras suppressor protein 99.5 8.2E-16 1.8E-20 120.8 -4.6 158 3-208 30-189 (264)
18 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 137.0 7.7 202 6-259 199-400 (754)
19 KOG4237 Extracellular matrix p 99.4 9E-15 2E-19 128.9 -1.8 245 7-291 68-354 (498)
20 cd00116 LRR_RI Leucine-rich re 99.4 3.2E-14 7E-19 129.6 1.4 257 10-293 2-288 (319)
21 KOG4658 Apoptotic ATPase [Sign 99.4 3.4E-13 7.5E-18 135.6 6.8 283 3-327 568-867 (889)
22 cd00116 LRR_RI Leucine-rich re 99.4 2.6E-13 5.6E-18 123.6 3.6 260 5-292 22-316 (319)
23 KOG0617 Ras suppressor protein 99.3 3E-14 6.6E-19 112.0 -3.3 135 4-159 54-190 (264)
24 KOG4341 F-box protein containi 99.3 2.5E-14 5.3E-19 127.0 -4.5 260 31-321 139-415 (483)
25 KOG4341 F-box protein containi 99.2 2.7E-13 5.8E-18 120.5 -4.2 287 7-322 139-441 (483)
26 PF14580 LRR_9: Leucine-rich r 99.2 4E-11 8.6E-16 97.8 5.2 131 4-152 17-150 (175)
27 KOG3207 Beta-tubulin folding c 99.2 1E-11 2.2E-16 111.2 1.8 213 26-260 117-339 (505)
28 KOG4237 Extracellular matrix p 99.1 1.3E-12 2.8E-17 115.5 -5.0 240 4-257 89-356 (498)
29 PF14580 LRR_9: Leucine-rich r 99.0 8.2E-11 1.8E-15 95.9 1.9 119 16-155 7-126 (175)
30 KOG2120 SCF ubiquitin ligase, 99.0 1.5E-11 3.2E-16 105.1 -5.3 62 222-294 311-374 (419)
31 KOG3207 Beta-tubulin folding c 98.9 3.5E-10 7.7E-15 101.5 1.2 135 4-155 144-284 (505)
32 KOG1259 Nischarin, modulator o 98.9 2.9E-10 6.2E-15 97.5 -0.1 130 7-157 285-414 (490)
33 KOG1909 Ran GTPase-activating 98.9 5.6E-10 1.2E-14 97.6 0.9 248 26-293 26-308 (382)
34 KOG0532 Leucine-rich repeat (L 98.8 7.5E-10 1.6E-14 102.5 -0.7 152 4-178 119-270 (722)
35 COG4886 Leucine-rich repeat (L 98.8 1.1E-08 2.3E-13 96.2 7.0 176 28-261 114-291 (394)
36 COG4886 Leucine-rich repeat (L 98.8 3.5E-09 7.6E-14 99.4 3.7 128 5-153 115-243 (394)
37 KOG2120 SCF ubiquitin ligase, 98.8 1.8E-10 3.8E-15 98.6 -4.8 182 58-260 186-376 (419)
38 PF13855 LRR_8: Leucine rich r 98.8 6E-09 1.3E-13 69.9 3.6 60 6-69 1-61 (61)
39 KOG0532 Leucine-rich repeat (L 98.7 4.8E-10 1E-14 103.8 -3.7 174 5-206 74-248 (722)
40 KOG1909 Ran GTPase-activating 98.7 4.3E-09 9.4E-14 92.1 0.9 242 4-260 28-311 (382)
41 KOG0531 Protein phosphatase 1, 98.6 7.1E-09 1.5E-13 97.8 -1.3 102 7-117 73-174 (414)
42 PF13855 LRR_8: Leucine rich r 98.5 8.3E-08 1.8E-12 64.3 2.8 56 30-89 1-58 (61)
43 PLN03150 hypothetical protein; 98.4 7.5E-07 1.6E-11 88.1 9.1 67 49-116 434-501 (623)
44 KOG0531 Protein phosphatase 1, 98.4 4.8E-08 1E-12 92.1 -0.3 194 28-258 70-266 (414)
45 KOG1259 Nischarin, modulator o 98.4 6.3E-08 1.4E-12 83.4 -0.5 130 55-205 282-412 (490)
46 KOG2982 Uncharacterized conser 98.2 2.6E-07 5.7E-12 79.5 -0.2 81 165-253 196-285 (418)
47 PLN03150 hypothetical protein; 98.2 4.6E-06 9.9E-11 82.6 8.0 77 8-89 420-499 (623)
48 KOG1947 Leucine rich repeat pr 98.2 4.1E-07 8.9E-12 87.6 0.5 40 284-323 402-443 (482)
49 KOG3665 ZYG-1-like serine/thre 98.1 1.7E-06 3.6E-11 85.8 4.0 136 7-153 123-261 (699)
50 PF12799 LRR_4: Leucine Rich r 98.1 4.7E-06 1E-10 51.4 3.7 37 31-71 2-38 (44)
51 PF12799 LRR_4: Leucine Rich r 98.0 5E-06 1.1E-10 51.2 3.4 41 6-51 1-41 (44)
52 KOG1859 Leucine-rich repeat pr 98.0 1.8E-07 3.9E-12 89.5 -5.3 126 32-180 166-291 (1096)
53 KOG2982 Uncharacterized conser 98.0 1.7E-06 3.7E-11 74.6 0.6 228 31-291 46-287 (418)
54 KOG1859 Leucine-rich repeat pr 98.0 1.3E-07 2.9E-12 90.3 -6.9 96 12-116 170-265 (1096)
55 PRK15386 type III secretion pr 97.9 3.1E-05 6.8E-10 71.2 7.4 135 4-178 50-187 (426)
56 KOG3665 ZYG-1-like serine/thre 97.9 1.5E-05 3.3E-10 79.0 5.3 128 4-150 146-283 (699)
57 KOG1947 Leucine rich repeat pr 97.8 2.4E-06 5.2E-11 82.3 -1.2 35 288-322 381-416 (482)
58 KOG1644 U2-associated snRNP A' 97.8 2.7E-05 5.9E-10 63.7 4.5 109 166-293 40-150 (233)
59 PRK15386 type III secretion pr 97.7 0.00018 4E-09 66.3 9.2 60 29-97 51-111 (426)
60 KOG4579 Leucine-rich repeat (L 97.7 9.2E-06 2E-10 62.2 0.4 102 10-117 31-135 (177)
61 KOG1644 U2-associated snRNP A' 97.5 9.4E-05 2E-09 60.6 4.1 82 30-117 42-125 (233)
62 KOG4579 Leucine-rich repeat (L 97.4 1.3E-05 2.8E-10 61.4 -2.2 109 29-157 26-138 (177)
63 KOG2123 Uncharacterized conser 97.4 1.4E-05 3E-10 68.5 -2.6 100 5-111 18-123 (388)
64 COG5238 RNA1 Ran GTPase-activa 97.3 0.00022 4.7E-09 61.2 4.0 198 27-234 27-252 (388)
65 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 62.3 2.0 84 26-117 39-128 (260)
66 KOG2123 Uncharacterized conser 97.1 5.6E-05 1.2E-09 64.9 -1.9 83 28-117 17-100 (388)
67 COG5238 RNA1 Ran GTPase-activa 97.1 0.00022 4.7E-09 61.2 1.5 243 53-317 26-313 (388)
68 KOG2739 Leucine-rich acidic nu 96.4 0.0023 4.9E-08 54.7 2.7 88 55-156 41-130 (260)
69 PF13306 LRR_5: Leucine rich r 96.2 0.0094 2E-07 46.1 5.2 101 4-114 10-112 (129)
70 KOG3864 Uncharacterized conser 96.2 0.00066 1.4E-08 55.8 -1.7 66 222-298 123-191 (221)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0034 7.3E-08 32.1 0.7 17 59-75 2-18 (22)
72 PF13306 LRR_5: Leucine rich r 95.2 0.048 1E-06 42.0 5.6 95 4-108 33-129 (129)
73 PF00560 LRR_1: Leucine Rich R 94.7 0.011 2.3E-07 30.2 0.3 9 32-40 2-10 (22)
74 PF13504 LRR_7: Leucine rich r 94.5 0.025 5.3E-07 26.8 1.3 14 58-71 2-15 (17)
75 KOG3864 Uncharacterized conser 94.4 0.013 2.8E-07 48.4 0.4 71 131-201 114-185 (221)
76 smart00369 LRR_TYP Leucine-ric 92.9 0.11 2.3E-06 27.6 2.2 21 6-26 2-22 (26)
77 smart00370 LRR Leucine-rich re 92.9 0.11 2.3E-06 27.6 2.2 21 6-26 2-22 (26)
78 smart00367 LRR_CC Leucine-rich 92.4 0.085 1.8E-06 28.1 1.4 17 306-322 1-17 (26)
79 KOG0473 Leucine-rich repeat pr 91.9 0.0042 9.2E-08 52.3 -6.0 90 21-116 33-122 (326)
80 smart00370 LRR Leucine-rich re 90.3 0.26 5.7E-06 26.0 2.0 17 58-74 3-19 (26)
81 smart00369 LRR_TYP Leucine-ric 90.3 0.26 5.7E-06 26.0 2.0 17 58-74 3-19 (26)
82 KOG0473 Leucine-rich repeat pr 88.4 0.018 3.8E-07 48.7 -5.2 81 4-89 40-120 (326)
83 smart00364 LRR_BAC Leucine-ric 75.1 1.9 4.1E-05 22.9 1.2 17 58-74 3-19 (26)
84 KOG4308 LRR-containing protein 74.3 0.072 1.6E-06 51.0 -7.7 185 8-206 89-304 (478)
85 PF13516 LRR_6: Leucine Rich r 71.0 4.2 9E-05 20.8 1.9 14 104-117 1-14 (24)
86 smart00365 LRR_SD22 Leucine-ri 66.5 5.4 0.00012 21.2 1.7 10 31-40 3-12 (26)
87 KOG3763 mRNA export factor TAP 53.6 5.9 0.00013 38.2 0.9 83 221-314 215-308 (585)
88 smart00368 LRR_RI Leucine rich 53.3 11 0.00024 20.2 1.6 14 6-19 2-15 (28)
89 KOG3763 mRNA export factor TAP 49.0 11 0.00024 36.4 1.9 37 4-40 216-254 (585)
90 KOG4308 LRR-containing protein 47.2 1 2.2E-05 43.4 -5.4 162 5-180 114-302 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=7.1e-22 Score=205.42 Aligned_cols=224 Identities=17% Similarity=0.221 Sum_probs=121.4
Q ss_pred CCCCcCEEEccCCCCC-ccchhhhhcCCcccEEECCCCCCCCCcC-ccCccccccccCCEEeccCCCCc-cCchhhhcCc
Q 040318 4 RYSNIPSILELSSNNK-VFEPSWFLSRASWTCLDNGPSRIKNSLT-ELPSGISSLVSLQHLDVSYTDIR-GLPHELTALL 80 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~-~l~~~i~~l~ 80 (366)
.+++|+.|++++|.+. .+|..++..+++|++|++++| .+. .+|. +.+++|++|++++|.+. .+|..++.++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n----~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN----NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC----ccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence 4667777777777665 466665556777777777777 333 2342 34666777777777665 5566677777
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccc
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNF 160 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 160 (366)
+|++|++++|.....+|.. +.++++|++|++.+|.+ ....+..+..+++|+.|+++++..... +
T Consensus 165 ~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l-------------~~~~p~~l~~l~~L~~L~L~~n~l~~~--~ 228 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQL-------------VGQIPRELGQMKSLKWIYLGYNNLSGE--I 228 (968)
T ss_pred CCCEEECccCcccccCChh-hhhCcCCCeeeccCCCC-------------cCcCChHHcCcCCccEEECcCCccCCc--C
Confidence 7777777773333345554 66777777777777654 122344556666666666665544321 1
Q ss_pred cccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCc-c
Q 040318 161 LKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVK-D 239 (366)
Q Consensus 161 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~-~ 239 (366)
......+.+|++|++.++......+..+..+++|+.|++.++.+.......+ ..+++|+.|++++| .++ .
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--------~~l~~L~~L~Ls~n-~l~~~ 299 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI--------FSLQKLISLDLSDN-SLSGE 299 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH--------hhccCcCEEECcCC-eeccC
Confidence 1111223456666666655411122245556666666666554432111111 23455555555555 222 2
Q ss_pred cc-cccCCCCccEEEEEccC
Q 040318 240 LT-WLAFAPNLKIIVIMHCD 258 (366)
Q Consensus 240 l~-~l~~l~~L~~L~L~~c~ 258 (366)
++ .+..+++|++|++++|.
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred CChhHcCCCCCcEEECCCCc
Confidence 22 23345555555555444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=9.5e-22 Score=204.49 Aligned_cols=285 Identities=17% Similarity=0.139 Sum_probs=138.7
Q ss_pred CCCCcCEEEccCCCCCc-cchhhhhcCCcccEEECCCCCCCCCcC-ccCccccccccCCEEeccCCCCc-cCchhhhcCc
Q 040318 4 RYSNIPSILELSSNNKV-FEPSWFLSRASWTCLDNGPSRIKNSLT-ELPSGISSLVSLQHLDVSYTDIR-GLPHELTALL 80 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~-~l~~~i~~l~ 80 (366)
.+++|++|++++|++.. +|. ..+++|++|++++| .+. .+|..++.+++|++|++++|.+. .+|..+.+++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n----~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNN----MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred cCCCCCEEECcCCccccccCc---cccCCCCEEECcCC----cccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 45667777777666653 332 34566666666666 333 34555666666666666666554 5555666666
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc-cc
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV-RN 159 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~ 159 (366)
+|++|++++|.....+|.+ +.++++|++|++.+|.+. ...+..+..+++|+.|+++++..... +.
T Consensus 189 ~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~-------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS-------------GEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred CCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC-------------CcCChhHhcCCCCCEEECcCceeccccCh
Confidence 6666666663333344544 566666666666665441 12233344445555555544332211 00
Q ss_pred -c--------------------cccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccc
Q 040318 160 -F--------------------LKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKV 218 (366)
Q Consensus 160 -~--------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~ 218 (366)
+ ......+.+|+.|+++++......+..+..+++|+.|++.+|.+.......+
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~------ 328 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL------ 328 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH------
Confidence 0 0001112334444444443311111133444455555554444332111111
Q ss_pred cccCCCCCcEEeEecCCCCc-ccc-cccCCCCccEEEEEccCCcccccccc-ccc----------cc-cccccccccccc
Q 040318 219 LQCGFRSLHLASIAFCSRVK-DLT-WLAFAPNLKIIVIMHCDDLEEIISVE-KLN----------QL-SDIMGELNFFAK 284 (366)
Q Consensus 219 p~~~~~~L~~L~l~~~~~l~-~l~-~l~~l~~L~~L~L~~c~~~~~~~~~~-~~~----------~~-~~~~~~~~~~~~ 284 (366)
..+++|+.|++.+|. ++ .++ .++.+++|+.|++++|.....+...- ... .+ ...+..+..+++
T Consensus 329 --~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 329 --TSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred --hcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 346667777776663 33 233 34566667777776665332211100 000 00 011223445666
Q ss_pred ccccccccccccccccCCCcCCCCccEEeccCCC
Q 040318 285 LELLDLYHAENLKSIYQGALPLPQLKEIRVTQCP 318 (366)
Q Consensus 285 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 318 (366)
|+.|+++++.-...++.....+++|+.|+++++.
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 7777776664443444444556777777777654
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=6.1e-21 Score=199.61 Aligned_cols=285 Identities=17% Similarity=0.215 Sum_probs=155.4
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCC-CCccCchhhhcCccCC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYT-DIRGLPHELTALLNLR 83 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~-~i~~l~~~i~~l~~L~ 83 (366)
..+|+.|++.++.+..++.+ +..+++|++|+++++. .++.+|. +..+++|+.|++++| .+..+|..++++++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~---~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSK---NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCccccccccc-cccCCCCCEEECCCCC---CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 34455555555555554444 4455555555555543 3444443 444555555555555 3445555555555555
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
.|++++|+.+..+|.. + ++++|+.|++.+|... ...+. ...+|+.|+++++....++...
T Consensus 685 ~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L-------------~~~p~---~~~nL~~L~L~~n~i~~lP~~~-- 744 (1153)
T PLN03210 685 DLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRL-------------KSFPD---ISTNISWLDLDETAIEEFPSNL-- 744 (1153)
T ss_pred EEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCc-------------ccccc---ccCCcCeeecCCCccccccccc--
Confidence 5555555555555543 2 4555555555555320 00010 1234555555544433333211
Q ss_pred ccccccccEEEEeccCCCCc-------CccchhhhcccCceEeccc-ccceeeccccCccccccccCCCCCcEEeEecCC
Q 040318 164 PKLLRITQALSISDCEIPLL-------NVSHLAYMEHLKDLVIDNS-NLEELKTDCTGEVQKVLQCGFRSLHLASIAFCS 235 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~-------~~~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~ 235 (366)
.+++|+.|.+.++..... .......+++|+.|++.++ .+..++.. + ..+++|+.|++.+|.
T Consensus 745 --~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i--------~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 745 --RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-I--------QNLHKLEHLEIENCI 813 (1153)
T ss_pred --cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-h--------hCCCCCCEEECCCCC
Confidence 123344444443322000 0001112345666666553 22222221 1 357778888887777
Q ss_pred CCcccccccCCCCccEEEEEccCCccccccccc--------ccccccccccccccccccccccccccccccccCCCcCCC
Q 040318 236 RVKDLTWLAFAPNLKIIVIMHCDDLEEIISVEK--------LNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLP 307 (366)
Q Consensus 236 ~l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~--------~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 307 (366)
.++.+|....+++|+.|++++|..+........ ...++.++..+..+++|+.|++++|..++.++.....++
T Consensus 814 ~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 814 NLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred CcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 777776555677778888877766654321100 011233444677889999999999999999888888899
Q ss_pred CccEEeccCCCCCCCCCC
Q 040318 308 QLKEIRVTQCPKLKTLPL 325 (366)
Q Consensus 308 ~L~~L~l~~c~~l~~lp~ 325 (366)
+|+.+++++|++|+.++.
