Query 040318
Match_columns 366
No_of_seqs 162 out of 2243
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 5.7E-26 2E-30 208.1 19.8 280 4-338 42-339 (347)
2 3o6n_A APL1; leucine-rich repe 99.9 3.8E-26 1.3E-30 212.7 17.9 295 3-344 42-351 (390)
3 2id5_A Lingo-1, leucine rich r 99.9 9.6E-25 3.3E-29 208.5 21.9 278 6-326 32-314 (477)
4 4fmz_A Internalin; leucine ric 99.9 7.7E-25 2.6E-29 200.5 19.6 274 4-318 64-344 (347)
5 3oja_B Anopheles plasmodium-re 99.9 5.2E-25 1.8E-29 216.0 17.3 293 3-342 48-355 (597)
6 3o6n_A APL1; leucine-rich repe 99.9 4.3E-24 1.5E-28 198.7 20.2 278 4-318 67-350 (390)
7 2id5_A Lingo-1, leucine rich r 99.9 4.4E-24 1.5E-28 204.0 20.3 272 3-318 53-331 (477)
8 3v47_A TOLL-like receptor 5B a 99.9 2.4E-24 8.1E-29 204.5 17.8 296 6-342 30-405 (455)
9 1o6v_A Internalin A; bacterial 99.9 2.7E-23 9.2E-28 197.9 22.7 78 4-89 66-143 (466)
10 1xku_A Decorin; proteoglycan, 99.9 2.2E-23 7.5E-28 189.6 19.7 216 7-258 32-251 (330)
11 4eco_A Uncharacterized protein 99.9 1.1E-23 3.7E-28 208.0 18.8 320 4-348 204-603 (636)
12 2ft3_A Biglycan; proteoglycan, 99.9 5.4E-24 1.8E-28 193.8 15.3 261 7-318 34-305 (332)
13 3oja_B Anopheles plasmodium-re 99.9 2.4E-23 8.2E-28 204.2 20.0 278 4-318 73-356 (597)
14 3v47_A TOLL-like receptor 5B a 99.9 2.2E-23 7.4E-28 197.9 18.7 290 3-319 51-407 (455)
15 2z7x_B TOLL-like receptor 1, v 99.9 6.9E-23 2.4E-27 197.7 22.2 104 6-117 21-127 (520)
16 4ecn_A Leucine-rich repeat pro 99.9 1.4E-23 4.7E-28 211.8 17.8 304 4-348 489-843 (876)
17 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-23 1.3E-27 203.3 20.5 109 4-118 54-166 (606)
18 1o6v_A Internalin A; bacterial 99.9 5.4E-23 1.8E-27 195.8 20.3 283 5-342 45-341 (466)
19 3vq2_A TLR4, TOLL-like recepto 99.9 6.1E-23 2.1E-27 201.8 20.6 302 6-340 32-432 (606)
20 2z63_A TOLL-like receptor 4, v 99.9 1.1E-22 3.9E-27 198.3 21.5 109 4-118 50-162 (570)
21 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-23 1.4E-27 195.8 17.6 285 4-344 40-351 (457)
22 3t6q_A CD180 antigen; protein- 99.9 1.7E-23 5.9E-28 205.7 15.5 279 7-325 255-540 (606)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-22 8.1E-27 195.9 22.6 105 6-117 52-158 (562)
24 3t6q_A CD180 antigen; protein- 99.9 1.5E-22 5.3E-27 198.9 21.4 106 7-117 34-141 (606)
25 3rgz_A Protein brassinosteroid 99.9 2.2E-23 7.4E-28 210.3 14.4 273 4-317 221-524 (768)
26 4fcg_A Uncharacterized protein 99.9 3.7E-23 1.3E-27 187.8 14.5 88 6-98 81-168 (328)
27 2z81_A CD282 antigen, TOLL-lik 99.9 5.7E-23 1.9E-27 199.6 16.1 105 6-116 26-134 (549)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-22 9.6E-27 195.3 20.5 105 3-117 73-181 (562)
29 1ogq_A PGIP-2, polygalacturona 99.9 3.1E-23 1E-27 187.2 12.4 250 6-324 50-308 (313)
30 4eco_A Uncharacterized protein 99.9 5.2E-23 1.8E-27 203.1 15.0 289 4-319 271-599 (636)
31 4fcg_A Uncharacterized protein 99.9 1.8E-22 6.3E-27 183.2 16.3 239 29-350 80-319 (328)
32 2z63_A TOLL-like receptor 4, v 99.9 1.6E-22 5.6E-27 197.2 16.2 323 4-345 74-531 (570)
33 1ziw_A TOLL-like receptor 3; i 99.9 6E-22 2.1E-26 197.3 20.0 157 6-180 25-183 (680)
34 4ecn_A Leucine-rich repeat pro 99.9 3.6E-22 1.2E-26 201.5 18.5 279 4-319 546-839 (876)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-22 9.3E-27 190.1 16.2 274 4-324 62-355 (457)
36 2z81_A CD282 antigen, TOLL-lik 99.9 8.4E-22 2.9E-26 191.3 19.4 112 3-118 47-161 (549)
37 1xku_A Decorin; proteoglycan, 99.9 2E-21 6.8E-26 176.6 19.9 273 6-317 52-329 (330)
38 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-21 4.5E-26 199.2 20.3 136 5-156 23-162 (844)
39 3rgz_A Protein brassinosteroid 99.9 5.3E-22 1.8E-26 200.1 16.3 91 223-326 631-723 (768)
40 1ziw_A TOLL-like receptor 3; i 99.9 5.7E-21 2E-25 190.2 22.6 110 4-118 47-158 (680)
41 2z80_A TOLL-like receptor 2, v 99.9 2E-21 6.7E-26 178.3 16.5 275 4-318 29-312 (353)
42 2ft3_A Biglycan; proteoglycan, 99.9 1.6E-21 5.4E-26 177.4 15.5 274 6-318 54-331 (332)
43 3j0a_A TOLL-like receptor 5; m 99.9 9.6E-21 3.3E-25 192.9 21.8 111 3-118 45-161 (844)
44 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-22 6.1E-27 182.5 7.9 245 5-299 33-278 (317)
45 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-20 4.9E-25 181.5 20.7 124 9-155 3-128 (520)
46 2z66_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 176.6 11.1 125 9-154 10-138 (306)
47 3zyi_A Leucine-rich repeat-con 99.9 3.8E-21 1.3E-25 182.3 15.3 223 6-258 75-301 (452)
48 3zyj_A Leucine-rich repeat-con 99.9 3.9E-21 1.3E-25 181.6 15.2 224 6-259 64-291 (440)
49 2z80_A TOLL-like receptor 2, v 99.9 4.8E-21 1.6E-25 175.8 14.7 253 5-294 51-312 (353)
50 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-20 6.5E-25 184.6 19.5 105 221-339 466-574 (635)
51 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-20 4E-25 168.0 13.3 222 9-261 14-239 (285)
52 2z66_A Variable lymphocyte rec 99.8 1.6E-20 5.4E-25 168.8 14.0 202 6-259 28-235 (306)
53 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-19 5.6E-24 176.4 20.2 254 7-342 41-294 (622)
54 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.9E-25 170.3 10.4 225 4-298 74-306 (313)
55 3zyj_A Leucine-rich repeat-con 99.8 9.3E-20 3.2E-24 172.2 16.2 240 8-293 45-289 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 1.1E-19 3.9E-24 172.2 15.9 240 8-293 56-300 (452)
57 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-19 1.5E-23 173.4 19.7 235 6-318 61-295 (622)
58 3oja_A Leucine-rich immune mol 99.8 2.1E-20 7.3E-25 178.6 8.7 240 4-293 32-272 (487)
59 1jl5_A Outer protein YOPM; leu 99.8 7.1E-19 2.4E-23 166.5 19.1 264 6-330 131-421 (454)
60 3o53_A Protein LRIM1, AGAP0063 99.8 7.1E-20 2.4E-24 165.4 11.7 263 8-323 12-278 (317)
61 1ozn_A Reticulon 4 receptor; N 99.8 3.8E-19 1.3E-23 158.2 15.1 196 33-259 14-213 (285)
62 1jl5_A Outer protein YOPM; leu 99.8 1.8E-18 6E-23 163.8 19.8 256 6-322 111-371 (454)
63 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.7E-23 172.0 17.9 84 221-318 491-578 (635)
64 1wwl_A Monocyte differentiatio 99.8 6.2E-20 2.1E-24 165.4 7.3 240 7-293 44-306 (312)
65 1h6u_A Internalin H; cell adhe 99.8 1.1E-18 3.9E-23 156.8 14.9 192 27-259 38-229 (308)
66 2z62_A TOLL-like receptor 4, v 99.8 1.8E-18 6.3E-23 153.0 14.6 201 30-259 28-236 (276)
67 1h6u_A Internalin H; cell adhe 99.8 2.1E-18 7.1E-23 155.1 14.6 195 4-241 39-233 (308)
68 3ogk_B Coronatine-insensitive 99.8 2.9E-19 1E-23 175.0 9.8 287 4-322 162-527 (592)
69 2o6q_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 150.5 15.3 197 7-259 17-217 (270)
70 1wwl_A Monocyte differentiatio 99.8 4.2E-20 1.4E-24 166.5 1.0 246 26-318 39-307 (312)
71 2ast_B S-phase kinase-associat 99.8 1.2E-18 4.3E-23 158.4 10.6 223 7-293 48-282 (336)
72 3rfs_A Internalin B, repeat mo 99.8 2.6E-18 8.9E-23 151.7 11.1 191 11-258 24-216 (272)
73 1p9a_G Platelet glycoprotein I 99.7 7.6E-18 2.6E-22 150.0 12.5 198 4-259 8-207 (290)
74 1z7x_W Ribonuclease inhibitor; 99.7 1.8E-19 6.1E-24 171.1 2.0 314 4-340 26-406 (461)
75 1z7x_W Ribonuclease inhibitor; 99.7 1.6E-19 5.4E-24 171.5 1.2 300 4-321 54-411 (461)
76 3oja_A Leucine-rich immune mol 99.7 6.3E-18 2.2E-22 161.4 12.3 234 29-315 33-270 (487)
77 2xwt_C Thyrotropin receptor; s 99.7 3.6E-18 1.2E-22 147.8 9.7 196 31-258 32-237 (239)
78 3rfs_A Internalin B, repeat mo 99.7 7.2E-18 2.5E-22 148.8 11.2 195 4-259 39-234 (272)
79 3ogk_B Coronatine-insensitive 99.7 2.1E-18 7.2E-23 168.9 7.7 275 4-316 190-547 (592)
80 2o6q_A Variable lymphocyte rec 99.7 3.8E-17 1.3E-21 144.0 14.1 178 6-235 37-216 (270)
81 2z62_A TOLL-like receptor 4, v 99.7 3.1E-17 1E-21 145.1 12.6 153 34-208 11-165 (276)
82 2xwt_C Thyrotropin receptor; s 99.7 9.4E-18 3.2E-22 145.2 8.6 207 45-295 22-238 (239)
83 2ca6_A RAN GTPase-activating p 99.7 2.5E-18 8.4E-23 159.6 3.2 245 21-294 24-314 (386)
84 4glp_A Monocyte differentiatio 99.7 3E-17 1E-21 147.7 10.1 136 6-157 64-212 (310)
85 2ast_B S-phase kinase-associat 99.7 4.4E-18 1.5E-22 154.7 4.5 202 6-257 70-282 (336)
86 1h6t_A Internalin B; cell adhe 99.7 1.3E-16 4.6E-21 142.0 13.9 184 13-261 31-214 (291)
87 1p9a_G Platelet glycoprotein I 99.7 8.9E-17 3E-21 143.1 12.1 177 5-235 30-206 (290)
88 2ca6_A RAN GTPase-activating p 99.7 3.7E-18 1.3E-22 158.4 3.2 245 4-262 30-318 (386)
89 1h6t_A Internalin B; cell adhe 99.7 1.4E-16 4.8E-21 141.9 12.7 169 4-204 44-212 (291)
90 2p1m_B Transport inhibitor res 99.7 5.3E-18 1.8E-22 166.1 3.3 276 4-319 154-518 (594)
91 3goz_A Leucine-rich repeat-con 99.7 6.1E-17 2.1E-21 148.9 8.9 259 10-294 2-295 (362)
92 2p1m_B Transport inhibitor res 99.7 2.6E-17 9E-22 161.1 5.7 38 279-318 428-467 (594)
93 4ay9_X Follicle-stimulating ho 99.7 2.1E-16 7.3E-21 144.6 11.2 223 10-255 13-254 (350)
94 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.3E-21 155.8 9.6 184 11-259 26-209 (605)
95 4ay9_X Follicle-stimulating ho 99.7 3.1E-16 1E-20 143.5 11.6 236 33-316 12-255 (350)
96 1m9s_A Internalin B; cell inva 99.6 7.7E-16 2.6E-20 150.2 12.7 174 4-209 41-214 (605)
97 3m19_A Variable lymphocyte rec 99.6 2.4E-15 8.2E-20 131.0 12.9 103 7-117 15-119 (251)
98 3goz_A Leucine-rich repeat-con 99.6 2.7E-16 9.3E-21 144.5 4.9 258 34-318 2-295 (362)
99 4glp_A Monocyte differentiatio 99.6 2.4E-15 8.2E-20 135.2 9.1 203 5-259 90-306 (310)
100 3m19_A Variable lymphocyte rec 99.6 9.5E-15 3.2E-19 127.2 12.1 134 6-157 35-170 (251)
101 1xeu_A Internalin C; cellular 99.6 1.8E-15 6.1E-20 132.7 6.2 125 6-157 19-143 (263)
102 4ezg_A Putative uncharacterize 99.6 6E-15 2.1E-19 123.5 8.8 152 27-205 41-194 (197)
103 4ezg_A Putative uncharacterize 99.5 2.1E-14 7.1E-19 120.2 10.0 148 54-234 41-191 (197)
104 1xeu_A Internalin C; cellular 99.5 3.5E-14 1.2E-18 124.4 11.2 127 4-157 39-165 (263)
105 2ell_A Acidic leucine-rich nuc 99.5 2.4E-14 8E-19 116.7 9.1 138 4-158 22-163 (168)
106 2v9t_B SLIT homolog 2 protein 99.5 2.8E-14 9.5E-19 121.6 9.8 149 9-180 14-164 (220)
107 3cvr_A Invasion plasmid antige 99.5 4.5E-14 1.5E-18 136.5 11.9 86 168-263 160-246 (571)
108 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 116.9 11.1 167 9-205 10-178 (208)
109 3e6j_A Variable lymphocyte rec 99.5 8.3E-14 2.9E-18 119.4 10.2 148 9-180 22-171 (229)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.7E-18 117.9 9.5 149 9-180 14-165 (220)
111 2je0_A Acidic leucine-rich nuc 99.5 5.5E-14 1.9E-18 112.1 7.0 129 4-149 15-147 (149)
112 3cvr_A Invasion plasmid antige 99.5 2.5E-13 8.5E-18 131.2 12.3 174 7-234 60-240 (571)
113 2v9t_B SLIT homolog 2 protein 99.5 2E-13 6.7E-18 116.3 10.2 132 6-155 32-165 (220)
114 2xot_A Amphoterin-induced prot 99.5 2.2E-13 7.5E-18 125.0 10.6 175 9-204 21-201 (361)
115 1a9n_A U2A', U2A'; complex (nu 99.4 2.8E-13 9.5E-18 111.2 9.5 136 4-156 17-154 (176)
116 3e6j_A Variable lymphocyte rec 99.4 6.3E-13 2.1E-17 113.9 11.9 133 5-156 39-173 (229)
117 2xot_A Amphoterin-induced prot 99.4 8.8E-13 3E-17 121.0 9.8 158 6-180 39-201 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 1.7E-12 5.9E-17 110.5 10.7 133 6-156 32-167 (220)
119 1w8a_A SLIT protein; signaling 99.4 7.8E-13 2.7E-17 110.1 7.6 126 9-155 11-139 (192)
120 2o6s_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 107.4 11.6 134 5-156 27-162 (208)
121 1dce_A Protein (RAB geranylger 99.4 6.7E-15 2.3E-19 142.7 -6.3 197 2-253 345-566 (567)
122 2wfh_A SLIT homolog 2 protein 99.4 2E-12 6.7E-17 107.8 9.4 125 9-154 13-138 (193)
123 2wfh_A SLIT homolog 2 protein 99.4 5.2E-12 1.8E-16 105.2 11.4 107 5-117 30-138 (193)
124 2o6r_A Variable lymphocyte rec 99.3 6.3E-12 2.1E-16 103.1 11.4 127 8-155 9-137 (177)
125 1dce_A Protein (RAB geranylger 99.3 2.7E-12 9.3E-17 124.4 10.5 102 7-117 442-545 (567)
126 3sb4_A Hypothetical leucine ri 99.3 6E-12 2.1E-16 113.9 11.9 260 5-313 48-327 (329)
127 2ell_A Acidic leucine-rich nuc 99.3 3.4E-12 1.1E-16 103.8 8.4 112 28-158 22-136 (168)
128 2je0_A Acidic leucine-rich nuc 99.3 2.8E-12 9.4E-17 102.1 6.8 104 3-113 39-148 (149)
129 1w8a_A SLIT protein; signaling 99.3 8.9E-12 3E-16 103.7 9.4 107 6-117 29-138 (192)
130 4b8c_D Glucose-repressible alc 99.3 6.5E-12 2.2E-16 125.4 9.9 108 4-118 222-329 (727)
131 2o6r_A Variable lymphocyte rec 99.2 2.8E-11 9.7E-16 99.1 10.0 108 5-117 27-136 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1.1E-11 3.6E-16 101.7 7.4 105 6-117 42-152 (176)
133 3sb4_A Hypothetical leucine ri 99.2 2.2E-11 7.5E-16 110.2 9.9 282 6-338 25-327 (329)
134 2r9u_A Variable lymphocyte rec 99.2 3.5E-11 1.2E-15 98.4 10.2 103 8-118 14-118 (174)
135 4b8c_D Glucose-repressible alc 99.2 5.3E-12 1.8E-16 126.0 6.3 115 22-156 216-330 (727)
136 3g39_A Variable lymphocyte rec 99.2 3.6E-11 1.2E-15 97.9 10.1 103 7-117 10-114 (170)
137 1ds9_A Outer arm dynein; leuci 99.2 4.8E-13 1.6E-17 112.0 -1.1 148 6-174 23-180 (198)
138 1ds9_A Outer arm dynein; leuci 99.2 2.9E-12 9.8E-17 107.2 2.8 114 48-180 39-152 (198)
139 4fdw_A Leucine rich hypothetic 99.1 2.4E-09 8.1E-14 99.3 18.0 234 6-293 113-355 (401)
140 4fdw_A Leucine rich hypothetic 99.0 1E-08 3.4E-13 95.1 18.2 265 26-346 109-384 (401)
141 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.8E-14 89.3 9.7 89 5-98 32-122 (174)
142 3g39_A Variable lymphocyte rec 99.0 6.4E-10 2.2E-14 90.4 8.1 105 31-155 10-115 (170)
143 2ifg_A High affinity nerve gro 98.9 6.9E-09 2.3E-13 94.3 10.1 103 9-119 11-117 (347)
144 3un9_A NLR family member X1; l 98.8 1.5E-09 5.1E-14 99.6 2.7 22 188-209 235-256 (372)
145 2ifg_A High affinity nerve gro 98.6 6.7E-08 2.3E-12 87.7 9.0 87 4-95 29-117 (347)
146 3un9_A NLR family member X1; l 98.6 8.3E-09 2.8E-13 94.7 2.7 161 5-180 71-251 (372)
147 3e4g_A ATP synthase subunit S, 98.6 2.1E-08 7E-13 81.0 3.7 87 224-322 61-154 (176)
148 3e4g_A ATP synthase subunit S, 98.5 4E-08 1.4E-12 79.3 3.2 88 193-299 62-155 (176)
149 4fs7_A Uncharacterized protein 98.5 3.4E-06 1.2E-10 77.9 16.3 56 4-65 69-125 (394)
150 2ra8_A Uncharacterized protein 98.4 5.9E-07 2E-11 81.8 7.8 172 26-209 135-324 (362)
151 4gt6_A Cell surface protein; l 98.4 6E-06 2.1E-10 76.2 14.7 107 4-115 61-170 (394)
152 4fs7_A Uncharacterized protein 98.4 4.3E-06 1.5E-10 77.2 13.3 240 18-312 150-393 (394)
153 2ra8_A Uncharacterized protein 98.3 5.8E-07 2E-11 81.8 6.4 164 53-261 135-321 (362)
154 1io0_A Tropomodulin; LRR prote 98.3 6.2E-07 2.1E-11 73.6 5.0 117 26-155 32-164 (185)
155 4gt6_A Cell surface protein; l 98.2 8.7E-05 3E-09 68.4 17.2 91 18-115 51-147 (394)
156 1io0_A Tropomodulin; LRR prote 98.0 4E-06 1.4E-10 68.7 5.0 107 4-117 34-163 (185)
157 3rw6_A Nuclear RNA export fact 98.0 1.1E-05 3.7E-10 69.9 7.5 81 26-112 166-258 (267)
158 3rw6_A Nuclear RNA export fact 97.8 2.3E-05 8E-10 67.8 5.6 111 26-149 137-258 (267)
159 4h09_A Hypothetical leucine ri 97.7 0.001 3.5E-08 60.7 16.0 77 5-89 45-122 (379)
160 4h09_A Hypothetical leucine ri 97.0 0.0014 4.9E-08 59.7 7.4 125 4-150 215-341 (379)
161 3rfe_A Platelet glycoprotein I 95.7 0.016 5.5E-07 44.0 5.4 54 61-117 12-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 95.7 0.02 6.8E-07 46.8 6.3 118 26-153 37-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 95.3 0.025 8.4E-07 46.2 5.5 60 56-117 40-110 (197)
164 3rfe_A Platelet glycoprotein I 94.9 0.024 8.2E-07 43.0 4.1 55 9-70 11-68 (130)
165 2lz0_A Uncharacterized protein 66.3 5.5 0.00019 28.1 3.5 48 15-67 5-53 (100)
166 2lz0_A Uncharacterized protein 39.6 16 0.00054 25.7 2.2 36 4-40 18-53 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=5.7e-26 Score=208.05 Aligned_cols=280 Identities=18% Similarity=0.202 Sum_probs=152.9
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
++++|+.|+++++.+..++. +..+++|++|++++| .++.++. +..+++|++|++++|.++.++ .+..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n----~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGN----QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred hcccccEEEEeCCccccchh--hhhcCCccEEEccCC----ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 34566677777666666554 566667777777766 5555555 566666677776666666554 466666666
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++. +..+++|++|++.+|..... +..+..+++|+.|+++++.....+.+...
T Consensus 114 ~L~l~~-n~i~~~~~--~~~l~~L~~L~l~~n~~~~~--------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 176 (347)
T 4fmz_A 114 ELYLNE-DNISDISP--LANLTKMYSLNLGANHNLSD--------------LSPLSNMTGLNYLTVTESKVKDVTPIANL 176 (347)
T ss_dssp EEECTT-SCCCCCGG--GTTCTTCCEEECTTCTTCCC--------------CGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred EEECcC-CcccCchh--hccCCceeEEECCCCCCccc--------------ccchhhCCCCcEEEecCCCcCCchhhccC
Confidence 666666 45555554 56666666666666633111 11134444444444444433332221110
Q ss_pred ------------------ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCC
Q 040318 164 ------------------PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRS 225 (366)
Q Consensus 164 ------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~ 225 (366)
...+++|+.+++.++.. .....+..+++|++|+++++.+..+.. ...+++
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~~L~~L~l~~n~l~~~~~----------~~~l~~ 244 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKITDLSP----------LANLSQ 244 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--CCCGGGGGCTTCCEEECCSSCCCCCGG----------GTTCTT
T ss_pred CCCCEEEccCCcccccccccCCCccceeecccCCC--CCCchhhcCCcCCEEEccCCccCCCcc----------hhcCCC
Confidence 11223344555544443 111124455555555555555544332 135666
Q ss_pred CcEEeEecCCCCcccccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcC
Q 040318 226 LHLASIAFCSRVKDLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALP 305 (366)
Q Consensus 226 L~~L~l~~~~~l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 305 (366)
|+.|++++| .++.++.+..+++|++|++++|.... + + .+..+++|+.|++++|.-..........
T Consensus 245 L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 245 LTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQISD-I-S------------VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp CCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC-C-G------------GGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred CCEEECCCC-ccCCChhHhcCCCcCEEEccCCccCC-C-h------------hhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 677777666 56666656666677777776664322 2 1 4556777777777776433222233445
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCCCcceeEEE
Q 040318 306 LPQLKEIRVTQCPKLKTLPLNSSSTKLRNIVIS 338 (366)
Q Consensus 306 ~~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~ 338 (366)
+++|+.|++++|+ ++.++. +..+ ..+..++
T Consensus 310 l~~L~~L~L~~n~-l~~~~~-~~~l-~~L~~L~ 339 (347)
T 4fmz_A 310 LTNLTTLFLSQNH-ITDIRP-LASL-SKMDSAD 339 (347)
T ss_dssp CTTCSEEECCSSS-CCCCGG-GGGC-TTCSEES
T ss_pred cccCCEEEccCCc-cccccC-hhhh-hccceee
Confidence 7788888888775 555544 2222 4444443
No 2
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.8e-26 Score=212.67 Aligned_cols=295 Identities=16% Similarity=0.164 Sum_probs=192.3
Q ss_pred CCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCc-hhhhcCc
Q 040318 3 IRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLP-HELTALL 80 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~ 80 (366)
..+++++.|+++++.+..+|..++..+++|++|++++| .++.++. .+..+++|++|++++|.++.++ ..++.++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC----cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 45789999999999999999888899999999999999 7777754 6888999999999999988765 4578999
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccc
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNF 160 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 160 (366)
+|++|++++ +.+..+|.+++.++++|++|++++|.+.. ..+..+..+++|+.|+++++.....+
T Consensus 118 ~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~-- 181 (390)
T 3o6n_A 118 LLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLER-------------IEDDTFQATTSLQNLQLSSNRLTHVD-- 181 (390)
T ss_dssp TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCB-------------CCTTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred CCCEEECCC-CccCcCCHHHhcCCCCCcEEECCCCccCc-------------cChhhccCCCCCCEEECCCCcCCccc--
Confidence 999999999 78888888756889999999999997622 22345677889999999887765542
Q ss_pred cccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccC-----------ccccccccCCCCCcEE
Q 040318 161 LKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTG-----------EVQKVLQCGFRSLHLA 229 (366)
Q Consensus 161 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~-----------~~~~~p~~~~~~L~~L 229 (366)
...+++|+.+++.++... .+...++|+.|++.++.+..+...... .........+++|+.|
T Consensus 182 ---~~~l~~L~~L~l~~n~l~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L 253 (390)
T 3o6n_A 182 ---LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 253 (390)
T ss_dssp ---GGGCTTCSEEECCSSCCS-----EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred ---cccccccceeeccccccc-----ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEE
Confidence 122344666666554331 111223455555555444433220000 0000000345566666
Q ss_pred eEecCCCCccc--ccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCC
Q 040318 230 SIAFCSRVKDL--TWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLP 307 (366)
Q Consensus 230 ~l~~~~~l~~l--~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 307 (366)
++++| .++.+ ..+..+++|++|++++|.... + ......+++|++|+++++ .++.++.....++
T Consensus 254 ~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~ 318 (390)
T 3o6n_A 254 DLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVA-L------------NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD 318 (390)
T ss_dssp ECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCE-E------------ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred ECCCC-cCCCcChhHccccccCCEEECCCCcCcc-c------------CcccCCCCCCCEEECCCC-cceecCccccccC
Confidence 66665 34443 234456666666666554322 1 113456788888888876 4555555555678
Q ss_pred CccEEeccCCCCCCCCCCCCCCCCcceeEEEcchhhh
Q 040318 308 QLKEIRVTQCPKLKTLPLNSSSTKLRNIVISGGKDWW 344 (366)
Q Consensus 308 ~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~~~~~~~ 344 (366)
+|+.|++++|+ ++.+|. ... ..++.++...+.|
T Consensus 319 ~L~~L~L~~N~-i~~~~~--~~~-~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 319 RLENLYLDHNS-IVTLKL--STH-HTLKNLTLSHNDW 351 (390)
T ss_dssp TCSEEECCSSC-CCCCCC--CTT-CCCSEEECCSSCE
T ss_pred cCCEEECCCCc-cceeCc--hhh-ccCCEEEcCCCCc
Confidence 88888888874 666652 233 4566665554433
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.6e-25 Score=208.54 Aligned_cols=278 Identities=15% Similarity=0.117 Sum_probs=195.1
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchh-hhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHE-LTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~ 83 (366)
++++.|++++|.+..+++..|..+++|++|++++| .++.+ |..+.++++|++|++++|.++.+|.. +.++++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN----IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC----ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 57889999999998887666889999999999999 67776 66788899999999999988877754 67889999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++...+..+++|++|++.+|.+.. ..+..+..+++|+.|+++++.....+.. .
T Consensus 108 ~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~ 171 (477)
T 2id5_A 108 KLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVY-------------ISHRAFSGLNSLEQLTLEKCNLTSIPTE--A 171 (477)
T ss_dssp EEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCE-------------ECTTSSTTCTTCCEEEEESCCCSSCCHH--H
T ss_pred EEECCC-CccccCChhHccccccCCEEECCCCccce-------------eChhhccCCCCCCEEECCCCcCcccChh--H
Confidence 999988 66766655448889999999998887621 2234567788888888888766554321 1
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccc-cceeeccccCccccccccCCCCCcEEeEecCCCCcccc-
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSN-LEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT- 241 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~- 241 (366)
...+++|+.|++.++.........+..+++|+.|++.++. +..+..... ...+|+.|++++| .++.++
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~n-~l~~~~~ 241 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL---------YGLNLTSLSITHC-NLTAVPY 241 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT---------TTCCCSEEEEESS-CCCSCCH
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc---------cCccccEEECcCC-cccccCH
Confidence 1234568888888877633333366777888888887743 333332211 2347888888888 677766
Q ss_pred -cccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCCCCC
Q 040318 242 -WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCPKL 320 (366)
Q Consensus 242 -~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 320 (366)
.+..+++|++|+|++|....... ..+..+++|+.|+++++.--.........+++|+.|+++++ ++
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l 308 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEG------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QL 308 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECT------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CC
T ss_pred HHhcCccccCeeECCCCcCCccCh------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cC
Confidence 35678888888888776433221 14566778888888775332222334456778888888876 56
Q ss_pred CCCCCC
Q 040318 321 KTLPLN 326 (366)
Q Consensus 321 ~~lp~~ 326 (366)
+.+|..
T Consensus 309 ~~~~~~ 314 (477)
T 2id5_A 309 TTLEES 314 (477)
T ss_dssp SCCCGG
T ss_pred ceeCHh
Confidence 666654
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=7.7e-25 Score=200.52 Aligned_cols=274 Identities=16% Similarity=0.216 Sum_probs=204.0
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.+++|++|++++|.+.+++. +..+++|++|++++| .++.++. +..+++|++|++++|.+..++. +..+++|+
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n----~i~~~~~-~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN----KITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS----CCCCCGG-GTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hcCCccEEEccCCccccchh--hhcCCcCCEEEccCC----cccCchH-HcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence 58899999999999988877 788999999999999 7777754 8889999999999999888765 78889999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCcccccc-------ccccchHHHHHhhcCCCCcceEEEEeccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGS-------VLSEDAEPLMKELLCLKLLNLISFSLYSSRG 156 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 156 (366)
+|++++|.....++. +..+++|++|++.+|.+.....+.. ............+..+++|+.++++++....
T Consensus 136 ~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 136 SLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp EEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred EEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC
Confidence 999988656665554 7888888888888887643321100 0000000001114455666666666555444
Q ss_pred cccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCC
Q 040318 157 VRNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSR 236 (366)
Q Consensus 157 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~ 236 (366)
... ...+++|++|+++++.. .....+..+++|++|+++++.+..+.. + ..+++|+.|++++| .
T Consensus 214 ~~~----~~~~~~L~~L~l~~n~l--~~~~~~~~l~~L~~L~l~~n~l~~~~~--~--------~~l~~L~~L~l~~n-~ 276 (347)
T 4fmz_A 214 ITP----VANMTRLNSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISDINA--V--------KDLTKLKMLNVGSN-Q 276 (347)
T ss_dssp CGG----GGGCTTCCEEECCSSCC--CCCGGGTTCTTCCEEECCSSCCCCCGG--G--------TTCTTCCEEECCSS-C
T ss_pred Cch----hhcCCcCCEEEccCCcc--CCCcchhcCCCCCEEECCCCccCCChh--H--------hcCCCcCEEEccCC-c
Confidence 433 23456799999999887 333357889999999999988877532 2 47899999999999 7
Q ss_pred CcccccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccC
Q 040318 237 VKDLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQ 316 (366)
Q Consensus 237 l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 316 (366)
+++++.+..+++|++|++++|........ .+..+++|++|+++++. ++.+.. ...+++|+.|++++
T Consensus 277 l~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 277 ISDISVLNNLSQLNSLFLNNNQLGNEDME------------VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCGGGHH------------HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSC
T ss_pred cCCChhhcCCCCCCEEECcCCcCCCcChh------------HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhh
Confidence 88888888999999999999976544432 56789999999999986 555443 56799999999999
Q ss_pred CC
Q 040318 317 CP 318 (366)
Q Consensus 317 c~ 318 (366)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.2e-25 Score=216.01 Aligned_cols=293 Identities=16% Similarity=0.151 Sum_probs=184.9
Q ss_pred CCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCc
Q 040318 3 IRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALL 80 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~ 80 (366)
..+++++.++++++.+..+|..++..+++|++|++++| .++.++. .+..+++|++|++++|.++.+|. .+++++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC----CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 35678888999888888888887888899999999988 6777654 67888899999999988886654 468888
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccc
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNF 160 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 160 (366)
+|++|++++ +.+..+|..++.++++|++|++++|.+. ...+..+..+++|+.|+++++.....+
T Consensus 124 ~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-------------~~~~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 124 LLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-------------BCCTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred CCCEEEeeC-CCCCCCCHHHhccCCCCCEEEeeCCcCC-------------CCChhhhhcCCcCcEEECcCCCCCCcC--
Confidence 999999988 6778888775688889999999888762 122345677788888888877665542
Q ss_pred cccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeecccc-----------CccccccccCCCCCcEE
Q 040318 161 LKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCT-----------GEVQKVLQCGFRSLHLA 229 (366)
Q Consensus 161 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~-----------~~~~~~p~~~~~~L~~L 229 (366)
...+++|+.|++.++.. . .+...++|+.|+++++.+..+..... ...+......+++|+.|
T Consensus 188 ---~~~l~~L~~L~l~~n~l---~--~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L 259 (597)
T 3oja_B 188 ---LSLIPSLFHANVSYNLL---S--TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 259 (597)
T ss_dssp ---GGGCTTCSEEECCSSCC---S--EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred ---hhhhhhhhhhhcccCcc---c--cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEE
Confidence 12234466666655433 1 11222345555555544443332000 00000001345666666
Q ss_pred eEecCCCCccc--ccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCC
Q 040318 230 SIAFCSRVKDL--TWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLP 307 (366)
Q Consensus 230 ~l~~~~~l~~l--~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 307 (366)
++++| .++.+ ..++.+++|+.|+|++|.... +. .....+++|+.|+++++ .+..++.....++
T Consensus 260 ~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~------------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~ 324 (597)
T 3oja_B 260 DLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVA-LN------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFD 324 (597)
T ss_dssp ECCSS-CCCEEESGGGTTCSSCCEEECTTSCCCE-EE------------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred ECCCC-ccCCCCHHHhcCccCCCEEECCCCCCCC-CC------------cccccCCCCcEEECCCC-CCCccCcccccCC
Confidence 66666 34443 234556666666666554322 11 14455778888888776 3445555555678
Q ss_pred CccEEeccCCCCCCCCCCCCCCCCcceeEEEcchh
Q 040318 308 QLKEIRVTQCPKLKTLPLNSSSTKLRNIVISGGKD 342 (366)
Q Consensus 308 ~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~~~~~ 342 (366)
+|+.|++++|+ ++.+|. ..+ ..+..++...+
T Consensus 325 ~L~~L~L~~N~-l~~~~~--~~~-~~L~~L~l~~N 355 (597)
T 3oja_B 325 RLENLYLDHNS-IVTLKL--STH-HTLKNLTLSHN 355 (597)
T ss_dssp TCSEEECCSSC-CCCCCC--CTT-CCCSEEECCSS
T ss_pred CCCEEECCCCC-CCCcCh--hhc-CCCCEEEeeCC
Confidence 88888888874 665652 222 45555554444
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.3e-24 Score=198.74 Aligned_cols=278 Identities=16% Similarity=0.146 Sum_probs=206.0
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCchh-hhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPHE-LTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~ 81 (366)
.+++|++|++++|.+..++...+..+++|++|++++| .++.++ ..+..+++|++|++++|.++.+|.. +..+++
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN----AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCC----CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 4789999999999999988766999999999999999 778775 4578899999999999999988876 488999
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccc--cccc-cccchHHHHHhhcCCCCcceEEEEeccccccc
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAE--QGSV-LSEDAEPLMKELLCLKLLNLISFSLYSSRGVR 158 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 158 (366)
|++|++++ +.+..++...+..+++|++|++.+|.+..... +... .-.........+...+.|+.|+++++.....+
T Consensus 143 L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 143 LTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp CCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred CcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 99999999 77777766558899999999999997732210 0000 00000000011122344555555544444332
Q ss_pred cccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCc
Q 040318 159 NFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVK 238 (366)
Q Consensus 159 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~ 238 (366)
. ....+|+.|++.++.. .....+..+++|+.|+++++.+..+....+ ..+++|+.|++++| .++
T Consensus 222 ~-----~~~~~L~~L~l~~n~l--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n-~l~ 285 (390)
T 3o6n_A 222 G-----PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPF--------VKMQRLERLYISNN-RLV 285 (390)
T ss_dssp C-----CCCSSCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCEEESGGG--------TTCSSCCEEECCSS-CCC
T ss_pred c-----cccccccEEECCCCCC--cccHHHcCCCCccEEECCCCcCCCcChhHc--------cccccCCEEECCCC-cCc
Confidence 2 1235688999988877 333477889999999999999988765444 47899999999999 687
Q ss_pred cccc-ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCC
Q 040318 239 DLTW-LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQC 317 (366)
Q Consensus 239 ~l~~-l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 317 (366)
.++. ...+++|++|++++|... .+.. .+..+++|++|+++++. ++.+. ...+++|+.|+++++
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~------------~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHNHLL-HVER------------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGG------------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred ccCcccCCCCCCCEEECCCCcce-ecCc------------cccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCC
Confidence 7764 457899999999998643 3322 56678999999999874 44443 556899999999986
Q ss_pred C
Q 040318 318 P 318 (366)
Q Consensus 318 ~ 318 (366)
+
T Consensus 350 ~ 350 (390)
T 3o6n_A 350 D 350 (390)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.4e-24 Score=203.95 Aligned_cols=272 Identities=18% Similarity=0.184 Sum_probs=204.1
Q ss_pred CCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccC-chhhhcCc
Q 040318 3 IRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGL-PHELTALL 80 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l-~~~i~~l~ 80 (366)
.++++|++|++++|.+..+++..|.++++|++|++++| .++.+|.. +..+++|++|++++|.+..+ +..+..++
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN----RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS----CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC----cCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 36899999999999999886666999999999999999 78888764 67899999999999998854 56789999
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccc
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNF 160 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 160 (366)
+|++|++++ +.+..++...+.++++|++|++.+|.+.. .....+..+++|+.|+++++.....+..
T Consensus 129 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 129 NLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTS-------------IPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp TCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSS-------------CCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred cCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcc-------------cChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 999999999 77777765558899999999999997732 2245577889999999998776654321
Q ss_pred cccccccccccEEEEeccCCCCcCcc--chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCc
Q 040318 161 LKFPKLLRITQALSISDCEIPLLNVS--HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVK 238 (366)
Q Consensus 161 ~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~ 238 (366)
....+++|+.|+++++.. .... ......+|+.|++.++.++.+....+ ..+++|+.|++++| .++
T Consensus 195 --~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n-~l~ 261 (477)
T 2id5_A 195 --SFKRLYRLKVLEISHWPY--LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV--------RHLVYLRFLNLSYN-PIS 261 (477)
T ss_dssp --CSCSCTTCCEEEEECCTT--CCEECTTTTTTCCCSEEEEESSCCCSCCHHHH--------TTCTTCCEEECCSS-CCC
T ss_pred --hcccCcccceeeCCCCcc--ccccCcccccCccccEEECcCCcccccCHHHh--------cCccccCeeECCCC-cCC
Confidence 122345688999988776 3332 33344588888888888776654333 46788888888888 566
Q ss_pred ccc--cccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCC-CcCCCCccEEecc
Q 040318 239 DLT--WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG-ALPLPQLKEIRVT 315 (366)
Q Consensus 239 ~l~--~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~ 315 (366)
.++ .+..+++|++|+|++|........ .+..+++|+.|+++++ .++.+... ...+++|+.|+++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPY------------AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTT------------TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred ccChhhccccccCCEEECCCCccceECHH------------HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence 654 366788888888888764443222 5667888888888876 44444432 3457788888887
Q ss_pred CCC
Q 040318 316 QCP 318 (366)
Q Consensus 316 ~c~ 318 (366)
+++
T Consensus 329 ~N~ 331 (477)
T 2id5_A 329 SNP 331 (477)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.4e-24 Score=204.51 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=184.8
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcC-cc-CccccccccCCEEeccCCCCccC-chhhhcCccC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLT-EL-PSGISSLVSLQHLDVSYTDIRGL-PHELTALLNL 82 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~l-~~~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L 82 (366)
++|++|++++|.+..+++..+..+++|++|++++| .+. .+ +..+..+++|++|++++|.++.+ |..++++++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n----~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ----TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC----STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCC----cccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 57888888888888775555888888888888888 443 44 34577788888888888887754 6678888888
Q ss_pred CEeeccccccCCC-cC-hhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHH-hhcCCCCcceEEEEecccccccc
Q 040318 83 RYLNLERTYHLSR-FP-PELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMK-ELLCLKLLNLISFSLYSSRGVRN 159 (366)
Q Consensus 83 ~~L~L~~c~~~~~-l~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~ 159 (366)
++|++++ +.+.. ++ ...+..+++|++|++.+|.+... .+. .+..+++|+.|+++++.......
