BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040319
(812 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
Bacillus Subtilis Subsp. Subtilis Str. 168
Length = 485
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 160 ELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRD 195
+LP+ D TV+ ++NE + EKA E+ K D
Sbjct: 313 QLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTD 348
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 12 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 70
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 71 ATYRKLEEMAKQVTN--PSSRYY 91
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 12 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 70
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 71 ATYRKLEEMAKQVTN--PSSRYY 91
>pdb|1N7R|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase
W291a/w292a/f343v Mutant Complex With Hexasaccharide
Hyaluronan
Length = 721
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 12 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 70
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 71 ATYRKLEEMAKQVTN--PSSRYY 91
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 14 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 72
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 73 ATYRKLEEMAKQVTN--PSSRYY 93
>pdb|1N7P|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292aF343V
Double Mutant
Length = 721
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 12 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 70
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 71 ATYRKLEEMAKQVTN--PSSRYY 91
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 12 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 70
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 71 ATYRKLEEMAKQVTN--PSSRYY 91
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 14 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 72
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 73 ATYRKLEEMAKQVTN--PSSRYY 93
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 14 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 72
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 73 ATYRKLEEMAKQVTN--PSSRYY 93
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 12 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 70
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 71 ATYRKLEEMAKQVTN--PSSRYY 91
>pdb|1N7O|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase F343v Mutant
Length = 721
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 507 WNGLIAGHLLHRQGDEALA---------VWSSMEKASIKPDAITFVLIISAYRYTNLNLV 557
WNG+IAG+ + ++ +A V S+ S + D I S Y+ T+ NL
Sbjct: 12 WNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYK-TSANLT 70
Query: 558 DSCRKLFLSMKTIYNIEPTSEHY 580
+ RKL K + N P+S +Y
Sbjct: 71 ATYRKLEEMAKQVTN--PSSRYY 91
>pdb|2Z7B|A Chain A, Crystal Structure Of Mesorhizobium Loti
3-Hydroxy-2-Methylpyridine-4, 5-Dicarboxylate
Decarboxylase
Length = 270
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 605 FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655
F + V+ L+ + +I LN I HI A +P+DPA++ L L S
Sbjct: 35 FTXRRKVFEELVTATKILLNEGIXDTFG-HISARDPEDPASFFLAQKLAPS 84
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 154 LLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACT 213
L++ ++LPH D +WN V SS N KA L R KRD F V + C
Sbjct: 288 LVEDDEDLPHHDEKTWN-VGSSNRN-----KAENLLRG-KRDGTFLV----RESSKQGCY 336
Query: 214 GCFVLMEGRAVH 225
C V+++G H
Sbjct: 337 ACSVVVDGEVKH 348
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85
Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase:
An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 159 DELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVL 218
++LPH D +WN V KA L R KRD F V + C C V+
Sbjct: 1 EDLPHHDEKTWN------VGSSNRNKAENLLRG-KRDGTFLVR----ESSKQGCYACSVV 49
Query: 219 MEGRAVH 225
++G H
Sbjct: 50 VDGEVKH 56
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 159 DELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVL 218
++LPH D +WN V KA L R KRD F V + C C V+
Sbjct: 2 EDLPHHDEKTWN------VGSSNRNKAENLLRG-KRDGTFLVR----ESSKQGCYACSVV 50
Query: 219 MEGRAVH 225
++G H
Sbjct: 51 VDGEVKH 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,180,181
Number of Sequences: 62578
Number of extensions: 943721
Number of successful extensions: 2621
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2619
Number of HSP's gapped (non-prelim): 17
length of query: 812
length of database: 14,973,337
effective HSP length: 107
effective length of query: 705
effective length of database: 8,277,491
effective search space: 5835631155
effective search space used: 5835631155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)