T Consensus 894 ~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 894 HLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCeeecCCCcccccccC
Confidence 999999999999986643
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.3e-22 Score=185.53 Aligned_cols=282 Identities=15% Similarity=0.139 Sum_probs=168.2
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~ 83 (366)
.+|+.|+|.+|-|..+.....+.++.|++||+|.| .+.++|. .+..-.++++|+|++|.|+.+.. .+..+.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN----~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN----LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhc----hhhcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 35666666666666665555667777777888877 6777764 34555778888888887775532 455666788
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
.|.|++ +.++.+|...+.++++|+.|++.+|.+.-. -.-.+..++.|+.+.+..+.......=.
T Consensus 201 tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~iriv-------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~-- 264 (873)
T KOG4194|consen 201 TLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIV-------------EGLTFQGLPSLQNLKLQRNDISKLDDGA-- 264 (873)
T ss_pred eeeccc-CcccccCHHHhhhcchhhhhhccccceeee-------------hhhhhcCchhhhhhhhhhcCcccccCcc--
Confidence 888888 788888877677788888888888866211 1223455666666666655443322111
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc-
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW- 242 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~- 242 (366)
.-.+..+++|++..++........+.+++.|+.|+++.|.+..+..+.+ +.+++|+.|+++++ .++.++.
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--------sftqkL~~LdLs~N-~i~~l~~~ 335 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--------SFTQKLKELDLSSN-RITRLDEG 335 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--------hhcccceeEecccc-ccccCChh
Confidence 0123446777776665522333366677777777777777777776655 35677777777777 5666542
Q ss_pred -ccCCCCccEEEEEccCCccccccccc----------------ccccccccccccccccccccccccccccccccCC-Cc
Q 040318 243 -LAFAPNLKIIVIMHCDDLEEIISVEK----------------LNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG-AL 304 (366)
Q Consensus 243 -l~~l~~L~~L~L~~c~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~ 304 (366)
+..+..|+.|.|+++.. +.+..-+. ...+++....+.++++|++|.+.+ .+++.++.. ..
T Consensus 336 sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfs 413 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFS 413 (873)
T ss_pred HHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhc
Confidence 33344444444444331 11100000 000112222566677777777766 356666543 33
Q ss_pred CCCCccEEeccCCC
Q 040318 305 PLPQLKEIRVTQCP 318 (366)
Q Consensus 305 ~~~~L~~L~l~~c~ 318 (366)
+++.|++|++.+.+
T Consensus 414 gl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 414 GLEALEHLDLGDNA 427 (873)
T ss_pred cCcccceecCCCCc
Confidence 47788888887643
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.85 E-value=9.3e-22 Score=196.72 Aligned_cols=336 Identities=31% Similarity=0.442 Sum_probs=247.4
Q ss_pred CCCCCCCcCEEEccCCC--CCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhc
Q 040318 1 DNIRYSNIPSILELSSN--NKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTA 78 (366)
Q Consensus 1 ~~~~~~~L~~L~l~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~ 78 (366)
+.++++.|++|.++++. +..++..+|..+|.|++||+++|. .+.++|..++.+.+||||+++++.+..+|..+++
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence 35688899999999987 677888889999999999999998 8899999999999999999999999999999999
Q ss_pred CccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccc
Q 040318 79 LLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVR 158 (366)
Q Consensus 79 l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 158 (366)
+..|.+|++..+..+..++. +...|++|++|.+...... ........+..+.+|+.+.+.........
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~-----------~~~~~l~el~~Le~L~~ls~~~~s~~~~e 684 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS-----------NDKLLLKELENLEHLENLSITISSVLLLE 684 (889)
T ss_pred HHhhheeccccccccccccc-hhhhcccccEEEeeccccc-----------cchhhHHhhhcccchhhheeecchhHhHh
Confidence 99999999998666666654 3667999999999876521 23455666778888888888654442223
Q ss_pred cccccccccccccEEEEeccCCCCcCcc-chhhhcccCceEecccccceeeccccCcccccccc-CCCCCcEEeEecCCC
Q 040318 159 NFLKFPKLLRITQALSISDCEIPLLNVS-HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQC-GFRSLHLASIAFCSR 236 (366)
Q Consensus 159 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~-~~~~L~~L~l~~~~~ 236 (366)
.+.....+....+.+.+.++.. .... .+..+++|+.|.+...++.+...+..... ... .|+++..+.+.+|..
T Consensus 685 ~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~---~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEIVIEWEESL---IVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred hhhhhHHHHHHhHhhhhccccc--ceeecccccccCcceEEEEcCCCchhhccccccc---chhhhHHHHHHHHhhcccc
Confidence 3334434333344555433332 2222 77888999999998866654433222100 002 277888999999988
Q ss_pred CcccccccCCCCccEEEEEccCCccccccccccccccccccccccccccccc-ccccccccccccCCCcCCCCccEEecc
Q 040318 237 VKDLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELL-DLYHAENLKSIYQGALPLPQLKEIRVT 315 (366)
Q Consensus 237 l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~l~ 315 (366)
..++.+....|+|+.|.+.+|..++++++..+.-. ........|.++..+ .+.+...+..+......++.|+++.+.
T Consensus 760 ~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve 837 (889)
T KOG4658|consen 760 LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVE 837 (889)
T ss_pred ccccchhhccCcccEEEEecccccccCCCHHHHhh--hcccEEecccccccceeeecCCCCceeEecccCccchhheehh
Confidence 88888888889999999999999999987444322 111123345566666 455666666666666667789999999
Q ss_pred CCCCCCCCCCCCCCCC-c--ceeEEEcchhhhcccccCcccccccc
Q 040318 316 QCPKLKTLPLNSSSTK-L--RNIVISGGKDWWEELQWEDQATQNAF 358 (366)
Q Consensus 316 ~c~~l~~lp~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (366)
.||++..+|....... . +.....-++.|-+.++|.+++++..|
T Consensus 838 ~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 838 ECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 9999999999865554 2 34444456668889999999998776
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.1e-19 Score=190.28 Aligned_cols=286 Identities=19% Similarity=0.206 Sum_probs=180.0
Q ss_pred CCCCcCEEEccCCCC------C-ccchhhhhcC-CcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchh
Q 040318 4 RYSNIPSILELSSNN------K-VFEPSWFLSR-ASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHE 75 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~------~-~l~~~~~~~~-~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~ 75 (366)
.|++|+.|.+..+.. . ++|.. +..+ +.|+.|++.++ .++.+|..+ ...+|++|+++++.+..+|..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~----~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY----PLRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC----CCCCCCCcC-CccCCcEEECcCccccccccc
Confidence 467777777754321 1 24555 4444 35777777777 667777655 456777777777777777777
Q ss_pred hhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccc-
Q 040318 76 LTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSS- 154 (366)
Q Consensus 76 i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~- 154 (366)
+..+++|++|++++|+.+..+|. +..+++|+.|++.+|.. ....+..+..+++|+.|+++++..
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~-------------L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS-------------LVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC-------------ccccchhhhccCCCCEEeCCCCCCc
Confidence 77777777777777666666665 66777777777777643 223455566677777777765432
Q ss_pred cccccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeecccc------------------Cccc
Q 040318 155 RGVRNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCT------------------GEVQ 216 (366)
Q Consensus 155 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~------------------~~~~ 216 (366)
..++... .+.+|+.|.+.+|.. ..... ....+|+.|++.++.++.++.... +...
T Consensus 695 ~~Lp~~i----~l~sL~~L~Lsgc~~--L~~~p-~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 695 EILPTGI----NLKSLYRLNLSGCSR--LKSFP-DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CccCCcC----CCCCCCEEeCCCCCC--ccccc-cccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 2222211 234566777766654 22221 112456666666555444332100 0000
Q ss_pred ---cccccCCCCCcEEeEecCCCCcccc-cccCCCCccEEEEEccCCccccccccccccccccccccccccccccccccc
Q 040318 217 ---KVLQCGFRSLHLASIAFCSRVKDLT-WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYH 292 (366)
Q Consensus 217 ---~~p~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (366)
......+++|+.|++++|+.+..+| .++++++|+.|+|++|..++.+.. . ..+++|+.|++++
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~-~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------G-INLESLESLDLSG 834 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------C-CCccccCEEECCC
Confidence 0001235789999999998787776 577899999999999988876542 1 2466777777776
Q ss_pred ccccccc--------------------cCCCcCCCCccEEeccCCCCCCCCCCCCCCC
Q 040318 293 AENLKSI--------------------YQGALPLPQLKEIRVTQCPKLKTLPLNSSST 330 (366)
Q Consensus 293 ~~~l~~~--------------------~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~ 330 (366)
|..+..+ +.....+++|+.|++.+|++++.+|..+..+
T Consensus 835 c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 835 CSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred CCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 6555433 3334468899999999999999999876665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=3.4e-21 Score=177.86 Aligned_cols=303 Identities=19% Similarity=0.244 Sum_probs=175.3
Q ss_pred CCCCcCEEEccCCCCCc--cchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchh-hhcCc
Q 040318 4 RYSNIPSILELSSNNKV--FEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHE-LTALL 80 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~--l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~ 80 (366)
.+|.||.+.++.|++.. +|.. +-.+..|.+||+|.| .+.+.|..+...+++-.|+|++|+|..+|.. +-+++
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN----qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN----QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred cchhhHHHhhhccccccCCCCch-hcccccceeeecchh----hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 45566666666665542 5555 334666666666666 5566666666666666666666666665543 24555
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccc
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNF 160 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 160 (366)
.|-.|||+. +.+..+|+. +.++.+|+.|++++|++ .......+..+..|+.|.+++...+ ...+
T Consensus 151 DLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL-------------~hfQLrQLPsmtsL~vLhms~TqRT-l~N~ 214 (1255)
T KOG0444|consen 151 DLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPL-------------NHFQLRQLPSMTSLSVLHMSNTQRT-LDNI 214 (1255)
T ss_pred hHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChh-------------hHHHHhcCccchhhhhhhcccccch-hhcC
Confidence 566666666 566666665 66666666666666654 2233445556666666666654332 2233
Q ss_pred cccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccc
Q 040318 161 LKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDL 240 (366)
Q Consensus 161 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l 240 (366)
......+.||..++++.++- ...+..+..+++|+.|++++|+++++.... ..-.+|+.|+++.+ .++.+
T Consensus 215 Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~~---------~~W~~lEtLNlSrN-QLt~L 283 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITELNMTE---------GEWENLETLNLSRN-QLTVL 283 (1255)
T ss_pred CCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCceeeeeccH---------HHHhhhhhhccccc-hhccc
Confidence 33334455677777766554 111126677788888888888887765411 12355666666666 56665
Q ss_pred cc-ccCCCCccEEEEEccCCccccccc--c----------cccccccccccccccccccccccccccccccccCCCcCCC
Q 040318 241 TW-LAFAPNLKIIVIMHCDDLEEIISV--E----------KLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLP 307 (366)
Q Consensus 241 ~~-l~~l~~L~~L~L~~c~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 307 (366)
|. +..+++|++|.+.+++.--+.++. . ....++-++..+..|++|+.|.|++ ..+-.++....-++
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLP 362 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcC
Confidence 52 345666666666555433222220 0 0011222334666788888888865 45556666677788
Q ss_pred CccEEeccCCCCCCCCCCCCCCCCcceeEEEcc
Q 040318 308 QLKEIRVTQCPKLKTLPLNSSSTKLRNIVISGG 340 (366)
Q Consensus 308 ~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~~~ 340 (366)
.|+.|++...|+|. +|......+..+.+.+.+
T Consensus 363 ~l~vLDlreNpnLV-MPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLV-MPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CcceeeccCCcCcc-CCCCcchhhhcceeeecc
Confidence 89999998888887 555555443445554444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=3.2e-21 Score=178.04 Aligned_cols=301 Identities=16% Similarity=0.172 Sum_probs=220.6
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.|.+|+.|.+.+|++..+... .+.++.|+.+.+..|.+ .-..+|..++++..|..|||++|++++.|..+.+..++.
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~L--KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNL--KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcccc--ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 456677778888887776665 67788888888888854 334589889999999999999999999999999999999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc--cccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV--RNFL 161 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~ 161 (366)
+|+|++ +++..+|..++-+++.|-.|+++.|++ ...+..+..+.+|++|.++++....+ ..+.
T Consensus 130 VLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrL--------------e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP 194 (1255)
T KOG0444|consen 130 VLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRL--------------EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP 194 (1255)
T ss_pred EEEccc-CccccCCchHHHhhHhHhhhccccchh--------------hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc
Confidence 999999 889999988888999999999999977 56677788899999999998876543 2232
Q ss_pred ccccccccccEEEEeccCCCCcCcc--chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcc
Q 040318 162 KFPKLLRITQALSISDCEIPLLNVS--HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKD 239 (366)
Q Consensus 162 ~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~ 239 (366)
. +.+|+.|.+++-+. +...+ ++..+.+|..++++.|.+..++...+ .+++|+.|+++++ .++.
T Consensus 195 s----mtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly---------~l~~LrrLNLS~N-~ite 259 (1255)
T KOG0444|consen 195 S----MTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY---------KLRNLRRLNLSGN-KITE 259 (1255)
T ss_pred c----chhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcchHHHh---------hhhhhheeccCcC-ceee
Confidence 2 23367777776554 22222 77888999999999988877765444 6789999999999 7888
Q ss_pred cc-cccCCCCccEEEEEccCCcccccc------------cccccccccccccccccccccccccccccccccccCCCcCC
Q 040318 240 LT-WLAFAPNLKIIVIMHCDDLEEIIS------------VEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPL 306 (366)
Q Consensus 240 l~-~l~~l~~L~~L~L~~c~~~~~~~~------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 306 (366)
+. ..+.-.+|+.|+++.++...-... ..+--.++++++.++.+..|+.+...+ ..++-.+.+...|
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC 338 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRC 338 (1255)
T ss_pred eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhh
Confidence 65 445667899999998764321110 000011234444555555555555544 3455556667779
Q ss_pred CCccEEeccCCCCCCCCCCCCCCCCcceeEEEcc
Q 040318 307 PQLKEIRVTQCPKLKTLPLNSSSTKLRNIVISGG 340 (366)
Q Consensus 307 ~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~~~ 340 (366)
+.|++|.+++ .+|-++|..+-.+ +.+++++.-
T Consensus 339 ~kL~kL~L~~-NrLiTLPeaIHlL-~~l~vLDlr 370 (1255)
T KOG0444|consen 339 VKLQKLKLDH-NRLITLPEAIHLL-PDLKVLDLR 370 (1255)
T ss_pred HHHHHhcccc-cceeechhhhhhc-CCcceeecc
Confidence 9999999964 6777799987766 777777643
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=3e-20 Score=170.27 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCc-hhhhcCccCCE
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLP-HELTALLNLRY 84 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~~L~~ 84 (366)
+..+.|++++|.+.++....|.++++|+.+++.+| .++.+|.......+|+.|+|.+|.|+.+. +.++.++.|+.
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N----~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN----ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc----hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 34566777777777776666777777777777777 67777775444566777777777766443 35666677777
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
|||+. +.+.+++..-+..-.++++|++.+|.+
T Consensus 154 lDLSr-N~is~i~~~sfp~~~ni~~L~La~N~I 185 (873)
T KOG4194|consen 154 LDLSR-NLISEIPKPSFPAKVNIKKLNLASNRI 185 (873)
T ss_pred hhhhh-chhhcccCCCCCCCCCceEEeeccccc
Confidence 77777 666666543244445677777777665
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=8.9e-18 Score=147.90 Aligned_cols=301 Identities=17% Similarity=0.166 Sum_probs=170.5
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcccc-ccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGIS-SLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
+..|..|+++.|.+..+|+ |..|..|..|+++.| .++.+|.... ++.++..||++.|+++++|..+..+.+|.
T Consensus 205 l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N----~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFLPE--FPGCSLLKELHVGEN----QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhhHHHHhhhcccccCCC--CCccHHHHHHHhccc----HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 3455566777777777774 777788888888877 7777777654 68888888888888888888888888888
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEE-ecccc--ccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFS-LYSSR--GVRNF 160 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~--~~~~~ 160 (366)
+||+++ +.++.+|.+ ++++ .|+.|.+.||++.+... ..++..+....+.+.....=..++-+ +...+ +.+.+
T Consensus 279 rLDlSN-N~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr--~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 279 RLDLSN-NDISSLPYS-LGNL-HLKFLALEGNPLRTIRR--EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhcccC-CccccCCcc-cccc-eeeehhhcCCchHHHHH--HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 888888 778888876 7888 78888888887654320 00001111112211110000000000 00000 00011
Q ss_pred cccc-cccccccEEEEeccCCCCcCccchh--hhcccCceEecccccceeecccc-------------Cccccccc--cC
Q 040318 161 LKFP-KLLRITQALSISDCEIPLLNVSHLA--YMEHLKDLVIDNSNLEELKTDCT-------------GEVQKVLQ--CG 222 (366)
Q Consensus 161 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~l~~~~~-------------~~~~~~p~--~~ 222 (366)
.... ...-+.+.|.+++-+...+....+. .-.-....++++|++.+++.+.. ..-+|+|. ..