T Consensus 106 ~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 106 EVLTLTQ-CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI-------------QPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEEECTT-SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC-------------CCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CEEeCCC-CCCCccccCcccccCcccCCEEECCCCccCcc-------------CcccccCCCCcccEEeCCCCcccccCh
Confidence 8888888 45544 22 22367788888888888866222 111 25566777777776665443211
Q ss_pred --ccccc------------------------------cccccccEEEEeccCCCCcCccc--------------------
Q 040318 160 --FLKFP------------------------------KLLRITQALSISDCEIPLLNVSH-------------------- 187 (366)
Q Consensus 160 --~~~~~------------------------------~~~~~L~~L~l~~~~~~~~~~~~-------------------- 187 (366)
+.... ...++|++|+++++.........
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 11100 01123555555544331000000
Q ss_pred -----------------hh--hhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--cccCC
Q 040318 188 -----------------LA--YMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--WLAFA 246 (366)
Q Consensus 188 -----------------l~--~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~l~~l 246 (366)
+. ..++|+.|+++++.+..+....+ ..+++|+.|++++| .++.+. .+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l 322 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--------SHFTDLEQLTLAQN-EINKIDDNAFWGL 322 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--------TTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhhc--------ccCCCCCEEECCCC-cccccChhHhcCc
Confidence 11 11355555555555554433333 46788888888888 566643 46678
Q ss_pred CCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccc-cCCCcCCCCccEEeccCCCCCCCCCC
Q 040318 247 PNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSI-YQGALPLPQLKEIRVTQCPKLKTLPL 325 (366)
Q Consensus 247 ~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~ 325 (366)
++|++|++++|....... ..+..+++|++|+++++. ++.+ +.....+++|+.|+++++ +++.+|.
T Consensus 323 ~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 323 THLLKLNLSQNFLGSIDS------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp TTCCEEECCSSCCCEECG------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred ccCCEEECCCCccCCcCh------------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-ccccCCH
Confidence 888888888876533222 256678899999998874 4444 445667899999999986 6888876
Q ss_pred CCCCCCcceeEEEcchh
Q 040318 326 NSSSTKLRNIVISGGKD 342 (366)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ 342 (366)
........++.++....
T Consensus 389 ~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred hHhccCCcccEEEccCC
Confidence 54322255666654443
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.7e-23 Score=197.91 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=41.8
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.+++|++|++++|.+..+++ +..+++|++|++++| .+..++. +..+++|++|++++|.++.++. +.++++|+
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n----~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN----QIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLN 137 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCC----ccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence 34555555555555555444 455555555555555 4444444 5555555555555555554443 45555555
Q ss_pred Eeeccc
Q 040318 84 YLNLER 89 (366)
Q Consensus 84 ~L~L~~ 89 (366)
+|++++
T Consensus 138 ~L~l~~ 143 (466)
T 1o6v_A 138 RLELSS 143 (466)
T ss_dssp EEEEEE
T ss_pred EEECCC
Confidence 555555
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.2e-23 Score=189.57 Aligned_cols=216 Identities=15% Similarity=0.200 Sum_probs=104.6
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccC-chhhhcCccCCE
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGL-PHELTALLNLRY 84 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~ 84 (366)
+++.++++++.+..+|..+ .+.|++|++++| .++.++. .+..+++|++|++++|.++.+ |..+..+++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN----KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCC----cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 4555555555555555431 245555666655 4455433 355555566666655555544 445555555666
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|++++ +.+..+|.. +. ++|++|++.+|.+. ......+..+++|+.|+++++............
T Consensus 105 L~Ls~-n~l~~l~~~-~~--~~L~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 167 (330)
T 1xku_A 105 LYLSK-NQLKELPEK-MP--KTLQELRVHENEIT-------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167 (330)
T ss_dssp EECCS-SCCSBCCSS-CC--TTCCEEECCSSCCC-------------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred EECCC-CcCCccChh-hc--ccccEEECCCCccc-------------ccCHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence 66655 445555543 21 45555555555441 111233445555555555554443222222222
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--c
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--W 242 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~ 242 (366)
..+++|+.|+++++....... ...++|++|+++++.++.+....+ ..+++|+.|++++| .++.++ .
T Consensus 168 ~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n-~l~~~~~~~ 235 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASL--------KGLNNLAKLGLSFN-SISAVDNGS 235 (330)
T ss_dssp GGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCCEECTGGG--------TTCTTCCEEECCSS-CCCEECTTT
T ss_pred cCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCCccCHHHh--------cCCCCCCEEECCCC-cCceeChhh
Confidence 233445555555554311111 111455555555555554433222 24555566666555 344432 2
Q ss_pred ccCCCCccEEEEEccC
Q 040318 243 LAFAPNLKIIVIMHCD 258 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~ 258 (366)
+..+++|++|++++|.
T Consensus 236 ~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 236 LANTPHLRELHLNNNK 251 (330)
T ss_dssp GGGSTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCc
Confidence 4455556666665553
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.1e-23 Score=207.99 Aligned_cols=320 Identities=14% Similarity=0.119 Sum_probs=206.4
Q ss_pred CCCCcCEEEccCCCCCc------------------cchhhhh--cCCcccEEECCCCCCCCCcCccCccccccccCCEEe
Q 040318 4 RYSNIPSILELSSNNKV------------------FEPSWFL--SRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLD 63 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~------------------l~~~~~~--~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~ 63 (366)
++++|++|++++|.+.. +|.. +. ++++|++|++++|. ..+.+|..++++++|++|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCEEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCEEE
Confidence 68899999999999888 7877 66 89999999999994 3456788888899999999
Q ss_pred ccCCC-Cc--cCchhhhcC------ccCCEeeccccccCCCcCh--hhhcCCCCCcEEEccCCCCC-Ccccccc------
Q 040318 64 VSYTD-IR--GLPHELTAL------LNLRYLNLERTYHLSRFPP--ELICSFSKLEVLRMLESGAD-STAEQGS------ 125 (366)
Q Consensus 64 l~~~~-i~--~l~~~i~~l------~~L~~L~L~~c~~~~~l~~--~~l~~l~~L~~L~l~~~~~~-~~~~~~~------ 125 (366)
+++|+ ++ .+|..++.+ ++|++|++++ +.+..+|. . +.++++|++|++++|.+. ..+.++.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHH-HTTCTTCCEEECCSCCCEEECCCCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhh-hccCCCCCEEeCcCCcCccchhhhCCCCCCCE
Confidence 99997 77 478888776 8999999998 66778887 5 888999999999988775 3321110
Q ss_pred -cccc-chHHHHHhhcCCCC-cceEEEEecccccccccccccc------------------------------ccccccE
Q 040318 126 -VLSE-DAEPLMKELLCLKL-LNLISFSLYSSRGVRNFLKFPK------------------------------LLRITQA 172 (366)
Q Consensus 126 -~~~~-~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~------------------------------~~~~L~~ 172 (366)
.... .....+..+..+++ |+.|+++++....++....... ...+|+.
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 0000 00133344666677 8888887776655443211110 1123444
Q ss_pred EEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc-cc--CCCCc
Q 040318 173 LSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW-LA--FAPNL 249 (366)
Q Consensus 173 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~-l~--~l~~L 249 (366)
|+++++.........+..+++|+.|++++|.+..++...+.... .....+++|+.|++++| .++.++. +. .+++|
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L 515 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-ENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYL 515 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-EECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTC
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-ccccccCCccEEECcCC-cCCccChhhhhccCCCc
Confidence 44444443111111233355566666655555544332221000 00012237888888888 5667653 33 78888
Q ss_pred cEEEEEccCCcccccccccccccccccccccccccccccccccc------cccccccCCCcCCCCccEEeccCCCCCCCC
Q 040318 250 KIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA------ENLKSIYQGALPLPQLKEIRVTQCPKLKTL 323 (366)
Q Consensus 250 ~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l 323 (366)
++|+|++|.... +. ..+..+++|+.|+++++ .-...++.....+++|+.|++++|. ++.+
T Consensus 516 ~~L~Ls~N~l~~-ip------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~i 581 (636)
T 4eco_A 516 VGIDLSYNSFSK-FP------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKV 581 (636)
T ss_dssp CEEECCSSCCSS-CC------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBC
T ss_pred CEEECCCCCCCC-cC------------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCcc
Confidence 888888876543 32 26667899999999653 3344555566679999999999985 5888
Q ss_pred CCCCCCCCcceeEEEcchhhhcccc
Q 040318 324 PLNSSSTKLRNIVISGGKDWWEELQ 348 (366)
Q Consensus 324 p~~~~~~~~~~~~~~~~~~~~~~~~ 348 (366)
|..+. ..++.++...+.+..+.
T Consensus 582 p~~~~---~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 582 NEKIT---PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSCCC---TTCCEEECCSCTTCEEE
T ss_pred CHhHh---CcCCEEECcCCCCcccc
Confidence 88754 46777776666555443
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=5.4e-24 Score=193.81 Aligned_cols=261 Identities=16% Similarity=0.177 Sum_probs=135.2
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccC-chhhhcCccCCE
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGL-PHELTALLNLRY 84 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~ 84 (366)
+++.++++++++..+|..+ .++|++|++++| .++.++ ..+..+++|++|++++|.++.+ |..+..+++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN----DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCC----cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 4666666666666666542 356666666666 555553 3456666666666666666644 455666666666
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|++++ +.+..+|.. +. ++|++|++.+|.+... ....+..+++|+.|+++++............
T Consensus 107 L~L~~-n~l~~l~~~-~~--~~L~~L~l~~n~i~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 107 LYISK-NHLVEIPPN-LP--SSLVELRIHDNRIRKV-------------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp EECCS-SCCCSCCSS-CC--TTCCEEECCSSCCCCC-------------CSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred EECCC-CcCCccCcc-cc--ccCCEEECCCCccCcc-------------CHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 66666 555566554 22 5666666666655211 1223455666666666655543221111111
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--c
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--W 242 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~ 242 (366)
..+ +|+.|+++++....... ...++|+.|+++++.++.+....+ ..+++|+.|++++| .++.++ .
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l--------~~l~~L~~L~L~~N-~l~~~~~~~ 236 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDL--------LRYSKLYRLGLGHN-QIRMIENGS 236 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSS--------TTCTTCSCCBCCSS-CCCCCCTTG
T ss_pred cCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCCcCCccCHHHh--------cCCCCCCEEECCCC-cCCcCChhH
Confidence 111 35566655554411111 112456666666665555443322 24556666666666 454443 2
Q ss_pred ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCc-------CCCCccEEecc
Q 040318 243 LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGAL-------PLPQLKEIRVT 315 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~ 315 (366)
+..+++|++|++++|... .+.. .+..+++|++|+++++ .++.+..... ..++|+.|++.
T Consensus 237 ~~~l~~L~~L~L~~N~l~-~lp~------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLS-RVPA------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp GGGCTTCCEEECCSSCCC-BCCT------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred hhCCCCCCEEECCCCcCe-ecCh------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee
Confidence 455666666666655432 2211 3445566666666653 2333321110 13456666666
Q ss_pred CCC
Q 040318 316 QCP 318 (366)
Q Consensus 316 ~c~ 318 (366)
++|
T Consensus 303 ~N~ 305 (332)
T 2ft3_A 303 NNP 305 (332)
T ss_dssp SSS
T ss_pred cCc
Confidence 654
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.4e-23 Score=204.20 Aligned_cols=278 Identities=16% Similarity=0.143 Sum_probs=206.6
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCchh-hhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPHE-LTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~ 81 (366)
.+++|++|++++|.+..+++..|..+++|++|++++| .++.++. .++.+++|++|++++|.++.+|.. ++.+++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN----AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC----cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence 4789999999999999988766999999999999999 7787765 468899999999999999988876 489999
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccc--cccc-cccchHHHHHhhcCCCCcceEEEEeccccccc
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAE--QGSV-LSEDAEPLMKELLCLKLLNLISFSLYSSRGVR 158 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 158 (366)
|++|++++ +.+..++...+..+++|++|++++|.+..... +... .-......+..+.....|+.|+++++....++
T Consensus 149 L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 149 LTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred CCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 99999999 67777776558999999999999997733210 0000 00000000111223344555555554444333
Q ss_pred cccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCc
Q 040318 159 NFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVK 238 (366)
Q Consensus 159 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~ 238 (366)
.. ...+|+.|+++++.. .....+..+++|+.|++++|.+..+....+ ..+++|+.|++++| .++
T Consensus 228 ~~-----~~~~L~~L~L~~n~l--~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~Ls~N-~l~ 291 (597)
T 3oja_B 228 GP-----VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPF--------VKMQRLERLYISNN-RLV 291 (597)
T ss_dssp CS-----CCSCCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCEEESGGG--------TTCSSCCEEECTTS-CCC
T ss_pred cc-----cCCCCCEEECCCCCC--CCChhhccCCCCCEEECCCCccCCCCHHHh--------cCccCCCEEECCCC-CCC
Confidence 21 224688999988877 444478889999999999999988765444 47899999999999 788
Q ss_pred cccc-ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCC
Q 040318 239 DLTW-LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQC 317 (366)
Q Consensus 239 ~l~~-l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 317 (366)
.++. ...+++|+.|+|++|... .+.. .+..+++|+.|+++++. +..+. ...+++|+.|+++++
T Consensus 292 ~l~~~~~~l~~L~~L~Ls~N~l~-~i~~------------~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 292 ALNLYGQPIPTLKVLDLSHNHLL-HVER------------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGG------------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred CCCcccccCCCCcEEECCCCCCC-ccCc------------ccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCC
Confidence 7764 446999999999998754 3322 56789999999999874 44443 556899999999987
Q ss_pred C
Q 040318 318 P 318 (366)
Q Consensus 318 ~ 318 (366)
+
T Consensus 356 ~ 356 (597)
T 3oja_B 356 D 356 (597)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.2e-23 Score=197.89 Aligned_cols=290 Identities=14% Similarity=0.139 Sum_probs=209.2
Q ss_pred CCCCCcCEEEccCCCCC-ccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCcc-Cchh--hh
Q 040318 3 IRYSNIPSILELSSNNK-VFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRG-LPHE--LT 77 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~-l~~~--i~ 77 (366)
.++++|++|++++|.+. .+++..|..+++|++|++++| .+..+ |..+..+++|++|++++|.++. .+.. +.
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN----QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC----TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCC----ccCccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence 37899999999999886 576666999999999999999 67765 6778899999999999998874 3443 88
Q ss_pred cCccCCEeeccccccCCCc-ChhhhcCCCCCcEEEccCCCCCCccc--ccc--------------cccc-----chHHHH
Q 040318 78 ALLNLRYLNLERTYHLSRF-PPELICSFSKLEVLRMLESGADSTAE--QGS--------------VLSE-----DAEPLM 135 (366)
Q Consensus 78 ~l~~L~~L~L~~c~~~~~l-~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~--------------~~~~-----~~~~~~ 135 (366)
.+++|++|++++ +.+..+ |...+.++++|++|++.+|.+..... +.. .... ......
T Consensus 127 ~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 127 PLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TCTTCCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred CcccCCEEECCC-CccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 899999999999 667666 54447889999999999997643320 000 0000 000111
Q ss_pred HhhcCCCCcceEEEEeccccccc--ccc-----------------------------------ccccccccccEEEEecc
Q 040318 136 KELLCLKLLNLISFSLYSSRGVR--NFL-----------------------------------KFPKLLRITQALSISDC 178 (366)
Q Consensus 136 ~~l~~l~~L~~L~l~~~~~~~~~--~~~-----------------------------------~~~~~~~~L~~L~l~~~ 178 (366)
..+..+++|+.|+++++...... .+. ......++|+.|+++++
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 12234467777777766443210 000 00001246889999888
Q ss_pred CCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--cccCCCCccEEEEEc
Q 040318 179 EIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--WLAFAPNLKIIVIMH 256 (366)
Q Consensus 179 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~L~~ 256 (366)
.........+..+++|+.|+++++.+..+....+ ..+++|+.|++++| .++.+. .+..+++|++|++++
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--------WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--------TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHh--------cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC
Confidence 7733333368889999999999999988766544 47899999999999 677753 467899999999999
Q ss_pred cCCcccccccccccccccccccccccccccccccccccccccccCC-CcCCCCccEEeccCCCC
Q 040318 257 CDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG-ALPLPQLKEIRVTQCPK 319 (366)
Q Consensus 257 c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~ 319 (366)
|........ .+..+++|++|+++++ .++.++.. ...+++|+.|++++++-
T Consensus 357 N~l~~~~~~------------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 357 NHIRALGDQ------------SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp SCCCEECTT------------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcccccChh------------hccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 975443222 6778999999999986 55566544 35789999999998753
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=6.9e-23 Score=197.73 Aligned_cols=104 Identities=17% Similarity=0.087 Sum_probs=78.2
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..+..+++|++|++++|.++.+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN----RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS----CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC----ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccE
Confidence 57888888888888777655788888888888888 66665 55677788888888888887777765 6788888
Q ss_pred eeccccccCCC--cChhhhcCCCCCcEEEccCCCC
Q 040318 85 LNLERTYHLSR--FPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 85 L~L~~c~~~~~--l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
|++++ +.+.. +|.. +.++++|++|++++|.+
T Consensus 95 L~L~~-N~l~~~~~p~~-~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 95 LDLSF-NAFDALPICKE-FGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp EECCS-SCCSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred EeccC-Cccccccchhh-hccCCcceEEEecCccc
Confidence 88887 55554 4444 77788888887777765
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.4e-23 Score=211.80 Aligned_cols=304 Identities=11% Similarity=0.120 Sum_probs=211.8
Q ss_pred CCCCcCEEEccCCCCCc-cchhhhhcCCcccEEECCCCCCCCC-cCc--cCccccccc-------cCCEEeccCCCCccC
Q 040318 4 RYSNIPSILELSSNNKV-FEPSWFLSRASWTCLDNGPSRIKNS-LTE--LPSGISSLV-------SLQHLDVSYTDIRGL 72 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~-~~~--l~~~~~~l~-------~L~~L~l~~~~i~~l 72 (366)
++++|++|++++|.+.. +|.. +.++++|++|++++| . ++. +|..++.+. +|++|++++|.++.+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N----~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACN----RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTC----TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCC----CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 68999999999998664 6765 899999999999999 5 664 777666555 999999999999999
Q ss_pred ch--hhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCC-cceEEE
Q 040318 73 PH--ELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKL-LNLISF 149 (366)
Q Consensus 73 ~~--~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l 149 (366)
|. .++++++|++|++++ +.+..+| . +..+++|++|++++|.+.. .+..+..+++ |+.|++
T Consensus 564 p~~~~l~~L~~L~~L~Ls~-N~l~~lp-~-~~~L~~L~~L~Ls~N~l~~--------------lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVH-NKVRHLE-A-FGTNVKLTDLKLDYNQIEE--------------IPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp CCHHHHTTCTTCCEEECTT-SCCCBCC-C-CCTTSEESEEECCSSCCSC--------------CCTTSCEECTTCCEEEC
T ss_pred CChhhhhcCCCCCEEECCC-CCcccch-h-hcCCCcceEEECcCCcccc--------------chHHHhhccccCCEEEC
Confidence 98 899999999999999 6777888 4 8999999999999997732 2334555555 666666
Q ss_pred Eeccccccccccccc--------------------------c--ccccccEEEEeccCCCCcCccchhhhcccCceEecc
Q 040318 150 SLYSSRGVRNFLKFP--------------------------K--LLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDN 201 (366)
Q Consensus 150 ~~~~~~~~~~~~~~~--------------------------~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 201 (366)
+++....++...... . ...+|+.|+++++.........+..+++|+.|++++
T Consensus 627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred cCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 665554433221110 0 112466666666655211111334667788888887
Q ss_pred cccceeeccccCccccccccCCCCCcEEeEecCCCCccccc-cc--CCCCccEEEEEccCCccccccccccccccccccc
Q 040318 202 SNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW-LA--FAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGE 278 (366)
Q Consensus 202 ~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~-l~--~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~ 278 (366)
|.+..++........ .....+++|+.|++++| .++.++. +. .+++|+.|+|++|.... +. ..
T Consensus 707 N~L~~ip~~~~~~~~-~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp------------~~ 771 (876)
T 4ecn_A 707 NLMTSIPENSLKPKD-GNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP------------TQ 771 (876)
T ss_dssp CCCSCCCTTSSSCTT-SCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSS-CC------------CG
T ss_pred CcCCccChHHhcccc-ccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCc-cc------------hh
Confidence 777755543321000 00023448999999998 6777763 43 78999999999886543 32 25
Q ss_pred cccccccccccccccc------ccccccCCCcCCCCccEEeccCCCCCCCCCCCCCCCCcceeEEEcchhhhcccc
Q 040318 279 LNFFAKLELLDLYHAE------NLKSIYQGALPLPQLKEIRVTQCPKLKTLPLNSSSTKLRNIVISGGKDWWEELQ 348 (366)
Q Consensus 279 ~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 348 (366)
+..+++|+.|+++++. -...++.....+++|+.|++++|. ++.+|..+. ..+..++...+.+..+.
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~---~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT---PQLYILDIADNPNISID 843 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC---SSSCEEECCSCTTCEEE
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc---CCCCEEECCCCCCCccC
Confidence 6689999999997633 344555566679999999999985 588988754 46777776666555443
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=3.7e-23 Score=203.30 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=85.7
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCc-hhhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLP-HELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~~ 81 (366)
++++|++|++++|.+..+++..|.++++|++|++++| .+..+ |..+.++++|++|++++|.++.++ ..++++++
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n----~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN----PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC----CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC----cccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 6788888888888888876665788888888888888 66666 666788888888888888887665 56788888
Q ss_pred CCEeeccccccCC--CcChhhhcCCCCCcEEEccCCCCC
Q 040318 82 LRYLNLERTYHLS--RFPPELICSFSKLEVLRMLESGAD 118 (366)
Q Consensus 82 L~~L~L~~c~~~~--~l~~~~l~~l~~L~~L~l~~~~~~ 118 (366)
|++|++++ +.+. .+|.. +.++++|++|++++|.+.
T Consensus 130 L~~L~L~~-n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 130 LKKLNVAH-NFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCEEECCS-SCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred CCEEeCCC-CcccceechHh-HhhcCCCCEEEccCCcce
Confidence 88888888 5555 35665 888888888888888654
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.4e-23 Score=195.85 Aligned_cols=283 Identities=17% Similarity=0.174 Sum_probs=181.6
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
+++++.|++.++.+..++. +..+++|++|++++| .++.++. +..+++|++|++++|.+..++. +.++++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n----~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN----QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hccccEEecCCCCCccCcc--hhhhcCCCEEECCCC----ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 5789999999999998876 788999999999999 7888877 8899999999999999998876 899999999
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|++++ +.+..++. +..+++|++|++++|.+... ..+..+++|+.|.+.. .......+
T Consensus 117 L~L~~-n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~l~~-~~~~~~~~---- 173 (466)
T 1o6v_A 117 LTLFN-NQITDIDP--LKNLTNLNRLELSSNTISDI---------------SALSGLTSLQQLSFGN-QVTDLKPL---- 173 (466)
T ss_dssp EECCS-SCCCCCGG--GTTCTTCSEEEEEEEEECCC---------------GGGTTCTTCSEEEEEE-SCCCCGGG----
T ss_pred EECCC-CCCCCChH--HcCCCCCCEEECCCCccCCC---------------hhhccCCcccEeecCC-cccCchhh----
Confidence 99999 67888876 89999999999999976332 1245555555555542 22221111
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccC--------------ccccccccCCCCCcEEe
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTG--------------EVQKVLQCGFRSLHLAS 230 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~--------------~~~~~p~~~~~~L~~L~ 230 (366)
..+++|+.|+++++.. .....+..+++|++|++.++.+..+.. .+ ....-....+++|+.|+
T Consensus 174 ~~l~~L~~L~l~~n~l--~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 174 ANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249 (466)
T ss_dssp TTCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred ccCCCCCEEECcCCcC--CCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEE
Confidence 1223355555554443 111134444455555554444332211 00 00000002455666666
Q ss_pred EecCCCCcccccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCcc
Q 040318 231 IAFCSRVKDLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLK 310 (366)
Q Consensus 231 l~~~~~l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 310 (366)
+++| .++.++.+..+++|++|++++|...... .+..+++|+.|+++++. ++.+.. ...+++|+
T Consensus 250 l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~ 312 (466)
T 1o6v_A 250 LANN-QISNLAPLSGLTKLTELKLGANQISNIS--------------PLAGLTALTNLELNENQ-LEDISP-ISNLKNLT 312 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCG--------------GGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCS
T ss_pred CCCC-ccccchhhhcCCCCCEEECCCCccCccc--------------cccCCCccCeEEcCCCc-ccCchh-hcCCCCCC
Confidence 6666 4555555556666666666655432211 35567888888888763 434332 45688999
Q ss_pred EEeccCCCCCCCCCCCCCCCCcceeEEEcchh
Q 040318 311 EIRVTQCPKLKTLPLNSSSTKLRNIVISGGKD 342 (366)
Q Consensus 311 ~L~l~~c~~l~~lp~~~~~~~~~~~~~~~~~~ 342 (366)
.|++++| +++.++. +..+ ..++.++....
T Consensus 313 ~L~L~~n-~l~~~~~-~~~l-~~L~~L~l~~n 341 (466)
T 1o6v_A 313 YLTLYFN-NISDISP-VSSL-TKLQRLFFYNN 341 (466)
T ss_dssp EEECCSS-CCSCCGG-GGGC-TTCCEEECCSS
T ss_pred EEECcCC-cCCCchh-hccC-ccCCEeECCCC
Confidence 9999988 4665543 2233 55666655443
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=6.1e-23 Score=201.79 Aligned_cols=302 Identities=15% Similarity=0.074 Sum_probs=193.2
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccC-chhhhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGL-PHELTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~ 83 (366)
++|++|++++|.+..+++..|.++++|++|++++| .++.+ |..+.++++|++|++++|.++.+ |..++++++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC----EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC----CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC----cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 67999999999999988866999999999999999 77887 55688999999999999999876 77899999999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccc--cc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRN--FL 161 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~ 161 (366)
+|++++ +.+..++...+.++++|++|++++|.+... ..+..+..+++|+.|+++++....... +.
T Consensus 108 ~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 108 NLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSC------------KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp EEECTT-SCCCCSSSSCCTTCTTCCEEECCSSCCCCC------------CCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred EEEccC-CccccccccccCCCCCCCEEeCCCCcccce------------echHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 999999 677777744489999999999999987321 335667788888888888776544321 11
Q ss_pred cccc-----------------------ccccccEEEEeccCCCC------------------------------------
Q 040318 162 KFPK-----------------------LLRITQALSISDCEIPL------------------------------------ 182 (366)
Q Consensus 162 ~~~~-----------------------~~~~L~~L~l~~~~~~~------------------------------------ 182 (366)
.... ...+|+.|++.++....
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred hhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHH
Confidence 0000 01146666666654310
Q ss_pred -------------------cCc--cchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc
Q 040318 183 -------------------LNV--SHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT 241 (366)
Q Consensus 183 -------------------~~~--~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~ 241 (366)
... ..+..+++|+.+++.++.+..++ .. ..+++|+.|++.+| .++.++
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l--------~~~~~L~~L~l~~n-~l~~lp 323 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DV--------PKHFKWQSLSIIRC-QLKQFP 323 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CC--------CTTCCCSEEEEESC-CCSSCC
T ss_pred hhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hc--------cccccCCEEEcccc-cCcccc
Confidence 000 01334455555555554444333 11 34667777777777 446666
Q ss_pred cccCCCCccEEEEEccCCcccccccccccc----------ccc---ccccccccccccccccccccccccccCCCcCCCC
Q 040318 242 WLAFAPNLKIIVIMHCDDLEEIISVEKLNQ----------LSD---IMGELNFFAKLELLDLYHAENLKSIYQGALPLPQ 308 (366)
Q Consensus 242 ~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 308 (366)
.+ .+++|++|++++|........ ..... +.. ....+..+++|++|+++++. +..++.....+++
T Consensus 324 ~~-~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEE 400 (606)
T ss_dssp CC-CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTT
T ss_pred cC-CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCC
Confidence 55 667777777776644332210 00000 000 02234456667777776653 4444444556777
Q ss_pred ccEEeccCCCCCCCC-C-CCCCCCCcceeEEEcc
Q 040318 309 LKEIRVTQCPKLKTL-P-LNSSSTKLRNIVISGG 340 (366)
Q Consensus 309 L~~L~l~~c~~l~~l-p-~~~~~~~~~~~~~~~~ 340 (366)
|+.|++++|. ++.+ | ..+..+ ..++.++..
T Consensus 401 L~~L~l~~n~-l~~~~~~~~~~~l-~~L~~L~l~ 432 (606)
T 3vq2_A 401 LQHLDFQHST-LKRVTEFSAFLSL-EKLLYLDIS 432 (606)
T ss_dssp CCEEECTTSE-EESTTTTTTTTTC-TTCCEEECT
T ss_pred CCeeECCCCc-cCCccChhhhhcc-ccCCEEECc
Confidence 7888877764 3333 3 233333 455555544
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=198.27 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=80.9
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCch-hhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPH-ELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~ 81 (366)
.+++|++|++++|.+..+++..|.++++|++|++++| .++.++ ..+..+++|++|++++|+++.++. .++++++
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN----PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC----CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC----cCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 5777888888888777776666777888888888888 666654 457777888888888887776654 4777888
Q ss_pred CCEeeccccccCCC--cChhhhcCCCCCcEEEccCCCCC
Q 040318 82 LRYLNLERTYHLSR--FPPELICSFSKLEVLRMLESGAD 118 (366)
Q Consensus 82 L~~L~L~~c~~~~~--l~~~~l~~l~~L~~L~l~~~~~~ 118 (366)
|++|++++ +.+.. +|.. +.++++|++|++.+|.+.
T Consensus 126 L~~L~L~~-n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 126 LKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred ccEEecCC-CccceecChhh-hcccCCCCEEeCcCCccc
Confidence 88888887 55554 5665 778888888888877653
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=4.1e-23 Score=195.77 Aligned_cols=285 Identities=16% Similarity=0.102 Sum_probs=175.9
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
++++|++|+++++.+..+| . +..+++|++|++++| .++.+| ++.+++|++|++++|.++.++ ++.+++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n----~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSN----NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSS----CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred HcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCC----cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 4789999999999999887 3 889999999999999 777776 788999999999999988875 78899999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++ +..+++|++|++.+|.+... .+..+++|+.|+++.+.....-.
T Consensus 110 ~L~L~~-N~l~~l~---~~~l~~L~~L~l~~N~l~~l----------------~l~~l~~L~~L~l~~n~~~~~~~---- 165 (457)
T 3bz5_A 110 YLNCDT-NKLTKLD---VSQNPLLTYLNCARNTLTEI----------------DVSHNTQLTELDCHLNKKITKLD---- 165 (457)
T ss_dssp EEECCS-SCCSCCC---CTTCTTCCEEECTTSCCSCC----------------CCTTCTTCCEEECTTCSCCCCCC----
T ss_pred EEECCC-CcCCeec---CCCCCcCCEEECCCCcccee----------------ccccCCcCCEEECCCCCcccccc----
Confidence 999999 6777774 67899999999999877321 24556666666666553211111
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccc
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWL 243 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l 243 (366)
...+++|+.|+++++.... ..+..+++|+.|++.++.++.+.. ..+++|+.|++++| .++.++ +
T Consensus 166 ~~~l~~L~~L~ls~n~l~~---l~l~~l~~L~~L~l~~N~l~~~~l-----------~~l~~L~~L~Ls~N-~l~~ip-~ 229 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLDL-----------NQNIQLTFLDCSSN-KLTEID-V 229 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC---CCCTTCTTCCEEECCSSCCSCCCC-----------TTCTTCSEEECCSS-CCSCCC-C
T ss_pred cccCCcCCEEECCCCccce---eccccCCCCCEEECcCCcCCeecc-----------ccCCCCCEEECcCC-cccccC-c
Confidence 1123446666666655421 234555666666666655554422 34555555555555 444444 4
Q ss_pred cCCCCccEEEEEccCCcccccc-------------------cccccccccccccccccccccccccccccccccccCC--
Q 040318 244 AFAPNLKIIVIMHCDDLEEIIS-------------------VEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG-- 302 (366)
Q Consensus 244 ~~l~~L~~L~L~~c~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-- 302 (366)
+.+++|++|++++|........ ...+.....+ ....+++|+.|+++++..++.++..
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~--~~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF--QAEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE--ECTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred cccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc--cccccccCCEEECCCCcccceeccCCC
Confidence 4555555555555443221100 0000000001 2345688888888887766555431
Q ss_pred ------CcCCCCccEEeccCCCCCCCCCCCCCCCCcceeEEEcchhhh
Q 040318 303 ------ALPLPQLKEIRVTQCPKLKTLPLNSSSTKLRNIVISGGKDWW 344 (366)
Q Consensus 303 ------~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~~~~~~~ 344 (366)
...+++|+.|+++++ +++.++ +... ..++.++......
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l-~~L~~L~l~~N~l 351 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNT-ELTELD--VSHN-TKLKSLSCVNAHI 351 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTC-TTCSEEECCSSCC
T ss_pred cceEechhhcccCCEEECCCC-cccccc--cccC-CcCcEEECCCCCC
Confidence 223455556665554 455543 2233 5566666554433
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.7e-23 Score=205.66 Aligned_cols=279 Identities=16% Similarity=0.152 Sum_probs=215.1
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccC-chhhhcCccCCEe
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGL-PHELTALLNLRYL 85 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~L 85 (366)
+|+.|++++|.+..++...|..+++|++|++++| .++.+|..+..+++|++|++++|.++.+ |..+..+++|++|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT----HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS----CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC----ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 7889999999999988888999999999999999 7889999899999999999999998866 5688999999999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPK 165 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 165 (366)
++++|.....++.+.+..+++|++|++++|.+... ...+..+..+++|+.|+++++....... ....
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~ 397 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETS-----------DCCNLQLRNLSHLQSLNLSYNEPLSLKT--EAFK 397 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE-----------EESTTTTTTCTTCCEEECCSCSCEEECT--TTTT
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccc-----------cCcchhcccCCCCCEEECCCCcCCcCCH--HHhc
Confidence 99995444467766588999999999999977221 1114467888999999999877654321 1223
Q ss_pred ccccccEEEEeccCCCCcCcc-chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcc--c--
Q 040318 166 LLRITQALSISDCEIPLLNVS-HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKD--L-- 240 (366)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~--l-- 240 (366)
.+++|+.|+++++........ .+..+++|+.|+++++.+.......+ ..+++|+.|++++| .++. +
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~L~~n-~l~~~~~~~ 468 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--------DGLPALQHLNLQGN-HFPKGNIQK 468 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--------TTCTTCCEEECTTC-BCGGGEECS
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--------hCCCCCCEEECCCC-CCCcccccc
Confidence 356799999998876322222 47888999999999988876554444 46899999999999 4544 2
Q ss_pred -ccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCCCC
Q 040318 241 -TWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCPK 319 (366)
Q Consensus 241 -~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 319 (366)
..+..+++|++|++++|........ .+..+++|++|+++++.-....+.....++.| .|+++++ +
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~ 534 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQH------------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-H 534 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTT------------TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-C
T ss_pred chhhccCCCccEEECCCCccCccChh------------hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-c
Confidence 2467899999999999875543322 66788999999999875444444455668889 9999987 5
Q ss_pred CCCCCC
Q 040318 320 LKTLPL 325 (366)
Q Consensus 320 l~~lp~ 325 (366)
++.+|.
T Consensus 535 l~~~~~ 540 (606)
T 3t6q_A 535 ISIILP 540 (606)
T ss_dssp CCCCCG
T ss_pred ccccCH
Confidence 665554
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=2.4e-22 Score=195.86 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=89.1
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
++|+.|++++|.+..+++..|..+++|++|++++| .++.+ |..+..+++|++|++++|.++.+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN----RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC----CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC----CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCE
Confidence 68999999999999888766899999999999999 77776 56688899999999999999888876 7899999
Q ss_pred eeccccccCCCcCh-hhhcCCCCCcEEEccCCCC
Q 040318 85 LNLERTYHLSRFPP-ELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 85 L~L~~c~~~~~l~~-~~l~~l~~L~~L~l~~~~~ 117 (366)
|++++ +.+..++. ..+.++++|++|++++|.+
T Consensus 126 L~Ls~-N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 126 LDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp EECCS-SCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred EECCC-CCccccCchHhhcccCcccEEecCCCcc
Confidence 99999 67776552 2388999999999999876
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.5e-22 Score=198.88 Aligned_cols=106 Identities=13% Similarity=0.008 Sum_probs=56.4
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccC-chhhhcCccCCE
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGL-PHELTALLNLRY 84 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~ 84 (366)
++++|++++|.+..+++..|.++++|++|++++| .+..+ |..+.++++|++|++++|.++.+ |..++++++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC----QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC----CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCC----ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 4555666666555554444555666666666665 44443 34455555666666665555433 445555555555
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
|++++ +.+..++...+.++++|++|++++|.+
T Consensus 110 L~L~~-n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 110 LFFIQ-TGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp EECTT-SCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred eeccc-cCcccCCcchhccCCcccEEECCCCcc
Confidence 55555 444444222245555555555555544
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2.2e-23 Score=210.26 Aligned_cols=273 Identities=16% Similarity=0.140 Sum_probs=126.6
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCc-cCccccccccCCEEeccCCCCc-cCchhhhcC-c
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTE-LPSGISSLVSLQHLDVSYTDIR-GLPHELTAL-L 80 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~i~-~l~~~i~~l-~ 80 (366)
++++|++|++++|.+....+..+..+++|++|++++| .+.. +|. . .+++|++|++++|.++ .+|..+... +
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n----~l~~~~~~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN----QFVGPIPP-L-PLKSLQYLSLAENKFTGEIPDFLSGACD 294 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS----CCEESCCC-C-CCTTCCEEECCSSEEEESCCCCSCTTCT
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC----cccCccCc-c-ccCCCCEEECcCCccCCccCHHHHhhcC
Confidence 3455555555555554322222555555555555555 3322 222 1 3444555555555444 455555443 7
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHH-HHhhcCCCCcceEEEEecccc-ccc
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPL-MKELLCLKLLNLISFSLYSSR-GVR 158 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~-~~~ 158 (366)
+|++|++++|.....+|.. +.++++|++|++.+|.+. ... ...+..+++|+.|+++++... ..+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-------------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFS-------------GELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp TCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEE-------------EECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred cCCEEECcCCcCCCccchH-HhcCCCccEEECCCCccc-------------CcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 7777777773322245554 677777777777777541 011 122455556666655554332 111
Q ss_pred cc-ccc-----------------------ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCc
Q 040318 159 NF-LKF-----------------------PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGE 214 (366)
Q Consensus 159 ~~-~~~-----------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~ 214 (366)
.. ... ...+++|+.|++.++...+..+..+..+++|+.|+++++.+.......+
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-- 438 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-- 438 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--
T ss_pred HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH--
Confidence 10 000 0002345555555554411111245556666666666655543222111
Q ss_pred cccccccCCCCCcEEeEecCCCCc-ccc-cccCCCCccEEEEEccCCccccccccccccccccccccccccccccccccc
Q 040318 215 VQKVLQCGFRSLHLASIAFCSRVK-DLT-WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYH 292 (366)
Q Consensus 215 ~~~~p~~~~~~L~~L~l~~~~~l~-~l~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (366)
..+++|+.|++++| .++ .++ .+..+++|++|++++|.....+.. .+..+++|++|++++
T Consensus 439 ------~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~------------~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 439 ------GSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPS------------GLSNCTNLNWISLSN 499 (768)
T ss_dssp ------GGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCS
T ss_pred ------hcCCCCCEEECCCC-cccCcCCHHHcCCCCceEEEecCCcccCcCCH------------HHhcCCCCCEEEccC
Confidence 23455555555555 233 222 234455555555555543322211 334445555555554
Q ss_pred ccccccccCCCcCCCCccEEeccCC
Q 040318 293 AENLKSIYQGALPLPQLKEIRVTQC 317 (366)
Q Consensus 293 ~~~l~~~~~~~~~~~~L~~L~l~~c 317 (366)
+.-...++.....+++|+.|++++|
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CccCCcCChHHhcCCCCCEEECCCC
Confidence 4333333333334455555555554
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=3.7e-23 Score=187.81 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=47.7
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEe
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYL 85 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L 85 (366)
++++.|+++++.+..+|.. +..+++|++|++++| .+..+|..++.+++|++|++++|.++.+|..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n----~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA----GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS----CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCC----CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 4555555555555555554 344555555555555 44455555555555555555555555555555555555555
Q ss_pred eccccccCCCcCh
Q 040318 86 NLERTYHLSRFPP 98 (366)
Q Consensus 86 ~L~~c~~~~~l~~ 98 (366)
++++|+....+|.
T Consensus 156 ~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 156 SIRACPELTELPE 168 (328)
T ss_dssp EEEEETTCCCCCS
T ss_pred ECCCCCCccccCh
Confidence 5555444444444
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=5.7e-23 Score=199.61 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=66.4
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCchh-hhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPHE-LTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~ 83 (366)
++|++|++++|.+..+++..|..+++|++|++++| .++.++ ..+..+++|++|++++|.++.++.. ++++++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS----RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC----CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 46777777777776654444667777777777777 555553 4466677777777777766655443 66677777
Q ss_pred EeeccccccCCC--cChhhhcCCCCCcEEEccCCC
Q 040318 84 YLNLERTYHLSR--FPPELICSFSKLEVLRMLESG 116 (366)
Q Consensus 84 ~L~L~~c~~~~~--l~~~~l~~l~~L~~L~l~~~~ 116 (366)
+|++++ +.+.. ++.. +.++++|++|++.+|.