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~ 433 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQ 433 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHh
Confidence 0000 0111233444433332111111111 11124445555555555443211 11223333 67
Q ss_pred CCCCcEEeEecCCCCcccc-cccCCCCccEEEEEccCCcccccc----------cccccccccccc-ccccccccccccc
Q 040318 223 FRSLHLASIAFCSRVKDLT-WLAFAPNLKIIVIMHCDDLEEIIS----------VEKLNQLSDIMG-ELNFFAKLELLDL 290 (366)
Q Consensus 223 ~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~L~~c~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~L~~L~l 290 (366)
+++|..|+++++ -+.++| ..+.+..|+.|+|+.++.-+-.-. ......+..+.. .+.++.+|.+|++
T Consensus 434 l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 434 LQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 888999999888 577776 355777788899887753321100 000011222222 3678889999999
Q ss_pred ccccccccccCCCcCCCCccEEeccCCC
Q 040318 291 YHAENLKSIYQGALPLPQLKEIRVTQCP 318 (366)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 318 (366)
.+ .++..++...+.|.+|++|++++.|
T Consensus 513 ~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 513 QN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred CC-CchhhCChhhccccceeEEEecCCc
Confidence 66 5788888888999999999999875
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=6.4e-18 Score=148.79 Aligned_cols=234 Identities=22% Similarity=0.279 Sum_probs=133.4
Q ss_pred CCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccC
Q 040318 3 IRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNL 82 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L 82 (366)
-++..+++|++++|.+..+|+. ++.+..++.|+++.+ .+..+|..++.+..|+.|+.++|.+.++|..++.+..|
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n----~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN----KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDL 139 (565)
T ss_pred hcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc----hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhh
Confidence 3566777888888888888777 677778888888888 77788887888888888888888888888888888888
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCcccccc--------c-cccchHHHHHhhcCCCCcceEEEEecc
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGS--------V-LSEDAEPLMKELLCLKLLNLISFSLYS 153 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------~-~~~~~~~~~~~l~~l~~L~~L~l~~~~ 153 (366)
..++..+ +++..+|.+ +.++.+|..+++.++...+.+.-.. + -...-...+..++.+.+|+.|.+..+.
T Consensus 140 ~dl~~~~-N~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 140 EDLDATN-NQISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhhhccc-cccccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc
Confidence 8887777 777777776 7777777777777776532210000 0 000001122233333333333333333
Q ss_pred ccccccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEec
Q 040318 154 SRGVRNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAF 233 (366)
Q Consensus 154 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~ 233 (366)
....|.+.. |..|.+|++...............++++.+|++..|++++++.+.. .+++|++|++++
T Consensus 218 i~~lPef~g----cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c---------lLrsL~rLDlSN 284 (565)
T KOG0472|consen 218 IRFLPEFPG----CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC---------LLRSLERLDLSN 284 (565)
T ss_pred cccCCCCCc----cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH---------HhhhhhhhcccC
Confidence 333332221 2224444444333311111133344555555555555555544222 345555566655
Q ss_pred CCCCcccc-cccCCCCccEEEEEccC
Q 040318 234 CSRVKDLT-WLAFAPNLKIIVIMHCD 258 (366)
Q Consensus 234 ~~~l~~l~-~l~~l~~L~~L~L~~c~ 258 (366)
+ .++.+| .++++ +|+.|.+.+++
T Consensus 285 N-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 285 N-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred C-ccccCCcccccc-eeeehhhcCCc
Confidence 5 455554 34455 55555555554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=3e-14 Score=140.43 Aligned_cols=240 Identities=21% Similarity=0.128 Sum_probs=126.9
Q ss_pred cCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeec
Q 040318 8 IPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNL 87 (366)
Q Consensus 8 L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L 87 (366)
-..|++++++++.+|..+ . ++|+.|++++| .++.+|.. .++|++|++++|+++.+|.. .++|+.|++
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N----~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-P--AHITTLVIPDN----NLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCCcCCcch-h--cCCCEEEccCC----cCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeec
Confidence 456777777777777652 2 36777777777 66666642 46777777777777766642 345666666
Q ss_pred cccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc----
Q 040318 88 ERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF---- 163 (366)
Q Consensus 88 ~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---- 163 (366)
++ +.+..+|.. ..+|+.|++.+|.+... +. ..++|+.|+++++....++.+...
T Consensus 270 s~-N~L~~Lp~l----p~~L~~L~Ls~N~Lt~L--------------P~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L 327 (788)
T PRK15387 270 FS-NPLTHLPAL----PSGLCKLWIFGNQLTSL--------------PV---LPPGLQELSVSDNQLASLPALPSELCKL 327 (788)
T ss_pred cC-Cchhhhhhc----hhhcCEEECcCCccccc--------------cc---cccccceeECCCCccccCCCCccccccc
Confidence 66 445554431 13455566655544211 10 124455555555444433321100
Q ss_pred ----------ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEec
Q 040318 164 ----------PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAF 233 (366)
Q Consensus 164 ----------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~ 233 (366)
.....+|+.|+++++...... . ..++|+.|++++|.+..++. .+.+|+.|++++
T Consensus 328 ~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP--~--lp~~L~~L~Ls~N~L~~LP~------------l~~~L~~LdLs~ 391 (788)
T PRK15387 328 WAYNNQLTSLPTLPSGLQELSVSDNQLASLP--T--LPSELYKLWAYNNRLTSLPA------------LPSGLKELIVSG 391 (788)
T ss_pred ccccCccccccccccccceEecCCCccCCCC--C--CCcccceehhhccccccCcc------------cccccceEEecC
Confidence 001123444444443331111 0 01234444444444433221 234677777777
Q ss_pred CCCCcccccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEe
Q 040318 234 CSRVKDLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIR 313 (366)
Q Consensus 234 ~~~l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 313 (366)
| .++.++.. .++|+.|++++|... .+. . .+.+|+.|+++++ .++.++.....+++|+.|+
T Consensus 392 N-~Lt~LP~l--~s~L~~LdLS~N~Ls-sIP-------------~--l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 392 N-RLTSLPVL--PSELKELMVSGNRLT-SLP-------------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVN 451 (788)
T ss_pred C-cccCCCCc--ccCCCEEEccCCcCC-CCC-------------c--chhhhhhhhhccC-cccccChHHhhccCCCeEE
Confidence 7 56655532 356777777776532 221 1 1346777777763 4556665556677888888
Q ss_pred ccCCC
Q 040318 314 VTQCP 318 (366)
Q Consensus 314 l~~c~ 318 (366)
+++++
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 87764
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=5.7e-14 Score=138.50 Aligned_cols=240 Identities=20% Similarity=0.136 Sum_probs=149.9
Q ss_pred CcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCcE
Q 040318 30 ASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEV 109 (366)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~ 109 (366)
..-..|+++++ .++.+|..+. .+|+.|++.+|+++.+|.. .++|++|++++ +.+..+|.. .++|+.
T Consensus 201 ~~~~~LdLs~~----~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~-N~LtsLP~l----p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGES----GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSG-NQLTSLPVL----PPGLLE 266 (788)
T ss_pred CCCcEEEcCCC----CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecC-CccCcccCc----ccccce
Confidence 45678999999 7889998775 5899999999999998853 57999999999 788888752 468999
Q ss_pred EEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCccchh
Q 040318 110 LRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSHLA 189 (366)
Q Consensus 110 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 189 (366)
|++.+|.+. ..+. ...+|+.|.++++....++. .+++|+.|+++++.......
T Consensus 267 L~Ls~N~L~--------------~Lp~---lp~~L~~L~Ls~N~Lt~LP~------~p~~L~~LdLS~N~L~~Lp~---- 319 (788)
T PRK15387 267 LSIFSNPLT--------------HLPA---LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASLPA---- 319 (788)
T ss_pred eeccCCchh--------------hhhh---chhhcCEEECcCCccccccc------cccccceeECCCCccccCCC----
Confidence 999998761 2222 22678889998887776654 23568999998876522211
Q ss_pred hhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccccc------------------CCCCccE
Q 040318 190 YMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLA------------------FAPNLKI 251 (366)
Q Consensus 190 ~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~------------------~l~~L~~ 251 (366)
...+|+.|.+.+|.+..++. ...+|+.|++++| .++.+|.+. ..++|+.
T Consensus 320 lp~~L~~L~Ls~N~L~~LP~------------lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~ 386 (788)
T PRK15387 320 LPSELCKLWAYNNQLTSLPT------------LPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKE 386 (788)
T ss_pred CcccccccccccCccccccc------------cccccceEecCCC-ccCCCCCCCcccceehhhccccccCcccccccce
Confidence 12346666666666654331 1234555555555 444444221 1234455
Q ss_pred EEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCCCCCCCCCCCCCCCC
Q 040318 252 IVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCPKLKTLPLNSSSTK 331 (366)
Q Consensus 252 L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~ 331 (366)
|++++|... .+. ...++|+.|+++++ .++.++. ...+|+.|+++++ +++.+|..+..+
T Consensus 387 LdLs~N~Lt-~LP---------------~l~s~L~~LdLS~N-~LssIP~---l~~~L~~L~Ls~N-qLt~LP~sl~~L- 444 (788)
T PRK15387 387 LIVSGNRLT-SLP---------------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL- 444 (788)
T ss_pred EEecCCccc-CCC---------------CcccCCCEEEccCC-cCCCCCc---chhhhhhhhhccC-cccccChHHhhc-
Confidence 555444321 111 11346777777664 3444432 1336777777764 577777765555
Q ss_pred cceeEEEcchhhhc
Q 040318 332 LRNIVISGGKDWWE 345 (366)
Q Consensus 332 ~~~~~~~~~~~~~~ 345 (366)
..+..++...+-++
T Consensus 445 ~~L~~LdLs~N~Ls 458 (788)
T PRK15387 445 SSETTVNLEGNPLS 458 (788)
T ss_pred cCCCeEECCCCCCC
Confidence 55666665554433
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=2.9e-16 Score=151.35 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=65.4
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEe
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYL 85 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L 85 (366)
+.++.|...+|.+..+... ..-.+|++++++.+ .+..+|..++.+.+|+.+++.+|+++.+|..+....+|+.|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n----~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHN----NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSL 292 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchh----hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence 3444444444444432221 22346677777777 66666666666777777777777777676666667777777
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADST 120 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~ 120 (366)
++.. +.+..+|.. ...++.|++|++..|.+...
T Consensus 293 ~~~~-nel~yip~~-le~~~sL~tLdL~~N~L~~l 325 (1081)
T KOG0618|consen 293 SAAY-NELEYIPPF-LEGLKSLRTLDLQSNNLPSL 325 (1081)
T ss_pred Hhhh-hhhhhCCCc-ccccceeeeeeehhcccccc
Confidence 6666 566666664 55577777777777766443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=8.9e-14 Score=137.73 Aligned_cols=244 Identities=16% Similarity=0.157 Sum_probs=144.7
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEee
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLN 86 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~ 86 (366)
+.+.|.+.++.++.+|..+ .+.|+.|++++| .++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N----~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI---PEQITTLILDNN----ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCcCCccc---ccCCcEEEecCC----CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEE
Confidence 4567777777777777652 356788888888 6677776543 578888888887777776543 4678888
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKL 166 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 166 (366)
+++ +.+..+|.. +. .+|+.|++++|.+... +..+. ++|+.|+++++....++.. .
T Consensus 248 Ls~-N~L~~LP~~-l~--s~L~~L~Ls~N~L~~L--------------P~~l~--~sL~~L~Ls~N~Lt~LP~~-----l 302 (754)
T PRK15370 248 LSI-NRITELPER-LP--SALQSLDLFHNKISCL--------------PENLP--EELRYLSVYDNSIRTLPAH-----L 302 (754)
T ss_pred CcC-CccCcCChh-Hh--CCCCEEECcCCccCcc--------------ccccC--CCCcEEECCCCccccCccc-----c
Confidence 877 566777765 32 4678888877765221 22221 4677777777666554421 1
Q ss_pred cccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccCC
Q 040318 167 LRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAFA 246 (366)
Q Consensus 167 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~l 246 (366)
..+|+.|++.++... .+.....++|+.|++.+|.++.++. ..+++|+.|++++| .++.++. .-.
T Consensus 303 p~sL~~L~Ls~N~Lt---~LP~~l~~sL~~L~Ls~N~Lt~LP~-----------~l~~sL~~L~Ls~N-~L~~LP~-~lp 366 (754)
T PRK15370 303 PSGITHLNVQSNSLT---ALPETLPPGLKTLEAGENALTSLPA-----------SLPPELQVLDVSKN-QITVLPE-TLP 366 (754)
T ss_pred hhhHHHHHhcCCccc---cCCccccccceeccccCCccccCCh-----------hhcCcccEEECCCC-CCCcCCh-hhc
Confidence 234667777665541 1211123567777777776655432 23467777877777 5665542 113
Q ss_pred CCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCC----CcCCCCccEEeccCCC
Q 040318 247 PNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG----ALPLPQLKEIRVTQCP 318 (366)
Q Consensus 247 ~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~~L~~L~l~~c~ 318 (366)
++|+.|+|++|... .+.. .+ .+.|+.|+++++ .+..++.. ...++.+..+++.+.+
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~------------~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPE------------NL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCCCcCC-CCCH------------hH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 57777777776532 2221 11 135667777664 33333322 1124566666666544
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=4.7e-16 Score=149.91 Aligned_cols=246 Identities=20% Similarity=0.242 Sum_probs=170.5
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
-.+|++++++.+.+..+| +++..+.+|+.++..+| .+..+|..+.....|++|.+..|.+..+|.....+..|++
T Consensus 240 p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N----~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN----RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cccceeeecchhhhhcch-HHHHhcccceEecccch----hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence 357899999999999999 66999999999999999 8899999999999999999999999999999999999999
Q ss_pred eeccccccCCCcChhhhcCCCC-CcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccc--ccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSK-LEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRG--VRNFL 161 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~ 161 (366)
|+|.. +.+.++|...+..+.. |+.|+.+.+.+...+..+ =..++.|+.|.+.++..++ ++.+.
T Consensus 315 LdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-------------e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 315 LDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-------------ENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred eeehh-ccccccchHHHhhhhHHHHHHhhhhcccccccccc-------------chhhHHHHHHHHhcCcccccchhhhc
Confidence 99999 8999998764555443 666776666553222000 0122344444444444332 22221
Q ss_pred ccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc
Q 040318 162 KFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT 241 (366)
Q Consensus 162 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~ 241 (366)
...+|+.|++++++..+.....+.++..|+.|++++|+++.++... ..++.|+.|...++ .+..+|
T Consensus 381 ----~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv---------a~~~~L~tL~ahsN-~l~~fP 446 (1081)
T KOG0618|consen 381 ----NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTV---------ANLGRLHTLRAHSN-QLLSFP 446 (1081)
T ss_pred ----cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHH---------HhhhhhHHHhhcCC-ceeech
Confidence 1223666666665442233336667778888888888887776422 25777888877777 677777
Q ss_pred cccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccc
Q 040318 242 WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAEN 295 (366)
Q Consensus 242 ~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 295 (366)
-+++++.|+.+|++.+..-+-..+ .... -|+||+|+++|...
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~l~-----------~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVTLP-----------EALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecccchhhhhhhh-----------hhCC-CcccceeeccCCcc
Confidence 777888888888875543332221 1111 27888888887654
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=8.2e-16 Score=120.76 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=118.2
Q ss_pred CCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccC
Q 040318 3 IRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNL 82 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L 82 (366)
+.+++++.|.+++|.++.+|+. +..+.+|++|++++| .++++|..++.++.|+.|++..|.+..+|.+++.++.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn----qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN----QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc----hhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 4567788888888888888888 778888888888888 88888888888888888888888888888888888888
Q ss_pred CEeeccccccCC--CcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccc
Q 040318 83 RYLNLERTYHLS--RFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNF 160 (366)
Q Consensus 83 ~~L~L~~c~~~~--~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 160 (366)
++||+.. +++. .+|.. +-.|+.|+-|.+++|.+ ...+..++.+++|+.|.+..+...+.+
T Consensus 105 evldlty-nnl~e~~lpgn-ff~m~tlralyl~dndf--------------e~lp~dvg~lt~lqil~lrdndll~lp-- 166 (264)
T KOG0617|consen 105 EVLDLTY-NNLNENSLPGN-FFYMTTLRALYLGDNDF--------------EILPPDVGKLTNLQILSLRDNDLLSLP-- 166 (264)
T ss_pred hhhhccc-cccccccCCcc-hhHHHHHHHHHhcCCCc--------------ccCChhhhhhcceeEEeeccCchhhCc--
Confidence 8888887 4443 36665 66777888888887765 455666777777777766544322211
Q ss_pred cccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceee
Q 040318 161 LKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELK 208 (366)
Q Consensus 161 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 208 (366)
-.++.+.+|+.|++.+|++..++
T Consensus 167 -------------------------keig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 167 -------------------------KEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred -------------------------HHHHHHHHHHHHhcccceeeecC
Confidence 15567788888888888876543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=1.1e-13 Score=137.02 Aligned_cols=202 Identities=14% Similarity=0.175 Sum_probs=142.8
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEe
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYL 85 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L 85 (366)
++|+.|++++|.++.+|..++ ++|++|++++| .++.+|..+. .+|+.|++++|++..+|..+. .+|+.|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N----~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ---GNIKTLYANSN----QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc---cCCCEEECCCC----ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEE
Confidence 478999999999999998743 58999999999 7888887554 589999999999999987764 589999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPK 165 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 165 (366)
++++ +.+..+|.. +. .+|+.|++++|.+...+ ..+. ..|+.|+++++....++..
T Consensus 268 ~Ls~-N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP--------------~~lp--~sL~~L~Ls~N~Lt~LP~~----- 322 (754)
T PRK15370 268 DLFH-NKISCLPEN-LP--EELRYLSVYDNSIRTLP--------------AHLP--SGITHLNVQSNSLTALPET----- 322 (754)
T ss_pred ECcC-CccCccccc-cC--CCCcEEECCCCccccCc--------------ccch--hhHHHHHhcCCccccCCcc-----
Confidence 9997 788888875 33 58999999999773321 1111 3567777777666554321
Q ss_pred ccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccC
Q 040318 166 LLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAF 245 (366)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~ 245 (366)
..++|+.|.+.++... .+.-.-.++|+.|++++|++..++. ...++|+.|++++| .++.+|.- -
T Consensus 323 l~~sL~~L~Ls~N~Lt---~LP~~l~~sL~~L~Ls~N~L~~LP~-----------~lp~~L~~LdLs~N-~Lt~LP~~-l 386 (754)
T PRK15370 323 LPPGLKTLEAGENALT---SLPASLPPELQVLDVSKNQITVLPE-----------TLPPTITTLDVSRN-ALTNLPEN-L 386 (754)
T ss_pred ccccceeccccCCccc---cCChhhcCcccEEECCCCCCCcCCh-----------hhcCCcCEEECCCC-cCCCCCHh-H
Confidence 2345888888777652 2211123678888888877765432 23357888888888 56666531 1
Q ss_pred CCCccEEEEEccCC
Q 040318 246 APNLKIIVIMHCDD 259 (366)
Q Consensus 246 l~~L~~L~L~~c~~ 259 (366)
.+.|+.|++++|..
T Consensus 387 ~~sL~~LdLs~N~L 400 (754)
T PRK15370 387 PAALQIMQASRNNL 400 (754)
T ss_pred HHHHHHHhhccCCc
Confidence 23577788877654
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=9e-15 Score=128.86 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=160.2
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccC-CCCccCch-hhhcCccCC
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSY-TDIRGLPH-ELTALLNLR 83 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~-~~i~~l~~-~i~~l~~L~ 83 (366)
..+.+.|..|.|+.+|+.+|+.+++|+.||+|.| .++.| |.+|..+++|..|-+.+ |+|+.+|+ .++++..|+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N----~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN----NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceeccccc----chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 4566888899999999999999999999999999 88887 66788899988888887 68999987 568889999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHH-hhcCCCCcceEEEEeccccc---cc-
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMK-ELLCLKLLNLISFSLYSSRG---VR- 158 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~---~~- 158 (366)
.|.+.- +.+..++.+++..+++|..|.+.+|.+... .. .+..+..++.+.+..+.+.. .+
T Consensus 144 rLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i--------------~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 144 RLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSI--------------CKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred HHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhh--------------ccccccchhccchHhhhcCccccccccch
Confidence 998877 677777777788999999999988865222 11 23333333333333222100 00
Q ss_pred ------------cccc-c---------------ccccccccEE---EEeccCCCC-cCccchhhhcccCceEecccccce
Q 040318 159 ------------NFLK-F---------------PKLLRITQAL---SISDCEIPL-LNVSHLAYMEHLKDLVIDNSNLEE 206 (366)
Q Consensus 159 ------------~~~~-~---------------~~~~~~L~~L---~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~ 206 (366)
.+.. . ......++.+ ....|.... .....+.++++|++|++++|+++.
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 0000 0 0000112222 111222200 111167888999999999999988
Q ss_pred eeccccCccccccccCCCCCcEEeEecCCCCcccc--cccCCCCccEEEEEccCCccccccccccccccccccccccccc
Q 040318 207 LKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAK 284 (366)
Q Consensus 207 l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
+...++ .....+++|.+..+ ++..+. -+..+..|+.|+|.+++... +.+ ..+....+
T Consensus 289 i~~~aF--------e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~-~~~-----------~aF~~~~~ 347 (498)
T KOG4237|consen 289 IEDGAF--------EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITT-VAP-----------GAFQTLFS 347 (498)
T ss_pred hhhhhh--------cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEE-Eec-----------ccccccce
Confidence 887666 36677888888777 555543 24567788888888776433 221 14555666
Q ss_pred ccccccc
Q 040318 285 LELLDLY 291 (366)
Q Consensus 285 L~~L~l~ 291 (366)
|.+|++-
T Consensus 348 l~~l~l~ 354 (498)
T KOG4237|consen 348 LSTLNLL 354 (498)
T ss_pred eeeeehc
Confidence 6777664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=3.2e-14 Score=129.56 Aligned_cols=257 Identities=18% Similarity=0.107 Sum_probs=136.6
Q ss_pred EEEccCCCCCc-cchhhhhcCCcccEEECCCCCCCCCcC-----ccCccccccccCCEEeccCCCCcc-------Cchhh
Q 040318 10 SILELSSNNKV-FEPSWFLSRASWTCLDNGPSRIKNSLT-----ELPSGISSLVSLQHLDVSYTDIRG-------LPHEL 76 (366)
Q Consensus 10 ~L~l~~~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~i~~-------l~~~i 76 (366)
.|+|.++.+.. -....+..+++|++|+++++ .++ .++..+...+++++|+++++.+.. ++..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~----~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGN----TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCC----CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence 35566665542 22333666777888888888 442 244445566778888888775542 22345
Q ss_pred hcCccCCEeeccccccCCCcChhhhcCCC---CCcEEEccCCCCCCccccccccccchHHHHHhhcCC-CCcceEEEEec
Q 040318 77 TALLNLRYLNLERTYHLSRFPPELICSFS---KLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCL-KLLNLISFSLY 152 (366)
Q Consensus 77 ~~l~~L~~L~L~~c~~~~~l~~~~l~~l~---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 152 (366)
..+++|+.|++++|......+.. +..+. +|++|++++|.+... ........+..+ ++|+.|+++++
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~---------~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDR---------GLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchH---------HHHHHHHHHHhCCCCceEEEcCCC
Confidence 66778888888774332223322 43443 388888887765110 011223445555 77788888776
Q ss_pred cccc--cccccccccccccccEEEEeccCCCCcCcc----chhhhcccCceEecccccceeeccccCccccccccCCCCC
Q 040318 153 SSRG--VRNFLKFPKLLRITQALSISDCEIPLLNVS----HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSL 226 (366)
Q Consensus 153 ~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L 226 (366)
.... ...+......+..|++|++.++...+.... .+..+++|+.|++.++.+.+.+..... . ....+++|
T Consensus 148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~--~--~~~~~~~L 223 (319)
T cd00116 148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA--E--TLASLKSL 223 (319)
T ss_pred cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH--H--HhcccCCC
Confidence 6552 112222222334577777776654111101 233445777777777665433321110 0 00356777
Q ss_pred cEEeEecCCCCccc--cccc-----CCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 227 HLASIAFCSRVKDL--TWLA-----FAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 227 ~~L~l~~~~~l~~l--~~l~-----~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
+.|++++| .+++. ..+. ..+.|++|++++|....+... .+......+++|++++++++
T Consensus 224 ~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~--------~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 224 EVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK--------DLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH--------HHHHHHhcCCCccEEECCCC
Confidence 77877777 45431 1111 236777777777754322110 11113344567777777764
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=3.4e-13 Score=135.64 Aligned_cols=283 Identities=23% Similarity=0.251 Sum_probs=177.7
Q ss_pred CCCCCcCEEEccCC-CCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCC-CccCchhhhcCc
Q 040318 3 IRYSNIPSILELSS-NNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTD-IRGLPHELTALL 80 (366)
Q Consensus 3 ~~~~~L~~L~l~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-i~~l~~~i~~l~ 80 (366)
..+|.|++||+++| .+.++|.+ ++.+-+||+|+++++ .+..+|..+.+++.|.+|++..+. ...+|.....+.
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t----~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT----GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred hhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC----CccccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 36999999999976 46779998 899999999999999 889999999999999999999984 445566667799
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEec-ccccccc
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLY-SSRGVRN 159 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~ 159 (366)
+|++|.+.. .... .....+..+.+|++|..-.+... .......+..+.+|+.+..... .......
T Consensus 643 ~Lr~L~l~~-s~~~-~~~~~l~el~~Le~L~~ls~~~~------------s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~ 708 (889)
T KOG4658|consen 643 SLRVLRLPR-SALS-NDKLLLKELENLEHLENLSITIS------------SVLLLEDLLGMTRLRSLLQSLSIEGCSKRT 708 (889)
T ss_pred cccEEEeec-cccc-cchhhHHhhhcccchhhheeecc------------hhHhHhhhhhhHHHHHHhHhhhhcccccce
Confidence 999999977 3321 12222455566666555444331 1123334444444443322211 1123333
Q ss_pred ccccccccccccEEEEeccCCCCcCccc-----hh-hhcccCceEecc-cccceeeccccCccccccccCCCCCcEEeEe
Q 040318 160 FLKFPKLLRITQALSISDCEIPLLNVSH-----LA-YMEHLKDLVIDN-SNLEELKTDCTGEVQKVLQCGFRSLHLASIA 232 (366)
Q Consensus 160 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~-~~~~L~~L~l~~-~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~ 232 (366)
.......+.+|+.|.+.+|......... .. .++++..+.+.+ ....+.. +....|+|+.|++.
T Consensus 709 ~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~----------~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 709 LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT----------WLLFAPHLTSLSLV 778 (889)
T ss_pred eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc----------hhhccCcccEEEEe
Confidence 3333445567999999998882211111 11 133333333333 2222211 11356899999999
Q ss_pred cCCCCccc-ccccCCCCccEEEEEccCCccc-ccccccccccccccccccccccccccccccccccccccCCC----cCC
Q 040318 233 FCSRVKDL-TWLAFAPNLKIIVIMHCDDLEE-IISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGA----LPL 306 (366)
Q Consensus 233 ~~~~l~~l-~~l~~l~~L~~L~L~~c~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~ 306 (366)
.|+.+.+. +....+..+..+.+..+....- ... ..++++++..+.+.+.. +.++.+.. ..+
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~------------~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~ 845 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFNKLEGLRMLC------------SLGGLPQLYWLPLSFLK-LEELIVEECPKLGKL 845 (889)
T ss_pred cccccccCCCHHHHhhhcccEEecccccccceeee------------cCCCCceeEecccCccc-hhheehhcCcccccC
Confidence 99877774 3344455555544433322111 111 56677777777776644 66665554 678
Q ss_pred CCccEEeccCC-CCCCCCCCCC
Q 040318 307 PQLKEIRVTQC-PKLKTLPLNS 327 (366)
Q Consensus 307 ~~L~~L~l~~c-~~l~~lp~~~ 327 (366)
|.+.++.+.+| +.+..+|.+.
T Consensus 846 P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 846 PLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred ccccccceeccccceeecCCcc
Confidence 99999999997 8888888873
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=2.6e-13 Score=123.59 Aligned_cols=260 Identities=19% Similarity=0.113 Sum_probs=168.5
Q ss_pred CCCcCEEEccCCCCCc-----cchhhhhcCCcccEEECCCCCCCCCcCc-------cCccccccccCCEEeccCCCCc-c
Q 040318 5 YSNIPSILELSSNNKV-----FEPSWFLSRASWTCLDNGPSRIKNSLTE-------LPSGISSLVSLQHLDVSYTDIR-G 71 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~-----l~~~~~~~~~~L~~L~l~~~~~~~~~~~-------l~~~~~~l~~L~~L~l~~~~i~-~ 71 (366)
+++|+.|++.++.+.. ++.. +...+.|+.|+++++ .+.. ++..+..+++|++|++++|.+. .
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~----~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN----ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc----ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 4568999999998853 4433 667788999999998 4442 2344667889999999999876 3
Q ss_pred CchhhhcCcc---CCEeeccccccCCC-----cChhhhcCC-CCCcEEEccCCCCCCccccccccccchHHHHHhhcCCC
Q 040318 72 LPHELTALLN---LRYLNLERTYHLSR-----FPPELICSF-SKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLK 142 (366)
Q Consensus 72 l~~~i~~l~~---L~~L~L~~c~~~~~-----l~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 142 (366)
.+..+..+.+ |++|++++| .+.. +... +..+ ++|++|++.+|.+... ........+..++
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~---------~~~~~~~~~~~~~ 165 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA---------SCEALAKALRANR 165 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch---------HHHHHHHHHHhCC
Confidence 4455555555 999999984 4442 2222 5666 8999999999977211 1123455677788
Q ss_pred CcceEEEEecccccc--ccccccccccccccEEEEeccCCCCcCcc----chhhhcccCceEecccccceeeccccCccc
Q 040318 143 LLNLISFSLYSSRGV--RNFLKFPKLLRITQALSISDCEIPLLNVS----HLAYMEHLKDLVIDNSNLEELKTDCTGEVQ 216 (366)
Q Consensus 143 ~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~ 216 (366)
+|+.|+++++...+. ..+.......++|++|++++|...+.... .+..+++|++|+++++.+.+.+..... .
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~--~ 243 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA--S 243 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH--H
Confidence 999999998766531 11211112235799999999875211111 455678899999999877654332111 0
Q ss_pred cccccCCCCCcEEeEecCCCCcc-----c-ccccCCCCccEEEEEccCCccccccccccccccccccccccc-ccccccc
Q 040318 217 KVLQCGFRSLHLASIAFCSRVKD-----L-TWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFF-AKLELLD 289 (366)
Q Consensus 217 ~~p~~~~~~L~~L~l~~~~~l~~-----l-~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ 289 (366)
.++ ...+.|++|++.+| .+++ + ..+..+++|+++++++|...++... .+...+..+ +.|+.++
T Consensus 244 ~~~-~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~--------~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 244 ALL-SPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ--------LLAESLLEPGNELESLW 313 (319)
T ss_pred HHh-ccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH--------HHHHHHhhcCCchhhcc
Confidence 011 13479999999999 5653 1 2344668999999999876654211 111133344 5677666
Q ss_pred ccc
Q 040318 290 LYH 292 (366)
Q Consensus 290 l~~ 292 (366)
+.+
T Consensus 314 ~~~ 316 (319)
T cd00116 314 VKD 316 (319)
T ss_pred cCC
Confidence 643
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=3e-14 Score=112.00 Aligned_cols=135 Identities=21% Similarity=0.306 Sum_probs=122.2
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCc--cCchhhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIR--GLPHELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~l~~~i~~l~~ 81 (366)
++.+|+.|+++.|.++++|.+ ++.++.|+.|++.-| .+..+|..|+.++-|+.||+.+|++. .+|..+-.+.-
T Consensus 54 ~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn----rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~t 128 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN----RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT 128 (264)
T ss_pred HhhhhhhhhcccchhhhcChh-hhhchhhhheecchh----hhhcCccccCCCchhhhhhccccccccccCCcchhHHHH
Confidence 578899999999999999999 899999999999999 78889999999999999999999876 78888889999
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccc
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRN 159 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 159 (366)
|+.|++++ +.+..+|.+ ++++++|+.|.+..|.+ -..+..++.+.+|++|.+.++.....+.
T Consensus 129 lralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndl--------------l~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 129 LRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDL--------------LSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHHHhcC-CCcccCChh-hhhhcceeEEeeccCch--------------hhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 99999999 888899998 99999999999999876 4678889999999999999888766543
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=2.5e-14 Score=127.03 Aligned_cols=260 Identities=17% Similarity=0.142 Sum_probs=142.2
Q ss_pred cccEEECCCCCCCCCcCcc--CccccccccCCEEeccCC-CCc--cCchhhhcCccCCEeeccccccCCCcChh-hhcCC
Q 040318 31 SWTCLDNGPSRIKNSLTEL--PSGISSLVSLQHLDVSYT-DIR--GLPHELTALLNLRYLNLERTYHLSRFPPE-LICSF 104 (366)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~l--~~~~~~l~~L~~L~l~~~-~i~--~l~~~i~~l~~L~~L~L~~c~~~~~l~~~-~l~~l 104 (366)
-|+.|.++++. ....- -.....++++++|++.+| .++ .+-..-.++.+|+++++..|..+++.... +...+
T Consensus 139 ~lk~LSlrG~r---~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCR---AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccc---cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 46777777774 33322 223445777777777777 444 22233456777777777777666664433 23457
Q ss_pred CCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcC
Q 040318 105 SKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLN 184 (366)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 184 (366)
++|++|++++|...+. ..+-......+.++.+...++.....+.+.....++..+..+++.+|...++.
T Consensus 216 ~kL~~lNlSwc~qi~~-----------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISG-----------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred hhHHHhhhccCchhhc-----------CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 7777777777754221 11222234445555555555544444455544445555555666666553333
Q ss_pred cc--chhhhcccCceEecc-cccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--ccc-CCCCccEEEEEccC
Q 040318 185 VS--HLAYMEHLKDLVIDN-SNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--WLA-FAPNLKIIVIMHCD 258 (366)
Q Consensus 185 ~~--~l~~~~~L~~L~l~~-~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~l~-~l~~L~~L~L~~c~ 258 (366)
.. .-..+..|+.+...+ ..+.+......+ ..+++|+.|.+..|..+++.. .++ +.+.|+.+++..|.
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALG-------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 32 223455666666655 334444333333 456777777777776666532 233 56667777766666
Q ss_pred Ccccccccccccccccccccccccccccccccccccccccc-----cCCCcCCCCccEEeccCCCCCC
Q 040318 259 DLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSI-----YQGALPLPQLKEIRVTQCPKLK 321 (366)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~ 321 (366)
.+.+.. +.....++|.||++.+++|...++. .....++..|+.+++++||.++
T Consensus 358 ~~~d~t----------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 358 LITDGT----------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred eehhhh----------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 555431 1113345677777777766655444 2223345566666777776666
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.23 E-value=2.7e-13 Score=120.52 Aligned_cols=287 Identities=15% Similarity=0.123 Sum_probs=193.5
Q ss_pred CcCEEEccCCCCCc--cchhhhhcCCcccEEECCCCCCCCCcCcc--CccccccccCCEEeccCC-CCcc--CchhhhcC
Q 040318 7 NIPSILELSSNNKV--FEPSWFLSRASWTCLDNGPSRIKNSLTEL--PSGISSLVSLQHLDVSYT-DIRG--LPHELTAL 79 (366)
Q Consensus 7 ~L~~L~l~~~~~~~--l~~~~~~~~~~L~~L~l~~~~~~~~~~~l--~~~~~~l~~L~~L~l~~~-~i~~--l~~~i~~l 79 (366)
.|+.|.++|+.-.. -...+..++|+++.|++.+|. .+++. ...-..|++|++|++..| .++. +-.....+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~---~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK---KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce---eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 47888888775432 223346789999999999996 55542 222345999999999997 6663 33345679
Q ss_pred ccCCEeeccccccCCC--cChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc
Q 040318 80 LNLRYLNLERTYHLSR--FPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV 157 (366)
Q Consensus 80 ~~L~~L~L~~c~~~~~--l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 157 (366)
++|++++++.|..+.. +.. ...++..++.+...+|.-.. ...+...=....-+..+++..+...+.