T Consensus 102 ~L~Ls~-n~l~~~~~~~~-~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 102 YLNLMG-NPYQTLGVTSL-FPNLTNLQTLRIGNVE 134 (549)
T ss_dssp EEECTT-CCCSSSCSSCS-CTTCTTCCEEEEEESS
T ss_pred EEECCC-Ccccccchhhh-hhccCCccEEECCCCc
Confidence 777766 44443 2332 5666667777666664
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=2.8e-22 Score=195.34 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=89.8
Q ss_pred CCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccC--chhhhcCc
Q 040318 3 IRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGL--PHELTALL 80 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l--~~~i~~l~ 80 (366)
..+++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. .+++|++|++++|.++.+ |..+++++
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N----~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN----RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS----CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC----cCCccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 36899999999999999987766999999999999999 78889876 899999999999999865 47899999
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCC--cEEEccCCCC
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKL--EVLRMLESGA 117 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L--~~L~l~~~~~ 117 (366)
+|++|++++ +.+.... +..+++| ++|++.+|.+
T Consensus 147 ~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 147 KLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cccEEecCC-CccccCc---hhhhhhceeeEEEeecccc
Confidence 999999999 6666532 4445555 9999988866
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.1e-23 Score=187.18 Aligned_cols=250 Identities=17% Similarity=0.149 Sum_probs=164.2
Q ss_pred CCcCEEEccCCCCCc---cchhhhhcCCcccEEECCC-CCCCCCcC-ccCccccccccCCEEeccCCCCc-cCchhhhcC
Q 040318 6 SNIPSILELSSNNKV---FEPSWFLSRASWTCLDNGP-SRIKNSLT-ELPSGISSLVSLQHLDVSYTDIR-GLPHELTAL 79 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~---l~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~-~l~~~i~~l 79 (366)
.+++.|+++++++.. +|.. +..+++|++|++++ + .+. .+|..+..+++|++|++++|.++ .+|..+.++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n----~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEET----TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCC----cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 578888888888874 6665 78888888888884 6 444 57777888888888888888887 777788888
Q ss_pred ccCCEeeccccccCC-CcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCC-CcceEEEEecccccc
Q 040318 80 LNLRYLNLERTYHLS-RFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLK-LLNLISFSLYSSRGV 157 (366)
Q Consensus 80 ~~L~~L~L~~c~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 157 (366)
++|++|++++ +.+. .+|.. +..+++|++|++.+|.+ ....+..+..++ +|+.|+++++.....
T Consensus 125 ~~L~~L~Ls~-N~l~~~~p~~-~~~l~~L~~L~L~~N~l-------------~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 125 KTLVTLDFSY-NALSGTLPPS-ISSLPNLVGITFDGNRI-------------SGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp TTCCEEECCS-SEEESCCCGG-GGGCTTCCEEECCSSCC-------------EEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred CCCCEEeCCC-CccCCcCChH-HhcCCCCCeEECcCCcc-------------cCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 8888888888 5555 56665 78888888888888866 123344556665 777777765543311
Q ss_pred ccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCC
Q 040318 158 RNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRV 237 (366)
Q Consensus 158 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l 237 (366)
.+..+..++ |+.|+++++.+.......+ ..+++|+.|+++++ .+
T Consensus 190 --------------------------~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~N-~l 233 (313)
T 1ogq_A 190 --------------------------IPPTFANLN-LAFVDLSRNMLEGDASVLF--------GSDKNTQKIHLAKN-SL 233 (313)
T ss_dssp --------------------------CCGGGGGCC-CSEEECCSSEEEECCGGGC--------CTTSCCSEEECCSS-EE
T ss_pred --------------------------CChHHhCCc-ccEEECcCCcccCcCCHHH--------hcCCCCCEEECCCC-ce
Confidence 111233333 6666666666654433322 35667777777776 34
Q ss_pred c-ccccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccC
Q 040318 238 K-DLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQ 316 (366)
Q Consensus 238 ~-~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 316 (366)
+ ..+.+..+++|++|++++|.....+.. .+..+++|++|+++++.--..++.. ..+++|+.+++.+
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQ------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCG------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred eeecCcccccCCCCEEECcCCcccCcCCh------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcC
Confidence 3 244455667777777777665433322 5566777777777766433344432 5577777777777
Q ss_pred CCCCCCCC
Q 040318 317 CPKLKTLP 324 (366)
Q Consensus 317 c~~l~~lp 324 (366)
++.+...|
T Consensus 301 N~~lc~~p 308 (313)
T 1ogq_A 301 NKCLCGSP 308 (313)
T ss_dssp SSEEESTT
T ss_pred CCCccCCC
Confidence 77666544
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=5.2e-23 Score=203.10 Aligned_cols=289 Identities=13% Similarity=0.143 Sum_probs=169.5
Q ss_pred CCCCcCEEEccCCC-CCc--cchhhhhcC------CcccEEECCCCCCCCCcCccCc--cccccccCCEEeccCCCCc-c
Q 040318 4 RYSNIPSILELSSN-NKV--FEPSWFLSR------ASWTCLDNGPSRIKNSLTELPS--GISSLVSLQHLDVSYTDIR-G 71 (366)
Q Consensus 4 ~~~~L~~L~l~~~~-~~~--l~~~~~~~~------~~L~~L~l~~~~~~~~~~~l~~--~~~~l~~L~~L~l~~~~i~-~ 71 (366)
++++|++|++++|. +.. +|.. +..+ ++|++|++++| .++.+|. .+..+++|++|++++|.++ .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n----~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN----NLKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS----CCSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred cCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC----cCCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 45555555555554 442 4443 3333 55555555555 4445554 4555555555555555555 4
Q ss_pred CchhhhcCccCCEeeccccccCCCcChhhhcCCCC-CcEEEccCCCCCCccccccc-----c-------ccchHHHHHhh
Q 040318 72 LPHELTALLNLRYLNLERTYHLSRFPPELICSFSK-LEVLRMLESGADSTAEQGSV-----L-------SEDAEPLMKEL 138 (366)
Q Consensus 72 l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-----~-------~~~~~~~~~~l 138 (366)
+| .++.+++|++|++++ +.+..+|.. +..+++ |++|++++|.+...+..-.. . .......+..+
T Consensus 346 ip-~~~~l~~L~~L~L~~-N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAY-NQITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp CC-CCEEEEEESEEECCS-SEEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred hh-hhCCCCCCCEEECCC-CccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 54 445555555555555 334444443 444544 55555555544322210000 0 00011223334
Q ss_pred c-------CCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCccchh-------hhcccCceEeccccc
Q 040318 139 L-------CLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSHLA-------YMEHLKDLVIDNSNL 204 (366)
Q Consensus 139 ~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~l 204 (366)
. .+++|+.|+++++....++... ...+++|+.|+++++.........+. .+++|+.|++++|.+
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 4 5668888888887776544311 12356799999999887422222222 334999999999999
Q ss_pred ceeeccccCccccccccCCCCCcEEeEecCCCCcccc-cccCCCCccEEEEEccCCcccccccccccccccccccccccc
Q 040318 205 EELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT-WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFA 283 (366)
Q Consensus 205 ~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
+.++..... ..+++|+.|++++| .++.++ .+..+++|+.|++++|+....-. ....++..+..++
T Consensus 501 ~~lp~~~~~-------~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~------l~~~~p~~l~~l~ 566 (636)
T 4eco_A 501 TKLSDDFRA-------TTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNR------TLREWPEGITLCP 566 (636)
T ss_dssp CBCCGGGST-------TTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCB------CCCCCCTTGGGCS
T ss_pred CccChhhhh-------ccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCc------ccccChHHHhcCC
Confidence 866543220 26899999999999 677775 56789999999997655221100 0002233677899
Q ss_pred cccccccccccccccccCCCcCCCCccEEeccCCCC
Q 040318 284 KLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCPK 319 (366)
Q Consensus 284 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 319 (366)
+|++|+++++.- +.++... +++|+.|++++|+-
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~~--~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPN 599 (636)
T ss_dssp SCCEEECCSSCC-CBCCSCC--CTTCCEEECCSCTT
T ss_pred CCCEEECCCCcC-CccCHhH--hCcCCEEECcCCCC
Confidence 999999999754 6776543 38999999999863
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.8e-22 Score=183.24 Aligned_cols=239 Identities=20% Similarity=0.254 Sum_probs=159.2
Q ss_pred CCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCc
Q 040318 29 RASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLE 108 (366)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~ 108 (366)
.+++++|+++++ .++.+|..++.+++|++|++++|.++.+|..++.+++|++|++++ +.+..+|.. +.++++|+
T Consensus 80 ~~~l~~L~L~~n----~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~-l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSV----PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPAS-IASLNRLR 153 (328)
T ss_dssp STTCCEEEEESS----CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGG-GGGCTTCC
T ss_pred ccceeEEEccCC----CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHH-HhcCcCCC
Confidence 467778888887 667777777777888888888887777777777778888888877 566677765 77777777
Q ss_pred EEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCccch
Q 040318 109 VLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSHL 188 (366)
Q Consensus 109 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 188 (366)
+|++++|.... ..+..+. ... ....+
T Consensus 154 ~L~L~~n~~~~-------------~~p~~~~--------------------------------~~~---------~~~~~ 179 (328)
T 4fcg_A 154 ELSIRACPELT-------------ELPEPLA--------------------------------STD---------ASGEH 179 (328)
T ss_dssp EEEEEEETTCC-------------CCCSCSE--------------------------------EEC----------CCCE
T ss_pred EEECCCCCCcc-------------ccChhHh--------------------------------hcc---------chhhh
Confidence 77777764311 0000000 000 00023
Q ss_pred hhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc-cccCCCCccEEEEEccCCcccccccc
Q 040318 189 AYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT-WLAFAPNLKIIVIMHCDDLEEIISVE 267 (366)
Q Consensus 189 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~L~~c~~~~~~~~~~ 267 (366)
..+++|++|++++++++.++.. + ..+++|+.|++++| .++.++ .++.+++|++|++++|.....+..
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~-l--------~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-- 247 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPAS-I--------ANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP-- 247 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGG-G--------GGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC--
T ss_pred ccCCCCCEEECcCCCcCcchHh-h--------cCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH--
Confidence 4456666666666666544321 1 35677777777777 455554 456777888888887776665433
Q ss_pred cccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCCCCCCCCCCCCCCCCcceeEEEcchhhhccc
Q 040318 268 KLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCPKLKTLPLNSSSTKLRNIVISGGKDWWEEL 347 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~ 347 (366)
.+..+++|++|++++|...+.++.....+++|+.|++++|+.+..+|..+..+ ..+..+..+..+...+
T Consensus 248 ----------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 248 ----------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQL 316 (328)
T ss_dssp ----------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC-
T ss_pred ----------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHH
Confidence 56677888888888887777777667778888888888888888888887777 6777777777666665
Q ss_pred ccC
Q 040318 348 QWE 350 (366)
Q Consensus 348 ~~~ 350 (366)
.+.
T Consensus 317 ~~~ 319 (328)
T 4fcg_A 317 DQH 319 (328)
T ss_dssp ---
T ss_pred hhh
Confidence 543
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=197.15 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=204.8
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCcc--CchhhhcCc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRG--LPHELTALL 80 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~--l~~~i~~l~ 80 (366)
++++|++|++++|.+..+++..|..+++|++|++++| .++.++. .++.+++|++|++++|.++. +|..+++++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 149 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET----NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS----CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCcccccccccccc----ccccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence 6899999999999999988766999999999999999 7788765 58899999999999998874 688999999
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCC----cEEEccCCCCCCcccc------------cccc-----------------
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKL----EVLRMLESGADSTAEQ------------GSVL----------------- 127 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L----~~L~l~~~~~~~~~~~------------~~~~----------------- 127 (366)
+|++|++++ +.+..++...+..+++| ++|++.+|.+...... +.+.
T Consensus 150 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~ 228 (570)
T 2z63_A 150 NLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228 (570)
T ss_dssp TCCEEECTT-SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCE
T ss_pred CCCEEeCcC-CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccc
Confidence 999999999 67777655446667666 7777777755322100 0000
Q ss_pred ---------------c------------------------cchHHHHHhhcCCCCcceEEEEecccccccccccc-----
Q 040318 128 ---------------S------------------------EDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF----- 163 (366)
Q Consensus 128 ---------------~------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----- 163 (366)
. ......+..+..+++|+.|+++++....++.....
T Consensus 229 ~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~ 308 (570)
T 2z63_A 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308 (570)
T ss_dssp EEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSE
T ss_pred eeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccE
Confidence 0 00011122344456666666665443332211100
Q ss_pred ----------------------------------ccccccccEEEEeccCCCCcC--ccchhhhcccCceEeccccccee
Q 040318 164 ----------------------------------PKLLRITQALSISDCEIPLLN--VSHLAYMEHLKDLVIDNSNLEEL 207 (366)
Q Consensus 164 ----------------------------------~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~l~~l 207 (366)
...+++|+.|+++++...... ...+..+++|+.|++.++.+..+
T Consensus 309 L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 388 (570)
T 2z63_A 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388 (570)
T ss_dssp EEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE
T ss_pred EeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc
Confidence 023456888888777652222 12566788899999988777665
Q ss_pred eccccCc-------------ccccc---ccCCCCCcEEeEecCCCCccc-c-cccCCCCccEEEEEccCCcccccccccc
Q 040318 208 KTDCTGE-------------VQKVL---QCGFRSLHLASIAFCSRVKDL-T-WLAFAPNLKIIVIMHCDDLEEIISVEKL 269 (366)
Q Consensus 208 ~~~~~~~-------------~~~~p---~~~~~~L~~L~l~~~~~l~~l-~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~ 269 (366)
....... ....+ ...+++|+.|++++| .++.. + .+..+++|++|++++|...+..
T Consensus 389 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------ 461 (570)
T 2z63_A 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENF------ 461 (570)
T ss_dssp EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGE------
T ss_pred cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCcccc------
Confidence 5321100 00001 134455666666555 33332 1 2445666666666665433111
Q ss_pred cccccccccccccccccccccccccccccccCCCcCCCCccEEeccCCCCCCCCCCC-CCCCCcceeEEEcchhhhc
Q 040318 270 NQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCPKLKTLPLN-SSSTKLRNIVISGGKDWWE 345 (366)
Q Consensus 270 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~~~~~~~~~~~~~~ 345 (366)
++..+..+++|++|+++++.--...+.....+++|+.|++++| +++.+|.. +..+ ..++.++.....|.
T Consensus 462 -----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 462 -----LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRL-TSLQKIWLHTNPWD 531 (570)
T ss_dssp -----ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEECCSSCBC
T ss_pred -----chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcc-cCCcEEEecCCccc
Confidence 1236678899999999987433333445667899999999998 67777654 3333 66666665554433
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6e-22 Score=197.29 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=108.9
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCch-hhhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPH-ELTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~ 83 (366)
+++++|++++|.+..++...|.++++|++|++++| .+..+ |..+.++++|++|++++|.++.+|. .++++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN----TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS----CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC----ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 57888899888888887776888888899998888 66665 5557788888888888888887776 478888888
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++...+.++++|++|++++|.+... .+..+..+++|+.|+++++...........
T Consensus 101 ~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 101 ELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSST-------------KLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp EEECCS-SCCCCCCSCTTTTCTTCCEEECCSSCCSCC-------------CCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred EEECCC-CccCccChhHccccCCCCEEECCCCccccc-------------CchhhcccccCCEEEccCCcccccCHHHhh
Confidence 888888 567777654478888888888888866221 223345666777777766554433211100
Q ss_pred ccccccccEEEEeccCC
Q 040318 164 PKLLRITQALSISDCEI 180 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~ 180 (366)
...+.+|+.|+++++..
T Consensus 167 ~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQI 183 (680)
T ss_dssp GGTTCEESEEECTTCCC
T ss_pred ccccccccEEECCCCcc
Confidence 01123466666665543
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.6e-22 Score=201.47 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=170.2
Q ss_pred CCCCcCEEEccCCCCCccch--hhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEP--SWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~--~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~ 81 (366)
.+++|+.|++++|.+..+|. . +.++++|++|++++| .+..+| .+..+++|++|++++|.+..+|..+..+++
T Consensus 546 ~l~~L~~L~Ls~N~L~~ip~~~~-l~~L~~L~~L~Ls~N----~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~ 619 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLEEFPASAS-LQKMVKLGLLDCVHN----KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619 (876)
T ss_dssp TTTTCCEEECCSSCCCBCCCHHH-HTTCTTCCEEECTTS----CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECT
T ss_pred ccCCccEEEeeCCcCCccCChhh-hhcCCCCCEEECCCC----Ccccch-hhcCCCcceEEECcCCccccchHHHhhccc
Confidence 34455555555555555554 3 555555555555555 444555 455555555555555555555555555555
Q ss_pred -CCEeeccccccCCCcChhhhcCCC--CCcEEEccCCCCCCccccccccccchHHHHHhhc--CCCCcceEEEEeccccc
Q 040318 82 -LRYLNLERTYHLSRFPPELICSFS--KLEVLRMLESGADSTAEQGSVLSEDAEPLMKELL--CLKLLNLISFSLYSSRG 156 (366)
Q Consensus 82 -L~~L~L~~c~~~~~l~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~ 156 (366)
|++|++++ +.+..+|.. +..++ +|+.|++++|.+... ....+..+. .+++|+.|+++++....
T Consensus 620 ~L~~L~Ls~-N~L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~----------ip~l~~~l~~~~~~~L~~L~Ls~N~L~~ 687 (876)
T 4ecn_A 620 QVEGLGFSH-NKLKYIPNI-FNAKSVYVMGSVDFSYNKIGSE----------GRNISCSMDDYKGINASTVTLSYNEIQK 687 (876)
T ss_dssp TCCEEECCS-SCCCSCCSC-CCTTCSSCEEEEECCSSCTTTT----------SSSCSSCTTTCCCCCEEEEECCSSCCCS
T ss_pred cCCEEECcC-CCCCcCchh-hhccccCCCCEEECcCCcCCCc----------cccchhhhccccCCCcCEEEccCCcCCc
Confidence 55555555 344455542 33332 255555555544110 000111122 23578889988877765
Q ss_pred cccccccccccccccEEEEeccCCCCcCccc-------hhhhcccCceEecccccceeeccccCccccccccCCCCCcEE
Q 040318 157 VRNFLKFPKLLRITQALSISDCEIPLLNVSH-------LAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLA 229 (366)
Q Consensus 157 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L 229 (366)
++... ...+++|+.|+++++......... +..+++|+.|++++|++..++.... ...+++|+.|
T Consensus 688 lp~~~--~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~-------~~~l~~L~~L 758 (876)
T 4ecn_A 688 FPTEL--FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-------ATTLPYLSNM 758 (876)
T ss_dssp CCHHH--HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS-------TTTCTTCCEE
T ss_pred cCHHH--HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh-------hccCCCcCEE
Confidence 44321 123567999999998763222222 2244599999999999886654222 1268999999
Q ss_pred eEecCCCCcccc-cccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCC
Q 040318 230 SIAFCSRVKDLT-WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQ 308 (366)
Q Consensus 230 ~l~~~~~l~~l~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 308 (366)
++++| .++.++ .+..+++|+.|+|++|..+..-. ....++..+..+++|+.|+++++.- +.++... +++
T Consensus 759 ~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~------l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~ 828 (876)
T 4ecn_A 759 DVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNR------ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQ 828 (876)
T ss_dssp ECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCB------CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--CSS
T ss_pred EeCCC-CCCccchhhhcCCCCCEEECCCCCCccccc------ccccChHHHhcCCCCCEEECCCCCC-CccCHhh--cCC
Confidence 99999 677776 57789999999998855221100 0012233677899999999999854 7776553 479
Q ss_pred ccEEeccCCCC
Q 040318 309 LKEIRVTQCPK 319 (366)
Q Consensus 309 L~~L~l~~c~~ 319 (366)
|+.|++++|+-
T Consensus 829 L~~LdLs~N~l 839 (876)
T 4ecn_A 829 LYILDIADNPN 839 (876)
T ss_dssp SCEEECCSCTT
T ss_pred CCEEECCCCCC
Confidence 99999999863
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.7e-22 Score=190.11 Aligned_cols=274 Identities=15% Similarity=0.174 Sum_probs=165.3
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.+++|++|++++|.+..++ +..+++|++|++++| .++.++ ++.+++|++|++++|.++.+| ++.+++|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N----~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN----KLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS----CCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred ccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC----CCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence 6788999999999888875 678899999999999 677775 778899999999999888775 78888999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++ +..+++|++|++.+|..... . .+..+++|+.|+++++....++ +
T Consensus 131 ~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~-------------~--~~~~l~~L~~L~ls~n~l~~l~-l--- 187 (457)
T 3bz5_A 131 YLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITK-------------L--DVTPQTQLTTLDCSFNKITELD-V--- 187 (457)
T ss_dssp EEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCC-------------C--CCTTCTTCCEEECCSSCCCCCC-C---
T ss_pred EEECCC-Cccceec---cccCCcCCEEECCCCCcccc-------------c--ccccCCcCCEEECCCCccceec-c---
Confidence 999988 6676663 66788888888888743111 0 2455666666666666555433 1
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCc----------cccccccCCCCCcEEeEec
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGE----------VQKVLQCGFRSLHLASIAF 233 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~----------~~~~p~~~~~~L~~L~l~~ 233 (366)
..+++|+.|++.++.... ..+..+++|+.|++++++++.++...... -..+|...+++|+.|++++
T Consensus 188 -~~l~~L~~L~l~~N~l~~---~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 188 -SQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp -TTCTTCCEEECCSSCCSC---CCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred -ccCCCCCEEECcCCcCCe---eccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 223345566655554411 13445555555555555554433100000 0001112344444333322
Q ss_pred ----------CCCCcccccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCC
Q 040318 234 ----------CSRVKDLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGA 303 (366)
Q Consensus 234 ----------~~~l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 303 (366)
|.....++ .+.+++|+.|++++|.....+.. ....+..+ .+..+++|++|+++++ .++.+ ..
T Consensus 264 n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L--~l~~~~~L~~L~L~~N-~l~~l--~l 335 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC--QAAGITEL--DLSQNPKLVYLYLNNT-ELTEL--DV 335 (457)
T ss_dssp CCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCC--CCTTCTTCCEEECTTC-CCSCC--CC
T ss_pred CCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc--CCCcceEe--chhhcccCCEEECCCC-ccccc--cc
Confidence 22122222 34567777777777765554432 00111111 2455677777777764 34444 35
Q ss_pred cCCCCccEEeccCCCCCCCCC
Q 040318 304 LPLPQLKEIRVTQCPKLKTLP 324 (366)
Q Consensus 304 ~~~~~L~~L~l~~c~~l~~lp 324 (366)
..+++|+.|+++++ +++.+|
T Consensus 336 ~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 336 SHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp TTCTTCSEEECCSS-CCCBCT
T ss_pred ccCCcCcEEECCCC-CCCCcc
Confidence 67899999999875 566554
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=8.4e-22 Score=191.34 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=93.7
Q ss_pred CCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCcc--CchhhhcC
Q 040318 3 IRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRG--LPHELTAL 79 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~--l~~~i~~l 79 (366)
..+++|++|++++|.+..+++..|..+++|++|++++| .+..++.. +..+++|++|++++|.++. .|..++++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN----HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS----CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCC----ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 47899999999999999887666899999999999999 77877654 8889999999999998874 46678899
Q ss_pred ccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCC
Q 040318 80 LNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGAD 118 (366)
Q Consensus 80 ~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~ 118 (366)
++|++|++++|..+..++...+.++++|++|++.+|.+.
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 999999999855577777544888899999999888764
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2e-21 Score=176.61 Aligned_cols=273 Identities=11% Similarity=0.094 Sum_probs=164.8
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
++++.|++++|.+..++...+.++++|++|++++| .++.+ |..+..+++|++|++++|.++.+|..+. ++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC----cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence 56777777777777776655777777777777777 55665 5567777777777777777777665543 67777
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|++++ +.+..++...+.++++|++|++.+|.+... ...+..+..+++|+.|+++++....++...
T Consensus 126 L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--- 190 (330)
T 1xku_A 126 LRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS-----------GIENGAFQGMKKLSYIRIADTNITTIPQGL--- 190 (330)
T ss_dssp EECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------GBCTTGGGGCTTCCEEECCSSCCCSCCSSC---
T ss_pred EECCC-CcccccCHhHhcCCccccEEECCCCcCCcc-----------CcChhhccCCCCcCEEECCCCccccCCccc---
Confidence 77777 566666665577777777777777765211 122344566777777777776665544322
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc-cc
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT-WL 243 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~-~l 243 (366)
.++|++|+++++.........+..+++|+.|+++++.+..+....+ ..+++|+.|++++| .++.++ .+
T Consensus 191 --~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~N-~l~~lp~~l 259 (330)
T 1xku_A 191 --PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--------ANTPHLRELHLNNN-KLVKVPGGL 259 (330)
T ss_dssp --CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--------GGSTTCCEEECCSS-CCSSCCTTT
T ss_pred --cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--------cCCCCCCEEECCCC-cCccCChhh
Confidence 2457777777766522222356677777777777777766654333 35677777777777 566654 45
Q ss_pred cCCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccccccc---CCCcCCCCccEEeccCC
Q 040318 244 AFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIY---QGALPLPQLKEIRVTQC 317 (366)
Q Consensus 244 ~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~c 317 (366)
..+++|++|++++|.... +........ ......+.|+.|++++.+. ..+. .....++.|+.++++++
T Consensus 260 ~~l~~L~~L~l~~N~i~~-~~~~~f~~~-----~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISA-IGSNDFCPP-----GYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCSSCCEEECCSSCCCC-CCTTSSSCS-----SCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccCCCcCEEECCCCcCCc-cChhhcCCc-----ccccccccccceEeecCcc-cccccCccccccccceeEEEeccc
Confidence 667777777777765332 211000000 0111245666666665432 1111 12233556666666554
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=199.21 Aligned_cols=136 Identities=20% Similarity=0.132 Sum_probs=100.3
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccC-chhhhcCccC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGL-PHELTALLNL 82 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L 82 (366)
.++|+.|+|++|.+..+++..|.++++|++|++++|. ....+ |..+.++++|++|++++|.+..+ |..+.++++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~---~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY---TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC---CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC---CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 4678888888888887665558888888888888885 45556 56678888888888888888755 6778888888
Q ss_pred CEeeccccccCCC-cCh-hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccc
Q 040318 83 RYLNLERTYHLSR-FPP-ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRG 156 (366)
Q Consensus 83 ~~L~L~~c~~~~~-l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 156 (366)
++|++++ +.+.. ++. ..+.++++|++|++++|.+... .....++.+++|+.|+++++....
T Consensus 100 ~~L~Ls~-n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~------------~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 100 FELRLYF-CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL------------YLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEECTT-CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC------------CCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CEeeCcC-CCCCcccccCccccccCCCCEEECCCCccccc------------ccchhHhhCCCCCEEECCCCcCCe
Confidence 8888888 45544 332 2367888888888888876322 122456778888888888766543
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=5.3e-22 Score=200.13 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCCCcEEeEecCCCCcc-cc-cccCCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccccccc
Q 040318 223 FRSLHLASIAFCSRVKD-LT-WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIY 300 (366)
Q Consensus 223 ~~~L~~L~l~~~~~l~~-l~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 300 (366)
+++|+.|++++| .++. +| .++.+++|+.|+|++|.....+.. .++.+++|+.|+++++.--..++
T Consensus 631 l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 631 NGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp SBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEECCC
T ss_pred cccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCCh------------HHhCCCCCCEEECCCCcccCcCC
Confidence 455666666666 3432 33 355666666666666654433332 55666667777776654444555
Q ss_pred CCCcCCCCccEEeccCCCCCCCCCCC
Q 040318 301 QGALPLPQLKEIRVTQCPKLKTLPLN 326 (366)
Q Consensus 301 ~~~~~~~~L~~L~l~~c~~l~~lp~~ 326 (366)
.....+++|+.|++++++--..+|..
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred hHHhCCCCCCEEECcCCcccccCCCc
Confidence 55556666777777765433345543
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=5.7e-21 Score=190.21 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=93.4
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCc-hhhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLP-HELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~~ 81 (366)
++++|++|++++|.+..+++..+.++++|++|++++| .++.+|. .+..+++|++|++++|.++.++ ..++++++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN----ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC----ccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 5789999999999999887776899999999999999 7788876 4888999999999999988776 56889999
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCC
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGAD 118 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~ 118 (366)
|++|++++ +.+...+...+.++++|++|++.+|.+.
T Consensus 123 L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 123 LITLDLSH-NGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCEEECCS-SCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CCEEECCC-CcccccCchhhcccccCCEEEccCCccc
Confidence 99999999 5666654444788999999999998763
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=178.34 Aligned_cols=275 Identities=16% Similarity=0.135 Sum_probs=196.3
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccC-chhhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGL-PHELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~ 81 (366)
.|+.....+.++++++.+|..+ .++|++|++++| .++.++. .+..+++|++|++++|.++.+ +..+.++++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNN----RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCeEeeCCCCCcccccccc---cccCcEEECCCC----cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 4666777888888899888763 358999999999 7788765 688899999999999988866 456888999
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecc-ccccccc
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYS-SRGVRNF 160 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~ 160 (366)
|++|++++ +.+..++.+.+.++++|++|++++|.+...+ ....+..+++|+.|+++++. ....+.
T Consensus 102 L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~------------~~~~~~~l~~L~~L~l~~n~~~~~~~~- 167 (353)
T 2z80_A 102 LEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG------------ETSLFSHLTKLQILRVGNMDTFTKIQR- 167 (353)
T ss_dssp CCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTCCCSSSC------------SSCSCTTCTTCCEEEEEESSSCCEECT-
T ss_pred CCEEECCC-CcCCcCCHhHhCCCccCCEEECCCCCCcccC------------chhhhccCCCCcEEECCCCccccccCH-
Confidence 99999999 7888888776888999999999998773221 01246778899999998873 333321
Q ss_pred cccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccc
Q 040318 161 LKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDL 240 (366)
Q Consensus 161 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l 240 (366)
.....+++|++|+++++.........+..+++|++|+++++.+..+..... ..+++|+.|++++| .++.+
T Consensus 168 -~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~L~~n-~l~~~ 237 (353)
T 2z80_A 168 -KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV--------DVTSSVECLELRDT-DLDTF 237 (353)
T ss_dssp -TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HHTTTEEEEEEESC-BCTTC
T ss_pred -HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh--------hhcccccEEECCCC-ccccc
Confidence 111234568888888887633333367788888999988887765543222 35788999999888 45553
Q ss_pred c-----cccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCC-cCCCCccEEec
Q 040318 241 T-----WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGA-LPLPQLKEIRV 314 (366)
Q Consensus 241 ~-----~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l 314 (366)
+ .....+.++.+++.++........ .++..+..+++|++|+++++ .++.++... ..+++|++|++
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~--------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESLF--------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHHH--------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred cccccccccccchhhccccccccccCcchh--------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 3 223466788888887754332211 22235667889999999886 555666554 56889999999
Q ss_pred cCCC
Q 040318 315 TQCP 318 (366)
Q Consensus 315 ~~c~ 318 (366)
++++
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 8875
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.6e-21 Score=177.44 Aligned_cols=274 Identities=12% Similarity=0.079 Sum_probs=176.9
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..+..+++|++|++++|.++.+|..+. ++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN----KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS----CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC----ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCE
Confidence 57888888888888776655788888888888888 66665 5567778888888888888877776554 77888
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|++++ +.+..++.+.+..+++|++|++.+|.+... ...+..+..+ +|+.|+++++....++...
T Consensus 128 L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~--- 191 (332)
T 2ft3_A 128 LRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------GFEPGAFDGL-KLNYLRISEAKLTGIPKDL--- 191 (332)
T ss_dssp EECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSS---
T ss_pred EECCC-CccCccCHhHhCCCccCCEEECCCCccccC-----------CCCcccccCC-ccCEEECcCCCCCccCccc---
Confidence 88888 677777765577788888888888766211 1223344455 7788888777666554322
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc-cc
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT-WL 243 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~-~l 243 (366)
.++|++|+++++.........+..+++|+.|++++|.+..+....+ ..+++|+.|++++| .++.++ .+
T Consensus 192 --~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~L~~N-~l~~lp~~l 260 (332)
T 2ft3_A 192 --PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SFLPTLRELHLDNN-KLSRVPAGL 260 (332)
T ss_dssp --CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GGCTTCCEEECCSS-CCCBCCTTG
T ss_pred --cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hCCCCCCEEECCCC-cCeecChhh
Confidence 2457888887776633333366777888888888877776654333 36778888888888 666765 36
Q ss_pred cCCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccc--ccccCCCcCCCCccEEeccCCC
Q 040318 244 AFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENL--KSIYQGALPLPQLKEIRVTQCP 318 (366)
Q Consensus 244 ~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~c~ 318 (366)
..+++|++|++++|.... +........ .....++.|+.|++++++.. .........+++|+.+++++++
T Consensus 261 ~~l~~L~~L~l~~N~l~~-~~~~~~~~~-----~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITK-VGVNDFCPV-----GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCB-CCTTSSSCS-----SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCc-cChhHcccc-----ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 678888888888776432 211000000 00112567788888776432 1112223346677777777764
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=9.6e-21 Score=192.87 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=93.0
Q ss_pred CCCCCcCEEEccCCC-CCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCcc-Cchh--hh
Q 040318 3 IRYSNIPSILELSSN-NKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRG-LPHE--LT 77 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~-l~~~--i~ 77 (366)
.++++|++|++++|. +..+++..|.++++|++|++++| .+..+ |..+..+++|++|++++|.++. .|.. ++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N----~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS----KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC----CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC----cCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 478999999999985 44676666999999999999999 77776 7789999999999999998874 4554 88
Q ss_pred cCccCCEeeccccccCCCcC-hhhhcCCCCCcEEEccCCCCC
Q 040318 78 ALLNLRYLNLERTYHLSRFP-PELICSFSKLEVLRMLESGAD 118 (366)
Q Consensus 78 ~l~~L~~L~L~~c~~~~~l~-~~~l~~l~~L~~L~l~~~~~~ 118 (366)
++++|++|++++ +.+..++ ...+.++++|++|++++|.+.
T Consensus 121 ~L~~L~~L~Ls~-N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 121 NLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SCSSCCEEEEES-CCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred ccCCCCEEECCC-CcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999999999999 6666653 234899999999999999763
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.8e-22 Score=182.51 Aligned_cols=245 Identities=11% Similarity=0.038 Sum_probs=129.7
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
+++|++|++++|.+..+++..+..+++|++|++++| .+..++. +..+++|++|++++|.++.++ ..++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN----VLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS----CCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC----cCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 456666666666666665544666666666666666 4554443 556666666666666665443 2356666
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|++++ +.+..++.. .+++|++|++.+|.+.. ..+..+..+++|+.|+++++........ ...
T Consensus 104 L~l~~-n~l~~~~~~---~~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~ 165 (317)
T 3o53_A 104 LHAAN-NNISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELA 165 (317)
T ss_dssp EECCS-SCCSEEEEC---CCSSCEEEECCSSCCCS-------------GGGBCTGGGSSEEEEECTTSCCCEEEGG-GGG
T ss_pred EECCC-CccCCcCcc---ccCCCCEEECCCCCCCC-------------ccchhhhccCCCCEEECCCCCCCcccHH-HHh
Confidence 66666 455554432 35666666666665521 1122344556666666665554433211 011
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc-cc
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT-WL 243 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~-~l 243 (366)
..+++|+.|+++++..... .....+++|+.|++++|+++.+... + ..+++|+.|++++| .++.++ .+
T Consensus 166 ~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~--------~~l~~L~~L~L~~N-~l~~l~~~~ 233 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-F--------QSAAGVTWISLRNN-KLVLIEKAL 233 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-G--------GGGTTCSEEECTTS-CCCEECTTC
T ss_pred hccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh-h--------cccCcccEEECcCC-cccchhhHh
Confidence 1234466666665554111 1222355666666666666555432 1 24566666666666 455543 24
Q ss_pred cCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccc
Q 040318 244 AFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSI 299 (366)
Q Consensus 244 ~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 299 (366)
..+++|+.|++++|....+..+ ..+..+++|+.|++.++..++..
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~-----------~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLR-----------DFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHH-----------HHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hcCCCCCEEEccCCCccCcCHH-----------HHHhccccceEEECCCchhccCC
Confidence 4556666666666554411111 13445566666666555554443
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=181.52 Aligned_cols=124 Identities=21% Similarity=0.157 Sum_probs=102.6
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccC-chhhhcCccCCEee
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGL-PHELTALLNLRYLN 86 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~L~ 86 (366)
++|++++++++.+|..+ . ++|++|++++| .+..++ ..+..+++|++|++++|.++.+ |..+.++++|++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~-~--~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-S--QKTTILNISQN----YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSCCCSC-C--TTCSEEECCSS----CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCcccccccc-c--ccccEEECCCC----cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 68999999999999863 2 89999999999 778876 5688999999999999999866 67899999999999
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSR 155 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 155 (366)
+++ +.+..+|.. .+++|++|++++|.+... ..+..++.+++|+.|+++++...
T Consensus 76 Ls~-N~l~~lp~~---~l~~L~~L~L~~N~l~~~------------~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 76 LSH-NKLVKISCH---PTVNLKHLDLSFNAFDAL------------PICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCS-SCCCEEECC---CCCCCSEEECCSSCCSSC------------CCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCC-CceeecCcc---ccCCccEEeccCCccccc------------cchhhhccCCcceEEEecCcccc
Confidence 999 788888873 899999999999987331 22355666777777777766544
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1e-21 Score=176.55 Aligned_cols=125 Identities=20% Similarity=0.203 Sum_probs=78.8
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccC---chhhhcCccCCE
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGL---PHELTALLNLRY 84 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l---~~~i~~l~~L~~ 84 (366)
+.++.++++++.+|..+ .++|++|++++| .++.+|.. +..+++|++|++++|.++.. +..+..+++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n----~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESN----KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCC----ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 45666666677776642 356777777777 66666654 46677777777777766633 455566777777
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSS 154 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 154 (366)
|++++ +.+..++.. +..+++|++|++.+|.+... .....+..+++|+.|+++++..
T Consensus 83 L~Ls~-n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~l~~L~~L~l~~n~l 138 (306)
T 2z66_A 83 LDLSF-NGVITMSSN-FLGLEQLEHLDFQHSNLKQM------------SEFSVFLSLRNLIYLDISHTHT 138 (306)
T ss_dssp EECCS-CSEEEEEEE-EETCTTCCEEECTTSEEESS------------TTTTTTTTCTTCCEEECTTSCC
T ss_pred EECCC-CccccChhh-cCCCCCCCEEECCCCccccc------------ccchhhhhccCCCEEECCCCcC
Confidence 77777 555566655 66777777777777755211 1113455666777776665443
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=3.8e-21 Score=182.32 Aligned_cols=223 Identities=18% Similarity=0.173 Sum_probs=158.6
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCchh-hhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPHE-LTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~ 83 (366)
+++++|++++|++..+++..|.++++|++|++++| .++.++ ..+..+++|++|++++|.++.+|.. +..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN----SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC----ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 46888888888888776655788888888888888 666664 4577788888888888888766653 67788888
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++...+.++++|++|++.+|..... .....+..+++|+.|+++++....++.+.
T Consensus 151 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 215 (452)
T 3zyi_A 151 ELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEY------------ISEGAFEGLFNLKYLNLGMCNIKDMPNLT-- 215 (452)
T ss_dssp EEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCTTCCEEECTTSCCSSCCCCT--
T ss_pred EEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccc------------cChhhccCCCCCCEEECCCCccccccccc--
Confidence 888888 677777765577888888888887543111 11234667788888888877766655432
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc-
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW- 242 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~- 242 (366)
.+++|+.|+++++.........+..+++|+.|++.++++..+....+ ..+++|+.|++++| .++.++.
T Consensus 216 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~ 284 (452)
T 3zyi_A 216 --PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF--------DGLASLVELNLAHN-NLSSLPHD 284 (452)
T ss_dssp --TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT--------TTCTTCCEEECCSS-CCSCCCTT
T ss_pred --ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh--------cCCCCCCEEECCCC-cCCccChH
Confidence 33458888888777633333367777888888888887777665444 36778888888888 6666553
Q ss_pred -ccCCCCccEEEEEccC
Q 040318 243 -LAFAPNLKIIVIMHCD 258 (366)
Q Consensus 243 -l~~l~~L~~L~L~~c~ 258 (366)
+..+++|+.|+|++|+
T Consensus 285 ~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SSTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEccCCC
Confidence 4567888888887765
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=181.62 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=149.6
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCch-hhhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPH-ELTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~ 83 (366)
++++.|++++|.+..++...|.++++|++|++++| .++.++ ..+..+++|++|++++|.++.++. .+..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n----~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN----HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS----CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC----cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 45777777777777766555777777888888777 666664 446667778888887777776654 467777788
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++...+.++++|++|++.+|..... .....+..+++|+.|+++++....++.+.
T Consensus 140 ~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 204 (440)
T 3zyj_A 140 ELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSY------------ISEGAFEGLSNLRYLNLAMCNLREIPNLT-- 204 (440)
T ss_dssp EEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCSSCCEEECTTSCCSSCCCCT--
T ss_pred eeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcce------------eCcchhhcccccCeecCCCCcCccccccC--
Confidence 888777 666676665577777788887777533111 11234566777777777777666555432
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc-
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW- 242 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~- 242 (366)
.+.+|+.|+++++.........+..+++|+.|++.++++..+....+ ..+++|+.|++++| .++.++.
T Consensus 205 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 205 --PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--------DNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp --TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS--------TTCTTCCEEECTTS-CCCCCCTT
T ss_pred --CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh--------cCCCCCCEEECCCC-CCCccChh
Confidence 23457777777776533333366677777777777777776665444 35677777777777 5666542
Q ss_pred -ccCCCCccEEEEEccCC
Q 040318 243 -LAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 243 -l~~l~~L~~L~L~~c~~ 259 (366)
+..+++|+.|+|++|+.
T Consensus 274 ~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTSSCTTCCEEECCSSCE
T ss_pred HhccccCCCEEEcCCCCc
Confidence 45677777777776653
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=175.77 Aligned_cols=253 Identities=16% Similarity=0.141 Sum_probs=191.1
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCchh-hhcCccC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPHE-LTALLNL 82 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L 82 (366)
.++|++|++++|.+..++...+..+++|++|++++| .++.++ ..+..+++|++|++++|.++.+|.. ++++++|
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN----GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC----ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 358999999999999988866999999999999999 778774 5688999999999999999988876 8899999
Q ss_pred CEeeccccccCCCcCh-hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccc
Q 040318 83 RYLNLERTYHLSRFPP-ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFL 161 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 161 (366)
++|++++ +.+..++. +.+..+++|++|++.+|... ....+..+..+++|+.|+++++.......