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~-----------le~l~~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELE-----------LEALLKAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred hhHHHhhhccCchhhcCcchH-Hhccchhhhhhhhccccccc-----------HHHHHHHhccChHhhccchhhhccccc
Confidence 9999999999988765 323 36678888888888874311 112222223334445555444433222
Q ss_pred ccccccccccccccEEEEeccCCCCcCcc-chh-hhcccCceEecc-cccceeeccccCccccccccCCCCCcEEeEecC
Q 040318 158 RNFLKFPKLLRITQALSISDCEIPLLNVS-HLA-YMEHLKDLVIDN-SNLEELKTDCTGEVQKVLQCGFRSLHLASIAFC 234 (366)
Q Consensus 158 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~-~~~~L~~L~l~~-~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~ 234 (366)
..+-....++..|+.+..++|...+.... .++ .+.+|+.+.+.. .++.+.++-.++ ..++.|+.+++..|
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-------rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-------RNCPHLERLDLEEC 356 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-------cCChhhhhhccccc
Confidence 22333334566789999999988444433 443 567899999987 567666665555 57899999999999
Q ss_pred CCCccc--c-cccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCC-CcCCCCcc
Q 040318 235 SRVKDL--T-WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG-ALPLPQLK 310 (366)
Q Consensus 235 ~~l~~l--~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~ 310 (366)
..+++. . ...+++.|+++.+++|..+++... ..+.....+...|+.+.+++|+..++-... ...+++|+
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 766553 2 233789999999999998887622 112224456778999999999887665433 44588999
Q ss_pred EEeccCCCCCCC
Q 040318 311 EIRVTQCPKLKT 322 (366)
Q Consensus 311 ~L~l~~c~~l~~ 322 (366)
.+++.+|..+++
T Consensus 430 ri~l~~~q~vtk 441 (483)
T KOG4341|consen 430 RIELIDCQDVTK 441 (483)
T ss_pred eeeeechhhhhh
Confidence 999999988875
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=4e-11 Score=97.76 Aligned_cols=131 Identities=20% Similarity=0.194 Sum_probs=51.6
Q ss_pred CCCCcCEEEccCCCCCccchhhhh-cCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhh-hcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFL-SRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHEL-TALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~-~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i-~~l~~ 81 (366)
++..++.|+|.++.|..+.. .+ .+.+|+.|++++| .++.++. +..++.|+.|++++|.++.+...+ ..+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N----~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN----QITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp -------------------S----TT-TT--EEE-TTS------S--TT-----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc--hhhhhcCCCEEECCCC----CCccccC-ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 45568889999998887754 34 5788999999999 7788764 777899999999999888886555 46889
Q ss_pred CCEeeccccccCCCcCh-hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEec
Q 040318 82 LRYLNLERTYHLSRFPP-ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLY 152 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 152 (366)
|++|++++ +.+.++.. ..+..+++|+.|++.+|++... ...-...+..+|+|+.|+-...
T Consensus 90 L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----------~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 90 LQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK----------KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp --EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS----------TTHHHHHHHH-TT-SEETTEET
T ss_pred CCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch----------hhHHHHHHHHcChhheeCCEEc
Confidence 99999988 77766432 2267788999999998876221 2233445566677777766543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1e-11 Score=111.17 Aligned_cols=213 Identities=16% Similarity=0.114 Sum_probs=152.0
Q ss_pred hhcCCcccEEECCCCCCCCCcCccCc--cccccccCCEEeccCCCCc---cCchhhhcCccCCEeeccccccCCCcChhh
Q 040318 26 FLSRASWTCLDNGPSRIKNSLTELPS--GISSLVSLQHLDVSYTDIR---GLPHELTALLNLRYLNLERTYHLSRFPPEL 100 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~l~~--~~~~l~~L~~L~l~~~~i~---~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~ 100 (366)
-++++.|+...+.++ .+...+. ....|++++.|||++|-+. .+-..+.++++|+.|+++. +.+.....+.
T Consensus 117 Qsn~kkL~~IsLdn~----~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~ 191 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY----RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSN 191 (505)
T ss_pred hhhHHhhhheeecCc----cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCcccc
Confidence 567889999999999 6776663 5677999999999999655 3345668899999999998 6665543321
Q ss_pred -hcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccC
Q 040318 101 -ICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCE 179 (366)
Q Consensus 101 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 179 (366)
-..++.|+.|.++.|++ ....+...+..++.|+.|.++.+....... .....+..|++|+|++..
T Consensus 192 ~~~~l~~lK~L~l~~CGl------------s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~--~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGL------------SWKDVQWILLTFPSLEVLYLEANEIILIKA--TSTKILQTLQELDLSNNN 257 (505)
T ss_pred chhhhhhhheEEeccCCC------------CHHHHHHHHHhCCcHHHhhhhcccccceec--chhhhhhHHhhccccCCc
Confidence 23578999999999988 234666777888999999999875322221 122334559999999998
Q ss_pred CCCcCcc-chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccc---cCCCCccEEEEE
Q 040318 180 IPLLNVS-HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWL---AFAPNLKIIVIM 255 (366)
Q Consensus 180 ~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l---~~l~~L~~L~L~ 255 (366)
..+.... ..+.++.|+.|++..+++.++..-..+ +.--...|++|++|++..+ .+.+++.+ ..+++|+.|.+.
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~--s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE--SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCcc--chhhhcccccceeeecccC-ccccccccchhhccchhhhhhcc
Confidence 8555555 678899999999998888776541110 0000157899999999988 56555544 456788888876
Q ss_pred ccCCc
Q 040318 256 HCDDL 260 (366)
Q Consensus 256 ~c~~~ 260 (366)
.++.-
T Consensus 335 ~n~ln 339 (505)
T KOG3207|consen 335 LNYLN 339 (505)
T ss_pred ccccc
Confidence 65543
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=1.3e-12 Score=115.49 Aligned_cols=240 Identities=17% Similarity=0.117 Sum_probs=148.3
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccC-chhhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGL-PHELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~ 81 (366)
.+++||+|+|+.|+|+.|.+..|+.++.|..|-+.+++ .++++|.. |..+..|+-|.+..|++..+ ...+..+++
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N---kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN---KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC---chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 67899999999999999999989999999888777743 99999875 77799999999999988854 457889999
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCC--------------------
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCL-------------------- 141 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------------------- 141 (366)
|..|.+.+ +.+..++...+..+..++++++..+.+.....+........ ..+..++..
T Consensus 166 l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a-~~~ietsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 166 LSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA-MNPIETSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred cchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHh-hchhhcccceecchHHHHHHHhcccchhh
Confidence 99999999 88888887668899999999988877422211100000000 000000000
Q ss_pred --CCcceE--EEEeccccccccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCcccc
Q 040318 142 --KLLNLI--SFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQK 217 (366)
Q Consensus 142 --~~L~~L--~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~ 217 (366)
..++.+ .+......+...-......+++|+.|+++++....+....+.....++.|.+..|+++.+...++
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f----- 318 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMF----- 318 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhh-----
Confidence 000000 00000000000000112334556666666666522333366666677777777777766665555
Q ss_pred ccccCCCCCcEEeEecCCCCccccc--ccCCCCccEEEEEcc
Q 040318 218 VLQCGFRSLHLASIAFCSRVKDLTW--LAFAPNLKIIVIMHC 257 (366)
Q Consensus 218 ~p~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~L~~L~L~~c 257 (366)
.++..|+.|++.++ .++.+.+ +..+..|..|.+-.+
T Consensus 319 ---~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 319 ---QGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred ---hccccceeeeecCC-eeEEEecccccccceeeeeehccC
Confidence 35666777777776 5665443 234555666665543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=8.2e-11 Score=95.92 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=41.8
Q ss_pred CCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcccc-ccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCC
Q 040318 16 SNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGIS-SLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLS 94 (366)
Q Consensus 16 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~ 94 (366)
+.|++.+. +.+...+++|+++++ .++.+.. ++ .+.+|+.|++++|+++.+. .+..++.|++|++++ +.++
T Consensus 7 ~~i~~~~~--~~n~~~~~~L~L~~n----~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~ 77 (175)
T PF14580_consen 7 NMIEQIAQ--YNNPVKLRELNLRGN----QISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRIS 77 (175)
T ss_dssp -----------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---
T ss_pred cccccccc--ccccccccccccccc----ccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCC
Confidence 34555555 466778899999999 7787754 65 5789999999999999885 688899999999999 8999
Q ss_pred CcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccc
Q 040318 95 RFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSR 155 (366)
Q Consensus 95 ~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 155 (366)
++...+...+++|++|++.+|.+... .....+..+++|+.|++.++...
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l------------~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDL------------NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SC------------CCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccccchHHhCCcCCEEECcCCcCCCh------------HHhHHHHcCCCcceeeccCCccc
Confidence 88765234689999999999987333 23456677788888888776654
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-11 Score=105.10 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCCCCcEEeEecCCCCcc--cccccCCCCccEEEEEccCCccccccccccccccccccccccccccccccccccc
Q 040318 222 GFRSLHLASIAFCSRVKD--LTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAE 294 (366)
Q Consensus 222 ~~~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 294 (366)
.||+|.+|++++|..+++ +..+.+++.|++|.++.|+.+..... -.+...|.|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~-----------~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL-----------LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe-----------eeeccCcceEEEEecccc
Confidence 677888888887776666 33455677777777777776543211 145566777777776653
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.5e-10 Score=101.49 Aligned_cols=135 Identities=15% Similarity=0.035 Sum_probs=57.9
Q ss_pred CCCCcCEEEccCCCCCcc--chhhhhcCCcccEEECCCCCCCCCcCccC-cc-ccccccCCEEeccCCCCc--cCchhhh
Q 040318 4 RYSNIPSILELSSNNKVF--EPSWFLSRASWTCLDNGPSRIKNSLTELP-SG-ISSLVSLQHLDVSYTDIR--GLPHELT 77 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l--~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~-~~~l~~L~~L~l~~~~i~--~l~~~i~ 77 (366)
.|++++.|+|++|-+... -..+...+|+|+.|+++.|. +.-.- .. -..+++|+.|.+++|+++ .+-..+.
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr----l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR----LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc----ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 455555555555544321 12234445555555555552 22111 10 112455555555555554 2222233
Q ss_pred cCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccc
Q 040318 78 ALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSR 155 (366)
Q Consensus 78 ~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 155 (366)
.+++|+.|++..++.+.....+ ..-++.|+.|++++|.+..+ ......+.++.|+.|.++.++..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~------------~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF------------DQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred hCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc------------ccccccccccchhhhhccccCcc
Confidence 4555555555552222111111 22344555555555544222 22233445555555555544433
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=2.9e-10 Score=97.51 Aligned_cols=130 Identities=13% Similarity=0.074 Sum_probs=105.3
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEee
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLN 86 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~ 86 (366)
.|+.++|++|.|+.+.++ ..-.|.+++|++|+| .+..+.. +..+++|+.||+++|.++.+..+-.++-|++.|.
T Consensus 285 ~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N----~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDES-VKLAPKLRRLILSQN----RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhccccccchhhhhhh-hhhccceeEEecccc----ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 477899999999988888 778899999999999 6666655 7788999999999998887766667788999999
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV 157 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 157 (366)
|+. +.+.++.. +.++-+|..|++.+|.+. .......+++++.|+.+.+.++.....
T Consensus 359 La~-N~iE~LSG--L~KLYSLvnLDl~~N~Ie------------~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQ-NKIETLSG--LRKLYSLVNLDLSSNQIE------------ELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhh-hhHhhhhh--hHhhhhheeccccccchh------------hHHHhcccccccHHHHHhhcCCCcccc
Confidence 998 78877766 788888999999999772 224456688889999998887766543
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=5.6e-10 Score=97.58 Aligned_cols=248 Identities=17% Similarity=0.144 Sum_probs=132.6
Q ss_pred hhcCCcccEEECCCCCCCCCcCc-----cCccccccccCCEEeccCCC---Cc-cCchh-------hhcCccCCEeeccc
Q 040318 26 FLSRASWTCLDNGPSRIKNSLTE-----LPSGISSLVSLQHLDVSYTD---IR-GLPHE-------LTALLNLRYLNLER 89 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~---i~-~l~~~-------i~~l~~L~~L~L~~ 89 (366)
...+..+..+++++| .++. +...+...++|+..++++-- .. .+|.. +..++.|++++|++
T Consensus 26 ~~~~~s~~~l~lsgn----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred hcccCceEEEeccCC----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 445677888888888 4442 33345566778887777641 11 34433 34566888888888
Q ss_pred cccCCC--cC--hhhhcCCCCCcEEEccCCCCCCccc--cccccccchHHHHHhhcCCCCcceEEEEeccccccc--ccc
Q 040318 90 TYHLSR--FP--PELICSFSKLEVLRMLESGADSTAE--QGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVR--NFL 161 (366)
Q Consensus 90 c~~~~~--l~--~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~ 161 (366)
+.+.. ++ .+++.+++.|++|.+.+|++....+ ++....+ -...+..+.-+.|+.+....+...+.+ .+.
T Consensus 102 -NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~--l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 102 -NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFE--LAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred -cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHH--HHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 54443 22 2457778888888888887632210 0000000 002233455677787777766654433 233
Q ss_pred ccccccccccEEEEeccCCCCcCc--c--chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCC
Q 040318 162 KFPKLLRITQALSISDCEIPLLNV--S--HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRV 237 (366)
Q Consensus 162 ~~~~~~~~L~~L~l~~~~~~~~~~--~--~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l 237 (366)
...+..+.|+.+.+.......-.. . .+..+++|+.|++..|.++.-+....+ . +-+.+++|+.|++++| .+
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La--k--aL~s~~~L~El~l~dc-ll 253 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA--K--ALSSWPHLRELNLGDC-LL 253 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH--H--Hhcccchheeeccccc-cc
Confidence 333334456666666555422222 1 566677777777777665543322111 0 1135667777777777 44
Q ss_pred cccc------c-ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 238 KDLT------W-LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 238 ~~l~------~-l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
.+=. . -...|.|+.|.+.+|..-.+... .+.......|.|+.|++++|
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHhcchhhHHhcCCcc
Confidence 4411 0 11356666666666654443221 11112233566666666654
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=7.5e-10 Score=102.53 Aligned_cols=152 Identities=24% Similarity=0.281 Sum_probs=127.3
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
++..|++|+|+.|.+..+|.. +..++ |++|-+++| +++.+|..++.+..|..||.+.|++..+|..++++.+|+
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN----kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr 192 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN----KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLR 192 (722)
T ss_pred hhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC----ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHH
Confidence 466788999999999999998 56666 899999999 889999999999999999999999999999999999999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
.|++.. +.+.++|.+ +. .-.|..||++.|++ ..++-.+..|++|++|-+..+....-+.-...
T Consensus 193 ~l~vrR-n~l~~lp~E-l~-~LpLi~lDfScNki--------------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 193 DLNVRR-NHLEDLPEE-LC-SLPLIRLDFSCNKI--------------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred HHHHhh-hhhhhCCHH-Hh-CCceeeeecccCce--------------eecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 999999 888999998 66 45599999999876 45677889999999999999988776654444
Q ss_pred ccccccccEEEEecc
Q 040318 164 PKLLRITQALSISDC 178 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~ 178 (366)
.+...-.+.|++..|
T Consensus 256 kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQAC 270 (722)
T ss_pred ccceeeeeeecchhc
Confidence 444444567777766
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=1.1e-08 Score=96.16 Aligned_cols=176 Identities=24% Similarity=0.335 Sum_probs=93.8
Q ss_pred cCCcccEEECCCCCCCCCcCccCccccccc-cCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCC
Q 040318 28 SRASWTCLDNGPSRIKNSLTELPSGISSLV-SLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSK 106 (366)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~-~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~ 106 (366)
..+.+..|++.++ .+.+++....... +|+.|++++|.+..+|..+..+++|+.|++++ +.+.+++.. ...+++
T Consensus 114 ~~~~l~~L~l~~n----~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~-~~~~~~ 187 (394)
T COG4886 114 ELTNLTSLDLDNN----NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKL-LSNLSN 187 (394)
T ss_pred cccceeEEecCCc----ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhh-hhhhhh
Confidence 3445555555555 5555555444442 55555555555555544555555555555555 455555542 335555
Q ss_pred CcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCcc
Q 040318 107 LEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVS 186 (366)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 186 (366)
|+.|++.++.+ ..++... .....|+++.+.+... ....
T Consensus 188 L~~L~ls~N~i-------------------------------------~~l~~~~---~~~~~L~~l~~~~N~~--~~~~ 225 (394)
T COG4886 188 LNNLDLSGNKI-------------------------------------SDLPPEI---ELLSALEELDLSNNSI--IELL 225 (394)
T ss_pred hhheeccCCcc-------------------------------------ccCchhh---hhhhhhhhhhhcCCcc--eecc
Confidence 55555555544 3322211 1122244444444422 2222
Q ss_pred -chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccCCCCccEEEEEccCCcc
Q 040318 187 -HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAFAPNLKIIVIMHCDDLE 261 (366)
Q Consensus 187 -~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~L~~c~~~~ 261 (366)
.+..+.++..+.+.++++..+.. ....++.++.|++.++ .+++++.++.+.+++.|+++++....
T Consensus 226 ~~~~~~~~l~~l~l~~n~~~~~~~---------~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 226 SSLSNLKNLSGLELSNNKLEDLPE---------SIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhhhhcccccccccCCceeeeccc---------hhccccccceeccccc-cccccccccccCccCEEeccCccccc
Confidence 44555666666665565554211 1135666888888777 67777667777788888887765443
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=3.5e-09 Score=99.42 Aligned_cols=128 Identities=30% Similarity=0.369 Sum_probs=104.8
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCC-cccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRA-SWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.+.++.|++.++.+.++++. ...++ +|+.|+++++ .+..+|..+..+++|+.|++++|++..+|...+..++|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N----~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN----KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred ccceeEEecCCcccccCccc-cccchhhccccccccc----chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 46789999999999999886 55564 9999999999 889998778999999999999999999988777899999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYS 153 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 153 (366)
.|++++ +.+..+|.. +..+..|++|.+.++.. ...+..+..+.++..+.+..+.
T Consensus 190 ~L~ls~-N~i~~l~~~-~~~~~~L~~l~~~~N~~--------------~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 190 NLDLSG-NKISDLPPE-IELLSALEELDLSNNSI--------------IELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred heeccC-CccccCchh-hhhhhhhhhhhhcCCcc--------------eecchhhhhcccccccccCCce
Confidence 999999 899999985 56778899999999843 1344455566666666554443
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.8e-10 Score=98.64 Aligned_cols=182 Identities=20% Similarity=0.148 Sum_probs=92.9
Q ss_pred cCCEEeccCCCCc--cCchhhhcCccCCEeeccccccCCC-cChhhhcCCCCCcEEEccCCCCCCccccccccccchHHH
Q 040318 58 SLQHLDVSYTDIR--GLPHELTALLNLRYLNLERTYHLSR-FPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPL 134 (366)
Q Consensus 58 ~L~~L~l~~~~i~--~l~~~i~~l~~L~~L~L~~c~~~~~-l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 134 (366)
.|++|||+...++ .+...++.|..|+.|.+.+ ..+.+ +... +.+-.+|+.|+++.|...+ ....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-----------~n~~ 252 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-----------ENAL 252 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHH-Hhccccceeeccccccccc-----------hhHH
Confidence 3566666665544 3334455556666666655 33332 3232 4444556666665553311 1122
Q ss_pred HHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCC-CcCcc--chhhhcccCceEecc-cccceeecc
Q 040318 135 MKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIP-LLNVS--HLAYMEHLKDLVIDN-SNLEELKTD 210 (366)
Q Consensus 135 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~--~l~~~~~L~~L~l~~-~~l~~l~~~ 210 (366)
--.+.+++.|..|+++++.......-......-++|+.|+++++... ..... -...+|+|-.|+++. ..++.-.+.
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 22345556666666665554332222222233344566666655441 01111 234566777777765 222221010
Q ss_pred ccCccccccccCCCCCcEEeEecCCCCcc--cccccCCCCccEEEEEccCCc
Q 040318 211 CTGEVQKVLQCGFRSLHLASIAFCSRVKD--LTWLAFAPNLKIIVIMHCDDL 260 (366)
Q Consensus 211 ~~~~~~~~p~~~~~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~L~~c~~~ 260 (366)
.+ -.|+.|++|+++.|..+.- +-.+...|.|++|++.+|-.-
T Consensus 333 ~~--------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 333 EF--------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HH--------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 01 3678888888888875543 334567888999988887544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=6e-09 Score=69.89 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=48.9
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDI 69 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i 69 (366)
|+|++|++++|.+..++...|..+++|++|++++| .++.++. .+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N----~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN----NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS----SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC----ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57888888888888888777888888888888888 7777754 567788888888888864
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=4.8e-10 Score=103.77 Aligned_cols=174 Identities=20% Similarity=0.183 Sum_probs=138.9
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
+......+++.|.+..+|.. +..|..|+.+.++.| .+-.+|..+..+..|.+||++.|++..+|..+..++ |+.
T Consensus 74 ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n----~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN----CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred ccchhhhhccccccccCchH-HHHHHHHHHHHHHhc----cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 44456678888999888888 788889999999988 778899889999999999999999999988887765 788
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|-+++ ++++.+|.+ ++.+..|.+|+.+.|.+ ...+..++.+..|+.|.+..+....++.-....
T Consensus 148 li~sN-Nkl~~lp~~-ig~~~tl~~ld~s~nei--------------~slpsql~~l~slr~l~vrRn~l~~lp~El~~L 211 (722)
T KOG0532|consen 148 LIVSN-NKLTSLPEE-IGLLPTLAHLDVSKNEI--------------QSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL 211 (722)
T ss_pred EEEec-CccccCCcc-cccchhHHHhhhhhhhh--------------hhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC
Confidence 88888 889999988 88889999999999865 567788888888998888887777665433221
Q ss_pred cccccccEEEEeccCCCCcCc-cchhhhcccCceEecccccce
Q 040318 165 KLLRITQALSISDCEIPLLNV-SHLAYMEHLKDLVIDNSNLEE 206 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~ 206 (366)
+ |..|+++.++. ... ..+..|++|++|.+.+|-+..
T Consensus 212 ---p-Li~lDfScNki--s~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 212 ---P-LIRLDFSCNKI--SYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ---c-eeeeecccCce--eecchhhhhhhhheeeeeccCCCCC
Confidence 1 77888877665 322 278889999999998876653
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.69 E-value=4.3e-09 Score=92.10 Aligned_cols=242 Identities=16% Similarity=0.102 Sum_probs=160.8
Q ss_pred CCCCcCEEEccCCCCCc-----cchhhhhcCCcccEEECCCCCCCCCcCccCcc-------ccccccCCEEeccCCCCc-
Q 040318 4 RYSNIPSILELSSNNKV-----FEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-------ISSLVSLQHLDVSYTDIR- 70 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~-----l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-------~~~l~~L~~L~l~~~~i~- 70 (366)
.+..++.++|+||.+.. +... +.+-+.|+..++++-.----..++|.. +-.++.|++|+||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~-L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKV-LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHH-HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 35678899999998863 3333 667789999998865200011234443 335779999999999544
Q ss_pred ----cCchhhhcCccCCEeeccccccCCCcChh-------------hhcCCCCCcEEEccCCCCCCccccccccccchHH
Q 040318 71 ----GLPHELTALLNLRYLNLERTYHLSRFPPE-------------LICSFSKLEVLRMLESGADSTAEQGSVLSEDAEP 133 (366)
Q Consensus 71 ----~l~~~i~~l~~L~~L~L~~c~~~~~l~~~-------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 133 (366)
.+-..++.+..|++|.|.+| .+.....+ .+.+-++|+.+...+|+.... ....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~---------ga~~ 176 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG---------GATA 176 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---------cHHH
Confidence 23335678899999999985 44432211 145567899999999877332 1234
Q ss_pred HHHhhcCCCCcceEEEEeccccccc--cccccccccccccEEEEeccCCCCcCcc----chhhhcccCceEeccccccee
Q 040318 134 LMKELLCLKLLNLISFSLYSSRGVR--NFLKFPKLLRITQALSISDCEIPLLNVS----HLAYMEHLKDLVIDNSNLEEL 207 (366)
Q Consensus 134 ~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~l 207 (366)
....+..++.|+.+.+..+.+..-. .+.....++++|+.|++.++........ .+..+++|+.++++.+.++.-
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 4566778899999999877654322 2333345678899999988876222222 677788999999988666654
Q ss_pred eccccCccccccccCCCCCcEEeEecCCCCcc------cccccCCCCccEEEEEccCCc
Q 040318 208 KTDCTGEVQKVLQCGFRSLHLASIAFCSRVKD------LTWLAFAPNLKIIVIMHCDDL 260 (366)
Q Consensus 208 ~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~------l~~l~~l~~L~~L~L~~c~~~ 260 (366)
++..+. ..+. ...|+|+.|.+.+| .++. ....+..|.|++|+|++|...
T Consensus 257 Ga~a~~--~al~-~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 257 GAIAFV--DALK-ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cHHHHH--HHHh-ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 442220 0001 35899999999999 5554 123456899999999999874
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=7.1e-09 Score=97.80 Aligned_cols=102 Identities=24% Similarity=0.233 Sum_probs=55.5
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEee
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLN 86 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~ 86 (366)
.+..+.+..+.+..+... ...+++|..|++.+| .+..+...+..+++|++|++++|.|+.+. .+..+..|+.|+
T Consensus 73 ~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n----~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN----KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred hHHhhccchhhhhhhhcc-cccccceeeeecccc----chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 344444444444442222 445566666666666 55555443455666666666666665552 445555566666
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
+.+ +.+..+.. +..+++|+.+++.+|.+
T Consensus 147 l~~-N~i~~~~~--~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 147 LSG-NLISDISG--LESLKSLKLLDLSYNRI 174 (414)
T ss_pred ecc-CcchhccC--CccchhhhcccCCcchh
Confidence 666 55555544 44566666666666654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=8.3e-08 Score=64.30 Aligned_cols=56 Identities=36% Similarity=0.612 Sum_probs=30.9
Q ss_pred CcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccCCEeeccc
Q 040318 30 ASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRYLNLER 89 (366)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~L~L~~ 89 (366)
|+|++|++++| .+..+|. .+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 1 p~L~~L~l~~n----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNN----KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSS----TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCC----CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 34556666666 5555543 34455666666666655554433 445555555555555
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=7.5e-07 Score=88.13 Aligned_cols=67 Identities=25% Similarity=0.447 Sum_probs=30.1
Q ss_pred cCccccccccCCEEeccCCCCc-cCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCC
Q 040318 49 LPSGISSLVSLQHLDVSYTDIR-GLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESG 116 (366)
Q Consensus 49 l~~~~~~l~~L~~L~l~~~~i~-~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~ 116 (366)
+|..+..+++|+.|++++|.+. .+|..++.+++|+.|+|++|.....+|.. +.++++|+.|++++|.
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNS 501 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCCc
Confidence 3444444444555555444443 44444444444555554442111233433 4444455555544443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=4.8e-08 Score=92.15 Aligned_cols=194 Identities=19% Similarity=0.197 Sum_probs=131.9
Q ss_pred cCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCCC
Q 040318 28 SRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKL 107 (366)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L 107 (366)
.+..++.+.+..+ .+..+...+..+.+|..|++.+|.+..+...+..+++|++|++++ +.++.+.. +..++.|
T Consensus 70 ~l~~l~~l~l~~n----~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~--l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQN----LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG--LSTLTLL 142 (414)
T ss_pred HhHhHHhhccchh----hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc--hhhccch
Confidence 4667777778888 666655557888999999999999988765588899999999999 89998877 7888889
Q ss_pred cEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCccc
Q 040318 108 EVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSH 187 (366)
Q Consensus 108 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 187 (366)
+.|++.+|.+ .....+..++.|+.++++++.....+... ...+..++.+.+.+... .....
T Consensus 143 ~~L~l~~N~i---------------~~~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i--~~i~~ 203 (414)
T KOG0531|consen 143 KELNLSGNLI---------------SDISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSI--REIEG 203 (414)
T ss_pred hhheeccCcc---------------hhccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCch--hcccc
Confidence 9999999977 44455556888888888888777665520 12233466777776665 22223
Q ss_pred hhhhcccCceEecccccceeeccccCccccccccCCC--CCcEEeEecCCCCccc-ccccCCCCccEEEEEccC
Q 040318 188 LAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFR--SLHLASIAFCSRVKDL-TWLAFAPNLKIIVIMHCD 258 (366)
Q Consensus 188 l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~--~L~~L~l~~~~~l~~l-~~l~~l~~L~~L~L~~c~ 258 (366)
+..+..+..+.+..+.+..+..- .... +|+.+++.++ .+... ..+..++++..|++.++.
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~~l----------~~~~~~~L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLEGL----------NELVMLHLRELYLSGN-RISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred hHHHHHHHHhhcccccceeccCc----------ccchhHHHHHHhcccC-ccccccccccccccccccchhhcc
Confidence 34444444445555555444320 1122 2677777777 45544 445556666666666544
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=6.3e-08 Score=83.38 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=84.6
Q ss_pred ccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHH
Q 040318 55 SLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPL 134 (366)
Q Consensus 55 ~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 134 (366)
-..-|+.+|+++|.|+.+-+++.-.+.++.|+++. +.+..+.. +..+.+|++|++++|.+.+. ...
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-----------~Gw 347 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN--LAELPQLQLLDLSGNLLAEC-----------VGW 347 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh--hhhcccceEeecccchhHhh-----------hhh
Confidence 34567777777777777666677777777777777 66666554 66777777777777755111 011
Q ss_pred HHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCcc-chhhhcccCceEecccccc
Q 040318 135 MKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVS-HLAYMEHLKDLVIDNSNLE 205 (366)
Q Consensus 135 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~ 205 (366)
- ..+-+++.|.++.+...+...+.... +|..|++.+++....+.. .++++|.|+.+.+.+|.+.
T Consensus 348 h---~KLGNIKtL~La~N~iE~LSGL~KLY----SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 348 H---LKLGNIKTLKLAQNKIETLSGLRKLY----SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred H---hhhcCEeeeehhhhhHhhhhhhHhhh----hheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 1 12455666677666655554443332 377777777776444444 8889999999999886654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.6e-07 Score=79.52 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=37.9
Q ss_pred cccccccEEEEeccCCCCcCcc-chhhhcccCceEecccccceeec-cccCccccccccCCCCCcEEeEecCCCCcccc-
Q 040318 165 KLLRITQALSISDCEIPLLNVS-HLAYMEHLKDLVIDNSNLEELKT-DCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT- 241 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~~-~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~- 241 (366)
..++++..+.+..|...+...- ....+|.+.-|++..+++.+.+. +.. ..|++|..|.+.+.+-+..+.
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L--------n~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL--------NGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH--------cCCchhheeeccCCcccccccC
Confidence 3445555555555543222221 33344455555555554433221 111 456677777666665433332
Q ss_pred ------cccCCCCccEEE
Q 040318 242 ------WLAFAPNLKIIV 253 (366)
Q Consensus 242 ------~l~~l~~L~~L~ 253 (366)
.++.+++++.|+
T Consensus 268 ~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 268 GERRFLLIARLTKVQVLN 285 (418)
T ss_pred CcceEEEEeeccceEEec
Confidence 134555555553
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=4.6e-06 Score=82.65 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=37.1
Q ss_pred cCEEEccCCCCCc-cchhhhhcCCcccEEECCCCCCCCCcC-ccCccccccccCCEEeccCCCCc-cCchhhhcCccCCE
Q 040318 8 IPSILELSSNNKV-FEPSWFLSRASWTCLDNGPSRIKNSLT-ELPSGISSLVSLQHLDVSYTDIR-GLPHELTALLNLRY 84 (366)
Q Consensus 8 L~~L~l~~~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~-~l~~~i~~l~~L~~ 84 (366)
++.|+|+++.+.. +|.. +..+++|+.|++++| .+. .+|..+..+++|+.|++++|++. .+|..++.+++|++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N----~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN----SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC----cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 3444555444442 3333 445555555555555 332 34444445555555555555444 44444555555555
Q ss_pred eeccc
Q 040318 85 LNLER 89 (366)
Q Consensus 85 L~L~~ 89 (366)
|+|++
T Consensus 495 L~Ls~ 499 (623)
T PLN03150 495 LNLNG 499 (623)
T ss_pred EECcC
Confidence 55554
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.18 E-value=4.1e-07 Score=87.60 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=25.4
Q ss_pred cccccccccccccccccCCCcC--CCCccEEeccCCCCCCCC
Q 040318 284 KLELLDLYHAENLKSIYQGALP--LPQLKEIRVTQCPKLKTL 323 (366)
Q Consensus 284 ~L~~L~l~~~~~l~~~~~~~~~--~~~L~~L~l~~c~~l~~l 323 (366)
.++.|.+..|...+.-...... +..++.+++.+|+.++..
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 3777888777665444333222 667788888888777743
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=1.7e-06 Score=85.75 Aligned_cols=136 Identities=18% Similarity=0.137 Sum_probs=82.3
Q ss_pred CcCEEEccCCCCC--ccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 7 NIPSILELSSNNK--VFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 7 ~L~~L~l~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
+|+.|+++|...- ..+..+..-+|.|+.|.+++-.+ .-+++.....++++|..||+++++++.+ .+++++++|++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 5777888775532 24444455678888888887632 2222333345678888888888888877 67888888888
Q ss_pred eeccccccCCC-cChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecc
Q 040318 85 LNLERTYHLSR-FPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYS 153 (366)
Q Consensus 85 L~L~~c~~~~~-l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 153 (366)
|.+.+ -.+.. .....+.++++|+.||+++......+ .....-.+--..+++|+.|+.++..
T Consensus 200 L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-------~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-------KIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccC-CCCCchhhHHHHhcccCCCeeeccccccccch-------HHHHHHHHhcccCccccEEecCCcc
Confidence 87766 22222 11112677888888888876552221 0001111222346778888777544
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=4.7e-06 Score=51.36 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=17.4
Q ss_pred cccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCcc
Q 040318 31 SWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRG 71 (366)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~ 71 (366)
+|++|++++| .++++|..+.+|++|++|++++|.++.
T Consensus 2 ~L~~L~l~~N----~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNN----QITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSS----S-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCC----CCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4455555555 444444444455555555555554443
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5e-06 Score=51.21 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS 51 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 51 (366)
++|++|++++|.++++++. ++++++|++|++++| .+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N----~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN----PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS----CCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC----CCCCCcC
Confidence 5899999999999999987 899999999999999 7776653
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=1.8e-07 Score=89.45 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=81.5
Q ss_pred ccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEE
Q 040318 32 WTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLR 111 (366)
Q Consensus 32 L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~ 111 (366)
|.+.+.++| .+..+...+.-++.|+.|+|++|+++.+- .+..++.|++|||++ |.++.+|.--...+. |..|.