T Consensus 127 ~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 191 (353)
T 2z80_A 127 TFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTF------------TKIQRKDFAGLTFLEELEIDASDLQSYEP-- 191 (353)
T ss_dssp SEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSC------------CEECTTTTTTCCEEEEEEEEETTCCEECT--
T ss_pred CEEECCC-CCCcccCchhhhccCCCCcEEECCCCccc------------cccCHHHccCCCCCCEEECCCCCcCccCH--
Confidence 9999999 78888876 44889999999999998421 11224567788999999999987765421
Q ss_pred ccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcc--
Q 040318 162 KFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKD-- 239 (366)
Q Consensus 162 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~-- 239 (366)
.....+++|++|+++++.........+..+++|+.|+++++.+..+...... .......++.+++.++ .+.+
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----~~~~~~~l~~l~L~~~-~l~~~~ 265 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-----TGETNSLIKKFTFRNV-KITDES 265 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------CCCCCCEEEEESC-BCCHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----cccccchhhccccccc-cccCcc
Confidence 1122355799999999886222222556789999999999888766542221 1134677888888888 4544
Q ss_pred ---cc-cccCCCCccEEEEEccCCccccccccccccccccccccccccccccccccccc
Q 040318 240 ---LT-WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAE 294 (366)
Q Consensus 240 ---l~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 294 (366)
++ .+..+++|++|++++|... .+.. ..+..+++|++|++++++
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~-----------~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPD-----------GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCH-----------HHHhcCCCCCEEEeeCCC
Confidence 22 3568899999999988654 3321 134678999999998763
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.9e-20 Score=184.56 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=71.6
Q ss_pred cCCCCCcEEeEecCCCCcccc--cccCCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccccc
Q 040318 221 CGFRSLHLASIAFCSRVKDLT--WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKS 298 (366)
Q Consensus 221 ~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 298 (366)
..++.|+.|++++|...+.+. .+..+++|++|+|++|....... ..+.++++|++|+|+++ .++.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~------------~~f~~l~~L~~L~Ls~N-~l~~ 532 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP------------TAFNSLSSLQVLNMSHN-NFFS 532 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTS-CCCB
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh------------HHHcCCCCCCEEECCCC-cCCC
Confidence 457788889888885444432 46678899999999886443322 26778999999999986 4555
Q ss_pred ccC-CCcCCCCccEEeccCCCCCCCCC-CCCCCCCcceeEEEc
Q 040318 299 IYQ-GALPLPQLKEIRVTQCPKLKTLP-LNSSSTKLRNIVISG 339 (366)
Q Consensus 299 ~~~-~~~~~~~L~~L~l~~c~~l~~lp-~~~~~~~~~~~~~~~ 339 (366)
+.. ....+++|+.|+++++ +++.++ ..+..+...+..++.
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEEC
T ss_pred CChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEe
Confidence 543 3456899999999997 566654 444444345555543
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1.2e-20 Score=167.96 Aligned_cols=222 Identities=12% Similarity=0.056 Sum_probs=165.4
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccC-chhhhcCccCCEee
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGL-PHELTALLNLRYLN 86 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~L~ 86 (366)
+.++.+++++..+|.. ..++|++|++++| .++.++. .+..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n----~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGN----RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSCCTT---CCTTCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccCCcC---CCCCceEEEeeCC----cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 5678888888888865 3578999999999 7777764 577889999999999988865 66788899999999
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKL 166 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 166 (366)
+++|..+..++...+..+++|++|++.+|.+.. ..+..+..+++|+.|+++++.....+.- ....
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~ 151 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-------------LGPGLFRGLAALQYLYLQDNALQALPDD--TFRD 151 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-------------CCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTT
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCE-------------ECHhHhhCCcCCCEEECCCCcccccCHh--Hhcc
Confidence 998444777755448889999999999987622 2234567788999999988776554321 1123
Q ss_pred cccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--ccc
Q 040318 167 LRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--WLA 244 (366)
Q Consensus 167 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~l~ 244 (366)
+++|+.|+++++.........+..+++|+.|++.++.+..+....+ ..+++|+.|++++| .++.++ .+.
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~n-~l~~~~~~~~~ 222 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF--------RDLGRLMTLYLFAN-NLSALPTEALA 222 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--------TTCTTCCEEECCSS-CCSCCCHHHHT
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc--------cCcccccEeeCCCC-cCCcCCHHHcc
Confidence 4568888888876532333357778899999998888877755444 46788999999998 677765 367
Q ss_pred CCCCccEEEEEccCCcc
Q 040318 245 FAPNLKIIVIMHCDDLE 261 (366)
Q Consensus 245 ~l~~L~~L~L~~c~~~~ 261 (366)
.+++|++|++++|+...
T Consensus 223 ~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TCTTCCEEECCSSCEEC
T ss_pred cCcccCEEeccCCCccC
Confidence 88999999998876543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.6e-20 Score=168.80 Aligned_cols=202 Identities=15% Similarity=0.124 Sum_probs=114.6
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc---CccccccccCCEEeccCCCCccCchhhhcCccC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL---PSGISSLVSLQHLDVSYTDIRGLPHELTALLNL 82 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l---~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L 82 (366)
++|++|++++|.+..++..+|..+++|++|++++| .++.+ +..+..+++|++|++++|.+..+|..+..+++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN----GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS----CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC----ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 46777777777777766665667777777777777 44433 344555677777777777766666666677777
Q ss_pred CEeeccccccCCCcCh-hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccc
Q 040318 83 RYLNLERTYHLSRFPP-ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFL 161 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 161 (366)
++|++++ +.+..++. ..+..+++|++|++.+|.+. ...+..+..+++|+.|+++++.....
T Consensus 104 ~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~---- 165 (306)
T 2z66_A 104 EHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTR-------------VAFNGIFNGLSSLEVLKMAGNSFQEN---- 165 (306)
T ss_dssp CEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCE-------------ECSTTTTTTCTTCCEEECTTCEEGGG----
T ss_pred CEEECCC-CcccccccchhhhhccCCCEEECCCCcCC-------------ccchhhcccCcCCCEEECCCCccccc----
Confidence 7777776 55555543 23666777777777776541 11222344445555555543322110
Q ss_pred ccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc
Q 040318 162 KFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT 241 (366)
Q Consensus 162 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~ 241 (366)
.....+..+++|+.|+++++.+..+....+ ..+++|+.|++++| .++.++
T Consensus 166 ---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~N-~l~~~~ 215 (306)
T 2z66_A 166 ---------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAF--------NSLSSLQVLNMSHN-NFFSLD 215 (306)
T ss_dssp ---------------------EECSCCTTCTTCCEEECTTSCCCEECTTTT--------TTCTTCCEEECTTS-CCSBCC
T ss_pred ---------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHh--------cCCCCCCEEECCCC-ccCccC
Confidence 001133445566666666666655543333 24566666666666 444433
Q ss_pred --cccCCCCccEEEEEccCC
Q 040318 242 --WLAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 242 --~l~~l~~L~~L~L~~c~~ 259 (366)
.+..+++|++|++++|..
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCC
T ss_pred hhhccCcccCCEeECCCCCC
Confidence 234555666666655543
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.6e-19 Score=176.39 Aligned_cols=254 Identities=19% Similarity=0.090 Sum_probs=167.0
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEee
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLN 86 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~ 86 (366)
+++.|+++++++..+|..+ . ++|++|++++| .++.+|. .+++|++|++++|.++.+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l-~--~~L~~L~L~~N----~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL-P--AHITTLVIPDN----NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC-C--TTCSEEEECSC----CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred CCcEEEecCCCcCccChhh-C--CCCcEEEecCC----CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence 5788899988888888763 2 78899999988 7777776 56888999999998888876 678889999
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKL 166 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 166 (366)
+++ +.+..+|. .+++|+.|++.+|.+...+ ..+++|+.|+++++....++. .
T Consensus 108 Ls~-N~l~~l~~----~l~~L~~L~L~~N~l~~lp-----------------~~l~~L~~L~Ls~N~l~~l~~------~ 159 (622)
T 3g06_A 108 IFS-NPLTHLPA----LPSGLCKLWIFGNQLTSLP-----------------VLPPGLQELSVSDNQLASLPA------L 159 (622)
T ss_dssp ECS-CCCCCCCC----CCTTCCEEECCSSCCSCCC-----------------CCCTTCCEEECCSSCCSCCCC------C
T ss_pred CcC-CcCCCCCC----CCCCcCEEECCCCCCCcCC-----------------CCCCCCCEEECcCCcCCCcCC------c
Confidence 988 67777765 5678888888888763321 123788888888776665443 2
Q ss_pred cccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccCC
Q 040318 167 LRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAFA 246 (366)
Q Consensus 167 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~l 246 (366)
+.+|+.|++.++..... . ..+++|+.|++++|.+..++. .+++|+.|++.+| .++.++. .+
T Consensus 160 ~~~L~~L~L~~N~l~~l---~-~~~~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~N-~l~~l~~--~~ 220 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSL---P-MLPSGLQELSVSDNQLASLPT------------LPSELYKLWAYNN-RLTSLPA--LP 220 (622)
T ss_dssp CTTCCEEECCSSCCSCC---C-CCCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSS-CCSSCCC--CC
T ss_pred cCCCCEEECCCCCCCCC---c-ccCCCCcEEECCCCCCCCCCC------------ccchhhEEECcCC-cccccCC--CC
Confidence 34577777777665222 1 445777888887777765432 3466777777766 5555543 24
Q ss_pred CCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCCCCCCCCCCC
Q 040318 247 PNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCPKLKTLPLN 326 (366)
Q Consensus 247 ~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~ 326 (366)
++|+.|++++|.. ..+. ..+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|..
T Consensus 221 ~~L~~L~Ls~N~L-~~lp---------------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~ 279 (622)
T 3g06_A 221 SGLKELIVSGNRL-TSLP---------------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPES 279 (622)
T ss_dssp TTCCEEECCSSCC-SCCC---------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGG
T ss_pred CCCCEEEccCCcc-CcCC---------------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHH
Confidence 6677777766532 2110 23466666666664 3444433 3566666666665 56666655
Q ss_pred CCCCCcceeEEEcchh
Q 040318 327 SSSTKLRNIVISGGKD 342 (366)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (366)
+..+ ..+..++...+
T Consensus 280 l~~l-~~L~~L~L~~N 294 (622)
T 3g06_A 280 LIHL-SSETTVNLEGN 294 (622)
T ss_dssp GGGS-CTTCEEECCSC
T ss_pred Hhhc-cccCEEEecCC
Confidence 4444 45555554443
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.1e-20 Score=170.29 Aligned_cols=225 Identities=15% Similarity=0.141 Sum_probs=173.0
Q ss_pred CCCCcCEEEccC-CCCCc-cchhhhhcCCcccEEECCCCCCCCCcC-ccCccccccccCCEEeccCCCCc-cCchhhhcC
Q 040318 4 RYSNIPSILELS-SNNKV-FEPSWFLSRASWTCLDNGPSRIKNSLT-ELPSGISSLVSLQHLDVSYTDIR-GLPHELTAL 79 (366)
Q Consensus 4 ~~~~L~~L~l~~-~~~~~-l~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~~l~~L~~L~l~~~~i~-~l~~~i~~l 79 (366)
++++|++|++++ +.+.. +|.. +..+++|++|++++| .+. .+|..+..+++|++|++++|.++ .+|..+..+
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n----~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT----NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE----CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred CCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC----eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 689999999995 88874 6666 899999999999999 666 67888999999999999999988 788999999
Q ss_pred ccCCEeeccccccCC-CcChhhhcCCC-CCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc
Q 040318 80 LNLRYLNLERTYHLS-RFPPELICSFS-KLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV 157 (366)
Q Consensus 80 ~~L~~L~L~~c~~~~-~l~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 157 (366)
++|++|++++ +.+. .+|.. +.+++ +|++|++.+|.+ ....+..+..+. |+.|+++++.....
T Consensus 149 ~~L~~L~L~~-N~l~~~~p~~-l~~l~~~L~~L~L~~N~l-------------~~~~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 149 PNLVGITFDG-NRISGAIPDS-YGSFSKLFTSMTISRNRL-------------TGKIPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp TTCCEEECCS-SCCEEECCGG-GGCCCTTCCEEECCSSEE-------------EEECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred CCCCeEECcC-CcccCcCCHH-HhhhhhcCcEEECcCCee-------------eccCChHHhCCc-ccEEECcCCcccCc
Confidence 9999999999 6665 67876 88887 999999999976 122334455554 77777765443221
Q ss_pred ccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCC
Q 040318 158 RNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRV 237 (366)
Q Consensus 158 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l 237 (366)
....+..+++|+.|+++++.+...... . ..+++|++|++++| .+
T Consensus 213 --------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~-~--------~~l~~L~~L~Ls~N-~l 256 (313)
T 1ogq_A 213 --------------------------ASVLFGSDKNTQKIHLAKNSLAFDLGK-V--------GLSKNLNGLDLRNN-RI 256 (313)
T ss_dssp --------------------------CGGGCCTTSCCSEEECCSSEECCBGGG-C--------CCCTTCCEEECCSS-CC
T ss_pred --------------------------CCHHHhcCCCCCEEECCCCceeeecCc-c--------cccCCCCEEECcCC-cc
Confidence 112455678888899888777533221 1 36789999999999 56
Q ss_pred c-ccc-cccCCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccccc
Q 040318 238 K-DLT-WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKS 298 (366)
Q Consensus 238 ~-~l~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 298 (366)
+ .++ .+..+++|++|++++|.....+. ....+++|+.+++++.+.+..
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-------------~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP-------------QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECC-------------CSTTGGGSCGGGTCSSSEEES
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCC-------------CCccccccChHHhcCCCCccC
Confidence 6 344 57789999999999987554443 346789999999998775543
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=9.3e-20 Score=172.18 Aligned_cols=240 Identities=15% Similarity=0.162 Sum_probs=187.1
Q ss_pred cCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCc-hhhhcCccCCEe
Q 040318 8 IPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLP-HELTALLNLRYL 85 (366)
Q Consensus 8 L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~~L~~L 85 (366)
.+.++..+.++..+|..+ .+++++|++++| .++.++ ..+..+++|++|++++|.++.++ ..+.++++|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI---STNTRLLNLHEN----QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp SCEEECCSCCCSSCCSCC---CTTCSEEECCSC----CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCEEEeCCCCcCcCCCCC---CCCCcEEEccCC----cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 467777888888898863 378999999999 778775 56888999999999999998665 578899999999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccc-cccccccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSS-RGVRNFLKFP 164 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~ 164 (366)
++++ +.+..++.+.+..+++|++|++++|.+.. .....+..+++|+.|+++.+.. ..++. ...
T Consensus 118 ~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~--~~~ 181 (440)
T 3zyj_A 118 ELFD-NRLTTIPNGAFVYLSKLKELWLRNNPIES-------------IPSYAFNRIPSLRRLDLGELKRLSYISE--GAF 181 (440)
T ss_dssp ECCS-SCCSSCCTTTSCSCSSCCEEECCSCCCCE-------------ECTTTTTTCTTCCEEECCCCTTCCEECT--TTT
T ss_pred ECCC-CcCCeeCHhHhhccccCceeeCCCCcccc-------------cCHHHhhhCcccCEeCCCCCCCcceeCc--chh
Confidence 9999 78888887668999999999999998722 2234577889999999987443 22221 112
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--c
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--W 242 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~ 242 (366)
..+++|+.|+++++.. .....+..+++|+.|++++|++..+....+ ..+++|+.|+++++ .++.+. .
T Consensus 182 ~~l~~L~~L~L~~n~l--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~n-~l~~~~~~~ 250 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSF--------QGLMHLQKLWMIQS-QIQVIERNA 250 (440)
T ss_dssp TTCSSCCEEECTTSCC--SSCCCCTTCSSCCEEECTTSCCCEECTTTT--------TTCTTCCEEECTTC-CCCEECTTS
T ss_pred hcccccCeecCCCCcC--ccccccCCCcccCEEECCCCccCccChhhh--------ccCccCCEEECCCC-ceeEEChhh
Confidence 3356799999999877 333367888999999999999988866555 47899999999999 677754 4
Q ss_pred ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 243 LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
+..+++|++|+|++|........ .+..+++|+.|++++.
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHD------------LFTPLHHLERIHLHHN 289 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTT------------TTSSCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCCCCccChh------------HhccccCCCEEEcCCC
Confidence 67899999999999865432221 4567899999999853
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.1e-19 Score=172.16 Aligned_cols=240 Identities=15% Similarity=0.119 Sum_probs=186.5
Q ss_pred cCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCc-hhhhcCccCCEe
Q 040318 8 IPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLP-HELTALLNLRYL 85 (366)
Q Consensus 8 L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~~L~~L 85 (366)
.+.++..+.++..+|..+ .+++++|++++| .++.+ +..+.++++|++|++++|.++.++ ..+.++++|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI---PSNTRYLNLMEN----NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSSCCSCC---CTTCSEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEECCCCcCccCCCC---CCCccEEECcCC----cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 467777888888888762 378999999999 77776 556889999999999999998664 678899999999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccc-cccccccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSS-RGVRNFLKFP 164 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~ 164 (366)
+|++ +.+..++.+.+..+++|++|++++|.+.. .....+..+++|+.|+++.+.. ..++. ...
T Consensus 129 ~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~--~~~ 192 (452)
T 3zyi_A 129 ELFD-NWLTVIPSGAFEYLSKLRELWLRNNPIES-------------IPSYAFNRVPSLMRLDLGELKKLEYISE--GAF 192 (452)
T ss_dssp ECCS-SCCSBCCTTTSSSCTTCCEEECCSCCCCE-------------ECTTTTTTCTTCCEEECCCCTTCCEECT--TTT
T ss_pred ECCC-CcCCccChhhhcccCCCCEEECCCCCcce-------------eCHhHHhcCCcccEEeCCCCCCccccCh--hhc
Confidence 9999 78888887768899999999999998722 2234577889999999987433 22221 112
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--c
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--W 242 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~ 242 (366)
..+++|+.|+++++.. .....+..+++|+.|++++|.+..+....+ ..+++|+.|++++| .++.+. .
T Consensus 193 ~~l~~L~~L~L~~n~l--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~n-~l~~~~~~~ 261 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSF--------HGLSSLKKLWVMNS-QVSLIERNA 261 (452)
T ss_dssp TTCTTCCEEECTTSCC--SSCCCCTTCTTCCEEECTTSCCSEECGGGG--------TTCTTCCEEECTTS-CCCEECTTT
T ss_pred cCCCCCCEEECCCCcc--cccccccccccccEEECcCCcCcccCcccc--------cCccCCCEEEeCCC-cCceECHHH
Confidence 3356799999999877 333367788999999999999988866555 47899999999999 677653 4
Q ss_pred ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 243 LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
+..+++|+.|+|++|....... ..+..+++|+.|+++++
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPH------------DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT------------TSSTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCCccCh------------HHhccccCCCEEEccCC
Confidence 6789999999999986443221 14567889999999864
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=4.4e-19 Score=173.37 Aligned_cols=235 Identities=18% Similarity=0.135 Sum_probs=174.4
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEe
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYL 85 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L 85 (366)
++|+.|++++|.+..+|. .+++|++|++++| .++.+|. .+++|++|++++|.++.+|. .+.+|+.|
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N----~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN----QLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC----CCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC----cCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 689999999999998887 4799999999999 7888887 67999999999999998876 67899999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPK 165 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 165 (366)
++++ +.+..+|.. +++|++|++++|.+...+ ..+.+|+.|.++++....++ .
T Consensus 127 ~L~~-N~l~~lp~~----l~~L~~L~Ls~N~l~~l~-----------------~~~~~L~~L~L~~N~l~~l~------~ 178 (622)
T 3g06_A 127 WIFG-NQLTSLPVL----PPGLQELSVSDNQLASLP-----------------ALPSELCKLWAYNNQLTSLP------M 178 (622)
T ss_dssp ECCS-SCCSCCCCC----CTTCCEEECCSSCCSCCC-----------------CCCTTCCEEECCSSCCSCCC------C
T ss_pred ECCC-CCCCcCCCC----CCCCCEEECcCCcCCCcC-----------------CccCCCCEEECCCCCCCCCc------c
Confidence 9999 778888763 489999999999773321 13467888888877766654 2
Q ss_pred ccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccC
Q 040318 166 LLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAF 245 (366)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~ 245 (366)
.+++|+.|+++++....... .+++|+.|++.+|.+..+.. .+++|+.|++++| .++.++ ..
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~------------~~~~L~~L~Ls~N-~L~~lp--~~ 239 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA------------LPSGLKELIVSGN-RLTSLP--VL 239 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC------------CCTTCCEEECCSS-CCSCCC--CC
T ss_pred cCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC------------CCCCCCEEEccCC-ccCcCC--CC
Confidence 34568888888776522111 24678888888877765542 4577888888887 677666 45
Q ss_pred CCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCCC
Q 040318 246 APNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCP 318 (366)
Q Consensus 246 l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 318 (366)
+++|++|++++|.. +.+. . .+++|+.|+++++ .++.++.....+++|+.|++++++
T Consensus 240 l~~L~~L~Ls~N~L-~~lp-------------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 240 PSELKELMVSGNRL-TSLP-------------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSSCC-SCCC-------------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCcCcEEECCCCCC-CcCC-------------c--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 67888888887743 3221 1 4677888888775 455665556667788888887764
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.1e-20 Score=178.57 Aligned_cols=240 Identities=12% Similarity=0.045 Sum_probs=147.1
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.+++|+.|++++|.+..+++..|..+++|++|++++| .++..++ +..+++|++|++++|.++.+|. .++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN----VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS----CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC----CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 3457888888888887776555778888888888888 5665544 6777888888888887765543 37788
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++.. .+++|++|++++|.+. ...+..+..+++|+.|+++++....... ...
T Consensus 103 ~L~L~~-N~l~~~~~~---~l~~L~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l 164 (487)
T 3oja_A 103 TLHAAN-NNISRVSCS---RGQGKKNIYLANNKIT-------------MLRDLDEGCRSRVQYLDLKLNEIDTVNF-AEL 164 (487)
T ss_dssp EEECCS-SCCCCEEEC---CCSSCEEEECCSSCCC-------------SGGGBCGGGGSSEEEEECTTSCCCEEEG-GGG
T ss_pred EEECcC-CcCCCCCcc---ccCCCCEEECCCCCCC-------------CCCchhhcCCCCCCEEECCCCCCCCcCh-HHH
Confidence 888887 566665542 4677888888887662 1223345566777777777666554321 111
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc-c
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT-W 242 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~-~ 242 (366)
...+++|+.|+++++.. ........+++|+.|++++|.+..++.. + ..+++|+.|++++| .++.++ .
T Consensus 165 ~~~l~~L~~L~Ls~N~l--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~--------~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLAFMGPE-F--------QSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp GGGTTTCCEEECTTSCC--CEEECCCCCTTCCEEECCSSCCCEECGG-G--------GGGTTCSEEECTTS-CCCEECTT
T ss_pred hhhCCcccEEecCCCcc--ccccccccCCCCCEEECCCCCCCCCCHh-H--------cCCCCccEEEecCC-cCcccchh
Confidence 11234577777776665 2222333466777777777666655432 1 24566777777776 455554 3
Q ss_pred ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 243 LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
+..+++|+.|++++|.......+ ..+..++.|+.+.+..+
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~-----------~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLR-----------DFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHH-----------HHHTTCHHHHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchH-----------HHHHhCCCCcEEecccc
Confidence 45566777777766654422111 13445566666666533
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=7.1e-19 Score=166.49 Aligned_cols=264 Identities=17% Similarity=0.159 Sum_probs=149.8
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEe
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYL 85 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L 85 (366)
++|++|++++|.+..+| . +..+++|++|++++| .++.+|..+ .+|++|++++|.++.+| .++.+++|++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N----~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN----SLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS----CCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC----cCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEE
Confidence 68999999999999888 3 899999999999999 777777643 58999999999888887 58889999999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPK 165 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 165 (366)
++++ +.+..+|.. .++|++|++.+|.+... + .+..+++|+.|+++++....++..
T Consensus 201 ~l~~-N~l~~l~~~----~~~L~~L~l~~n~l~~l--------------p-~~~~l~~L~~L~l~~N~l~~l~~~----- 255 (454)
T 1jl5_A 201 YADN-NSLKKLPDL----PLSLESIVAGNNILEEL--------------P-ELQNLPFLTTIYADNNLLKTLPDL----- 255 (454)
T ss_dssp ECCS-SCCSSCCCC----CTTCCEEECCSSCCSSC--------------C-CCTTCTTCCEEECCSSCCSSCCSC-----
T ss_pred ECCC-CcCCcCCCC----cCcccEEECcCCcCCcc--------------c-ccCCCCCCCEEECCCCcCCccccc-----
Confidence 9988 667666652 25888888888876221 1 356778888888887766554432
Q ss_pred ccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeecccc-------Cc--cccccccCCCCCcEEeEecCCC
Q 040318 166 LLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCT-------GE--VQKVLQCGFRSLHLASIAFCSR 236 (366)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~-------~~--~~~~p~~~~~~L~~L~l~~~~~ 236 (366)
..+|+.|+++++....... .+++|+.|++++|.++.++.... .. -..++ ...++|+.|+++++ .
T Consensus 256 -~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~-~~~~~L~~L~Ls~N-~ 328 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC-DLPPSLEELNVSNN-K 328 (454)
T ss_dssp -CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC-CCCTTCCEEECCSS-C
T ss_pred -ccccCEEECCCCcccccCc----ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCccc-CCcCcCCEEECCCC-c
Confidence 2457777777766522111 12566777776666554321000 00 00000 11135666666655 3
Q ss_pred CcccccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccc--cccCCCcCC--------
Q 040318 237 VKDLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLK--SIYQGALPL-------- 306 (366)
Q Consensus 237 l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~-------- 306 (366)
++.++. .+++|++|++++|... .+ + . .+++|++|+++++.-.. .++.....+
T Consensus 329 l~~lp~--~~~~L~~L~L~~N~l~-~l-p------------~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 329 LIELPA--LPPRLERLIASFNHLA-EV-P------------E--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCS-CC-C------------C--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred cccccc--cCCcCCEEECCCCccc-cc-c------------c--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence 444432 2456666666655422 21 1 1 35677777776643222 233222222
Q ss_pred -----CCccEEeccCCCCCC---CCCCCCCCC
Q 040318 307 -----PQLKEIRVTQCPKLK---TLPLNSSST 330 (366)
Q Consensus 307 -----~~L~~L~l~~c~~l~---~lp~~~~~~ 330 (366)
++|+.|++++++ ++ .+|..+..+
T Consensus 391 i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 391 VPELPQNLKQLHVETNP-LREFPDIPESVEDL 421 (454)
T ss_dssp --------------------------------
T ss_pred cccccCcCCEEECCCCc-CCccccchhhHhhe
Confidence 667777777754 33 455444444
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=7.1e-20 Score=165.43 Aligned_cols=263 Identities=16% Similarity=0.090 Sum_probs=187.1
Q ss_pred cCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCchhhhcCccCCEee
Q 040318 8 IPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLN 86 (366)
Q Consensus 8 L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~ 86 (366)
++..++..+.+...+...+..+++|++|++++| .++.++ ..+..+++|++|++++|.++..+. +..+++|++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGN----PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS----CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCC----ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEE
Confidence 445556666666666666788889999999999 778775 468889999999999999886654 88999999999
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKL 166 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 166 (366)
+++ +.+..++ ..++|++|++.+|.+.... ...+++|+.|+++++.....+... ...
T Consensus 87 Ls~-n~l~~l~-----~~~~L~~L~l~~n~l~~~~----------------~~~~~~L~~L~l~~N~l~~~~~~~--~~~ 142 (317)
T 3o53_A 87 LNN-NYVQELL-----VGPSIETLHAANNNISRVS----------------CSRGQGKKNIYLANNKITMLRDLD--EGC 142 (317)
T ss_dssp CCS-SEEEEEE-----ECTTCCEEECCSSCCSEEE----------------ECCCSSCEEEECCSSCCCSGGGBC--TGG
T ss_pred CcC-Ccccccc-----CCCCcCEEECCCCccCCcC----------------ccccCCCCEEECCCCCCCCccchh--hhc
Confidence 999 5666544 3489999999999773221 123578899999887776653321 123
Q ss_pred cccccEEEEeccCCCCcCccch-hhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc-ccc
Q 040318 167 LRITQALSISDCEIPLLNVSHL-AYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT-WLA 244 (366)
Q Consensus 167 ~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~-~l~ 244 (366)
+++|+.|+++++.........+ ..+++|+.|++++|.++.+... ..+++|+.|++++| .++.++ .+.
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~l~~L~~L~Ls~N-~l~~l~~~~~ 211 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSSN-KLAFMGPEFQ 211 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCSS-CCCEECGGGG
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----------cccccCCEEECCCC-cCCcchhhhc
Confidence 5668888888877632222233 4678888888888888776431 24788888888888 677654 466
Q ss_pred CCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccc-ccccCCCcCCCCccEEeccCCCCCCCC
Q 040318 245 FAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENL-KSIYQGALPLPQLKEIRVTQCPKLKTL 323 (366)
Q Consensus 245 ~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~~l 323 (366)
.+++|++|++++|... .+.. .+..+++|+.|++++++-. ..+......+++|+.+++.+++.++..
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECT------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ccCcccEEECcCCccc-chhh------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 7888888888887543 3322 5567788888888876433 233333445778888888877776654
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.8e-19 Score=158.15 Aligned_cols=196 Identities=17% Similarity=0.156 Sum_probs=132.7
Q ss_pred cEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCc-hhhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEE
Q 040318 33 TCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLP-HELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLR 111 (366)
Q Consensus 33 ~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~ 111 (366)
.+++.+++ .++.+|..+ .++|++|++++|.++.++ ..+..+++|++|++++ +.+..++...+.++++|++|+
T Consensus 14 ~~~~c~~~----~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQ----GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSS----CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcC----CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEe
Confidence 67888888 788888654 479999999999999776 4689999999999999 678877544489999999999
Q ss_pred ccCCC-CCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCccchhh
Q 040318 112 MLESG-ADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSHLAY 190 (366)
Q Consensus 112 l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 190 (366)
+++|. +.. ..+..+..+++|+.|+++++....... .....+++|++|+++++.........+..
T Consensus 87 l~~n~~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 151 (285)
T 1ozn_A 87 LSDNAQLRS-------------VDPATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRD 151 (285)
T ss_dssp CCSCTTCCC-------------CCTTTTTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCccc-------------cCHHHhcCCcCCCEEECCCCcCCEECH--hHhhCCcCCCEEECCCCcccccCHhHhcc
Confidence 99996 421 224557788999999998776654321 11122345666666666552222224556
Q ss_pred hcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccc--ccccCCCCccEEEEEccCC
Q 040318 191 MEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDL--TWLAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 191 ~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l--~~l~~l~~L~~L~L~~c~~ 259 (366)
+++|+.|++++++++.+....+ ..+++|+.|++++| .++.+ ..+..+++|+.|++++|..
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAF--------RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--------TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccEEECCCCcccccCHHHh--------cCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcC
Confidence 6666666666666665554333 24566666666666 44443 2344566666666666543
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.8e-18 Score=163.79 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=170.6
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEe
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYL 85 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L 85 (366)
++|+.|++++|.+..++.. .++|++|++++| .++.+| .++.+++|++|++++|.++.+|..+ .+|++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n----~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN----QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC----CTTCCEEECCSS----CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred CCCcEEECCCCccCcccCC----CCCCCEEECcCC----CCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEE
Confidence 5677777777777665542 279999999999 778888 4899999999999999998887644 599999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPK 165 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 165 (366)
++++ +.+..+|. +.++++|++|++.+|.+...+ ....+|+.|+++++....++.+ .
T Consensus 179 ~L~~-n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~-----------------~~~~~L~~L~l~~n~l~~lp~~----~ 234 (454)
T 1jl5_A 179 AAGN-NQLEELPE--LQNLPFLTAIYADNNSLKKLP-----------------DLPLSLESIVAGNNILEELPEL----Q 234 (454)
T ss_dssp ECCS-SCCSSCCC--CTTCTTCCEEECCSSCCSSCC-----------------CCCTTCCEEECCSSCCSSCCCC----T
T ss_pred ECcC-CcCCcCcc--ccCCCCCCEEECCCCcCCcCC-----------------CCcCcccEEECcCCcCCccccc----C
Confidence 9999 68888884 899999999999999773221 1125899999998877766543 3
Q ss_pred ccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccC
Q 040318 166 LLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAF 245 (366)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~ 245 (366)
.+++|+.|+++++...+... .+++|+.|+++++.++.++. .+++|+.|++++| .++.++.+
T Consensus 235 ~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~------------~~~~L~~L~ls~N-~l~~l~~~-- 295 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE------------LPQSLTFLDVSEN-IFSGLSEL-- 295 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSS-CCSEESCC--
T ss_pred CCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc------------ccCcCCEEECcCC-ccCcccCc--
Confidence 45679999999987632221 24789999999988876543 2456666666666 34443321
Q ss_pred CCCccEEEEEccCCccccccc-cccccc----ccccccccccccccccccccccccccccCCCcCCCCccEEeccCCCCC
Q 040318 246 APNLKIIVIMHCDDLEEIISV-EKLNQL----SDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCPKL 320 (366)
Q Consensus 246 l~~L~~L~L~~c~~~~~~~~~-~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 320 (366)
.++|++|++++|.... +... .....+ ..+...-..+++|++|+++++ .++.++. .+++|+.|+++++ ++
T Consensus 296 ~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N-~l 369 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN-PL 369 (454)
T ss_dssp CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CC
T ss_pred CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCccccccccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC-CC
Confidence 1345555554443221 0000 000000 000001112578888888776 4444443 4678888888876 44
Q ss_pred CC
Q 040318 321 KT 322 (366)
Q Consensus 321 ~~ 322 (366)
+.
T Consensus 370 ~~ 371 (454)
T 1jl5_A 370 RE 371 (454)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.1e-18 Score=172.04 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=63.3
Q ss_pred cCCCCCcEEeEecCCCCcccc--cccCCCCccEEEEEccCCccccccccccccccccccccccccccccccccccccccc
Q 040318 221 CGFRSLHLASIAFCSRVKDLT--WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKS 298 (366)
Q Consensus 221 ~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 298 (366)
..+++|+.|++++| .++.++ .+..+++|++|+|++|....-.. ..+..+++|++|+++++. +..
T Consensus 491 ~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~------------~~~~~l~~L~~L~Ls~N~-l~~ 556 (635)
T 4g8a_A 491 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT------------FPYKCLNSLQVLDYSLNH-IMT 556 (635)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCCC------------GGGTTCTTCCEEECTTSC-CCB
T ss_pred hhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCCh------------hHHhCCCCCCEEECCCCc-CCC
Confidence 56789999999999 788864 46789999999999986433222 156788999999999864 444
Q ss_pred cc-CCCcCC-CCccEEeccCCC
Q 040318 299 IY-QGALPL-PQLKEIRVTQCP 318 (366)
Q Consensus 299 ~~-~~~~~~-~~L~~L~l~~c~ 318 (366)
+. .....+ ++|+.|+++++|
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCC
T ss_pred CCHHHHHhhhCcCCEEEeeCCC
Confidence 43 334456 589999998754
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=6.2e-20 Score=165.44 Aligned_cols=240 Identities=14% Similarity=0.119 Sum_probs=112.3
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCc--cCcccc-------ccccCCEEeccCCCCc-cCchhh
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTE--LPSGIS-------SLVSLQHLDVSYTDIR-GLPHEL 76 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~--l~~~~~-------~l~~L~~L~l~~~~i~-~l~~~i 76 (366)
+|+.|++++|.+ .+|..+... |++|++++| .+.. +|..+. .+++|++|++++|+++ .+|..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n----~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRL----TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEE----EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CceeEeeccccc-ccHHHHHHH---Hhhcccccc----cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345555555555 445442221 455555555 3322 333222 3455555555555544 344433
Q ss_pred --hcCccCCEeeccccccCCCcChhhhcCC-----CCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEE
Q 040318 77 --TALLNLRYLNLERTYHLSRFPPELICSF-----SKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISF 149 (366)
Q Consensus 77 --~~l~~L~~L~L~~c~~~~~l~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 149 (366)
..+++|++|++++ +.+..+|.. +..+ ++|++|++++|.+.. ..+..+..+++|+.|++
T Consensus 116 ~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 116 LEATGPDLNILNLRN-VSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLN-------------FSCEQVRVFPALSTLDL 180 (312)
T ss_dssp SSCCSCCCSEEEEES-CBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCC-------------CCTTTCCCCSSCCEEEC
T ss_pred HHhcCCCccEEEccC-CCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCcc-------------chHHHhccCCCCCEEEC
Confidence 4555555555555 444444332 3333 555555555554411 11233444555555555
Q ss_pred Eecccccccccc-c-cccccccccEEEEeccCCCCcCcc---chhhhcccCceEecccccceeec-cccCccccccccCC
Q 040318 150 SLYSSRGVRNFL-K-FPKLLRITQALSISDCEIPLLNVS---HLAYMEHLKDLVIDNSNLEELKT-DCTGEVQKVLQCGF 223 (366)
Q Consensus 150 ~~~~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~l~~l~~-~~~~~~~~~p~~~~ 223 (366)
+++.......+. . ....+++|++|+++++........ .+..+++|+.|++++|.+..... ... ..+
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~~l 252 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC--------DWP 252 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC--------CCC
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh--------hhc
Confidence 544432210000 0 002233455555555544111111 22345677777777666654331 111 235
Q ss_pred CCCcEEeEecCCCCcccccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 224 RSLHLASIAFCSRVKDLTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 224 ~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
++|+.|++++| .++.++.... ++|++|++++|.... . + .+..+++|++|++++.
T Consensus 253 ~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~l~~-~-p------------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 253 SQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSYNRLDR-N-P------------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp TTCCEEECTTS-CCSSCCSSCC-SEEEEEECCSSCCCS-C-C------------CTTTSCEEEEEECTTC
T ss_pred CCCCEEECCCC-ccChhhhhcc-CCceEEECCCCCCCC-C-h------------hHhhCCCCCEEeccCC
Confidence 66777777777 4555543222 667777777665322 2 1 3455677777777654
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.1e-18 Score=156.83 Aligned_cols=192 Identities=19% Similarity=0.256 Sum_probs=113.7
Q ss_pred hcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCC
Q 040318 27 LSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSK 106 (366)
Q Consensus 27 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~ 106 (366)
..+++|++|++++| .++.++ .+..+++|++|++++|.++.++. +..+++|++|++++ +.+..++. +..+++
T Consensus 38 ~~l~~L~~L~l~~~----~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGT----GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVSA--IAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTS----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCGG--GTTCTT
T ss_pred HHcCCcCEEEeeCC----CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCchh--hcCCCC
Confidence 34555666666665 445554 25555666666666665555544 55556666666655 44555442 555666
Q ss_pred CcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCcc
Q 040318 107 LEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVS 186 (366)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 186 (366)
|++|++++|.+... ..+..+++|+.|+++++.....+.+ ..+++|+.|+++++.. ....
T Consensus 109 L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l--~~~~ 167 (308)
T 1h6u_A 109 IKTLDLTSTQITDV---------------TPLAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGNAQV--SDLT 167 (308)
T ss_dssp CCEEECTTSCCCCC---------------GGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSCC--CCCG
T ss_pred CCEEECCCCCCCCc---------------hhhcCCCCCCEEECCCCccCcCccc----cCCCCccEEEccCCcC--CCCh
Confidence 66666665554111 1245555555555555544443331 1233466666665544 1111
Q ss_pred chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccCCCCccEEEEEccCC
Q 040318 187 HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 187 ~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~L~~c~~ 259 (366)
.+..+++|+.|+++++.+..+.. . ..+++|+.|++++| .+++++.+..+++|+.|++++|..
T Consensus 168 ~l~~l~~L~~L~l~~n~l~~~~~--l--------~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 168 PLANLSKLTTLKADDNKISDISP--L--------ASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG--G--------GGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred hhcCCCCCCEEECCCCccCcChh--h--------cCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCee
Confidence 35667788888888877765543 1 46788888888888 677777778888888888888764
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=1.8e-18 Score=152.95 Aligned_cols=201 Identities=17% Similarity=0.133 Sum_probs=107.8
Q ss_pred CcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccCCEeeccccccCCCcChhhhcCCCCC
Q 040318 30 ASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRYLNLERTYHLSRFPPELICSFSKL 107 (366)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L 107 (366)
++|++|++++| .++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++ +.+..++.+.+.++++|
T Consensus 28 ~~l~~L~ls~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN----PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC----CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCC----cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-CccCccChhhhcCCccc
Confidence 34555555555 4444433 34455555555555555554332 345555555555555 44444443335555555
Q ss_pred cEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCccc
Q 040318 108 EVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSH 187 (366)
Q Consensus 108 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 187 (366)
++|++.+|.+... ....+..+++|+.|+++++...... +......+++|++|+++++.........
T Consensus 103 ~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 103 QKLVAVETNLASL-------------ENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEEECTTSCCCCS-------------TTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred cEEECCCCCcccc-------------CchhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 5555555544111 0112444555555555554433311 0111122334556666555542222224
Q ss_pred hhhhcccC----ceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc--ccCCCCccEEEEEccCC
Q 040318 188 LAYMEHLK----DLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW--LAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 188 l~~~~~L~----~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~L~~L~L~~c~~ 259 (366)
+..+++|+ .++++++.+..+....+ ...+|+.|++++| .++.++. +..+++|++|++++|+.