T Consensus 166 L~~a~fsyN----~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYN----RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred Hhhhhcchh----hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeee
Confidence 444455565 55555555666777888888888777653 677788888888887 777777651123344 77788
Q ss_pred ccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCC
Q 040318 112 MLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEI 180 (366)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 180 (366)
+++|.+ .....+.++++|+.|+++++-...+..+...-.+ ..|+.|.+.++..
T Consensus 239 lrnN~l---------------~tL~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNAL---------------TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHH---------------HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 877754 5556677778888888887766665554443322 2366666665543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=1.7e-06 Score=74.63 Aligned_cols=228 Identities=16% Similarity=0.069 Sum_probs=128.0
Q ss_pred cccEEECCCCCCCCCcCccCc--cc-cccccCCEEeccCCCCccC---chhhhcCccCCEeeccccccCCC-cChhhh-c
Q 040318 31 SWTCLDNGPSRIKNSLTELPS--GI-SSLVSLQHLDVSYTDIRGL---PHELTALLNLRYLNLERTYHLSR-FPPELI-C 102 (366)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~l~~--~~-~~l~~L~~L~l~~~~i~~l---~~~i~~l~~L~~L~L~~c~~~~~-l~~~~l-~ 102 (366)
.++.|-+.++ .+...-. .+ ..+..++.|||.+|.+... -..+.+++.|++|+++. +.+.. +.. + .
T Consensus 46 a~ellvln~~----~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~--lp~ 118 (418)
T KOG2982|consen 46 ALELLVLNGS----IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKS--LPL 118 (418)
T ss_pred chhhheecCC----CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCcccc--Ccc
Confidence 4445555566 4443221 12 3478899999999988743 34557889999999987 55432 211 2 2
Q ss_pred CCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc-ccccccccEEEEeccCCC
Q 040318 103 SFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF-PKLLRITQALSISDCEIP 181 (366)
Q Consensus 103 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 181 (366)
-+.+|+.|.+.++.+.. ......+..++.+++|.++.+....+..-... ...-+.+.++.+..|...
T Consensus 119 p~~nl~~lVLNgT~L~w------------~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSW------------TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred cccceEEEEEcCCCCCh------------hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH
Confidence 34678888888887622 24445567778888887776532211100000 001112445555554431
Q ss_pred CcCcc--chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcc---cccccCCCCccEEEEEc
Q 040318 182 LLNVS--HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKD---LTWLAFAPNLKIIVIMH 256 (366)
Q Consensus 182 ~~~~~--~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~---l~~l~~l~~L~~L~L~~ 256 (366)
..... ...-+|++..+.+..+.+++...+--. ..+|.+-.|.++.+ ++.+ +..+..+|.|..|.+.+
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s-------e~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS-------EPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccC-------CCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccC
Confidence 11111 223457777777766666555432211 35666667777666 4544 44566889999999988
Q ss_pred cCCcccccccccccccccccccccccccccccccc
Q 040318 257 CDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLY 291 (366)
Q Consensus 257 c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 291 (366)
.+..+.....+-.. -.++.+++++.|+=+
T Consensus 259 ~Pl~d~l~~~err~------llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 259 NPLSDPLRGGERRF------LLIARLTKVQVLNGS 287 (418)
T ss_pred CcccccccCCcceE------EEEeeccceEEecCc
Confidence 87766553311111 144566777777543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=1.3e-07 Score=90.31 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=43.0
Q ss_pred EccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccc
Q 040318 12 LELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTY 91 (366)
Q Consensus 12 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~ 91 (366)
++++|.+..+..+ .+-+++|+.||++.| .+.+.. .+..|++|++|||++|.++.+|..-.--..|+.|.+++ |
T Consensus 170 ~fsyN~L~~mD~S-Lqll~ale~LnLshN----k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N 242 (1096)
T KOG1859|consen 170 SFSYNRLVLMDES-LQLLPALESLNLSHN----KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-N 242 (1096)
T ss_pred hcchhhHHhHHHH-HHHHHHhhhhccchh----hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-c
Confidence 3344444444333 444455555555555 444443 34445555555555554444433111111255555544 4
Q ss_pred cCCCcChhhhcCCCCCcEEEccCCC
Q 040318 92 HLSRFPPELICSFSKLEVLRMLESG 116 (366)
Q Consensus 92 ~~~~l~~~~l~~l~~L~~L~l~~~~ 116 (366)
.++.+.. +.++.+|+.|++++|-
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhh
Confidence 4444433 4455555555555443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=3.1e-05 Score=71.21 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=75.6
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCC-CCccCchhhhcCccC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYT-DIRGLPHELTALLNL 82 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~-~i~~l~~~i~~l~~L 82 (366)
.|++++.|++++|.+..+|. + ..+|+.|.+++|. .++.+|..+ ..+|++|++++| .+..+|.. |
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~---nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------L 114 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCN---NLTTLPGSI--PEGLEKLTVCHCPEISGLPES------V 114 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCC---CcccCCchh--hhhhhheEccCcccccccccc------c
Confidence 35777788888777777762 1 3357888887775 666666544 257788888877 56555543 5
Q ss_pred CEeeccc--cccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccc
Q 040318 83 RYLNLER--TYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNF 160 (366)
Q Consensus 83 ~~L~L~~--c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 160 (366)
+.|++.. |..+..+|.+ |+.|.+.++... .....+.. -...|+.|.+.++.....+
T Consensus 115 e~L~L~~n~~~~L~~LPss-------Lk~L~I~~~n~~-----------~~~~lp~~--LPsSLk~L~Is~c~~i~LP-- 172 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNG-------LTSLSINSYNPE-----------NQARIDNL--ISPSLKTLSLTGCSNIILP-- 172 (426)
T ss_pred ceEEeCCCCCcccccCcch-------Hhheeccccccc-----------cccccccc--cCCcccEEEecCCCcccCc--
Confidence 5555543 2223444443 445555432110 00001111 1167888888876644322
Q ss_pred cccccccccccEEEEecc
Q 040318 161 LKFPKLLRITQALSISDC 178 (366)
Q Consensus 161 ~~~~~~~~~L~~L~l~~~ 178 (366)
..++.+|++|++..+
T Consensus 173 ---~~LP~SLk~L~ls~n 187 (426)
T PRK15386 173 ---EKLPESLQSITLHIE 187 (426)
T ss_pred ---ccccccCcEEEeccc
Confidence 123456888888764
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=1.5e-05 Score=79.04 Aligned_cols=128 Identities=22% Similarity=0.189 Sum_probs=90.6
Q ss_pred CCCCcCEEEccCCCCCc--cchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccC--chhhhcC
Q 040318 4 RYSNIPSILELSSNNKV--FEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGL--PHELTAL 79 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~--l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l--~~~i~~l 79 (366)
-+|.|++|.+.+-.+.. +.. ...++|+|..||+|++ .++.+ ..++++++|+.|.+.+-.+..- -..+-.+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~T----nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGT----NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecchhHHH-HhhccCccceeecCCC----CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 58999999999877653 223 3778999999999999 77777 5689999999999888776632 2356789
Q ss_pred ccCCEeeccccccCCCcC---h---hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEE
Q 040318 80 LNLRYLNLERTYHLSRFP---P---ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFS 150 (366)
Q Consensus 80 ~~L~~L~L~~c~~~~~l~---~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 150 (366)
++|++||++. ......+ . +--..+++|+.||.+++.+ .....-..+..+++|+.+.+-
T Consensus 220 ~~L~vLDIS~-~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi------------~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 220 KKLRVLDISR-DKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI------------NEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cCCCeeeccc-cccccchHHHHHHHHhcccCccccEEecCCcch------------hHHHHHHHHHhCccHhhhhhh
Confidence 9999999998 4333322 1 1013489999999998866 122333334456666655543
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.84 E-value=2.4e-06 Score=82.26 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=19.2
Q ss_pred ccccccccc-ccccCCCcCCCCccEEeccCCCCCCC
Q 040318 288 LDLYHAENL-KSIYQGALPLPQLKEIRVTQCPKLKT 322 (366)
Q Consensus 288 L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~~ 322 (366)
+.+.+|+.+ ..+......+..++.|++..|..++.
T Consensus 381 ~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 381 LSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred HHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 444455555 22222222334488888888877663
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=2.7e-05 Score=63.66 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=81.7
Q ss_pred ccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCC--CCcccccc
Q 040318 166 LLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCS--RVKDLTWL 243 (366)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~--~l~~l~~l 243 (366)
...+...++++++.. .....+..++.|.+|.+.+|++.++..+.. ..+|+|..|.+.++. .+.++.++
T Consensus 40 ~~d~~d~iDLtdNdl--~~l~~lp~l~rL~tLll~nNrIt~I~p~L~--------~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDL--RKLDNLPHLPRLHTLLLNNNRITRIDPDLD--------TFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred cccccceecccccch--hhcccCCCccccceEEecCCcceeeccchh--------hhccccceEEecCcchhhhhhcchh
Confidence 344566778777776 555577889999999999999999876544 468999999999984 45667788
Q ss_pred cCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 244 AFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 244 ~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
+.+|+|++|.+-+++.-+.--- -...+..+|+|+.|++.+-
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~Y---------R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNY---------RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccCCccceeeecCCchhcccCc---------eeEEEEecCcceEeehhhh
Confidence 8999999999988775443210 0124567899999999853
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00018 Score=66.26 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCcccEEECCCCCCCCCcCccCccccccccCCEEeccCC-CCccCchhhhcCccCCEeeccccccCCCcC
Q 040318 29 RASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYT-DIRGLPHELTALLNLRYLNLERTYHLSRFP 97 (366)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~-~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~ 97 (366)
+++++.|++++| .++.+|. + -.+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c----~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDC----DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCC----CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 455666666655 5555552 1 124555666554 444444433 2355666665554444444
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=9.2e-06 Score=62.25 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=61.4
Q ss_pred EEEccCCCCCccchh--hhhcCCcccEEECCCCCCCCCcCccCccccc-cccCCEEeccCCCCccCchhhhcCccCCEee
Q 040318 10 SILELSSNNKVFEPS--WFLSRASWTCLDNGPSRIKNSLTELPSGISS-LVSLQHLDVSYTDIRGLPHELTALLNLRYLN 86 (366)
Q Consensus 10 ~L~l~~~~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~-l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~ 86 (366)
.++|+.+.+..++.. ....-.+|...++++| .++++|..+.. .+.++.|++++|.+..+|..+.-++.|+.|+
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N----~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDN----GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccc----hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 355555555433332 1333445566677777 66666655433 4467777777777777777777777777777
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
++. +.+...|.- +..+.+|-.|+..++..
T Consensus 107 l~~-N~l~~~p~v-i~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 107 LRF-NPLNAEPRV-IAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccc-CccccchHH-HHHHHhHHHhcCCCCcc
Confidence 777 555555543 44466666676666644
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=9.4e-05 Score=60.58 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=47.5
Q ss_pred CcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhh-cCccCCEeeccccccCCCcCh-hhhcCCCCC
Q 040318 30 ASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELT-ALLNLRYLNLERTYHLSRFPP-ELICSFSKL 107 (366)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~-~l~~L~~L~L~~c~~~~~l~~-~~l~~l~~L 107 (366)
.+...+|+++| .+.+++. +.+++.|..|.+..|+|+.+-+.+. .+++|+.|.+.+ +++..+.. .=+..|++|
T Consensus 42 d~~d~iDLtdN----dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDN----DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceeccccc----chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCcc
Confidence 34556667766 4455443 5566677777777777765544443 345577777766 55444321 004556677
Q ss_pred cEEEccCCCC
Q 040318 108 EVLRMLESGA 117 (366)
Q Consensus 108 ~~L~l~~~~~ 117 (366)
+.|.+-+|..
T Consensus 116 ~~Ltll~Npv 125 (233)
T KOG1644|consen 116 EYLTLLGNPV 125 (233)
T ss_pred ceeeecCCch
Confidence 7777766654
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=1.3e-05 Score=61.42 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=82.7
Q ss_pred CCcccEEECCCCCCCCCcCccCcc---ccccccCCEEeccCCCCccCchhhh-cCccCCEeeccccccCCCcChhhhcCC
Q 040318 29 RASWTCLDNGPSRIKNSLTELPSG---ISSLVSLQHLDVSYTDIRGLPHELT-ALLNLRYLNLERTYHLSRFPPELICSF 104 (366)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~l~~~---~~~l~~L~~L~l~~~~i~~l~~~i~-~l~~L~~L~L~~c~~~~~l~~~~l~~l 104 (366)
.+-+..++++.| .+-.++.. +....+|...++++|.+..+|+.+. +++-+..|++++ +.+.++|.+ +..+
T Consensus 26 akE~h~ldLssc----~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam 99 (177)
T KOG4579|consen 26 AKELHFLDLSSC----QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAM 99 (177)
T ss_pred HHHhhhcccccc----hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-Hhhh
Confidence 345677899999 66766654 4456677778999999998887664 456899999999 899999998 9999
Q ss_pred CCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc
Q 040318 105 SKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV 157 (366)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 157 (366)
+.|+.|+++.|.+ ...+..+..+.++..|+...+....+
T Consensus 100 ~aLr~lNl~~N~l--------------~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 100 PALRSLNLRFNPL--------------NAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred HHhhhcccccCcc--------------ccchHHHHHHHhHHHhcCCCCccccC
Confidence 9999999999987 23345555577777777665554443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=1.4e-05 Score=68.48 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=59.0
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCc--hhhhcCccC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLP--HELTALLNL 82 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~--~~i~~l~~L 82 (366)
+.+.+.|+..|+++.++.- ...|+.|++|.||-| .++.+.+ +.+|.+|++|+|..|.|..+- ..+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN----kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN----KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc----ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3455667777777766543 566777777777777 6666644 566777777777777665442 234566666
Q ss_pred CEeeccccccCCCcC----hhhhcCCCCCcEEE
Q 040318 83 RYLNLERTYHLSRFP----PELICSFSKLEVLR 111 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~----~~~l~~l~~L~~L~ 111 (366)
+.|-|..+.....-+ ..++.-+++|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666665432222222 12344555665554
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.34 E-value=0.00022 Score=61.19 Aligned_cols=198 Identities=15% Similarity=0.125 Sum_probs=101.2
Q ss_pred hcCCcccEEECCCCCCCCCcCc-----cCccccccccCCEEeccCCCCc----cCc-------hhhhcCccCCEeecccc
Q 040318 27 LSRASWTCLDNGPSRIKNSLTE-----LPSGISSLVSLQHLDVSYTDIR----GLP-------HELTALLNLRYLNLERT 90 (366)
Q Consensus 27 ~~~~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~----~l~-------~~i~~l~~L~~L~L~~c 90 (366)
..+..+..+++|+| .++. +...+.+-.+|+..+.+..... .++ +.+-+|+.|+..+|+++
T Consensus 27 ~~~d~~~evdLSGN----tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 27 EMMDELVEVDLSGN----TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HhhcceeEEeccCC----cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 34667777777777 3332 2223444566777666654211 222 23456788888888873
Q ss_pred ccCCCcCh---hhhcCCCCCcEEEccCCCCCCccccccccccc--hHHHHHhhcCCCCcceEEEEecccccccc--cccc
Q 040318 91 YHLSRFPP---ELICSFSKLEVLRMLESGADSTAEQGSVLSED--AEPLMKELLCLKLLNLISFSLYSSRGVRN--FLKF 163 (366)
Q Consensus 91 ~~~~~l~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~ 163 (366)
..-...|. ++++.-+.|.||.+++|+.....+ ..+... .-...+....-+.|+.+....+.....+. +...
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG--~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG--GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccch--hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 32223442 446777888888888887633310 000000 00112234456777777776665544322 1111
Q ss_pred ccccccccEEEEeccCCCCc--Ccc---chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecC
Q 040318 164 PKLLRITQALSISDCEIPLL--NVS---HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFC 234 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~--~~~---~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~ 234 (366)
...-.+|+.+.+..+..+.. +.+ .+..+.+|+.|++..|.++..+....+ ... ..-+.|+.|.+.+|
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La--~al--~~W~~lrEL~lnDC 252 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA--DAL--CEWNLLRELRLNDC 252 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH--HHh--cccchhhhccccch
Confidence 11113466666665554221 222 344566777777777665544332211 001 12344677777777
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00012 Score=62.34 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=48.8
Q ss_pred hhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCC--CCc-cCchhhhcCccCCEeeccccccCCC---cChh
Q 040318 26 FLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYT--DIR-GLPHELTALLNLRYLNLERTYHLSR---FPPE 99 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~--~i~-~l~~~i~~l~~L~~L~L~~c~~~~~---l~~~ 99 (366)
...+..|+.|.+.++ .++.+-. +..+++|++|.++.| ++. .++..+..+++|+++++++ +++.. ++.
T Consensus 39 ~d~~~~le~ls~~n~----gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p- 111 (260)
T KOG2739|consen 39 TDEFVELELLSVINV----GLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP- 111 (260)
T ss_pred cccccchhhhhhhcc----ceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch-
Confidence 334556666666666 3333322 445667777777777 433 4444455567777777777 55543 333
Q ss_pred hhcCCCCCcEEEccCCCC
Q 040318 100 LICSFSKLEVLRMLESGA 117 (366)
Q Consensus 100 ~l~~l~~L~~L~l~~~~~ 117 (366)
+..+.+|..|++..|..