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSS---------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred hhhhhhccccceeeecCCCcccccCcccc---------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence 55556665 67778888877765433 2347899999988 5777653 46788899999887753
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=2.1e-18 Score=155.10 Aligned_cols=195 Identities=15% Similarity=0.262 Sum_probs=163.4
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
++++|+.|+++++.+..++. +..+++|++|++++| .++.++. +..+++|++|++++|.++.++ .+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n----~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN----QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS----CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC----cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 46789999999999998874 889999999999999 7888877 889999999999999998876 688999999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++. +..+++|++|++.+|.+... ..+..+++|+.|+++++.....+.+
T Consensus 111 ~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~l--- 169 (308)
T 1h6u_A 111 TLDLTS-TQITDVTP--LAGLSNLQVLYLDLNQITNI---------------SPLAGLTNLQYLSIGNAQVSDLTPL--- 169 (308)
T ss_dssp EEECTT-SCCCCCGG--GTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCCEEECCSSCCCCCGGG---
T ss_pred EEECCC-CCCCCchh--hcCCCCCCEEECCCCccCcC---------------ccccCCCCccEEEccCCcCCCChhh---
Confidence 999999 77888876 89999999999999987332 1277889999999999887776553
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT 241 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~ 241 (366)
..+++|+.|+++++.. .....+..+++|+.|++++|.+..+.. + ..+++|+.|++++| .++..+
T Consensus 170 -~~l~~L~~L~l~~n~l--~~~~~l~~l~~L~~L~L~~N~l~~~~~--l--------~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 170 -ANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSP--L--------ANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp -TTCTTCCEEECCSSCC--CCCGGGGGCTTCCEEECTTSCCCBCGG--G--------TTCTTCCEEEEEEE-EEECCC
T ss_pred -cCCCCCCEEECCCCcc--CcChhhcCCCCCCEEEccCCccCcccc--c--------cCCCCCCEEEccCC-eeecCC
Confidence 3456799999999887 333357889999999999998876652 2 57899999999999 455543
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2.9e-19 Score=174.95 Aligned_cols=287 Identities=14% Similarity=0.089 Sum_probs=156.5
Q ss_pred CCCCcCEEEccCCCCCcc----chhhhhcCCcccEEECCCCCCCCCcC-----ccCccccccccCCEEeccCCCCccCch
Q 040318 4 RYSNIPSILELSSNNKVF----EPSWFLSRASWTCLDNGPSRIKNSLT-----ELPSGISSLVSLQHLDVSYTDIRGLPH 74 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l----~~~~~~~~~~L~~L~l~~~~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~i~~l~~ 74 (366)
.|++|++|++++|.+.+. ....+..+++|++|+++++ .++ .++..+..+++|+.|++++|.+..++.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n----~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~ 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT----EFAKISPKDLETIARNCRSLVSVKVGDFEILELVG 237 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC----CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc----CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence 467788888887765432 1223556777888888777 443 233334567888888888877766776
Q ss_pred hhhcCccCCEeecccccc--------------------------CCCcChhhhcCCCCCcEEEccCCCCCCccccccccc
Q 040318 75 ELTALLNLRYLNLERTYH--------------------------LSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLS 128 (366)
Q Consensus 75 ~i~~l~~L~~L~L~~c~~--------------------------~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 128 (366)
.+..+++|++|+++.+.. ...++.. +..+++|++|++.+|.+
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l----------- 305 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALL----------- 305 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCC-----------
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCCCcEEecCCCcC-----------
Confidence 677777777777753211 1123332 55667777777777754
Q ss_pred cchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEec----------cCCCCcCcc--chhhhcccCc
Q 040318 129 EDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISD----------CEIPLLNVS--HLAYMEHLKD 196 (366)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~--~l~~~~~L~~ 196 (366)
........+..+++|+.|.+.. ...+ ..+......+++|++|++.+ |...+.... ....+++|++
T Consensus 306 -~~~~~~~~~~~~~~L~~L~L~~-~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 306 -ETEDHCTLIQKCPNLEVLETRN-VIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp -CHHHHHHHHTTCTTCCEEEEEG-GGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred -CHHHHHHHHHhCcCCCEEeccC-ccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 1122334466778888887772 2111 12222223455677888874 544111111 2344677777
Q ss_pred eEecccccceeeccccC-------------------ccc-----ccc--ccCCCCCcEEeEecCCC-Ccc--ccccc-CC
Q 040318 197 LVIDNSNLEELKTDCTG-------------------EVQ-----KVL--QCGFRSLHLASIAFCSR-VKD--LTWLA-FA 246 (366)
Q Consensus 197 L~l~~~~l~~l~~~~~~-------------------~~~-----~~p--~~~~~~L~~L~l~~~~~-l~~--l~~l~-~l 246 (366)
|++..+.+........+ ... .++ ...+++|+.|++++|.+ +++ +..++ .+
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 77755444332211110 000 000 02345555555544431 222 11111 35
Q ss_pred CCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccc--cCCCcCCCCccEEeccCCCCCCC
Q 040318 247 PNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSI--YQGALPLPQLKEIRVTQCPKLKT 322 (366)
Q Consensus 247 ~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c~~l~~ 322 (366)
++|++|+|++|......+ .....++++|++|++++|. ++.. ......+++|+.|++++|+ ++.
T Consensus 463 ~~L~~L~L~~n~l~~~~~-----------~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGL-----------MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp TTCCEEEECSCCSSHHHH-----------HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ccceEeeccCCCCCHHHH-----------HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 556666665554222111 1134567899999999987 4332 2223358999999999997 664
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.7e-18 Score=150.51 Aligned_cols=197 Identities=19% Similarity=0.191 Sum_probs=139.5
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCchh-hhcCccCCE
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPHE-LTALLNLRY 84 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~~ 84 (366)
+.+.+++++++++.+|.. + .++|++|++++| .++.++. .+..+++|++|++++|.++.++.. +..+++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSN----KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-C--CTTCSEEECCSS----CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCccCCC-C--CCCCCEEECcCC----CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 467888888888888875 2 367889999998 7777764 577889999999999988877765 477889999
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|++++ +.+..++.+.+.++++|++|++.+|.+... .+..+..+++|+.|+++++.....
T Consensus 90 L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~Ls~n~l~~~------- 148 (270)
T 2o6q_A 90 LWVTD-NKLQALPIGVFDQLVNLAELRLDRNQLKSL-------------PPRVFDSLTKLTYLSLGYNELQSL------- 148 (270)
T ss_dssp EECCS-SCCCCCCTTTTTTCSSCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCCCC-------
T ss_pred EECCC-CcCCcCCHhHcccccCCCEEECCCCccCee-------------CHHHhCcCcCCCEEECCCCcCCcc-------
Confidence 99988 777888766578888999999988876222 123345566666666665443322
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc--
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW-- 242 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~-- 242 (366)
....+..+++|+.|++.++.+..+....+ ..+++|+.|++++| .++.++.
T Consensus 149 -------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~~ 200 (270)
T 2o6q_A 149 -------------------PKGVFDKLTSLKELRLYNNQLKRVPEGAF--------DKLTELKTLKLDNN-QLKRVPEGA 200 (270)
T ss_dssp -------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSS-CCSCCCTTT
T ss_pred -------------------CHhHccCCcccceeEecCCcCcEeChhHh--------ccCCCcCEEECCCC-cCCcCCHHH
Confidence 11234566777777777777766654333 35677888888877 5666553
Q ss_pred ccCCCCccEEEEEccCC
Q 040318 243 LAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~~ 259 (366)
+..+++|+.|++++|+.
T Consensus 201 ~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred hccccCCCEEEecCCCe
Confidence 55677888888877653
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=4.2e-20 Score=166.54 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=166.4
Q ss_pred hhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCc--cCchhhh-------cCccCCEeeccccccCC-C
Q 040318 26 FLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIR--GLPHELT-------ALLNLRYLNLERTYHLS-R 95 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~--~l~~~i~-------~l~~L~~L~L~~c~~~~-~ 95 (366)
+...++|++|++++| .+ .+|..+... |+.|++++|.+. .+|..+. ++++|++|++++ +.+. .
T Consensus 39 ~~~~~~L~~l~l~~n----~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVD----TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN-LEVTGT 110 (312)
T ss_dssp EEEEEECTTHHHHCC----TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEE-EBCBSC
T ss_pred EccCCCceeEeeccc----cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccC-Ccccch
Confidence 456677888888888 66 777766544 888888888775 4565554 688999999998 5554 5
Q ss_pred cChhhh-cCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcC--CCCcceEEEEeccccccccccccccccccccE
Q 040318 96 FPPELI-CSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLC--LKLLNLISFSLYSSRGVRNFLKFPKLLRITQA 172 (366)
Q Consensus 96 l~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 172 (366)
+|..++ ..+++|++|++++|.+... ......+.. +++|++|+++++.....+. .....+++|++
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~ 177 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATR-----------DAWLAELQQWLKPGLKVLSIAQAHSLNFSC--EQVRVFPALST 177 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSS-----------SSHHHHHHTTCCTTCCEEEEESCSCCCCCT--TTCCCCSSCCE
T ss_pred hHHHHHHhcCCCccEEEccCCCCcch-----------hHHHHHHHHhhcCCCcEEEeeCCCCccchH--HHhccCCCCCE
Confidence 666522 7889999999999877322 112222222 2889999999887765431 11223566999
Q ss_pred EEEeccCCCCcCcc----chhhhcccCceEecccccceeec---cccCccccccccCCCCCcEEeEecCCCCccc---cc
Q 040318 173 LSISDCEIPLLNVS----HLAYMEHLKDLVIDNSNLEELKT---DCTGEVQKVLQCGFRSLHLASIAFCSRVKDL---TW 242 (366)
Q Consensus 173 L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~l~~---~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l---~~ 242 (366)
|+++++...+.... .+..+++|++|++++|+++.++. ..+ ..+++|+.|++++| .++.. +.
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~ 248 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA--------AARVQLQGLDLSHN-SLRDAAGAPS 248 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH--------HTTCCCSEEECTTS-CCCSSCCCSC
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH--------hcCCCCCEEECCCC-cCCcccchhh
Confidence 99988875111111 23678899999998888774321 111 35688999999998 56663 33
Q ss_pred ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccCCC
Q 040318 243 LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQCP 318 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 318 (366)
+..+++|++|++++|... .+.. .+. ++|++|+++++ .++.++. ...+++|+.|++++.+
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~------------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPK------------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCS------------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhcCCCCEEECCCCccC-hhhh------------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 456789999999888644 3321 222 78999999875 5555544 6678899999998863
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.2e-18 Score=158.39 Aligned_cols=223 Identities=17% Similarity=0.095 Sum_probs=134.5
Q ss_pred CcCEEEccCCCCCccchhhhhcC--CcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCcc--CchhhhcCccC
Q 040318 7 NIPSILELSSNNKVFEPSWFLSR--ASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRG--LPHELTALLNL 82 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~--~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~--l~~~i~~l~~L 82 (366)
.++.++++++.+. +..+..+ ++++.|+++++ .++..+..+..+++|++|++++|.+.. ++..+..+++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n----~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS----FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC----EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCc----cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 4677888877665 2335556 78888888888 666665556678888888888887762 67777888888
Q ss_pred CEeeccccccCCC-cChhhhcCCCCCcEEEccCC-CCCCccccccccccchHHHHHhhcCCCCcceEEEEec-ccccccc
Q 040318 83 RYLNLERTYHLSR-FPPELICSFSKLEVLRMLES-GADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLY-SSRGVRN 159 (366)
Q Consensus 83 ~~L~L~~c~~~~~-l~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~ 159 (366)
++|++++| .+.. .+.. +..+++|++|++.+| .+ ........+..+++|+.|+++++ ...+. .
T Consensus 121 ~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~l------------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~ 185 (336)
T 2ast_B 121 QNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSGF------------SEFALQTLLSSCSRLDELNLSWCFDFTEK-H 185 (336)
T ss_dssp SEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBSC------------CHHHHHHHHHHCTTCCEEECCCCTTCCHH-H
T ss_pred CEEeCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCCC------------CHHHHHHHHhcCCCCCEEcCCCCCCcChH-H
Confidence 88888884 4543 3333 777888888888888 33 11234455666777777777665 33221 0
Q ss_pred ccccccccccccEEEEeccCCCCcCccchhhhc-ccCceEecccc--cceeeccccCccccccccCCCCCcEEeEecCCC
Q 040318 160 FLKFPKLLRITQALSISDCEIPLLNVSHLAYME-HLKDLVIDNSN--LEELKTDCTGEVQKVLQCGFRSLHLASIAFCSR 236 (366)
Q Consensus 160 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~ 236 (366)
+.. .+..++ +|++|+++++. +.+-..... ...+++|+.|++++|..
T Consensus 186 ~~~------------------------~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-------~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 186 VQV------------------------AVAHVSETITQLNLSGYRKNLQKSDLSTL-------VRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp HHH------------------------HHHHSCTTCCEEECCSCGGGSCHHHHHHH-------HHHCTTCSEEECTTCTT
T ss_pred HHH------------------------HHHhcccCCCEEEeCCCcccCCHHHHHHH-------HhhCCCCCEEeCCCCCc
Confidence 111 234455 55556555542 221100000 02466777777777643
Q ss_pred Ccc--cccccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 237 VKD--LTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 237 l~~--l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
+++ +..++.+++|++|++++|..+.+... ..+..+++|++|++++|
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----------GGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-----------HHHhcCCCCCEEeccCc
Confidence 443 34555667777777777753322110 13455777777777766
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=2.6e-18 Score=151.70 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=114.7
Q ss_pred EEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeecccc
Q 040318 11 ILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERT 90 (366)
Q Consensus 11 L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c 90 (366)
+.+..+.+.+... ...+++|+.|+++++ .++.++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 24 l~l~~~~~~~~~~--~~~l~~L~~L~l~~~----~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~- 94 (272)
T 3rfs_A 24 ANLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG- 94 (272)
T ss_dssp HHHTCSCTTSEEC--HHHHTTCCEEECTTS----CCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT-
T ss_pred HHhcCcccccccc--cccccceeeeeeCCC----Ccccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC-
Confidence 3444444544333 456677777777777 5565554 666777777777777776654 566777777777777
Q ss_pred ccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccc
Q 040318 91 YHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRIT 170 (366)
Q Consensus 91 ~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 170 (366)
+.+..++...+.++++|++|++.+|.+... ....+..+++|+.|+++++.....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~------------- 148 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSL-------------PDGVFDKLTNLTYLNLAHNQLQSL------------- 148 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCC-------------CTTTTTTCTTCCEEECCSSCCCCC-------------
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCcc-------------CHHHhccCCCCCEEECCCCccCcc-------------
Confidence 566666655466777777777777765211 112234445555555544332221
Q ss_pred cEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc--ccCCCC
Q 040318 171 QALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW--LAFAPN 248 (366)
Q Consensus 171 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~ 248 (366)
....+..+++|+.|++++|++..+....+ ..+++|+.|++++| .++.++. +..+++
T Consensus 149 -------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 149 -------------PKGVFDKLTNLTELDLSYNQLQSLPEGVF--------DKLTQLKDLRLYQN-QLKSVPDGVFDRLTS 206 (272)
T ss_dssp -------------CTTTTTTCTTCCEEECCSSCCCCCCTTTT--------TTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred -------------CHHHhccCccCCEEECCCCCcCccCHHHh--------cCCccCCEEECCCC-cCCccCHHHHhCCcC
Confidence 11134455667777776666665544333 35677777777777 4555543 456777
Q ss_pred ccEEEEEccC
Q 040318 249 LKIIVIMHCD 258 (366)
Q Consensus 249 L~~L~L~~c~ 258 (366)
|++|++++|.
T Consensus 207 L~~L~l~~N~ 216 (272)
T 3rfs_A 207 LQYIWLHDNP 216 (272)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 7777777663
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=7.6e-18 Score=150.05 Aligned_cols=198 Identities=16% Similarity=0.107 Sum_probs=144.9
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchhhhcCccC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHELTALLNL 82 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L 82 (366)
++++++.+++++++++.+|..+ .+++++|++++| .++.+ +..+..+++|++|++++|.++.++.. +.+++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN----LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS----CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC----cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 5788899999999998888763 368899999999 67776 45678899999999999988877654 788899
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccc
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLK 162 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 162 (366)
++|++++ +.+..+|.. +..+++|++|++++|.+... .+..+..+++|+.|+++++.....
T Consensus 80 ~~L~Ls~-N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l-------------~~~~~~~l~~L~~L~L~~N~l~~~----- 139 (290)
T 1p9a_G 80 GTLDLSH-NQLQSLPLL-GQTLPALTVLDVSFNRLTSL-------------PLGALRGLGELQELYLKGNELKTL----- 139 (290)
T ss_dssp CEEECCS-SCCSSCCCC-TTTCTTCCEEECCSSCCCCC-------------CSSTTTTCTTCCEEECTTSCCCCC-----
T ss_pred CEEECCC-CcCCcCchh-hccCCCCCEEECCCCcCccc-------------CHHHHcCCCCCCEEECCCCCCCcc-----
Confidence 9999998 788888875 78889999999998876222 123355566666666655443322
Q ss_pred cccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc-
Q 040318 163 FPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT- 241 (366)
Q Consensus 163 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~- 241 (366)
....+..+++|+.|++++|+++.+....+ ..+++|+.|+++++ .++.++
T Consensus 140 ---------------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--------~~l~~L~~L~L~~N-~l~~ip~ 189 (290)
T 1p9a_G 140 ---------------------PPGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQEN-SLYTIPK 189 (290)
T ss_dssp ---------------------CTTTTTTCTTCCEEECTTSCCSCCCTTTT--------TTCTTCCEEECCSS-CCCCCCT
T ss_pred ---------------------ChhhcccccCCCEEECCCCcCCccCHHHh--------cCcCCCCEEECCCC-cCCccCh
Confidence 22244567788888888887776665444 35778888888888 566665
Q ss_pred cccCCCCccEEEEEccCC
Q 040318 242 WLAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 242 ~l~~l~~L~~L~L~~c~~ 259 (366)
.+...++|+.|++++++.
T Consensus 190 ~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCCCSEEECCSCCB
T ss_pred hhcccccCCeEEeCCCCc
Confidence 345667888888887654
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=1.8e-19 Score=171.10 Aligned_cols=314 Identities=15% Similarity=0.100 Sum_probs=168.6
Q ss_pred CCCCcCEEEccCCCCCc-----cchhhhhcCCcccEEECCCCCCCCCcCcc-Cccc-cccc----cCCEEeccCCCCc--
Q 040318 4 RYSNIPSILELSSNNKV-----FEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGI-SSLV----SLQHLDVSYTDIR-- 70 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~-----l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~-~~l~----~L~~L~l~~~~i~-- 70 (366)
.+++|++|++++|.+.. ++.. +..+++|++|++++| .+++. +..+ ..++ +|++|++++|.++
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n----~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSN----ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTC----CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCC----cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 35677777777777763 2333 666777777777777 44432 2222 2233 5777777777766
Q ss_pred ---cCchhhhcCccCCEeeccccccCCCcC-----hhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCC
Q 040318 71 ---GLPHELTALLNLRYLNLERTYHLSRFP-----PELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLK 142 (366)
Q Consensus 71 ---~l~~~i~~l~~L~~L~L~~c~~~~~l~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 142 (366)
.++..+..+++|++|++++ +.+.... ..+....++|++|++.+|.+... ........+..++
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---------~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA---------SCEPLASVLRAKP 170 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---------GHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCCceeEEECCC-CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH---------HHHHHHHHHhhCC
Confidence 3456667777777777777 4443321 11122345677777777765211 1123455666778
Q ss_pred CcceEEEEeccccccc--ccccc-ccccccccEEEEeccCCCCcC----ccchhhhcccCceEecccccceeeccccCcc
Q 040318 143 LLNLISFSLYSSRGVR--NFLKF-PKLLRITQALSISDCEIPLLN----VSHLAYMEHLKDLVIDNSNLEELKTDCTGEV 215 (366)
Q Consensus 143 ~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~ 215 (366)
+|+.|+++++...+.. .+... ....++|++|++++|...... ...+..+++|++|+++++.+.+.+......
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~- 249 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP- 249 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH-
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH-
Confidence 8888888876654321 11110 001236888888887652111 114556788888888887766543211100
Q ss_pred ccccccCCCCCcEEeEecCCCCcc-----cc-cccCCCCccEEEEEccCCccccccccccc-------c----------c
Q 040318 216 QKVLQCGFRSLHLASIAFCSRVKD-----LT-WLAFAPNLKIIVIMHCDDLEEIISVEKLN-------Q----------L 272 (366)
Q Consensus 216 ~~~p~~~~~~L~~L~l~~~~~l~~-----l~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~-------~----------~ 272 (366)
. ....+++|++|++++| .+++ ++ .+..+++|++|++++|........ .... . +
T Consensus 250 ~--~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 250 G--LLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR-LLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp H--HTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH-HHHHHHTSTTCCCCEEECTTSCC
T ss_pred H--HhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH-HHHHHhccCCccceeeEcCCCCC
Confidence 0 0024667777777777 5554 22 233466677777766653221110 0000 0 0
Q ss_pred -----ccccccccccccccccccccccccccccCC-----C-cCCCCccEEeccCCCCCC-----CCCCCCCCCCcceeE
Q 040318 273 -----SDIMGELNFFAKLELLDLYHAENLKSIYQG-----A-LPLPQLKEIRVTQCPKLK-----TLPLNSSSTKLRNIV 336 (366)
Q Consensus 273 -----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~-~~~~~L~~L~l~~c~~l~-----~lp~~~~~~~~~~~~ 336 (366)
..+...+..+++|++|+++++ .+++.... . ...++|++|++++| +++ .+|..+... +.++.
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~-~~L~~ 402 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLAN-HSLRE 402 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHC-CCCCE
T ss_pred chHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhC-CCccE
Confidence 011123445577888888776 33322111 1 12568888888887 455 344433332 44445
Q ss_pred EEcc
Q 040318 337 ISGG 340 (366)
Q Consensus 337 ~~~~ 340 (366)
++..
T Consensus 403 L~l~ 406 (461)
T 1z7x_W 403 LDLS 406 (461)
T ss_dssp EECC
T ss_pred EECC
Confidence 5443
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.6e-19 Score=171.47 Aligned_cols=300 Identities=16% Similarity=0.079 Sum_probs=160.5
Q ss_pred CCCCcCEEEccCCCCCcc-chhhhhcCC----cccEEECCCCCCCCCcC-----ccCccccccccCCEEeccCCCCccC-
Q 040318 4 RYSNIPSILELSSNNKVF-EPSWFLSRA----SWTCLDNGPSRIKNSLT-----ELPSGISSLVSLQHLDVSYTDIRGL- 72 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~----~L~~L~l~~~~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~i~~l- 72 (366)
.+++|++|++++|.+.+. +..++..++ +|++|++++| .++ .++..+..+++|++|++++|.++..
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n----~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 129 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC----CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS----CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC----CCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence 356777777777776652 223344455 5777777777 444 2455566677777777777765421
Q ss_pred chhh-----hcCccCCEeeccccccCCCcC----hhhhcCCCCCcEEEccCCCCCCcc--cc----------------c-
Q 040318 73 PHEL-----TALLNLRYLNLERTYHLSRFP----PELICSFSKLEVLRMLESGADSTA--EQ----------------G- 124 (366)
Q Consensus 73 ~~~i-----~~l~~L~~L~L~~c~~~~~l~----~~~l~~l~~L~~L~l~~~~~~~~~--~~----------------~- 124 (366)
+..+ ...++|++|++++| .+.... ...+..+++|++|++++|.+.... .+ +
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 1111 11345666666663 333211 112445566666666665431100 00 0
Q ss_pred ccccc-chHHHHHhhcCCCCcceEEEEeccccccc--cccc-cccccccccEEEEeccCCCCcCc--c--chhhhcccCc
Q 040318 125 SVLSE-DAEPLMKELLCLKLLNLISFSLYSSRGVR--NFLK-FPKLLRITQALSISDCEIPLLNV--S--HLAYMEHLKD 196 (366)
Q Consensus 125 ~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~--~l~~~~~L~~ 196 (366)
..+.. .....+..+..+++|+.|+++++...+.. .+.. ....+++|++|++++|....... + .+..+++|++
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 00000 01123444556667777777665543321 1110 01124557777777775411100 1 4455778888
Q ss_pred eEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccc------ccccCCCCccEEEEEccCCccccccccccc
Q 040318 197 LVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDL------TWLAFAPNLKIIVIMHCDDLEEIISVEKLN 270 (366)
Q Consensus 197 L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l------~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~ 270 (366)
|+++++.+.+.+...... .+ ....++|++|++++| .++.. ..+..+++|++|++++|...+....
T Consensus 289 L~Ls~n~i~~~~~~~l~~--~l-~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~----- 359 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCE--TL-LEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR----- 359 (461)
T ss_dssp EECTTCCCHHHHHHHHHH--HH-TSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-----
T ss_pred EECCCCCCchHHHHHHHH--Hh-ccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-----
Confidence 888777765443321110 00 023468999999988 46542 1345678999999998854333221
Q ss_pred cccccccccc-ccccccccccccccccc----cccCCCcCCCCccEEeccCCCCCC
Q 040318 271 QLSDIMGELN-FFAKLELLDLYHAENLK----SIYQGALPLPQLKEIRVTQCPKLK 321 (366)
Q Consensus 271 ~~~~~~~~~~-~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~c~~l~ 321 (366)
.+...+. ..++|++|++++|.--. .+......+++|++|++++|+ ++
T Consensus 360 ---~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~ 411 (461)
T 1z7x_W 360 ---ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LG 411 (461)
T ss_dssp ---HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CC
T ss_pred ---HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CC
Confidence 0001121 26799999999984322 344444568999999999984 44
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=6.3e-18 Score=161.44 Aligned_cols=234 Identities=16% Similarity=0.114 Sum_probs=153.4
Q ss_pred CCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCCC
Q 040318 29 RASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKL 107 (366)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L 107 (366)
+++|++|++++| .++.++ ..+..+++|++|++++|.++..+. +..+++|++|++++ +.+..++. .++|
T Consensus 33 ~~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~~-----~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGN----PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELLV-----GPSI 101 (487)
T ss_dssp GGGCCEEECCSS----CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCS-SEEEEEEE-----CTTC
T ss_pred CCCccEEEeeCC----cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecC-CcCCCCCC-----CCCc
Confidence 348999999999 777775 568889999999999999886654 88999999999999 66666553 3899
Q ss_pred cEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCccc
Q 040318 108 EVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSH 187 (366)
Q Consensus 108 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 187 (366)
++|++++|.+.... ...+++|+.|+++++........ ....+++|+.|+++++...+.....
T Consensus 102 ~~L~L~~N~l~~~~----------------~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 102 ETLHAANNNISRVS----------------CSRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp CEEECCSSCCCCEE----------------ECCCSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CEEECcCCcCCCCC----------------ccccCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCcChHH
Confidence 99999999773321 12356788888877766554221 1123455777777776652222223
Q ss_pred hh-hhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc-cccCCCCccEEEEEccCCcccccc
Q 040318 188 LA-YMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT-WLAFAPNLKIIVIMHCDDLEEIIS 265 (366)
Q Consensus 188 l~-~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~L~~c~~~~~~~~ 265 (366)
+. .+++|+.|++++|.+..+... ..+++|+.|++++| .++.++ .+..+++|+.|++++|.... +..
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~~----------~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred HhhhCCcccEEecCCCcccccccc----------ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCcc-cch
Confidence 33 567777777777777655321 24677777777777 566643 45567777777777765432 221
Q ss_pred ccccccccccccccccccccccccccccccc-ccccCCCcCCCCccEEecc
Q 040318 266 VEKLNQLSDIMGELNFFAKLELLDLYHAENL-KSIYQGALPLPQLKEIRVT 315 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~ 315 (366)
.+..+++|+.|++++++-. ..++.....++.|+.+++.
T Consensus 232 ------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4556677777777765433 1222223345666666664
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=3.6e-18 Score=147.76 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=104.3
Q ss_pred cccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCC-CccCch-hhhcCccCCEeeccccccCCCcChhhhcCCCCC
Q 040318 31 SWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTD-IRGLPH-ELTALLNLRYLNLERTYHLSRFPPELICSFSKL 107 (366)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~-i~~l~~-~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L 107 (366)
+|++|++++| .++.++. .+..+++|++|++++|. ++.++. .+..+++|++|++++|+.+..++...+.++++|
T Consensus 32 ~l~~L~l~~n----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIET----HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESC----CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEeCC----cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 5555555555 4555543 34455555555555554 554443 345555555555555445555554335555555
Q ss_pred cEEEccCCCCCCccccccccccchHHHHHhhcCCCCcc---eEEEEec-ccccccccccccccccccc-EEEEeccCCCC
Q 040318 108 EVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLN---LISFSLY-SSRGVRNFLKFPKLLRITQ-ALSISDCEIPL 182 (366)
Q Consensus 108 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~ 182 (366)
++|++.+|.+... + .+..+++|+ .|+++++ ....++.- ....+++|+ .|+++++....
T Consensus 108 ~~L~l~~n~l~~l--------------p-~~~~l~~L~~L~~L~l~~N~~l~~i~~~--~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 108 KFLGIFNTGLKMF--------------P-DLTKVYSTDIFFILEITDNPYMTSIPVN--AFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp CEEEEEEECCCSC--------------C-CCTTCCBCCSEEEEEEESCTTCCEECTT--TTTTTBSSEEEEECCSCCCCE
T ss_pred CEEeCCCCCCccc--------------c-ccccccccccccEEECCCCcchhhcCcc--cccchhcceeEEEcCCCCCcc
Confidence 5555555544211 1 133344444 5555554 33333211 011233456 66665554421
Q ss_pred cCccchhhhcccCceEecccc-cceeeccccCccccccccCC-CCCcEEeEecCCCCcccccccCCCCccEEEEEccC
Q 040318 183 LNVSHLAYMEHLKDLVIDNSN-LEELKTDCTGEVQKVLQCGF-RSLHLASIAFCSRVKDLTWLAFAPNLKIIVIMHCD 258 (366)
Q Consensus 183 ~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~p~~~~-~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~L~~c~ 258 (366)
.....+.. ++|+.|++.++. ++.+....+ ..+ ++|+.|+++++ .++.++.. .+++|+.|++.++.
T Consensus 171 i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~--------~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 171 VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAF--------GGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTTTTT-CEEEEEECTTCTTCCEECTTTT--------TTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC-
T ss_pred cCHhhcCC-CCCCEEEcCCCCCcccCCHHHh--------hccccCCcEEECCCC-ccccCChh-HhccCceeeccCcc
Confidence 22212333 677788887773 776665444 356 77888888877 56666543 67788888877664
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=7.2e-18 Score=148.85 Aligned_cols=195 Identities=17% Similarity=0.218 Sum_probs=147.2
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchh-hhcCccC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHE-LTALLNL 82 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L 82 (366)
++++|+.|++.++.+..++. +..+++|++|++++| .+..++ .+..+++|++|++++|.++.++.. +..+++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n----~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN----KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS----CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCCCCcccccc--cccCCCCcEEECCCC----CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 46789999999999988765 789999999999999 777765 588899999999999999977654 6899999
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccc
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLK 162 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 162 (366)
++|++++ +.+..++...+.++++|++|++.+|.+... ....+..+++|+.|+++++.....+
T Consensus 112 ~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~---- 173 (272)
T 3rfs_A 112 KELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSL-------------PKGVFDKLTNLTELDLSYNQLQSLP---- 173 (272)
T ss_dssp CEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCCCCC----
T ss_pred CEEECCC-CcCCccCHHHhccCCCCCEEECCCCccCcc-------------CHHHhccCccCCEEECCCCCcCccC----
Confidence 9999999 778888876688999999999999977322 1233566777777777765443221
Q ss_pred cccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc
Q 040318 163 FPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW 242 (366)
Q Consensus 163 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~ 242 (366)
...+..+++|+.|++.+|.+..+....+ ..+++|+.|++++|+ +
T Consensus 174 ----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~l~~N~------~ 217 (272)
T 3rfs_A 174 ----------------------EGVFDKLTQLKDLRLYQNQLKSVPDGVF--------DRLTSLQYIWLHDNP------W 217 (272)
T ss_dssp ----------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSSC------B
T ss_pred ----------------------HHHhcCCccCCEEECCCCcCCccCHHHH--------hCCcCCCEEEccCCC------c
Confidence 1134567788888888877776654333 367888888888883 2
Q ss_pred ccCCCCccEEEEEccCC
Q 040318 243 LAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~~ 259 (366)
.+.+|+|+.|++..+..
T Consensus 218 ~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 218 DCTCPGIRYLSEWINKH 234 (272)
T ss_dssp CCCTTTTHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHhC
Confidence 24466666666655543
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=2.1e-18 Score=168.86 Aligned_cols=275 Identities=15% Similarity=0.074 Sum_probs=150.9
Q ss_pred CCCCcCEEEccCCCCCccc----hhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEecc--------------
Q 040318 4 RYSNIPSILELSSNNKVFE----PSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVS-------------- 65 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~----~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~-------------- 65 (366)
.+++|+.|+++++.+..+. ..++.++++|++|++++| .+..++..+..+++|++|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~----~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF----EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC----BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc----cHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 4678888888888776221 223567888888888887 555444444444444444443
Q ss_pred -------------CCCCccCchhhhcCccCCEeeccccccCCCcC-hhhhcCCCCCcEEEccCCCCCCccccccccccch
Q 040318 66 -------------YTDIRGLPHELTALLNLRYLNLERTYHLSRFP-PELICSFSKLEVLRMLESGADSTAEQGSVLSEDA 131 (366)
Q Consensus 66 -------------~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 131 (366)
++....+|..+..+++|++|++++|. +.... ..++..+++|++|++..+ + ..
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~------------~~ 331 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-I------------GD 331 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-G------------HH
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-c------------CH
Confidence 33333556667778888888888854 43321 123567788888877633 2 01
Q ss_pred HHHHHhhcCCCCcceEEEEe----------ccccccccccccccc-------------------------cccccEEEEe
Q 040318 132 EPLMKELLCLKLLNLISFSL----------YSSRGVRNFLKFPKL-------------------------LRITQALSIS 176 (366)
Q Consensus 132 ~~~~~~l~~l~~L~~L~l~~----------~~~~~~~~~~~~~~~-------------------------~~~L~~L~l~ 176 (366)
.........+++|+.|+++. +.......+...... +++|++|++.
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 12222234455566666652 211111111111122 3345555554
Q ss_pred cc---CCCCcCc----c--chhhhcccCceEecc--cccceeeccccCccccccccCCCCCcEEeEecCCCCcc--cc-c
Q 040318 177 DC---EIPLLNV----S--HLAYMEHLKDLVIDN--SNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKD--LT-W 242 (366)
Q Consensus 177 ~~---~~~~~~~----~--~l~~~~~L~~L~l~~--~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~--l~-~ 242 (366)
.+ ...+..+ . .+..+++|++|+++. +.+.+......+ ..+++|+.|++++| .+++ ++ .
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-------~~~~~L~~L~L~~n-~l~~~~~~~~ 483 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-------QYSPNVRWMLLGYV-GESDEGLMEF 483 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-------HSCTTCCEEEECSC-CSSHHHHHHH
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-------HhCccceEeeccCC-CCCHHHHHHH
Confidence 22 2211100 0 233455555555542 112221111111 35899999999999 5665 33 3
Q ss_pred ccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccccccccccCC--CcCCCCccEEeccC
Q 040318 243 LAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG--ALPLPQLKEIRVTQ 316 (366)
Q Consensus 243 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~ 316 (366)
+..+++|++|+|++|........ .....+++|++|++++|. ++..... ...+|.+....+..
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIA-----------AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHH-----------HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred HhcCcccCeeeccCCCCcHHHHH-----------HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 46889999999999983222111 133568999999999997 5443322 33567666555543
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=3.8e-17 Score=144.00 Aligned_cols=178 Identities=21% Similarity=0.240 Sum_probs=141.1
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccCch-hhhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGLPH-ELTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~ 83 (366)
++++.|++++|.+..++...|..+++|++|++++| .++.++.. +..+++|++|++++|.++.+|. .+..+++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN----KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS----CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC----ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 56999999999999988766999999999999999 78888765 4779999999999999998765 468899999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++...+..+++|++|++++|.+... ....+..+++|+.|+++++.....
T Consensus 113 ~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~------ 172 (270)
T 2o6q_A 113 ELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSL-------------PKGVFDKLTSLKELRLYNNQLKRV------ 172 (270)
T ss_dssp EEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCC------
T ss_pred EEECCC-CccCeeCHHHhCcCcCCCEEECCCCcCCcc-------------CHhHccCCcccceeEecCCcCcEe------
Confidence 999999 788888876688999999999999977322 123356677777777766543332
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCC
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCS 235 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~ 235 (366)
....+..+++|+.|++.+|.++.+....+ ..+++|+.|++++++
T Consensus 173 --------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 --------------------PEGAFDKLTELKTLKLDNNQLKRVPEGAF--------DSLEKLKMLQLQENP 216 (270)
T ss_dssp --------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSSC
T ss_pred --------------------ChhHhccCCCcCEEECCCCcCCcCCHHHh--------ccccCCCEEEecCCC
Confidence 11245567888888888888877665444 367889999998885
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=3.1e-17 Score=145.06 Aligned_cols=153 Identities=16% Similarity=0.229 Sum_probs=105.2
Q ss_pred EEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCch-hhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEc
Q 040318 34 CLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRM 112 (366)
Q Consensus 34 ~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l 112 (366)
..+..+. .+..+|..+. ++|++|++++|+++.++. .+.++++|++|++++ +.+..++...+.++++|++|++
T Consensus 11 ~~~c~~~----~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L 83 (276)
T 2z62_A 11 TYQCMEL----NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLIL 83 (276)
T ss_dssp EEECTTS----CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEecCC----CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCC-CcCCccCHHHccCCcCCCEEEC
Confidence 3455555 6777887654 689999999999997765 788999999999999 6888887655899999999999
Q ss_pred cCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcC-ccchhhh
Q 040318 113 LESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLN-VSHLAYM 191 (366)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~ 191 (366)
++|.+. ...+..+..+++|+.|+++++.....+... ...+++|++|+++++...... ...+..+
T Consensus 84 ~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 84 TGNPIQ-------------SLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp TTCCCC-------------EECTTTTTTCTTCCEEECTTSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred CCCccC-------------ccChhhhcCCccccEEECCCCCccccCchh--cccCCCCCEEECcCCccceecCchhhccC
Confidence 999772 222356778899999999877655443211 122344666666655542211 1245555
Q ss_pred cccCceEecccccceee
Q 040318 192 EHLKDLVIDNSNLEELK 208 (366)
Q Consensus 192 ~~L~~L~l~~~~l~~l~ 208 (366)
++|+.|++++|+++.+.
T Consensus 149 ~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTCCEEECCSSCCCEEC
T ss_pred CCCCEEECCCCCCCcCC
Confidence 56666666555555443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=9.4e-18 Score=145.15 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=141.9
Q ss_pred CcCccCccccccccCCEEeccCCCCccCch-hhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccC-CCCCCccc
Q 040318 45 SLTELPSGISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLE-SGADSTAE 122 (366)
Q Consensus 45 ~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~-~~~~~~~~ 122 (366)
.++.+|. +. .+|++|++++|+++.+|. .+..+++|++|++++|..++.++...+.++++|++|++.+ +.+..
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--- 95 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--- 95 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---
Confidence 4566776 43 478888888888887765 6778888888888883347777765578888888888887 66521
Q ss_pred cccccccchHHHHHhhcCCCCcceEEEEecccccccccccccccccccc---EEEEecc-CCCCcCccchhhhcccC-ce
Q 040318 123 QGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQ---ALSISDC-EIPLLNVSHLAYMEHLK-DL 197 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L 197 (366)
.....+..+++|+.|+++++....++.+.. +.+|+ .|+++++ .........+..+++|+ .|
T Consensus 96 ----------i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~----l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 96 ----------IDPDALKELPLLKFLGIFNTGLKMFPDLTK----VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp ----------ECTTSEECCTTCCEEEEEEECCCSCCCCTT----CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred ----------cCHHHhCCCCCCCEEeCCCCCCcccccccc----ccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence 123456678888888888887776665333 23355 8888887 44222222577788888 88
Q ss_pred EecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--cccCC-CCccEEEEEccCCccccccccccccccc
Q 040318 198 VIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--WLAFA-PNLKIIVIMHCDDLEEIISVEKLNQLSD 274 (366)
Q Consensus 198 ~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~l~~l-~~L~~L~L~~c~~~~~~~~~~~~~~~~~ 274 (366)
++++++++.++...+ .. ++|+.|++++|+.++.++ .+..+ ++|++|+++++.. +.+.
T Consensus 162 ~l~~n~l~~i~~~~~--------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~---------- 221 (239)
T 2xwt_C 162 KLYNNGFTSVQGYAF--------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALP---------- 221 (239)
T ss_dssp ECCSCCCCEECTTTT--------TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCC----------
T ss_pred EcCCCCCcccCHhhc--------CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCC----------
Confidence 888888877765433 12 678888888885577764 35567 8888888887654 3331
Q ss_pred ccccccccccccccccccccc
Q 040318 275 IMGELNFFAKLELLDLYHAEN 295 (366)
Q Consensus 275 ~~~~~~~~~~L~~L~l~~~~~ 295 (366)
...+++|+.|.++++..
T Consensus 222 ----~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 222 ----SKGLEHLKELIARNTWT 238 (239)
T ss_dssp ----CTTCTTCSEEECTTC--
T ss_pred ----hhHhccCceeeccCccC
Confidence 12678888888877653
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=2.5e-18 Score=159.60 Aligned_cols=245 Identities=14% Similarity=0.130 Sum_probs=135.6
Q ss_pred cchhhhhcCCcccEEECCCCCCCCCcCc-----cCccccccccCCEEeccCCCCc----cCchhh-------hcCccCCE
Q 040318 21 FEPSWFLSRASWTCLDNGPSRIKNSLTE-----LPSGISSLVSLQHLDVSYTDIR----GLPHEL-------TALLNLRY 84 (366)
Q Consensus 21 l~~~~~~~~~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~----~l~~~i-------~~l~~L~~ 84 (366)
++.. +..+++|++|++++| .++. ++..+..+++|++|++++|.+. .+|..+ ..+++|++
T Consensus 24 l~~~-l~~~~~L~~L~L~~n----~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 24 VFAV-LLEDDSVKEIVLSGN----TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp TSHH-HHHCSCCCEEECTTS----EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHH-HhcCCCccEEECCCC----CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 4444 566777777777777 4443 2233556777777777776443 233333 56677777
Q ss_pred eeccccccCCC-----cChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCC---------CCcceEEEE
Q 040318 85 LNLERTYHLSR-----FPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCL---------KLLNLISFS 150 (366)
Q Consensus 85 L~L~~c~~~~~-----l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~l~ 150 (366)
|++++ +.+.. ++.. +..+++|++|++++|.+... ........+..+ ++|+.|+++
T Consensus 99 L~Ls~-n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~---------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 99 VRLSD-NAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQ---------AGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp EECCS-CCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHH---------HHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred EECCC-CcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHH---------HHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 77777 45544 3433 66677777777777765100 001122223333 677777777
Q ss_pred ecccc--ccccccccccccccccEEEEeccCCCCcC----cc-chhhhcccCceEecccccceeeccccCccccccccCC
Q 040318 151 LYSSR--GVRNFLKFPKLLRITQALSISDCEIPLLN----VS-HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGF 223 (366)
Q Consensus 151 ~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~ 223 (366)
++... ..+.+......+++|++|++++|...... .. .+..+++|+.|++++|.+.+.+..... .. ...+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~--~~--l~~~ 243 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA--IA--LKSW 243 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH--HH--GGGC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH--HH--HccC
Confidence 66654 23332232333456777777777551100 11 455677788888877776432211110 00 0356
Q ss_pred CCCcEEeEecCCCCccc------ccc--cCCCCccEEEEEccCCcccccccccccccccccccc-ccccccccccccccc
Q 040318 224 RSLHLASIAFCSRVKDL------TWL--AFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGEL-NFFAKLELLDLYHAE 294 (366)
Q Consensus 224 ~~L~~L~l~~~~~l~~l------~~l--~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 294 (366)
++|+.|++++| .+++. ..+ +.+++|++|+|++|........ .+...+ ..+++|++|+++++.