T Consensus 112 -l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 112 -LKELENLKSLDLFNCSV 128 (260)
T ss_pred -hhhhcchhhhhcccCCc
Confidence 45566666777766654
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=5.6e-05 Score=64.90 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=68.8
Q ss_pred cCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcCh-hhhcCCCC
Q 040318 28 SRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPP-ELICSFSK 106 (366)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~-~~l~~l~~ 106 (366)
.+.+.+.|+..+| .+++|.- ..+++.|+.|.|+-|.|+.+ +.+..|++|++|+|.. +.+.++.. +++.++++
T Consensus 17 dl~~vkKLNcwg~----~L~DIsi-c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGC----GLDDISI-CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCC----CccHHHH-HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCch
Confidence 3556788999999 7777754 56799999999999999988 4688999999999999 78877764 55788999
Q ss_pred CcEEEccCCCC
Q 040318 107 LEVLRMLESGA 117 (366)
Q Consensus 107 L~~L~l~~~~~ 117 (366)
|+.|.+..|.-
T Consensus 90 Lr~LWL~ENPC 100 (388)
T KOG2123|consen 90 LRTLWLDENPC 100 (388)
T ss_pred hhhHhhccCCc
Confidence 99999988653
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=0.00022 Score=61.16 Aligned_cols=243 Identities=14% Similarity=0.045 Sum_probs=147.1
Q ss_pred ccccccCCEEeccCCCCc-----cCchhhhcCccCCEeeccccccCC----CcCh------hhhcCCCCCcEEEccCCCC
Q 040318 53 ISSLVSLQHLDVSYTDIR-----GLPHELTALLNLRYLNLERTYHLS----RFPP------ELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 53 ~~~l~~L~~L~l~~~~i~-----~l~~~i~~l~~L~~L~L~~c~~~~----~l~~------~~l~~l~~L~~L~l~~~~~ 117 (366)
+-.+..+..++|++|.|. .+...|.+-.+|+..+++. -... .++. .++.+|++|+..+++.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 445789999999999876 3444566667899888875 2222 1222 1377899999999999977
Q ss_pred CCccccccccccchHHHHHhhcCCCCcceEEEEeccccccc--ccc---------ccccccccccEEEEeccCCCCcCcc
Q 040318 118 DSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVR--NFL---------KFPKLLRITQALSISDCEIPLLNVS 186 (366)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~ 186 (366)
... ........+++...|.+|.+.+++...+. .+. +...-.+.|+++....++.......
T Consensus 105 g~~---------~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 105 GSE---------FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred Ccc---------cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence 322 23455667888999999999987654321 111 1111234577776665554222111
Q ss_pred ----chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc------ccCCCCccEEEEEc
Q 040318 187 ----HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW------LAFAPNLKIIVIMH 256 (366)
Q Consensus 187 ----~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~------l~~l~~L~~L~L~~ 256 (366)
.+..-..|+.+.+..|.+..-+...... .-...+.+|+.|+++++ -++...+ +..-+.|+.|.+..
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~---~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAF---LGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHH---HHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccc
Confidence 3333468889999887776443321100 00146889999999998 4444221 22346689999999
Q ss_pred cCCcccccccccccccccccc--ccccccccccccccccccccccc-------CCCcCCCCccEEeccCC
Q 040318 257 CDDLEEIISVEKLNQLSDIMG--ELNFFAKLELLDLYHAENLKSIY-------QGALPLPQLKEIRVTQC 317 (366)
Q Consensus 257 c~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~~~~L~~L~l~~c 317 (366)
|-....... ++.. .-..+|+|..|-+.+...-..+. .....+|-|..|.+.+.
T Consensus 252 Clls~~G~~--------~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 252 CLLSNEGVK--------SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred hhhccccHH--------HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 876554432 1111 12346888888887643322221 12345788887777763
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.42 E-value=0.0023 Score=54.74 Aligned_cols=88 Identities=19% Similarity=0.224 Sum_probs=45.9
Q ss_pred ccccCCEEeccCCCCccCchhhhcCccCCEeeccccc-cC-CCcChhhhcCCCCCcEEEccCCCCCCccccccccccchH
Q 040318 55 SLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTY-HL-SRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAE 132 (366)
Q Consensus 55 ~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~-~~-~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 132 (366)
.+..|+.|.+.+++++.+ ..+..+++|+.|.++.++ ++ ..++.- +..+++|++|++++|++.- .
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~------------l 106 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD------------L 106 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc------------c
Confidence 345566666666655543 234556677777776631 11 223332 4455777777777776511 1
Q ss_pred HHHHhhcCCCCcceEEEEeccccc
Q 040318 133 PLMKELLCLKLLNLISFSLYSSRG 156 (366)
Q Consensus 133 ~~~~~l~~l~~L~~L~l~~~~~~~ 156 (366)
.....+..+++|..|++..+..+.
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cccchhhhhcchhhhhcccCCccc
Confidence 222333444555566666555443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.22 E-value=0.0094 Score=46.07 Aligned_cols=101 Identities=15% Similarity=0.219 Sum_probs=43.2
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~ 81 (366)
.|++|+.+.+.. .+..++...|.+++.|+.+.+..+ +..++. .+..+..|+.+.+.. .+..++. .+..+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-----~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-----LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-----TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-----ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 455666666653 455566666666666666666543 233332 244555666666654 3332222 3445666
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCcEEEccC
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLEVLRMLE 114 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~ 114 (366)
|+.+++.. + +..++...+.++ +|+.+.+..
T Consensus 83 l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence 66666644 2 344444445555 666666554
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00066 Score=55.75 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=46.7
Q ss_pred CCCCCcEEeEecCCCCccc--cccc-CCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccccc
Q 040318 222 GFRSLHLASIAFCSRVKDL--TWLA-FAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKS 298 (366)
Q Consensus 222 ~~~~L~~L~l~~~~~l~~l--~~l~-~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 298 (366)
.++.++.|++.+|..+.+. ..++ -.|+|+.|+|++|+.+++... ..+..+++|+.|.|.+++.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhhhc
Confidence 5677888888888877773 3333 458888888888888887532 2566788888888877665443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0034 Score=32.13 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=7.9
Q ss_pred CCEEeccCCCCccCchh
Q 040318 59 LQHLDVSYTDIRGLPHE 75 (366)
Q Consensus 59 L~~L~l~~~~i~~l~~~ 75 (366)
|++|++++|+++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.23 E-value=0.048 Score=42.03 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=52.5
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~ 81 (366)
.+++|+.+.+..+ +..++...|.+++.++.+.+..+ +..++. .+..+.+|+.+++..+ +..++. .+.++ +
T Consensus 33 ~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-----~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 33 NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-----LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-----T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred ccccccccccccc-ccccceeeeeccccccccccccc-----ccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 5678999999874 88888888999999999999754 344443 4566999999999765 554443 45666 8
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCc
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLE 108 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~ 108 (366)
|+.+.+.. .+..++...+.++++|+
T Consensus 105 l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 105 LKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp --EEE-TT--B-SS----GGG------
T ss_pred ceEEEECC--CccEECCccccccccCC
Confidence 99888764 45566666677877764
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.67 E-value=0.011 Score=30.22 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=4.6
Q ss_pred ccEEECCCC
Q 040318 32 WTCLDNGPS 40 (366)
Q Consensus 32 L~~L~l~~~ 40 (366)
|++||+++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 445555555
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.49 E-value=0.025 Score=26.83 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=4.8
Q ss_pred cCCEEeccCCCCcc
Q 040318 58 SLQHLDVSYTDIRG 71 (366)
Q Consensus 58 ~L~~L~l~~~~i~~ 71 (366)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.013 Score=48.35 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=49.4
Q ss_pred hHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCcc-chhhhcccCceEecc
Q 040318 131 AEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVS-HLAYMEHLKDLVIDN 201 (366)
Q Consensus 131 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~ 201 (366)
.......+..++.++.|.+..+...+-..+..+....++|+.|++++|...+...+ .+..+++|+.|.+..
T Consensus 114 ~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 114 MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 44556667777888888887766655555555566778899999999988444444 666777777777654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.87 E-value=0.11 Score=27.59 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=12.7
Q ss_pred CCcCEEEccCCCCCccchhhh
Q 040318 6 SNIPSILELSSNNKVFEPSWF 26 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~ 26 (366)
++|++|+|.+|.+..+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666665544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.87 E-value=0.11 Score=27.59 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=12.7
Q ss_pred CCcCEEEccCCCCCccchhhh
Q 040318 6 SNIPSILELSSNNKVFEPSWF 26 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~ 26 (366)
++|++|+|.+|.+..+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666665544
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.38 E-value=0.085 Score=28.06 Aligned_cols=17 Identities=24% Similarity=0.729 Sum_probs=14.2
Q ss_pred CCCccEEeccCCCCCCC
Q 040318 306 LPQLKEIRVTQCPKLKT 322 (366)
Q Consensus 306 ~~~L~~L~l~~c~~l~~ 322 (366)
+|+|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57899999999988874
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.95 E-value=0.0042 Score=52.27 Aligned_cols=90 Identities=19% Similarity=0.101 Sum_probs=52.1
Q ss_pred cchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhh
Q 040318 21 FEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPEL 100 (366)
Q Consensus 21 l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~ 100 (366)
+|.-.+..+....+||++.+ .+..+-..+.-+..|..|+++.+.+..+|...+....++.+++.. +.....|.+
T Consensus 33 ~~v~ei~~~kr~tvld~~s~----r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s- 106 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSN----RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS- 106 (326)
T ss_pred cchhhhhccceeeeehhhhh----HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-
Confidence 34333445556666666666 444444445555566666666666666666666666666666655 555556655
Q ss_pred hcCCCCCcEEEccCCC
Q 040318 101 ICSFSKLEVLRMLESG 116 (366)
Q Consensus 101 l~~l~~L~~L~l~~~~ 116 (366)
....+.++.++.-++.
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 5566666666665554
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.25 E-value=0.26 Score=26.04 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=8.2
Q ss_pred cCCEEeccCCCCccCch
Q 040318 58 SLQHLDVSYTDIRGLPH 74 (366)
Q Consensus 58 ~L~~L~l~~~~i~~l~~ 74 (366)
+|++|++++|+++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44555555554444443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.25 E-value=0.26 Score=26.04 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=8.2
Q ss_pred cCCEEeccCCCCccCch
Q 040318 58 SLQHLDVSYTDIRGLPH 74 (366)
Q Consensus 58 ~L~~L~l~~~~i~~l~~ 74 (366)
+|++|++++|+++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44555555554444443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.41 E-value=0.018 Score=48.67 Aligned_cols=81 Identities=9% Similarity=0.018 Sum_probs=57.5
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.+.+.+.||++.+++..+... |+.++.|..|+++-+ .+..+|.+++....++++++..|.....|.+.++.+.++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn----q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN----QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh----hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 345666777777766665555 666777777777777 667777777777777777777777777777777777777
Q ss_pred Eeeccc
Q 040318 84 YLNLER 89 (366)
Q Consensus 84 ~L~L~~ 89 (366)
++++-.
T Consensus 115 ~~e~k~ 120 (326)
T KOG0473|consen 115 KNEQKK 120 (326)
T ss_pred hhhhcc
Confidence 777766
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.14 E-value=1.9 Score=22.89 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=10.2
Q ss_pred cCCEEeccCCCCccCch
Q 040318 58 SLQHLDVSYTDIRGLPH 74 (366)
Q Consensus 58 ~L~~L~l~~~~i~~l~~ 74 (366)
+|++|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666554
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=74.28 E-value=0.072 Score=51.02 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=93.0
Q ss_pred cCEEEccCCCCCcc----chhhhhcCCcccEEECCCCCCCCCcCc-----cCcccccc-ccCCEEeccCCCCc-----cC
Q 040318 8 IPSILELSSNNKVF----EPSWFLSRASWTCLDNGPSRIKNSLTE-----LPSGISSL-VSLQHLDVSYTDIR-----GL 72 (366)
Q Consensus 8 L~~L~l~~~~~~~l----~~~~~~~~~~L~~L~l~~~~~~~~~~~-----l~~~~~~l-~~L~~L~l~~~~i~-----~l 72 (366)
+..|.|.+|.+..- -...+...+.|+.|++++| .++. +-..+... ..|++|++..|.++ .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n----~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN----NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC----CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 55666777766531 1122455677777888888 4442 11112222 45666777777655 23
Q ss_pred chhhhcCccCCEeeccccccCCC----cChhhhc----CCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCC-
Q 040318 73 PHELTALLNLRYLNLERTYHLSR----FPPELIC----SFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKL- 143 (366)
Q Consensus 73 ~~~i~~l~~L~~L~L~~c~~~~~----l~~~~l~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~- 143 (366)
...+.....++++++..|..... ++.. +. ...++++|++.+|.+... .-......+...+.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~-l~~~~~~~~~le~L~L~~~~~t~~---------~c~~l~~~l~~~~~~ 234 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQA-LESAASPLSSLETLKLSRCGVTSS---------SCALLDEVLASGESL 234 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhh-hhhhhcccccHHHHhhhhcCcChH---------HHHHHHHHHhccchh
Confidence 34455566777777776322211 1111 33 356777888887765211 11123344555544
Q ss_pred cceEEEEecccccc--cccccccccc-ccccEEEEeccCCCCcCcc----chhhhcccCceEecccccce
Q 040318 144 LNLISFSLYSSRGV--RNFLKFPKLL-RITQALSISDCEIPLLNVS----HLAYMEHLKDLVIDNSNLEE 206 (366)
Q Consensus 144 L~~L~l~~~~~~~~--~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~ 206 (366)
++.+++..+...+. ..+......+ ..++.+++..+........ .+..+++++.+.++++.+.+
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 55566665544322 2222222222 3456666666655222211 44455567777776655443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.99 E-value=4.2 Score=20.78 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=7.4
Q ss_pred CCCCcEEEccCCCC
Q 040318 104 FSKLEVLRMLESGA 117 (366)
Q Consensus 104 l~~L~~L~l~~~~~ 117 (366)
+++|++|++++|.+
T Consensus 1 ~~~L~~L~l~~n~i 14 (24)
T PF13516_consen 1 NPNLETLDLSNNQI 14 (24)
T ss_dssp -TT-SEEE-TSSBE
T ss_pred CCCCCEEEccCCcC
Confidence 35677777777754
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.50 E-value=5.4 Score=21.19 Aligned_cols=10 Identities=20% Similarity=0.132 Sum_probs=5.0
Q ss_pred cccEEECCCC
Q 040318 31 SWTCLDNGPS 40 (366)
Q Consensus 31 ~L~~L~l~~~ 40 (366)
+|++|+++.|
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00365 3 NLEELDLSQN 12 (26)
T ss_pred ccCEEECCCC
Confidence 4455555555
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.62 E-value=5.9 Score=38.16 Aligned_cols=83 Identities=20% Similarity=0.088 Sum_probs=45.8
Q ss_pred cCCCCCcEEeEecCCCCccc---cccc-CCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccc
Q 040318 221 CGFRSLHLASIAFCSRVKDL---TWLA-FAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENL 296 (366)
Q Consensus 221 ~~~~~L~~L~l~~~~~l~~l---~~l~-~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 296 (366)
..+|.+..++++++ ++.++ ..+. ..|+|+.|+|+++...-+... +-.-.....|++|.+.|.+.-
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~----------el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES----------ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchh----------hhhhhcCCCHHHeeecCCccc
Confidence 46777788888877 44443 3333 457888888887621111100 001223456777777776655
Q ss_pred ccccCC-------CcCCCCccEEec
Q 040318 297 KSIYQG-------ALPLPQLKEIRV 314 (366)
Q Consensus 297 ~~~~~~-------~~~~~~L~~L~l 314 (366)
+.+... ...||+|..||=
T Consensus 284 ~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 284 TTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred cchhhhHHHHHHHHHhcchheeecC
Confidence 554322 224777776653
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.29 E-value=11 Score=20.22 Aligned_cols=14 Identities=0% Similarity=-0.097 Sum_probs=7.8
Q ss_pred CCcCEEEccCCCCC
Q 040318 6 SNIPSILELSSNNK 19 (366)
Q Consensus 6 ~~L~~L~l~~~~~~ 19 (366)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34556666655554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.99 E-value=11 Score=36.40 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=17.9
Q ss_pred CCCCcCEEEccCCCCCccc--hhhhhcCCcccEEECCCC
Q 040318 4 RYSNIPSILELSSNNKVFE--PSWFLSRASWTCLDNGPS 40 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~--~~~~~~~~~L~~L~l~~~ 40 (366)
+.|.+..++|+.|++.++. .++.+..|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445555555555544322 112344555555555555
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=47.15 E-value=1 Score=43.36 Aligned_cols=162 Identities=20% Similarity=0.173 Sum_probs=79.8
Q ss_pred CCCcCEEEccCCCCCccchhh----hhc-CCcccEEECCCCCCCCCcCc-----cCccccccccCCEEeccCCCCc----
Q 040318 5 YSNIPSILELSSNNKVFEPSW----FLS-RASWTCLDNGPSRIKNSLTE-----LPSGISSLVSLQHLDVSYTDIR---- 70 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~----~~~-~~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~---- 70 (366)
.++|..|++++|++.+..... +.. -+.|++|++..| .++. +...+.....++.++++.|.+.
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c----~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC----SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc----cccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 456777788877776321110 112 145666777777 3332 3334555677777777777553
Q ss_pred -cCchhhh----cCccCCEeeccccccCCCc----ChhhhcCCCC-CcEEEccCCCCCCccccccccccchHHHHHhhcC
Q 040318 71 -GLPHELT----ALLNLRYLNLERTYHLSRF----PPELICSFSK-LEVLRMLESGADSTAEQGSVLSEDAEPLMKELLC 140 (366)
Q Consensus 71 -~l~~~i~----~l~~L~~L~L~~c~~~~~l----~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 140 (366)
.++..+. ...++++|++.+|. ++.. -..++...+. ++.|++..|..... ........+..
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~---------g~~~L~~~l~~ 259 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKLGDV---------GVEKLLPCLSV 259 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCcchH---------HHHHHHHHhcc
Confidence 2223333 35667777777642 2210 0112344444 55566666654111 01122233334
Q ss_pred C-CCcceEEEEecccccc--ccccccccccccccEEEEeccCC
Q 040318 141 L-KLLNLISFSLYSSRGV--RNFLKFPKLLRITQALSISDCEI 180 (366)
Q Consensus 141 l-~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~ 180 (366)
+ ..++.+++..+.+... ..+......+.+++.+.+.....
T Consensus 260 ~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 260 LSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred cchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 4 5556666666555432 22333333344566666655544
Done!