T Consensus 244 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~--------~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 244 PNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--------TLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--------HHHHHHHHHCTTCCEEECTTSB
T ss_pred CCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH--------HHHHHHHhcCCCceEEEccCCc
Confidence 77888888887 45543 123 3377888888887765442110 011133 346788888887764
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=147.67 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=87.4
Q ss_pred CCcCEEEccCCCCCc--cchh-hhhcCCcccEEECCCCCCCCCcCc-cCccc--cccccCCEEeccCCCCccC-c----h
Q 040318 6 SNIPSILELSSNNKV--FEPS-WFLSRASWTCLDNGPSRIKNSLTE-LPSGI--SSLVSLQHLDVSYTDIRGL-P----H 74 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~--l~~~-~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~--~~l~~L~~L~l~~~~i~~l-~----~ 74 (366)
..++.+.+.+..+.. +... .+..+++|++|++++| .+.. .|..+ ..+++|++|++++|.++.. + .
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL----KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC----CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC----EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 346677777666543 1110 0223466888888888 5553 45555 7788888889988877732 2 2
Q ss_pred hhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHH--HhhcCCCCcceEEEEec
Q 040318 75 ELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLM--KELLCLKLLNLISFSLY 152 (366)
Q Consensus 75 ~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~ 152 (366)
.+..+++|++|++++ +.+..++...+..+++|++|++++|.+.. ..... ..+..+++|++|+++++
T Consensus 140 ~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLDLSDNPGLG-----------ERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp HTTBCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEECCSCTTCH-----------HHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred HhhhccCCCEEEeeC-CCcchhhHHHhccCCCCCEEECCCCCCcc-----------chhhhHHHhhhcCCCCCEEECCCC
Confidence 345688888888888 66777665557788888999988886511 01111 12356777888877776
Q ss_pred ccccc
Q 040318 153 SSRGV 157 (366)
Q Consensus 153 ~~~~~ 157 (366)
.....
T Consensus 208 ~l~~l 212 (310)
T 4glp_A 208 GMETP 212 (310)
T ss_dssp CCCCH
T ss_pred CCCch
Confidence 65443
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=4.4e-18 Score=154.73 Aligned_cols=202 Identities=17% Similarity=0.112 Sum_probs=146.8
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCc--cCccccccccCCEEeccCCCCc-cCchhhhcCccC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTE--LPSGISSLVSLQHLDVSYTDIR-GLPHELTALLNL 82 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~--l~~~~~~l~~L~~L~l~~~~i~-~l~~~i~~l~~L 82 (366)
++++.|++.++.+...+.. +..+++|++|++++| .++. ++..+..+++|++|++++|.++ ..+..+..+++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~----~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS----VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC----EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCC----CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 7899999999998876666 567999999999999 5553 6777888999999999999887 567788899999
Q ss_pred CEeeccccccCCC--cChhhhcCCCCCcEEEccCC-CCCCccccccccccchHHHHHhhcCCC-CcceEEEEeccc-ccc
Q 040318 83 RYLNLERTYHLSR--FPPELICSFSKLEVLRMLES-GADSTAEQGSVLSEDAEPLMKELLCLK-LLNLISFSLYSS-RGV 157 (366)
Q Consensus 83 ~~L~L~~c~~~~~--l~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~-~~~ 157 (366)
++|++++|..++. ++.. +.++++|++|++.+| .+ ........+..++ +|+.|+++++.. ...
T Consensus 145 ~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l------------~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDF------------TEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp SEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTC------------CHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred CEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCc------------ChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 9999999756764 5543 788999999999999 66 1223566677788 888888876531 110
Q ss_pred ccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccc-cceeeccccCccccccccCCCCCcEEeEecCCC
Q 040318 158 RNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSN-LEELKTDCTGEVQKVLQCGFRSLHLASIAFCSR 236 (366)
Q Consensus 158 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~ 236 (366)
..+.. .+..+++|+.|++.++. +++.....+ ..+++|+.|++++|..
T Consensus 212 ~~l~~------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l--------~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 212 SDLST------------------------LVRRCPNLVHLDLSDSVMLKNDCFQEF--------FQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHHH------------------------HHHHCTTCSEEECTTCTTCCGGGGGGG--------GGCTTCCEEECTTCTT
T ss_pred HHHHH------------------------HHhhCCCCCEEeCCCCCcCCHHHHHHH--------hCCCCCCEeeCCCCCC
Confidence 11111 33456667777776655 433222222 3568888888888864
Q ss_pred Ccc--cccccCCCCccEEEEEcc
Q 040318 237 VKD--LTWLAFAPNLKIIVIMHC 257 (366)
Q Consensus 237 l~~--l~~l~~l~~L~~L~L~~c 257 (366)
++. +..++.+++|++|++++|
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 443 334667888888888888
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.3e-16 Score=142.04 Aligned_cols=184 Identities=16% Similarity=0.216 Sum_probs=125.1
Q ss_pred ccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeecccccc
Q 040318 13 ELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYH 92 (366)
Q Consensus 13 l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~ 92 (366)
+..+.+.++.. +..+++|++|++++| .++.++. +..+++|++|++++|.++.++. +..+++|++|++++ +.
T Consensus 31 l~~~~~~~~~~--~~~l~~L~~L~l~~~----~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~ 101 (291)
T 1h6t_A 31 LKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NK 101 (291)
T ss_dssp TTCSCTTSEEC--HHHHHTCCEEECTTS----CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SC
T ss_pred hcCCCcccccc--hhhcCcccEEEccCC----CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-Cc
Confidence 34444544433 456777888888887 6666654 6677888888888887777665 77778888888877 56
Q ss_pred CCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccE
Q 040318 93 LSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQA 172 (366)
Q Consensus 93 ~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 172 (366)
+..++. +..+++|++|++++|.+.. ...+..+++|+.|+++++.....
T Consensus 102 l~~~~~--l~~l~~L~~L~L~~n~i~~---------------~~~l~~l~~L~~L~l~~n~l~~~--------------- 149 (291)
T 1h6t_A 102 VKDLSS--LKDLKKLKSLSLEHNGISD---------------INGLVHLPQLESLYLGNNKITDI--------------- 149 (291)
T ss_dssp CCCGGG--GTTCTTCCEEECTTSCCCC---------------CGGGGGCTTCCEEECCSSCCCCC---------------
T ss_pred CCCChh--hccCCCCCEEECCCCcCCC---------------ChhhcCCCCCCEEEccCCcCCcc---------------
Confidence 666655 7778888888888776521 12345556666666654433222
Q ss_pred EEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccCCCCccEE
Q 040318 173 LSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAFAPNLKII 252 (366)
Q Consensus 173 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L 252 (366)
..+..+++|+.|++++|.+..+.. + ..+++|+.|++++| .+++++.+..+++|+.|
T Consensus 150 -------------~~l~~l~~L~~L~L~~N~l~~~~~--l--------~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L 205 (291)
T 1h6t_A 150 -------------TVLSRLTKLDTLSLEDNQISDIVP--L--------AGLTKLQNLYLSKN-HISDLRALAGLKNLDVL 205 (291)
T ss_dssp -------------GGGGGCTTCSEEECCSSCCCCCGG--G--------TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEE
T ss_pred -------------hhhccCCCCCEEEccCCccccchh--h--------cCCCccCEEECCCC-cCCCChhhccCCCCCEE
Confidence 144566777888887777765543 1 46788888888888 68888778888888888
Q ss_pred EEEccCCcc
Q 040318 253 VIMHCDDLE 261 (366)
Q Consensus 253 ~L~~c~~~~ 261 (366)
++++|....
T Consensus 206 ~l~~n~i~~ 214 (291)
T 1h6t_A 206 ELFSQECLN 214 (291)
T ss_dssp EEEEEEEEC
T ss_pred ECcCCcccC
Confidence 888876444
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=8.9e-17 Score=143.12 Aligned_cols=177 Identities=18% Similarity=0.149 Sum_probs=141.8
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCE
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRY 84 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~ 84 (366)
.++++.|++++|.+..++...+..+++|++|++++| .++.++.. ..+++|++|++++|.++.+|..+..+++|++
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS----CCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC----ccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCE
Confidence 368999999999999987777999999999999999 78887664 7899999999999999999998999999999
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP 164 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 164 (366)
|++++ +.+..++.+.+.++++|++|++.+|.+... ....+..+++|+.|+++++....+
T Consensus 105 L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~l------- 163 (290)
T 1p9a_G 105 LDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL-------------PPGLLTPTPKLEKLSLANNNLTEL------- 163 (290)
T ss_dssp EECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC-------------CTTTTTTCTTCCEEECTTSCCSCC-------
T ss_pred EECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCcc-------------ChhhcccccCCCEEECCCCcCCcc-------
Confidence 99999 888888866689999999999999987322 123355667777777765543322
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCC
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCS 235 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~ 235 (366)
....+..+++|+.|++++|.++.++...+ ..++|+.|++.+++
T Consensus 164 -------------------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~---------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 -------------------PAGLLNGLENLDTLLLQENSLYTIPKGFF---------GSHLLPFAFLHGNP 206 (290)
T ss_dssp -------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCCCSEEECCSCC
T ss_pred -------------------CHHHhcCcCCCCEEECCCCcCCccChhhc---------ccccCCeEEeCCCC
Confidence 22244567888899998888887665333 45689999998885
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=3.7e-18 Score=158.42 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=159.4
Q ss_pred CCCCcCEEEccCCCCCccchh----hhhcCCcccEEECCCCCCCCCcC-ccCccc-------cccccCCEEeccCCCCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPS----WFLSRASWTCLDNGPSRIKNSLT-ELPSGI-------SSLVSLQHLDVSYTDIRG 71 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~-------~~l~~L~~L~l~~~~i~~ 71 (366)
.+++|+.|++++|.+...... .+..+++|++|++++|.+. .+. .+|..+ ..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-SCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC-ccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 467899999998887753222 2567889999999987211 111 234333 578899999999998875
Q ss_pred -----CchhhhcCccCCEeeccccccCCCcChhh----hcCC---------CCCcEEEccCCCCCCccccccccccchHH
Q 040318 72 -----LPHELTALLNLRYLNLERTYHLSRFPPEL----ICSF---------SKLEVLRMLESGADSTAEQGSVLSEDAEP 133 (366)
Q Consensus 72 -----l~~~i~~l~~L~~L~L~~c~~~~~l~~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 133 (366)
+|..+..+++|++|++++ +.+....... +..+ ++|++|++++|.+... ....
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~---------~~~~ 178 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHN-NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---------SMKE 178 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---------GHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcC-CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---------HHHH
Confidence 677788889999999988 4554322111 3334 8899999999876211 1122
Q ss_pred HHHhhcCCCCcceEEEEecccccc--ccccc-cccccccccEEEEeccCCCCc--Ccc--chhhhcccCceEecccccce
Q 040318 134 LMKELLCLKLLNLISFSLYSSRGV--RNFLK-FPKLLRITQALSISDCEIPLL--NVS--HLAYMEHLKDLVIDNSNLEE 206 (366)
Q Consensus 134 ~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~--~l~~~~~L~~L~l~~~~l~~ 206 (366)
....+..+++|+.|+++++..... ..+.. ....+++|+.|+++++..... ..+ .+..+++|+.|++++|.+..
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 235677788999999988776521 12222 333456789999988875110 111 56778889999998888766
Q ss_pred eeccccCccccccccCCCCCcEEeEecCCCCcc-----cc-cc-cCCCCccEEEEEccCCccc
Q 040318 207 LKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKD-----LT-WL-AFAPNLKIIVIMHCDDLEE 262 (366)
Q Consensus 207 l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~-----l~-~l-~~l~~L~~L~L~~c~~~~~ 262 (366)
.+..... ..+....+++|+.|++++| .++. ++ .+ .++++|++|++++|.....
T Consensus 259 ~~~~~l~--~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 259 RGAAAVV--DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHH--HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hhHHHHH--HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 5332110 0011124788999999998 5665 44 23 4579999999988875543
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.4e-16 Score=141.93 Aligned_cols=169 Identities=21% Similarity=0.207 Sum_probs=125.6
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
++++|+.|+++++.+..++. +..+++|++|++++| .++.++. +..+++|++|++++|.++.++. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n----~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN----KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC----ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 46789999999999998865 789999999999999 7888877 8899999999999999988764 89999999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|++++ +.+..++. +..+++|++|++++|.+.. ...+..+++|+.|+++++.....+.+
T Consensus 116 ~L~L~~-n~i~~~~~--l~~l~~L~~L~l~~n~l~~---------------~~~l~~l~~L~~L~L~~N~l~~~~~l--- 174 (291)
T 1h6t_A 116 SLSLEH-NGISDING--LVHLPQLESLYLGNNKITD---------------ITVLSRLTKLDTLSLEDNQISDIVPL--- 174 (291)
T ss_dssp EEECTT-SCCCCCGG--GGGCTTCCEEECCSSCCCC---------------CGGGGGCTTCSEEECCSSCCCCCGGG---
T ss_pred EEECCC-CcCCCChh--hcCCCCCCEEEccCCcCCc---------------chhhccCCCCCEEEccCCccccchhh---
Confidence 999999 77888764 8999999999999997721 14577788888888887766554331
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEeccccc
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNL 204 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 204 (366)
..+++|+.|+++++.. .....+..+++|+.|++.+|.+
T Consensus 175 -~~l~~L~~L~L~~N~i--~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 175 -AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -TTCTTCCEEECCSSCC--CBCGGGTTCTTCSEEEEEEEEE
T ss_pred -cCCCccCEEECCCCcC--CCChhhccCCCCCEEECcCCcc
Confidence 1223355555544443 1111333444444444444433
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=5.3e-18 Score=166.06 Aligned_cols=276 Identities=12% Similarity=0.086 Sum_probs=159.3
Q ss_pred CCCCcCEEEccCCCCCccchh----hhhcCCcccEEECCCCCCCCC--cC--ccCccccccccCCEEeccCC-CCccCch
Q 040318 4 RYSNIPSILELSSNNKVFEPS----WFLSRASWTCLDNGPSRIKNS--LT--ELPSGISSLVSLQHLDVSYT-DIRGLPH 74 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~--~~--~l~~~~~~l~~L~~L~l~~~-~i~~l~~ 74 (366)
.|++|++|++++|.+.+.... ....+++|++|++++| . ++ .++..+..+++|++|++++| .+..++.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~ 229 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL----ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT 229 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC----CSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc----CCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH
Confidence 588999999998876543222 2346779999999988 4 11 12222345789999999988 5556777
Q ss_pred hhhcCccCCEeeccccc-------------------cCC-----------CcChhhhcCCCCCcEEEccCCCCCCccccc
Q 040318 75 ELTALLNLRYLNLERTY-------------------HLS-----------RFPPELICSFSKLEVLRMLESGADSTAEQG 124 (366)
Q Consensus 75 ~i~~l~~L~~L~L~~c~-------------------~~~-----------~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 124 (366)
.+..+++|++|+++.|. .+. .++. .+..+++|++|++.+|.+
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l------- 301 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATV------- 301 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCC-------
T ss_pred HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCC-------
Confidence 77788888888755431 111 1222 133567888888888864
Q ss_pred cccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEecc--------CCCCcCcc---ch-hhhc
Q 040318 125 SVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDC--------EIPLLNVS---HL-AYME 192 (366)
Q Consensus 125 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~---~l-~~~~ 192 (366)
........+..+++|+.|.+.++ .. ...+......+++|++|++.+| .. .... .+ ..++
T Consensus 302 -----~~~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~--l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 302 -----QSYDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVA--LTEQGLVSVSMGCP 372 (594)
T ss_dssp -----CHHHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC--CCHHHHHHHHHHCT
T ss_pred -----CHHHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCC--CCHHHHHHHHHhch
Confidence 12233444667788888888865 21 1122222233566778877543 22 1111 22 2366
Q ss_pred ccCceEecccccceeeccccCccccccccCCCCCcEEeEe-----cCCCCc----------------------------c
Q 040318 193 HLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIA-----FCSRVK----------------------------D 239 (366)
Q Consensus 193 ~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~-----~~~~l~----------------------------~ 239 (366)
+|+.|.+.++.+...+..... ..+++|+.|++. +|..++ +
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~-------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~ 445 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIA-------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTD 445 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHH-------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hHHHHHHhcCCcCHHHHHHHH-------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccH
Confidence 777776655554432221110 134555555555 233333 2
Q ss_pred --cccccC-CCCccEEEEEccCCccccccccccccccccccccccccccccccccccccccccc--CCCcCCCCccEEec
Q 040318 240 --LTWLAF-APNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIY--QGALPLPQLKEIRV 314 (366)
Q Consensus 240 --l~~l~~-l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l 314 (366)
+..++. +++|+.|+|++|......+. ....++++|++|++++|.. +... .....+++|+.|++
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWM 513 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEE
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEee
Confidence 111222 56666666666653222211 1225689999999998875 3222 12345889999999
Q ss_pred cCCCC
Q 040318 315 TQCPK 319 (366)
Q Consensus 315 ~~c~~ 319 (366)
++|+.
T Consensus 514 ~~~~~ 518 (594)
T 2p1m_B 514 SSCSV 518 (594)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 99975
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=6.1e-17 Score=148.86 Aligned_cols=259 Identities=12% Similarity=0.044 Sum_probs=150.0
Q ss_pred EEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-----ccccccc-cCCEEeccCCCCccC-chhhhcC---
Q 040318 10 SILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-----SGISSLV-SLQHLDVSYTDIRGL-PHELTAL--- 79 (366)
Q Consensus 10 ~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-----~~~~~l~-~L~~L~l~~~~i~~l-~~~i~~l--- 79 (366)
++.++.+++....+.++...++|++|++++| .++..+ ..+..++ +|++|++++|.++.. +..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN----NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS----CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC----CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 3566777777655554555556888888888 666654 3455666 788888888877643 3444443
Q ss_pred --ccCCEeeccccccCCCcChh----hhcCC-CCCcEEEccCCCCCCccccccccccchHHHHHhhcCC-CCcceEEEEe
Q 040318 80 --LNLRYLNLERTYHLSRFPPE----LICSF-SKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCL-KLLNLISFSL 151 (366)
Q Consensus 80 --~~L~~L~L~~c~~~~~l~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~ 151 (366)
++|++|++++ +.++..+.. .+..+ ++|++|++++|.+... ........+..+ ++|++|++++
T Consensus 78 ~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---------~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 78 IPANVTSLNLSG-NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK---------SSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp SCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS---------CHHHHHHHHTTSCTTCCEEECTT
T ss_pred cCCCccEEECcC-CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH---------HHHHHHHHHHhCCCceeEEEccC
Confidence 7788888887 455544432 13344 7788888888766221 112233345553 5788888877
Q ss_pred ccccccc--ccccccccc-ccccEEEEeccCCCCcCcc----chhhh-cccCceEecccccceeeccccCccccccccCC
Q 040318 152 YSSRGVR--NFLKFPKLL-RITQALSISDCEIPLLNVS----HLAYM-EHLKDLVIDNSNLEELKTDCTGEVQKVLQCGF 223 (366)
Q Consensus 152 ~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~ 223 (366)
+...+.. .+....... .+|++|+++++........ .+..+ ++|++|++++|.+.+.+..... ..+ ....
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~--~~l-~~~~ 224 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA--YIF-SSIP 224 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH--HHH-HHSC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH--HHH-hcCC
Confidence 6654321 111111111 2578888877765222221 23334 4888888888877764332110 000 0124
Q ss_pred CCCcEEeEecCCCCcccc------cccCCCCccEEEEEccCC---ccccccccccccccccccccccccccccccccccc
Q 040318 224 RSLHLASIAFCSRVKDLT------WLAFAPNLKIIVIMHCDD---LEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAE 294 (366)
Q Consensus 224 ~~L~~L~l~~~~~l~~l~------~l~~l~~L~~L~L~~c~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 294 (366)
++|+.|++++| .+++.. .+..+++|+.|++++|.. ..... ..+...+..+++|+.|++++..
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~--------~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC--------KALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH--------HHHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH--------HHHHHHhccCCceEEEecCCCc
Confidence 58888888888 565532 235678888888888761 11111 1222355677788888887653
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=2.6e-17 Score=161.09 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=21.0
Q ss_pred ccccccccccccccccccccccCC--CcCCCCccEEeccCCC
Q 040318 279 LNFFAKLELLDLYHAENLKSIYQG--ALPLPQLKEIRVTQCP 318 (366)
Q Consensus 279 ~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~ 318 (366)
+..+++|++|++++ .++..... ...+++|+.|++++|.
T Consensus 428 ~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence 34566777777755 22221111 1126788888887764
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=2.1e-16 Score=144.58 Aligned_cols=223 Identities=14% Similarity=0.090 Sum_probs=100.3
Q ss_pred EEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCc-cCch-hhhcCccCCEee
Q 040318 10 SILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIR-GLPH-ELTALLNLRYLN 86 (366)
Q Consensus 10 ~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~-~l~~-~i~~l~~L~~L~ 86 (366)
.++-++++++++|..+ .+++++|++++| .++.+|. .+.++++|++|++++|.+. .+|. .+.++++++++.
T Consensus 13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL---PRNAIELRFVLT----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp EEEEESTTCCSCCTTC---CTTCSEEEEESC----CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred EEEecCCCCCccCcCc---CCCCCEEEccCC----cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 3444444555555431 234555555555 4455543 2444555555555555443 2332 234444544433
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCcccccccc------------ccchHHHHHhhcCC-CCcceEEEEecc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVL------------SEDAEPLMKELLCL-KLLNLISFSLYS 153 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~l-~~L~~L~l~~~~ 153 (366)
...++.+..++.+.+..+++|++|++.+|.+...+...... .....-....+..+ ..++.|.++++.
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 33334455554433455555555555555442221000000 00000001112222 345555555554
Q ss_pred ccccccccccccccccccEEEEeccCCCCcCcc---chhhhcccCceEecccccceeeccccCccccccccCCCCCcEEe
Q 040318 154 SRGVRNFLKFPKLLRITQALSISDCEIPLLNVS---HLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLAS 230 (366)
Q Consensus 154 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~ 230 (366)
...++.... ...+++.+.+.+++. ...+ .+..+++|+.|++++|+++.++. ..+.+|++|.
T Consensus 166 i~~i~~~~f---~~~~L~~l~l~~~n~--l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----------~~~~~L~~L~ 229 (350)
T 4ay9_X 166 IQEIHNSAF---NGTQLDELNLSDNNN--LEELPNDVFHGASGPVILDISRTRIHSLPS-----------YGLENLKKLR 229 (350)
T ss_dssp CCEECTTSS---TTEEEEEEECTTCTT--CCCCCTTTTTTEECCSEEECTTSCCCCCCS-----------SSCTTCCEEE
T ss_pred ccCCChhhc---cccchhHHhhccCCc--ccCCCHHHhccCcccchhhcCCCCcCccCh-----------hhhccchHhh
Confidence 444332111 112355555554443 2222 44556666666666666554433 3455666666
Q ss_pred EecCCCCcccccccCCCCccEEEEE
Q 040318 231 IAFCSRVKDLTWLAFAPNLKIIVIM 255 (366)
Q Consensus 231 l~~~~~l~~l~~l~~l~~L~~L~L~ 255 (366)
+.++..++.+|.+..+++|+.+++.
T Consensus 230 ~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 230 ARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred hccCCCcCcCCCchhCcChhhCcCC
Confidence 6565556666655566666666654
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.3e-16 Score=155.76 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=112.1
Q ss_pred EEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeecccc
Q 040318 11 ILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERT 90 (366)
Q Consensus 11 L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c 90 (366)
+.+..+.+.++.. +..+++|+.|++++| .+..++. +..+++|+.|+|++|.+..++. +..+++|+.|+|++
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n----~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~- 96 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE- 96 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTC----CCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS-
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCC----CCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC-
Confidence 3444555555444 456777888888877 6666664 6777888888888887777665 77778888888877
Q ss_pred ccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccc
Q 040318 91 YHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRIT 170 (366)
Q Consensus 91 ~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 170 (366)
+.+..++. +..+++|++|++++|.+.. +..+..+++|+.|+++.+.....+
T Consensus 97 N~l~~l~~--l~~l~~L~~L~Ls~N~l~~---------------l~~l~~l~~L~~L~Ls~N~l~~l~------------ 147 (605)
T 1m9s_A 97 NKIKDLSS--LKDLKKLKSLSLEHNGISD---------------INGLVHLPQLESLYLGNNKITDIT------------ 147 (605)
T ss_dssp SCCCCCTT--STTCTTCCEEECTTSCCCC---------------CGGGGGCTTCSEEECCSSCCCCCG------------
T ss_pred CCCCCChh--hccCCCCCEEEecCCCCCC---------------CccccCCCccCEEECCCCccCCch------------
Confidence 56666664 7778888888888776621 133556666666666655444331
Q ss_pred cEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccccccCCCCcc
Q 040318 171 QALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTWLAFAPNLK 250 (366)
Q Consensus 171 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~ 250 (366)
.+..+++|+.|++++|.+..+.. + ..+++|+.|+|++| .+++++.+..+++|+
T Consensus 148 ----------------~l~~l~~L~~L~Ls~N~l~~~~~--l--------~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~ 200 (605)
T 1m9s_A 148 ----------------VLSRLTKLDTLSLEDNQISDIVP--L--------AGLTKLQNLYLSKN-HISDLRALAGLKNLD 200 (605)
T ss_dssp ----------------GGGSCTTCSEEECCSSCCCCCGG--G--------TTCTTCCEEECCSS-CCCBCGGGTTCTTCS
T ss_pred ----------------hhcccCCCCEEECcCCcCCCchh--h--------ccCCCCCEEECcCC-CCCCChHHccCCCCC
Confidence 23334455555555544443321 1 24555555555555 455555555555555
Q ss_pred EEEEEccCC
Q 040318 251 IIVIMHCDD 259 (366)
Q Consensus 251 ~L~L~~c~~ 259 (366)
.|+|++|..
T Consensus 201 ~L~L~~N~l 209 (605)
T 1m9s_A 201 VLELFSQEC 209 (605)
T ss_dssp EEECCSEEE
T ss_pred EEEccCCcC
Confidence 555555543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=3.1e-16 Score=143.52 Aligned_cols=236 Identities=15% Similarity=0.105 Sum_probs=173.3
Q ss_pred cEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCch-hhhcCccCCEeeccccccCCCcChhhhcCCCCCcEE-
Q 040318 33 TCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVL- 110 (366)
Q Consensus 33 ~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L- 110 (366)
++++.+++ .++++|..+. +++++|++++|+++.+|. .+.++++|++|+|++|...+.++.+++.+++++.++
T Consensus 12 ~~v~C~~~----~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQES----KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEEST----TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCC----CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 56777777 8899998763 689999999999999986 579999999999999444466777668899988764
Q ss_pred EccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCcCcc---c
Q 040318 111 RMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVS---H 187 (366)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~ 187 (366)
.+..+.+. .-.+..+..+++|+.|+++++.....+...... ..++..+.+.++.. .... .
T Consensus 86 ~~~~N~l~-------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~l~~l~l~~~~~--i~~l~~~~ 148 (350)
T 4ay9_X 86 IEKANNLL-------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH--SLQKVLLDIQDNIN--IHTIERNS 148 (350)
T ss_dssp EEEETTCC-------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC--BSSCEEEEEESCTT--CCEECTTS
T ss_pred cccCCccc-------------ccCchhhhhccccccccccccccccCCchhhcc--cchhhhhhhccccc--cccccccc
Confidence 44456552 122456788999999999999887765543322 23467788877665 3332 4
Q ss_pred hhhh-cccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc--ccCCCCccEEEEEccCCccccc
Q 040318 188 LAYM-EHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW--LAFAPNLKIIVIMHCDDLEEII 264 (366)
Q Consensus 188 l~~~-~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~L~~L~L~~c~~~~~~~ 264 (366)
+..+ ..++.|++++|+++.+....+ ...+|+.|.+.++..++.++. +..+++|++|++++|. ++.+.
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f---------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp 218 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAF---------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP 218 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSS---------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCC
T ss_pred hhhcchhhhhhccccccccCCChhhc---------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccC
Confidence 4444 468889999999998876444 346789999987768888874 6789999999999885 44332
Q ss_pred ccccccccccccccccccccccccccccccccccccCCCcCCCCccEEeccC
Q 040318 265 SVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEIRVTQ 316 (366)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 316 (366)
...+.+|+.|.+.++..++.++ ....+++|+.+++.+
T Consensus 219 --------------~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 219 --------------SYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp --------------SSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred --------------hhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 1346667777776777777776 356788999999864
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=7.7e-16 Score=150.22 Aligned_cols=174 Identities=21% Similarity=0.186 Sum_probs=144.1
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.+++|+.|+++++.+..++. +..+++|+.|++++| .+..++. +..+++|++|+|++|.+..+| .+..+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N----~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN----KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS----CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC----CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 46889999999999998875 889999999999999 7788876 889999999999999998876 688999999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
+|+|++ +.+..++. +..+++|+.|++++|.+. ....+..+++|+.|+++.+.......+
T Consensus 113 ~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~---------------~l~~l~~l~~L~~L~Ls~N~l~~~~~l--- 171 (605)
T 1m9s_A 113 SLSLEH-NGISDING--LVHLPQLESLYLGNNKIT---------------DITVLSRLTKLDTLSLEDNQISDIVPL--- 171 (605)
T ss_dssp EEECTT-SCCCCCGG--GGGCTTCSEEECCSSCCC---------------CCGGGGSCTTCSEEECCSSCCCCCGGG---
T ss_pred EEEecC-CCCCCCcc--ccCCCccCEEECCCCccC---------------CchhhcccCCCCEEECcCCcCCCchhh---
Confidence 999999 67888765 899999999999999772 125678899999999998887766542
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeec
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKT 209 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~ 209 (366)
..+++|+.|+++++.. .....+..+++|+.|++.+|.+...+.
T Consensus 172 -~~l~~L~~L~Ls~N~i--~~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 172 -AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -TTCTTCCEEECCSSCC--CBCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred -ccCCCCCEEECcCCCC--CCChHHccCCCCCEEEccCCcCcCCcc
Confidence 3356699999998876 222367788899999998877765443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=2.4e-15 Score=130.97 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccCCE
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRY 84 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~ 84 (366)
..+.++++++++..+|..+ .+.++.|++++| .+..++. .+..+++|++|++++|.++.++. .+..+++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI---PADTEKLDLQST----GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC---CTTCCEEECTTS----CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCeEEecCCCCccccCCCC---CCCCCEEEccCC----CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 4567777777777777652 257777777777 5566543 46677777777777777775543 4677777777
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
|++++ +.+..++...+..+++|++|++++|.+
T Consensus 88 L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 88 LGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp EECTT-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCC-CcccccChhHhcccCCCCEEEcCCCcC
Confidence 77777 666676655567777777777777755
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=2.7e-16 Score=144.55 Aligned_cols=258 Identities=9% Similarity=0.047 Sum_probs=173.2
Q ss_pred EEECCCCCCCCCcCc-cCccccccccCCEEeccCCCCccCc-----hhhhcCc-cCCEeeccccccCCCcChhhhcCC--
Q 040318 34 CLDNGPSRIKNSLTE-LPSGISSLVSLQHLDVSYTDIRGLP-----HELTALL-NLRYLNLERTYHLSRFPPELICSF-- 104 (366)
Q Consensus 34 ~L~l~~~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~i~~l~-----~~i~~l~-~L~~L~L~~c~~~~~l~~~~l~~l-- 104 (366)
+++++++ .++. +|..+...++|++|++++|.++..+ ..+..++ +|++|++++ +.+.......+..+
T Consensus 2 ~~~ls~n----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLH----PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCC----TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS-SCGGGSCHHHHHHHHH
T ss_pred ccccccc----cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC-CCCCHHHHHHHHHHHh
Confidence 4678888 5665 4554555667999999999998665 5677888 899999999 57766543334443
Q ss_pred ---CCCcEEEccCCCCCCccccccccccchHHHHHhhcCC-CCcceEEEEecccccccc--ccccccc-cccccEEEEec
Q 040318 105 ---SKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCL-KLLNLISFSLYSSRGVRN--FLKFPKL-LRITQALSISD 177 (366)
Q Consensus 105 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~--~~~~~~~-~~~L~~L~l~~ 177 (366)
++|++|++++|.+... ........+..+ ++|+.|+++++....... +...... +.+|++|++++
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~---------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYK---------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp TSCTTCCEEECCSSCGGGS---------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred ccCCCccEEECcCCcCChH---------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 9999999999987221 122334456666 899999999888765432 2111111 35799999999
Q ss_pred cCCCCcCcc----chhhhc-ccCceEecccccceeeccccCccccccccCC-CCCcEEeEecCCCCcc-----cc-cccC
Q 040318 178 CEIPLLNVS----HLAYME-HLKDLVIDNSNLEELKTDCTGEVQKVLQCGF-RSLHLASIAFCSRVKD-----LT-WLAF 245 (366)
Q Consensus 178 ~~~~~~~~~----~l~~~~-~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~-~~L~~L~l~~~~~l~~-----l~-~l~~ 245 (366)
+...+.... .+..++ +|++|++++|.+.+.+...+. ..+ ..+ ++|+.|++++| .+++ ++ .+..
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~--~~l--~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA--KFL--ASIPASVTSLDLSAN-LLGLKSYAELAYIFSS 222 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH--HHH--HTSCTTCCEEECTTS-CGGGSCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH--HHH--HhCCCCCCEEECCCC-CCChhHHHHHHHHHhc
Confidence 876221211 334444 999999999988766542221 000 234 59999999999 5766 22 2333
Q ss_pred -CCCccEEEEEccCCccccccccccccccccccccccccccccccccccc-------ccccccCCCcCCCCccEEeccCC
Q 040318 246 -APNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAE-------NLKSIYQGALPLPQLKEIRVTQC 317 (366)
Q Consensus 246 -l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~L~~L~l~~c 317 (366)
.++|++|+|++|........ .+......+++|++|+++++. .+..+......+++|+.|+++++
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~--------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLE--------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHH--------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CCCCceEEECcCCCCCcHHHH--------HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 46999999999875443321 111245678999999999875 13333444556888999999987
Q ss_pred C
Q 040318 318 P 318 (366)
Q Consensus 318 ~ 318 (366)
+
T Consensus 295 ~ 295 (362)
T 3goz_A 295 E 295 (362)
T ss_dssp B
T ss_pred c
Confidence 4
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=135.20 Aligned_cols=203 Identities=12% Similarity=0.040 Sum_probs=145.9
Q ss_pred CCCcCEEEccCCCCCccchhhh--hcCCcccEEECCCCCCCCCcCcc-C----ccccccccCCEEeccCCCCccCc-hhh
Q 040318 5 YSNIPSILELSSNNKVFEPSWF--LSRASWTCLDNGPSRIKNSLTEL-P----SGISSLVSLQHLDVSYTDIRGLP-HEL 76 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~~~~l-~----~~~~~l~~L~~L~l~~~~i~~l~-~~i 76 (366)
+++|++|++++|.+....+..+ ..+++|++|++++| .++.. + ..+..+++|++|++++|.+..++ ..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n----~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV----SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC----CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc----cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 4679999999999986443325 88999999999999 55542 2 23457999999999999998665 578
Q ss_pred hcCccCCEeeccccccCCC---cChh-hhcCCCCCcEEEccCCCCCCccccccccccchHHHHH-hhcCCCCcceEEEEe
Q 040318 77 TALLNLRYLNLERTYHLSR---FPPE-LICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMK-ELLCLKLLNLISFSL 151 (366)
Q Consensus 77 ~~l~~L~~L~L~~c~~~~~---l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 151 (366)
+.+++|++|++++ +.+.. ++.. .+..+++|++|++++|.+... ..... .+..+++|++|++++
T Consensus 166 ~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----------~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 166 RAFPALTSLDLSD-NPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-----------TGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CCCTTCCEEECCS-CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-----------HHHHHHHHHHTCCCSSEECTT
T ss_pred ccCCCCCEEECCC-CCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-----------HHHHHHHHhcCCCCCEEECCC
Confidence 8999999999999 54432 2221 146789999999999987322 12222 346778888888887
Q ss_pred cccccc-ccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEe
Q 040318 152 YSSRGV-RNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLAS 230 (366)
Q Consensus 152 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~ 230 (366)
+..... +... ..+..+++|++|++++|+++.++. ..+++|+.|+
T Consensus 234 N~l~~~~p~~~------------------------~~~~~~~~L~~L~Ls~N~l~~lp~-----------~~~~~L~~L~ 278 (310)
T 4glp_A 234 NSLRATVNPSA------------------------PRCMWSSALNSLNLSFAGLEQVPK-----------GLPAKLRVLD 278 (310)
T ss_dssp SCCCCCCCSCC------------------------SSCCCCTTCCCEECCSSCCCSCCS-----------CCCSCCSCEE
T ss_pred CCCCccchhhH------------------------HhccCcCcCCEEECCCCCCCchhh-----------hhcCCCCEEE
Confidence 765443 1100 011223678888888888775533 3347888999
Q ss_pred EecCCCCcccccccCCCCccEEEEEccCC
Q 040318 231 IAFCSRVKDLTWLAFAPNLKIIVIMHCDD 259 (366)
Q Consensus 231 l~~~~~l~~l~~l~~l~~L~~L~L~~c~~ 259 (366)
+++| .++.++.+..+++|+.|++++|..
T Consensus 279 Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 279 LSSN-RLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred CCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence 9888 677777677888999999988764
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=9.5e-15 Score=127.16 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=111.8
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~ 83 (366)
++++.|++++|.+..+++..+..+++|++|++++| .++.++. .+..+++|++|++++|.++.++. .+..+++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN----QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC----cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 57999999999999988777999999999999999 7777654 47889999999999999997764 568899999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV 157 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 157 (366)
+|++++ +.+..++...+..+++|++|++++|.+... ....+..+++|+.|+++++.....
T Consensus 111 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 111 KLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSI-------------PAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp EEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred EEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCcc-------------CHHHcCcCcCCCEEECCCCcCCcc
Confidence 999999 788898887678999999999999987322 123466778888888887665543
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.8e-15 Score=132.72 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=90.0
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEe
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYL 85 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L 85 (366)
.++..+++.++.+.+++. +..+++|++|++++| .++.++ .+..+++|++|++++|.++.++. +..+++|++|
T Consensus 19 ~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n----~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS----NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTS----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHhcCCCcccccc--hhhcCcCcEEECcCC----Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEE
Confidence 345556677777777763 677888888888888 677777 47778888888888888887766 7788888888
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV 157 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 157 (366)
++++ +.+..++. +.. ++|++|++++|.+.. ...+..+++|+.|+++++...+.
T Consensus 91 ~L~~-N~l~~l~~--~~~-~~L~~L~L~~N~l~~---------------~~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 91 SVNR-NRLKNLNG--IPS-ACLSRLFLDNNELRD---------------TDSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp ECCS-SCCSCCTT--CCC-SSCCEEECCSSCCSB---------------SGGGTTCTTCCEEECTTSCCCBC
T ss_pred ECCC-CccCCcCc--ccc-CcccEEEccCCccCC---------------ChhhcCcccccEEECCCCcCCCC
Confidence 8888 67777765 444 888888888886621 13466677777777766554443
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=6e-15 Score=123.53 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=89.2
Q ss_pred hcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCC-cChhhhcCCC
Q 040318 27 LSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSR-FPPELICSFS 105 (366)
Q Consensus 27 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~-l~~~~l~~l~ 105 (366)
..+++|++|++++| .++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++ +.+.. .+.. +..++
T Consensus 41 ~~l~~L~~L~l~~n----~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~-l~~l~ 112 (197)
T 4ezg_A 41 AQMNSLTYITLANI----NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPN-LSGLT 112 (197)
T ss_dssp HHHHTCCEEEEESS----CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCC-CTTCT
T ss_pred hhcCCccEEeccCC----CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChh-hcCCC
Confidence 44566666666666 555555 3566666666666666555443 556666666666666 44443 2332 56666
Q ss_pred CCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecc-ccccccccccccccccccEEEEeccCCCCcC
Q 040318 106 KLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYS-SRGVRNFLKFPKLLRITQALSISDCEIPLLN 184 (366)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 184 (366)
+|++|++++|.+ ....+..+..+++|+.|+++++. ...++.+ ..+++|+.|+++++.. ..
T Consensus 113 ~L~~L~Ls~n~i-------------~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l----~~l~~L~~L~l~~n~i--~~ 173 (197)
T 4ezg_A 113 SLTLLDISHSAH-------------DDSILTKINTLPKVNSIDLSYNGAITDIMPL----KTLPELKSLNIQFDGV--HD 173 (197)
T ss_dssp TCCEEECCSSBC-------------BGGGHHHHTTCSSCCEEECCSCTBCCCCGGG----GGCSSCCEEECTTBCC--CC
T ss_pred CCCEEEecCCcc-------------CcHhHHHHhhCCCCCEEEccCCCCccccHhh----cCCCCCCEEECCCCCC--cC
Confidence 666666666655 22334555666666666666655 4444322 2234577777776665 22
Q ss_pred ccchhhhcccCceEecccccc
Q 040318 185 VSHLAYMEHLKDLVIDNSNLE 205 (366)
Q Consensus 185 ~~~l~~~~~L~~L~l~~~~l~ 205 (366)
...+..+++|+.|++++|.+.
T Consensus 174 ~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTTGGGCSSCCEEEECBC---
T ss_pred hHHhccCCCCCEEEeeCcccC
Confidence 226677788888888877664
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.1e-14 Score=120.23 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=98.7
Q ss_pred cccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHH
Q 040318 54 SSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEP 133 (366)
Q Consensus 54 ~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 133 (366)
..+++|++|++++|.++.+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+ ...
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~l-------------~~~ 103 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKDV-------------TSD 103 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTTC-------------BGG
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCcc-------------Ccc
Confidence 55777888888888777776 6777778888888774 5555553 77778888888877765 222
Q ss_pred HHHhhcCCCCcceEEEEeccccc--cccccccccccccccEEEEeccCCCCcCcc-chhhhcccCceEecccccceeecc
Q 040318 134 LMKELLCLKLLNLISFSLYSSRG--VRNFLKFPKLLRITQALSISDCEIPLLNVS-HLAYMEHLKDLVIDNSNLEELKTD 210 (366)
Q Consensus 134 ~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~~~ 210 (366)
.+..+..+++|+.|+++++.... ...+ ..+++|+.|+++++.. .... .+..+++|+.|+++++.+.++.
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~l~~L~~L~L~~n~~--i~~~~~l~~l~~L~~L~l~~n~i~~~~-- 175 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKI----NTLPKVNSIDLSYNGA--ITDIMPLKTLPELKSLNIQFDGVHDYR-- 175 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHH----TTCSSCCEEECCSCTB--CCCCGGGGGCSSCCEEECTTBCCCCCT--
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHH----hhCCCCCEEEccCCCC--ccccHhhcCCCCCCEEECCCCCCcChH--
Confidence 34556677778888877766554 2222 2345577888877763 2222 5677777888888777776543
Q ss_pred ccCccccccccCCCCCcEEeEecC
Q 040318 211 CTGEVQKVLQCGFRSLHLASIAFC 234 (366)
Q Consensus 211 ~~~~~~~~p~~~~~~L~~L~l~~~ 234 (366)
.. ..+++|+.|+++++
T Consensus 176 ~l--------~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 GI--------EDFPKLNQLYAFSQ 191 (197)
T ss_dssp TG--------GGCSSCCEEEECBC
T ss_pred Hh--------ccCCCCCEEEeeCc
Confidence 11 46777888888776
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=3.5e-14 Score=124.43 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=107.7
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.+++|+.|++++|.+..++. +..+++|++|++++| .++.++. +..+++|++|++++|.++.+|.... .+|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N----~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN----QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS----CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred hcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC----ccCCChh-hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 46899999999999999883 889999999999999 8888877 8899999999999999998875443 8999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGV 157 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 157 (366)
+|++++ +.+..++. +..+++|++|++++|.+.. ...+..+++|+.|+++++...+.
T Consensus 110 ~L~L~~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~---------------~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 110 RLFLDN-NELRDTDS--LIHLKNLEILSIRNNKLKS---------------IVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EEECCS-SCCSBSGG--GTTCTTCCEEECTTSCCCB---------------CGGGGGCTTCCEEECTTSCCCBC
T ss_pred EEEccC-CccCCChh--hcCcccccEEECCCCcCCC---------------ChHHccCCCCCEEECCCCcCcch
Confidence 999999 78888865 8999999999999998721 13577788888888887665544
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=2.4e-14 Score=116.67 Aligned_cols=138 Identities=17% Similarity=0.115 Sum_probs=110.6
Q ss_pred CCCCcCEEEccCCCCC--ccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCcc-CchhhhcCc
Q 040318 4 RYSNIPSILELSSNNK--VFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRG-LPHELTALL 80 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~-l~~~i~~l~ 80 (366)
..++|+.|++++|.+. .+|.. +..+++|++|++++| .++.+ ..+..+++|++|++++|.++. +|..+..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n----~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV----GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS----CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC----CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 4578999999999998 67776 788999999999999 77777 568889999999999999886 777777899
Q ss_pred cCCEeeccccccCCCcCh-hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccc
Q 040318 81 NLRYLNLERTYHLSRFPP-ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVR 158 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 158 (366)
+|++|++++ +.+..++. ..+..+++|++|++.+|.+... .......+..+++|+.|++..+.....+
T Consensus 96 ~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~----------~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 96 NLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNL----------NDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp TCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTS----------TTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcch----------HHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999999 67888762 3388899999999999976322 1111246778899999999887765544
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=2.8e-14 Score=121.63 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=80.5
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccC-chhhhcCccCCEee
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGL-PHELTALLNLRYLN 86 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~L~ 86 (366)
+.++.+++++..+|..+ .++|++|++++| .++.++. .+..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n----~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQN----TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSS----CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCC----cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 34555555666655541 245666666666 5555543 355566666666666666544 44556666666666
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKL 166 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 166 (366)
|++ +.+..+|.+.+..+++|++|++.+|.+... .+..+..+++|+.|+++++....++.- ....
T Consensus 87 Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~ 150 (220)
T 2v9t_B 87 LYG-NKITELPKSLFEGLFSLQLLLLNANKINCL-------------RVDAFQDLHNLNLLSLYDNKLQTIAKG--TFSP 150 (220)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTT--TTTT
T ss_pred CCC-CcCCccCHhHccCCCCCCEEECCCCCCCEe-------------CHHHcCCCCCCCEEECCCCcCCEECHH--HHhC
Confidence 666 555566555455566666666666655211 123455556666666666555444321 1112
Q ss_pred cccccEEEEeccCC
Q 040318 167 LRITQALSISDCEI 180 (366)
Q Consensus 167 ~~~L~~L~l~~~~~ 180 (366)
+++|+.|++.++..
T Consensus 151 l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 151 LRAIQTMHLAQNPF 164 (220)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CCCCCEEEeCCCCc
Confidence 33466666655543
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=4.5e-14 Score=136.45 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=49.0
Q ss_pred ccccEEEEeccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccccc-ccCC
Q 040318 168 RITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLTW-LAFA 246 (366)
Q Consensus 168 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~~-l~~l 246 (366)
++|+.|+++++....... +. ++|+.|++++|.++.++. ++. .+ ....+.|+.|++++| .++.++. +..+
T Consensus 160 ~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L-~~~~~~L~~L~Ls~N-~l~~lp~~l~~l 229 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RN-HHSEETEIFFRCREN-RITHIPENILSL 229 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC-----------CCEEEECCSS-CCCCCCGGGGGS
T ss_pred CCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hh-hcccccceEEecCCC-cceecCHHHhcC
Confidence 345555555554422211 22 677777777777765543 110 00 011233388888888 6777763 6678
Q ss_pred CCccEEEEEccCCcccc
Q 040318 247 PNLKIIVIMHCDDLEEI 263 (366)
Q Consensus 247 ~~L~~L~L~~c~~~~~~ 263 (366)
++|+.|+|++|......
T Consensus 230 ~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CTTEEEECCSSSCCHHH
T ss_pred CCCCEEEeeCCcCCCcC
Confidence 88999999888765543
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.1e-13 Score=116.87 Aligned_cols=167 Identities=20% Similarity=0.189 Sum_probs=91.0
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccCchh-hhcCccCCEee
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGLPHE-LTALLNLRYLN 86 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~~L~ 86 (366)
+.++..++++..+|.. ..++|++|++++| .++.++.. +..+++|++|++++|.++.++.. +..+++|++|+
T Consensus 10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG---IPAQTTYLDLETN----SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCccCCCCC---CCCCCcEEEcCCC----ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 3455555555555543 2346666666666 45555432 45566666666666666655443 35566666666
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKL 166 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 166 (366)
+++ +.+..++...+.++++|++|++++|.+... ....+..+++|+.|+++++.....+. .....
T Consensus 83 Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~ 146 (208)
T 2o6s_A 83 LST-NQLQSLPNGVFDKLTQLKELALNTNQLQSL-------------PDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDR 146 (208)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCCCT--TTTTT
T ss_pred CCC-CcCCccCHhHhcCccCCCEEEcCCCcCccc-------------CHhHhccCCcCCEEECCCCccceeCH--HHhcc
Confidence 666 455555554455666666666666655211 11234555666666666655544332 11122
Q ss_pred cccccEEEEeccCCCCcCccchhhhcccCceEecccccc
Q 040318 167 LRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLE 205 (366)
Q Consensus 167 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 205 (366)
+++|+.|++.++.. ...+++|+.|+++.+++.
T Consensus 147 l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 147 LTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CTTCCEEECCSCCB-------CCCTTTTHHHHHHHHHCT
T ss_pred CCCccEEEecCCCe-------ecCCCCHHHHHHHHHhCC
Confidence 34566776666543 123456777777665543
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=8.3e-14 Score=119.43 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=82.4
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchh-hhcCccCCEee
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHE-LTALLNLRYLN 86 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~~L~ 86 (366)
+.++.+++++..+|..+ .++|++|++++| .+..+ |..+..+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDN----QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEeEccCCCcCccCCCC---CCCCCEEEcCCC----ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 34555556666666541 256666666666 45554 34455566666666666666655532 45666666666
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKL 166 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 166 (366)
+++ +.+..++...+..+++|++|++.+|.+. .++..+..+++|+.|+++++....++. .....
T Consensus 95 Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~ 157 (229)
T 3e6j_A 95 LGT-NQLTVLPSAVFDRLVHLKELFMCCNKLT--------------ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDR 157 (229)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--------------SCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTT
T ss_pred CCC-CcCCccChhHhCcchhhCeEeccCCccc--------------ccCcccccCCCCCEEECCCCcCCccCH--HHHhC
Confidence 666 5566655544556666666666666552 222334555666666666655554432 11122
Q ss_pred cccccEEEEeccCC
Q 040318 167 LRITQALSISDCEI 180 (366)
Q Consensus 167 ~~~L~~L~l~~~~~ 180 (366)
+++|+.|++.++..
T Consensus 158 l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 158 LSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECTTSCB
T ss_pred CCCCCEEEeeCCCc
Confidence 34466666665543
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=117.94 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=99.6
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc--cccccccCCEEeccCCCCccCch-hhhcCccCCEe
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS--GISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRYL 85 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~--~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~L 85 (366)
+.++++++.+..+|..+ .+.+++|++++| .++.++. .+..+++|++|++++|.++.++. .+..+++|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N----~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNN----EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSS----CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCC----cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 46777777777777652 345677888887 6666632 35677888888888887776554 57777888888
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPK 165 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 165 (366)
++++ +.+..++.+.+..+++|++|++++|.+.. ..+..+..+++|+.|+++++....... ....
T Consensus 87 ~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~ 150 (220)
T 2v70_A 87 LLTS-NRLENVQHKMFKGLESLKTLMLRSNRITC-------------VGNDSFIGLSSVRLLSLYDNQITTVAP--GAFD 150 (220)
T ss_dssp ECCS-SCCCCCCGGGGTTCSSCCEEECTTSCCCC-------------BCTTSSTTCTTCSEEECTTSCCCCBCT--TTTT
T ss_pred ECCC-CccCccCHhHhcCCcCCCEEECCCCcCCe-------------ECHhHcCCCccCCEEECCCCcCCEECH--HHhc
Confidence 8877 67777766657778888888888776622 123456667778888887776655421 1112
Q ss_pred ccccccEEEEeccCC
Q 040318 166 LLRITQALSISDCEI 180 (366)
Q Consensus 166 ~~~~L~~L~l~~~~~ 180 (366)
.+++|+.|++.++..
T Consensus 151 ~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 151 TLHSLSTLNLLANPF 165 (220)
T ss_dssp TCTTCCEEECCSCCE
T ss_pred CCCCCCEEEecCcCC
Confidence 345577777776654
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=5.5e-14 Score=112.06 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=98.9
Q ss_pred CCCCcCEEEccCCCCC--ccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCcc-CchhhhcCc
Q 040318 4 RYSNIPSILELSSNNK--VFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRG-LPHELTALL 80 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~-l~~~i~~l~ 80 (366)
..++|+.|++++|.+. .++.. +..+++|++|++++| .++.+ ..+..+++|++|++++|.++. +|..+..++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n----~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV----GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS----CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC----CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 4578899999999888 57765 788999999999999 66777 557889999999999998886 777777899
Q ss_pred cCCEeeccccccCCCcCh-hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEE
Q 040318 81 NLRYLNLERTYHLSRFPP-ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISF 149 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 149 (366)
+|++|++++ +.+..++. ..+..+++|++|++++|.+... .......+..+++|+.|++
T Consensus 89 ~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~----------~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNL----------NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGS----------TTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccch----------HHHHHHHHHHCCCcccccC
Confidence 999999998 67777641 3388899999999999876221 1111235666777777654
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=2.5e-13 Score=131.23 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=86.6
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEee
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLN 86 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~ 86 (366)
+|+.|+++++++..+|..+ +++|++|++++| .++.+| ..+++|++|++++|.++.+|. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N----~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN----ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS----CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCC----CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 5556666666555555542 255666666666 445555 234556666666665555554 332 566666
Q ss_pred ccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccc
Q 040318 87 LERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKL 166 (366)
Q Consensus 87 L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 166 (366)
+++ +.+..+|. .+++|+.|++++|.+... +. .+++|+.|+++++....++.+.
T Consensus 127 Ls~-N~l~~lp~----~l~~L~~L~Ls~N~l~~l--------------p~---~l~~L~~L~Ls~N~L~~lp~l~----- 179 (571)
T 3cvr_A 127 VDN-NQLTMLPE----LPALLEYINADNNQLTML--------------PE---LPTSLEVLSVRNNQLTFLPELP----- 179 (571)
T ss_dssp CCS-SCCSCCCC----CCTTCCEEECCSSCCSCC--------------CC---CCTTCCEEECCSSCCSCCCCCC-----
T ss_pred CCC-CcCCCCCC----cCccccEEeCCCCccCcC--------------CC---cCCCcCEEECCCCCCCCcchhh-----
Confidence 655 45555544 455566666665554211 00 2355556666555554443311
Q ss_pred cccccEEEEeccCCCCcCccchhhhccc-------CceEecccccceeeccccCccccccccCCCCCcEEeEecC
Q 040318 167 LRITQALSISDCEIPLLNVSHLAYMEHL-------KDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFC 234 (366)
Q Consensus 167 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~ 234 (366)
++|+.|+++++....... +.. +| +.|++++|.++.++.... .+++|+.|++++|
T Consensus 180 -~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~---------~l~~L~~L~L~~N 240 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL---------SLDPTCTIILEDN 240 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGGG---------GSCTTEEEECCSS
T ss_pred -CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHh---------cCCCCCEEEeeCC
Confidence 345566665554421111 111 33 555555555554433211 3555666666555
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=2e-13 Score=116.34 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=104.8
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchh-hhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHE-LTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~ 83 (366)
++|+.|++++|.+..++...|..+++|++|++++| .+..+ |..+..+++|++|++++|.++.+|.. +..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN----QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS----CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC----cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence 57888999999888888766888899999999998 67776 56688889999999999988887765 57788999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSR 155 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 155 (366)
+|++++ +.+..++.+.+..+++|++|++.+|.+... ....+..+++|+.|+++++...
T Consensus 108 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 108 LLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTI-------------AKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEE-------------CHHHHhCCCCCCEEEeCCCCcC
Confidence 999988 778777655588889999999998877332 1234667888888888876653
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2.2e-13 Score=125.04 Aligned_cols=175 Identities=19% Similarity=0.153 Sum_probs=117.6
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-cc-ccccCCEEeccCCCCccCc-hhhhcCccCCEe
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-IS-SLVSLQHLDVSYTDIRGLP-HELTALLNLRYL 85 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~-~l~~L~~L~l~~~~i~~l~-~~i~~l~~L~~L 85 (366)
+.++++++++..+|..+ .+.+++|++++| .++.++.. +. .+++|++|++++|.++.++ ..+..+++|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N----~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---PSYTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSSCCSSC---CTTCSEEECCSS----CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCccCccC---CCCCCEEECCCC----CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 56788888888887652 346788888888 77777654 44 7888888888888888665 357788888888
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccc-
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFP- 164 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~- 164 (366)
+|++ +.+..++...+..+++|++|++.+|.+. ...+..+..+++|+.|+++++....++......
T Consensus 94 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~-------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 159 (361)
T 2xot_A 94 DLSS-NHLHTLDEFLFSDLQALEVLLLYNNHIV-------------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159 (361)
T ss_dssp ECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC-------------EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred ECCC-CcCCcCCHHHhCCCcCCCEEECCCCccc-------------EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence 8888 6777777665788888888888888762 122345677788888888877766654322110
Q ss_pred cccccccEEEEeccCCCCcCccchhhhcc--cCceEeccccc
Q 040318 165 KLLRITQALSISDCEIPLLNVSHLAYMEH--LKDLVIDNSNL 204 (366)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~l 204 (366)
..+++|+.|+++++.........+..++. ++.|++.+|.+
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 23455777777776652222224455554 36677766544
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.8e-13 Score=111.18 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=107.8
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhh-hcCccC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHEL-TALLNL 82 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i-~~l~~L 82 (366)
++++|+.|++++|.+..++.. ....++|++|++++| .++.+ ..+..+++|++|++++|.++.+|..+ ..+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~-~~~~~~L~~L~Ls~N----~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDN----EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCG-GGGTTCCSEEECCSS----CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCchhHHh-hhcCCCCCEEECCCC----CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 678999999999999988652 444459999999999 77777 45888999999999999999887655 899999
Q ss_pred CEeeccccccCCCcCh-hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccc
Q 040318 83 RYLNLERTYHLSRFPP-ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRG 156 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 156 (366)
++|++++ +.+..+|. ..+..+++|++|++.+|.+... .......+..+++|+.|+++.+....
T Consensus 91 ~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~----------~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNK----------KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGS----------TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCc----------HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999 78888875 2388899999999999977222 11112346778899999888766543
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=6.3e-13 Score=113.94 Aligned_cols=133 Identities=22% Similarity=0.202 Sum_probs=114.2
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccCchh-hhcCccC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGLPHE-LTALLNL 82 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L 82 (366)
.++|++|++++|.+..+++..|..+++|++|++++| .++.++.. +..+++|++|++++|.++.++.. +..+++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N----~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN----QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC----CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 478999999999999987666999999999999999 78888754 67899999999999999988764 6889999
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccc
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRG 156 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 156 (366)
++|++++ +.+..+|.. +..+++|++|++++|.+... ....+..+++|+.|.+.++....
T Consensus 115 ~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 115 KELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI-------------PHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC-------------CTTTTTTCTTCCEEECTTSCBCT
T ss_pred CeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc-------------CHHHHhCCCCCCEEEeeCCCccC
Confidence 9999999 888999987 89999999999999987332 12457788999999999887653
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=8.8e-13 Score=120.97 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=120.2
Q ss_pred CCcCEEEccCCCCCccchhhhh-cCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccC
Q 040318 6 SNIPSILELSSNNKVFEPSWFL-SRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNL 82 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~-~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L 82 (366)
+.++.|+|++|.+..++...+. .+++|++|++++| .+..++. .+..+++|++|++++|.++.++. .+..+++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC----cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 4589999999999998887677 8999999999999 7888764 58889999999999999997765 57899999
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccc
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLK 162 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 162 (366)
++|+|++ +.+..++...+.++++|++|++++|.+...+ ......+..+++|+.|+++++....++.-.
T Consensus 115 ~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~- 182 (361)
T 2xot_A 115 EVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFP----------VELIKDGNKLPKLMLLDLSSNKLKKLPLTD- 182 (361)
T ss_dssp CEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCC----------GGGTC----CTTCCEEECCSSCCCCCCHHH-
T ss_pred CEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCeeC----------HHHhcCcccCCcCCEEECCCCCCCccCHHH-
Confidence 9999999 7888876555899999999999999874331 112222367899999999988776654210
Q ss_pred ccccccc--ccEEEEeccCC
Q 040318 163 FPKLLRI--TQALSISDCEI 180 (366)
Q Consensus 163 ~~~~~~~--L~~L~l~~~~~ 180 (366)
...++. ++.|++.++..
T Consensus 183 -~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 183 -LQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -HHHSCHHHHTTEECCSSCE
T ss_pred -hhhccHhhcceEEecCCCc
Confidence 011111 46777776554
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=110.46 Aligned_cols=133 Identities=9% Similarity=0.128 Sum_probs=112.6
Q ss_pred CCcCEEEccCCCCCcc-chhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccC
Q 040318 6 SNIPSILELSSNNKVF-EPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNL 82 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l-~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L 82 (366)
+.++.|++++|.+..+ +..+|..+++|++|++++| .++.++. .+..+++|++|++++|.++.++. .+..+++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN----KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC----cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 4688999999999987 4456889999999999999 7888765 68889999999999999997765 48899999
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccc
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRG 156 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 156 (366)
++|++++ +.+..++...+..+++|++|++.+|.+.. ..+..+..+++|+.|+++++....
T Consensus 108 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 108 KTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITT-------------VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCC-------------BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCE-------------ECHHHhcCCCCCCEEEecCcCCcC
Confidence 9999999 78888765558999999999999998732 224667889999999999887653
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=7.8e-13 Score=110.13 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=100.2
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc--ccccccCCEEeccCCCCccC-chhhhcCccCCEe
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG--ISSLVSLQHLDVSYTDIRGL-PHELTALLNLRYL 85 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~--~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~L 85 (366)
+.++++++++..+|..+ .++|++|++++| .++.++.. +..+++|++|++++|.++.+ |..+..+++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n----~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDN----ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSC----CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECCCC----cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 67899999998888763 338999999999 77887653 78899999999999998866 6678899999999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSR 155 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 155 (366)
++++ +.+..++...+..+++|++|++++|.+. ...+..+..+++|+.|+++++...
T Consensus 84 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGE-NKIKEISNKMFLGLHQLKTLNLYDNQIS-------------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCS-CCCCEECSSSSTTCTTCCEEECCSSCCC-------------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCC-CcCCccCHHHhcCCCCCCEEECCCCcCC-------------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999 7888877665788999999999999772 222455667788888888766543
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=3.6e-12 Score=107.40 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=114.1
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccCchh-hhcCccC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGLPHE-LTALLNL 82 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L 82 (366)
.++|++|++++|.+..++...+..+++|++|++++| .++.++.. +..+++|++|++++|.++.++.. +..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN----KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC----ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 467999999999999988887899999999999999 77888654 57899999999999999987764 6889999
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccc
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRG 156 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 156 (366)
++|++++ +.+..++...+..+++|++|++.+|.+... ....+..+++|+.|+++++....
T Consensus 103 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 103 KELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSCCBCC
T ss_pred CEEEcCC-CcCcccCHhHhccCCcCCEEECCCCcccee-------------CHHHhccCCCccEEEecCCCeec
Confidence 9999999 788888876678999999999999987322 12446788999999999886653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=6.7e-15 Score=142.69 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=111.3
Q ss_pred CCCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCC----------CCcCccCccccccccCCEEe-ccCCCCc
Q 040318 2 NIRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIK----------NSLTELPSGISSLVSLQHLD-VSYTDIR 70 (366)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~----------~~~~~l~~~~~~l~~L~~L~-l~~~~i~ 70 (366)
...+++|+.|+|++|.+..+|.. ++++++|+.|+++++... +..+.+|..++.+.+|+.|+ ++.+.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34677888888888888778777 778888888888665200 00112344456666777766 4444333
Q ss_pred cCch------hhhcC--ccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCC
Q 040318 71 GLPH------ELTAL--LNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLK 142 (366)
Q Consensus 71 ~l~~------~i~~l--~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 142 (366)
.++. .+..+ ..|++|++++ +.+..+|. +..+++|+.|++++|.+. .++..++.++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~-n~l~~lp~--~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~ 486 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAH-KDLTVLCH--LEQLLLVTHLDLSHNRLR--------------ALPPALAALR 486 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTT-SCCSSCCC--GGGGTTCCEEECCSSCCC--------------CCCGGGGGCT
T ss_pred hhhhhhhhcccccccCccCceEEEecC-CCCCCCcC--ccccccCcEeecCccccc--------------ccchhhhcCC
Confidence 3221 11111 2467777777 56666665 677777777777777652 2234566666
Q ss_pred CcceEEEEeccccccccccccccccccccEEEEeccCCCCcCccchhhhcccCceEecccccceee-ccccCcccccccc
Q 040318 143 LLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELK-TDCTGEVQKVLQC 221 (366)
Q Consensus 143 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~-~~~~~~~~~~p~~ 221 (366)
+|+.|+++++....++ .++.+++|+.|++++|.++.+. ...+ .
T Consensus 487 ~L~~L~Ls~N~l~~lp----------------------------~l~~l~~L~~L~Ls~N~l~~~~~p~~l--------~ 530 (567)
T 1dce_A 487 CLEVLQASDNALENVD----------------------------GVANLPRLQELLLCNNRLQQSAAIQPL--------V 530 (567)
T ss_dssp TCCEEECCSSCCCCCG----------------------------GGTTCSSCCEEECCSSCCCSSSTTGGG--------G
T ss_pred CCCEEECCCCCCCCCc----------------------------ccCCCCCCcEEECCCCCCCCCCCcHHH--------h
Confidence 7777766665544432 3344555555555555555442 2112 2
Q ss_pred CCCCCcEEeEecCCCCccccc-----ccCCCCccEEE
Q 040318 222 GFRSLHLASIAFCSRVKDLTW-----LAFAPNLKIIV 253 (366)
Q Consensus 222 ~~~~L~~L~l~~~~~l~~l~~-----l~~l~~L~~L~ 253 (366)
.+++|+.|++++| .++.+++ ...+|+|+.|+
T Consensus 531 ~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 531 SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 4566666666666 3444332 11356666654
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=107.77 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=98.0
Q ss_pred CEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCch-hhhcCccCCEeec
Q 040318 9 PSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRYLNL 87 (366)
Q Consensus 9 ~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~L~L 87 (366)
+.++++++++..+|..+ .++|++|++++| .++.+|..+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n----~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN----QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS----CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC----cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 57888888888888752 368899999999 778888878889999999999998887654 5788899999999
Q ss_pred cccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccc
Q 040318 88 ERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSS 154 (366)
Q Consensus 88 ~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 154 (366)
++ +.+..++.+.+..+++|++|++.+|.+... ....+..+++|+.|+++++..
T Consensus 86 s~-N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 86 SY-NRLRCIPPRTFDGLKSLRLLSLHGNDISVV-------------PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CS-SCCCBCCTTTTTTCTTCCEEECCSSCCCBC-------------CTTTTTTCTTCCEEECCSSCE
T ss_pred CC-CccCEeCHHHhCCCCCCCEEECCCCCCCee-------------ChhhhhcCccccEEEeCCCCe
Confidence 88 778888766688899999999998877322 123456677888888876554
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=5.2e-12 Score=105.15 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=96.1
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNL 82 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L 82 (366)
.++|+.|++++|.+..+|.. |..+++|++|++++| .++.++. .+..+++|++|++++|.++.++. .+..+++|
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN----RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC----cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 35899999999999999865 899999999999999 7888764 58889999999999999997765 68899999
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
++|++++ +.+..++.+.+..+++|+.|++.+|.+
T Consensus 105 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999 889999887688999999999999976
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=6.3e-12 Score=103.10 Aligned_cols=127 Identities=21% Similarity=0.176 Sum_probs=78.5
Q ss_pred cCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCchh-hhcCccCCEe
Q 040318 8 IPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPHE-LTALLNLRYL 85 (366)
Q Consensus 8 L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~~L 85 (366)
.+.++++++++..+|.. ..++|++|++++| .++.++. .+..+++|++|++++|.++.++.. +..+++|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESN----KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCC----cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 35566666666666654 2356777777777 5555544 345667777777777776665543 4667777777
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccc
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSR 155 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 155 (366)
++++ +.+..++...+..+++|++|++.+|.+... ....+..+++|+.|+++++...
T Consensus 82 ~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 82 YLHE-NKLQSLPNGVFDKLTQLKELALDTNQLKSV-------------PDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCC-CCccccCHHHhhCCcccCEEECcCCcceEe-------------CHHHhcCCcccCEEEecCCCee
Confidence 7777 566666655456677777777777665221 1123455667777777666544
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=2.7e-12 Score=124.39 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=64.3
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEee
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLN 86 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~ 86 (366)
.|+.|++++|.+..+|. +..+++|++|++++| .++.+|..++.+++|++|++++|.++.+| .++.+++|++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N----~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN----RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS----CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc----cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 45666666666666654 566666666666666 55566666666666666666666666665 566666666666
Q ss_pred ccccccCCCc--ChhhhcCCCCCcEEEccCCCC
Q 040318 87 LERTYHLSRF--PPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 87 L~~c~~~~~l--~~~~l~~l~~L~~L~l~~~~~ 117 (366)
+++ +.+..+ |.. +..+++|+.|++++|.+
T Consensus 515 Ls~-N~l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 515 LCN-NRLQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCS-SCCCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred CCC-CCCCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 666 555555 443 66666666666666654
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=6e-12 Score=113.87 Aligned_cols=260 Identities=12% Similarity=0.034 Sum_probs=149.4
Q ss_pred CCCcCEEEccCCCCC--ccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccc--------cccCCEEeccCCCCccCc
Q 040318 5 YSNIPSILELSSNNK--VFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISS--------LVSLQHLDVSYTDIRGLP 73 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~--------l~~L~~L~l~~~~i~~l~ 73 (366)
+++|+.|+|++|.+. ..... .++.++.+.+..+ . +|. .+.+ |.+|+.|++.. +++.++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~ 116 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----F---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE 116 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----E---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC
T ss_pred hccCeEEecCcceeEEecCccc---ccccccccccccc----c---cCHHHhcccccccccccCCCcEEECCc-cccchh
Confidence 678999999999887 33322 2333444554444 2 332 3455 88899999888 777665
Q ss_pred h-hhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcc-eEEEEe
Q 040318 74 H-ELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLN-LISFSL 151 (366)
Q Consensus 74 ~-~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~ 151 (366)
. .+.+|++|+.+++.. +.+..++..++..+.++..+.......... ...-...++..+..|+ .+.+..
T Consensus 117 ~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~---------~~~i~~~~f~~~~~L~~~i~~~~ 186 (329)
T 3sb4_A 117 DAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRF---------KNRWEHFAFIEGEPLETTIQVGA 186 (329)
T ss_dssp TTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHT---------STTTTTSCEEESCCCEEEEEECT
T ss_pred HHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhc---------cccccccccccccccceeEEecC
Confidence 4 578888999999988 677777776677777777776654210000 0000011122333343 222221
Q ss_pred ccccccccc-cccccccccccEEEEeccCCCCcCcc-ch-hhhcccCceEecccccceeeccccCccccccccCCCCCcE
Q 040318 152 YSSRGVRNF-LKFPKLLRITQALSISDCEIPLLNVS-HL-AYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHL 228 (366)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~l-~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~ 228 (366)
. ...+.. ........+++.+.+.+.-. .... .+ ..+++|+.+++..++++.++..++ ..|.+|+.
T Consensus 187 ~--~~l~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF--------~~~~~L~~ 254 (329)
T 3sb4_A 187 M--GKLEDEIMKAGLQPRDINFLTIEGKLD--NADFKLIRDYMPNLVSLDISKTNATTIPDFTF--------AQKKYLLK 254 (329)
T ss_dssp T--CCHHHHHHHTTCCGGGCSEEEEEECCC--HHHHHHHHHHCTTCCEEECTTBCCCEECTTTT--------TTCTTCCE
T ss_pred C--CcHHHHHhhcccCccccceEEEeeeec--HHHHHHHHHhcCCCeEEECCCCCcceecHhhh--------hCCCCCCE
Confidence 1 111110 00011233455666655432 2212 22 236788888888878888877666 47888888
Q ss_pred EeEecCCCCcccc--cccCCCCcc-EEEEEccCCcccccccccccccccccccccccccccccccccccccccccCC-Cc
Q 040318 229 ASIAFCSRVKDLT--WLAFAPNLK-IIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG-AL 304 (366)
Q Consensus 229 L~l~~~~~l~~l~--~l~~l~~L~-~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~ 304 (366)
|++.++ ++.++ .+..+++|+ .+++.+ .++.+.. .++.++++|+.+++.+ ..++.+... ..
T Consensus 255 l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~~L~~l~l~~-n~i~~I~~~aF~ 318 (329)
T 3sb4_A 255 IKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCDNLRYVLATG-DKITTLGDELFG 318 (329)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCTTEEEEEECS-SCCCEECTTTTC
T ss_pred EECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCccCCEEEeCC-CccCccchhhhc
Confidence 888774 66654 356788888 888876 3443321 2667788888888854 245555433 33
Q ss_pred CCCCccEEe
Q 040318 305 PLPQLKEIR 313 (366)
Q Consensus 305 ~~~~L~~L~ 313 (366)
.+++|+.+.
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 466776664
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=3.4e-12 Score=103.78 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=91.4
Q ss_pred cCCcccEEECCCCCCCCCcC--ccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCC-cChhhhcCC
Q 040318 28 SRASWTCLDNGPSRIKNSLT--ELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSR-FPPELICSF 104 (366)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~--~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~-l~~~~l~~l 104 (366)
..++|++|++++| .+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++ +.+.. +|.. +..+
T Consensus 22 ~~~~L~~L~l~~n----~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNC----KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE-NRIFGGLDML-AEKL 94 (168)
T ss_dssp CTTSCSEEECCSC----BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES-CCCCSCCCHH-HHHC
T ss_pred CcccCCEEECCCC----CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC-CcCchHHHHH-HhhC
Confidence 4588999999999 666 7888788999999999999999877 7788999999999999 67777 6653 7779
Q ss_pred CCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccc
Q 040318 105 SKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVR 158 (366)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 158 (366)
++|++|++++|.+... ..+..+..+++|+.|+++++.....+
T Consensus 95 ~~L~~L~Ls~N~l~~~------------~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDI------------STLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp TTCCEEECBSSSCCSS------------GGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred CCCCEEeccCCccCcc------------hhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 9999999999987322 22356778888999988877665443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=2.8e-12 Score=102.10 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=90.5
Q ss_pred CCCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCc-cCccccccccCCEEeccCCCCccCc--hhhhcC
Q 040318 3 IRYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTE-LPSGISSLVSLQHLDVSYTDIRGLP--HELTAL 79 (366)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~i~~l~--~~i~~l 79 (366)
..+++|+.|++++|.+..+ .. +..+++|++|++++| .++. +|..+..+++|++|++++|.++.++ ..++.+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN----RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS----CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred hhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC----cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence 3689999999999999988 33 899999999999999 7777 6776777999999999999999765 788999
Q ss_pred ccCCEeeccccccCCCcCh---hhhcCCCCCcEEEcc
Q 040318 80 LNLRYLNLERTYHLSRFPP---ELICSFSKLEVLRML 113 (366)
Q Consensus 80 ~~L~~L~L~~c~~~~~l~~---~~l~~l~~L~~L~l~ 113 (366)
++|++|++++ +.+..++. ..+..+++|+.|+++
T Consensus 113 ~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 113 ENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999999 67777765 458899999999875
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=8.9e-12 Score=103.68 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCcCEEEccCCCCCccchh-hhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCch-hhhcCccC
Q 040318 6 SNIPSILELSSNNKVFEPS-WFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPH-ELTALLNL 82 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L 82 (366)
++|+.|++++|.+..++.. .+..+++|++|++++| .++.+ |..+..+++|++|++++|.++.++. .+..+++|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN----QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC----CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 4899999999999988763 5889999999999999 77777 6678899999999999999996654 48899999
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
++|++++ +.+..++.+.+..+++|++|++.+|.+
T Consensus 105 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 105 KTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 9999999 788877554588999999999999977
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=6.5e-12 Score=125.37 Aligned_cols=108 Identities=22% Similarity=0.240 Sum_probs=95.8
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
.++.|+.|+|++|.+..++.. +..+++|++|+|++| .++.+|..++.+++|++|+|++|.++.+|..++.+++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N----~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN----SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS----CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred cCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC----cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 578899999999999888888 448999999999999 777888888899999999999999999999999999999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCC
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGAD 118 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~ 118 (366)
+|+|++ +.++.+|.+ +.++++|++|++++|.+.
T Consensus 297 ~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 297 YFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEECCC-CCCCccChh-hhcCCCccEEeCCCCccC
Confidence 999999 688889887 899999999999999874
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=2.8e-11 Score=99.14 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=91.4
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccCchh-hhcCccC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGLPHE-LTALLNL 82 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L 82 (366)
.++|+.|++++|.+..++...+..+++|++|++++| .++.++.. +..+++|++|++++|.++.+|.. +..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN----QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC----cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence 468899999999998888777888999999999999 77777654 57789999999999988877654 5788999
Q ss_pred CEeeccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 83 RYLNLERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
++|++++ +.+..++.+.+..+++|++|++.+|.+
T Consensus 103 ~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 103 KELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECcC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 9999998 788888877567899999999999876
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=1.1e-11 Score=101.68 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=92.6
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCccc-cccccCCEEeccCCCCccCch--hhhcCccC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGI-SSLVSLQHLDVSYTDIRGLPH--ELTALLNL 82 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~-~~l~~L~~L~l~~~~i~~l~~--~i~~l~~L 82 (366)
++|+.|++++|.+..++ . +..+++|++|++++| .++.+|..+ ..+++|++|++++|.++.+|. .+..+++|
T Consensus 42 ~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN----RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115 (176)
T ss_dssp TCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS----CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred CCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC----cccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCC
Confidence 49999999999999883 3 899999999999999 788887655 789999999999999998887 78899999
Q ss_pred CEeeccccccCCCcChh---hhcCCCCCcEEEccCCCC
Q 040318 83 RYLNLERTYHLSRFPPE---LICSFSKLEVLRMLESGA 117 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~~---~l~~l~~L~~L~l~~~~~ 117 (366)
++|++++ +.+..+|.. ++..+++|+.|++.++..
T Consensus 116 ~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 116 TYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999 677777763 488899999999999865
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=2.2e-11 Score=110.17 Aligned_cols=282 Identities=12% Similarity=0.050 Sum_probs=161.2
Q ss_pred CCcCEEEccCCCCCccchhhhhc-CCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhc------
Q 040318 6 SNIPSILELSSNNKVFEPSWFLS-RASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTA------ 78 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~-~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~------ 78 (366)
++++.|.+.|+ +....-..+.. +++|++||+++| .+......-+.++.++.+.+..+.+.. ..+.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n----~i~~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNA----EIKMYSGKAGTYPNGKFYIYMANFVPA--YAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEE----EECCEEESSSSSGGGCCEEECTTEECT--TTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcc----eeEEecCccccccccccccccccccCH--HHhcccccccc
Confidence 45777777764 22111111333 677888888888 555211111223334555555543321 24566
Q ss_pred --CccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecc---
Q 040318 79 --LLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYS--- 153 (366)
Q Consensus 79 --l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--- 153 (366)
+.+|+.+++.. .+..++..++.+|++|+.|++..+.+.+. ...++..+.++..+......
T Consensus 98 ~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-------------~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 98 KGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNL-------------LPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp EECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEE-------------CTTSSCTTTCEEEECTTCTHHHH
T ss_pred cccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCcccc-------------chhhhcCCCceEEecCcchhhhh
Confidence 99999999987 67788887799999999999999876322 12334444444433332210
Q ss_pred -cccccccccccccccccc-EEEEeccCCCCcCccchh---hhcccCceEecccccceeeccccCccccccccCCCCCcE
Q 040318 154 -SRGVRNFLKFPKLLRITQ-ALSISDCEIPLLNVSHLA---YMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHL 228 (366)
Q Consensus 154 -~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~ 228 (366)
...+.... ...+..|+ .+.+..... ....... ...++..+.+.+. +......... ..|++|+.
T Consensus 163 ~~~~i~~~~--f~~~~~L~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~-------~~~~~L~~ 230 (329)
T 3sb4_A 163 FKNRWEHFA--FIEGEPLETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIR-------DYMPNLVS 230 (329)
T ss_dssp TSTTTTTSC--EEESCCCEEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH-------HHCTTCCE
T ss_pred ccccccccc--cccccccceeEEecCCCc--HHHHHhhcccCccccceEEEeee-ecHHHHHHHH-------HhcCCCeE
Confidence 00111100 01122344 333333222 1111111 2345566666542 1111110000 24899999
Q ss_pred EeEecCCCCcccc--cccCCCCccEEEEEccCCccccccccccccccccccccccccccc-ccccccccccccccCC-Cc
Q 040318 229 ASIAFCSRVKDLT--WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLE-LLDLYHAENLKSIYQG-AL 304 (366)
Q Consensus 229 L~l~~~~~l~~l~--~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~-~~ 304 (366)
+++.++ .++.++ .+..+++|+.|++.++ ++.+.. .++.++++|+ .+.+.+ .++.+... ..
T Consensus 231 l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~ 294 (329)
T 3sb4_A 231 LDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTAIEFGAFM 294 (329)
T ss_dssp EECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCEECTTTTT
T ss_pred EECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceEEchhhhh
Confidence 999988 688876 4678999999999875 444432 2677899999 999977 66666533 44
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCCCcceeEEE
Q 040318 305 PLPQLKEIRVTQCPKLKTLPLNSSSTKLRNIVIS 338 (366)
Q Consensus 305 ~~~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~ 338 (366)
.|++|+.+++.+ .+++.++.........++.+.
T Consensus 295 ~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 295 GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 689999999976 478888876555435555553
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=3.5e-11 Score=98.36 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=89.2
Q ss_pred cCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchh-hhcCccCCEe
Q 040318 8 IPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHE-LTALLNLRYL 85 (366)
Q Consensus 8 L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~~L 85 (366)
-+.++++++.+..+|..+ .++|++|++++| .+..+ |..+..+++|++|++++|+++.+|.. +..+++|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNN----QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCC----CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 368899999999998863 389999999999 77887 55688899999999999999988775 5789999999
Q ss_pred eccccccCCCcChhhhcCCCCCcEEEccCCCCC
Q 040318 86 NLERTYHLSRFPPELICSFSKLEVLRMLESGAD 118 (366)
Q Consensus 86 ~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~ 118 (366)
+|++ +.+..++.+.+..+++|++|++.+|.+.
T Consensus 87 ~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLND-NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCC-CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999 8888888776889999999999999874
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=5.3e-12 Score=126.04 Aligned_cols=115 Identities=21% Similarity=0.244 Sum_probs=97.4
Q ss_pred chhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhh
Q 040318 22 EPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELI 101 (366)
Q Consensus 22 ~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l 101 (366)
++..+..++.|++|++++| .+..+|..++.+++|++|+|++|.++.+|..++.+++|++|+|++ +.+..+|.+ +
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n----~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~-~ 289 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNL----QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE-L 289 (727)
T ss_dssp ------CCCCCCEEECTTS----CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSS-G
T ss_pred ChhhhccCCCCcEEECCCC----CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChh-h
Confidence 3445888999999999999 778999888899999999999999999999999999999999999 778899887 8
Q ss_pred cCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccc
Q 040318 102 CSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRG 156 (366)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 156 (366)
.++++|++|++++|.+. .++..+..+++|+.|+++++....
T Consensus 290 ~~l~~L~~L~L~~N~l~--------------~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT--------------TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGGTTCSEEECCSSCCC--------------CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred cCCCCCCEEECCCCCCC--------------ccChhhhcCCCccEEeCCCCccCC
Confidence 99999999999999772 334558889999999999887653
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=3.6e-11 Score=97.93 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=89.1
Q ss_pred CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCcc-CccccccccCCEEeccCCCCccCchh-hhcCccCCE
Q 040318 7 NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTEL-PSGISSLVSLQHLDVSYTDIRGLPHE-LTALLNLRY 84 (366)
Q Consensus 7 ~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L~~ 84 (366)
..+.++++++.+..+|..+ .++|++|++++| .++.+ |..+..+++|++|++++|+++.+|.. +..+++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDN----QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCC----cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 3578999999999998763 488999999999 77887 55688899999999999999988765 588999999
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
|+|++ +.+..++.+.+..+++|++|++.+|.+
T Consensus 83 L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 83 LSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp EECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCC-CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99999 788888876688999999999999976
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=4.8e-13 Score=111.98 Aligned_cols=148 Identities=12% Similarity=0.107 Sum_probs=114.5
Q ss_pred CCcCEEEccCC--CCCccchhhhhcCCcccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 6 SNIPSILELSS--NNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~--~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
-.++...+.+. .++.+|.. +..+++|++|++++| .++.+| .+..+++|++|++++|.++.+|..+..+++|+
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n----~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN----NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLE 96 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE----EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred cchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC----CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence 34556666654 45566665 889999999999999 778888 68889999999999999999998888889999
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccc----
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRN---- 159 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---- 159 (366)
+|++++ +.+..+|. +..+++|++|++.+|.+... .....+..+++|+.|+++++.......
T Consensus 97 ~L~L~~-N~l~~l~~--~~~l~~L~~L~l~~N~i~~~------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 97 ELWISY-NQIASLSG--IEKLVNLRVLYMSNNKITNW------------GEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp EEEEEE-EECCCHHH--HHHHHHSSEEEESEEECCCH------------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTT
T ss_pred EEECcC-CcCCcCCc--cccCCCCCEEECCCCcCCch------------hHHHHHhcCCCCCEEEecCCccccccccccc
Confidence 999999 78888874 88999999999999977221 233578889999999999887644311
Q ss_pred ---c-cccccccccccEEE
Q 040318 160 ---F-LKFPKLLRITQALS 174 (366)
Q Consensus 160 ---~-~~~~~~~~~L~~L~ 174 (366)
+ ......+++|+.|+
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC
T ss_pred hHHHHHHHHHhCCCcEEEC
Confidence 1 11123456688776
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=2.9e-12 Score=107.20 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=72.3
Q ss_pred ccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCcccccccc
Q 040318 48 ELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVL 127 (366)
Q Consensus 48 ~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 127 (366)
.+|..+..+++|++|++++|.++.+| .+..+++|++|++++ +.+..+|.. +..+++|++|++++|.+..
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~-~~~~~~L~~L~L~~N~l~~-------- 107 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENL-DAVADTLEELWISYNQIAS-------- 107 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSSH-HHHHHHCSEEEEEEEECCC--------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccch-hhcCCcCCEEECcCCcCCc--------
Confidence 33345667777777777777777776 677777777777777 566667653 5666777777777776511
Q ss_pred ccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCC
Q 040318 128 SEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEI 180 (366)
Q Consensus 128 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 180 (366)
...+..+++|+.|+++++.....+.+... ..+++|+.|++.++..
T Consensus 108 -------l~~~~~l~~L~~L~l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 108 -------LSGIEKLVNLRVLYMSNNKITNWGEIDKL-AALDKLEDLLLAGNPL 152 (198)
T ss_dssp -------HHHHHHHHHSSEEEESEEECCCHHHHHHH-TTTTTCSEEEECSCHH
T ss_pred -------CCccccCCCCCEEECCCCcCCchhHHHHH-hcCCCCCEEEecCCcc
Confidence 12455667777777777766654432111 2244577777776644
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.13 E-value=2.4e-09 Score=99.28 Aligned_cols=234 Identities=12% Similarity=0.100 Sum_probs=128.2
Q ss_pred CCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCc-hhhhcCccCC
Q 040318 6 SNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLP-HELTALLNLR 83 (366)
Q Consensus 6 ~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~~L~ 83 (366)
..++.+.+.. +++.++...|.++ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .++.++ ..+.+|.+|+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-----i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-----LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-----CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-----ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 4455555553 3556666666664 5777766543 344443 2333 3566666654 344333 3456666777
Q ss_pred EeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccccccccccc
Q 040318 84 YLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKF 163 (366)
Q Consensus 84 ~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 163 (366)
.+++.. +.+..++..++. +.+|+.+.+..+ +. .-...++..+.+|+.+.+... ...++.-...
T Consensus 184 ~l~l~~-n~l~~I~~~aF~-~~~L~~l~lp~~-l~-------------~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~ 246 (401)
T 4fdw_A 184 KADLSK-TKITKLPASTFV-YAGIEEVLLPVT-LK-------------EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR 246 (401)
T ss_dssp EEECTT-SCCSEECTTTTT-TCCCSEEECCTT-CC-------------EECTTTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred eeecCC-CcceEechhhEe-ecccCEEEeCCc-hh-------------eehhhHhhCCCCCCEEecCCC-ccCccccccc
Confidence 777766 566666655444 466777766543 21 112234555666666666431 1222111111
Q ss_pred ccccccccEEEEeccCCCCcCccchhhhcccCceEecccccc-----eeeccccCccccccccCCCCCcEEeEecCCCCc
Q 040318 164 PKLLRITQALSISDCEIPLLNVSHLAYMEHLKDLVIDNSNLE-----ELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVK 238 (366)
Q Consensus 164 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~ 238 (366)
. .+|+.+.+.+.-. ......+..|++|+.+.+.++.+. .++..++ ..|++|+.+.+.+ .++
T Consensus 247 ~---~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF--------~~c~~L~~l~l~~--~i~ 312 (401)
T 4fdw_A 247 E---SGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL--------EGCPKLARFEIPE--SIR 312 (401)
T ss_dssp T---CCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT--------TTCTTCCEECCCT--TCC
T ss_pred c---CCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh--------hCCccCCeEEeCC--ceE
Confidence 1 3466776643211 122236677778888887664443 4555444 4677888887774 455
Q ss_pred ccc--cccCCCCccEEEEEccCCcccccccccccccccccccccccccccccccccc
Q 040318 239 DLT--WLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHA 293 (366)
Q Consensus 239 ~l~--~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (366)
.+. .+..+++|+.+.|..+ ++.+.. .++.++ +|+.+.+.+.
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~--l~~I~~-----------~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN--VTQINF-----------SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT--CCEECT-----------TSSSSS-CCCEEEECCS
T ss_pred EEhhhhhcCCCCccEEEECcc--ccEEcH-----------HhCCCC-CCCEEEEcCC
Confidence 544 3556788888888543 333321 255666 7888888764
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=1e-08 Score=95.06 Aligned_cols=265 Identities=8% Similarity=0.033 Sum_probs=144.2
Q ss_pred hhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCch-hhhcCccCCEeeccccccCCCcChhhhcC
Q 040318 26 FLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRYLNLERTYHLSRFPPELICS 103 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~L~L~~c~~~~~l~~~~l~~ 103 (366)
+..+..++.+.+.. .++.++. .+.++ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .+..++..++.+
T Consensus 109 ~~~~~~l~~i~ip~-----~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~ 178 (401)
T 4fdw_A 109 TEILKGYNEIILPN-----SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYY 178 (401)
T ss_dssp EEECSSCSEEECCT-----TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTT
T ss_pred EEecCCccEEEECC-----ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhC
Confidence 34456667666654 3455544 34444 6787777655 554433 3344 3678777754 456666555777
Q ss_pred CCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEEeccCCCCc
Q 040318 104 FSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSISDCEIPLL 183 (366)
Q Consensus 104 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 183 (366)
|++|+.+++..+.+...+ ..++. ..+|+.+.+.. ....++.- ....+.+|+.+.+...-. ..
T Consensus 179 c~~L~~l~l~~n~l~~I~-------------~~aF~-~~~L~~l~lp~-~l~~I~~~--aF~~~~~L~~l~l~~~l~-~I 240 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLP-------------ASTFV-YAGIEEVLLPV-TLKEIGSQ--AFLKTSQLKTIEIPENVS-TI 240 (401)
T ss_dssp CTTCCEEECTTSCCSEEC-------------TTTTT-TCCCSEEECCT-TCCEECTT--TTTTCTTCCCEECCTTCC-EE
T ss_pred cccCCeeecCCCcceEec-------------hhhEe-ecccCEEEeCC-chheehhh--HhhCCCCCCEEecCCCcc-Cc
Confidence 888888888776552221 11222 35677766652 22222211 112345577777754211 12
Q ss_pred CccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCc-----ccc--cccCCCCccEEEEEc
Q 040318 184 NVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVK-----DLT--WLAFAPNLKIIVIMH 256 (366)
Q Consensus 184 ~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~-----~l~--~l~~l~~L~~L~L~~ 256 (366)
....+.. .+|+.+.+ .+.++.++..++ ..|++|+.+.+.++. .. .++ .+..+++|+.+.|.+
T Consensus 241 ~~~aF~~-~~L~~i~l-p~~i~~I~~~aF--------~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKL-PNGVTNIASRAF--------YYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTTTTTT-CCCSEEEE-ETTCCEECTTTT--------TTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred ccccccc-CCccEEEe-CCCccEEChhHh--------hCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC
Confidence 2224444 57777777 355666665555 467888888887652 21 222 355677788877763
Q ss_pred cCCcccccccccccccccccccccccccccccccccccccccccCC-CcCCCCccEEeccCCCCCCCCCCCCCCCC-cce
Q 040318 257 CDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQG-ALPLPQLKEIRVTQCPKLKTLPLNSSSTK-LRN 334 (366)
Q Consensus 257 c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~~~~~~-~~~ 334 (366)
. ++.+.. .++.++++|+.+.|.. +++.+... ...+ +|+.+.+.+. .+..++....... ..+
T Consensus 310 ~--i~~I~~-----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 310 S--IRILGQ-----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp T--CCEECT-----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred c--eEEEhh-----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCc
Confidence 2 333321 2556677788877743 35454433 2235 7888888764 4444544433322 345
Q ss_pred eEEEcchhhhcc
Q 040318 335 IVISGGKDWWEE 346 (366)
Q Consensus 335 ~~~~~~~~~~~~ 346 (366)
..+..+....+.
T Consensus 373 ~~l~vp~~~~~~ 384 (401)
T 4fdw_A 373 TVIRVPAESVEK 384 (401)
T ss_dssp CEEEECGGGHHH
T ss_pred cEEEeCHHHHHH
Confidence 556655554433
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=1.1e-09 Score=89.35 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=78.2
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCccCchh-hhcCccC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIRGLPHE-LTALLNL 82 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~~l~~~-i~~l~~L 82 (366)
.++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. +..+++|++|++++|.++.+|.. +..+++|
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N----~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN----KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC----CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCC
Confidence 378999999999999987776999999999999999 88888775 57899999999999999988875 8899999
Q ss_pred CEeeccccccCCCcCh
Q 040318 83 RYLNLERTYHLSRFPP 98 (366)
Q Consensus 83 ~~L~L~~c~~~~~l~~ 98 (366)
++|++++ +.+...+.
T Consensus 108 ~~L~L~~-N~~~c~~~ 122 (174)
T 2r9u_A 108 THIYLYN-NPWDCECR 122 (174)
T ss_dssp SEEECCS-SCBCTTBG
T ss_pred CEEEeCC-CCcccccc
Confidence 9999999 66665543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=6.4e-10 Score=90.43 Aligned_cols=105 Identities=25% Similarity=0.264 Sum_probs=88.0
Q ss_pred cccEEECCCCCCCCCcCccCccccccccCCEEeccCCCCccC-chhhhcCccCCEeeccccccCCCcChhhhcCCCCCcE
Q 040318 31 SWTCLDNGPSRIKNSLTELPSGISSLVSLQHLDVSYTDIRGL-PHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEV 109 (366)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i~~l-~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~ 109 (366)
..++++++++ .++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++ +.+..++.+.+..+++|++
T Consensus 10 ~~~~l~~s~n----~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGK----SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTS----CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEeCCC----CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCE
Confidence 4688999999 8899997664 8999999999999977 56789999999999999 8899998876789999999
Q ss_pred EEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccc
Q 040318 110 LRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSR 155 (366)
Q Consensus 110 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 155 (366)
|++++|.+... ....+..+++|+.|+++++...
T Consensus 83 L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSI-------------PRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEe-------------CHHHhcCCCCCCEEEeCCCCCC
Confidence 99999987322 1234677889999999877654
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=6.9e-09 Score=94.33 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=88.1
Q ss_pred CEEEccCC-CCCccchhhhhcCCcccEEECCC-CCCCCCcCccC-ccccccccCCEEeccCCCCccCch-hhhcCccCCE
Q 040318 9 PSILELSS-NNKVFEPSWFLSRASWTCLDNGP-SRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPH-ELTALLNLRY 84 (366)
Q Consensus 9 ~~L~l~~~-~~~~l~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~L~~ 84 (366)
..++.+++ ++..+|. +..+++|++|+|++ | .++.++ ..+..+++|++|+|++|+++.++. .+.++++|++
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS----SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC----CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 35688887 8999988 88899999999996 8 888887 468889999999999999997654 6799999999
Q ss_pred eeccccccCCCcChhhhcCCCCCcEEEccCCCCCC
Q 040318 85 LNLERTYHLSRFPPELICSFSKLEVLRMLESGADS 119 (366)
Q Consensus 85 L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~ 119 (366)
|+|++ +.+..+|.+.+..++ |+.|++.+|.+..
T Consensus 85 L~l~~-N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSF-NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCS-SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EeCCC-CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999 889999887566565 9999999998743
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=1.5e-09 Score=99.62 Aligned_cols=22 Identities=14% Similarity=-0.062 Sum_probs=15.9
Q ss_pred hhhhcccCceEecccccceeec
Q 040318 188 LAYMEHLKDLVIDNSNLEELKT 209 (366)
Q Consensus 188 l~~~~~L~~L~l~~~~l~~l~~ 209 (366)
+...++|++|++++|.+.+.+.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHH
Confidence 4456788888888887766554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=6.7e-08 Score=87.74 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=74.2
Q ss_pred CCCCcCEEEccC-CCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCchhhhcCcc
Q 040318 4 RYSNIPSILELS-SNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPHELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~-~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~ 81 (366)
.+++|+.|+|++ |.+..+++..|..+++|++|+|++| .+..++. .|..+++|++|+|++|.++.+|..+.....
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS----GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS----CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC----ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence 567899999996 9999999877999999999999999 7888754 578899999999999999988876544445
Q ss_pred CCEeeccccccCCC
Q 040318 82 LRYLNLERTYHLSR 95 (366)
Q Consensus 82 L~~L~L~~c~~~~~ 95 (366)
|+.|++.+ +.+..
T Consensus 105 L~~l~l~~-N~~~c 117 (347)
T 2ifg_A 105 LQELVLSG-NPLHC 117 (347)
T ss_dssp CCEEECCS-SCCCC
T ss_pred ceEEEeeC-CCccC
Confidence 99999998 66553
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=8.3e-09 Score=94.67 Aligned_cols=161 Identities=11% Similarity=0.098 Sum_probs=111.8
Q ss_pred CCCcCEEEccCCCCCccchhhhh-----cCCcccEEECCCCCCCCCcCc--cCccccccccCCEEeccCCCCccC-----
Q 040318 5 YSNIPSILELSSNNKVFEPSWFL-----SRASWTCLDNGPSRIKNSLTE--LPSGISSLVSLQHLDVSYTDIRGL----- 72 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~-----~~~~L~~L~l~~~~~~~~~~~--l~~~~~~l~~L~~L~l~~~~i~~l----- 72 (366)
.++|+.|++++|.+.......+. ..++|++|++++| .++. +......+++|++|++++|.++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n----~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC----QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC----CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC----CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 36799999999998864333233 3379999999999 5554 222234477899999999988732
Q ss_pred chhh-hcCccCCEeeccccccCCC-----cChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcce
Q 040318 73 PHEL-TALLNLRYLNLERTYHLSR-----FPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNL 146 (366)
Q Consensus 73 ~~~i-~~l~~L~~L~L~~c~~~~~-----l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 146 (366)
...+ ...++|++|+|++ +.++. ++.. +..+++|++|++++|.+... ........+...++|+.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~---------g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSN-NPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDE---------GLELLAAQLDRNRQLQE 215 (372)
T ss_dssp HHHHHSTTCCCCEEECCS-SCCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHH---------HHHHHHHHGGGCSCCCE
T ss_pred HHHHHhcCCccceeeCCC-CCCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcH---------HHHHHHHHHhcCCCcCe
Confidence 2222 2467899999999 45544 3332 57889999999999987110 01223566778889999
Q ss_pred EEEEeccccccc--cccccccccccccEEEEeccCC
Q 040318 147 ISFSLYSSRGVR--NFLKFPKLLRITQALSISDCEI 180 (366)
Q Consensus 147 L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 180 (366)
|+++++...+.. .+.......++|++|+++++..
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 999998876532 3333333346799999999876
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.60 E-value=2.1e-08 Score=80.97 Aligned_cols=87 Identities=10% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCCcEEeEecCCCCcc--cccccCCCCccEEEEEccCCcccccccccccccccccccccc----cccccccccccccccc
Q 040318 224 RSLHLASIAFCSRVKD--LTWLAFAPNLKIIVIMHCDDLEEIISVEKLNQLSDIMGELNF----FAKLELLDLYHAENLK 297 (366)
Q Consensus 224 ~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~ 297 (366)
.+|++|++++|. +++ +..+..+++|++|+|++|..+++... ..+.. .++|++|++++|..++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcCC
Confidence 357788888874 665 44566778888888888877766421 02222 3578888888887776
Q ss_pred cccCC-CcCCCCccEEeccCCCCCCC
Q 040318 298 SIYQG-ALPLPQLKEIRVTQCPKLKT 322 (366)
Q Consensus 298 ~~~~~-~~~~~~L~~L~l~~c~~l~~ 322 (366)
+-... ...+++|++|++++|++++.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 64322 23478888888888887775
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=4e-08 Score=79.28 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=48.4
Q ss_pred ccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcc--cccccCC----CCccEEEEEccCCccccccc
Q 040318 193 HLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKD--LTWLAFA----PNLKIIVIMHCDDLEEIISV 266 (366)
Q Consensus 193 ~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~--l~~l~~l----~~L~~L~L~~c~~~~~~~~~ 266 (366)
+|+.|+++++.+++.+.... ..|++|++|++++|..+++ +..++.+ ++|++|+|++|..+++...
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L--------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl- 132 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM--------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI- 132 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG--------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-
T ss_pred eEeEEeCcCCCccHHHHHHh--------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-
Confidence 34555555544444333222 3566677777777766666 3334432 3567777777766655321
Q ss_pred ccccccccccccccccccccccccccccccccc
Q 040318 267 EKLNQLSDIMGELNFFAKLELLDLYHAENLKSI 299 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 299 (366)
..+..+++|++|++++|+.+++.
T Consensus 133 ----------~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 ----------IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ----------HHGGGCTTCCEEEEESCTTCCCH
T ss_pred ----------HHHhcCCCCCEEECCCCCCCCch
Confidence 13345667777777777666543
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=3.4e-06 Score=77.86 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=34.0
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEecc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVS 65 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~ 65 (366)
.|.+|+.+.+.. +++.++..+|.+|.+|+.+++..+ ++.++. .+..+..|+.+.+.
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-----VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-----CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-----ceEccchhhcccccchhhccc
Confidence 567777777753 366677777777777777777543 344432 34556666555443
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=5.9e-07 Score=81.81 Aligned_cols=172 Identities=16% Similarity=0.120 Sum_probs=84.8
Q ss_pred hhcCCcccEEECCCCCCCC-Cc-----CccCccccccccCCEEeccCCCCccCchhhhcCccCCEeeccccccCCCcChh
Q 040318 26 FLSRASWTCLDNGPSRIKN-SL-----TELPSGISSLVSLQHLDVSYTDIRGLPHELTALLNLRYLNLERTYHLSRFPPE 99 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~-~~-----~~l~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~~L~L~~c~~~~~l~~~ 99 (366)
...+++|+.|.+.+..... .+ ..+...+..+++|+.|+++++.-..++. + .+++|++|++..| .+..-...
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~-~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG-GLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS-BCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecC-CCChHHHH
Confidence 4456777777765441000 01 1122334456777777777762123333 3 2677777777663 33321111
Q ss_pred hh--cCCCCCcEEEccCCC--CCCccccccccccchHHHHHhh--cCCCCcceEEEEecccccc--cccccccccccccc
Q 040318 100 LI--CSFSKLEVLRMLESG--ADSTAEQGSVLSEDAEPLMKEL--LCLKLLNLISFSLYSSRGV--RNFLKFPKLLRITQ 171 (366)
Q Consensus 100 ~l--~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~ 171 (366)
.+ ..+++|++|++..+. ..... . .......+ ..+++|+.|.+..+...+. ..+... ..+++|+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~----~----~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~ 282 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDG----D----MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLE 282 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCS----C----GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCS
T ss_pred HHHHccCCCCcEEEEeccccccccch----h----HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCC
Confidence 12 257777777774321 00000 0 00001112 2457778887776554421 112111 2345688
Q ss_pred EEEEeccCCCCcC--cc--chhhhcccCceEecccccceeec
Q 040318 172 ALSISDCEIPLLN--VS--HLAYMEHLKDLVIDNSNLEELKT 209 (366)
Q Consensus 172 ~L~l~~~~~~~~~--~~--~l~~~~~L~~L~l~~~~l~~l~~ 209 (366)
+|+++.+...+.. .+ .+..+++|+.|+++.|.+.+-..
T Consensus 283 ~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred EEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 8888665431110 01 34567888888888777655433
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.38 E-value=6e-06 Score=76.21 Aligned_cols=107 Identities=7% Similarity=0.105 Sum_probs=72.2
Q ss_pred CCC-CcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCc-hhhhcCc
Q 040318 4 RYS-NIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLP-HELTALL 80 (366)
Q Consensus 4 ~~~-~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~ 80 (366)
.|. .|+.+.+.. .++.+...+|.+|.+|+.+.+..+.- ..++.+.. .+..+.+|+.+.+..+ ++.++ ..+..+.
T Consensus 61 ~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p-~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 61 NYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKP-SCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp TCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCC-CCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred CCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCC-CeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 353 588999875 48889888899999999998876410 03566643 4667888887776554 44333 3456778
Q ss_pred cCCEeeccccccCCCcChhhhcCCCCCcEEEccCC
Q 040318 81 NLRYLNLERTYHLSRFPPELICSFSKLEVLRMLES 115 (366)
Q Consensus 81 ~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~ 115 (366)
+|+.+.+.. .+..++..++..+.+|+.+.+..+
T Consensus 138 ~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 138 ELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccc--eeeeecccceecccccccccccce
Confidence 888888754 344555555677777777777653
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=4.3e-06 Score=77.17 Aligned_cols=240 Identities=12% Similarity=0.025 Sum_probs=130.3
Q ss_pred CCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCc-hhhhcCccCCEeeccccccCCC
Q 040318 18 NKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLP-HELTALLNLRYLNLERTYHLSR 95 (366)
Q Consensus 18 ~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~-~~i~~l~~L~~L~L~~c~~~~~ 95 (366)
...+....|.+|++|+.+.+..+ +..++. .+..+.+|+.+.+..+ ++.++ ..+.++..|+.+.+.. + ...
T Consensus 150 ~~~i~~~aF~~c~~L~~i~l~~~-----~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~-~-~~~ 221 (394)
T 4fs7_A 150 VTVIGDEAFATCESLEYVSLPDS-----METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN-S-LYY 221 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-----CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT-T-CCE
T ss_pred ccccchhhhcccCCCcEEecCCc-----cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC-C-ceE
Confidence 44466667888899999888754 344543 4667888888887665 44332 3456777787777654 1 222
Q ss_pred cChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEeccccccccccccccccccccEEEE
Q 040318 96 FPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSRGVRNFLKFPKLLRITQALSI 175 (366)
Q Consensus 96 l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 175 (366)
+... .....+|+.+.+..... .-...++..+..|+.+.+..... .+.. .....+..++.+..
T Consensus 222 i~~~-~~~~~~l~~i~ip~~~~--------------~i~~~~f~~~~~l~~~~~~~~~~-~i~~--~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 222 LGDF-ALSKTGVKNIIIPDSFT--------------ELGKSVFYGCTDLESISIQNNKL-RIGG--SLFYNCSGLKKVIY 283 (394)
T ss_dssp ECTT-TTTTCCCCEEEECTTCC--------------EECSSTTTTCSSCCEEEECCTTC-EECS--CTTTTCTTCCEEEE
T ss_pred eehh-hcccCCCceEEECCCce--------------ecccccccccccceeEEcCCCcc-eeec--cccccccccceecc
Confidence 2222 34456777777754321 11122344556666666643211 1110 01112233444443
Q ss_pred eccCCCCcCccchhhhcccCceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCcccc--cccCCCCccEEE
Q 040318 176 SDCEIPLLNVSHLAYMEHLKDLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDLT--WLAFAPNLKIIV 253 (366)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~ 253 (366)
.... .....+..+.+|+.+.+.. .++.++..++ ..|.+|+.+.+.+ .++.+. .+..+.+|+.+.
T Consensus 284 ~~~~---i~~~~F~~~~~L~~i~l~~-~i~~I~~~aF--------~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~ 349 (394)
T 4fs7_A 284 GSVI---VPEKTFYGCSSLTEVKLLD-SVKFIGEEAF--------ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNIN 349 (394)
T ss_dssp CSSE---ECTTTTTTCTTCCEEEECT-TCCEECTTTT--------TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEEC
T ss_pred Ccee---ecccccccccccccccccc-ccceechhhh--------cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEE
Confidence 3211 1222555667777777753 3556655544 4677788777754 355543 345677777777
Q ss_pred EEccCCcccccccccccccccccccccccccccccccccccccccccCCCcCCCCccEE
Q 040318 254 IMHCDDLEEIISVEKLNQLSDIMGELNFFAKLELLDLYHAENLKSIYQGALPLPQLKEI 312 (366)
Q Consensus 254 L~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 312 (366)
+... ++.+.. .++.++++|+.+.+.. .++.+......+++|+.+
T Consensus 350 lp~~--l~~I~~-----------~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 350 FPLS--LRKIGA-----------NAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCTT--CCEECT-----------TTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred ECcc--ccEehH-----------HHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 7543 333221 2566777888887753 233443344445555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=5.8e-07 Score=81.84 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=89.9
Q ss_pred ccccccCCEEeccCCCCc----------cCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccc
Q 040318 53 ISSLVSLQHLDVSYTDIR----------GLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAE 122 (366)
Q Consensus 53 ~~~l~~L~~L~l~~~~i~----------~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~ 122 (366)
+.++++|+.|.+...... .+...+..+++|+.|++++|..+ .++. +. +++|++|++..|.+
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l----- 205 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGL----- 205 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBC-----
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCC-----
Confidence 556789999988654221 24455677788999998874322 3343 33 78889998887765
Q ss_pred cccccccchHHHHHhhc--CCCCcceEEEEecccc---c--cccccccccccccccEEEEeccCCCCcCccchhhhcccC
Q 040318 123 QGSVLSEDAEPLMKELL--CLKLLNLISFSLYSSR---G--VRNFLKFPKLLRITQALSISDCEIPLLNVSHLAYMEHLK 195 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~---~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 195 (366)
.......+. .+++|+.|+++..... . ...+... .....+|+|+
T Consensus 206 --------~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~----------------------l~~~~~p~Lr 255 (362)
T 2ra8_A 206 --------PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL----------------------FSKDRFPNLK 255 (362)
T ss_dssp --------CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG----------------------SCTTTCTTCC
T ss_pred --------ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH----------------------HhcCCCCCcC
Confidence 233444443 6788888888632110 0 1111100 0112355666
Q ss_pred ceEecccccceeeccccCccccccccCCCCCcEEeEecCCCCccc------ccccCCCCccEEEEEccCCcc
Q 040318 196 DLVIDNSNLEELKTDCTGEVQKVLQCGFRSLHLASIAFCSRVKDL------TWLAFAPNLKIIVIMHCDDLE 261 (366)
Q Consensus 196 ~L~l~~~~l~~l~~~~~~~~~~~p~~~~~~L~~L~l~~~~~l~~l------~~l~~l~~L~~L~L~~c~~~~ 261 (366)
.|.+.++.+.+...... .....+++|+.|+++.+ .+++. ..+..+++|+.|+|++|...+
T Consensus 256 ~L~L~~~~i~~~~~~~l-----a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 256 WLGIVDAEEQNVVVEMF-----LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp EEEEESCTTHHHHHHHH-----HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred EEeCCCCCCchHHHHHH-----HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 66665544432111100 01124677777777666 45541 122356777777777775433
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=6.2e-07 Score=73.64 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=62.1
Q ss_pred hhcCCcccEEECCCC-CCCCCcC---ccCccccccccCCEEeccCCCCcc-----CchhhhcCccCCEeeccccccCCC-
Q 040318 26 FLSRASWTCLDNGPS-RIKNSLT---ELPSGISSLVSLQHLDVSYTDIRG-----LPHELTALLNLRYLNLERTYHLSR- 95 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~-~~~~~~~---~l~~~~~~l~~L~~L~l~~~~i~~-----l~~~i~~l~~L~~L~L~~c~~~~~- 95 (366)
+...+.|++|++++| .+ .-. .+...+...++|++|++++|.+.. +...+...++|++|+|++ +.+++
T Consensus 32 l~~~~~L~~L~L~~n~~i--~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNI--PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTC--CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHH
T ss_pred HhcCCCCCEEEecCCCCC--CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHH
Confidence 455666777777666 32 100 122334445667777777766652 233444556677777766 44443
Q ss_pred ----cChhhhcCCCCCcEEEc--cCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecccc
Q 040318 96 ----FPPELICSFSKLEVLRM--LESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYSSR 155 (366)
Q Consensus 96 ----l~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 155 (366)
+... +...+.|++|++ .+|.+... ........+...+.|+.|+++++...
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2222 455566777777 55654111 11224455666666777777665543
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.16 E-value=8.7e-05 Score=68.36 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=63.7
Q ss_pred CCccchhhhhcCC-cccEEECCCCCCCCCcCccC-ccccccccCCEEeccCC---CCccCc-hhhhcCccCCEeeccccc
Q 040318 18 NKVFEPSWFLSRA-SWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYT---DIRGLP-HELTALLNLRYLNLERTY 91 (366)
Q Consensus 18 ~~~l~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~---~i~~l~-~~i~~l~~L~~L~L~~c~ 91 (366)
++.++..+|.+++ .|+.+.+-. .++.+. .+|.+|.+|+.+.+..+ .++.+. ..+.++.+|+.+.+..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~-----svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-- 123 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD-----TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-- 123 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-----TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--
T ss_pred eeEcCHhhccCCCCcCEEEEECC-----CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--
Confidence 4457777788875 588888864 456664 45777899999888765 255443 3566778888877754
Q ss_pred cCCCcChhhhcCCCCCcEEEccCC
Q 040318 92 HLSRFPPELICSFSKLEVLRMLES 115 (366)
Q Consensus 92 ~~~~l~~~~l~~l~~L~~L~l~~~ 115 (366)
.+..++..++..+.+|+.+.+...
T Consensus 124 ~~~~I~~~aF~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 124 SVTEIDSEAFHHCEELDTVTIPEG 147 (394)
T ss_dssp TCSEECTTTTTTCTTCCEEECCTT
T ss_pred ccceehhhhhhhhcccccccccce
Confidence 356666666788899999888654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=4e-06 Score=68.72 Aligned_cols=107 Identities=13% Similarity=0.067 Sum_probs=64.4
Q ss_pred CCCCcCEEEccCC-CCCc-----cchhhhhcCCcccEEECCCCCCCCCcCc-----cCccccccccCCEEeccCCCCcc-
Q 040318 4 RYSNIPSILELSS-NNKV-----FEPSWFLSRASWTCLDNGPSRIKNSLTE-----LPSGISSLVSLQHLDVSYTDIRG- 71 (366)
Q Consensus 4 ~~~~L~~L~l~~~-~~~~-----l~~~~~~~~~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~~- 71 (366)
.++.|+.|+|++| .+.+ +... +...+.|++|++++| .+++ +...+...+.|++|++++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n----~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT----RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS----CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC----CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 4567777777777 6653 2222 455677777777777 4443 22334445677777777777662
Q ss_pred ----CchhhhcCccCCEeec--cccccCCC-----cChhhhcCCCCCcEEEccCCCC
Q 040318 72 ----LPHELTALLNLRYLNL--ERTYHLSR-----FPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 72 ----l~~~i~~l~~L~~L~L--~~c~~~~~-----l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
+...+...+.|++|+| ++ +.++. +.. .+...++|++|++.+|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 3445566667777777 55 45543 222 245556777777777754
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=1.1e-05 Score=69.88 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=56.9
Q ss_pred hhcCCcccEEECCCCCCCCCcCcc---CccccccccCCEEeccCCCCccCchhhhcCc--cCCEeeccccccCC-CcC--
Q 040318 26 FLSRASWTCLDNGPSRIKNSLTEL---PSGISSLVSLQHLDVSYTDIRGLPHELTALL--NLRYLNLERTYHLS-RFP-- 97 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~l---~~~~~~l~~L~~L~l~~~~i~~l~~~i~~l~--~L~~L~L~~c~~~~-~l~-- 97 (366)
..++++|++|++++| .+..+ +..+..+++|+.|+|++|.+..+ ..+..+. +|++|+|.+ +.+. .+|
T Consensus 166 ~~~l~~L~~L~Ls~N----~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~-Npl~~~~~~~ 239 (267)
T 3rw6_A 166 EENIPELLSLNLSNN----RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDG-NSLCDTFRDQ 239 (267)
T ss_dssp HHHCTTCCEEECTTS----CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTT-STTGGGCSSH
T ss_pred HhhCCCCCEEECCCC----CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccC-CcCccccCcc
Confidence 456888999999998 55554 34456788999999999888765 3344444 888999888 4443 233
Q ss_pred ----hhhhcCCCCCcEEEc
Q 040318 98 ----PELICSFSKLEVLRM 112 (366)
Q Consensus 98 ----~~~l~~l~~L~~L~l 112 (366)
..++..+++|+.|+=
T Consensus 240 ~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHCTTCCEESS
T ss_pred hhHHHHHHHHCcccCeECC
Confidence 234677888888874
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=2.3e-05 Score=67.77 Aligned_cols=111 Identities=16% Similarity=0.093 Sum_probs=75.1
Q ss_pred hhcCCcccE--EECCCCCCCCCcCccCcc----ccccccCCEEeccCCCCccCc---hhhhcCccCCEeeccccccCCCc
Q 040318 26 FLSRASWTC--LDNGPSRIKNSLTELPSG----ISSLVSLQHLDVSYTDIRGLP---HELTALLNLRYLNLERTYHLSRF 96 (366)
Q Consensus 26 ~~~~~~L~~--L~l~~~~~~~~~~~l~~~----~~~l~~L~~L~l~~~~i~~l~---~~i~~l~~L~~L~L~~c~~~~~l 96 (366)
+...+.|.. ++++.| ....++.. ..++++|+.|+|++|.++.++ ..+..+++|+.|+|++ +.+..+
T Consensus 137 l~~dp~L~~~~l~l~~N----~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~ 211 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN----RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE 211 (267)
T ss_dssp GGGCHHHHHTTCCCCTT----SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG
T ss_pred cCCCcchhhcCccccCC----HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc
Confidence 455566666 667777 44444432 245889999999999888654 5667899999999999 888876
Q ss_pred ChhhhcCCC--CCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEE
Q 040318 97 PPELICSFS--KLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISF 149 (366)
Q Consensus 97 ~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 149 (366)
.. +..+. +|++|++.+|.+... .++........+..+++|+.|+-
T Consensus 212 ~~--l~~l~~l~L~~L~L~~Npl~~~------~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 212 RE--LDKIKGLKLEELWLDGNSLCDT------FRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GG--GGGGTTSCCSEEECTTSTTGGG------CSSHHHHHHHHHHHCTTCCEESS
T ss_pred hh--hhhcccCCcceEEccCCcCccc------cCcchhHHHHHHHHCcccCeECC
Confidence 33 44444 999999999987210 01111223345667788887754
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.73 E-value=0.001 Score=60.66 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=47.2
Q ss_pred CCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccCc-cccccccCCEEeccCCCCccCchhhhcCccCC
Q 040318 5 YSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELPS-GISSLVSLQHLDVSYTDIRGLPHELTALLNLR 83 (366)
Q Consensus 5 ~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~i~~l~~~i~~l~~L~ 83 (366)
..+|+.+.+. .+++.++..+|.+|.+|+.+.+.. .++.+.. .+.++ .|+.+.+..+ ++.+....-...+|+
T Consensus 45 ~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-----~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 45 RDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-----TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD 116 (379)
T ss_dssp GGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-----TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred ccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-----cceEechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence 3467777776 347778888888888888888864 4556644 34445 5666655432 444433322334677
Q ss_pred Eeeccc
Q 040318 84 YLNLER 89 (366)
Q Consensus 84 ~L~L~~ 89 (366)
.+.+..
T Consensus 117 ~i~lp~ 122 (379)
T 4h09_A 117 DFEFPG 122 (379)
T ss_dssp EEECCT
T ss_pred cccCCC
Confidence 777754
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.98 E-value=0.0014 Score=59.68 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=82.5
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCCCCccCch-hhhcCcc
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYTDIRGLPH-ELTALLN 81 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~i~~l~~-~i~~l~~ 81 (366)
.+.+|+.+.+..+ +..++...|.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++. .+.++.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-----v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-----VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-----CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-----ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 4567777777643 56667666788888888887653 34553 34566778888877543 444432 4677888
Q ss_pred CCEeeccccccCCCcChhhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEE
Q 040318 82 LRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFS 150 (366)
Q Consensus 82 L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 150 (366)
|+.+.+.. +.+..++..++.+|.+|+.+.+..+ +. .-...++.++.+|+.+.+.
T Consensus 288 L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~-------------~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-LK-------------TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-------------EECTTTTTTCTTCCCCCCC
T ss_pred cccccccc-cccceehhhhhcCCCCCCEEEcCcc-cc-------------EEHHHHhhCCCCCCEEEEC
Confidence 88888876 6677777666788888888888654 21 1223456677777777664
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.70 E-value=0.016 Score=44.00 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=31.1
Q ss_pred EEeccCCCCc--cCchhhhcCccCCEeeccccccCCCcChhhhcCCCCCcEEEccCCCC
Q 040318 61 HLDVSYTDIR--GLPHELTALLNLRYLNLERTYHLSRFPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 61 ~L~l~~~~i~--~l~~~i~~l~~L~~L~L~~c~~~~~l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
.++-++++++ .+|..+ -.+|++|+|++ +.++.++.+++..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 4445555555 555432 13466666666 566666655566666667777766655
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.70 E-value=0.02 Score=46.76 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=64.5
Q ss_pred hhcCCcccEEECCCCCCCCCcCc-----cCccccccccCCEEeccCCCCc-----cCchhhhcCccCCEeeccccccCCC
Q 040318 26 FLSRASWTCLDNGPSRIKNSLTE-----LPSGISSLVSLQHLDVSYTDIR-----GLPHELTALLNLRYLNLERTYHLSR 95 (366)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~i~-----~l~~~i~~l~~L~~L~L~~c~~~~~ 95 (366)
..+-+.|+.|+++++. .+++ +-..+..-..|+.|+|++|.+. .+-..+..-..|++|+|+. +.++.
T Consensus 37 l~~n~~L~~L~L~~nn---~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMK---RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCC---SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCH
T ss_pred HhcCCCccEEECCCCC---CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCH
Confidence 3455677778877642 3332 2233445567788888877766 2333445556788888877 56654
Q ss_pred cCh----hhhcCCCCCcEEEccCCCCCCccccccccccchHHHHHhhcCCCCcceEEEEecc
Q 040318 96 FPP----ELICSFSKLEVLRMLESGADSTAEQGSVLSEDAEPLMKELLCLKLLNLISFSLYS 153 (366)
Q Consensus 96 l~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 153 (366)
-.. +.+..-+.|++|++.++...... ......+..++..-+.|+.|++..+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig------~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLG------NQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCC------HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcC------HHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 211 11444455888888654210000 00112344566666777777776443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.31 E-value=0.025 Score=46.22 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=29.5
Q ss_pred cccCCEEeccCC-CCc-----cCchhhhcCccCCEeeccccccCCC-----cChhhhcCCCCCcEEEccCCCC
Q 040318 56 LVSLQHLDVSYT-DIR-----GLPHELTALLNLRYLNLERTYHLSR-----FPPELICSFSKLEVLRMLESGA 117 (366)
Q Consensus 56 l~~L~~L~l~~~-~i~-----~l~~~i~~l~~L~~L~L~~c~~~~~-----l~~~~l~~l~~L~~L~l~~~~~ 117 (366)
-..|++|+|+++ ++. .+-..+..-..|+.|+|++ +.+.+ +... +..-+.|++|++..|.+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~a-L~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIEL-IETSPSLRVLNVESNFL 110 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHH-HHHCSSCCEEECCSSBC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHH-HhcCCccCeEecCCCcC
Confidence 445666666654 443 1223344445566666665 33332 2221 33345566666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.90 E-value=0.024 Score=43.01 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=43.8
Q ss_pred CEEEccCCCCC--ccchhhhhcCCcccEEECCCCCCCCCcCccCcc-ccccccCCEEeccCCCCc
Q 040318 9 PSILELSSNNK--VFEPSWFLSRASWTCLDNGPSRIKNSLTELPSG-ISSLVSLQHLDVSYTDIR 70 (366)
Q Consensus 9 ~~L~l~~~~~~--~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~i~ 70 (366)
+.++-++++++ .+|.. -.++|++|+|++| .++.++.. +..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N----~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA---FPVDTTELVLTGN----NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC---CCTTCSEEECTTS----CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC---CCcCCCEEECCCC----cCCccChhhhhhccccCEEEecCCCee
Confidence 46777788887 78864 2347999999999 88998765 567899999999999665
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.27 E-value=5.5 Score=28.14 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCCCCccchhhhhcCCcccEEECCCCCCCCCcCccC-ccccccccCCEEeccCC
Q 040318 15 SSNNKVFEPSWFLSRASWTCLDNGPSRIKNSLTELP-SGISSLVSLQHLDVSYT 67 (366)
Q Consensus 15 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~ 67 (366)
|..++.+..+.|.+|..|+.+.+-.+ ++.+. ..|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-----v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-----IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-----SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-----hheEcHHHHhccCCccEEEEcCC
Confidence 44566677777777777777777653 44553 34666777777776654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.60 E-value=16 Score=25.71 Aligned_cols=36 Identities=11% Similarity=-0.067 Sum_probs=31.8
Q ss_pred CCCCcCEEEccCCCCCccchhhhhcCCcccEEECCCC
Q 040318 4 RYSNIPSILELSSNNKVFEPSWFLSRASWTCLDNGPS 40 (366)
Q Consensus 4 ~~~~L~~L~l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 40 (366)
.|..|+.+.+..+ ++.+....|.+|.+|+.+.+...
T Consensus 18 ~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 18 GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 6899999999865 77888888999999999998876
Done!